Science.gov

Sample records for oskolkov pri fotodelenii

  1. PriMux

    SciTech Connect

    2010-08-31

    PriMux is used to compute sets of compatible Polymerase Chain Reaction (PCR)signatures that can be used for detecting the presence of biological species in a small sample of material. Before use, the computed signatures must be empirically tested in a wet lab.

  2. MISR Browse Images: Puerto Rico Dust Experiment (PRiDE)

    Atmospheric Science Data Center

    2013-04-02

    MISR Browse Images: Puerto Rico Dust Experiment (PRiDE) These MISR Browse images provide ... overview of the region observed during the Puerto Rico Dust Experiment (PRiDE) field campaign. PRiDE was a study of the radiative, ...

  3. Linking Knowledge and Action: PRI's Community Consultant.

    ERIC Educational Resources Information Center

    Spencer, Gregory P.

    Within the Partnership for Rural Improvement (PRI), community consultants operate within three complex sets of relationships: client groups, the organizational structure of PRI, and the local operational base. Community consultants are responsible for developing and facilitating rural development and for providing assistance in community and…

  4. Synthesis and Biological Activity of Diastereomeric and Geometric Analogs of Calcipotriol, PRI-2202 and PRI-2205, Against Human HL-60 Leukemia and MCF-7 Breast Cancer Cells

    PubMed Central

    Milczarek, Magdalena; Chodyński, Michał; Filip-Psurska, Beata; Martowicz, Agnieszka; Krupa, Małgorzata; Krajewski, Krzysztof; Kutner, Andrzej; Wietrzyk, Joanna

    2013-01-01

    Diastereomeric and geometric analogs of calcipotriol, PRI-2202 and PRI-2205, were synthesized as advanced intermediates from vitamin D C-22 benzothiazoyl sulfones and side-chain aldehydes using our convergent strategy. Calcitriol, calcipotriol (PRI-2201) and tacalcitol (PRI-2191) were used as the reference compounds. Among a series of tested analogs the diastereomeric analog PRI-2202 showed the strongest antiproliferative activity on the human breast cancer cell line MCF-7, whereas the geometric analog PRI-2205 was the weakest. Both analogs were less potent in antiproliferative activity against HL-60 cells compared to the reference compounds. The ability to potentiate antiproliferative effect of cisplatin or doxorubicin against HL-60 cells or that of tamoxifen against the MCF-7 cell line was observed at higher doses of PRI-2202 or PRI-2205 than those of the reference compounds. The proapoptotic activity of tamoxifen, expressed as the diminished mitochondrial membrane potential, as well as the increased phosphatidylserine expression, was partially attenuated by calcitriol, PRI-2191, PRI-2201 and PRI-2205. The treatment of the MCF-7 cells with tamoxifen alone resulted in an increase in VDR expression. Moreover, a further increase in VDR expression was observed when the analogs PRI-2201 or PRI-2205, but not PRI-2191, were used in combination with tamoxifen. This observation could partially explain the potentiation of the antiproliferative effect of tamoxifen by vitamin D analogs. PMID:24202449

  5. Structural mechanisms of PriA-mediated DNA replication restart.

    PubMed

    Bhattacharyya, Basudeb; George, Nicholas P; Thurmes, Tiffany M; Zhou, Ruobo; Jani, Niketa; Wessel, Sarah R; Sandler, Steven J; Ha, Taekjip; Keck, James L

    2014-01-28

    Collisions between cellular DNA replication machinery (replisomes) and damaged DNA or immovable protein complexes can dissociate replisomes before the completion of replication. This potentially lethal problem is resolved by cellular "replication restart" reactions that recognize the structures of prematurely abandoned replication forks and mediate replisomal reloading. In bacteria, this essential activity is orchestrated by the PriA DNA helicase, which identifies replication forks via structure-specific DNA binding and interactions with fork-associated ssDNA-binding proteins (SSBs). However, the mechanisms by which PriA binds replication fork DNA and coordinates subsequent replication restart reactions have remained unclear due to the dearth of high-resolution structural information available for the protein. Here, we describe the crystal structures of full-length PriA and PriA bound to SSB. The structures reveal a modular arrangement for PriA in which several DNA-binding domains surround its helicase core in a manner that appears to be poised for binding to branched replication fork DNA structures while simultaneously allowing complex formation with SSB. PriA interaction with SSB is shown to modulate SSB/DNA complexes in a manner that exposes a potential replication initiation site. From these observations, a model emerges to explain how PriA links recognition of diverse replication forks to replication restart.

  6. Finding the SurPriSe: A Case Study of a Faculty Learning Community

    ERIC Educational Resources Information Center

    Michel, Roberta M.

    2014-01-01

    This article details a faculty learning community (FLC) that started in 2009 on the campus of a Midwestern University and has evolved into an interdisciplinary research, teaching and social community of practice and learning called SurPriSe. SurPriSe is an acronym that reflects the interest area of the FLC; Sur for surveillance, Pri for privacy,…

  7. Canopy Level Chlorophyll Fluorescence and the PRI in a Cornfield

    NASA Technical Reports Server (NTRS)

    Middleton, Elizabeth M.; Cheng, Yen-Ben; Corp, Lawrence A.; Campbell, Petya K. E.; Huemmrich, K. Fred; Zhang, Qingyuan; Kustas, William P.

    2012-01-01

    Two bio-indicators, the Photochemical Reflectance Index (PRI) and solar-induced red and far-red Chlorophyll Fluorescence (SIF), were derived from directional hyperspectral observations and studied in a cornfield on two contrasting days in the growing season. Both red and far-red SIF exhibited higher values on the day when the canopy in the early senescent stage, but only the far-red SIF showed sensitivity to viewing geometry. Consequently, the red/far-red SIF ratio varied greatly among azimuth positions while the largest values were obtained for the "hotspot" at both growth stages. This ratio was lower (approx.0.88 +/- 0.4) in early July than in August when the ratio approached equivalence (near approx.1). In concert, the PRI exhibited stronger responses to both zenith and azimuth angles and different values on the two growth stages. The potential of using these indices to monitor photosynthetic activities needs further investigation

  8. The Primitive Material Explorer (PriME) Mission

    NASA Astrophysics Data System (ADS)

    Cochran, Anita L.; Weaver, H. A.; Science, PriME; Engineering Teams

    2010-10-01

    The Primitive Material Explorer (PriME) Mission is a proposed Discovery mission that will rendezvous with comet 46P/Wirtanen in 2021 in order to 1) clarify the roles played by comets in the formation and evolution of the Solar System and the origin of life; 2) ascertain the bulk physical properties, the surface geology, and the sources of activity in a fresh comet nucleus; and 3) investigate the compositional diversity of primitive material in the Solar System. PriME teams an experienced group of comet scientists (led by PI Anita Cochran and by DPI Harold Weaver) with university and industrial partners. The PriME payload accomplishes the mission objectives with only three instruments. MASPEX (MAss Spectrometer for Planetary EXploration) has higher mass resolution and is more sensitive than any mass spectrometer ever flown. MASPEX will measure D/H in H2O, noble gases, isotopes of many species, and complex molecular compounds to test solar nebula models and the role comets played in delivering water and other biologically important materials throughout the Solar System. The VIS (Visible Imaging System), consisting of a Narrow Angle Camera (NAC) and Wide-Angle Camera (WAC), will constrain the conditions under which the building blocks of the outer Solar System were assembled by measuring key physical properties of the nucleus of 46P/Wirtanen. Using the radio antenna and close flybys of the nucleus, PriME will determine the mass of the nucleus to an accuracy of 1% and the bulk density and average porosity of the nucleus to better than 5%. All spacecraft subsystems have significant planetary flight heritage. The spacecraft is a high-heritage derivative of the Kepler and Deep Impact spacecrafts, compatible with the three launch vehicle families specified in the Discovery Announcement of Opportunity.

  9. The Importance of PRI Therapy for the Pastoral Counsellor

    PubMed Central

    2009-01-01

    It is not always easy for pastoral counsellors to help people change. Often people have become stuck in their ways. Recent developments in the field of brain research help explain why change is difficult. This article discusses Past Reality Integration Therapy (PRI), a psychotherapeutic method that integrates recent findings of brain research and offers an important addition to the work of (pastoral) counsellors and psychotherapists. The use of this approach with Dutch students in their pastoral training is presented. Furthermore the importance of this new method for counsellors themselves, their clients and their work is discussed and some overall conclusions about the method and its practical application are presented. PMID:20835380

  10. Diffuse sky radiation influences the relationship between canopy PRI and shadow fraction

    NASA Astrophysics Data System (ADS)

    Mõttus, Matti; Takala, Tuure L. H.; Stenberg, Pauline; Knyazikhin, Yuri; Yang, Bin; Nilson, Tiit

    2015-07-01

    The Photochemical Reflectance Index (PRI) of green leaves is an indicator of photosynthetic downregulation: when the photosynthetic apparatus is close to the saturation limit, PRI becomes dependent on light conditions. Therefore, by measuring the PRI of leaves under different local irradiance conditions, it should be possible to determine the saturation level of the leaves and obtain information on the light use efficiency (LUE) of a vegetation canopy. The dependence of PRI on the ratio of sunlit to shaded foliage (quantified by the canopy shadow fraction) in the field of view of an instrument has been used to remotely measure canopy LUE on clear days. However, besides photosynthetic downregulation, the dependence of canopy PRI on shadow fraction is affected by the blue sky radiation caused by scattering in the atmosphere. To quantify this effect on remotely sensed PRI, we present the underlying definitions relating leaf and canopy PRI and perform the required calculations for typical midsummer conditions in Central Finland. We demonstrate that the effect of blue sky radiation on the variation of PRI with canopy shadow fraction is similar in shape and magnitude to that of LUE variations reported in literature.

  11. Three causes of variation in the photochemical reflectance index (PRI) in evergreen conifers.

    PubMed

    Wong, Christopher Y S; Gamon, John A

    2015-04-01

    The photochemical reflectance index (PRI) reflects diurnal xanthophyll cycle activity and is also influenced by seasonally changing carotenoid : Chl pigment ratios. Both changing pigment pools and xanthophyll cycle activity contribute to photoprotection in evergreen conifers exposed to boreal winters, but they operate over different timescales, and their relative contribution to the PRI signal has often been unclear. To clarify these responses and their contribution to the PRI signal, leaf PRI, pigment composition, temperature and irradiance were monitored over 2 yr for two evergreen conifers (Pinus contorta and Pinus ponderosa) in a boreal climate. PRI was affected by three distinct processes operating over different timescales and exhibiting contrasting spectral responses. Over the 2 yr study period, the greatest change in PRI resulted from seasonally changing carotenoid : Chl pigment ratios, followed by a previously unreported shifting leaf albedo during periods of deep cold. Remarkably, the smallest change was attributable to the xanthophyll cycle. To properly distinguish these three effects, interpretation of PRI must consider temporal context, physiological responses to evolving environmental conditions, and spectral response. Consideration of the separate mechanisms affecting PRI over different timescales could greatly improve efforts to monitor changing photosynthetic activity using optical remote sensing.

  12. PriC-mediated DNA replication restart requires PriC complex formation with the single-stranded DNA-binding protein.

    PubMed

    Wessel, Sarah R; Marceau, Aimee H; Massoni, Shawn C; Zhou, Ruobo; Ha, Taekjip; Sandler, Steven J; Keck, James L

    2013-06-14

    Frequent collisions between cellular DNA replication complexes (replisomes) and obstacles such as damaged DNA or frozen protein complexes make DNA replication fork progression surprisingly sporadic. These collisions can lead to the ejection of replisomes prior to completion of replication, which, if left unrepaired, results in bacterial cell death. As such, bacteria have evolved DNA replication restart mechanisms that function to reload replisomes onto abandoned DNA replication forks. Here, we define a direct interaction between PriC, a key Escherichia coli DNA replication restart protein, and the single-stranded DNA-binding protein (SSB), a protein that is ubiquitously associated with DNA replication forks. PriC/SSB complex formation requires evolutionarily conserved residues from both proteins, including a pair of Arg residues from PriC and the C terminus of SSB. In vitro, disruption of the PriC/SSB interface by sequence changes in either protein blocks the first step of DNA replication restart, reloading of the replicative DnaB helicase onto an abandoned replication fork. Consistent with the critical role of PriC/SSB complex formation in DNA replication restart, PriC variants that cannot bind SSB are non-functional in vivo. Single-molecule experiments demonstrate that PriC binding to SSB alters SSB/DNA complexes, exposing single-stranded DNA and creating a platform for other proteins to bind. These data lead to a model in which PriC interaction with SSB remodels SSB/DNA structures at abandoned DNA replication forks to create a DNA structure that is competent for DnaB loading.

  13. New insights into pri-miRNA processing and accumulation in plants.

    PubMed

    Zhang, Shuxin; Liu, Yuhui; Yu, Bin

    2015-01-01

    MicroRNAs (miRNAs) regulate many biological processes such as development, metabolism, and others. They are processed from their primary transcripts called primary miRNA transcripts (pri-miRNAs) by the processor complex containing the RNAse III enzyme, DICER-LIKE1 (DCL1), in plants. Consequently, miRNA biogenesis is controlled through altering pri-miRNA accumulation and processing, which is crucial for plant development and adaptation to environmental changes. Plant pri-miRNAs are transcribed by DNA-dependent RNA polymerase II (Pol II) and their levels are determined through transcription and degradation, whereas pri-miRNA processing is affected by its structure, splicing, alternative splicing, loading to the processor and the processor activity, which involve in many accessory proteins. Here, we summarize recent progresses related to pri-miRNA transcription, stability, and processing in plants.

  14. Involvement of histidine in complex formation of PriB and single-stranded DNA.

    PubMed

    Fujiyama, Saki; Abe, Yoshito; Takenawa, Taichi; Aramaki, Takahiko; Shioi, Seijiro; Katayama, Tsutomu; Ueda, Tadashi

    2014-02-01

    PriB is a basic 10-kDa protein that acts as a facilitator in PriA-dependent replication restart in Escherichia coli. PriB has an OB-fold dimer structure and exhibits single-stranded DNA (ssDNA)-binding activities similar to single-stranded binding protein (SSB). In this study, we examined PriB's interaction with ssDNA (oligo-dT35, -dT15, and -dT7) using heteronuclear NMR analysis. Interestingly, (1)H or (15)N chemical shift changes of the PriB main-chain showed two distinct modes using oligo-dT35. The chemical shift perturbation sites in the primary mode were consistent with the main contact site in PriB-ssDNA, which was previously determined by crystal structure analysis. The results also suggested that approximately 8nt in ssDNA was the main contact site to PriB. In the secondary mode, residues in the α-helix region (His57-Ser65) and in β4-loop3-β5 were mainly perturbed. On the other hand, we examined the state of ssDNA by FRET using 5'-Cy3- and 3'-Cy5-modified oligo-dT35. As the PriB concentration increased, two-step saturation curves were observed in the FRET assay, suggesting a compact structure of ssDNA. Moreover, we confirmed two-step PriB binding to oligo-dT35 using EMSA. The pH dependence of FRET suggested contribution of the His residues. Therefore, we prepared His mutants of PriB and found that His64 in the α-helix region contributed to the second interaction between PriB and ssDNA using FRET and EMSA. Thus, from a structural standpoint, we suggested the role of His64 on the compactness of the PriB-ssDNA complex and on the positive cooperativity of PriB.

  15. Correcting the relationship between PRI and shadow fraction for the blue sky effect

    NASA Astrophysics Data System (ADS)

    Mõttus, Matti

    2016-04-01

    The Photochemical Reflectance Index (PRI) is defined as the normalized difference ratio of leaf reflectance at two specific wavelengths in the green spectral region. Its value depends on the status of leaf carotenoid content, and especially that of the xanthophyll cycle pigments. Due to the dependence on the xanthophyll cycle, when the photosynthetic apparatus of green leaves is close to the saturation limit, their PRI becomes dependent on light conditions. Therefore, by measuring the PRI of leaves in the same canopy under different local irradiance conditions on a sunny day, it should be possible to determine the saturation level of the leaves. In turn, this gives information on the light use efficiency (LUE) of the vegetation canopy. The average light conditions of visible foliage elements are often quantified with the shadow fraction -- the fraction of visible foliage not lit by direct sunlight. The dependence of PRI on the shadow fraction has been used to remotely measure canopy LUE on clear days. Variations in shadow fraction have been achieved with multiangular measurement. However, besides photosynthetic downregulation, the dependence of canopy PRI on shadow fraction is affected by the blue sky radiation caused by scattering in the atmosphere. To quantify this effect on remotely sensed PRI, we present the underlying definitions relating leaf and canopy PRI and perform the required calculations for typical midsummer conditions in Central Finland. We demonstrate that the effect of blue sky radiation on the variation of PRI with canopy shadow fraction is similar in shape and magnitude to that of LUE variations reported in literature. Next, we propose a new method to assess these PRI variations in structured vegetation. We investiagate this blue sky effect on the PRI -- shadow fraction relationship with high spatial (60 cm) and spectral (9.8 nm) resolution airborne imaging spectroscopy data from Hyytiälä, Finland. We evaluate the spectral irradiance in

  16. Monitoring seasonal and diurnal changes in photosynthetic pigments with automated PRI and NDVI sensors

    NASA Astrophysics Data System (ADS)

    Gamon, J. A.; Kovalchuck, O.; Wong, C. Y. S.; Harris, A.; Garrity, S. R.

    2015-07-01

    The vegetation indices normalized difference vegetation index (NDVI) and photochemical reflectance index (PRI) provide indicators of pigmentation and photosynthetic activity that can be used to model photosynthesis from remote sensing with the light-use-efficiency model. To help develop and validate this approach, reliable proximal NDVI and PRI sensors have been needed. We tested new NDVI and PRI sensors, "spectral reflectance sensors" (SRS sensors; recently developed by Decagon Devices, during spring activation of photosynthetic activity in evergreen and deciduous stands. We also evaluated two methods of sensor cross-calibration - one that considered sky conditions (cloud cover) at midday only, and another that also considered diurnal sun angle effects. Cross-calibration clearly affected sensor agreement with independent measurements, with the best method dependent upon the study aim and time frame (seasonal vs. diurnal). The seasonal patterns of NDVI and PRI differed for evergreen and deciduous species, demonstrating the complementary nature of these two indices. Over the spring season, PRI was most strongly influenced by changing chlorophyll : carotenoid pool sizes, while over the diurnal timescale, PRI was most affected by the xanthophyll cycle epoxidation state. This finding demonstrates that the SRS PRI sensors can resolve different processes affecting PRI over different timescales. The advent of small, inexpensive, automated PRI and NDVI sensors offers new ways to explore environmental and physiological constraints on photosynthesis, and may be particularly well suited for use at flux tower sites. Wider application of automated sensors could lead to improved integration of flux and remote sensing approaches for studying photosynthetic carbon uptake, and could help define the concept of contrasting vegetation optical types.

  17. Monitoring seasonal and diurnal changes in photosynthetic pigments with automated PRI and NDVI sensors

    NASA Astrophysics Data System (ADS)

    Gamon, J. A.; Kovalchuk, O.; Wong, C. Y. S.; Harris, A.; Garrity, S. R.

    2015-02-01

    The vegetation indices normalized difference vegetation index (NDVI) and photochemical reflectance index (PRI) provide indicators of pigmentation and photosynthetic activity that can be used to model photosynthesis from remote sensing with the light-use efficiency model. To help develop and validate this approach, reliable proximal NDVI and PRI sensors have been needed. We tested new NDVI and PRI sensors, "SRS" sensors recently developed by Decagon Devices, during spring activation of photosynthetic activity in evergreen and deciduous stands. We also evaluated two methods of sensor cross-calibration, one that considered sky conditions (cloud cover) at midday only, and the other that also considered diurnal sun angle effects. Cross-calibration clearly affected sensor agreement with independent measurements, with the best method dependent upon the study aim and time frame (seasonal vs. diurnal). The seasonal patterns of NDVI and PRI differed for evergreen and deciduous species, demonstrating the complementary nature of these two indices. Over the spring season, PRI was most strongly influenced by changing chlorophyll : carotenoid pool sizes, while over the diurnal time scale PRI was most affected by the xanthophyll cycle epoxidation state. This finding demonstrates that the SRS PRI sensors can resolve different processes affecting PRI over different time scales. The advent of small, inexpensive, automated PRI and NDVI sensors offers new ways to explore environmental and physiological constraints on photosynthesis, and may be particularly well-suited for use at flux tower sites. Wider application of automated sensors could lead to improved integration of flux and remote sensing approaches to studying photosynthetic carbon uptake, and could help define the concept of contrasting vegetation optical types.

  18. Microprocessor dynamics shows co- and post-transcriptional processing of pri-miRNAs.

    PubMed

    Louloupi, Annita; Ntini, Evgenia; Liz, Julia; Ørom, Ulf Andersson

    2017-03-01

    miRNAs are small regulatory RNAs involved in the regulation of translation of target transcripts. miRNA biogenesis is a multi-step process starting with the cleavage of the primary miRNA transcript in the nucleus by the Microprocessor complex. Endogenous processing of pri-miRNAs is challenging to study and the in vivo kinetics of this process is not known. Here, we present a method for determining the processing kinetics of pri-miRNAs within intact cells over time using a pulse-chase approach to label transcribed RNA during 15 minutes and follow the processing within a 1-hour window after labeling with bromouridine. We show, that pri-miRNAs exhibit different processing kinetics ranging from fast over intermediate to slow processing and provide evidence that pri-miRNA processing can occur both co-transcriptionally and post-transcriptionally.

  19. Structure and Function of the PriC DNA Replication Restart Protein.

    PubMed

    Wessel, Sarah R; Cornilescu, Claudia C; Cornilescu, Gabriel; Metz, Alice; Leroux, Maxime; Hu, Kaifeng; Sandler, Steven J; Markley, John L; Keck, James L

    2016-08-26

    Collisions between DNA replication complexes (replisomes) and barriers such as damaged DNA or tightly bound protein complexes can dissociate replisomes from chromosomes prematurely. Replisomes must be reloaded under these circumstances to avoid incomplete replication and cell death. Bacteria have evolved multiple pathways that initiate DNA replication restart by recognizing and remodeling abandoned replication forks and reloading the replicative helicase. In vitro, the simplest of these pathways is mediated by the single-domain PriC protein, which, along with the DnaC helicase loader, can load the DnaB replicative helicase onto DNA bound by the single-stranded DNA (ssDNA)-binding protein (SSB). Previous biochemical studies have identified PriC residues that mediate interactions with ssDNA and SSB. However, the mechanisms by which PriC drives DNA replication restart have remained poorly defined due to the limited structural information available for PriC. Here, we report the NMR structure of full-length PriC from Cronobacter sakazakii PriC forms a compact bundle of α-helices that brings together residues involved in ssDNA and SSB binding at adjacent sites on the protein surface. Disruption of these interaction sites and of other conserved residues leads to decreased DnaB helicase loading onto SSB-bound DNA. We also demonstrate that PriC can directly interact with DnaB and the DnaB·DnaC complex. These data lead to a model in which PriC acts as a scaffold for recruiting DnaB·DnaC to SSB/ssDNA sites present at stalled replication forks.

  20. Effect and evaluation of prying action for top- and seat-angle connections

    NASA Astrophysics Data System (ADS)

    Ahmed, Ali; Hasan, Rafiq

    2015-06-01

    Nonlinear finite element (FE) static analyses of top- and seat-angle connections were performed using ABAQUS standard to investigate the influence of connection parameters and its properties on prying action developed due to the interaction between column flange and top angle's vertical leg. Contact phenomenon between two interfaces with finite sliding and bolt pretension in the initial step of analysis was considered in the FE model. FE analysis results were compared with the experimental ones to examine the applicability of the FE model. Then, the location of plastic hinges in connection assemblages was investigated at the ultimate state of the connection and a parametric study was performed varying connection parameters, material properties of connection assemblages, and magnitude of bolt pretension to visualize their effects on prying force and on the position of prying force on top angle's vertical leg. Current study shows that plastic hinges not only develop at top angle's heel and bolt hole region but also in the bolt shank that differs from some assumptions of power model (Kishi and Chen 1990): (1) top angle thickness and gage distance from angle heel to bolt hole center line have an distinct effect on prying action; and (2) distributed prying force developed near the region of the top edge of tension angle's leg adjacent to column flange can contribute to the failure of the connection. Finally, a mathematical formulation to identify the location of prying force action point is proposed.

  1. Structural and functional characterization of the CAP domain of pathogen-related yeast 1 (Pry1) protein

    PubMed Central

    Darwiche, Rabih; Kelleher, Alan; Hudspeth, Elissa M.; Schneiter, Roger; Asojo, Oluwatoyin A.

    2016-01-01

    The production, crystal structure, and functional characterization of the C-terminal cysteine-rich secretory protein/antigen 5/pathogenesis related-1 (CAP) domain of pathogen-related yeast protein-1 (Pry1) from Saccharomyces cerevisiae is presented. The CAP domain of Pry1 (Pry1CAP) is functional in vivo as its expression restores cholesterol export to yeast mutants lacking endogenous Pry1 and Pry2. Recombinant Pry1CAP forms dimers in solution, is sufficient for in vitro cholesterol binding, and has comparable binding properties as full-length Pry1. Two crystal structures of Pry1CAP are reported, one with Mg2+ coordinated to the conserved CAP tetrad (His208, Glu215, Glu233 and His250) in spacegroup I41 and the other without divalent cations in spacegroup P6122. The latter structure contains four 1,4-dioxane molecules from the crystallization solution, one of which sits in the cholesterol binding site. Both structures reveal that the divalent cation and cholesterol binding sites are connected upon dimerization, providing a structural basis for the observed Mg2+-dependent sterol binding by Pry1. PMID:27344972

  2. Structural and functional characterization of the CAP domain of pathogen-related yeast 1 (Pry1) protein

    NASA Astrophysics Data System (ADS)

    Darwiche, Rabih; Kelleher, Alan; Hudspeth, Elissa M.; Schneiter, Roger; Asojo, Oluwatoyin A.

    2016-06-01

    The production, crystal structure, and functional characterization of the C-terminal cysteine-rich secretory protein/antigen 5/pathogenesis related-1 (CAP) domain of pathogen-related yeast protein-1 (Pry1) from Saccharomyces cerevisiae is presented. The CAP domain of Pry1 (Pry1CAP) is functional in vivo as its expression restores cholesterol export to yeast mutants lacking endogenous Pry1 and Pry2. Recombinant Pry1CAP forms dimers in solution, is sufficient for in vitro cholesterol binding, and has comparable binding properties as full-length Pry1. Two crystal structures of Pry1CAP are reported, one with Mg2+ coordinated to the conserved CAP tetrad (His208, Glu215, Glu233 and His250) in spacegroup I41 and the other without divalent cations in spacegroup P6122. The latter structure contains four 1,4-dioxane molecules from the crystallization solution, one of which sits in the cholesterol binding site. Both structures reveal that the divalent cation and cholesterol binding sites are connected upon dimerization, providing a structural basis for the observed Mg2+-dependent sterol binding by Pry1.

  3. Diurnal and Directional Responses of Chlorophyll Fluorescence and the PRI in a Cornfield

    NASA Technical Reports Server (NTRS)

    Middleton, Elizabeth; Cheng, Y. B.; Corp, L.; Campbell, P.; Kustas, W.

    2010-01-01

    Determining the health and vigor of vegetation using high spectral resolution remote sensing is an important goal which has application to monitoring agriculture and ecosystem productivity and carbon exchange. Two spectral indices used to assess whether vegetation is performing near-optimally or exhibiting symptoms of environmental stress (e.g., drought or nutrient deficiency, non-optimal temperatures, etc.) are the Photochemical Reflectance Index (PRI) and solar-induced red and far-red Chlorophyll Fluorescence (Fs). Both the PRI and Fs capture the dynamics of photoprotection mechanisms within green foliage: the PRI is based on the association of the reflected radiation in the green spectrum with the xanthophyll cycle, whereas Fs measures the emitted radiation in the red and far-red spectrum. Fs was determined from retrievals in the atmospheric oxygen absorption features centered at 688 and 760 nm using a modified Fraunhofer Line Depth (FLD) method. We previously demonstrated diurnal and seasonal PRI differences for sunlit vs. shaded foliage in a conifer forest canopy, as expressed in the hotspot and darkspot of the Bidirectional Reflectance Function (BRF). In a USDA-ARS experimental field site located in Beltsville, MD, USA, measurements were acquired over a corn crop from a nadir view in 2008 with an ASD FieldSpec Pro (Analytical Spectral Devices, Inc., Boulder, CO, USA) to study the behavior of the PRI for sunlit and shaded foliage as captured in reflectance variations associated with the BRF, in a I m tall canopy in the vegetative growth stage. Those observations were compared to simulations obtained from two radiative transfer models. Measurements were then acquired to examine whether the PRI and Fs were influenced by view zenith and azimuth geometries at different times of day. Those measurements were made in 2010 with the Ocean Optics USB4000 Miniature Fiber Optic Spectrometer (Ocean Optics Inc., Dunedin, Florida, USA) at several times during the day on

  4. Photochemical Reflectance Index (PRI) and remote sensing of plant CO2 uptake

    NASA Astrophysics Data System (ADS)

    Penuelas, J.; Garbulsky, M. F.; Filella, I.

    2011-12-01

    An accurate continuous quantification of the role of terrestrial ecosystems as carbon sinks everywhere constitutes a key issue in the face of ongoing environmental disturbance and climate change. The emerging consistency of the relationship between Photochemical Reflectance Index (PRI) and light use efficiency at the leaf, canopy and ecosystem scales offers promising prospects for continuous global monitoring of plant primary productivity from space. We will present and discuss this consistency. This reflectance index is based on the short term reversible xanthophyll pigment changes accompanying plant stress. It also behaves as an index of the chlorophyll:carotenoid ratios and therefore of the photosynthetic activities associated with their changes with leaf development, aging or stress at longer term. At the leaf and canopy levels, the PRI has been extensively found adequate to estimate LUE and thus photosynthetic performance, i.e. gross primary productivity, and its use has been extended increasingly in the last few years both in natural and semi-natural vegetation and in crops. The results of these studies confirm an exponential relationship between LUE and PRI over a wide range of species and conditions, hence suggesting that the overall photosynthetic system is often sufficiently regulated to maintain consistent relationships between the pigment, morphological and physiological changes linked to PRI and the changes in CO2 fixation. In a further step forward, with the availability of the MODIS sensor on TERRA and AQUA satellites, PRI is now increasingly used also at the ecosystem scale. The results of our study comparing PRI data from MODIS and CO2 exchange data from eddy covariance towers show that there may even be a common exponential relationship for all of forests. The emerging consistency of the relationship between PRI, LUE and ecosystem CO2 uptake increasingly found in these studies suggests a surprising degree of "functional convergence" of biochemical

  5. Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs

    PubMed Central

    Szarzynska, Bogna; Sobkowiak, Lukasz; Pant, Bikram Datt; Balazadeh, Salma; Scheible, Wolf-Rüdiger; Mueller-Roeber, Bernd; Jarmolowski, Artur; Szweykowska-Kulinska, Zofia

    2009-01-01

    Arabidopsis thaliana HYL1 is a nuclear double-stranded RNA-binding protein involved in the maturation of pri-miRNAs. A quantitative real-time PCR platform for parallel quantification of 176 pri-miRNAs was used to reveal strong accumulation of 57 miRNA precursors in the hyl1 mutant that completely lacks HYL1 protein. This approach enabled us for the first time to pinpoint particular members of MIRNA family genes that require HYL1 activity for efficient maturation of their precursors. Moreover, the accumulation of miRNA precursors in the hyl1 mutant gave us the opportunity to carry out 3′ and 5′ RACE experiments which revealed that some of these precursors are of unexpected length. The alignment of HYL1-dependent miRNA precursors to A. thaliana genomic sequences indicated the presence of introns in 12 out of 20 genes studied. Some of the characterized intron-containing pri-miRNAs undergo alternative splicing such as exon skipping or usage of alternative 5′ splice sites suggesting that this process plays a role in the regulation of miRNA biogenesis. In the hyl1 mutant intron-containing pri-miRNAs accumulate alongside spliced pri-miRNAs suggesting the recruitment of HYL1 into the miRNA precursor maturation pathway before their splicing occurs. PMID:19304749

  6. Fluorescence, PRI and canopy temperature for water stress detection in cereal crops

    NASA Astrophysics Data System (ADS)

    Panigada, C.; Rossini, M.; Meroni, M.; Cilia, C.; Busetto, L.; Amaducci, S.; Boschetti, M.; Cogliati, S.; Picchi, V.; Pinto, F.; Marchesi, A.; Colombo, R.

    2014-08-01

    Narrow-band multispectral remote sensing techniques and thermal imagery were investigated for water stress detection in cereal crops. Visible and near infrared AISA Eagle (Specim, Finland) and thermal AHS-160 (Sensytech Inc., USA) imageries were acquired with an airborne survey on a farm-level experimental site where maize (Zea mays L.) and sorghum (Sorghum bicolor L.) were grown with three different irrigation treatments. Vegetation biophysical and eco-physiological measurements were collected concurrently with the airborne campaign. Leaf fluorescence yield (ΔF/Fm‧) resulted to be a good indirect measure of water stress. Therefore, ΔF/Fm‧ measurements were compared against remotely sensed indicators: (i) the Photochemical Reflectance Index (PRI), (ii) the sun-induced chlorophyll fluorescence at 760 nm (F760), retrieved by the Fraunhofer line depth method and (iii) the canopy temperature (TC) calculated decoupling soil and vegetation contributions. TC was related to ΔF/Fm‧ with the highest determination coefficient (R2 = 0.65), followed by PRI586 (reference band at 586 nm) (R2 = 0.51). The relationship with F760 was significant but weaker (R2 = 0.36). The coefficient of determination increased up to 0.54 when pigment concentration was considered by multiplying ΔF/Fm‧ and chlorophyll content, confirming the close relationship between passive fluorescence signal, pigment content and light photosystem efficiency. PRI586, F760 and TC maps were produced in maize and sorghum plots. The differences in the average values of PRI586, F760 and TC extracted from the plots with different water treatments showed that water treatments were well discriminated in maize plots by the three remotely sensed indicators. This was confirmed by the visual observation of the PRI586, F760 and TC maps, while in sorghum plots, F760 and TC appeared more sensitive to water stress compared to PRI586.

  7. Functional interactions between polypyrimidine tract binding protein and PRI peptide ligand containing proteins.

    PubMed

    Coelho, Miguel B; Ascher, David B; Gooding, Clare; Lang, Emma; Maude, Hannah; Turner, David; Llorian, Miriam; Pires, Douglas E V; Attig, Jan; Smith, Christopher W J

    2016-08-15

    Polypyrimidine tract binding protein (PTBP1) is a heterogeneous nuclear ribonucleoprotein (hnRNP) that plays roles in most stages of the life-cycle of pre-mRNA and mRNAs in the nucleus and cytoplasm. PTBP1 has four RNA binding domains of the RNA recognition motif (RRM) family, each of which can bind to pyrimidine motifs. In addition, RRM2 can interact via its dorsal surface with proteins containing short peptide ligands known as PTB RRM2 interacting (PRI) motifs, originally found in the protein Raver1. Here we review our recent progress in understanding the interactions of PTB with RNA and with various proteins containing PRI ligands.

  8. Prion-like Nanofibrils of Small Molecules (PriSM) Selectively Inhibit Cancer Cells by Impeding Cytoskeleton Dynamics*

    PubMed Central

    Kuang, Yi; Long, Marcus J. C.; Zhou, Jie; Shi, Junfeng; Gao, Yuan; Xu, Chen; Hedstrom, Lizbeth; Xu, Bing

    2014-01-01

    Emerging evidence reveals that prion-like structures play important roles to maintain the well-being of cells. Although self-assembly of small molecules also affords prion-like nanofibrils (PriSM), little is known about the functions and mechanisms of PriSM. Previous works demonstrated that PriSM formed by a dipeptide derivative selectively inhibiting the growth of glioblastoma cells over neuronal cells and effectively inhibiting xenograft tumor in animal models. Here we examine the protein targets, the internalization, and the cytotoxicity pathway of the PriSM. The results show that the PriSM selectively accumulate in cancer cells via macropinocytosis to impede the dynamics of cytoskeletal filaments via promiscuous interactions with cytoskeletal proteins, thus inducing apoptosis. Intriguingly, Tau proteins are able to alleviate the effect of the PriSM, thus protecting neuronal cells. This work illustrates PriSM as a new paradigm for developing polypharmacological agents that promiscuously interact with multiple proteins yet result in a primary phenotype, such as cancer inhibition PMID:25157102

  9. Association of a peptoid ligand with the apical loop of pri-miR-21 inhibits cleavage by Drosha

    PubMed Central

    Diaz, Jason P.; Chirayil, Rachel; Chirayil, Sara; Tom, Martin; Head, Katie J.; Luebke, Kevin J.

    2014-01-01

    We have found a small molecule that specifically inhibits cleavage of a precursor to the oncogenic miRNA, miR-21, by the microprocessor complex of Drosha and DGCR8. We identified novel ligands for the apical loop of this precursor from a screen of 14,024 N-substituted oligoglycines (peptoids) in a microarray format. Eight distinct compounds with specific affinity were obtained, three having affinities for the targeted loop in the low micromolar range and greater than 15-fold discrimination against a closely related hairpin. One of these compounds completely inhibits microprocessor cleavage of a miR-21 primary transcript at concentrations at which cleavage of another miRNA primary transcript, pri-miR-16, is little affected. The apical loop of pri-miR-21, placed in the context of pri-miR-16, is sufficient for inhibition of microprocessor cleavage by the peptoid. This compound also inhibits cleavage of pri-miR-21 containing the pri-miR-16 apical loop, suggesting an additional site of association within pri-miR-21. The reported peptoid is the first example of a small molecule that inhibits microprocessor cleavage by binding to the apical loop of a pri-miRNA. PMID:24497550

  10. Prion-like nanofibrils of small molecules (PriSM) selectively inhibit cancer cells by impeding cytoskeleton dynamics.

    PubMed

    Kuang, Yi; Long, Marcus J C; Zhou, Jie; Shi, Junfeng; Gao, Yuan; Xu, Chen; Hedstrom, Lizbeth; Xu, Bing

    2014-10-17

    Emerging evidence reveals that prion-like structures play important roles to maintain the well-being of cells. Although self-assembly of small molecules also affords prion-like nanofibrils (PriSM), little is known about the functions and mechanisms of PriSM. Previous works demonstrated that PriSM formed by a dipeptide derivative selectively inhibiting the growth of glioblastoma cells over neuronal cells and effectively inhibiting xenograft tumor in animal models. Here we examine the protein targets, the internalization, and the cytotoxicity pathway of the PriSM. The results show that the PriSM selectively accumulate in cancer cells via macropinocytosis to impede the dynamics of cytoskeletal filaments via promiscuous interactions with cytoskeletal proteins, thus inducing apoptosis. Intriguingly, Tau proteins are able to alleviate the effect of the PriSM, thus protecting neuronal cells. This work illustrates PriSM as a new paradigm for developing polypharmacological agents that promiscuously interact with multiple proteins yet result in a primary phenotype, such as cancer inhibition.

  11. Dimeric structure of the N-terminal domain of PriB protein from Thermoanaerobacter tengcongensis solved ab initio

    SciTech Connect

    Liebschner, Dorothee; Brzezinski, Krzysztof; Dauter, Miroslawa; Dauter, Zbigniew; Nowak, Marta; Kur, Józef; Olszewski, Marcin

    2012-12-01

    The N-terminal domain of the PriB protein from the thermophilic bacterium T. tengcongensis (TtePriB) was expressed and its crystal structure has been solved at the atomic resolution of 1.09 Å by direct methods. PriB is one of the components of the bacterial primosome, which catalyzes the reactivation of stalled replication forks at sites of DNA damage. The N-terminal domain of the PriB protein from the thermophilic bacterium Thermoanaerobacter tengcongensis (TtePriB) was expressed and its crystal structure was solved at the atomic resolution of 1.09 Å by direct methods. The protein chain, which encompasses the first 104 residues of the full 220-residue protein, adopts the characteristic oligonucleotide/oligosaccharide-binding (OB) structure consisting of a five-stranded β-barrel filled with hydrophobic residues and equipped with four loops extending from the barrel. In the crystal two protomers dimerize, forming a six-stranded antiparallel β-sheet. The structure of the N-terminal OB domain of T. tengcongensis shows significant differences compared with mesophile PriBs. While in all other known structures of PriB a dimer is formed by two identical OB domains in separate chains, TtePriB contains two consecutive OB domains in one chain. However, sequence comparison of both the N-terminal and the C-terminal domains of TtePriB suggests that they have analogous structures and that the natural protein possesses a structure similar to a dimer of two N-terminal domains.

  12. Remote detection of water stress conditions via a diurnal photochemical reflectance index (PRI) improves yield prediction in rainfed wheat

    NASA Astrophysics Data System (ADS)

    Magney, T. S.; Vierling, L. A.; Eitel, J.

    2014-12-01

    Employing remotely sensed techniques to quantify the existence and magnitude of midday photosynthetic downregulation using the photochemical reflectance index (PRI) may reveal new information about plant responses to abiotic stressors in space and time. However, the interpretation and application of the PRI can be confounded because of its sensitivity to several variables changing at the diurnal (e.g., irradiation, shadow fraction) and seasonal (e.g., leaf area, chlorophyll and carotene pigment concentrations, irradiation) time scales. We explored different techniques to correct the PRI for variations in canopy structure and relative chlorophyll content (ChlR) using highly temporally resolved (frequency = five minutes) in-situ radiometric measurements of PRI and the Normalized Difference Vegetation Index (NDVI) over eight soft white spring wheat (Triticum aestivum L.)field plots under varying nitrogen and soil water conditions over two seasons. Our results suggest that the influence of seasonal variation in canopy ChlR and LAI on the diurnally measured PRI (PRIdiurnal) can be minimized using simple correction techniques, therefore improving the strength of PRI as a tool to quantify abiotic stressors such as daily changes in soil volumetric water content (SVWC), and vapor pressure deficit (VPD). PRIdiurnal responded strongly to available nitrogen, and linearly tracked seasonal changes in SVWC, VPD, and stomatal conductance (gc). Utilizing the PRI as an indicator of stress, yield predictions significantly over greenness indices such as the NDVI. This study provides insight towards the future interpretation and scaling of PRI to quantify rapid changes in photosynthesis, and as an indicator of plant stress.

  13. Prion-like nanofibrils of small molecules (PriSM): A new frontier at the intersection of supramolecular chemistry and cell biology.

    PubMed

    Zhou, Jie; Du, Xuewen; Xu, Bing

    2015-01-01

    Formed by non-covalent interactions and not defined at genetic level, the assemblies of small molecules in biology are complicated and less explored. A common morphology of the supramolecular assemblies of small molecules is nanofibrils, which coincidentally resembles the nanofibrils formed by proteins such as prions. So these supramolecular assemblies are termed as prion-like nanofibrils of small molecules (PriSM). Emerging evidence from several unrelated fields over the past decade implies the significance of PriSM in biology and medicine. This perspective aims to highlight some recent advances of the research on PriSM. This paper starts with description of the intriguing similarities between PriSM and prions, discusses the paradoxical features of PriSM, introduces the methods for elucidating the biological functions of PriSM, illustrates several examples of beneficial aspects of PriSM, and finishes with the promises and current challenges in the research of PriSM. We anticipate that the research of PriSM will contribute to the fundamental understanding at the intersection of supramolecular chemistry and cell biology and ultimately lead to a new paradigm of molecular (or supramolecular) therapeutics for biomedicine.

  14. An aromatic-rich loop couples DNA binding and ATP hydrolysis in the PriA DNA helicase.

    PubMed

    Windgassen, Tricia A; Keck, James L

    2016-11-16

    Helicases couple ATP hydrolysis to nucleic acid binding and unwinding via molecular mechanisms that remain poorly defined for most enzyme subfamilies within the superfamily 2 (SF2) helicase group. A crystal structure of the PriA SF2 DNA helicase, which governs restart of prematurely terminated replication processes in bacteria, revealed the presence of an aromatic-rich loop (ARL) on the presumptive DNA-binding surface of the enzyme. The position and sequence of the ARL was similar to loops known to couple ATP hydrolysis with DNA binding in a subset of other SF2 enzymes, however, the roles of the ARL in PriA had not been investigated. Here, we show that changes within the ARL sequence uncouple PriA ATPase activity from DNA binding. In vitro protein-DNA crosslinking experiments define a residue- and nucleotide-specific interaction map for PriA, showing that the ARL binds replication fork junctions whereas other sites bind the leading or lagging strands. We propose that DNA binding to the ARL allosterically triggers ATP hydrolysis in PriA. Additional SF2 helicases with similarly positioned loops may also couple DNA binding to ATP hydrolysis using related mechanisms.

  15. The crystal structure of Neisseria gonorrhoeae PriB reveals mechanistic differences among bacterial DNA replication restart pathways

    SciTech Connect

    Dong, Jinlan; George, Nicholas P.; Duckett, Katrina L.; DeBeer, Madeleine A.P.; Lopper, Matthew E.

    2010-05-25

    Reactivation of repaired DNA replication forks is essential for complete duplication of bacterial genomes. However, not all bacteria encode homologs of the well-studied Escherichia coli DNA replication restart primosome proteins, suggesting that there might be distinct mechanistic differences among DNA replication restart pathways in diverse bacteria. Since reactivation of repaired DNA replication forks requires coordinated DNA and protein binding by DNA replication restart primosome proteins, we determined the crystal structure of Neisseria gonorrhoeae PriB at 2.7 {angstrom} resolution and investigated its ability to physically interact with DNA and PriA helicase. Comparison of the crystal structures of PriB from N. gonorrhoeae and E. coli reveals a well-conserved homodimeric structure consisting of two oligosaccharide/oligonucleotide-binding (OB) folds. In spite of their overall structural similarity, there is significant species variation in the type and distribution of surface amino acid residues. This correlates with striking differences in the affinity with which each PriB homolog binds single-stranded DNA and PriA helicase. These results provide evidence that mechanisms of DNA replication restart are not identical across diverse species and that these pathways have likely become specialized to meet the needs of individual organisms.

  16. An aromatic-rich loop couples DNA binding and ATP hydrolysis in the PriA DNA helicase

    PubMed Central

    Windgassen, Tricia A.; Keck, James L.

    2016-01-01

    Helicases couple ATP hydrolysis to nucleic acid binding and unwinding via molecular mechanisms that remain poorly defined for most enzyme subfamilies within the superfamily 2 (SF2) helicase group. A crystal structure of the PriA SF2 DNA helicase, which governs restart of prematurely terminated replication processes in bacteria, revealed the presence of an aromatic-rich loop (ARL) on the presumptive DNA-binding surface of the enzyme. The position and sequence of the ARL was similar to loops known to couple ATP hydrolysis with DNA binding in a subset of other SF2 enzymes, however, the roles of the ARL in PriA had not been investigated. Here, we show that changes within the ARL sequence uncouple PriA ATPase activity from DNA binding. In vitro protein-DNA crosslinking experiments define a residue- and nucleotide-specific interaction map for PriA, showing that the ARL binds replication fork junctions whereas other sites bind the leading or lagging strands. We propose that DNA binding to the ARL allosterically triggers ATP hydrolysis in PriA. Additional SF2 helicases with similarly positioned loops may also couple DNA binding to ATP hydrolysis using related mechanisms. PMID:27484483

  17. Explaining the variability of Photochemical Reflectance Index (PRI): deconvolution of variability related to Light Use Efficiency and Canopy attributes.

    NASA Astrophysics Data System (ADS)

    Merlier, Elodie; Hmimina, Gabriel; Dufrêne, Eric; Soudani, Kamel

    2014-05-01

    The Photochemical Reflectance Index (PRI) was designed as a proxy of the state of xanthophyll cycle which is used as a response of plants to excess of light (Gamon et al., 1990; 1992). Strong relationships between PRI and LUE were shown at leaf and canopy scales and over a wide range of species (Garbulsky et al., 2011). However, its use at canopy scale was shown to be significantly hampered by effects of confounding factors such as the PRI sensitivity to leaf pigment content (Gamon et al. 2001; Nakaji et al. 2006) and to canopy structure (Hilker et al. 2008). Several approaches aimed at correcting such effects and recent works focused on the deconvolution of LUE related and LUE unrelated PRI variability (Rahimzadeh-Bajgiran et al. 2012).In this study, the PRI variability at canopy scale is investigated over two years on three species (Fagus sylvatica, Quercus robur and Pinus sylvestris) growing under two water regimes. At daily scale, PRI variability is mainly explained by radiation conditions. As already reported at leaf scale in Hmimina et al. (2014), analysis of PRI responses to incoming photosynthetically active radiation over seasonal scale allowed to separate two sources of variability : a constitutive variability mainly related to canopy structure and leaf chlorophyll content and a facultative variability mainly related to LUE and soil moisture content. These results highlight the composite nature of PRI signal measured at canopy scale and the importance of disentangling its sources of variability in order to accurately assess ecosystem light use efficiency. Gamon JA, Field CB, Bilger W, Björkman O, Fredeen AL, Peñuelas J. 1990. Remote sensing of the xanthophyll cycle and chlorophyll fluorescence in sunflower leaves and canopies. Oecologia 85, 1-7. Gamon JA, Field CB, Fredeen A AL, Thayer S. 2001. Assessing photosynthetic downregulation in sunflower stands with an optically-based model. Photosynthesis Research 67, 113-125. Gamon JA, Peñuelas J, Field CB

  18. Explaining the variability of the photochemical reflectance index (PRI) at the canopy-scale: Disentangling the effects of phenological and physiological changes.

    PubMed

    Merlier, Elodie; Hmimina, Gabriel; Dufrêne, Eric; Soudani, Kamel

    2015-10-01

    Assessing photosynthesis rates at the ecosystem scale and over large regions is important for tracking the global carbon cycle and remote sensing has provided new and useful approaches for performing this assessment. The photochemical reflectance index (PRI) is a good estimator of short-term light-use efficiency (LUE) at the leaf scale; however, confounding factors appear at larger temporal and spatial scales. In this study, canopy-scale PRI variability was investigated for three species (Fagus sylvatica L., Quercus robur L. and Pinus sylvestris L.) growing under contrasting soil moisture conditions. Throughout the growing season, no significant differences in chlorophyll content and in violaxanthin, antheraxanthin and zeaxanthin were found between species or treatments. The daily PRI vs PAR (photosynthetically active radiation) relationships were determined using continuous measurements obtained at high frequency throughout the entire growing season, from early spring budburst to later autumn senescence, and were used to deconvolute the physiological PRI variability related to LUE variations due to phenological variability and related to temporal changes in the biochemical and structural canopy attributes. The PRI vs PAR relationship is used to show that the canopy-scale PRI measured at low radiation depends on the chlorophyll content of the canopy. The range of PRI variations at an intra-daily scale and the dynamics of the xanthophyll pool do not vary between days, which suggests that the PRI responds to a xanthophyll ratio. The PAR values at PRI saturation are mainly related to the canopy chlorophyll content during budburst and senescence and to the soil moisture content when the chlorophyll content is no longer a limiting factor. This parameter is significantly lower in the oak species that experience less stress from variations in soil moisture and is species dependant. These results provide new insights regarding the analysis and the meaning of PRI

  19. Remote sensing of plant emissions of volatile isoprenoids with PRI. Prospects for upscaling (Invited)

    NASA Astrophysics Data System (ADS)

    Penuelas, J.

    2013-12-01

    Josep Peñuelas*1,2, Giovanni Marino1,2,3,4, Joan LLusia1,2, Catherine Morfopoulos1,2,5, Gerard Farre-Armengol1,2, Shawn Kefauver, Alex Guenther6 , Francesca Rapparini7 , Roger Seco1,2,6, Marc Estiarte1,2, Mónica Mejia-Chang1,2, Romà Ogaya1,2, Jordi Sardans1,2 , Andrew Turnipseed6, Peter Harley6, Osvaldo Facini7, Rita Baraldi7, Jim Greenberg6 , Iolanda Filella1,2 1 CSIC, Global Ecology Unit CREAF-CEAB-UAB, Cerdanyola del Vallés 08193, Catalonia, Spain 2 CREAF, Cerdanyola del Vallés 08193, Catalonia, Spain 3 Dipartimento di Bioscienze e Territorio, Università degli Studi del Molise, Contrada Fonte Lappone, 86090 Pesche (IS), Italy 4 Institute for Plant Protection, National Research Council, Via Madonna del Piano 10, 50019 Sesto Fiorentino (FI), Italy 5 Division of Ecology and Evolution, Imperial College, Silwood Park, Ascot, SL5 7PY, UK 6 Atmospheric Chemistry Division, National Center for Atmospheric Research, P.O. Box 3000, Boulder, CO 80307-3000, USA 7 Biometeorology Institute, IBIMET-CNR, Via P. Gobetti 101, Bologna, Italy Abstract Terrestrial plants re-emit around 1-2% of the carbon they fix as isoprene and monoterpenes. These emissions play major roles in the ecological relationships among living organisms and in atmospheric chemistry and climate, and yet their actual quantification at the ecosystem level in different regions is far from being resolved. Phenomenological models are used to estimate the emission rates, but the limited understanding of the function and regulation of these emissions leads to large uncertainties in such estimations. Many measurements have been made at the foliar but few at the ecosystem level, and those that do exist are limited in space and time. We here provide evidence that a simple remote sensing index, the photochemical reflectance index (PRI), which is indicative of light use efficiency (LUE), is a good indirect estimator of foliar isoprenoid emissions and therefore can be used to sense them remotely. These results open

  20. The N-terminal domain of DnaT, a primosomal DNA replication protein, is crucial for PriB binding and self-trimerization.

    PubMed

    Huang, Yen-Hua; Huang, Cheng-Yang

    2013-12-13

    DnaT and PriB are replication restart primosomal proteins required for re-initiating chromosomal DNA replication in bacteria. Although the interaction of DnaT with PriB has been proposed, which region of DnaT is involved in PriB binding and self-trimerization remains unknown. In this study, we identified the N-terminal domain in DnaT (aa 1-83) that is important in PriB binding and self-trimerization but not in single-stranded DNA (ssDNA) binding. DnaT and the deletion mutant DnaT42-179 protein can bind to PriB according to native polyacrylamide gel electrophoresis, Western blot analysis, and pull-down assay, whereas DnaT84-179 cannot bind to PriB. In contrast to DnaT, DnaT26-179, and DnaT42-179 proteins, which form distinct complexes with ssDNA of different lengths, DnaT84-179 forms only a single complex with ssDNA. Analysis of DnaT84-179 protein by gel filtration chromatography showed a stable monomer in solution rather than a trimer, such as DnaT, DnaT26-179, and DnaT42-179 proteins. These results constitute a pioneering study of the domain definition of DnaT. Further research can directly focus on determining how DnaT binds to the PriA-PriB-DNA tricomplex in replication restart by the hand-off mechanism.

  1. Pri-miR-17-92a transcript folds into a tertiary structure and autoregulates its processing

    PubMed Central

    Chakraborty, Saikat; Mehtab, Shabana; Patwardhan, Anand; Krishnan, Yamuna

    2012-01-01

    MicroRNAs control gene expression either by RNA transcript degradation or translational repression. Expressions of miRNAs are highly regulated in tissues, disruption of which leads to disease. How this regulation is achieved and maintained is still largely unknown. MiRNAs that reside on clustered or polycistronic transcripts represent a more complex case where individual miRNAs from a cluster are processed with different efficiencies despite being cotranscribed. To shed light on the regulatory mechanisms that might be operating in these cases, we considered the long polycistronic primary miRNA transcript pri-miR-17-92a that contains six miRNAs with diverse functions. The six miRNA domains on this cluster are differentially processed to produce varying amounts of resultant mature miRNAs in different tissues. How this is achieved is not known. We show, using various biochemical and biophysical methods coupled with mutational studies, that pri-miR-17-92a adopts a specific three-dimensional architecture that poses a kinetic barrier to its own processing. This tertiary structure could create suboptimal protein recognition sites on the pri-miRNA cluster due to higher-order structure formation. PMID:22450760

  2. mirEX: a platform for comparative exploration of plant pri-miRNA expression data.

    PubMed

    Bielewicz, Dawid; Dolata, Jakub; Zielezinski, Andrzej; Alaba, Sylwia; Szarzynska, Bogna; Szczesniak, Michal W; Jarmolowski, Artur; Szweykowska-Kulinska, Zofia; Karlowski, Wojciech M

    2012-01-01

    mirEX is a comprehensive platform for comparative analysis of primary microRNA expression data. RT-qPCR-based gene expression profiles are stored in a universal and expandable database scheme and wrapped by an intuitive user-friendly interface. A new way of accessing gene expression data in mirEX includes a simple mouse operated querying system and dynamic graphs for data mining analyses. In contrast to other publicly available databases, the mirEX interface allows a simultaneous comparison of expression levels between various microRNA genes in diverse organs and developmental stages. Currently, mirEX integrates information about the expression profile of 190 Arabidopsis thaliana pri-miRNAs in seven different developmental stages: seeds, seedlings and various organs of mature plants. Additionally, by providing RNA structural models, publicly available deep sequencing results, experimental procedure details and careful selection of auxiliary data in the form of web links, mirEX can function as a one-stop solution for Arabidopsis microRNA information. A web-based mirEX interface can be accessed at http://bioinfo.amu.edu.pl/mirex.

  3. Linking chlorophyll fluorescence, hyperspectral reflectance and plant physiological responses to detect stress using the photochemical reflectance index (PRI) (Invited)

    NASA Astrophysics Data System (ADS)

    Naumann, J. C.; Young, D.; Anderson, J.

    2009-12-01

    The concept of using vegetation as sentinels to indicate natural or anthropogenic stress is not new and could potentially provide an ideal mechanism for large-scale detection. Advances in fluorescence spectroscopy and reflectance-derived fluorescence have made possible earlier detection of stress in plants, especially before changes in chlorophyll content are visible. Our studies have been used to fuse leaf fluorescence and reflectance characteristics to remotely sense and rapidly detect vegetation stress and terrain characteristics. Laboratory studies have indicated that light-adapted fluorescence (ΔF/F‧m) measurements have been successful in all experiments at detecting stress from flooding, salinity, drought, herbicide and TNT contamination prior to visible signs of damage. ΔF/F‧m was related to plant physiological status in natural stress conditions, as seen in the relationships with stomatal conductance and photosynthesis The photochemical reflectance index (PRI) and other reflectance ratios were effective at tracking changes in ΔF/F‧m at the leaf and canopy-level scales. At the landscape-level, chlorophyll fluorescence and airborne reflectance imagery were used to evaluate spatial variations in stress in the dominant shrub on a barrier island, Myrica cerifera, during a severe drought and compared to an extremely wet year. Measurements of relative water content and the water band index (WBI970) indicated that water stress did not vary across the island. In contrast, there were significant differences in tissue chlorides across sites. Using PRI we were able to detect salinity stress across the landscape. PRI did not differ between wet and dry years. There was a positive relationship between PRI and ΔF/F‧m for M. cerifera (r2 = 0.79). The normalized difference vegetation index (NDVI), the chlorophyll index (CI) and WBI970 were higher during the wet summer but varied little across the island. PRI was not significantly related to NDVI, suggesting that

  4. Prediction of moment-rotation characteristic of top- and seat-angle bolted connection incorporating prying action

    NASA Astrophysics Data System (ADS)

    Ahmed, Ali

    2017-03-01

    Finite element (FE) analyses were performed to explore the prying influence on moment-rotation behaviour and to locate yielding zones of top- and seat-angle connections in author's past research studies. The results of those FE analyses with experimental failure strategies of the connections were used to develop failure mechanisms of top- and seat-angle connections in the present study. Then a formulation was developed based on three simple failure mechanisms considering bending and shear deformations, effects of prying action on the top angle and stiffness of the tension bolts to estimate rationally the ultimate moment M u of the connection, which is a vital parameter of the proposed four-parameter power model. Applicability of the proposed formulation is assessed by comparing moment-rotation ( M- θ r ) curves and ultimate moment capacities with those measured by experiments and estimated by FE analyses and three-parameter power model. This study shows that proposed formulation and Kishi-Chen's method both achieved close approximation driving M- θ r curves of all given connections except a few cases of Kishi-Chen model, and M u estimated by the proposed formulation is more rational than that predicted by Kishi-Chen's method.

  5. Prediction of moment-rotation characteristic of top- and seat-angle bolted connection incorporating prying action

    NASA Astrophysics Data System (ADS)

    Ahmed, Ali

    2017-02-01

    Finite element (FE) analyses were performed to explore the prying influence on moment-rotation behaviour and to locate yielding zones of top- and seat-angle connections in author's past research studies. The results of those FE analyses with experimental failure strategies of the connections were used to develop failure mechanisms of top- and seat-angle connections in the present study. Then a formulation was developed based on three simple failure mechanisms considering bending and shear deformations, effects of prying action on the top angle and stiffness of the tension bolts to estimate rationally the ultimate moment M u of the connection, which is a vital parameter of the proposed four-parameter power model. Applicability of the proposed formulation is assessed by comparing moment-rotation (M-θ r ) curves and ultimate moment capacities with those measured by experiments and estimated by FE analyses and three-parameter power model. This study shows that proposed formulation and Kishi-Chen's method both achieved close approximation driving M-θ r curves of all given connections except a few cases of Kishi-Chen model, and M u estimated by the proposed formulation is more rational than that predicted by Kishi-Chen's method.

  6. Functional study of one nucleotide mutation in pri-miR-125a coding region which related to recurrent pregnancy loss.

    PubMed

    Hu, Yi; Huo, Zheng-Hao; Liu, Chun-Mei; Liu, Shi-Guo; Zhang, Ning; Yin, Kun-Lun; Qi, Lu; Ma, Xu; Xia, Hong-Fei

    2014-01-01

    MicroRNAs (miRNAs) are short non-coding RNAs which modulate gene expression by binding to complementary segments present in the 3'UTR of the mRNAs of protein coding genes. MiRNAs play very important roles in maintaining normal human body physiology conditions, meanwhile, abnormal miRNA expressions have been found related to many human diseases spanning from psychiatric disorders to malignant cancers. Recently, emerging reports have indicated that disturbed miRNAs expression contributed to the pathogenesis of recurrent pregnancy loss (RPL). In this study, we identified a new mutation site (+29A>G, position relative to pre-miR-125a) by scanning pri-miR-125a coding region in 389 Chinese Han RPL patients. This site was co-existed with two polymorphisms (rs12976445 and rs41275794) in patients heterogeneously and changed the predicted secondary structures of pri-miR-125a. Subsequent in vitro analysis indicated that the A>G mutation reduced mature miR-125a expression, and further led to less efficient inhibition of verified target genes. Functional analysis showed that mutant pri-mir-125a can enhance endometrial stromal cells (ESCs) invasive capacity and increase the sensitivity of ESCs cells to mifepristone. Moreover, we further analyzed the possible molecular mechanism by RIP-chip assay and found that mutant pri-mir-125a disturbed the expression of miR-125a targetome, the functions of which includes embryonic development, cell proliferation, migration and invasion. These data suggest that A>G mutation in pri-miR-125a coding region contributes to the genetic predisposition to RPL by disordering the production of miR-125a, which consequently meddled in gene regulatory network between mir-125a and mRNA.

  7. pri-miR-34b/c rs4938723 polymorphism is associated with hepatocellular carcinoma risk: a case-control study in a Chinese population

    PubMed Central

    Liu, Chun-Jia; Ma, Xue-Wei; Zhang, Xue-Jun; Shen, Shi-Qiang

    2017-01-01

    Hepatocellular carcinoma (HCC) is one of the most common cancers worldwide. miR-34 induces changes of its downstream genes, and plays a key role in altering the apoptotic cycle and pathways of downstream cells, and finally influences the development of cancer. We assessed the relationship of the pri-miR-34b/c rs4938723 polymorphism with hepatocellular carcinoma risk in a Chinese population. During the period of January 2014 and December 2015, a total of 164 HCC patients and 305 healthy controls were recruited from the Inner Mongolia People’s Hospital. Genotyping of the pri-miR-34b/c rs4938723 was determined using the polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP). Using χ2 test, we observed that HCC patients were likely to have a habit of alcohol consumption (χ2 = 10.24, P = 0.001) and infect with HBV or HCV (χ2 = 128.17, P < 0.001). In co-dominant model, the CC genotype of pri-miR-34b/c rs4938723 had a significant higher risk of HCC as compared with the TT genotype, and the corresponding adjusted OR (95% CI) was 4.14 (1.91-9.75). In dominant model, we observed that the TC+CC genotype were associated with an increased risk of HCC in comparison to the TT genotype (OR = 1.67, 95% CI = 1.17-2.55). In recessive model, the CC genotype was correlated with an elevated risk of HCC when compared with the TT+TC genotype (OR = 3.46, 95% CI = 1.62-8.54). The pri-miR-34b/c rs4938723 polymorphism was associated with a higher risk of HCC in the Chinese population examined. Further large-scale and multi-center studies are required to confirm these results. PMID:28337312

  8. Zeaxanthin-independent energy quenching and alternative electron sinks cause a decoupling of the relationship between the photochemical reflectance index (PRI) and photosynthesis in an evergreen conifer during spring.

    PubMed

    Fréchette, Emmanuelle; Wong, Christopher Y S; Junker, Laura Verena; Chang, Christine Yao-Yun; Ensminger, Ingo

    2015-12-01

    In evergreen conifers, the winter down-regulation of photosynthesis and its recovery during spring are the result of a reorganization of the chloroplast and adjustments of energy-quenching mechanisms. These phenological changes may remain undetected by remote sensing, as conifers retain green foliage during periods of photosynthetic down-regulation. The aim was to assess if the timing of the spring recovery of photosynthesis and energy-quenching characteristics are accurately monitored by the photochemical reflectance index (PRI) in the evergreen conifer Pinus strobus. The recovery of photosynthesis was studied using chlorophyll fluorescence, leaf gas exchange, leaf spectral reflectance, and photosynthetic pigment measurements. To assess if climate change might affect the recovery of photosynthesis, seedlings were exposed to cold spring conditions or warm spring conditions with elevated temperature. An early spring decoupling of the relationship between photosynthesis and PRI in both treatments was observed. This was caused by differences between the timing of the recovery of photosynthesis and the timing of carotenoid and chlorophyll pool size adjustments which are the main factors controlling PRI during spring. It was also demonstrated that zeaxanthin-independent NPQ mechanisms undetected by PRI further contributed to the early spring decoupling of the PRI-LUE relationship. An important mechanism undetected by PRI seems to involve increased electron transport around photosystem I, which was a significant energy sink during the entire spring transition, particularly in needles exposed to a combination of high light and cold temperatures.

  9. Application of carbon nanosorbent for PRiME pass-through cleanup of 10 selected local anesthetic drugs in human plasma samples.

    PubMed

    Ma, Jian-Bo; Zhao, Li-Ming; Rui, Qiu-Hong; Liao, Yu-Feng; Chen, Yan-Min; Xu, Jin; Zhu, Yan; Zhao, Yong-Gang

    2017-04-01

    A novel PRiME (process, robustness, improvements, matrix effects, ease of use) pass-through cleanup procedure has been developed to improve the existing commercially available designs. Carbon nanosorbents, i.e., magnetic modified carboxyl-graphene (Mag-CG) and magnetic modified carboxyl-carbon nanotubes (Mag-CCNTs), have been synthesised and evaluated in PRiME pass-through cleanup procedure for human plasma prior to analysis of 10 selected local anesthetic drugs by liquid chromatography-tandem quadrupole mass spectrometry (LC-MS/MS). The matrix effect, an interesting phenomenon of ion suppression for local anesthetic drugs containing ester group and ion enhancement for other drugs containing acylamino group, has been minimized using carbon nanosorbents PRiME pass-through cleanup procedure. Under the optimal conditions, the obtained results show higher cleanup efficiency of the carbon nanosorbents with recoveries between 70.2% and 126%. Furthermore, the carbon nanosorbents are also evaluated for reuse up to 80-100 times. The limits of quantification (LOQs) for local anesthetic drugs are in the range of 0.024-0.15 μg/L. Validation results on linearity, specificity, accuracy, and precision, as well as the application to the analysis of lidocaine in five patients recruited from the lung cancer demonstrate the applicability to clinical studies.

  10. Transverse resistance in Y1-yPryBa2Cu3O7-δ at large praseodymium concentrations

    NASA Astrophysics Data System (ADS)

    Vovk, Ruslan V.; Khadzhai, Georgij Ya.; Dobrovolskiy, Oleksandr V.

    2014-10-01

    The effect of praseodymium doping on the transverse electrical resistance of Y1-yPryBa2Cu3O7-δ single crystals is investigated by electrical resistance measurements. The resistance curves can be fitted well to an expression accounting for the thermo-activated variable-range hopping charge transfer in conjunction with the fluctuation conductivity in the 3D Aslamazov-Larkin model. Our analysis of the Pr concentration dependence of the fitting parameters shows that in the concentration range 0.34

  11. Magnetic and electric behavior of praseodymium substituted CuPryFe2-yO4 ferrites

    NASA Astrophysics Data System (ADS)

    Farid, Muhammad Tahir; Ahmad, Ishtiaq; Kanwal, Muddassara; Murtaza, Ghulam; Ali, Irshad; Ashiq, Muhammad Naeem; Khan, Sajjad Ahmad

    2017-01-01

    Spinel ferrites with chemical formula CuPryFe2-yO4(y=0.0,0.02,0.04,0.06,0.08,0.10) were synthesized using sol-gel technique. The sintered powder characterized by X-ray diffraction (XRD), Scanning Electron Microscopy (SEM) and vibrating sample magnetometer (VSM). X-ray Diffraction analysis showed that the samples with concentration (y=0.0-0.06) have single spinel phase and the samples with concentration at y=0.08-0.10 have secondary phase (ortho ferrite phase) along spinel phase. The Lattice constant a increased with the substitution of Praseodymium (Pr) ions. The crystallite size calculated from Scherre's formula is found in the range of 53-37 nm. It is observed that DC resistivity and activation energy enhances with the substitution of Pr. The dc resistivity decreased with the increase in temperature. The conduction below Curie temperature (Tc) is due to hopping of electrons and holes, whereas, above Curie temperature it is due to polaron hopping. The decrease in Tc with increasing Pr constant may be due to the fact that Pr-Fe interactions on the B sites are weaker than Fe-Fe interaction. The saturation magnetization (Ms) and remanence (Mr) decreased where as coercivity (Hc) has been increased with the increase of Pr content. The measured parameters suggest that these materials are potential candidates for high frequency applications.

  12. Zeaxanthin-independent energy quenching and alternative electron sinks cause a decoupling of the relationship between the photochemical reflectance index (PRI) and photosynthesis in an evergreen conifer during spring

    PubMed Central

    Fréchette, Emmanuelle; Wong, Christopher Y. S.; Junker, Laura Verena; Chang, Christine Yao-Yun; Ensminger, Ingo

    2015-01-01

    In evergreen conifers, the winter down-regulation of photosynthesis and its recovery during spring are the result of a reorganization of the chloroplast and adjustments of energy-quenching mechanisms. These phenological changes may remain undetected by remote sensing, as conifers retain green foliage during periods of photosynthetic down-regulation. The aim was to assess if the timing of the spring recovery of photosynthesis and energy-quenching characteristics are accurately monitored by the photochemical reflectance index (PRI) in the evergreen conifer Pinus strobus. The recovery of photosynthesis was studied using chlorophyll fluorescence, leaf gas exchange, leaf spectral reflectance, and photosynthetic pigment measurements. To assess if climate change might affect the recovery of photosynthesis, seedlings were exposed to cold spring conditions or warm spring conditions with elevated temperature. An early spring decoupling of the relationship between photosynthesis and PRI in both treatments was observed. This was caused by differences between the timing of the recovery of photosynthesis and the timing of carotenoid and chlorophyll pool size adjustments which are the main factors controlling PRI during spring. It was also demonstrated that zeaxanthin-independent NPQ mechanisms undetected by PRI further contributed to the early spring decoupling of the PRI–LUE relationship. An important mechanism undetected by PRI seems to involve increased electron transport around photosystem I, which was a significant energy sink during the entire spring transition, particularly in needles exposed to a combination of high light and cold temperatures. PMID:26386258

  13. Conductivity of single-crystal Y1-yPryBa2Cu3O7-δ over a wide range of temperatures and Pr concentrations

    NASA Astrophysics Data System (ADS)

    Khadzhai, G. Ya.; Vovk, N. R.; Vovk, R. V.

    2014-06-01

    The in-plane electrical resistance of Y1-yPryBa2Cu3O7-δ single crystals with a high degree of perfection is studied for temperatures in the range TC-300 K, where TC ranges from 92 to 52 K, with varying praseodymium content. The experimental data are approximated by an expression that takes electron scattering on phonons and defects into account, as well as fluctuation conductivity in a 3D Aslamazov-Larkin model. According to the approximation data the Debye temperature ranges from 350-370 K, depending on the praseodymium content. The transverse coherence length is ˜1 Å.

  14. Experimental oxygen potentials for U1-yPryO2±x and thermodynamic assessment of the U-Pr-O system

    NASA Astrophysics Data System (ADS)

    McMurray, J. W.; Silva, C. M.

    2016-03-01

    Thermogravimetric analysis (TGA) was used to determine the oxygen potentials of fluorite urania-praseodymia (U1-yPryO2±x) solid solutions for y = 0.10 and 0.20 between 1000 and 1500 °C. A thermodynamic assessment of U-Pr-O system was performed using the CALPHAD (CALculation of PHAse Diagrams) method. The models well reproduce the TGA measurements and the computed phase relations are in good agreement with those proposed from an X-ray diffraction investigation.

  15. Experimental oxygen potentials of U1-yPryO2± x and thermodynamic assessment of the U-Pr-O system

    DOE PAGES

    McMurray, Jake W.; Silva, Chinthaka M.

    2015-12-09

    Thermogravimetric analysis (TGA) was used to determine the oxygen potentials of fluorite urania-praseodymia (U1-yPryO2± x) solid solutions for y = 0.10 and 0.20 between 1000 and 1500 °C. A thermodynamic assessment of U-Pr-O system was performed using the CALPHAD (CALculation of PHAse Diagrams) method. Furthermore, the models well reproduce the TGA measurements and the computed phase relations are in good agreement with those proposed from an X-ray diffraction investigation.

  16. Combined analysis of pri-miR-34b/c rs4938723 and TP53 Arg72Pro with cervical cancer risk.

    PubMed

    Yuan, Fang; Sun, Ruifen; Chen, Peng; Liang, Yundan; Ni, Shanshan; Quan, Yi; Huang, Juan; Zhang, Lin; Gao, Linbo

    2016-05-01

    miR-34 family members can form a p53-miR-34 positive feedback loop and induce apoptosis, DNA repair, angiogenesis, and cell cycle arrest. We conducted a case-control study to examine whether two polymorphisms (i.e., rs4938723 in the promoter of pri-miR-34b/c and TP53 Arg72Pro) were linked to the carcinogenesis of cervical cancer among Chinese Han women. Genotypes of the two polymorphisms in 328 cervical cancer patients and 568 control subjects were determined by using a polymerase chain reaction-restriction fragment length polymorphism assay. We found a significantly increased cervical cancer risk in the pri-miR-34b/c rs4938723 under dominant and overdominant model (CT/CC vs. TT: adjusted OR = 1.34, 95 % CI = 1.01-1.77; CT vs. TT/CC: adjusted OR = 1.37, 95 % CI = 1.05-1.80, respectively). Increased cervical cancer risks were also found in the TP53 Arg72Pro under a heterozygous comparison and overdominant model (CG vs. GG: adjusted OR = 1.44, 95 % CI = 1.06-1.95; CG vs. GG/CC: adjusted OR = 1.47, 95 % CI = 1.12-1.94, respectively). Stratification analysis showed that patients carrying the pri-miR-34b/c rs4938723 CT genotype had a significantly increased risk for developing poorly differential status and clinical stage I. Moreover, increased cancer risks were observed for the TP53 Arg72Pro polymorphism in patients with poorly differential status, clinical stage II, and without lymph node metastasis. Combined analysis revealed that the genotypes of rs4938723 CT/CC and TP53 Arg72Pro CG/CC had an increased cervical cancer risk (OR = 2.21, 95 % CI = 1.38-3.53). These findings suggest that the pri-miR-34b/c rs4938723 and TP53 Arg72Pro polymorphisms may contribute to the genesis of cervical cancer.

  17. Pri-Mir-34b/C and Tp-53 Polymorphisms are Associated With The Susceptibility of Papillary Thyroid Carcinoma

    PubMed Central

    Chen, Peng; Sun, Ruifen; Pu, Yan; Bai, Peng; Yuan, Fang; Liang, Yundan; Zhou, Bin; Wang, Yanyun; Sun, Yinghe; Zhu, Jingqiang; Zhang, Lin; Gao, Linbo

    2015-01-01

    Abstract Tumor suppressor p53 directly regulated the abundance of the miR-34b/c. The interaction might contribute to certain cancer. We hypothesized that rs4938723 in the promoter region of pri-miR-34b/c and TP-53 Arg72Pro may be related to the risk of papillary thyroid carcinoma (PTC). A total of 784 patients with PTC and 1006 healthy controls were recruited to participate in this study. The variants were discriminated using a polymerase chain reaction–restriction fragment length polymorphism method (PCR-RFLP). Additionally, the relative expression levels of miR-34b/c and TP-53 in 44 paired samples were revealed by quantitative reverse transcription polymerase chain reaction (qRT-PCR). A significantly increased risk of PTC was observed in the miR-34b/c rs4938723 CT, CC, and CT/CC genotypes compared with the TT genotype (CT vs TT: adjusted odds ratio [OR] = 1.51, 95%confidence interval [CI] = 1.23–1.85; CC vs TT: adjusted OR = 1.89, 95%CI = 1.39–2.63; CT/CC vs TT: adjusted OR = 1.59, 95%CI = 1.30–1.92, respectively). Significantly increased PTC susceptibility was also associated with the TP-53 Arg72Pro CC and CG/CC genotypes compared with the GG genotype (CC vs GG: adjusted OR = 2.04, 95%CI = 1.54–2.70; CG/CC vs GG: adjusted OR = 1.35, 95%CI = 1.11–1.67, respectively). Stratification analysis revealed that patients carrying the TP-53 Arg72Pro C allele and CC genotype had a significantly increased risk for developing N1 (C vs. G: OR = 1.27, 95%CI = 1.03–1.56; CC vs. GG: OR = 1.62, 95%CI = 1.07–2.46, respectively). Combined analysis showed that the genotypes of rs4938723 CT/CC + TP-53CG/CC increased the risk of PTC compared with rs4938723TT + TP-53GG (OR = 2.25, 95%CI = 1.67–3.03). Additionally, level of miR-34b was significantly upregulated in PTC patients. These findings indicate that the miR-34b/c rs4938723 and TP-53 Arg72Pro polymorphisms may contribute to the

  18. Sun-induced Chlorophyll fluorescence and PRI improve remote sensing GPP estimates under varying nutrient availability in a typical Mediterranean savanna ecosystem

    NASA Astrophysics Data System (ADS)

    Perez-Priego, O.; Guan, J.; Rossini, M.; Fava, F.; Wutzler, T.; Moreno, G.; Carvalhais, N.; Carrara, A.; Kolle, O.; Julitta, T.; Schrumpf, M.; Reichstein, M.; Migliavacca, M.

    2015-07-01

    This study investigates the performances of different optical indices to estimate gross primary production (GPP) of herbaceous stratum in a Mediterranean savanna with different Nitrogen (N) and Phosphorous (P) availability. Sun-induced chlorophyll Fluorescence yield computed at 760 nm (Fy760), scaled-photochemical reflectance index (sPRI), MERIS terrestrial-chlorophyll index (MTCI) and Normalized difference vegetation index (NDVI) were computed from near-surface field spectroscopy measurements collected using high spectral resolution spectrometers covering the visible near-infrared regions. GPP was measured using canopy-chambers on the same locations sampled by the spectrometers. We hypothesized that light-use efficiency (LUE) models driven by remote sensing quantities (RSM) can better track changes in GPP caused by nutrient supplies compared to those driven exclusively by meteorological data (MM). Particularly, we compared the performances of different RSM formulations - relying on the use of Fy760 or sPRI as proxy for LUE and NDVI or MTCI as fraction of absorbed photosynthetically active radiation (fAPAR) - with those of classical MM. Results showed significantly higher GPP in the N fertilized experimental plots during the growing period. These differences in GPP disappeared in the drying period when senescence effects masked out potential differences due to plant N content. Consequently, although MTCI was tightly related to plant N content (r2 = 0.86, p < 0.01), it was poorly related to GPP (r2 = 0.45, p < 0.05). On the contrary sPRI and Fy760 correlated well with GPP during the whole measurement period. Results revealed that the relationship between GPP and Fy760 is not unique across treatments but it is affected by N availability. Results from a cross validation analysis showed that MM (AICcv = 127, MEcv = 0.879) outperformed RSM (AICcv = 140, MEcv = 0.8737) when soil moisture was used to constrain the seasonal dynamic of LUE. However, residual analyses

  19. Base-pair opening dynamics of the microRNA precursor pri-miR156a affect temperature-responsive flowering in Arabidopsis.

    PubMed

    Kim, Hee-Eun; Kim, Wanhui; Lee, Ae-Ree; Jin, Suhyun; Jun, A Rim; Kim, Nak-Kyoon; Lee, Joon-Hwa; Ahn, Ji Hoon

    2017-03-18

    Internal and environmental cues, including ambient temperature changes, regulate the timing of flowering in plants. Arabidopsis miR156 represses flowering and plays an important role in the regulation of temperature-responsive flowering. However, the molecular basis of miR156 processing at lower temperatures remains largely unknown. Here, we performed nuclear magnetic resonance studies to investigate the base-pair opening dynamics of model RNAs at 16 °C and investigated the in vivo effects of the mutant RNAs on temperature-responsive flowering. The A9C and A10CG mutations in the B5 bulge of the lower stem of pri-miR156a stabilized the C15∙G98 and U16∙A97 base-pairs at the cleavage site of pri-miR156a at 16 °C. Consistent with this, production of mature miR156 was severely affected in plants overexpressing the A9C and A10CG constructs and these plants exhibited almost no delay in flowering at 16 °C. The A10G and A9AC mutations did not strongly affect C15∙G98 and U16∙A97 base-pairs at 16 °C, and plants overexpressing A10G and A9AC mutants of miR156 produced more mature miR156 than plants overexpressing the A9C and A10CG mutants and showed a strong delay in flowering at 16 °C. Interestingly, the A9AC mutation had distinct effects on the opening dynamics of the C15∙G98 and U16∙A97 base-pairs between 16 °C and 23 °C, and plants expressing the A9AC mutant miR156 showed only a moderate delay in flowering at 16 °C. Based on these results, we propose that fine-tuning of the base-pair stability at the cleavage site is essential for efficient processing of pri-miR156a at a low temperature and for reduced flowering sensitivity to ambient temperature changes.

  20. Conductivity anisotropy in Y1-yPryBa2Cu3O7-δ single crystals in a wide range of praseodymium concentrations

    NASA Astrophysics Data System (ADS)

    Vovk, Ruslan V.; Khadzhai, Georgij Ya.; Dobrovolskiy, Oleksandr V.

    2014-12-01

    Anisotropies of different conductivity mechanisms in Y1-yPryBa2Cu3O7-δ single crystals in a wide range of praseodymium concentrations are reported, assuming a transition from the metallic conductivity to the semiconductor-like regime, in conjunction with the fluctuation conductivity within the 3D Aslamazov-Larkin model. The Tc anisotropy grows with increasing y, with a most drastic rise when approaching the non-superconducting composition. As the praseodymium concentration increases, the ideal resistance anisotropy passes through a maximum at y ≈ 0.19. The temperature dependence of the semiconductor-like resistance anisotropy exhibits a maximum associated with variable-range jumps along the c-axis. The temperature dependence of the fluctuation conductivity anisotropy passes through a maximum due to a significant anisotropy of the coherence length.

  1. A novel marsupial pri-miRNA transcript has a putative role in gamete maintenance and defines a vertebrate miRNA cluster paralogous to the miR-15a/miR-16-1 cluster.

    PubMed

    Au, Phil Chi Khang; Frankenberg, Stephen; Selwood, Lynne; Familari, Mary

    2011-10-01

    Successful maintenance, survival and maturation of gametes rely on bidirectional communication between the gamete and its supporting cells. Before puberty, factors from the gamete and its supporting cells are necessary for spermatogonial stem cell and primordial follicle oocyte maintenance. Following gametogenesis, gametes rely on factors and nutrients secreted by cells of the reproductive tracts, the epididymis and/or oviduct, to complete maturation. Despite extensive studies on female and male reproduction, many of the molecular mechanisms of germ cell maintenance remain relatively unknown, particularly in marsupial species. We present the first study and characterisation of a novel primary miRNA transcript, pri-miR-16c, in the marsupial, the stripe-faced dunnart. Bioinformatic analysis showed that its predicted processed miRNA - miR-16c - is present in a wide range of vertebrates, but not eutherians. In situ hybridisation revealed dunnart pri-miR-16c expression in day 4 (primordial germ cells) and day 7 (oogonia) pouch young, in primary oocytes and follicle cells of primordial follicles but then only in follicle cells of primary, secondary and antral follicles in adult ovaries. In the adult testis, pri-miR-16c transcripts were present in the cytoplasm of spermatogonial cells. The oviduct and the epididymis both showed expression, but not any other somatic tissues examined or conceptuses during early embryonic development. This pattern of expression suggests that pri-miR-16c function may be associated with gamete maintenance, possibly through mechanisms involving RNA transfer, until the zygote enters the uterus at the pronuclear stage.

  2. The N-Terminal Domain of the E. coli PriA Helicase Contains Both the DNA- and the Nucleotide-Binding Sites. Energetics of Domain-DNA Interactions and Allosteric Effect of the Nucleotide Cofactors§

    PubMed Central

    Szymanski, Michal R.; Bujalowski, Paul J.; Jezewska, Maria J.; Gmyrek, Aleksandra M.; Bujalowski, Wlodzimierz

    2011-01-01

    Functional interactions of the E. coli PriA helicase 181N-terminal domain with the DNA and nucleotide cofactors have been quantitatively examined. The isolated 181N-terminal domain forms a stable dimer in solution, most probably reflecting the involvement of the domain in specific cooperative interactions of the intact PriA protein - dsDNA complex. Only one monomer of the domain dimer binds the DNA, i.e., the dimer has one effective DNA-binding site. Although the total site-size of the dimer - ssDNA complex is ~13 nucleotides, the DNA-binding subsite engages in direct interactions ~5 nucleotides. A small number of interacting nucleotides indicates that the DNA-binding subsites of the PriA helicase, i.e., the strong subsite on the helicase domain and the weak subsite on the N-terminal domain, are spatially separated in the intact enzyme. Contrary to current views, the subsite has only a slight preference for the 3′-end OH group of the ssDNA and lacks any significant base specificity, although it has a significant dsDNA affinity. Unlike the intact helicase, the DNA-binding subsite of the isolated domain is in an open conformation, indicating the presence of the direct helicase domain - N-terminal domain interactions. The discovery that the 181N-terminal domain possesses a nucleotide-binding site places the allosteric, weak nucleotide-binding site of the intact PriA on the N-terminal domain. The specific ADP effect on the domain DNA-binding subsite indicates that in the intact helicase, the bound ADP not only opens the DNA-binding subsite but also increases its intrinsic DNA affinity. PMID:21888358

  3. Optimization of growth conditions for (La1-yPry)1-x CaxMnO3 thin films on annealed oxide substrates

    NASA Astrophysics Data System (ADS)

    Schaefer, Brian; Grant, Daniel; Biswas, Amlan

    2014-03-01

    Consistent growth of flat, epitaxial thin films is essential for uncovering the unique transport characteristics of rare-earth manganite systems. We have developed pulsed laser deposition growth conditions for (La1-yPry)1-x CaxMnO3 (LPCMO, y = 0.4, 0.5, 0.6) thin films on annealed NdGaO3 (NGO) and SrTiO3 (STO) substrates. The extra annealing step for NGO and STO produces atomically flat substrates with well-defined terraces of unit cell step height. Films grown on these annealed substrates demonstrate better lattice matching compared to films grown on as-received substrates. Consequently, annealing substrates before film growth leads to higher quality thin films with a more controllable thickness. We demonstrate that these optimized growth parameters yield LPCMO thin films that are also atomically flat, as confirmed by atomic force microscopy. We are using these thin films to restrict phase growth to reduced dimensions and to study the origin of thermodynamic phase competition due to first order transitions in manganites. NSF DMR-0804452

  4. A Simple and High-Throughput Analysis of Amatoxins and Phallotoxins in Human Plasma, Serum and Urine Using UPLC-MS/MS Combined with PRiME HLB μElution Platform

    PubMed Central

    Zhang, Shuo; Zhao, Yunfeng; Li, Haijiao; Zhou, Shuang; Chen, Dawei; Zhang, Yizhe; Yao, Qunmei; Sun, Chengye

    2016-01-01

    Amatoxins and phallotoxins are toxic cyclopeptides found in the genus Amanita and are among the predominant causes of fatal food poisoning in China. In the treatment of Amanita mushroom poisoning, an early and definite diagnosis is necessary for a successful outcome, which has prompted the development of protocols for the fast and confirmatory determination of amatoxins and phallotoxins in human biological fluids. For this purpose, a simple, rapid and sensitive multiresidue UPLC-MS/MS method for the simultaneous determination of α-amanitin, β-amanitin, γ-amanitin, phalloidin (PHD) and phallacidin (PCD) in human plasma, serum and urine was developed and validated. The diluted plasma, serum and urine samples were directly purified with a novel PRiME technique on a 96-well μElution plate platform, which allowed high-throughput sample processing and low reagent consumption. After purification, a UPLC-MS/MS analysis was performed using positive electrospray ionization (ESI+) in multiple reaction monitoring (MRM) mode. This method fulfilled the requirements of a validation test, with good results for the limit of detection (LOD), lower limit of quantification (LLOQ), accuracy, intra- and inter-assay precision, recovery and matrix effects. All of the analytes were confirmed and quantified in authentic plasma, serum and urine samples obtained from cases of poisoning using this method. Using the PRiME μElution technique for quantification reduces labor and time costs and represents a suitable method for routine toxicological and clinical emergency analysis. PMID:27153089

  5. A Simple and High-Throughput Analysis of Amatoxins and Phallotoxins in Human Plasma, Serum and Urine Using UPLC-MS/MS Combined with PRiME HLB μElution Platform.

    PubMed

    Zhang, Shuo; Zhao, Yunfeng; Li, Haijiao; Zhou, Shuang; Chen, Dawei; Zhang, Yizhe; Yao, Qunmei; Sun, Chengye

    2016-05-04

    Amatoxins and phallotoxins are toxic cyclopeptides found in the genus Amanita and are among the predominant causes of fatal food poisoning in China. In the treatment of Amanita mushroom poisoning, an early and definite diagnosis is necessary for a successful outcome, which has prompted the development of protocols for the fast and confirmatory determination of amatoxins and phallotoxins in human biological fluids. For this purpose, a simple, rapid and sensitive multiresidue UPLC-MS/MS method for the simultaneous determination of α-amanitin, β-amanitin, γ-amanitin, phalloidin (PHD) and phallacidin (PCD) in human plasma, serum and urine was developed and validated. The diluted plasma, serum and urine samples were directly purified with a novel PRiME technique on a 96-well μElution plate platform, which allowed high-throughput sample processing and low reagent consumption. After purification, a UPLC-MS/MS analysis was performed using positive electrospray ionization (ESI+) in multiple reaction monitoring (MRM) mode. This method fulfilled the requirements of a validation test, with good results for the limit of detection (LOD), lower limit of quantification (LLOQ), accuracy, intra- and inter-assay precision, recovery and matrix effects. All of the analytes were confirmed and quantified in authentic plasma, serum and urine samples obtained from cases of poisoning using this method. Using the PRiME μElution technique for quantification reduces labor and time costs and represents a suitable method for routine toxicological and clinical emergency analysis.

  6. Preliminary evidence for association of genetic variants in pri-miR-34b/c and abnormal miR-34c expression with attention deficit and hyperactivity disorder

    PubMed Central

    Garcia-Martínez, I; Sánchez-Mora, C; Pagerols, M; Richarte, V; Corrales, M; Fadeuilhe, C; Cormand, B; Casas, M; Ramos-Quiroga, J A; Ribasés, M

    2016-01-01

    Attention deficit and hyperactivity disorder (ADHD) is a prevalent neurodevelopmental disorder characterized by impairment to sustain attention and inability to control impulses and activity level. The etiology of ADHD is complex, with an estimated heritability of 70–80%. Under the hypothesis that alterations in the processing or target binding of microRNAs (miRNAs) may result in functional alterations predisposing to ADHD, we explored whether common polymorphisms potentially affecting miRNA-mediated regulation are involved in this psychiatric disorder. We performed a comprehensive association study focused on 134 miRNAs in 754 ADHD subjects and 766 controls and found association between the miR-34b/c locus and ADHD. Subsequently, we provided preliminary evidence for overexpression of the miR-34c-3p mature form in peripheral blood mononuclear cells of ADHD subjects. Next, we tested the effect on gene expression of single-nucleotide polymorphisms within the ADHD-associated region and found that rs4938923 in the promoter of the pri-miR-34b/c tags cis expression quantitative trait loci for both miR-34b and miR-34c and has an impact on the expression levels of 681 transcripts in trans, including genes previously associated with ADHD. This gene set was enriched for miR-34b/c binding sites, functional categories related to the central nervous system, such as axon guidance or neuron differentiation, and serotonin biosynthesis and signaling canonical pathways. Our results provide preliminary evidence for the contribution to ADHD of a functional variant in the pri-miR-34b/c promoter, possibly through dysregulation of the expression of mature forms of miR-34b and miR-34c and some target genes. These data highlight the importance of abnormal miRNA function as a potential epigenetic mechanism contributing to ADHD. PMID:27576168

  7. Substrate-dependent post-annealing effects on the strain state and electrical transport of epitaxial La5/8-yPryCa3/8MnO3 films

    NASA Astrophysics Data System (ADS)

    Hu, Sixia; Huang, Haoliang; Yang, Yuanjun; Luo, Zhenlin; Yang, Mengmeng; Wang, Haibo; Dong, Yongqi; Hong, Bing; He, Hao; Bao, Jun; Gao, Chen

    2014-06-01

    Large scale electronic phase separation (EPS) between ferromagnetic metallic and charge-ordered insulating phases in La5/8-yPryCa3/8MnO3 (y = 0.3) (LPCMO) is very sensitive to the structural changes. This work investigates the effects of post-annealing on the strain states and electrical transport properties of LPCMO films epitaxially grown on (001)pc SrTiO3 (tensile strain), LaAlO3 (compressive strain) and NdGaO3 (near-zero strain) substrates. Before annealing, all the films are coherent-epitaxial and insulating through the measured temperature range. Obvious change of film lattice is observed during the post-annealing: the in-plane strain in LPCMO/LAO varies from -1.5% to -0.1% while that in LPCMO/STO changes from 1.6% to 1.3%, and the lattice of LPCMO/NGO keeps constant because of the good lattice-match between LPCMO and NGO. Consequently, the varied film strain leads to the emergence of metal-insulator transitions (MIT) and shift of the critical transition temperature in the electrical transport. These results demonstrate that lattice-mismatch combined with post-annealing is an effective approach to tune strain in epitaxial LPCMO films, and thus to control the EPS and MIT in the films.

  8. Are the SSB-Interacting Proteins RecO, RecG, PriA and the DnaB-Interacting Protein Rep Bound to Progressing Replication Forks in Escherichia coli?

    PubMed Central

    Matelot, Mélody; Allemand, Jean-François; Michel, Bénédicte

    2015-01-01

    In all organisms several enzymes that are needed upon replication impediment are targeted to replication forks by interaction with a replication protein. In most cases these proteins interact with the polymerase clamp or with single-stranded DNA binding proteins (SSB). In Escherichia coli an accessory replicative helicase was also shown to interact with the DnaB replicative helicase. Here we have used cytological observation of Venus fluorescent fusion proteins expressed from their endogenous loci in live E. coli cells to determine whether DNA repair and replication restart proteins that interact with a replication protein travel with replication forks. A custom-made microscope that detects active replisome molecules provided that they are present in at least three copies was used. Neither the recombination proteins RecO and RecG, nor the replication accessory helicase Rep are detected specifically in replicating cells in our assay, indicating that either they are not present at progressing replication forks or they are present in less than three copies. The Venus-PriA fusion protein formed foci even in the absence of replication forks, which prevented us from reaching a conclusion. PMID:26244508

  9. Impact of nanostructuring on the magnetic and magnetocaloric properties of microscale phase-separated La5/8–yPryCa3/8MnO₃ manganites

    DOE PAGES

    Bingham, N. S.; Lampen, P.; Phan, M. H.; ...

    2012-08-16

    Bulk manganites of the form La5/8–yPryCa3/8MnO₃ (LPCMO) exhibit a complex phase diagram due to coexisting charge-ordered antiferromagnetic (CO/AFM), charge-disordered paramagnetic (PM), and ferromagnetic (FM) phases. Because phase separation in LPCMO occurs on the microscale, reducing particle size to below this characteristic length is expected to have a strong impact on the magnetic properties of the system. Through a comparative study of the magnetic and magnetocaloric properties of single-crystalline (bulk) and nanocrystalline LPCMO (y=3/8) we show that the AFM, CO, and FM transitions seen in the single crystal can also be observed in the large particle sizes (400 and 150 nm),more » while only a single PM to FM transition is found for the small particles (55 nm). Magnetic and magnetocaloric measurements reveal that decreasing particle size affects the balance of competing phases in LPCMO and narrows the range of fields over which PM, FM, and CO phases coexist. The FM volume fraction increases with size reduction, until CO is suppressed below some critical size, ~100 nm. With size reduction, the saturation magnetization and field sensitivity first increase as long-range CO is inhibited, then decrease as surface effects become increasingly important. The trend that the FM phase is stabilized on the nanoscale is contrasted with the stabilization of the charge-disordered PM phase occurring on the microscale, demonstrating that in terms of the characteristic phase separation length, a few microns and several hundred nanometers represent very different regimes in LPCMO.« less

  10. Multiple magnetic transitions, dynamical magnetic liquid and magnetic glass in La1-x-yPryCaxMnO3 (x≈0.42, y≈0.40) thin films: A thickness dependent study

    NASA Astrophysics Data System (ADS)

    Agarwal, Vasudha; Kandpal, Lalit M.; Siwach, P. K.; Awana, V. P. S.; Singh, H. K.

    2015-11-01

    The influence of substrate induced strain and its relaxation on the evolution of the multiple magnetic transitions and ensuing modifications in the degree of phase separation, the nature of the dynamical magnetic liquid, the randomly frozen glass and insulator-metal transitions have been investigated in single crystalline La1-x-yPryCaxMnO3 (x≈0.42, y≈0.40) in t~20-140 nm thick films deposited on LaAlO3 (001) substrates. The ferromagnetic (FM) transition temperature (TC) first decreases as the film thickness is increased from t~20 nm to t~60 nm and then increases with increasing film thickness. In contrast the charge ordering (CO), antiferromagnetic (AFM) and glass transition temperatures shift towards higher values with increasing film thickness. The field cooled cooling (FCC) and field cooled warming (FCW) magnetization (M-T) of films having t≥60 nm shows pronounced hysteresis and ΔTC=TCFCW-TCFCC decreases concomitantly from 46 K to 35 K as the thickness increases from ~60 to ~140 nm. The thinnest film shows insulator to metal transitions (IMT) only at magnetic field H>40 kOe. Films with t≥TC show sharp hysteretic IMT, with ΔTIM=TIMW-TIMC decreasing from ~70 K to ~50 K as the thickness increases from ~60 nm to ~140 nm. Such strong hysteresis is a characteristic of first order phase transition and also a signature of magnetic liquid like phase created by the magnetic frustration created by the delicate balance between FM and AFM/CO phases. The H induced AFM/CO to FM transition reduces ΔTIM and at higher fields the phase transition appears akin to the second order. The observed difference in the magnetic and transport properties have been explained in terms of the substrate induced strain at lower film thickness and its relaxation at higher thickness.

  11. Pendant alkyl and aryl groups on tin control complex geometry and reactivity with H2/D2 in Pt(SnR3)2(CNBu(t))2 (R = Bu(t), Pr(i), Ph, mesityl).

    PubMed

    Koppaka, Anjaneyulu; Zhu, Lei; Yempally, Veeranna; Isrow, Derek; Pellechia, Perry J; Captain, Burjor

    2015-01-14

    The complex Pt(SnBu(t)3)2(CNBu(t))2(H)2, 1, was obtained from the reaction of Pt(COD)2 and Bu(t)3SnH, followed by addition of CNBu(t). The two hydride ligands in 1 can be eliminated, both in solution and in the solid state, to yield Pt(SnBu(t)3)2(CNBu(t))2, 2. Addition of hydrogen to 2 at room temperature in solution and in the solid state regenerates 1. Complex 2 catalyzes H2-D2 exchange in solution to give HD. The proposed mechanism of exchange involves reductive elimination of Bu(t)3SnH from 1 to afford vacant sites on the Pt center, thus facilitating the exchange process. This is supported by isolation and characterization of Pt(SnMes3)(SnBu(t)3)(CNBu(t))2, 3, when the addition of H2 to 2 was carried out in the presence of free ligand Mes3SnH (Mes = 2,4,6-Me3C6H2). Complex Pt(SnMes3)2(CNBu(t))2, 5, can be prepared from the reaction of Pt(COD)2 with Mes3SnH and CNBu(t). The exchange reaction of 2 with Ph3SnH gave Pt(SnPh3)3(CNBu(t))2(H), 6, wherein both SnBu(t)3 ligands are replaced by SnPh3. Complex 6 decomposes in air to form square planar Pt(SnPh3)2(CNBu(t))2, 7. The complex Pt(SnPr(i)3)2(CNBu(t))2, 8, was also prepared. Out of the four analogous complexes Pt(SnR3)2(CNBu(t))2 (R = Bu(t), Mes, Ph, or Pr(i)), only the Bu(t) analogue does both H2 activation and H2-D2 exchange. This is due to steric effects imparted by the bulky Bu(t) groups that distort the geometry of the complex considerably from planarity. The reaction of Pt(COD)2 with Bu(t)3SnH and CO gas afforded trans-Pt(SnBu(t)3)2(CO)2, 9. Compound 9 can be converted to 2 by replacement of the CO ligands with CNBu(t) via the intermediate Pt(SnBu(t)3)2(CNBu(t))2(CO), 10.

  12. PRI and the Beyond Merida Initiative

    DTIC Science & Technology

    2011-10-28

    candidate, Andres Manuel Lopez , called for the de- militarization of our bilateral agenda while speaking to a U.S. think tank.9 Santiago Creel Miranda, a... manuel -l%C3%B3pez- obrador (accessed October 16, 2011) 10 Elimparcial. “Anti-narco fight will change if president: Creel,” http...Wilson Institute for Scholars: Mexico Institute. http://www.wilsoncenter.org/event/dialogues-mexicodi%C3%A1logos-con-m%C3%A9xico- featuring- andr %C3%A9s

  13. The Politics of Parental Involvement: How Opportunity Hoarding and Prying Shape Educational Opportunity

    ERIC Educational Resources Information Center

    Lyken-Segosebe, Dawn; Hinz, Serena E.

    2015-01-01

    As more state legislatures join the debate on school-choice and parent-trigger legislation, their discussions draw attention to an evolving landscape outside school walls where parental action shapes educational opportunity. Parents wield their political, social, economic, and cultural capital to secure the best educational outcomes for their…

  14. Coherent Processing Across Multiple Staggered Pulse Repetition Interval (PRI) Dwells in Radar

    DTIC Science & Technology

    2004-02-01

    method”, Anal. Chem., Vol. 63, pp. 534-536, 1991. [25] P. P. Vaidyanathan, Multirate Systems and Filter Banks , 1993, Prentice-Hall, Englewood Cliffs...an unevenly sampled signal using multirate filter banks , a multi-resolution approach has been taken by Vaidyanathan [25, 26 and 27]. It is possible...NJ. [26] P. P. Vaidyanathan, and V. C. Liu, “Classical sampling theorems in the context of multirate and polyphase digital filter bank structure

  15. Sensor4PRI: a sensor platform for the protection of railway infrastructures.

    PubMed

    Cañete, Eduardo; Chen, Jaime; Díaz, Manuel; Llopis, Luis; Rubio, Bartolomé

    2015-02-27

    Wireless Sensor Networks constitute pervasive and distributed computing systems and are potentially one of the most important technologies of this century. They have been specifically identified as a good candidate to become an integral part of the protection of critical infrastructures. In this paper we focus on railway infrastructure protection and we present the details of a sensor platform designed to be integrated into a slab track system in order to carry out both installation and maintenance monitoring activities. In the installation phase, the platform helps operators to install the slab tracks in the right position. In the maintenance phase, the platform collects information about the structural health and behavior of the infrastructure when a train travels along it and relays the readings to a base station. The base station uses trains as data mules to upload the information to the internet. The use of a train as a data mule is especially suitable for collecting information from remote or inaccessible places which do not have a direct connection to the internet and require less network infrastructure. The overall aim of the system is to deploy a permanent economically viable monitoring system to improve the safety of railway infrastructures.

  16. Introns of plant pri-miRNAs enhance miRNA biogenesis

    PubMed Central

    Bielewicz, Dawid; Kalak, Malgorzata; Kalyna, Maria; Windels, David; Barta, Andrea; Vazquez, Franck; Szweykowska-Kulinska, Zofia; Jarmolowski, Artur

    2013-01-01

    Plant MIR genes are independent transcription units that encode long primary miRNA precursors, which usually contain introns. For two miRNA genes, MIR163 and MIR161, we show that introns are crucial for the accumulation of proper levels of mature miRNA. Removal of the intron in both cases led to a drop-off in the level of mature miRNAs. We demonstrate that the stimulating effects of the intron mostly reside in the 5′ss rather than on a genuine splicing event. Our findings are biologically significant as the presence of functional splice sites in the MIR163 gene appears mandatory for pathogen-triggered accumulation of miR163 and proper regulation of at least one of its targets. PMID:23681439

  17. Autonomic Disorders in Cervical Migraine (O Vegetativnykh Narusheniyakh pri Sheinoi Migreni),

    DTIC Science & Technology

    In cervical migraine the main symptoms are persistent headaches, frequently of the hemicrania type. The pains start in the cerico-occipital region...head: they increase with the slightest movement, and decrease at rest. Some time after the start of the sickness, cervical radicular symptoms are...added which attract the examiner’s attention to the cervical segment of the spine. In recent years, many studies proved that an entire series of cardio

  18. Importance of the Radicular Syndrome in Cervical Migraine (O Znachenii Radikulyarnogo Sindroma pri Sheinoi Migreni),

    DTIC Science & Technology

    The direct causes of cerebral disorders in cervical migraine are compression of the vertebral artery and irritation of the vertebral nerve by... cervical osteophytes, deformed uncinate processes, as well as the pathological afferentation which occurs here. One hundred ten patients suffering from... cervical migraine were observed. The most characteristic symptoms are constant dull, frequently unilateral headaches with typical irradiation from the

  19. Characteristic Headaches with Cervical Migraine (O Kharakteristike Golovnoi Boli pri Sheinoi Migreni),

    DTIC Science & Technology

    Headache is the leading symptom of cervical migraine. The localization and irradiation of pains, the characteristic gesture of the patients, the...characteristics of cervical migraine. It must be assumed that knowledge through further studies of the clinical aspects and diagnosis of this...widespread disease will eventually reach all practicing physicians, and that in time ’ cervical migraine’ will become a common diagnosis at any polyclinic. (Author)

  20. School Internal Investigations of Employees, Open Records Laws, and the Prying Press.

    ERIC Educational Resources Information Center

    Remington, Lee R.

    2002-01-01

    Discusses history and purpose of state open-records laws. Surveys how parties make open-records requests, various causes of action, and sanctions for noncompliance. Examines how open-records requests related to district investigations can implicate the Family Education Rights and Privacy Act. Attempts to find appropriate balance between public's…

  1. Directional hyperspectral observations to detect plant stress with the PRI and SIF in a cornfield

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We examined the impact of drought stress and temperature on plant hyperspectral, fluorescence, and photosynthetic responses during the 2012 growing season at an experimental USDA (United States Department of Agriculture) cornfield in Beltsville, MD USA. The manipulations included 4 nitrogen (N) appl...

  2. Prying the Gates Wide Open: Academic Freedom and Gender Equality at Brown University, 1974-1977

    ERIC Educational Resources Information Center

    Porwancher, Andrew

    2013-01-01

    In 1974, Brown University's Department of Anthropology denied tenure to assistant professor Louise Lamphere. Convinced that her dismissal was the product of sex discrimination, Lamphere filed suit against Brown. Lamphere and three other female scholars who joined her suit successfully pressed Brown into an out-of-court settlement in 1977.…

  3. Sensor4PRI: A Sensor Platform for the Protection of Railway Infrastructures

    PubMed Central

    Cañete, Eduardo; Chen, Jaime; Díaz, Manuel; Llopis, Luis; Rubio, Bartolomé

    2015-01-01

    Wireless Sensor Networks constitute pervasive and distributed computing systems and are potentially one of the most important technologies of this century. They have been specifically identified as a good candidate to become an integral part of the protection of critical infrastructures. In this paper we focus on railway infrastructure protection and we present the details of a sensor platform designed to be integrated into a slab track system in order to carry out both installation and maintenance monitoring activities. In the installation phase, the platform helps operators to install the slab tracks in the right position. In the maintenance phase, the platform collects information about the structural health and behavior of the infrastructure when a train travels along it and relays the readings to a base station. The base station uses trains as data mules to upload the information to the internet. The use of a train as a data mule is especially suitable for collecting information from remote or inaccessible places which do not have a direct connection to the internet and require less network infrastructure. The overall aim of the system is to deploy a permanent economically viable monitoring system to improve the safety of railway infrastructures. PMID:25734648

  4. Miniature Electron Sources for Tomorrow’s Vacuum THz Devices (MiPRI)

    DTIC Science & Technology

    2006-07-01

    slotted slow-wave structure show that the circuit could be With H = 2mm, the ohmic Q- factor , depending on the choice driven at 3-4 times the starting...least a factor of 2, which results (SWS) within an open resonator [I). However, typical in the range of nominal current densities of about 130 A/cm 2...length, P3o is the velocity of the electrons normalized to the speed of light, c, Vb is the beam voltage and Qohm is the ohmic quality factor . It

  5. Fearing Prying U.S. Eyes, Canada's Colleges Crack Down On Computing

    ERIC Educational Resources Information Center

    Carnevale, Dan

    2007-01-01

    The USA Patriot Act is having far-reaching effects on the kinds of data that wind up on some academics' computers in Canada. Canadian colleges, responding to provincial laws passed in reaction to the Patriot Act, are preventing professors from entering the United States with students' private data on their laptops and limiting the locations of…

  6. 7 CFR 14.6 - Criteria for determining the pri- mary purpose of payments with respect to potential exclusion...

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... the productive capacity of the resource regardless of the level of technology available or applied... the productive capacity of the soil are forms of soil deterioration. (b) Water conservation. (1) Water... this section. (c) Protecting the environment. (1) Payments shall be considered to be made primarily...

  7. 7 CFR 14.6 - Criteria for determining the pri- mary purpose of payments with respect to potential exclusion...

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... the productive capacity of the resource regardless of the level of technology available or applied.... (3) Habitat includes, but is not limited to, the food supply, water supply, and nesting and escape... habitat are domestic crops raised for the primary purpose of providing food supply or cover for...

  8. Diurnal Patterns of Photosynthesis, Chlorophyll Fluorescence, and PRI to Evaluate Water Stress in the Invasive Species, Elaeagnus umbellata Thunb

    DTIC Science & Technology

    2010-01-01

    Phytol 165:463–472 Morales F, Abadı́a A, Abadı́a J, Montserrat G, Gil-Pelegrı́n E (2002) Trichomes and photosynthetic pigment composition changes...photoprotective mechanism at work for Elaeagnus species under water stress. Elaeagnus umbellata maintains photosynthetic carbon assimilation even...radiation while maximizing photosynthetic carbon gain. These characteristics may contribute to the invasive success of E. umbellata. REPORT DOCUMENTATION

  9. A Multimethod Assessment of Juvenile Psychopathy: Comparing the Predictive Utility of the PCL:YV, YPI, and NEO PRI

    ERIC Educational Resources Information Center

    Cauffman, Elizabeth; Kimonis, Eva R.; Dmitrieva, Julia; Monahan, Kathryn C.

    2009-01-01

    The current study compares 3 distinct approaches for measuring juvenile psychopathy and their utility for predicting short- and long-term recidivism among a sample of 1,170 serious male juvenile offenders. The assessment approaches compared a clinical interview method (the Psychopathy Checklist: Youth Version [PCL:YV]; Forth, Kosson, & Hare,…

  10. A Multimethod Assessment of Juvenile Psychopathy: Comparing the Predictive Utility of the PCL:YV, YPI, and NEO PRI

    PubMed Central

    Cauffman, Elizabeth; Kimonis, Eva R.; Dmitrieva, Julia; Monahan, Kathryn C.

    2009-01-01

    The current study compares 3 distinct approaches for measuring juvenile psychopathy and their utility for predicting short- and long-term recidivism among a sample of 1,170 serious male juvenile offenders. The assessment approaches compared a clinical interview method (the Psychopathy Checklist: Youth Version [PCL:YV]; Forth, Kosson, & Hare, 2003), a new self-report measure (the Youth Psychopathic Traits Inventory; Andershed, Kerr, Stattin, & Levander, 2002), and a personality-based approach (the NEO Psychopathy Resemblance Index; Lynam & Widiger, 2007). Results indicate a modest overlap between the 3 measures (rs = .26–.36); however, youths were often identified as psychopathic by 1 measure but not by others. Measures were weakly correlated with reoffending during subsequent 6- and 12-month periods. Findings suggest that although such scores may be useful indicators of the need for heightened monitoring in the short term, care should be taken when making predictions about long-term recidivism among adolescents. Moreover, the lack of long-term predictive power for the PCL:YV and the inconsistent psychopathy designations obtained with different measures raise serious questions about the use of such measures as the basis for legal or clinical treatment decisions. PMID:19947787

  11. Pressure induced structural phase transition of PrX, PrY (X = S, Se, Te) chalcogenides and (Y = N, P, As) pnictides

    NASA Astrophysics Data System (ADS)

    Varshney, Dinesh; Shriya, Swarna; Dube, A.; Varshney, Meenu

    2012-06-01

    Pressure induced structural aspects of NaCl-type (B1) to CsCl-type (B2) structure in Praseodymium pnictides and chalcogenides are presented. An effective interionic interaction potential with long range Coulomb, van der Waals interaction and the short-range repulsive interaction upto second-neighbor ions within the Hafemeister and Flygare approach with modified ionic charge is developed. Deduced results on volume discontinuity in pressure volume phase diagram identify the structural phase transition from B1 to B2 structure consistent with the known results.

  12. Association of Polymorphisms in three pri-miRNAs that Target Pepsinogen C with the Risk and Prognosis of Gastric Cancer

    PubMed Central

    Wu, Ye-feng; Xu, Qian; He, Cai-yun; Li, Ying; Liu, Jing-wei; Deng, Na; Sun, Li-ping; Yuan, Yuan

    2017-01-01

    We aimed to explore the associations of polymorphisms in three microRNAs (miRNAs) (let-7e rs8111742, miR-365b rs121224 and miR-4795 rs1002765) that target PGC with the risk and prognosis of gastric cancer/atrophic gastritis. Sequenom’s MassArray was used to genotype the miRNA polymorphisms in 724 gastric cancer cases, 862 atrophic gastritis cases and 862 controls in a Chinese population. We found that let-7e rs8111742 and miR-4795 rs1002765 were associated with the risk of gastric cancer in the H. pylori-positive subgroup. MiR-365b rs121224 was associated with the risk of intestinal-type gastric cancer in the alcohol consumption subgroup. Intestinal-type gastric cancer patients at Borrmann stages III-IV who carry the miR-365b rs121224 GG genotype had better prognosis compared with those who carry the CG or CC genotypes. MiR-365b rs121224 was associated with Lauren typing and TNM staging, in which the distribution of GG genotype carriers in intestinal-type gastric cancer and the TNM stage I-II subgroup was higher than that of CG or CC genotypes, which contrasted with the distribution in diffuse-type gastric cancer or TNM III-IV groups. These findings suggested that the polymorphisms in these miRNAs might be biomarkers for gastric cancer risk and prognosis, especially for populations infected with Helicobacter pylori or who consume alcohol. PMID:28067243

  13. Synthesis and evaluation of geometric analogs of 1α,25-dihydroxyvitamin D2 as potential therapeutics.

    PubMed

    Bolla, Narasimha Rao; Corcoran, Aoife; Yasuda, Kaori; Chodyński, Michał; Krajewski, Krzysztof; Cmoch, Piotr; Marcinkowska, Ewa; Brown, Geoffrey; Sakaki, Toshiyuki; Kutner, Andrzej

    2016-11-01

    An improved convergent strategy was developed for the synthesis of the previously obtained side-chain extended and rigidified analogs of 1α,25-dihydroxyvitamin D2, PRI-1906 and PRI-1907. New (24Z) geometric isomers of the analogs, PRI-1916 and PRI-1917, were also obtained and identified. These side-chain isomers were separable by flash chromatography, as C-25 alcohols, from the synthetic precursors of PRI-1906 and PRI-1907, respectively. The structures of new analogs were determined by advanced techniques of (1)H and (13)C NMR, including COSY, HSQC and HMBC sequences. Binding affinities of the geometric analogs PRI-1906 and PRI-1916 and their respective C-26, C-27 homologs PRI-1907 and PRI-1917 for the full-length human vitamin D receptor were determined by a fluorescence polarization competition assay. The binding affinity of (24Z) methyl analog PRI-1906 was much higher than that of (24E) analog PRI-1906, while the affinity of (24Z) ethyl analog PRI-1917 was lower than that of the respective PRI-1907. Investigation of the metabolism of these compounds by human CYP24A1 revealed they are much more resistant to CYP24A1 than 1α,25-dihydroxyvitamin D2, indicating they could have longer-term biological effects on target tissues.

  14. Electromagnetic Properties of Materials and Metamaterials

    DTIC Science & Technology

    2010-09-20

    39 3.2.2 Pri sm Coup ler...18 Figure 21 :NRI and Tefl on wedge-pri sms fabricated by Boeing for the DARPA...plasmon di spersion for a metal-air interface(dm) and, in the limit where the goes to zero, a metal-pri sm interface(pm) ........ ... ........ 40 Figure

  15. Antiproliferative Activity and in Vivo Toxicity of Double-Point Modified Analogs of 1,25-Dihydroxyergocalciferol

    PubMed Central

    Trynda, Justyna; Turlej, Eliza; Milczarek, Magdalena; Pietraszek, Anita; Chodyński, Michał; Kutner, Andrzej; Wietrzyk, Joanna

    2015-01-01

    Analogs of 1,25-dihydroxyergocalciferol, modified in the side-chain and in the A-ring, were tested for their antiproliferative activity against a series of human cancer cell lines in vitro and in vivo toxicity. The proliferation inhibition caused by the analogs was higher than that of the parent compounds, while the toxicity, measured as the serum calcium level, was lower. All analogs were able to induce, in HL-60 and MV4-11 leukemic cells, G0/G1 cell cycle arrest and differentiation expressed as morphological signs typical for monocytes. The analogs also induced the expression of CD11b and/or CD14 cell-differentiation markers. The most potent analogs, PRI-5105, PRI-5106, PRI-5201 and PRI-5202, were also able to induce vitamin D receptor (VDR) protein expression, mainly in the cytoplasmic fraction of HL-60 or MV4-11 cells. The most active analogs were the 19-nor ones with an extended and rigidified side-chain (PRI-5201 and PRI-5202), as in the former analogs PRI-1906 and PRI-1907. Epimerization at C-24 (PRI-5101) or introduction of an additional hydroxyl at C-23 (PRI-5104) reduced the toxicity of the analog with retained antiproliferative activity. PMID:26492238

  16. Mitigating Corruption in Government Security Forces: The Role of Institutions, Incentives, and Personnel Management in Mexico

    DTIC Science & Technology

    2011-01-01

    Preventive Police PJF Policía Judicial Federal, or Federal Judicial Police PRI Partido Revolucionario Institucional , or Institutional Revolutionary...Partido Revolucionario Institucional , or PRI) emerged as the dominating political force in Mexico in the 20th century. The PRI regime was... tradicional /default.aspx Jacob, Brian A., and Steven D. Levitt, “Rotten Apples: An Investigation of the Prevalence and Predictors of Teacher Cheating

  17. Skip the alignment: degenerate, multiplex primer and probe design using K-mer matching instead of alignments.

    PubMed

    Hysom, David A; Naraghi-Arani, Pejman; Elsheikh, Maher; Carrillo, A Celena; Williams, Peter L; Gardner, Shea N

    2012-01-01

    PriMux is a new software package for selecting multiplex compatible, degenerate primers and probes to detect diverse targets such as viruses. It requires no multiple sequence alignment, instead applying k-mer algorithms, hence it scales well for large target sets and saves user effort from curating sequences into alignable groups. PriMux has the capability to predict degenerate primers as well as probes suitable for TaqMan or other primer/probe triplet assay formats, or simply probes for microarray or other single-oligo assay formats. PriMux employs suffix array methods for efficient calculations on oligos 10-~100 nt in length. TaqMan® primers and probes for each segment of Rift Valley fever virus were designed using PriMux, and lab testing comparing signatures designed using PriMux versus those designed using traditional methods demonstrated equivalent or better sensitivity for the PriMux-designed signatures compared to traditional signatures. In addition, we used PriMux to design TaqMan® primers and probes for unalignable or poorly alignable groups of targets: that is, all segments of Rift Valley fever virus analyzed as a single target set of 198 sequences, or all 2863 Dengue virus genomes for all four serotypes available at the time of our analysis. The PriMux software is available as open source from http://sourceforge.net/projects/PriMux.

  18. Skip the Alignment: Degenerate, Multiplex Primer and Probe Design Using K-mer Matching Instead of Alignments

    PubMed Central

    Hysom, David A.; Naraghi-Arani, Pejman; Elsheikh, Maher; Carrillo, A. Celena; Williams, Peter L.; Gardner, Shea N.

    2012-01-01

    PriMux is a new software package for selecting multiplex compatible, degenerate primers and probes to detect diverse targets such as viruses. It requires no multiple sequence alignment, instead applying k-mer algorithms, hence it scales well for large target sets and saves user effort from curating sequences into alignable groups. PriMux has the capability to predict degenerate primers as well as probes suitable for TaqMan or other primer/probe triplet assay formats, or simply probes for microarray or other single-oligo assay formats. PriMux employs suffix array methods for efficient calculations on oligos 10-∼100 nt in length. TaqMan® primers and probes for each segment of Rift Valley fever virus were designed using PriMux, and lab testing comparing signatures designed using PriMux versus those designed using traditional methods demonstrated equivalent or better sensitivity for the PriMux-designed signatures compared to traditional signatures. In addition, we used PriMux to design TaqMan® primers and probes for unalignable or poorly alignable groups of targets: that is, all segments of Rift Valley fever virus analyzed as a single target set of 198 sequences, or all 2863 Dengue virus genomes for all four serotypes available at the time of our analysis. The PriMux software is available as open source from http://sourceforge.net/projects/PriMux. PMID:22485178

  19. On function classes related pertaining to strong approximation of double Fourier series

    NASA Astrophysics Data System (ADS)

    Baituyakova, Zhuldyz

    2015-09-01

    The investigation of embedding of function classes began a long time ago. After Alexits [1], Leindler [2], and Gogoladze[3] investigated estimates of strong approximation by Fourier series in 1965, G. Freud[4] raised the corresponding saturation problem in 1969. The list of the authors dealing with embedding problems partly is also very long. It suffices to mention some names: V. G. Krotov, W. Lenski, S. M. Mazhar, J. Nemeth, E. M. Nikisin, K. I. Oskolkov, G. Sunouchi, J. Szabados, R. Taberski and V. Totik. Study on this topic has since been carried on over a decade, but it seems that most of the results obtained are limited to the case of one dimension. In this paper, embedding results are considered which arise in the strong approximation by double Fourier series. We prove theorem on the interrelation between the classes Wr1,r2HS,M ω and H(λ, p, r1, r2, ω(δ1, δ2)), in the one-dimensional case proved by L. Leindler.

  20. Transactions Among Partners.

    ERIC Educational Resources Information Center

    Luther, Joseph

    The past and historical future of the Partnership for Rural Improvement (PRI) and its model for rural planning and development are explored. Evolution of the rural-urban conceptual dichotomy is reviewed. Rural is perceived as a state of being rather than a place. Implications of the PRI experience for new knowledge and skills in rural community…

  1. Peeking inside the "Black Box" of the Flynn Effect: Evidence from Three Wechsler Instruments

    ERIC Educational Resources Information Center

    Zhou, Xiaobin; Zhu, Jianjun; Weiss, Lawrence G.

    2010-01-01

    This study investigated the Wechsler Performance IQ (PIQ) or Perceptual Reasoning Index (PRI)/ Perceptual Organization Index (POI) change over time and its relation to ability levels. PIQ or PRI/ POI was analyzed because of the known sensitivity of nonverbal scales to the Flynn effect. Scores were analyzed using two methods. First, analysis of…

  2. Poroelastic Relaxation Indentation of Thin Layers of Gels

    DTIC Science & Technology

    2011-10-24

    polymer rheology J. Chem. Phys. 133, 184904 (2010) Microviscoelasticity of adhesive hard sphere dispersions : Tracer particle microrheology of aqueous...PRI agree well with those obtained from a compression test.17 The PRI has been applied to alginate hydrogels,13,17 polydimethylsiloxane (PDMS) swollen

  3. The Evolution of the Mexican Military: From the Mexican Revolution In 1910 to 2014

    DTIC Science & Technology

    2015-03-01

    that still relllllins after the seventy-one year m le of the PRI. Additionally, it discusses some of the historical effects of civilian control within...that still remains after the seventy-one year rule of the PRI. Additionally, it discusses some of the historical effects of civilian control within...4 D. POTENTIAL EXPLANATIONS AND HYPOTHESES .............................5 E. HISTORICAL BACKGROUND

  4. A Hand-Off Mechanism for Primosome Assembly in Replication Restart

    SciTech Connect

    Lopper, Matthew; Boonsombat, Ruethairat; Sandler, Steven J.; Keck, James L.

    2008-11-12

    Collapsed DNA replication forks must be reactivated through origin-independent reloading of the replication machinery (replisome) to ensure complete duplication of cellular genomes. In E. coli, the PriA-dependent pathway is the major replication restart mechanism and requires primosome proteins PriA, PriB, and DnaT for replisome reloading. However, the molecular mechanisms that regulate origin-independent replisome loading are not fully understood. Here, we demonstrate that assembly of primosome protein complexes represents a key regulatory mechanism, as inherently weak PriA-PriB and PriB-DnaT interactions are strongly stimulated by single-stranded DNA. Furthermore, the binding site on PriB for single-stranded DNA partially overlaps the binding sites for PriA and DnaT, suggesting a dynamic primosome assembly process in which single-stranded DNA is handed off from one primosome protein to another as a repaired replication fork is reactivated. This model helps explain how origin-independent initiation of DNA replication is restricted to repaired replication forks, preventing overreplication of the genome.

  5. Deconvolution of pigment and physiologically related photochemical reflectance index variability at the canopy scale over an entire growing season.

    PubMed

    Hmimina, G; Merlier, E; Dufrêne, E; Soudani, K

    2015-08-01

    The sensitivity of the photochemical reflectance index (PRI) to leaf pigmentation and its impacts on its potential as a proxy for light-use efficiency (LUE) have recently been shown to be problematic at the leaf scale. Most leaf-to-leaf and seasonal variability can be explained by such a confounding effect. This study relies on the analysis of PRI light curves that were generated at the canopy scale under natural conditions to derive a precise deconvolution of pigment-related and physiologically related variability in the PRI. These sources of variability were explained by measured or estimated physiologically relevant variables, such as soil water content, that can be used as indicators of water availability and canopy chlorophyll content. The PRI mainly reflected the variability in the pigment content of the canopy. However, the corrected PRI, which was obtained by subtracting the pigment-related seasonal variability from the PRI measurement, was highly correlated with the upscaled LUE measurements. Moreover, the sensitivity of the PRI to the leaf pigment content may mask the PRI versus LUE relationship or result in an artificial relationship that reflects the relationship of chlorophyll versus LUE, depending on the species phenology.

  6. Cooperative processing of primary miRNAs by DUS16 and DCL3 in the unicellular green alga Chlamydomonas reinhardtii

    PubMed Central

    Cerutti, Heriberto

    2017-01-01

    ABSTRACT We have previously reported that the RNA-binding protein Dull slicer 16 (DUS16) plays a key role in the processing of primary miRNAs (pri-miRNAs) in the unicellular green alga Chlamydomonas reinhardtii. In the present report, we elaborate on the interaction of DUS16 with Dicer-like 3 (DCL3) during pri-miRNA processing. Comprehensive analyses of small RNA libraries derived from mutant and wild-type algal strains allowed the de novo prediction of 35 pri-miRNA genes, including 9 previously unknown ones. The pri-miRNAs dependent on DUS16 for processing largely overlapped with those dependent on DCL3. Our findings suggest that DUS16 and DCL3 work cooperatively, presumably as components of a microprocessor complex, in the processing of the majority of pri-miRNAs in C. reinhardtii. PMID:28289490

  7. Biological Evaluation of Double Point Modified Analogues of 1,25-Dihydroxyvitamin D₂ as Potential Anti-Leukemic Agents.

    PubMed

    Corcoran, Aoife; Nadkarni, Sharmin; Yasuda, Kaori; Sakaki, Toshiyuki; Brown, Geoffrey; Kutner, Andrzej; Marcinkowska, Ewa

    2016-02-01

    Structurally similar double-point modified analogues of 1,25-dihydroxyvitamin D₂ (1,25D₂) were screened in vitro for their pro-differentiating activity against the promyeloid cell line HL60. Their affinities towards human full length vitamin D receptor (VDR) and metabolic stability against human vitamin D 24-hydroxylase (CYP24A1) were also tested. The analogues (PRI-1730, PRI-1731, PRI-1732, PRI-1733 and PRI-1734) contained 5,6-trans modification of the A-ring and of the triene system, additional hydroxyl or unsaturation at C-22 in the side chain and reversed absolute configuration (24-epi) at C-24 of 1,25D₂. As presented in this paper, introduction of selected structural modifications simultaneously in two distinct parts of the vitamin D molecule resulted in a divergent group of analogues. Analogues showed lower VDR affinity in comparison to that of the parent hormones, 1,25D₂ and 1,25D₃, and they caused effective HL60 cell differentiation only at high concentrations of 100 nM and above. Unexpectedly, introducing of a 5,6-trans modification combined with C-22 hydroxyl and 24-epi configuration switched off entirely the cell differentiation activity of the analogue (PRI-1734). However, this analogue remained a moderate substrate for CYP24A1, as it was metabolized at 22%, compared to 35% for 1,25D₂. Other analogues from this series were either less (12% for PRI-1731 and PRI-1733) or more (52% for PRI-1732) resistant to the enzymatic deactivation. Although the inactive analogue PRI-1734 failed to show VDR antagonism, when tested in HL60 cells, its structure might be a good starting point for our design of a vitamin D antagonist.

  8. Biological Evaluation of Double Point Modified Analogues of 1,25-Dihydroxyvitamin D2 as Potential Anti-Leukemic Agents

    PubMed Central

    Corcoran, Aoife; Nadkarni, Sharmin; Yasuda, Kaori; Sakaki, Toshiyuki; Brown, Geoffrey; Kutner, Andrzej; Marcinkowska, Ewa

    2016-01-01

    Structurally similar double-point modified analogues of 1,25-dihydroxyvitamin D2 (1,25D2) were screened in vitro for their pro-differentiating activity against the promyeloid cell line HL60. Their affinities towards human full length vitamin D receptor (VDR) and metabolic stability against human vitamin D 24-hydroxylase (CYP24A1) were also tested. The analogues (PRI-1730, PRI-1731, PRI-1732, PRI-1733 and PRI-1734) contained 5,6-trans modification of the A-ring and of the triene system, additional hydroxyl or unsaturation at C-22 in the side chain and reversed absolute configuration (24-epi) at C-24 of 1,25D2. As presented in this paper, introduction of selected structural modifications simultaneously in two distinct parts of the vitamin D molecule resulted in a divergent group of analogues. Analogues showed lower VDR affinity in comparison to that of the parent hormones, 1,25D2 and 1,25D3, and they caused effective HL60 cell differentiation only at high concentrations of 100 nM and above. Unexpectedly, introducing of a 5,6-trans modification combined with C-22 hydroxyl and 24-epi configuration switched off entirely the cell differentiation activity of the analogue (PRI-1734). However, this analogue remained a moderate substrate for CYP24A1, as it was metabolized at 22%, compared to 35% for 1,25D2. Other analogues from this series were either less (12% for PRI-1731 and PRI-1733) or more (52% for PRI-1732) resistant to the enzymatic deactivation. Although the inactive analogue PRI-1734 failed to show VDR antagonism, when tested in HL60 cells, its structure might be a good starting point for our design of a vitamin D antagonist. PMID:26840307

  9. The Effect of Analogues of 1α,25-Dihydroxyvitamin D₂ on the Regrowth and Gene Expression of Human Colon Cancer Cells Refractory to 5-Fluorouracil.

    PubMed

    Neska, Jacek; Swoboda, Paweł; Przybyszewska, Małgorzata; Kotlarz, Agnieszka; Bolla, Narasimha Rao; Miłoszewska, Joanna; Grygorowicz, Monika Anna; Kutner, Andrzej; Markowicz, Sergiusz

    2016-06-14

    This study aimed to evaluate the capacity of hypocalcemic analogues of 1α,25-dihydroxyvitamin D₂ (1,25D2) and 1α,25-dihydroxyvitamin D₃ (1,25D3) to inhibit regrowth and regulate the stemness-related gene expression in colon cancer cells undergoing renewal after exposure to 5-fluorouracil (5-FU). All of the tested analogues of 1,25D2 equally potently decreased the clonogenicity and the proliferative activity of HT-29 cells which survived the exposure to 5-FU, but differently regulated gene expression of these cells during their renewal. 1,25D2 and analogues (PRI-1907 and PRI-1917), as well as 1,25D3 and analogue PRI-2191, decreased the relative expression level of several stemness-related genes, such as NANOG, OCT3/4, PROM1, SOX2, ALDHA1, CXCR4, in HT-29/5-FU cells during their renewal, in comparison to untreated HT-29/5-FU cells. The other 1,25D2 analogues (PRI-1906 and PRI-1916) were not capable of downregulating the expression of these stemness-related genes as the analogues PRI-1907 and PRI-1917 did. All of the tested vitamin D analogues upregulated CDH1, the gene encoding E-cadherin associated with epithelial phenotype. Out of the series of analogues studied, side-chain branched analogues of 1,25D2 (PRI-1907, PRI-1917) and the analogue of 1,25D3 (PRI-2191) might be used to target cancer cells with stem-like phenotypes that survive conventional chemotherapy.

  10. Dynamics of spectral bio-indicators and their correlations with light use efficiency using directional observations at a Douglas-fir forest

    NASA Astrophysics Data System (ADS)

    Cheng, Yen-Ben; Middleton, Elizabeth M.; Hilker, Thomas; Coops, Nicholas C.; Black, T. Andrew; Krishnan, Praveena

    2009-09-01

    The carbon science community must rely on satellite remote sensing to obtain global estimates of photosynthetic activity, typically expressed as net primary production (NPP), gross primary production (GPP) or light use efficiency (LUE). The photochemical reflectance index (PRI), calculated as a normalized difference reflectance index using a physiologically active green band (~531 nm) and another physiologically insensitive green reference band (~570 nm), denoted as PRI(570), has been confirmed in many studies as being strongly related to LUE. Here, we examined the potential of utilizing PRI(570) observations under different illumination conditions for canopy LUE estimation of a forest. In order to evaluate this, directional hyperspectral reflectance measurements were collected continuously throughout the daytime periods using an automated spectroradiometer in conjunction with tower-based eddy covariance fluxes and environmental measurements at a coastal conifer forest in British Columbia, Canada throughout the 2006 growing season. A parameter calculated as the PRI(570) difference (dPRI(570)) between shaded versus sunlit canopy foliage sectors showed a strong correlation to tower-based LUE. The seasonal pattern for this correlation produced a dramatic change from high negative (r ~ -0.80) values in the springtime and early fall to high positive values (r ~ 0.80) during the summer months, which could represent the seasonality of physiological characteristics and environmental factors. Although the PRI(570) successfully tracked canopy LUE, one or both of its green bands (~531 and 570 nm) used to calculate the PRI are unavailable on most existing and planned near-term satellites. Therefore, we examined the potential to use 24 other spectral indexes for LUE monitoring that might be correlated to PRI, and thereby a substitute for it. We also continued our previous investigations into the influence of illumination conditions on the observed PRI(570) and other indexes

  11. Microprocessor dynamics and interactions at endogenous imprinted C19MC microRNA genes.

    PubMed

    Bellemer, Clément; Bortolin-Cavaillé, Marie-Line; Schmidt, Ute; Jensen, Stig Mølgaard Rask; Kjems, Jørgen; Bertrand, Edouard; Cavaillé, Jérôme

    2012-06-01

    Nuclear primary microRNA (pri-miRNA) processing catalyzed by the DGCR8-Drosha (Microprocessor) complex is highly regulated. Little is known, however, about how microRNA biogenesis is spatially organized within the mammalian nucleus. Here, we image for the first time, in living cells and at the level of a single microRNA cluster, the intranuclear distribution of untagged, endogenously-expressed pri-miRNAs generated at the human imprinted chromosome 19 microRNA cluster (C19MC), from the environment of transcription sites to single molecules of fully released DGCR8-bound pri-miRNAs dispersed throughout the nucleoplasm. We report that a large fraction of Microprocessor concentrates onto unspliced C19MC pri-miRNA deposited in close proximity to their genes. Our live-cell imaging studies provide direct visual evidence that DGCR8 and Drosha are targeted post-transcriptionally to C19MC pri-miRNAs as a preformed complex but dissociate separately. These dynamics support the view that, upon pri-miRNA loading and most probably concomitantly with Drosha-mediated cleavages, Microprocessor undergoes conformational changes that trigger the release of Drosha while DGCR8 remains stably bound to pri-miRNA.

  12. SUMOylation at K707 of DGCR8 controls direct function of primary microRNA

    PubMed Central

    Zhu, Changhong; Chen, Cheng; Huang, Jian; Zhang, Hailong; Zhao, Xian; Deng, Rong; Dou, Jinzhuo; Jin, Hui; Chen, Ran; Xu, Ming; Chen, Qin; Wang, Yanli; Yu, Jianxiu

    2015-01-01

    DGCR8 (DiGeorge syndrome critical region gene 8) is essential for primary microRNA (pri-miRNA) processing in the cell nucleus. It specifically combines with Drosha, a nuclear RNase III enzyme, to form the Microprocessor complex (MC) that cleaves pri-miRNA to precursor miRNA (pre-miRNA), which is further processed to mature miRNA by Dicer, a cytoplasmic RNase III enzyme. Increasing evidences suggest that pri-/pre-miRNAs have direct functions in regulation of gene expression, however the underlying mechanism how it is fine-tuned remains unclear. Here we find that DGCR8 is modified by SUMO1 at the major site K707, which can be promoted by its ERK-activated phosphorylation. SUMOylation of DGCR8 enhances the protein stability by preventing the degradation via the ubiquitin proteasome pathway. More importantly, SUMOylation of DGCR8 does not alter its association with Drosha, the MC activity and miRNA biogenesis, but rather influences its affinity with pri-miRNAs. This altered affinity of DGCR8 with pri-miRNAs seems to control the direct functions of pri-miRNAs in recognition and repression of the target mRNAs, which is evidently linked to the DGCR8 function in regulation of tumorigenesis and cell migration. Collectively, our data suggest a novel mechanism that SUMOylation of DGCR8 controls direct functions of pri-miRNAs in gene silencing. PMID:26202964

  13. Selective inhibitor of Wnt/β-catenin/CBP signaling ameliorates hepatitis C virus-induced liver fibrosis in mouse model.

    PubMed

    Tokunaga, Yuko; Osawa, Yosuke; Ohtsuki, Takahiro; Hayashi, Yukiko; Yamaji, Kenzaburo; Yamane, Daisuke; Hara, Mitsuko; Munekata, Keisuke; Tsukiyama-Kohara, Kyoko; Hishima, Tsunekazu; Kojima, Soichi; Kimura, Kiminori; Kohara, Michinori

    2017-03-23

    Chronic hepatitis C virus (HCV) infection is one of the major causes of serious liver diseases, including liver cirrhosis. There are no anti-fibrotic drugs with efficacy against liver cirrhosis. Wnt/β-catenin signaling has been implicated in the pathogenesis of a variety of tissue fibrosis. In the present study, we investigated the effects of a β-catenin/CBP (cyclic AMP response element binding protein) inhibitor on liver fibrosis. The anti-fibrotic activity of PRI-724, a selective inhibitor of β-catenin/CBP, was assessed in HCV GT1b transgenic mice at 18 months after HCV genome expression. PRI-724 was injected intraperitoneally or subcutaneously in these mice for 6 weeks. PRI-724 reduced liver fibrosis, which was indicated by silver stain, Sirius Red staining, and hepatic hydroxyproline levels, in HCV mice while attenuating αSMA induction. PRI-724 led to increased levels of matrix metalloproteinase (MMP)-8 mRNA in the liver, along with elevated levels of intrahepatic neutrophils and macrophages/monocytes. The induced intrahepatic neutrophils and macrophages/monocytes were identified as the source of MMP-8. In conclusion, PRI-724 ameliorated HCV-induced liver fibrosis in mice. We hypothesize that inhibition of hepatic stellate cells activation and induction of fibrolytic cells expressing MMP-8 contribute to the anti-fibrotic effects of PRI-724. PRI-724 is a drug candidate which possesses anti-fibrotic effect.

  14. Integrating Chlorophyll fapar and Nadir Photochemical Reflectance Index from EO-1/Hyperion to Predict Cornfield Daily Gross Primary Production

    NASA Technical Reports Server (NTRS)

    Zhang, Qingyuan; Middleton, Elizabeth M.; Cheng, Yen-Ben; Huemmrich, K. Fred; Cook, Bruce D.; Corp, Lawrence A.; Kustas, William P.; Russ, Andrew L.; Prueger, John H.; Yao, Tian

    2016-01-01

    The concept of light use efficiency (Epsilon) and the concept of fraction of photosynthetically active ration (PAR) absorbed for vegetation photosynthesis (PSN), i.e., fAPAR (sub PSN), have been widely utilized to estimate vegetation gross primary productivity (GPP). It has been demonstrated that the photochemical reflectance index (PRI) is empirically related to e. An experimental US Department of Agriculture (USDA) cornfield in Maryland was selected as our study field. We explored the potential of integrating fAPAR(sub chl) (defined as the fraction of PAR absorbed by chlorophyll) and nadir PRI (PRI(sub nadir)) to predict cornfield daily GPP. We acquired nadir or near-nadir EO-1/Hyperion satellite images that covered the cornfield and took nadir in-situ field spectral measurements. Those data were used to derive the PRI(sub nadir) and fAPAR (sub chl). The fAPAR (sub chl) is retrieved with the advanced radiative transfer model PROSAIL2 and the Metropolis approach, a type of Markov Chain Monte Carlo (MCMC) estimation procedure. We define chlorophyll light use efficiency Epsilon (sub chl) as the ratio of vegetation GPP as measured by eddy covariance techniques to PAR absorbed by chlorophyll (Epsilon(sub chl) = GPP/APAR (sub chl). Daily Epsilon (sub chl) retrieved with the EO-1 Hyperion images was regressed with a linear equation of PRI (sub nadir) Epsilon (sub chl) = Alpha × PRI (sub nadir) + Beta). The satellite Epsilon(sub chl- PRI (sub nadir) linear relationship for the cornfield was implemented to develop an integrated daily GPP model [GPP = (Alpha × PRI(sub nadir) + Beta) × fAPAR (sub chl) × PAR], which was evaluated with fAPAR (sub chl) and PRI (sub nadir) retrieved from field measurements. Daily GPP estimated with this fAPAR (sub chl-) PRI (nadir) integration model was strongly correlated with the observed tower in-situ daily GPP (R(sup 2) = 0.93); with a root mean square error (RMSE) of 1.71 g C mol-(sup -1) PPFD and coefficient of variation (CV) of 16

  15. TUNS user guide supplement: Data dictionary

    NASA Technical Reports Server (NTRS)

    1988-01-01

    Provided is a data dictionary for the Technology Utilization Network System (TUNS) providing for each element name the long name, data type, data size, descriptive name and description, data of PRI clause, legal values, and location used.

  16. Developing a Roadmap for Integrating Computational and In Vitro Approaches in Risk-Based Chemical Safety Decisions (SSCT-SweTox)

    EPA Science Inventory

    Multiple drivers shape the types of chemical assessments performed within many regulatory agencies including economic considerations, data availability, and the ultimate application of the assessment. The result is that chemical assessments are “fit-for-purpose” ranging from pri...

  17. Two-coordinate terminal zinc hydride complexes: synthesis, structure and preliminary reactivity studies.

    PubMed

    Dawkins, Michael J C; Middleton, Ewart; Kefalidis, Christos E; Dange, Deepak; Juckel, Martin M; Maron, Laurent; Jones, Cameron

    2016-08-18

    The first examples of essentially two-coordinate, monomeric zinc hydride complexes, LZnH (L = -N(Ar)(SiR3)) (Ar = C6H2{C(H)Ph2}2R'-2,6,4; R = Me, R' = Pr(i) (L'); R = Pr(i), R' = Me (L*); R = Pr(i), R' = Pr(i) (L(†))) have been prepared and shown by crystallographic studies to have near linear N-Zn-H fragments. The results of computational studies imply that any PhZn interactions in the compounds are weak at best. Preliminary reactivity studies reveal the compounds to be effective for the stoichiometric hydrozincation and catalytic hydrosilylation of carbonyl compounds.

  18. Quasi-Square Hole with Optimum Shape in an Infinite Plate Subjected to In-Plane Loading. Optimization of Inner and Outer Boundaries of Beams and Plates with Holes,

    DTIC Science & Technology

    1982-04-01

    Professr Isaac Pried Library Se-vices Department P. 0. Box 158 Boeton University 9700 South Case Avenue Madison, Pennsylvania 15663 Department of Mathanatics Argonne, Illinois 60440 Boton, Massachusetts 02215 -3- .JAL

  19. Solution Method of Multi-Product Two-Stage Logistics Problem with Constraints of Delivery Course

    NASA Astrophysics Data System (ADS)

    Ataka, Shinichiro; Gen, Mitsuo

    The logistics network design is one of the important phase of Supply Chain Management (SCM) and it is the problem that should be optimized for long-term promotion of efficiency of the whole supply chain. Usually a plant produces different type of products. Even if it is a factory of the same company, delivery is different by a kind of a produced product. The restrictions which this model has are deeply concerned with TP in the real world. In this paper, we consider the logistics network design problems with multi-products and constraints for delivery course. To solve the problem, we used a hybrid priority-based Genetic Algorithm (h-priGA), and we tried the comparison experiment with priority-based Genetic Algorithm (priGA)and h-priGA, we show it about the effectiveness of h-priGA.

  20. Vasodilator-stimulated phosphoprotein-phosphorylation assay in patients on clopidogrel: does standardisation matter?

    PubMed

    Freynhofer, Matthias K; Bruno, Veronika; Willheim, Martin; Hübl, Wolfgang; Wojta, Johann; Huber, Kurt

    2012-03-01

    The vasodilator-stimulated phosphoprotein-phosphorylation (VASP-P) flow-cytometric assay is mainly used in clinical trials to measure thienopyridine effects. However, there are remarkable differences in the reported optimal cut-offs, ranging from 48-61% platelet reactivity index (PRI). We therefore investigated whether a lack of standardisation might explain the differences in the cut-offs. We measured VASP-P in 62 individuals. PRI was calculated using the mean, geometric mean and median fluorescence intensities (FI). Stability of the blood-samples (time-to-assay, 0-2 days) and stability of the processed samples (0-120 minutes) within the recommended time-span were tested. Time-to-assay significantly influenced the PRI (p<0.001): the PRI from mean FI after two days was lower compared to values on day 1 (52 ± 22.9 vs. 57.7 ± 24.1, p<0.001). The PRI from the geometric mean FI after two days was lower compared to day 0 as well as day 1 (51.3 ± 23 vs. 58.2 ± 24.2 and vs. 59.1 ± 23.7, both p<0.001). The PRI from median FI was stable over time (day 0: 59.1 ± 25%, day 1: 59.7 ± 24.1% and day 2: 56.4 ± 23.9%, all p=ns). Furthermore, the lag time of the processed samples significantly altered the PRI (all p<0.001) with a maximum difference for PRI based on geometric mean FI after 90 minutes compared to baseline (Δ=3.92%PRI, p<0.001). The differences in the reported cut-offs might be explained by a lack of standardisation. More precise standardisation is inevitable, as the PRI significantly depends on the method of calculation, the time-to-assay as well as on the lag time after processing. Tolerably stable results were obtained for the PRI from the median FI.

  1. Availability Estimate of a Conceptual ESM System.

    DTIC Science & Technology

    1979-06-01

    effect transistors (GaAs FET) 23% Microwave diodes 21% Coax connectors 12% Ferrite isolators 12% Bandpass filters 8% Integrated circuits, linear 10...determination, pulse repetition interval (PRI) determination, and bearing determination to within a quadrant or better. Signal levels across the antenna ...intercept. It involves frequency and PRI determination and computer sorting for threats. Signal levels across the antenna may be down as much as 17 dB

  2. Reasons Military Patients with Primary Care Access Leave an Emergency Department Waiting Room Before Seeing a Provider

    DTIC Science & Technology

    2012-10-01

    department, leave without being seen, pri mary care access, wait times Emergency department (ED) waiting rooms can be anxietyprovoking, uncomfortable, and...Our patients, despite being in a closed healthcare system with ready access to care, identified long wait times as the pri- mary reason they left... Somerville , Everett. http://www.boston.com/yourtown/news/ cambridge/2011/02/check cambridge hospital emerg.html. Accessed February 21, 2012. 19. In an

  3. Photoperiod and temperature constraints on the relationship between the photochemical reflectance index and the light use efficiency of photosynthesis in Pinus strobus.

    PubMed

    Fréchette, Emmanuelle; Chang, Christine Yao-Yun; Ensminger, Ingo

    2016-03-01

    The photochemical reflectance index (PRI) is a proxy for the activity of the photoprotective xanthophyll cycle and photosynthetic light use efficiency (LUE) in plants. Evergreen conifers downregulate photosynthesis in autumn in response to low temperature and shorter photoperiod, and the dynamic xanthophyll cycle-mediated non-photochemical quenching (NPQ) is replaced by sustained NPQ. We hypothesized that this shift in xanthophyll cycle-dependent energy partitioning during the autumn is the cause for variations in the PRI-LUE relationship. In order to test our hypothesis, we characterized energy partitioning and pigment composition during a simulated summer-autumn transition in a conifer and assessed the effects of temperature and photoperiod on the PRI-LUE relationship. We measured gas exchange, chlorophyll fluorescence and leaf reflectance during the photosynthetic downregulation in Pinus strobus L. seedlings exposed to low temperature/short photoperiod or elevated temperature/short photoperiod conditions. Shifts in energy partitioning during simulated autumn were observed when the pools of chlorophylls decreased and pools of photoprotective carotenoids increased. On a seasonal timescale, PRI was controlled by carotenoid pool sizes rather than xanthophyll cycle dynamics. Photochemical reflectance index variation under cold autumn conditions mainly reflected long-term pigment pool adjustments associated with sustained NPQ, which impaired the PRI-LUE relationship. Exposure to warm autumn conditions prevented the induction of sustained NPQ but still impaired the PRI-LUE relationship. We therefore conclude that alternative zeaxanthin-independent NPQ mechanisms, which remain undetected by the PRI, are present under both cold and warm autumn conditions, contributing to the discrepancy in the PRI-LUE relationship during autumn.

  4. Integrating Solar Induced Fluorescence and the Photochemical Reflectance Index for Estimating Gross Primary Production in a Cornfield

    NASA Technical Reports Server (NTRS)

    Cheng, Yen-Ben; Middleton, Elizabeth M.; Zhang, Qingyuan; Huemmrich, Karl F.; Campbell, Petya K. E.; Corp, Lawrence A.; Cook, Bruce D.; Kustas, William P.; Daughtry, Criag S.

    2013-01-01

    The utilization of remotely sensed observations for light use efficiency (LUE) and tower-based gross primary production (GPP) estimates was studied in a USDA cornfield. Nadir hyperspectral reflectance measurements were acquired at canopy level during a collaborative field campaign conducted in four growing seasons. The Photochemical Reflectance Index (PRI) and solar induced chlorophyll fluorescence (SIF), were derived. SIF retrievals were accomplished in the two telluric atmospheric oxygen absorption features centered at 688 nm (O2-B) and 760 nm (O2-A). The PRI and SIF were examined in conjunction with GPP and LUE determined by flux tower-based measurements. All of these fluxes, environmental variables, and the PRI and SIF exhibited diurnal as well as day-to-day dynamics across the four growing seasons. Consistent with previous studies, the PRI was shown to be related to LUE (r2 = 0.54 with a logarithm fit), but the relationship varied each year. By combining the PRI and SIF in a linear regression model, stronger performances for GPP estimation were obtained. The strongest relationship (r2 = 0.80, RMSE = 0.186 mg CO2/m2/s) was achieved when using the PRI and SIF retrievals at 688 nm. Cross-validation approaches were utilized to demonstrate the robustness and consistency of the performance. This study highlights a GPP retrieval method based entirely on hyperspectral remote sensing observations.

  5. Processing of microRNA primary transcripts requires heme in mammalian cells.

    PubMed

    Weitz, Sara H; Gong, Ming; Barr, Ian; Weiss, Shimon; Guo, Feng

    2014-02-04

    DiGeorge syndrome critical region gene 8 (DGCR8) is the RNA-binding partner protein of the nuclease Drosha. DGCR8 and Drosha recognize and cleave primary transcripts of microRNAs (pri-miRNAs) in the maturation of canonical microRNAs (miRNAs) in animals. We previously reported that human, frog, and starfish DGCR8 bind heme when expressed in Escherichia coli and that Fe(III) heme activates apoDGCR8 in reconstituted pri-miRNA processing assays. However, the physiological relevance of heme in miRNA maturation has not been clear. Here, we present a live-cell pri-miRNA processing assay that produces robust signals and faithfully indicates DGCR8 and Drosha activities. We demonstrate that all known heme-binding-deficient DGCR8 mutants are defective in pri-miRNA processing in HeLa cells. DGCR8 contains a previously uncharacterized heme-binding motif, "IPCL," that is also required for its activity. Heme availability and biosynthesis in HeLa cells positively affect pri-miRNA processing and production of mature miRNA. These results establish an essential function for heme in pri-miRNA processing in mammalian cells. Our study suggests that abnormal heme biosynthesis and degradation may contribute to diseases via miRNA-mediated gene regulation networks.

  6. Global Prioritization of Disease Candidate Metabolites Based on a Multi-omics Composite Network

    PubMed Central

    Yao, Qianlan; Xu, Yanjun; Yang, Haixiu; Shang, Desi; Zhang, Chunlong; Zhang, Yunpeng; Sun, Zeguo; Shi, Xinrui; Feng, Li; Han, Junwei; Su, Fei; Li, Chunquan; Li, Xia

    2015-01-01

    The identification of disease-related metabolites is important for a better understanding of metabolite pathological processes in order to improve human medicine. Metabolites, which are the terminal products of cellular regulatory process, can be affected by multi-omic processes. In this work, we propose a powerful method, MetPriCNet, to predict and prioritize disease candidate metabolites based on integrated multi-omics information. MetPriCNet prioritized candidate metabolites based on their global distance similarity with seed nodes in a composite network, which integrated multi-omics information from the genome, phenome, metabolome and interactome. After performing cross-validation on 87 phenotypes with a total of 602 metabolites, MetPriCNet achieved a high AUC value of up to 0.918. We also assessed the performance of MetPriCNet on 18 disease classes and found that 4 disease classes achieved an AUC value over 0.95. Notably, MetPriCNet can also predict disease metabolites without known disease metabolite knowledge. Some new high-risk metabolites of breast cancer were predicted, although there is a lack of known disease metabolite information. A predicted disease metabolic landscape was constructed and analyzed based on the results of MetPriCNet for 87 phenotypes to help us understand the genetic and metabolic mechanism of disease from a global view. PMID:26598063

  7. Monitoring water stress and fruit quality in an orange orchard under regulated deficit irrigation using narrow-band structural and physiological remote sensing indices

    NASA Astrophysics Data System (ADS)

    Stagakis, S.; González-Dugo, V.; Cid, P.; Guillén-Climent, M. L.; Zarco-Tejada, P. J.

    2012-07-01

    This paper deals with the monitoring of water status and the assessment of the effect of stress on citrus fruit quality using structural and physiological remote sensing indices. Four flights were conducted over a citrus orchard in 2009 using an unmanned aerial vehicle (UAV) carrying a multispectral camera with six narrow spectral bands in the visible and near infrared. Physiological indices such as the Photochemical Reflectance Index (PRI570), a new structurally robust PRI formulation that uses the 515 nm as the reference band (PRI515), and a chlorophyll ratio (R700/R670) were compared against the Normalized Difference Vegetation Index (NDVI), Renormalized Difference Vegetation Index (RDVI) and Modified Triangular Vegetation Index (MTVI) canopy structural indices for their performance in tracking water status and the effects of sustained water stress on fruit quality at harvest. The irrigation setup in the commercial orchard was compared against a treatment scheduled to satisfy full requirements (based on estimated crop evapotranspiration) using two regulated deficit irrigation (RDI) strategies. The water status of the trees throughout the experiment was monitored with frequent field measurements of stem water potential (Ψx), while titratable acidity (TA) and total soluble solids (TSS) were measured at harvest on selected trees from each irrigation treatment. The high spatial resolution of the multispectral imagery (30 cm pixel size) enabled identification of pure tree crown components, extracting the tree reflectance from shaded, sunlit and aggregated pixels. The physiological and structural indices were then calculated from each tree at the following levels: (i) pure sunlit tree crown, (ii) entire crown, aggregating the within-crown shadows, and (iii) simulating a lower resolution pixel, including tree crown, sunlit and shaded soil pixels. The resulting analysis demonstrated that both PRI formulations were able to track water status, except when water stress

  8. Estimating Light Use Efficiency Of A Pine And Beech Forest From Leaf To Ecosystem Scale Using The Photochemical Reflectance Index

    NASA Astrophysics Data System (ADS)

    Vanikiotis, Theofilos; Markos, Nikos; Stagakis, Stavros; Tzotsos, Angelos; Sykioti, Olga; Kyparissis, Aris

    2013-12-01

    The prospect of accurately tracking photosynthetic processes using satellite observations is very important for understanding and monitoring global carbon cycle and climate change. The present study investigates the efficiency of the Photochemical Reflectance Index (PRI) in detecting light use efficiency (ɛ) in different spatial scales. The study sites concern two dense and homogenous forests in the region of Epirus (Greece), one evergreen coniferous forest dominated by Pinus nigra species and one deciduous forest dominated by Fagus sylvatica. Field and laboratory measurements of canopy structure (Leaf Area Index - LAI, needle and shoot structure characteristics), leaf pigment concentrations, leaf photosynthesis and water potential were performed throughout the growth period. These measurements were used for an accurate description of the ecophysiological characteristics of the two species and thus the parameterization of a Canopy Photosynthesis Model in order to estimate canopy photosynthesis. During the same period, leaf and canopy reflectance measurements were performed in the field to test and evaluate PRI regarding it's efficiency to track ɛ in leaf and canopy scale. In order to investigate the potential application of PRI for estimating ɛ in a broader spatial scale, satellite hyperspectral or superspectral sensors can be used. Compact High Resolution Imaging Spectrometer (CHRIS) and Moderate Resolution Imaging Spectroradiometer (MODIS) are currently available for this purpose and their performances were tested within the present study. An agreement between the fluctuations of CHRIS PRI and the field measured canopy PRI has been found, with both of them appearing to track the ɛ fluctuation efficiently. However, MODIS PRI shows no intense fluctuation and no relationship with ɛ and field measured PRI, probably due to lack of atmospheric correction and the effects of viewing and illumination geometry.

  9. The core microprocessor component DiGeorge syndrome critical region 8 (DGCR8) is a nonspecific RNA-binding protein.

    PubMed

    Roth, Braden M; Ishimaru, Daniella; Hennig, Mirko

    2013-09-13

    MicroRNA (miRNA) biogenesis follows a conserved succession of processing steps, beginning with the recognition and liberation of an miRNA-containing precursor miRNA hairpin from a large primary miRNA transcript (pri-miRNA) by the Microprocessor, which consists of the nuclear RNase III Drosha and the double-stranded RNA-binding domain protein DGCR8 (DiGeorge syndrome critical region protein 8). Current models suggest that specific recognition is driven by DGCR8 detection of single-stranded elements of the pri-miRNA stem-loop followed by Drosha recruitment and pri-miRNA cleavage. Because countless RNA transcripts feature single-stranded-dsRNA junctions and DGCR8 can bind hundreds of mRNAs, we explored correlations between RNA binding properties of DGCR8 and specific pri-miRNA substrate processing. We found that DGCR8 bound single-stranded, double-stranded, and random hairpin transcripts with similar affinity. Further investigation of DGCR8/pri-mir-16 interactions by NMR detected intermediate exchange regimes over a wide range of stoichiometric ratios. Diffusion analysis of DGCR8/pri-mir-16 interactions by pulsed field gradient NMR lent further support to dynamic complex formation involving free components in exchange with complexes of varying stoichiometry, although in vitro processing assays showed exclusive cleavage of pri-mir-16 variants bearing single-stranded flanking regions. Our results indicate that DGCR8 binds RNA nonspecifically. Therefore, a sequential model of DGCR8 recognition followed by Drosha recruitment is unlikely. Known RNA substrate requirements are broad and include 70-nucleotide hairpins with unpaired flanking regions. Thus, specific RNA processing is likely facilitated by preformed DGCR8-Drosha heterodimers that can discriminate between authentic substrates and other hairpins.

  10. Successful disabling of the 5' UTR of HCV using adeno-associated viral vectors to deliver modular multimeric primary microRNA mimics.

    PubMed

    Bourhill, Tarryn; Arbuthnot, Patrick; Ely, Abdullah

    2016-09-01

    Chronic hepatitis C virus (HCV) infection is a major health concern and is strongly associated with cirrhosis, hepatocellular carcinoma and liver-related mortality. The HCV genome is the template for both protein translation and viral replication and, being RNA, is amenable to direct genetic silencing by RNA interference (RNAi). HCV is a highly mutable virus and is capable of escaping RNAi-mediated silencing. This has highlighted the importance of developing RNAi-based therapy that simultaneously targets multiple regions of the HCV genome. To develop a multi-targeting RNAi activator, a novel approach for the generation of anti-HCV gene therapy was investigated. Five artificial primary miRNA (pri-miR) were each designed to mimic the naturally occurring monomeric pri-miR-31. Potent knockdown of an HCV reporter was seen with four of the five constructs and were processed according to the intended design. The design of the individual pri-miR mimics enabled the modular assembly into multimeric mimics of any possible conformation. Consequently the four potent pri-miR mimics were used to generate polycistronic cassettes, which showed impressive silencing of an HCV target. To further their application as a gene therapy, recombinant adeno-associated viral (rAAV) vectors that express the polycistronic pri-miR mimics were generated. All AAV-delivered anti-HCV pri-miR mimics significantly knocked down the expression of an HCV target and showed inhibition of HCV replicon replication. Here we describe a protocol for the generation of therapeutic rAAVs that express modular polycistronic pri-miR cassettes allowing for rapid alteration and generation of tailored therapeutic constructs against HCV.

  11. Light Use Efficiency and Photochemical Reflectance Index: do we have a common basis defining them? Implications for productivity estimation (Invited)

    NASA Astrophysics Data System (ADS)

    Gitelson, A. A.; Gamon, J. A.

    2013-12-01

    There are at least three commonly used definitions of photosynthetic Light Use Efficiency (LUE) based on: (a) incident radiation (LUEinc); (b) total absorbed light (LUEtotal); and (c) radiation absorbed by photosynthetically active vegetation (LUEps). Consequently, LUE values reported do not have a common basis, bringing confusion and limiting the utility of reported LUE values for comparative analyses. Not surprisingly, the value of LUE reported in literature varies by a factor of three. Similarly, the Photochemical Reflectance Index (PRI) has different operational definitions, resulting in a wide range of reported values for comparable conditions. The objectives of this paper are to investigate (a) temporal behavior of each definition of LUE; and (b) factors affecting PRI, often used as a surrogate of LUE at leaf and canopy levels. We focused on annual and winter-deciduous vegetation where total chlorophyll content is closely tied to the seasonal dynamics of GPP. In these conditions, LUEinc is closely related to total plant chlorophyll (Chl) content. LUEtotal oscillates around a constant value during the vegetative stage, depending mainly on plant physiological status, PAR composition and magnitude, while in reproductive and senescence stages it relates closely to Chl content. LUEps may vary 2- to 3-fold during the growing season with no clear seasonal pattern, and does not seem to be related to any biophysical characteristic studied; rather, it depends on the physiological status of vegetation, PAR composition and magnitude as well as air temperature and soil moisture. At the leaf level, PRI depends greatly on pigment content and composition and relates closely to the ratio of Chl to carotenoid content. At the canopy and stand levels, both total plant Chl content and green LAI are responsible for more than 95% of PRI variation, demonstrating that PRI is confounded by pigment pool sizes and canopy structure in these conditions. Importantly, the close relationship

  12. Remotely-sensed detection of effects of extreme droughts on gross primary production.

    PubMed

    Vicca, Sara; Balzarolo, Manuela; Filella, Iolanda; Granier, André; Herbst, Mathias; Knohl, Alexander; Longdoz, Bernard; Mund, Martina; Nagy, Zoltan; Pintér, Krisztina; Rambal, Serge; Verbesselt, Jan; Verger, Aleixandre; Zeileis, Achim; Zhang, Chao; Peñuelas, Josep

    2016-06-15

    Severe droughts strongly impact photosynthesis (GPP), and satellite imagery has yet to demonstrate its ability to detect drought effects. Especially changes in vegetation functioning when vegetation state remains unaltered (no browning or defoliation) pose a challenge to satellite-derived indicators. We evaluated the performance of different satellite indicators to detect strong drought effects on GPP in a beech forest in France (Hesse), where vegetation state remained largely unaffected while GPP decreased substantially. We compared the results with three additional sites: a Mediterranean holm oak forest (Puéchabon), a temperate beech forest (Hainich), and a semi-arid grassland (Bugacpuszta). In Hesse, a three-year reduction in GPP following drought was detected only by the Enhanced Vegetation Index (EVI). The Photochemical Reflectance Index (PRI) also detected this drought effect, but only after normalization for absorbed light. In Puéchabon normalized PRI outperformed the other indicators, while the short-term drought effect in Hainich was not detected by any tested indicator. In contrast, most indicators, but not PRI, captured the drought effects in Bugacpuszta. Hence, PRI improved detection of drought effects on GPP in forests and we propose that PRI normalized for absorbed light is considered in future algorithms to estimate GPP from space.

  13. Remotely-sensed detection of effects of extreme droughts on gross primary production

    PubMed Central

    Vicca, Sara; Balzarolo, Manuela; Filella, Iolanda; Granier, André; Herbst, Mathias; Knohl, Alexander; Longdoz, Bernard; Mund, Martina; Nagy, Zoltan; Pintér, Krisztina; Rambal, Serge; Verbesselt, Jan; Verger, Aleixandre; Zeileis, Achim; Zhang, Chao; Peñuelas, Josep

    2016-01-01

    Severe droughts strongly impact photosynthesis (GPP), and satellite imagery has yet to demonstrate its ability to detect drought effects. Especially changes in vegetation functioning when vegetation state remains unaltered (no browning or defoliation) pose a challenge to satellite-derived indicators. We evaluated the performance of different satellite indicators to detect strong drought effects on GPP in a beech forest in France (Hesse), where vegetation state remained largely unaffected while GPP decreased substantially. We compared the results with three additional sites: a Mediterranean holm oak forest (Puéchabon), a temperate beech forest (Hainich), and a semi-arid grassland (Bugacpuszta). In Hesse, a three-year reduction in GPP following drought was detected only by the Enhanced Vegetation Index (EVI). The Photochemical Reflectance Index (PRI) also detected this drought effect, but only after normalization for absorbed light. In Puéchabon normalized PRI outperformed the other indicators, while the short-term drought effect in Hainich was not detected by any tested indicator. In contrast, most indicators, but not PRI, captured the drought effects in Bugacpuszta. Hence, PRI improved detection of drought effects on GPP in forests and we propose that PRI normalized for absorbed light is considered in future algorithms to estimate GPP from space. PMID:27301671

  14. Field Theory of Fundamental Interactions

    NASA Astrophysics Data System (ADS)

    Wang, Shouhong; Ma, Tian

    2017-01-01

    First, we present two basic principles, the principle of interaction dynamics (PID) and the principle of representation invariance (PRI). Intuitively, PID takes the variation of the action under energy-momentum conservation constraint. We show that the PID is the requirement of the presence of dark matter and dark energy, the Higgs field and the quark confinement. PRI requires that the SU(N) gauge theory be independent of representations of SU(N). It is clear that PRI is the logic requirement of any gauge theory. With PRI, we demonstrate that the coupling constants for the strong and the weak interactions are the main sources of these two interactions, reminiscent of the electric charge. Second, we emphasize that symmetry principles-the principle of general relativity and the principle of Lorentz invariance and gauge invariance-together with the simplicity of laws of nature, dictate the actions for the four fundamental interactions. Finally, we show that the PID and the PRI, together with the symmetry principles give rise to a unified field model for the fundamental interactions, which is consistent with current experimental observations and offers some new physical predictions. The research is supported in part by the National Science Foundation (NSF) grant DMS-1515024, and by the Office of Naval Research (ONR) grant N00014-15-1-2662.

  15. Seasonal variation in photosystem II efficiency and photochemical reflectance index of evergreen trees and perennial grasses growing at low and high elevations in subtropical Taiwan.

    PubMed

    Weng, Jen-Hsien; Liao, Tien-Szu; Hwang, Mon-Yuan; Chung, Chi-Ch; Lin, Chung-Ping; Chu, Chung-Hei

    2006-08-01

    Three pines species, three evergreen broadleaf trees, one C(3) and two C(4) perennial grasses of subtropical Taiwan were studied to elucidate the correlation between photosystem II (PSII) efficiency and photochemical reflectance index (PRI = (R(531) - R(570))/(R(531) + R(570))). Measurements were made at two sites differing in altitude (800 and 2600 m) over several growing seasons. At high elevation, potential PSII efficiency, measured by chlorophyll fluorescence (the ratio of variable to maximal fluorescence; F(v)/F(m)) at predawn, decreased with decreasing air temperature and varied greatly among species. At the lowest air temperature (-3 degrees C) studied, variation in F(v)/F(m) among species ranged from 0.33 to 0.72. In contrast, at low elevation where air temperature was moderate, seasonal variation in F(v)/F(m) was small in all of the study species. When species, elevation and season data were pooled, despite the high variation in F(v)/F(m) among species, a good correlation between F(v)/F(m) and PRI was observed. When compared at the same value of PRI, F(v)/F(m) of evergreen trees was higher than that of perennial grasses; however, when the minimum temperature on the measurement day was below 0 degrees C, F(v)/F(m) was underestimated relative to PRI. We conclude that PRI could be used as a remote indicator of photosynthetic function when air temperature is above 0 degrees C.

  16. The Menu of Features that Define Primary MicroRNAs and Enable De Novo Design of MicroRNA Genes.

    PubMed

    Fang, Wenwen; Bartel, David P

    2015-10-01

    MicroRNAs (miRNAs) are small regulatory RNAs processed from stem-loop regions of primary transcripts (pri-miRNAs), with the choice of stem loops for initial processing largely determining what becomes a miRNA. To identify sequence and structural features influencing this choice, we determined cleavage efficiencies of >50,000 variants of three human pri-miRNAs, focusing on the regions intractable to previous high-throughput analyses. Our analyses revealed a mismatched motif in the basal stem region, a preference for maintaining or improving base pairing throughout the remainder of the stem, and a narrow stem-length preference of 35 ± 1 base pairs. Incorporating these features with previously identified features, including three primary-sequence motifs, yielded a unifying model defining mammalian pri-miRNAs in which motifs help orient processing and increase efficiency, with the presence of more motifs compensating for structural defects. This model enables generation of artificial pri-miRNAs, designed de novo, without reference to any natural sequence yet processed more efficiently than natural pri-miRNAs.

  17. Remote sensing of assimilating branch light use efficiency using the photochemical reflectance index in Haloxylon ammodendron forest

    NASA Astrophysics Data System (ADS)

    Nyongesah, Maina John; Quan, Wang; Lu, Xu

    2016-04-01

    Five healthy Haloxylon ammodendron trees were randomly selected to monitor the photochemical reflectance index (PRI) and its relation to light use efficiency (LUE) in shaded and sunlit assimilating branches. Linear regression was performed where the results revealed that LUE decreased with seasonal courses with vivid midday depression regardless of light variation within canopies. PRI and LUE decoupled in early spring when the foliage was deeply downregulated, with high correlation (R2=0.8, p<0.001) during most parts of the year. Measured and estimated LUE were highly correlated for the July to September dataset (R2=0.73, p<0.001) compared to May to June datasets (R2=0.35, p<0.001). The estimated LUE for young assimilating branches could be obtained with a high RMSE of 0.01, compared to mature branches with an RMSE of 0.003. The measured LUE values were ˜20% higher than estimated LUE during the period from May to June, and values were slightly lower at the end of the growing season. This was attributed to differences in the physiological and biochemical mechanisms controlling the seasonal dynamics of PRI. Therefore, PRI is the best estimator of LUE when age-related changes and canopy light partitioning are considered in assimilating organs. Combined use of PRI with pigments could improve the remote evaluation of LUE.

  18. Dynamic change and derivation process of FC and DFC through G1, S and G2 phases in HeLa cells.

    PubMed

    Wang, Fengcai; Shang, Guangbin; Hao, Shui; Jiao, Mingda

    2006-10-01

    In order to get a deeper understanding of the relationship between nucleolus structure and its function, the dynamic change and derivation of FC (fibrillar center) and DFC (dense fibrillar component) through interphase were investigated in HeLa cells synchronized at the ultrastructural level. The results showed that there was a process of FC and DFC derivation in the nucleolus of HeLa cells during interphase. In G1 phase there were a few big FCs in the nucleolus of the HeLa cell. In S phase DFC around the FC got thickened and the configuration of the DFC changed. A lot of tiny FCs were derived from parts of the thickened DFC. We called the FC and DFC formed in G1 phase as primary FC (pri-FC) and primary DFC (pri-DFC) and the FC and DFC derived from the thickened pri-DFC as secondary FC (sec-FC) and secondary DFC (sec-DFC). In G2 phase sec-FC and sec-DFC were gradually separated from pri-DFC and scattered evenly in the nucleolus. Few large pri-FCs coexisted with numerous tiny sec-FCs in the nucleolus of HeLa cells in G2 phase. Based on the results of our observation, we suggest here a model of the dynamic change and the process of derivation of FC and DFC through interphase.

  19. Risk Management in Magnetic Resonance: Failure Mode, Effects, and Criticality Analysis

    PubMed Central

    Granata, Vincenza; Filice, Salvatore; Raiano, Nicola; Amato, Daniela Maria; Zirpoli, Maria; di Finizio, Alessandro; Sansone, Mario; Russo, Anna; Covelli, Eugenio Maria; Pedicini, Tonino; Triassi, Maria

    2013-01-01

    The aim of the study was to perform a risk management procedure in “Magnetic Resonance Examination” process in order to identify the critical phases and sources of radiological errors and to identify potential improvement projects including procedures, tests, and checks to reduce the error occurrence risk. In this study we used the proactive analysis “Failure Mode Effects Criticality Analysis,” a qualitative and quantitative risk management procedure; has calculated Priority Risk Index (PRI) for each activity of the process; have identified, on the PRI basis, the most critical activities and, for them, have defined improvement projects; and have recalculated the PRI after implementation of improvement projects for each activity. Time stop and audits are performed in order to control the new procedures. The results showed that the most critical tasks of “Magnetic Resonance Examination” process were the reception of the patient, the patient schedule drafting, the closing examination, and the organization of activities. Four improvement projects have been defined and executed. PRI evaluation after improvement projects implementation has shown that the risk decreased significantly following the implementation of procedures and controls defined in improvement projects, resulting in a reduction of the PRI between 43% and 100%. PMID:24171173

  20. The photochemical reflectance index provides an optical indicator of spring photosynthetic activation in evergreen conifers.

    PubMed

    Wong, Christopher Y S; Gamon, John A

    2015-04-01

    In evergreens, the seasonal down-regulation and reactivation of photosynthesis is largely invisible and difficult to assess with remote sensing. This invisible phenology may be changing as a result of climate change. To better understand the mechanism and timing of these hidden physiological transitions, we explored several assays and optical indicators of spring photosynthetic activation in conifers exposed to a boreal climate. The photochemical reflectance index (PRI), chlorophyll fluorescence, and leaf pigments for evergreen conifer seedlings were monitored over 1 yr of a boreal climate with the addition of gas exchange during the spring. PRI, electron transport rate, pigment levels, light-use efficiency and photosynthesis all exhibited striking seasonal changes, with varying kinetics and strengths of correlation, which were used to evaluate the mechanisms and timing of spring activation. PRI and pigment pools were closely timed with photosynthetic reactivation measured by gas exchange. The PRI provided a clear optical indicator of spring photosynthetic activation that was detectable at leaf and stand scales in conifers. We propose that PRI might provide a useful metric of effective growing season length amenable to remote sensing and could improve remote-sensing-driven models of carbon uptake in evergreen ecosystems.

  1. Global Prioritizing Disease Candidate lncRNAs via a Multi-level Composite Network

    PubMed Central

    Yao, Qianlan; Wu, Leilei; Li, Jia; Yang, Li guang; Sun, Yidi; Li, Zhen; He, Sheng; Feng, Fangyoumin; Li, Hong; Li, Yixue

    2017-01-01

    LncRNAs play pivotal roles in many important biological processes, but research on the functions of lncRNAs in human disease is still in its infancy. Therefore, it is urgent to prioritize lncRNAs that are potentially associated with diseases. In this work, we developed a novel algorithm, LncPriCNet, that uses a multi-level composite network to prioritize candidate lncRNAs associated with diseases. By integrating genes, lncRNAs, phenotypes and their associations, LncPriCNet achieves an overall performance superior to that of previous methods, with high AUC values of up to 0.93. Notably, LncPriCNet still performs well when information on known disease lncRNAs is lacking. When applied to breast cancer, LncPriCNet identified known breast cancer-related lncRNAs, revealed novel lncRNA candidates and inferred their functions via pathway analysis. We further constructed the human disease-lncRNA landscape, revealed the modularity of the disease-lncRNA network and identified several lncRNA hotspots. In summary, LncPriCNet is a useful tool for prioritizing disease-related lncRNAs and may facilitate understanding of the molecular mechanisms of human disease at the lncRNA level. PMID:28051121

  2. Remotely-sensed detection of effects of extreme droughts on gross primary production

    NASA Astrophysics Data System (ADS)

    Vicca, Sara; Balzarolo, Manuela; Filella, Iolanda; Granier, André; Herbst, Mathias; Knohl, Alexander; Longdoz, Bernard; Mund, Martina; Nagy, Zoltan; Pintér, Krisztina; Rambal, Serge; Verbesselt, Jan; Verger, Aleixandre; Zeileis, Achim; Zhang, Chao; Peñuelas, Josep

    2016-06-01

    Severe droughts strongly impact photosynthesis (GPP), and satellite imagery has yet to demonstrate its ability to detect drought effects. Especially changes in vegetation functioning when vegetation state remains unaltered (no browning or defoliation) pose a challenge to satellite-derived indicators. We evaluated the performance of different satellite indicators to detect strong drought effects on GPP in a beech forest in France (Hesse), where vegetation state remained largely unaffected while GPP decreased substantially. We compared the results with three additional sites: a Mediterranean holm oak forest (Puéchabon), a temperate beech forest (Hainich), and a semi-arid grassland (Bugacpuszta). In Hesse, a three-year reduction in GPP following drought was detected only by the Enhanced Vegetation Index (EVI). The Photochemical Reflectance Index (PRI) also detected this drought effect, but only after normalization for absorbed light. In Puéchabon normalized PRI outperformed the other indicators, while the short-term drought effect in Hainich was not detected by any tested indicator. In contrast, most indicators, but not PRI, captured the drought effects in Bugacpuszta. Hence, PRI improved detection of drought effects on GPP in forests and we propose that PRI normalized for absorbed light is considered in future algorithms to estimate GPP from space.

  3. Tracking Diurnal Variation in Photosynthetic Down-Regulation Using Low Cost Spectroscopic Instrumentation

    PubMed Central

    van Leeuwen, Martin; Kremens, Robert L.; van Aardt, Jan

    2015-01-01

    Photosynthetic light-use efficiency (LUE) has gained wide interest as an input to modeling forest gross primary productivity (GPP). The photochemical reflectance index (PRI) has been identified as a principle means to inform LUE-based models, using airborne and satellite-based observations of canopy reflectance. More recently, low-cost electronics have become available with the potential to provide for dense in situ time-series measurements of PRI. A recent design makes use of interference filters to record light transmission within narrow wavebands. Uncertainty remains as to the dynamic range of these sensors and performance under low light conditions, the placement of the reference band, and methodology for reflectance calibration. This paper presents a low-cost sensor design and is tested in a laboratory set-up, as well in the field. The results demonstrate an excellent performance against a calibration standard (R2 = 0.9999) and at low light conditions. Radiance measurements over vegetation demonstrate a reversible reduction in green reflectance that was, however, seen in both the reference and signal wavebands. Time-series field measurements of PRI in a Douglas-fir canopy showed a weak correlation with eddy-covariance-derived LUE and a significant decline in PRI over the season. Effects of light quality, bidirectional scattering effects, and possible sensor artifacts on PRI are discussed. PMID:25951342

  4. The viability of the Parenting Representations Interview for assessing and measuring change in parents of adolescents.

    PubMed

    Scharf, Miri; Mayseless, Ofra; Kivenson-Baron, Inbal

    2015-01-01

    Parents' representations include parents' views of their adolescent, of their own parenting and of the parent-adolescent relationship. Two longitudinal studies of parents and their adolescent sons and daughters support the validity of scales coding mothers in the Parenting Representations Interview-Adolescence (PRI-A). The studies, conducted in Israel during the transition from home to military service, demonstrated that three dimensions derived from the PRI-A: positive representations of adolescents, negative emotionality and inadequate boundaries were associated with adolescents' AAI variables, relatedness-autonomy behaviors with mothers, and with other indicators, such as adolescents' wellbeing, romantic intimacy and individuation. Examining parenting representations could help practitioners pinpoint targets for intervention and evaluate the changes that families go through during psychotherapy, as well as the therapeutic process and its outcomes. The findings support the viability of the PRI for use in attachment based interventions for adolescents.

  5. Experimental Tests of the Light-Use Efficiency Model in Alfalfa

    NASA Astrophysics Data System (ADS)

    Castro, Saulo Manuel

    This study explored ways of integrating optical and flux measurements in the context of the Light Use Efficiency (LUE) model in an alfalfa ( Medicago sativa) field. Narrow-band spectrometers and low cost two-band radiometers provided alternate ways to measure NDVI and estimate the APAR term of the LUE model. The high temporal resolution of two-band sensors system accurately tracked seasonal carbon flux dynamics (R 2 = 0.96) demonstrating the value of automated, low cost approaches to monitoring NDVI and canopy light absorption, which was the dominant term in the LUE model for this agricultural field. At the seasonal scale PRI correlations with LUE varied with the LUE formulation, and suggested that seasonal PRI patterns were primarily driven by canopy structure changes. However, at the diurnal level, DeltaPRI correlated with changing efficiency. Combined optical and flux sampling can help partition flux data, gap-fill data, and add insights into the controls of carbon fluxes.

  6. Tracking seasonal changes of leaf and canopy light use efficiency in a Phlomis fruticosa Mediterranean ecosystem using field measurements and multi-angular satellite hyperspectral imagery

    NASA Astrophysics Data System (ADS)

    Stagakis, Stavros; Markos, Nikos; Sykioti, Olga; Kyparissis, Aris

    2014-11-01

    Numerous normalized difference spectral indices (NDSIs) derived from leaf measurements and CHRIS/PROBA hyperspectral and multi-angular satellite images were examined for their capacity to track seasonal variations of leaf (εleaf) and canopy (εcan) light use efficiency of a Mediterranean phryganic ecosystem. A series of seasonal field ecophysiological measurements, i.e. leaf area index (LAI), leaf photosynthesis and leaf reflectance, were conducted on the Phlomis fruticosa shrubs at the days of CHRIS acquisitions over the study site. Leaf scale analysis confirmed background theory on the relationship of the photochemical reflectance index (PRI) with εleaf and provided a detailed view of the wavelengths that can be used in PRI formulation for the specific species. In canopy scale analysis, PRI and some alternative formulations of this index based on CHRIS bands, presented the most significant relationships with εcan, indicating that this index preserves its efficiency in satellite observations for the specific ecosystem. Additionally, spectral indices related to chlorophyll and water content were found to present good relationships with εcan. Taking into account the functional relationship between εcan and chlorophyll content, a combination of the xanthophyll de-epoxidation band (531 nm) with 701 nm CHRIS band in a NDSI is suggested as an alternative to the original PRI formulation that could improve seasonal εcan estimations. The satellite observation geometry effects on the determination of εcan were not very intense for the studied ecosystem. However, the most effective viewing direction was proved to be the backward scattering, while zenith observations were the least efficient for the specific ecosystem, most probably due to increased background effects. Even though the sensitivity of the original PRI formulation to εcan was reduced in forward scattering viewing directions, when 531 nm xanthophyll de-epoxidation band was replaced with higher wavelength

  7. Prevalence of CYP2C19 alleles, pharmacokinetic and pharmacodynamic variation of clopidogrel and prasugrel in Bangladeshi population.

    PubMed

    Bin Sayeed, Muhammad Shahdaat; Hasan Apu, Mohd Nazmul; Munir, Maliha Tabassum; Ahmed, Maizbha Uddin; Islam, Mohammad Safiqul; Haq, M Maksumul; Ahsan, Chowdhury H; Rashid, M A; Shin, Jae Gook; Hasnat, Abul

    2015-05-01

    The extent to which cytochrome P450 (CYP) 2C19 genotype influences the effectiveness of clopidogrel remains uncertain due to considerable heterogeneity between studies. We used the polymerase chain reaction restriction fragment length polymorphism (PCR-RFLP) method for genotyping loss of function (LOF) allele, CYP2C19*2 and gain of function (GOF) allele, CYP2C19*17 in 163 patients undergoing PCI and 165 healthy volunteers from an ethnically distinctive Bangladeshi population. Thirty-eight patients took prasugrel and 125 patients took clopidogrel among whom 30 patients had their clopidogrel active metabolites (CAM) determined by LC-MS/MS 1-1.5 h after clopidogrel intake. All patients who underwent PCI had their P2Y12 per cent inhibition (PRI) measured by VerifyNow System. The impact of different genotypes on CAM and PRI were also determined. We did not find significant variation of CYP2C19*2 (P > 0.05) and CYP2C9*17 (P > 0.05) alleles among healthy volunteers and patients. CAM concentration as well as PRI by clopidogrel varied significantly (P < 0.05) based on genotypic variation of CYP2C19*2 and CYP2C19*17 individually. Such influence was not observed in case of prasugrel. Genotypic variation did not impact PRI but as a whole PRI by prasugrel was better than that of clopidogrel (P < 0.05). Due to presence of both of alleles the effect on PRI by clopidogrel could not be predicted, effectively indicating possible involvement of other factors. Genotype guided clopidogrel dose adjustment would be beneficial and therefore we propose mandatory genotyping before clopidogrel dosing. Prasugrel proved to be less affected by genotypic variability, but due to lack of sufficient long-term toxicity data, caution would be adopted before substituting clopidogrel.

  8. Evaluation of the photochemical reflectance index in AVIRIS imagery

    NASA Technical Reports Server (NTRS)

    Gamon, John A.; Roberts, Dar A.; Green, Robert O.

    1995-01-01

    In this paper, we evaluate the potential for extracting the 'photochemical reflectance index' (PRI; previously called the 'physiological reflectance index') from AVIRIS data. This index, which is derived from narrow-band reflectance at 531 and 570 nm, has proven to be a useful indicator of photosynthetic function at the leaf and canopy scales. At the leaf level, PRI varies with photosynthetic capacity, radiation-use efficiency, and vegetation type (unpublished data). This finding is consistent with the hypothesis that vegetation types exhibiting chronically reduced photosynthesis during periods of stress (e.g. drought-tolerant evergreens) invest proportionally more in photoprotective processes than vegetation with high photosynthetic capacity (e.g. crops or deciduous perennials). Vertical transects in tropical and boreal forest canopies have indicated declines in PRI associated with downregulation of photosynthesis at the canopy tops under sunny, dry midday conditions (unpublished data). This reduced PRI in upper canopy levels provides a further basis for examining this signal with the 'view from above' afforded by aircraft overflights. Although many factors could confound interpretation of a subtle physiological signal at the landscape scale, we conducted a preliminary examination of PRI extracted from existing, AVIRIS imagery of Stanford University's Jasper Ridge Biological Preserve obtained on the June 2nd, 1992, overflight. The goal was to use the hyperspectral capabilities of AVIRIS to evaluate the potential of this index for obtaining useful physiological data at the landscape scale. The expectation based on leaf- and canopy-level studies was that regions containing vegetation of reduced photosynthetic capacity (e.g. chaparral or evergreen woodland) would exhibit lower PRI values than regions of high capacity (e.g. deciduous woodland).

  9. Direct observations of ecosystem light use efficiency from MAIAC/MODIS

    NASA Astrophysics Data System (ADS)

    Hall, F. G.; Hilker, T.; Lyapustin, A.; Wang, Y.; Coops, N.; Drolet, G.

    2009-12-01

    The fraction of photosynthetically active radiation (FPAR) incident upon and absorbed by vegetated ecosystems is a standard MODIS product. From this and satellite observations of incident PAR flux, ecosystem photosynthetic capacity can be measured remotely, but not ecosystem photosynthetic rate. The missing link is remotely sensed observations of ecosystem light-use efficiency (LUE) (the efficiency with which ecosystems convert absorbed PAR into carbon), which is modulated by plant physiology in response to rapidly changing extant environmental conditions. LUE is currently estimated from models that attempt to relate plant physiological response to their environment (soil moisture, fertility etc); however accuracies are limited by the uncertainty of the required inputs at landscape scales - primarily precipitation and soil hydrological characteristics. To rectify this situation, a number of recent studies were directed at measuring ecosystem LUE directly from MODIS using a photochemical reflectance index (PRI) - based on the reflectance measurements from MODIS bands 11 and 12 (~531 and ~550 nm). Results however have shown that quantifying the relationship between MODIS PRI and ecosystem LUE remains challenging. In addition, atmospherically induced aerosol variability confounds the subtle PRI signal. Here, we introduce and evaluate a new approach (MAIAC) that minimizes cloud interference, and aerosol and surface bidirectional reflectance effects on PRI. Using tower measured LUE, we evaluate our approach and demonstrate a strong relationship (r2=0.74, p<0.01) between tower based observations of both PRI and LUE and those from atmospherically corrected MODIS data; these correlations remained robust throughout the vegetation period of 2006. Swath observations yielded better results than gridded data (r2=0.58, p<0.01) both of which included forward and backscatter observations. As expected from theoretical considerations, MODIS PRI values were strongly related to canopy

  10. Relation between clopidogrel active metabolite levels and different platelet aggregation methods in patients receiving clopidogrel and aspirin.

    PubMed

    Liang, Yan; Johnston, Marilyn; Hirsh, Jack; Pare, Guillaume; Li, Chunjian; Mehta, Shamir; Teo, Koon K; Sloane, Debi; Yi, Qilong; Zhu, Jun; Eikelboom, John W

    2012-11-01

    Clopidogrel is a prodrug that undergoes bioconversion via cytochrome P450 system to form an active metabolite (AM) that binds to the platelet ADP receptor. The antiplatelet effect of clopidogrel is commonly assessed by measuring the aggregatory response to 5 μM ADP by light transmission aggregation (LTA) or multiple electrode aggregometry (MEA) or by the vasodilator-stimulated phosphoprotein platelet reactivity index (VASP-PRI). To determine which of these three tests of platelet ADP receptor pathway inhibition most closely correlates with clopidogrel AM levels. We analyzed blood samples from 82 patients with coronary artery disease who were randomized to receive double-dose or standard dose clopidogrel for 2 weeks. We measured peak clopidogrel AM levels, platelet aggregation in response to ADP and VASP-PRI on days 1, and repeated all the measures on days 7 and 14. Linear regression analysis was used to examine the correlation between clopidogrel AM and LTA, MEA and VASP-PRI. Bland-Altman plots were used to explore the agreement between tests of the antiplatelet effects of clopidogrel. Clopidogrel AM on day 1 correlated most closely with VASP-PRI (r = -0.5767) and demonstrated weaker correlations with LTA (r = -0.4656) and MEA (r = -0.3384) (all p < 0.01). Intra-class correlation (ICC) between VASP-PRI and LTA was 0.6446; VASP-PRI and MEA was 0.4720; and LTA and MEA was 0.4693. Similar results were obtained on days 7 and 14. Commonly used pharmacodynamic measures of clopidogrel response are only moderately correlated with clopidogrel AM levels and may not be suitable to measure the adequacy of clopidogrel therapy.

  11. Comparative effects of deficit irrigation and alternate partial root-zone irrigation on xylem pH, ABA and ionic concentrations in tomatoes.

    PubMed

    Wang, Yaosheng; Liu, Fulai; Jensen, Christian Richardt

    2012-03-01

    Comparative effects of partial root-zone irrigation (PRI) and deficit irrigation (DI) on xylem pH, ABA, and ionic concentrations of tomato (Lycopersicon esculentum L.) plants were investigated in two split-root pot experiments. Results showed that PRI plants had similar or significantly higher xylem pH, which was increased by 0.2 units relative to DI plants. Nitrate and total ionic concentrations (cations+anions), and the proportion of cations influenced xylem pH such that xylem pH increases as nitrate and total ionic concentrations decrease, and the proportion of cations increases. In most cases, the xylem ABA concentration was similar for PRI and DI plants, and a clear association between increases in xylem pH with increasing xylem ABA concentration was only found when the soil water content was relatively low. The concentrations of anions, cations, and the sum of anions and cations in PRI were higher than in the DI treatment when soil water content was relatively high in the wetted soil compartment. However, when water content in both soil compartments of the PRI pots were very low before the next irrigation, the acquisition of nutrients by roots was reduced, resulting in lower concentrations of anions and cations in the PRI than in the DI treatment. It is therefore essential that the soil water content in the wet zone should be maintained relatively high while that in the drying soil zone should not be very low, both conditions are crucial to maintain high soil and plant water status while sustaining ABA signalling of the plants.

  12. Utilizing In Situ Directional Hyperspectral Measurements to Validate Bio-Indicator Simulations for a Corn Crop Canopy

    NASA Technical Reports Server (NTRS)

    Cheng, Yen-Ben; Middleton, Elizabeth M.; Huemmrich, Karl F.; Zhang, Qingyuan; Campbell, Petya K. E.; Corp, Lawrence A.; Russ, Andrew L.; Kustas, William P.

    2010-01-01

    Two radiative transfer canopy models, SAIL and the two-layer Markov-Chain Canopy Reflectance Model (MCRM), were coupled with in situ leaf optical properties to simulate canopy-level spectral band ratio vegetation indices with the focus on the photochemical reflectance index in a cornfield. In situ hyperspectral measurements were made at both leaf and canopy levels. Leaf optical properties were obtained from both sunlit and shaded leaves. Canopy reflectance was acquired for eight different relative azimuth angles (psi) at three different view zenith angles (Theta (sub v)), and later used to validate model outputs. Field observations of photochemical reflectance index (PRI) for sunlit leaves exhibited lower values than shaded leaves, indicating higher light stress. Canopy PRI expressed obvious sensitivity to viewing geometry, as a function of both Theta (sub v) and psi . Overall, simulations from MCRM exhibited better agreements with in situ values than SAIL. When using only sunlit leaves as input, the MCRM-simulated PRI values showed satisfactory correlation and RMSE, as compared to in situ values. However, the performance of the MCRM model was significantly improved after defining a lower canopy layer comprised of shaded leaves beneath the upper sunlit leaf layer. Four other widely used band ratio vegetation indices were also studied and compared with the PRI results. MCRM simulations were able to generate satisfactory simulations for these other four indices when using only sunlit leaves as input; but unlike PRI, adding shaded leaves did not improve the performance of MCRM. These results support the hypothesis that the PRI is sensitive to physiological dynamics while the others detect static factors related to canopy structure. Sensitivity analysis was performed on MCRM in order to better understand the effects of structure related parameters on the PRI simulations. Leaf area index (LAI) showed the most significant impact on MCRM-simulated PRI among the parameters

  13. Review of methods for removing cast gold restorations.

    PubMed

    Oliva, R A

    1979-11-01

    Most techniques and devices described for crown removal, in one way or another, destroy the integrity of today's precision cast crowns. There were only three techniques described that do not require drilling a hole, cutting a notch or slot, clamping with claws or jaws, prying with instruments, or grasping with forceps and pliers. These are the copper band filled with cement, the coping of cold-curing acrylic resin, and the Richwil crown remover. The safest and least traumatic of all crown removal devices and techniques is to cut a slot and pry the crown loose. Although the crown is destroyed, damage to the tooth is avoided.

  14. Mechanical Model of Steel-concrete Composite Joint under Sagging Bending Moment

    NASA Astrophysics Data System (ADS)

    Pisarek, Zdzisław

    2012-06-01

    In buildings with steel-concrete composite floors, joints are designed to transmit mainly hogging bending moment. In case of the large horizontal loads due to wind, earthquake or accidental events, sagging bending moments in a joint can also occur. Additionally, large deformations of the structure cause tying and prying effects. In the paper, a mechanical model based on "component method" for evaluation of characteristics of the composite joint is presented. The influence of tying and prying actions on distribution of the internal forces in a joint is also analyzed. The procedure for calculation of the characteristics of the composite joint with bolted endplate connection is elaborated too.

  15. The Photochemical Reflectance Index from Directional Cornfield Reflectances: Observations and Simulations

    NASA Technical Reports Server (NTRS)

    Cheng, Yen-Ben; Middleton, Elizabeth M.; Zhang, Qingyuan; Corp, Lawrence A.; Dandois, Jonathan; Kustas, William P.

    2012-01-01

    The two-layer Markov chain Analytical Canopy Reflectance Model (ACRM) was linked with in situ hyperspectral leaf optical properties to simulate the Photochemical Reflectance Index (PRI) for a corn crop canopy at three different growth stages. This is an extended study after a successful demonstration of PRI simulations for a cornfield previously conducted at an early vegetative growth stage. Consistent with previous in situ studies, sunlit leaves exhibited lower PRI values than shaded leaves. Since sunlit (shaded) foliage dominates the canopy in the reflectance hotspot (coldspot), the canopy PRI derived from field hyperspectral observations displayed sensitivity to both view zenith angle and relative azimuth angle at all growth stages. Consequently, sunlit and shaded canopy sectors were most differentiated when viewed along the azimuth matching the solar principal plane. These directional PRI responses associated with sunlit/shaded foliage were successfully reproduced by the ACRM. As before, the simulated PRI values from the current study were closer to in situ values when both sunlit and shaded leaves were utilized as model input data in a two-layer mode, instead of a one-layer mode with sunlit leaves only. Model performance as judged by correlation between in situ and simulated values was strongest for the mature corn crop (r = 0.87, RMSE = 0.0048), followed by the early vegetative stage (r = 0.78; RMSE = 0.0051) and the early senescent stage (r = 0.65; RMSE = 0.0104). Since the benefit of including shaded leaves in the scheme varied across different growth stages, a further analysis was conducted to investigate how variable fractions of sunlit/shaded leaves affect the canopy PRI values expected for a cornfield, with implications for 20 remote sensing monitoring options. Simulations of the sunlit to shaded canopy ratio near 50/50 +/- 10 (e.g., 60/40) matching field observations at all growth stages were examined. Our results suggest in the importance of the

  16. National Program for Inspection of Non-Federal Dams. Mill Pond Dam (MA 00161) Danvers River Basin, Danvers, Massachusetts. Phase I Inspection Report.

    DTIC Science & Technology

    1980-12-01

    receiving a flash flood warning, either from the NationalL Weather Service or the Town’s pri- vate weather service, the Town re- moves flashboards to lower...which is about 1 to 1.5 ft. higher than normally maintained during late fall, winter and spring months or at times when flash flood warnings are...following conditions: a. Upon receiving a flash flood warning, either from the National Weather Service or the Town’s pri- vate weather service, the

  17. EnABLing microprocessor for apoptosis.

    PubMed

    Tu, Chi-Chiang; Wang, Jean Y J

    The Microprocessor complex consisting of DROSHA (a type III ribonuclease) and DGCR8 (DiGeorge syndrome critical region gene 8-encoded RNA binding protein) recognizes and cleaves the precursor microRNA hairpin (pre-miRNA) from the primary microRNA transcript (pri-miRNA). The Abelson tyrosine kinase 1 (ABL) phosphorylates DGCR8 to stimulate the cleavage of a subset of pro-apoptotic pri-miRNAs, thus expanding the nuclear functions of ABL to include regulation of RNA processing.

  18. Coherent radar observations of a storm sudden commencement having a preliminary reverse impulse

    SciTech Connect

    McDiarmid, D.R.; Nielsen, E. )

    1987-01-01

    Observations of the February 4, 1983, storm sudden commencement (ssc) by the STARE and SABRE radar systems are presented. The observing stations were in the dusk sector, where the ssc was accompanied by a preliminary reverse impulse (PRI). The radar data show the PRI to be a consequence of the ssc compression wave producing an initial antisunward flow. The polarization of the ssc electric field in the ionosphere is seen to have both longitudinal and latitudinal structure. The observations are discussed in terms of the propagation of the ssc disturbance throughout the magnetosphere.

  19. Tower Based Measurements of Bio-indicators Over the Growing Season at a Mature Douglas-fir Coniferous Forest

    NASA Astrophysics Data System (ADS)

    Cheng, Y.; Hilker, T.; Middleton, E. M.; Coops, N. C.; Black, T. A.; Krishnan, P.

    2007-12-01

    The use of remotely sensed measurements collected by satellite, aircraft, and ground instruments to improve our understanding of ecological and hydrological processes were successfully demonstrated through the First International Satellite Land Surface Climatology (ISLSCP) Field Experiment [FIFE] and the BOReal Ecosystem- Atmosphere Study [BOREAS]. Following the concept of FIFE and BOREAS, we analyzed hyperspectral reflectance measurements collected at a coastal forest in British Columbia, Canada through the 2006 growing season. Diurnal and seasonal dynamics of the Photochemical Reflectance Index (PRI), a normalized difference spectral band-ratio index based on the xanthophyll signal at 531 nm which expresses protective responses to high light stress, were studied. This index has been shown to correlate with photosynthetic light use efficiency (LUE), an essential variable to model carbon uptake efficiency by plants. The measurements were collected from an automated system mounted on a flux tower under different sun and view geometries and atmospheric conditions through the 2006 growing season. Canopy structure was modeled using Light Detection and Ranging (LiDAR) technology, from which the sunlit and shaded canopy fractions were calculated as a function of incoming photosynthetically active radiation (PAR). These automated directional observations allowed us to: 1) investigate diurnal and seasonal changes of the PRI under different sky conditions; 2) compare the PRI with tower-based micro-meteorological measurements; and 3) separately investigate the PRI dynamics for sunlit and shaded partitions of the canopy which differ in response to their light environments. The data were categorized into six different groups based on two sky conditions (sunny and cloudy) and three illumination conditions (sunlit, shaded and intermediate). PRI showed a clear correlation with the LiDAR-based shadow fraction estimates. In April, the commencement of the growing season, clear

  20. Factors that Affect the Physical Science Career Interest of Female Students: Testing Five Common Hypotheses

    ERIC Educational Resources Information Center

    Hazari, Zahra; Potvin, Geoff; Lock, Robynne M.; Lung, Florin; Sonnert, Gerhard; Sadler, Philip M.

    2013-01-01

    There are many hypotheses regarding factors that may encourage female students to pursue careers in the physical sciences. Using multivariate matching methods on national data drawn from the Persistence Research in Science and Engineering (PRiSE) project ("n" = 7505), we test the following five commonly held beliefs regarding what…

  1. Evaluating the Impact of Drug Trafficking Organizations on the Stability of the Mexican State

    DTIC Science & Technology

    2010-06-11

    Executive Office of the President PAN Partido Accion National, National Action Party, (a Mexican political party) PRI Partido Revolucionario......Border Violence Situation: Strategic Campaign Planning in Action,” submitted in December 2009, Air Force Major Francis M. Benedict analyzed the issues

  2. Development of one-step Loop-Mediated Isothermal Amplification (LAMP) for the detection of norovirus in oysters

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The aim of this study was to develop a simple and rapid technique for detecting human norovirus (NoV). The loop-mediated isothermal amplification (LAMP) technique was evaluated and found to be sensitive, highly specific, and useful for routine oyster testing. Reverse transcription-LAMP (RT-LAMP) pri...

  3. Evaluation of Ethanol Extracted Surface Antigens of Mycobacterium bovis for Diagnosis of Bovine Tuberculosis in Livestock Cattle and Wild Deer

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Background: Bovine tuberculosis (TB), caused by Mycobacterium bovis, is a zoonotic disease resulting in chronic granulomatous lymphadenitis, particularly in the lungs and lung-associated lymph nodes. Although bovine TB has been nearly eradicated in many developed countries, the disease persists pri...

  4. Research and Teaching. The Science Identity of College Students: Exploring the Intersection of Gender, Race, and Ethnicity

    ERIC Educational Resources Information Center

    Hazari, Zahra; Sadler, Philip M.; Sonnert, Gerhard

    2013-01-01

    This study explores students' self-perceptions across science subjects (biology, chemistry, and physics) by gender and underrepresented minority group membership. The data are drawn from the Persistence Research in Science and Engineering (PRiSE) project, which surveyed 7,505 students (enrolled in college English courses required for all majors)…

  5. Bioassessment Tools for Stony Corals: Field Testing of Monitoring Protocols in the US Virgin Islands (St. Croix)

    EPA Science Inventory

    Survey protocols for assessing coral reef condition were field tested at 61 reef stations in St. Croix, US Virgin Islands (USVI) during 2006. Three observations for stony corals were recorded: species, size, and percent live tissue. Stony corals were selected because they are pri...

  6. ADA1: An ADA Subset Compiler for the AFIT Syntax Directed Programming Environment.

    DTIC Science & Technology

    1983-12-05

    abort statement with an appropriate error message. To allow return to the "operating system" the interpreter was modified to push an extra 0 onto the... arguement must be a boolean expression. C/ jnt not~pri(node) ant node; int typenext; if ((type a primary(next s gonnode))) !a TYPE-DO0) if (error(next

  7. The United States and Colombia: Untying the Gordian Knot

    DTIC Science & Technology

    2000-03-01

    civil war known as La Violencia . At the beginning of his Foreign Service career, Ambassador Passage was a pacification program analyst at the U.S...Revolucionario (EPR) have an inviting and popular target in the corrupt and corpulent Partido Revolucionario Institucional (PRI), even though the latter is now at

  8. Mexico: Democracy and the Future

    ERIC Educational Resources Information Center

    Bruhn, Kathleen

    2009-01-01

    During most of the twentieth century, Mexico was governed by one of the longest-ruling authoritarian parties in the contemporary world. Even as most Latin American countries democratized in the 1980s, Mexico remained under the control of the Institutional Revolutionary Party (PRI). It was not until the 2000 presidential election that a two-party…

  9. US EPA, Pesticide Product Label, , 10/13/1993

    EPA Pesticide Factsheets

    2011-04-21

    ... Pr.I ... ", c;l.tIo'IiAI aAIl '_ .. ill .... M· far ... 1 I' ,1,.,.F IIF.II IIi t. IIIIhiA" If III..... refltl v. laMa".iMI.11 ,1.thiAI aA-' 'A'.'" 110" i",,,,lIi.,... ttI:l lat, IAII U'I'''' wet", •• , ...

  10. Species Profiles: Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (South Florida): Black, Red and Nassau Groupers

    DTIC Science & Technology

    1989-08-01

    10. 95 pp. Manday, D.G., and M.J. Fernandez. Munro, J.L., V.C. Gaut, R. Thompson, 1966. Desarrollo embrionario y pri- and P.H. Reeson. 1973. The...Baltimore, Md. 05 pp. Colombia. Instituto de Desarrollo de los Recursos Naturales, Bogota, Colombia. 391 pp. Goodyear, C.P. 1988. The Gulf of Mexico fishery

  11. Laser Optics/Combustion Diagnostics.

    DTIC Science & Technology

    1986-07-01

    The flame was characterized pri- marily by turbulence, driven by the shear produced between the two fluid flows. Fast cine photographs of the flame...Fig. - 7 serve as the motion-detection points of the t V deflected probe beams; the output ends are Incident upon a comercial fast pin photodiode. The

  12. Gorbachev and the New Soviet Agenda in the Third World

    DTIC Science & Technology

    1989-06-01

    days of Lenin, and before him Marx, because it includes fewer and fewer manual workers and more in service industries or whose work is mainly "mental...ambassador to Mexico expressed support for the ruling PRI’s (Partido Revolucionario Institucional ) presidential candidate, who was being opposed by

  13. Relationship of antral follicle counts to fertility and ovarian AMH mRNA levels in beef cows

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In mammalian females, reproductive senescence is associated with decreased numbers of follicles in the ovary. Anti-Mullerian Hormone (AMH) of ovarian origin has been proposed to be a biomarker of the number of follicles in the ovary and of fertility in women, as well as to control activation of pri...

  14. Squeezing a gel to establish network structure-transport property relationships

    NASA Astrophysics Data System (ADS)

    Chan, Edwin; Nadermann, Nichole; McLeod, Kelly; Tew, Greg

    2015-03-01

    Gels are used in many applications, ranging from drug delivery to water purification, where regulating transport of a particular permeant is critical. The structure of the gel determines its transport properties but developing the gel structure-transport property relationships often require multiple measurement techniques. In this work, we demonstrate poroelastic relaxation indentation (PRI) as a single measurement tool to establish the relationships between the polymer network structure and the transport properties of well-defined hydrogel networks synthesized via a thiol-norbornene click reaction of poly(ethylene glycol) (PEG) chains. We use PRI to quantify the mechanical and transport properties of a series of ``click'' hydrogels with different crosslink densities. By applying various thermodynamic network swelling models to the describe the mechanical response of these gels as measured from PRI, we are able to extract thermodynamic parameters of these hydrogels including the Flory chi parameter and the mesh size. We validate our approach by comparing the thermodynamic parameters obtained from PRI with results from neutrons scattering studies of the same series of hydrogels.

  15. Effect of Grain Size on the Internal Fracturing of Polycrystalline Ice,

    DTIC Science & Technology

    1986-07-01

    be- termined using a universal stage according to havior significantly. As grain size increased, pri- methods given by Langway (1958), and using a mary...Metallurgical Science, 16: 118-126. Metallurgica, 27: 1565-1602. Langway , C.C. (1958) Ice fabric and the universal Gold, L.W. (1960) The cracking activity in ice

  16. Unlocking Student Data Could Lead to "App Economy" for Colleges: Colleges Are Pressured to Open Up Student Data

    ERIC Educational Resources Information Center

    DeSantis, Nick

    2012-01-01

    College campuses are hothouses of data, including course schedules, degree requirements, and grades. But much of the information remains spread out across software systems or locked on university servers. Start-up companies want to pry the information loose from campus servers in order to offer personalized services that could transform the…

  17. Latin America Report No. 2672.

    DTIC Science & Technology

    1983-04-28

    someone to take the lead a little ahead of the rest of the leaders. I see now that none of the current leaders knows how to have this vision of the whole...the towns of Tijuana and Mexicali. In Puebla the PRI admits that "if a good candidate is not chosen, we may lose the capital. The blue and white is

  18. The Effect of Austenitizing Conditions on the Anisotropic Embrittlement of ESR (Electroslag Remelted) 4340 Steel.

    DTIC Science & Technology

    1986-10-01

    clusters were pri- marily alumina with some calcium present. Small amounts of cerium oxides, titanium and niobium carbo-nitrides were present. Sulphides...Armament, Munitions and Chemical Command, Dover, NJ 07801 2 ATTN: Technical Library Commander, U.S. Army Tank- Automotive Command, Warren, MI 48090 1 ATTN

  19. Modular mutagenesis of human placental ribonuclease inhibitor, a protein with leucine-rich repeats.

    PubMed Central

    Lee, F S; Vallee, B L

    1990-01-01

    Human placental ribonuclease inhibitor (PRI) is a potent protein inhibitor of pancreatic ribonucleases and the homologous blood vessel-inducing protein angiogenin. Although inhibition by PRI occurs with a 1:1 stoichiometry, its primary structure is composed predominantly of seven internal leucine-rich repeats. These internal repeats were systematically deleted either singly or in combination by "modular" mutagenesis. Deletion of repeat units 3 plus 4 or repeat unit 6 results in mutants that both bind to and inhibit ribonuclease A. Therefore, the angiogenin/ribonuclease binding site in PRI must reside primarily or entirely in repeats 1, 2, 5, or 7, the short N- or C-terminal segments, or a combination of these. Deletion of repeat units 3-5, 5-6, or 5 alone results in mutants that exhibit only binding activity. Hence, the binding site cannot reside exclusively in repeat 5. Other internal deletions or N- or C-terminal deletions of 6-86% of the protein all abolish activity. These results suggest that PRI has a modular structure, with one primary structural repeat constituting one module. The approach taken may be applicable to other proteins with repeat structures. Images PMID:2408043

  20. Situational Awareness in Aerospace Operations (La Perception de la Situation au cours des Operations Aeriennes)

    DTIC Science & Technology

    1990-04-01

    dane Is pries do conscience do In situation 2.1 Facteurs impliquds dana twriestatlon npatiale LA tiche do pilotage neat pas uno situation naturelle ...domouverimntit fixil pikr un bracelet bur Ie pal gna! droit 04npflotos a dtd utilsia. Ce capteur comptabil ice lea d~placernentm A partir d~une

  1. A luminescent and dichroic hexagermane.

    PubMed

    Roewe, Kimberly D; Rheingold, Arnold L; Weinert, Charles S

    2013-09-28

    The hexagermane Pr(i)3Ge(GePh2)4GePr(i)3 has been synthesized and is not only the first such linear oligogermane to be structurally characterized but also is the first such compound to exhibit fluorescence and dichroic properties when observed under different orientations of plane polarized visible light.

  2. EPA'S STUDY OF THE GENERATION AND CONTROL OF AIR POLLUTANTS FROM THE COMBUSTION OF ORIMULSION

    EPA Science Inventory

    The paper discusses an EPA study of the grneration and control of air pollutants from the combustion of Orimulsion, a high-sulfur liquid petroleum fuel composed of approximately 70% Venezuelan bitumen, 30% water, and trace amounts of surfactant. (NOTE: It is being used as the pri...

  3. Diurnal and seasonal dynamics of canopy-level solar-induced chlorophyll fluorescence and spectral reflectance indices in a cornfield

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A collaborative field campaign was undertaken to examine the temporal dynamics of canopy-level solar-induced fluorescence (SIF) and the Photochemical Reflectance Index (PRI) in conjunction with photosynthetic light use efficiency (LUE) obtained from fluxes measured at an instrumented tower. We condu...

  4. The conservation-production interface in rangelands: Acknowledging tradeoffs and moving towards win-win solutions

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Provision of wildlife habitat in rangelands, particularly for birds of conservation concern, is increasingly recognized as an important ecosystem service. Accommodating human use is also a key component of ecosystem management. Most remaining grassland bird habitat in the western Great Plains is pri...

  5. The Vietnam Cauldron: Defense Intelligence in the War for Southeast Asia

    DTIC Science & Technology

    2012-01-01

    battle division, wrote to his wife: The types from DIA were here and badgered me endlessly trying to pry the truth from my sealed lips. They smell a...his landing craft of 65 men), and saw action in all of the major operations in the European Theater until the end of the war.84 During the Korean

  6. Elastic and Viscoelastic Wave Scattering and Diffraction.

    DTIC Science & Technology

    1981-01-01

    scattering and diffration at various discon- tinuities is dicsussed by Keller(1958, 1962), Keller and Karal(1964) and Kouyoumjian (1975). Excellent...and the receiver are kept far enough from each end of the cylinder so that diffrations from the ends do not interfere with the arrivals of pri- mary

  7. SEASONAL AND REGIONAL VARIATIONS OF PRIMARY AND SECONDARY ORGANIC AEROSOLS OVER THE CONTINENTAL UNITED STATES: OBSERVATION-BASED ESTIMATES AND MODEL EVALUATION

    EPA Science Inventory

    Due to the lack of an analytical technique for directly quantifying the atmospheric concentrations of primary (OCpri) and secondary (OCsec) organic carbon aerosols, different indirect methods have been developed to estimate their concentrations. In this stu...

  8. Plastic Clamp Retains Clevis Pin

    NASA Technical Reports Server (NTRS)

    Cortes, R. G.

    1983-01-01

    Plastic clamp requires no special installation or removal tools. Clamp slips easily over end of pin. Once engaged in groove, holds pin securely. Installed and removed easily without special tools - screwdriver or putty knife adequate for prying out of groove. Used to retain bearings, rollers pulleys, other parts that rotate. Applications include slowly and intermittently rotating parts in appliances.

  9. Improved high-throughput bioassay for Rhyzopertha dominica (F.) (Coleoptera: Bostrichidae)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    As we gain more information through functional genomic studies of Rhyzopertha dominica (F.), we need a high throughput bioassay system to screen potential biopesticides. R. dominica is an internal feeder during immature stages and presents unique challenges with traditional bioassay methods. Our pri...

  10. A Methodology for Selection of a Satellite Servicing Architecture. Volume 3. Appendices.

    DTIC Science & Technology

    1985-12-01

    the optimization program , and to Major Ken Feldman for his assistance with the value system. Our heartfelt thanks also goes to Mary Peltzer and Maggie...Performance Index PI Performance Indicies PPI Pairwise Perferentially Independent PROCES Computer Program for Vector Optimization Problems Pri...NASA Systems Engineering and Integration Space Station Program Office. Space Station Rererence Configuration Description. NASA Lyndon B. Johnson Space

  11. Superinfection exclusion of the ruminant pathogen anaplasma marginale in the tick vector is dependent on time between exposures to the strains

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The remarkable genetic diversity of vector-borne pathogens allows for the establishment of superinfection in the mammalian host. To have a long-term impact on population strain structure, the introduced strains must also be transmitted by a vector population that has been exposed to the existing pri...

  12. Cytoplasmic Drosha activity generated by alternative splicing

    PubMed Central

    Dai, Lisheng; Chen, Kevin; Youngren, Brenda; Kulina, Julia; Yang, Acong; Guo, Zhengyu; Li, Jin; Yu, Peng; Gu, Shuo

    2016-01-01

    RNase III enzyme Drosha interacts with DGCR8 to form the Microprocessor, initiating canonical microRNA (miRNA) maturation in the nucleus. Here, we re-evaluated where Drosha functions in cells using Drosha and/or DGCR8 knock out (KO) cells and cleavage reporters. Interestingly, a truncated Drosha mutant located exclusively in the cytoplasm cleaved pri-miRNA effectively in a DGCR8-dependent manner. In addition, we demonstrated that in vitro generated pri-miRNAs when transfected into cells could be processed to mature miRNAs in the cytoplasm. These results indicate the existence of cytoplasmic Drosha (c-Drosha) activity. Although a subset of endogenous pri-miRNAs become enriched in the cytoplasm of Drosha KO cells, it remains unclear whether pri-miRNA processing is the main function of c-Drosha. We identified two novel in-frame Drosha isoforms generated by alternative splicing in both HEK293T and HeLa cells. One isoform loses the putative nuclear localization signal, generating c-Drosha. Further analysis indicated that the c-Drosha isoform is abundant in multiple cell lines, dramatically variable among different human tissues and upregulated in multiple tumors, suggesting that c-Drosha plays a unique role in gene regulation. Our results reveal a new layer of regulation on the miRNA pathway and provide novel insights into the ever-evolving functions of Drosha. PMID:27471035

  13. Defining Transcriptional Regulatory Mechanisms for Primary let-7 miRNAs.

    PubMed

    Gaeta, Xavier; Le, Luat; Lin, Ying; Xie, Yuan; Lowry, William E

    2017-01-01

    The let-7 family of miRNAs have been shown to control developmental timing in organisms from C. elegans to humans; their function in several essential cell processes throughout development is also well conserved. Numerous studies have defined several steps of post-transcriptional regulation of let-7 production; from pri-miRNA through pre-miRNA, to the mature miRNA that targets endogenous mRNAs for degradation or translational inhibition. Less-well defined are modes of transcriptional regulation of the pri-miRNAs for let-7. let-7 pri-miRNAs are expressed in polycistronic fashion, in long transcripts newly annotated based on chromatin-associated RNA-sequencing. Upon differentiation, we found that some let-7 pri-miRNAs are regulated at the transcriptional level, while others appear to be constitutively transcribed. Using the Epigenetic Roadmap database, we further annotated regulatory elements of each polycistron identified putative promoters and enhancers. Probing these regulatory elements for transcription factor binding sites identified factors that regulate transcription of let-7 in both promoter and enhancer regions, and identified novel regulatory mechanisms for this important class of miRNAs.

  14. Tool Removes Coil-Spring Thread Inserts

    NASA Technical Reports Server (NTRS)

    Collins, Gerald J., Jr.; Swenson, Gary J.; Mcclellan, J. Scott

    1991-01-01

    Tool removes coil-spring thread inserts from threaded holes. Threads into hole, pries insert loose, grips insert, then pulls insert to thread it out of hole. Effects essentially reverse of insertion process to ease removal and avoid further damage to threaded inner surface of hole.

  15. Sketching a Context for Instructional Technology.

    ERIC Educational Resources Information Center

    de Lone, Richard H.

    Instructional technology has dramatized the need for a complete overhaul of educational systems; tacking on "innovations" will not do. The grip of dead tradition on education must be pried loose. Process, rather than content, should be stressed in learning. The challenge for instructional technology, as for education in general, is to devise an…

  16. Utilizing in situ Directional Hyperpectral Measurements to Validate Bio-Indicator Simulations for a Corn Crop Canaopy

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Two radiative transfer canopy models, SAIL and the Markov-Chain Canopy Reflectance Model (MRCM), were coupled with in situ leaf optical properties to simulate canopy-level spectral band ratio vegetation indices with the focus on the Photochemical Reflectance Index (PRI) in a cornfield. In situ hyper...

  17. Exposure to ozone modulates human airway protease/antiprotease balance contributing to increased influenza A infection

    EPA Science Inventory

    Exposure to oxidant air pollution is associated with Increased respiratory morbiditses and susceptibility to Infections Ozone is a commonly encountered oxidant air pollutant, yet Its effects on influenza infections in humans are not known ‘the greater Mexico City area was the pri...

  18. Partnership for Rural Improvement: An Emerging Rural Planning and Development Model. Annual Report 1978-1979.

    ERIC Educational Resources Information Center

    Hagood, Richard A.

    Covering 1978-1979, the third annual report of the Partnership for Rural Improvement (PRI) highlights the progress made toward major program objectives and points out certain weaknesses in the model. Section I discusses program rationale, program design, and evaluation research design. Section II summarizes a selection of the major achievements…

  19. Dual purpose use of preterm piglets as a model of pediatric GI disease

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Necrotizing enterocolitis (NEC) is the most common gastrointestinal complication in human neonates, yet the pathogenesis of this disease remains poorly understood. A fundamental approach to understanding the etiology and underlying biology of NEC is the use of in vivo experimental animal models, pri...

  20. Report of Accomplishments under the Airport Improvement Program.

    DTIC Science & Technology

    1983-09-30

    0) RUNLWAYMLhy>, FRIEDMAN MEMORIA :. ACCESLS WAY :fHppjV’EMO;:tr, * (COMMERCIAL, HAIILEY U.. 43t, 1% ISCELLAINiAUS SA!L: :v -YT;;:- FRIEDMAN MEMORIA ...f wr , A I- 7’A:. Nt,!, f "MY 6 %.*~ . . . . *, 4 %- M4 * TABLE AIRPORTS GRANT-IN-AID PR(Y 1 RAM PROJECTS PLACED UNDER GRANT AP~, Location andl

  1. Interactive effects of deficit irrigation, elevated temperature, and elevated [CO2] on peanut growth in low irrigation production settings

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Improving crop water use (both agronomic and biological) is critical to most cropping areas around the world. The persistance of adverse climate conditions and predicted decreased availability of fresh water for crop production are the largest challenges to agriculture in the coming decades. Our pri...

  2. Microprocessor activity controls differential miRNA biogenesis In Vivo.

    PubMed

    Conrad, Thomas; Marsico, Annalisa; Gehre, Maja; Orom, Ulf Andersson

    2014-10-23

    In miRNA biogenesis, pri-miRNA transcripts are converted into pre-miRNA hairpins. The in vivo properties of this process remain enigmatic. Here, we determine in vivo transcriptome-wide pri-miRNA processing using next-generation sequencing of chromatin-associated pri-miRNAs. We identify a distinctive Microprocessor signature in the transcriptome profile from which efficiency of the endogenous processing event can be accurately quantified. This analysis reveals differential susceptibility to Microprocessor cleavage as a key regulatory step in miRNA biogenesis. Processing is highly variable among pri-miRNAs and a better predictor of miRNA abundance than primary transcription itself. Processing is also largely stable across three cell lines, suggesting a major contribution of sequence determinants. On the basis of differential processing efficiencies, we define functionality for short sequence features adjacent to the pre-miRNA hairpin. In conclusion, we identify Microprocessor as the main hub for diversified miRNA output and suggest a role for uncoupling miRNA biogenesis from host gene expression.

  3. Defining Transcriptional Regulatory Mechanisms for Primary let-7 miRNAs

    PubMed Central

    Gaeta, Xavier; Le, Luat; Lin, Ying; Xie, Yuan; Lowry, William E.

    2017-01-01

    The let-7 family of miRNAs have been shown to control developmental timing in organisms from C. elegans to humans; their function in several essential cell processes throughout development is also well conserved. Numerous studies have defined several steps of post-transcriptional regulation of let-7 production; from pri-miRNA through pre-miRNA, to the mature miRNA that targets endogenous mRNAs for degradation or translational inhibition. Less-well defined are modes of transcriptional regulation of the pri-miRNAs for let-7. let-7 pri-miRNAs are expressed in polycistronic fashion, in long transcripts newly annotated based on chromatin-associated RNA-sequencing. Upon differentiation, we found that some let-7 pri-miRNAs are regulated at the transcriptional level, while others appear to be constitutively transcribed. Using the Epigenetic Roadmap database, we further annotated regulatory elements of each polycistron identified putative promoters and enhancers. Probing these regulatory elements for transcription factor binding sites identified factors that regulate transcription of let-7 in both promoter and enhancer regions, and identified novel regulatory mechanisms for this important class of miRNAs. PMID:28052101

  4. Technology Development for Small High Speed, Mainshaft Roller Bearings.

    DTIC Science & Technology

    1986-04-01

    United Technologies Prdtt and Whitrey Canada, Box 10 Longueuil , Quebec J4K 4X9 ,.pri 1 198f. DTIC Fina Report for Period September 197 - October 1985...This report describes the work performed by the Pratt & Whitney Canada Inc., of United Technologies Corporation, Box 10, Longueuil , Quebec J4K 4X9

  5. CORN FLAVOR

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Corn is a large part of the modern diet through sweeteners, oil, processed foods, and animal-derived foods. In addition, corn is eaten directly in bread and cereal-type foods, snack foods, and foods made from masa flour. Corn gluten meal is a byproduct of grain processed by wet milling. Although pri...

  6. Health Instruction Packages: Consumer--Birth Control.

    ERIC Educational Resources Information Center

    Pries, Rose Mary; And Others

    Designed for the general public, these three learning modules utilize text, illustrations, and exercises to describe various methods of birth control. The first module, "All about Contraception for the Teenage New Mother" by Rose Mary Pries, discusses the desirability of planned pregnancy and reviews the effectiveness and side effects of…

  7. US EPA, Pesticide Product Label, BARDAC 203-MP, 03/08 ...

    EPA Pesticide Factsheets

    2011-04-14

    ... IDTE TD PHYSICI .. , Pr.,,'I. "".,1 ~ II, ",I"i"ic,te t., ,se ,~ "st,it I.,., • u"ts ',IilSl ci,,,I,I.,, ,hd. rtSflrlln, '.,nssi'" I" c,",lun "I, h ,,,., ... 1[$1 lUn.dli &Of1° ) •• • ...

  8. WISC-IV and WISC-III Profiles in Children with ADHD

    ERIC Educational Resources Information Center

    Mayes, Susan Dickerson; Calhoun, Susan L.

    2006-01-01

    Wechsler Intelligence Scale for Children, 3rd and 4th editions (WISC-III n = 586 and WISC-IV n = 118), profiles were compared for children with ADHD and normal intelligence. Mean Verbal Comprehension Index (VCI) and Perceptual Organization/Perceptual Reasoning Index (POI/PRI) scores were significantly higher than Freedom From…

  9. Spectral Bio-indicator Simulations for Tracking Photosynthetic Activities in a Corn Field

    NASA Technical Reports Server (NTRS)

    Cheng, Yen-Ben; Middleton, Elizabeth M.; Huemmrich, K. Fred; Zhang, Qingyuan; Corp, Lawrence; Campbell, Petya; Kustas, William

    2011-01-01

    Accurate assessment of vegetation canopy optical properties plays a critical role in monitoring natural and managed ecosystems under environmental changes. In this context, radiative transfer (RT) models simulating vegetation canopy reflectance have been demonstrated to be a powerful tool for understanding and estimating spectral bio-indicators. In this study, two narrow band spectroradiometers were utilized to acquire observations over corn canopies for two summers. These in situ spectral data were then used to validate a two-layer Markov chain-based canopy reflectance model for simulating the Photochemical Reflectance Index (PRI), which has been widely used in recent vegetation photosynthetic light use efficiency (LUE) studies. The in situ PRI derived from narrow band hyperspectral reflectance exhibited clear responses to: 1) viewing geometry which affects the asset of light environment; and 2) seasonal variation corresponding to the growth stage. The RT model (ACRM) successfully simulated the responses to the variable viewing geometry. The best simulations were obtained when the model was set to run in the two layer mode using the sunlit leaves as the upper layer and shaded leaves as the lower layer. Simulated PRI values yielded much better correlations to in situ observations when the cornfield was dominated by green foliage during the early growth, vegetative and reproductive stages (r = 0.78 to 0.86) than in the later senescent stage (r = 0.65). Further sensitivity analyses were conducted to show the important influences of leaf area index (LAI) and the sunlit/shaded ratio on PRI observations.

  10. Predicting Photosynthetic Fluxes from Spectral Reflectance of Leaves and Canopies

    NASA Technical Reports Server (NTRS)

    Gamon, John A.

    1997-01-01

    The central hypothesis of this study has been that photosynthetic efficiency and capacity can be predicted from 'physiological reflectance indices' derived from spectral reflectance of leaves and canopies. I have approached this topic with a combination of laboratory and field experiments, and have also explored the potential of deriving a meaningful physiological index from imaging spectrometry (e.g. AVIRIS). A few highlights are presented below. The main emphasis has been on the 'Photochemical Reflectance Index' (PRI), derived from reflectance at 531 nm and 570 nm. Unlike most 'conventional' vegetation indices (e.g. NDVI), PRI changes rapidly both with illumination and physiological state, because it detects the interconversion of xanthophyll cycle pigments, which serve as photoregulatory pigments and control energy distribution for the photosynthetic system. This approach has differed dramatically from most remote sensing in that it has emphasized temporal variation in narrow-band spectral signatures, instead of spatial patterns of broadband indices. Our primary conclusion has been that PRI works well as an index of photosynthetic light-use efficiency at the leaf scale, much in the same way as the fluorescence index DeltaF/Fm. However, unlike DeltaF/Fm which must be measured at close scales, PRI can be sampled at a range of spatial scales, presenting the possibility of monitoring photosynthetic fluxes remotely.

  11. Alternative splicing affects the subcellular localization of Drosha

    PubMed Central

    Link, Steffen; Grund, Stefanie E.; Diederichs, Sven

    2016-01-01

    The RNase III enzyme Drosha is a key factor in microRNA (miRNA) biogenesis and as such indispensable for cellular homeostasis and developmental processes. Together with its co-factor DGCR8, it converts the primary transcript (pri-miRNA) into the precursor hairpin (pre-miRNA) in the nucleus. While the middle and the C-terminal domain are crucial for pri-miRNA processing and DGCR8 binding, the function of the N-terminus remains cryptic. Different studies have linked this region to the subcellular localization of Drosha, stabilization and response to stress. In this study, we identify alternatively spliced Drosha transcripts that are devoid of a part of the arginine/serine-rich (RS-rich) domain and expressed in a large set of human cells. In contrast to their expected habitation, we find two isoforms also present in the cytoplasm, while the other two isoforms reside exclusively in the nucleus. Their processing activity for pri-miRNAs and the binding to co-factors remains unaltered. In multiple cell lines, the endogenous mRNA expression of the Drosha isoforms correlates with the localization of endogenous Drosha proteins. The pri-miRNA processing efficiency is not significantly different between groups of cells with or without cytoplasmic Drosha expression. In summary, we discovered novel isoforms of Drosha with differential subcellular localization pointing toward additional layers of complexity in the regulation of its activity. PMID:27185895

  12. Trends in experimental high-energy physics

    SciTech Connect

    Sanford, T.W.L.

    1982-06-01

    Data from a scan of papers in Physical Review Letters and Physical Review are used to demonstrate that American high-energy physicists show a pattern of accelerator and instrumentation usage characteristic of that expected from the logistic-substitution model of Marchetti and of Fischer and Pry.

  13. Development and Validation of Rapid Assessment Indices of Condition for Coastal for Coastal Wetlands in Southern New England, USA

    EPA Science Inventory

    Vegetation, soils, on-site disturbances, and watershed land use and land cover were assessed at 81 coastal wetland sites using the New England Rapid Asssessment Method (NERAM). Condition indices (CIs) were derived from various combinations of the multi-dimensional data using pri...

  14. Rbfox3 Controls the Biogenesis of a Subset of MicroRNAs

    PubMed Central

    Kim, Kee K.; Yang, Yanqin; Zhu, Jun; Adelstein, Robert S.; Kawamoto, Sachiyo

    2014-01-01

    RNA-binding proteins (RBPs) regulate numerous aspects of gene expression, thus identification of endogenous targets of RBPs is important for understanding their functions in cells. Here we identified transcriptome-wide targets of Rbfox3 in neuronally differentiated P19 cells and mouse brain using Photoactivatable-Ribonucleoside-Enhanced Crosslinking and Immunoprecipitation (PAR-CLIP). Although Rbfox3 is known to regulate pre-mRNA splicing through binding to the UGCAUG motif, PAR-CLIP analysis revealed diverse Rbfox3 targets including primary-microRNAs (pri-miRNAs) which lack the UGCAUG motif. Induced expression and depletion of Rbfox3 led to changes in the expression levels of a subset of PAR-CLIP-detected miRNAs. In vitro analyses revealed that Rbfox3 functions as a positive and a negative regulator at the stage of pri-miRNA processing to precursor-miRNA. Rbfox3 binds directly to pri-miRNAs and regulates the recruitment of the microprocessor complex to pri-miRNAs. Our study proposes a novel function for Rbfox3 in miRNA biogenesis. PMID:25240799

  15. ENVIRONMENTAL QUALITY INFORMATION SYSTEM - EQULS® - ITER

    EPA Science Inventory

    This project consisted of an evaluation of the Environmental Quality Information System (EQuIS) software designed by Earthsoft, Inc. as an environmental data management and analysis platform for monitoring and remediation projects. In consultation with the EQuIS vendor, six pri...

  16. Gone but Not Forgotten

    ERIC Educational Resources Information Center

    Monastersky, Richard

    2006-01-01

    Neanderthals, those long-lost cousins of modern humans, will not remain lost for long, at least from the prying eyes of geneticists. Two teams of scientists announced that for the first time they had analyzed DNA from the nuclei of cells preserved in 37,000-year-old Neanderthal fossils. That, they say, lays the groundwork for determining the…

  17. Beyond the Narrative Mode in the Composition Classroom: Embracing a Return to the Personal Essay

    ERIC Educational Resources Information Center

    Haugen, Hayley Mitchell

    2013-01-01

    Knoblauch and Brannon might suggest I pry loose the grip that ancient rhetorical tradition has on my modern classroom, but I'm not convinced I can so easily abandon the ancient rhetoricians. Learning to embrace the different, more creative, and less frequently acknowledged elements of this tradition may be the way for me to go instead. The ancient…

  18. SEASONAL AND REGIONAL VARIATIONS OF PRIMARY AND SECONDARY ORGANIC AEROSOLS OVER THE CONTINENTAL UNITED STATES: SEMI-EMPIRICAL ESTIMATES AND MODEL EVALUATION

    EPA Science Inventory

    Seasonal and regional variations of primary (OCpri) and secondary (OCsec) organic carbon aerosols across the continental U.S. for the year 2001 were examined by a semi-empirical technique using observed OC and elemental carbon (EC) data from 142 routine moni...

  19. Battleship Dominance in the First Days of the Next War: Cruise Missiles or Bombers?

    DTIC Science & Technology

    2007-11-02

    destroy the following number of targets. 29 Table 8: Required TLAM Strikes to Destroy Each Target Element Taget #TgtFJe P(Success) # Strikes (n) Req...Table 11: Bomber Results, Day 3, Case 1 Pri Taget #Tg He Type Acfi Munitions Avail Sorties # MIMT W P(Küi) Req Strike it Dest Attrition 4

  20. Atmospheric Modeling

    EPA Science Inventory

    Although air quality models have been applied historically to address issues specific to ambient air quality standards (i.e., one criteria pollutant at a time) or welfare (e.g.. acid deposition or visibility impairment). they are inherently multipollutant based. Therefore. in pri...

  1. Homology mapping of T-DNA regions on three Agrobacterium rhizogenes Ri plasmids by electron microscope heteroduplex studies.

    PubMed

    Brevet, J; Tempé, J

    1988-03-01

    Recombinant plasmids carrying segments of the Agrobacterium rhizogenes T-DNA regions of the three Ri plasmids 1855 (TL-DNA only), 8196, and 2659 were used for establishing homology maps by electron microscope examination of heteroduplexes. Plasmid DNA was linearized by digestion with suitable restriction endonucleases in order to generate large T-DNA segments. Heteroduplexes were prepared in 50% formamide and spread under standard conditions. Measurements of double and single strands allowed the drawing of homology maps. The three T-DNAs share mainly two homologous sequences of respectively about 2.5 and 1.5 kb, bracketing a largely nonhomologous central part which is about 5.5 kb long. The T-DNAs from pRi1855 and pRi2659 appear to be more related to each other than to that of pRi8196. With reference to the published nucleotide sequence of the TL-DNA of pRiA4 (probably identical to that of pRi1855), ORFs 8 and 14 seem to be the most conserved sequences of the three T-DNAs. The significance of these conserved sequences is unclear since the genetic loci involved in rhizogenicity of agropine strains identified previously are located in nonhomologous regions.

  2. Integrative analysis of 111 reference human epigenomes

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The reference human genome sequence set the stage for studies of genetic variation and its association with human disease, but epigenomic studies lack a similar reference. To address this need, the NIH Roadmap Epigenomics Consortium generated the largest collection so far of human epigenomes for pri...

  3. The photochemical reflectance index from directional cornfield reflectances: Observations and simulations

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The two-layer Markov chain Analytical Canopy Reflectance Model (ACRM) was linked with in situ hyperspectral leaf optical properties to simulate the Photochemical Reflectance Index (PRI) for a corn crop canopy at three different growth stages. This is an extended study after a successful demonstratio...

  4. Extraction of pulse repetition intervals from sperm whale click trains for ocean acoustic data mining.

    PubMed

    Zaugg, Serge; van der Schaar, Mike; Houégnigan, Ludwig; André, Michel

    2013-02-01

    The analysis of acoustic data from the ocean is a valuable tool to study free ranging cetaceans and anthropogenic noise. Due to the typically large volume of acquired data, there is a demand for automated analysis techniques. Many cetaceans produce acoustic pulses (echolocation clicks) with a pulse repetition interval (PRI) remaining nearly constant over several pulses. Analyzing these pulse trains is challenging because they are often interleaved. This article presents an algorithm that estimates a pulse's PRI with respect to neighboring pulses. It includes a deinterleaving step that operates via a spectral dissimilarity metric. The sperm whale (SW) produces trains with PRIs between 0.5 and 2 s. As a validation, the algorithm was used for the PRI-based identification of SW click trains with data from the NEMO-ONDE observatory that contained other pulsed sounds, mainly from ship propellers. Separation of files containing SW clicks with a medium and high signal to noise ratio from files containing other pulsed sounds gave an area under the receiver operating characteristic curve value of 0.96. This study demonstrates that PRI can be used for the automated identification of SW clicks and that deinterleaving via spectral dissimilarity contributes to algorithm performance.

  5. Damage of chromosoms under irradiation of human blood lymphocytes and development of bystander effect.

    PubMed

    Shemetun, O V

    2016-12-01

    Meta: doslidzhennia rozpodilu radiatsiy̆no indukovanykh poshkodzhen' sered khromosom i ïkh bendiv v oprominenykh in vitro limfotsytakh krovi liudyny ta v neoprominenykh klitynakh svidkakh.Material i metody doslidzhennia: kul'tyvuvannia limfotsytiv peryferychnoï krovi liudyny za napivmikrometodom D. A. Hungerford, modeliuvannia radiatsiy̆no indukovanogo efektu svidka v zmishanykh kul'turakh z oprominenykh in vitro ta neoprominenykh limfotsytiv krovi osib riznoï stati, GTG zabarvlennia metafaznykh khromosom ta ïkh tsytoge netychnyy̆ analiz.Rezul'taty. Identyfikovano tochky rozryviv khromosom pry formuvanni aberatsiy̆ v oprominenykh in vitro v dozakh 0,25 Gr (95 rozryviv v 1248 klitynakh) i 1,0 Gr (227 rozryviv v 726 klitynakh) limfotsytakh peryferychnoï krovi liu dyny ta v neoprominenykh klitynakh svidkakh pry ïkh sumisnomu kul'tyvuvanni z oprominenymy in vitro limfotsyta my liudyny (51 rozryv v 1137 klitynakh pry oprominenni sumizhnoï populiatsiï limfotsytiv v dozi 0,25 Gr ta 75 roz ryviv v 1321 klityni pry oprominenni sumizhnoï populiatsiï limfotsytiv v dozi 1 Gr). Doslidzheno rozpodil za reiestrovanykh poshkodzhen' sered khromosom ta ïkh bendiv.Vysnovky. V oprominenykh in vitro limfotsytakh peryferychnoï krovi liudyny ta klitynakh svidkakh chastota poshkod zhenykh bendiv ta kil'kist' rozryviv, iaki lokalizuvalys' v nykh, perevyshchuvala kontrol'nu (r < 0,01). Iak pry bez poseredn'omu poshkodzhenni ionizuiuchoiu radiatsiieiu, tak i pry formuvanni rozryviv vnaslidok induktsiï efektu svidka, khromosomy poshkodzhuvalys' vidpovidno do ïkh vidnosnoï dovzhyny. Roztashuvannia bendiv, v iakykh za reiestrovano bil'shu kil'kist' rozryviv, spivpadalo z «gariachymy tochkamy» poshkodzhuvanosti khromosom pry op rominenni ta fragil'nymy say̆tamy. Chutlyvishymy do poshkodzhennia buly G negatyvni eukhromatynovi smugy khro mosom, v iakykh lokalizuvalys' 82 88 % rozryviv. Poshkodzhuvanist' telomernykh ray̆oniv v oprominenykh klitynakh ne mala

  6. Spectral determination of concentrations of functionally diverse pigments in increasingly complex arctic tundra canopies.

    PubMed

    Boelman, Natalie T; Magney, Troy S; Logan, Barry A; Griffin, Kevin L; Eitel, Jan U H; Greaves, Heather; Prager, Case M; Vierling, Lee A

    2016-09-01

    As the Arctic warms, tundra vegetation is becoming taller and more structurally complex, as tall deciduous shrubs become increasingly dominant. Emerging studies reveal that shrubs exhibit photosynthetic resource partitioning, akin to forests, that may need accounting for in the "big leaf" net ecosystem exchange models. We conducted a lab experiment on sun and shade leaves from S. pulchra shrubs to determine the influence of both constitutive (slowly changing bulk carotenoid and chlorophyll pools) and facultative (rapidly changing xanthophyll cycle) pigment pools on a suite of spectral vegetation indices, to devise a rapid means of estimating within canopy resource partitioning. We found that: (1) the PRI of dark-adapted shade leaves (PRIo) was double that of sun leaves, and that PRIo was sensitive to variation among sun and shade leaves in both xanthophyll cycle pool size (V + A + Z) (r (2) = 0.59) and Chla/b (r (2) = 0.64); (2) A corrected PRI (difference between dark and illuminated leaves, ΔPRI) was more sensitive to variation among sun and shade leaves in changes to the epoxidation state of their xanthophyll cycle pigments (dEPS) (r (2) = 0.78, RMSE = 0.007) compared to the uncorrected PRI of illuminated leaves (PRI) (r (2) = 0.34, RMSE = 0.02); and (3) the SR680 index was correlated with each of (V + A + Z), lutein, bulk carotenoids, (V + A + Z)/(Chla + b), and Chla/b (r (2) range = 0.52-0.69). We suggest that ΔPRI be employed as a proxy for facultative pigment dynamics, and the SR680 for the estimation of constitutive pigment pools. We contribute the first Arctic-specific information on disentangling PRI-pigment relationships, and offer insight into how spectral indices can assess resource partitioning within shrub tundra canopies.

  7. Seasonal Changes in Remote Vegetation Indices and Net Photosynthesis of Japanese Larch Needles

    NASA Astrophysics Data System (ADS)

    Nishida, K.; Nakaji, T.; Oguma, H.; Fujinuma, Y.

    2004-12-01

    We investigated the seasonal pattern of four kinds of remote vegetation indices (NDVI, PRI, [(1/rRedEdge)-(1/rNIR)] and [(1/rGreen)-(1/rNIR)]) and their correlation to photosynthetic activity in the needle leaves of Japanese larch. In the 42-year-old larch forest (Tomakomai, Japan), the diurnal courses of spectral reflectance and gas exchange rates of larch needles were periodically investigated during early June to late October in 2003. In the Tomakomai larch forest, expansion of short-shoot needles was started from mid-May, and yellow color change of the needle leaves was observed in late October. The seasonal pattern of index value differed among the vegetation indices. For example, daytime mean NDVI showed constant value from late June to early October. The [(1/rRedEdge)-(1/rNIR)] and PRI were increased during summer, and their peak were observed in July and August, respectively. Although the values of NDVI, PRI and [(1/rRedEdge)-(1/rNIR)] were depressed in late October with autumn senescence of the needles, the [(1/rGreen)-(1/rNIR)] in larch needles was not changed even in yellow colored needles. Consequently, correlation of these vegetation indices and seasonal changed photosynthetic parameters such as net photosynthetic rate (Pn) and photosynthetic light use efficiency (LUE) also differed among the indices. Although the PRI, NDVI and [(1/rRedEdge)-(1/rNIR)] positively correlated with daily maximum Pn and daily means of Pn and LUE, no correlation was found between [(1/rGreen)-(1/rNIR)] and the measured photosynthetic parameters. Based on the results of Pearson_fs correlation test, PRI and [(1/rRedEdge)-(1/rNIR)] were considered to be most useful index for the estimations of seasonal changes in Pn and LUE, respectively.

  8. On the Use of Leaf Spectral Indices to Assess Water Status and Photosynthetic Limitations in Olea europaea L. during Water-Stress and Recovery

    PubMed Central

    Sun, Pengsen; Wahbi, Said; Tsonev, Tsonko; Haworth, Matthew; Liu, Shirong; Centritto, Mauro

    2014-01-01

    Diffusional limitations to photosynthesis, relative water content (RWC), pigment concentrations and their association with reflectance indices were studied in olive (Olea europaea) saplings subjected to water-stress and re-watering. RWC decreased sharply as drought progressed. Following rewatering, RWC gradually increased to pre-stress values. Photosynthesis (A), stomatal conductance (gs), mesophyll conductance (gm), total conductance (gt), photochemical reflectance index (PRI), water index (WI) and relative depth index (RDI) closely followed RWC. In contrast, carotenoid concentration, the carotenoid to chlorophyll ratio, water content reflectance index (WCRI) and structural independent pigment index (SIPI) showed an opposite trend to that of RWC. Photosynthesis scaled linearly with leaf conductance to CO2; however, A measured under non-photorespiratory conditions (A1%O2) was approximately two times greater than A measured at 21% [O2], indicating that photorespiration likely increased in response to drought. A1%O2 also significantly correlated with leaf conductance parameters. These relationships were apparent in saturation type curves, indicating that under non-photorespiratory conditions, CO2 conductance was not the major limitations to A. PRI was significant correlated with RWC. PRI was also very sensitive to pigment concentrations and photosynthesis, and significantly tracked all CO2 conductance parameters. WI, RDI and WCRI were all significantly correlated with RWC, and most notably to leaf transpiration. Overall, PRI correlated more closely with carotenoid concentration than SIPI; whereas WI tracked leaf transpiration more effectively than RDI and WCRI. This study clearly demonstrates that PRI and WI can be used for the fast detection of physiological traits of olive trees subjected to water-stress. PMID:25136798

  9. Overexpression of NF90-NF45 Represses Myogenic MicroRNA Biogenesis, Resulting in Development of Skeletal Muscle Atrophy and Centronuclear Muscle Fibers

    PubMed Central

    Todaka, Hiroshi; Higuchi, Takuma; Yagyu, Ken-ichi; Sugiyama, Yasunori; Yamaguchi, Fumika; Morisawa, Keiko; Ono, Masafumi; Fukushima, Atsuki; Tsuda, Masayuki; Taniguchi, Taketoshi

    2015-01-01

    MicroRNAs (miRNAs) are involved in the progression and suppression of various diseases through translational inhibition of target mRNAs. Therefore, the alteration of miRNA biogenesis induces several diseases. The nuclear factor 90 (NF90)-NF45 complex is known as a negative regulator in miRNA biogenesis. Here, we showed that NF90-NF45 double-transgenic (dbTg) mice develop skeletal muscle atrophy and centronuclear muscle fibers in adulthood. Subsequently, we found that the levels of myogenic miRNAs, including miRNA 133a (miR-133a), which promote muscle maturation, were significantly decreased in the skeletal muscle of NF90-NF45 dbTg mice compared with those in wild-type mice. However, levels of primary transcripts of the miRNAs (pri-miRNAs) were clearly elevated in NF90-NF45 dbTg mice. This result indicated that the NF90-NF45 complex suppressed miRNA production through inhibition of pri-miRNA processing. This finding was supported by the fact that processing of pri-miRNA 133a-1 (pri-miR-133a-1) was inhibited via binding of NF90-NF45 to the pri-miRNA. Finally, the level of dynamin 2, a causative gene of centronuclear myopathy and concomitantly a target of miR-133a, was elevated in the skeletal muscle of NF90-NF45 dbTg mice. Taken together, we conclude that the NF90-NF45 complex induces centronuclear myopathy through increased dynamin 2 expression by an NF90-NF45-induced reduction of miR-133a expression in vivo. PMID:25918244

  10. Influence of preformed donor-specific antibodies and C4d on early liver allograft function.

    PubMed

    Perera, M T; Silva, M A; Murphy, N; Briggs, D; Mirza, D F; Neil, D A H

    2013-12-01

    INTRODUCTION. The impact of preformed donor-specific antibodies (DSA) is incompletely understood in liver transplantation. The incidence and impact of preformed DSA on early post liver transplant were assessed and these were correlated with compliment fragment C4d on allograft biopsy. METHODS. Pretransplant serum from 41 consecutive liver transplant recipients (brain dead donors; DBD = 27 and cardiac death donors; DCD = 14) were tested for class-specific anti-human leukocyte antigen (HLA) and compared against donor HLA types. Liver biopsies were taken during cold storage (t-1) and post-reperfusion (t0) stained with C4d and graded for preservation-reperfusion injury (PRI). RESULTS. Of the 41 recipients, 8 (20%) had anti-HLA class I/II antibodies pretransplant, 3 (7%) were confirmed preformed DSA; classes I and II (n=1) and class I only (n=2). No biopsies showed definite evidence of antibody-mediated rejection. Graft biopsies in overall showed only mild PRI with ischemic hepatocyte C4d pattern similar in both positive and negative DSA patients. One DSA-positive (33%) compared with four DSA-negative patients (10%) had significant early graft dysfunction; severe PRI causing graft loss from primary nonfunction was seen only in DSA-negative group. Allograft biopsy of preformed DSA-positive patient demonstrated only minimal PRI; however, no identifiable cause could be attributed to graft dysfunction other than preformed DSA. CONCLUSION. Preformed DSA are present in 5-10% liver transplant recipients. There is no association between anti-HLA DSA and PRI and C4d, but preformed DSA may cause early morbidity. Larger studies on the impact of DSA with optimization of C4d techniques are required.

  11. Occurrence of glycosidically conjugated 1-phenylethanol and its hydrolase β-primeverosidase in tea (Camellia sinensis) flowers.

    PubMed

    Zhou, Ying; Dong, Fang; Kunimasa, Aiko; Zhang, Yuqian; Cheng, Sihua; Lu, Jiamin; Zhang, Ling; Murata, Ariaki; Mayer, Frank; Fleischmann, Peter; Watanabe, Naoharu; Yang, Ziyin

    2014-08-13

    A previous study found that 1-phenylethanol (1PE) was a major endogenous volatile compound in tea (Camellia sinensis) flowers and can be transformed to glycosically conjugated 1PE (1PE-Gly). However, occurrences of 1PE-Gly in plants remain unknown. In this study, four 1PE-Glys have been isolated from tea flowers. Three of them were determined as (R)-1PE β-d-glucopyranoside ((R)-1PE-Glu), (S)-1PE-Glu, and (S)-1PE β-primeveroside ((S)-1PE-Pri), respectively, on the basis of NMR, MS, LC-MS, and GC-MS evidence. The other one was identified as (R)-1PE-Pri on the basis of LC-MS and GC-MS data. Moreover, these 1PE-Glys were chemically synthesized as the authentic standards to further confirm their occurrences in tea flowers. 1PE-Glu had a higher molar concentration than 1PE-Pri in each floral stage and organ. The ratio of (R) to (S) differed between 1PE-Glu and 1PE-Pri. In addition, a 1PE-Gly hydrolase β-primeverosidase recombinant protein produced in Escherichia coli exhibited high hydrolysis activity toward (R)-1PE-Pri. However, β-primeverosidase transcript level was not highly expressed in the anther part, which accumulated the highest contents of 1PE-Gly and 1PE. This suggests that 1PE-Gly may not be easily hydrolyzed to liberate 1PE in tea flowers. This study provides evidence of occurrences of 1PE-Glys in plants for the first time.

  12. Seasonal photosynthetic activity in evergreen conifer leaves monitored with spectral reflectance

    NASA Astrophysics Data System (ADS)

    Wong, C. Y.; Gamon, J. A.

    2013-12-01

    Boreal evergreen conifers must maintain photosynthetic systems in environments where temperatures vary greatly across seasons from high temperatures in the summer to freezing levels in the winter. This involves seasonal downregulation and photoprotection during periods of extreme temperatures. To better understand this downregulation, seasonal dynamics of photosynthesis of lodgepole (Pinus contorta D.) and ponderosa pine (Pinus ponderosa D.) were monitored in Edmonton, Canada over two years. Spectral reflectance at the leaf and stand scales was measured weekly and the Photochemical Reflectance Index (PRI), often used as a proxy for chlorophyll and carotenoid pigment levels and photosynthetic light-use efficiency (LUE), was used to track the seasonal dynamics of photosynthetic activity. Additional physiological measurements included leaf pigment content, chlorophyll fluorescence, and gas exchange. All the metrics indicate large seasonal changes in photosynthetic activity, with a sharp transition from winter downregulation to active photosynthesis in the spring and a more gradual fall transition into winter. The PRI was a good indicator of several other variables including seasonally changing photosynthetic activity, chlorophyll fluorescence, photosynthetic LUE, and pigment pool sizes. Over the two-year cycle, PRI was primarily driven by changes in constitutive (chlorophyll:carotenoid) pigment levels correlated with seasonal photosynthetic activity, with a much smaller variation caused by diurnal changes in xanthophyll cycle activity (conversion between violaxanthin & zeaxanthin). Leaf and canopy scale PRI measurements exhibited parallel responses during the winter-spring transition. Together, our findings indicate that evergreen conifers photosynthetic system possesses a remarkable degree of resilience in response to large temperature changes across seasons, and that optical remote sensing can be used to observe the seasonal effects on photosynthesis and

  13. Overexpression of NF90-NF45 Represses Myogenic MicroRNA Biogenesis, Resulting in Development of Skeletal Muscle Atrophy and Centronuclear Muscle Fibers.

    PubMed

    Todaka, Hiroshi; Higuchi, Takuma; Yagyu, Ken-ichi; Sugiyama, Yasunori; Yamaguchi, Fumika; Morisawa, Keiko; Ono, Masafumi; Fukushima, Atsuki; Tsuda, Masayuki; Taniguchi, Taketoshi; Sakamoto, Shuji

    2015-07-01

    MicroRNAs (miRNAs) are involved in the progression and suppression of various diseases through translational inhibition of target mRNAs. Therefore, the alteration of miRNA biogenesis induces several diseases. The nuclear factor 90 (NF90)-NF45 complex is known as a negative regulator in miRNA biogenesis. Here, we showed that NF90-NF45 double-transgenic (dbTg) mice develop skeletal muscle atrophy and centronuclear muscle fibers in adulthood. Subsequently, we found that the levels of myogenic miRNAs, including miRNA 133a (miR-133a), which promote muscle maturation, were significantly decreased in the skeletal muscle of NF90-NF45 dbTg mice compared with those in wild-type mice. However, levels of primary transcripts of the miRNAs (pri-miRNAs) were clearly elevated in NF90-NF45 dbTg mice. This result indicated that the NF90-NF45 complex suppressed miRNA production through inhibition of pri-miRNA processing. This finding was supported by the fact that processing of pri-miRNA 133a-1 (pri-miR-133a-1) was inhibited via binding of NF90-NF45 to the pri-miRNA. Finally, the level of dynamin 2, a causative gene of centronuclear myopathy and concomitantly a target of miR-133a, was elevated in the skeletal muscle of NF90-NF45 dbTg mice. Taken together, we conclude that the NF90-NF45 complex induces centronuclear myopathy through increased dynamin 2 expression by an NF90-NF45-induced reduction of miR-133a expression in vivo.

  14. The estrogen receptor-α-induced microRNA signature regulates itself and its transcriptional response

    PubMed Central

    Castellano, Leandro; Giamas, Georgios; Jacob, Jimmy; Coombes, R. Charles; Lucchesi, Walter; Thiruchelvam, Paul; Barton, Geraint; Jiao, Long R.; Wait, Robin; Waxman, Jonathan; Hannon, Gregory J.; Stebbing, Justin

    2009-01-01

    Following estrogenic activation, the estrogen receptor-α (ERα) directly regulates the transcription of target genes via DNA binding. MicroRNAs (miRNAs) modulated by ERα have the potential to fine tune these regulatory systems and also provide an alternate mechanism that could impact on estrogen-dependent developmental and pathological systems. Through a microarray approach, we identify the subset of microRNAs (miRNAs) modulated by ERα, which include upregulation of miRNAs derived from the processing of the paralogous primary transcripts (pri-) mir-17–92 and mir-106a-363. Characterization of the mir-17–92 locus confirms that the ERα target protein c-MYC binds its promoter in an estrogen-dependent manner. We observe that levels of pri-mir-17–92 increase earlier than the mature miRNAs derived from it, implicating precursor cleavage modulation after transcription. Pri-mir-17–92 is immediately cleaved by DROSHA to pre-miR-18a, indicating that its regulation occurs during the formation of the mature molecule from the precursor. The clinical implications of this novel regulatory system were confirmed by demonstrating that pre-miR-18a was significantly upregulated in ERα-positive compared to ERα-negative breast cancers. Mechanistically, miRNAs derived from these paralogous pri-miRNAs (miR-18a, miR-19b, and miR-20b) target and downregulate ERα, while a subset of pri-miRNA-derived miRNAs inhibit protein translation of the ERα transcriptional p160 coactivator, AIB1. Therefore, different subsets of miRNAs identified act as part of a negative autoregulatory feedback loop. We propose that ERα, c-MYC, and miRNA transcriptional programs invoke a sophisticated network of interactions able to provide the wide range of coordinated cellular responses to estrogen. PMID:19706389

  15. Vestibular and acustic dysfunctions in clean up workers of Chornobyl accident (30 years of follow up).

    PubMed

    Zabolotnyi, D I; Mishchanchuk, N S

    2016-12-01

    Meta – vyvchyty kliniko elektrofiziologichni porushennia pry vestybuliarniy̆ ta akustychniy̆ dysfunktsiiakh v uchas nykiv likvidatsïï naslidkiv avariï na Chornobyl's'kiy̆ atomniy̆ elektrostantsiï v zalezhnosti vid dozy ta tryvalosti diï ionizuiuchoï radiatsiï, osoblyvosti determinovanykh efektiv vprodovzh 30 rokiv pislia avariï.Material ta metody. U 7812 uchasnykiv likvidatsiï naslidkiv avariï na ChAES (ULNA na ChAES) cholovichoï stati, u to mu chysli u 325 osib, vidibranykh dlia prolongovanykh doslidzhen', u 1986 2015 rr. provedeni standartni kliniko elektrofiziologichni obstezhennia funktsiy̆ vestybuliarnogo ta akustychnogo analizatoriv. Vykonani matematychni metody analizu iz zastosuvanniam programnykh paketiv SYSTAT, EPICURE ta EGRET.Rezul'taty. Vstanovleni vestybuliarna ta akustychna dysfunktsiï za tsentral'nym typom z progresuiuchym rozvyt kom gal'mivnykh protsesiv u stovburomozkovykh, pidkorkovo korkovykh strukturakh vestybuliarnogo ta akustychnogo analizatoriv. Vyznachena zalezhnist' zmin u tsykh strukturakh vid velychyny dozy ta tryvalosti diï ionizuiuchoï radiatsiï. Vstanovleni zakonomirnosti determinovanykh radiatsiy̆nykh efektiv u vzaiemozv'iazku z formuvanniam or ganichnoï tserebrovaskuliarnoï patologiï v ULNA na ChAES u viddaleni pisliaavariy̆ni roky, iaki uzgodzhuiut'sia z ney̆ rofiziologichnymy, MRT ta inshymy obstezhenniamy, shcho pidtverdzheno pry koreliatsiy̆nomu analizi.Vysnovky. Vidznacheno, shcho vestybuliarna ta akustychna dysfunktsiï v ULNA na ChAES proiavliaiut'sia kliniko elekt rofiziologichnymy zminamy na rivni tsentral'nykh struktur doslidzhuvanykh analizatoriv, iaki vkazuiut' na para lelizm spil'nogo mekhanizmu determinovanykh radiatsiy̆nykh efektiv pry dozi 0,20 Gr,a takozh ïkh dozozalezhnist' u dy namitsi 30 pisliaavariy̆nykh rokiv. Vstanovleno, shcho vestybuliarna dysfunktsiia v ULNA na ChAES proiavliaiet'sia klinichno ranishe, a elektroakustychni ta elektrofiziologichni zminy pry

  16. Multi-parameter assessment of platelet inhibition and its stability during aspirin and clopidogrel therapy

    PubMed Central

    Timur, A. Anil; Murugesan, Gurunathan; Zhang, Li; Barnard, John; Bhatt, Deepak L.; Kottke-Marchant, Kandice

    2014-01-01

    Introduction Poor response to antiplatelet drugs is associated with adverse outcomes. We assessed platelet inhibition and its stability and tested correlation and agreement between platelet function assays. Methods Peripheral blood from 58 patients on both aspirin and clopidogrel who underwent percutaneous coronary intervention (PCI) was collected at hospital discharge (visit-1) and at 30–90 days (visit-2). Platelet function was measured using light transmission aggregometry (LTA-AA and LTA-ADP), VerifyNow (Aspirin; ARU and P2Y12; PRU), ex vivo TxB2, urinary 11dhTxB2, and VASP (PRI) assays. Data were analyzed as continuous, quartiles and binary. Patients were defined as aspirin poor responder (PR) with ARU ≥550, LTA-AA maximum ≥20%, TxB2 ≥1 ng/mL or 11dhTxB2 ≥1,500 pg/mg of creatinine and as clopidogrel PR with PRU ≥240, PRU ≥208, LTA-ADP maximum ≥40%, PRI ≥50%, or PRI ≥66%. Results Aspirin PR was 3–33% and clopidogrel PR was 10–35% in visit-1. LTA-AA, 11dhTxB2, and all clopidogrel-response measures showed correlation and agreement between visit-1 and visit-2. The highest agreement between two visits was revealed by PRU ≥240 and PRI ≥66% (PRU-κ=0.7, 95% CI=0.47, 0.93; PRI-κ=0.69, 95% CI=0.42, 0.95, p-values<0.001). Comparison of platelet function assays in a single visit (Visit-1) revealed a poor correlation between LTA-AA and 11dhTxB2 assays and no agreement among aspirin-response assays. The highest correlation and agreement were obtained between VerifyNow P2Y12 and VASP assays (rho=0.7, p-value<0.001 and PRU ≥208-PRI-κ=0.41–0.42, 95% CI=0.13, 0.69, p-values<0.001). Conclusions Platelet inhibition is stable during aspirin and clopidogrel treatment. Clopidogrel-response assays correlate and agree with each other better than aspirin-response assays. PMID:24852729

  17. The kinase ABL phosphorylates the microprocessor subunit DGCR8 to stimulate primary microRNA processing in response to DNA damage.

    PubMed

    Tu, Chi-Chiang; Zhong, Yan; Nguyen, Louis; Tsai, Aaron; Sridevi, Priya; Tarn, Woan-Yuh; Wang, Jean Y J

    2015-06-30

    The DNA damage response network stimulates microRNA (miRNA) biogenesis to coordinate repair, cell cycle checkpoints, and apoptosis. The multistep process of miRNA biogenesis involves the cleavage of primary miRNAs by the microprocessor complex composed of the ribonuclease Drosha and the RNA binding protein DGCR8. We found that the tyrosine kinase ABL phosphorylated DGCR8, a modification that was required for the induction of a subset of miRNAs after DNA damage. Focusing on the miR-34 family, ABL stimulated the production of miR-34c, but not miR-34a, through Drosha/DGCR8-dependent processing of primary miR-34c (pri-miR-34c). This miRNA-selective effect of ABL required the sequences flanking the precursor miR-34c (pre-miR-34c) stem-loop. In pri-miRNA processing, DGCR8 binds the pre-miR stem-loop and recruits Drosha to the miRNA. RNA cross-linking assays showed that DGCR8 and Drosha interacted with pri-miR-34c, but we found an inverse correlation between ABL-stimulated processing and DGCR8 association with pri-miR-34c. When coexpressed in HEK293T cells, ABL phosphorylated DGCR8 at Tyr(267). Ectopic expression of a Y267F-DGCR8 mutant reduced the recruitment of Drosha to pri-miR-34c and prevented ABL or Drosha from stimulating the processing of pri-miR-34c. In mice engineered to express a nuclear import-defective mutant of ABL, miR-34c, but not miR-34a, expression was reduced in the kidney, and apoptosis of the renal epithelial cells was impaired in response to cisplatin. These results reveal a new pathway in the DNA damage response wherein ABL-dependent tyrosine phosphorylation of DGCR8 stimulates the processing of selective primary miRNAs.

  18. IP Infrastructure Geolocation

    DTIC Science & Technology

    2015-03-01

    Kingdom Europe sao -br Sao Paolo, Brazil South America pry-za Pretoria, South Africa Africa Table 3.1: Vantage points that are selected for the...nearest landmark for Tn. 39 1.0 0.9 0.8 > :i 0.7 .Q .. £0.6 41 0.5 ~ .. 0.4 :; E 0.3 "’ u 0.2 0.1 0.0 -SAN - CBG - MEL - SIN - SAO ...a 0.6 e 0.. 0.5 41 ~ 0.4 :; E 0.3 a 0.2 0.1 -SAN - CBG - MEL - SIN - SAO - PRY - All 0.0 +---~~~::::::....--+--+---+-----1 o.ot 0.10

  19. A cluster analytic study of the Wechsler Intelligence Test for Children-IV in children referred for psychoeducational assessment due to persistent academic difficulties.

    PubMed

    Hale, Corinne R; Casey, Joseph E; Ricciardi, Philip W R

    2014-02-01

    Wechsler Intelligence Test for Children-IV core subtest scores of 472 children were cluster analyzed to determine if reliable and valid subgroups would emerge. Three subgroups were identified. Clusters were reliable across different stages of the analysis as well as across algorithms and samples. With respect to external validity, the Globally Low cluster differed from the other two clusters on Wechsler Individual Achievement Test-II Word Reading, Numerical Operations, and Spelling subtests, whereas the latter two clusters did not differ from one another. The clusters derived have been identified in studies using previous WISC editions. Clusters characterized by poor performance on subtests historically associated with the VIQ (i.e., VCI + WMI) and PIQ (i.e., POI + PSI) did not emerge, nor did a cluster characterized by low scores on PRI subtests. Picture Concepts represented the highest subtest score in every cluster, failing to vary in a predictable manner with the other PRI subtests.

  20. Estimating WISC-IV indexes: proration versus linear scaling.

    PubMed

    Glass, Laura A; Ryan, Joseph J; Bartels, Jared M; Morris, Jeri

    2008-10-01

    This investigation compared proration and linear scaling for estimating Wechsler Intelligence Scale for Children-Fourth Edition (WISC-IV) verbal comprehension (VCI) and perceptual reasoning (PRI) composites from all relevant two subtest combinations. Using 57 primary school students and 41 clinical referrals, actual VCI and PRI scores were highly correlated with estimated index scores based on proration and linear scaling (all rs> or =.90). In the school sample, significant mean score differences between the actual and estimated composites were found in two comparisons; however, differences between mean scores were less than three points. No significant differences emerged in the clinical sample. Results indicate that any of the two subtest combinations produced reasonably accurate estimates of actual indexes. There was no advantage of one computational method over the other.

  1. Hierarchical classification of dynamically varying radar pulse repetition interval modulation patterns.

    PubMed

    Kauppi, Jukka-Pekka; Martikainen, Kalle; Ruotsalainen, Ulla

    2010-12-01

    The central purpose of passive signal intercept receivers is to perform automatic categorization of unknown radar signals. Currently, there is an urgent need to develop intelligent classification algorithms for these devices due to emerging complexity of radar waveforms. Especially multifunction radars (MFRs) capable of performing several simultaneous tasks by utilizing complex, dynamically varying scheduled waveforms are a major challenge for automatic pattern classification systems. To assist recognition of complex radar emissions in modern intercept receivers, we have developed a novel method to recognize dynamically varying pulse repetition interval (PRI) modulation patterns emitted by MFRs. We use robust feature extraction and classifier design techniques to assist recognition in unpredictable real-world signal environments. We classify received pulse trains hierarchically which allows unambiguous detection of the subpatterns using a sliding window. Accuracy, robustness and reliability of the technique are demonstrated with extensive simulations using both static and dynamically varying PRI modulation patterns.

  2. Symmetry relations in the generalized Lorenz-Mie theory for lossless negative refractive index media

    NASA Astrophysics Data System (ADS)

    André Ambrosio, Leonardo

    2016-09-01

    In this paper we present a theoretical analysis of the generalized Lorenz-Mie theory for negative refractive index (NRI) media and spherical scatterers, extending the well-known concepts and definitions found in the literature involving dielectric or positive refractive index (PRI) particles. The consequences of a negative phase velocity and an anti-parallelism of the wave vector with respect to the Poynting vector are investigated and interpreted in this framework and, together with the symmetries found for the beam-shape coefficients when compared to the conventional PRI case, it is shown that the description of plane waves, Gaussian beams and, more generally, on-axis azimuthally symmetric waves along a NRI medium, their fields and all physical properties can be conveniently correlated with that of dielectric media once the electromagnetic response functions are replaced by their corresponding dielectric counterparts.

  3. Monitoring Stand Level Photosynthesis from Spectral Reflectance

    NASA Astrophysics Data System (ADS)

    Hilker, T.; Coops, N. C.; Hall, F. G.; Black, A. T.; Krishnan, P.; Chen, B.; Wulder, M. A.; Nesic, Z.; Huemmrich, K. F.; Middleton, E. M.; Margolis, H. A.; Drolet, G.; Cheng, Y.

    2007-12-01

    Global determination and monitoring of gross primary production (GPP) is a critical component of climate change research. On local scales, GPP can be assessed from measuring CO2 exchange above the plant canopy using tower-based eddy covariance (EC) systems. The limited footprint inherent to this method however, restricts observations to relatively few discrete areas making continuous predictions of global CO2 fluxes challenging. Recently, the advent of high resolution optical remote sensing devices has offered new possibilities to address some of the scaling issues related to GPP using approaches based on spectral reflectance. One key component for inferring GPP from remote sensing is the efficiency (e) with which plants can convert absorbed photosynthetically active radiation into biomass. Whilst recent years have seen progress determining e at the leaf level using the photochemical reflectance index PRI, little is known about the temporal and spatial requirements for upscaling PRI. For instance, satellite observations of canopy reflectance are subject to view and illumination geometry effects induced by the bi-directional reflectance distribution function (BRDF) of canopies that can confound the desired signal; however little is known about interactions between these effects and PRI. Further areas of research include dependencies of PRI on canopy structure, understorey and species composition. One potential way to investigate these requirements is using automated tower-based remote sensing platforms, facilitating spectral observations of the canopy with high spatial, temporal, and spectral resolution. The experimental setup presented herein features an automated spectral radiometer (AMSPEC) with a motor-driven probe allowing observations in a nearly full circle around the tower. Year round data are sampled every 5 sec., a full rotation is completed within 15 min. The spatial similarity to the flux-footprint allows direct comparisons with EC and micro

  4. Evolution of substrate specificity in a retained enzyme driven by gene loss.

    PubMed

    Juárez-Vázquez, Ana Lilia; Edirisinghe, Janaka E; Verduzco-Castro, Ernesto A; Michalska, Karolina; Wu, Chenggang; Noda-García, Lianet; Babnigg, Gyorgy; Endres, Michael; Medina-Ruíz, Sofía; Santoyo-Flores, Julián; Carrillo-Tripp, Mauricio; Ton-That, Hung; Joachimiak, Andrzej; Henry, Christopher S; Barona-Gómez, Francisco

    2017-03-31

    The connection between gene loss and the functional adaptation of retained proteins is still poorly understood. We apply phylogenomics and metabolic modeling to detect bacterial species that are evolving by gene loss, with the finding that Actinomycetaceae genomes from human cavities are undergoing sizable reductions, including loss of L-histidine and L-tryptophan biosynthesis. We observe that the dual-substrate phosphoribosyl isomerase A or priA gene, at which these pathways converge, appears to coevolve with the occurrence of trp and his genes. Characterization of a dozen PriA homologs shows that these enzymes adapt from bifunctionality in the largest genomes, to a monofunctional, yet not necessarily specialized, inefficient form in genomes undergoing reduction. These functional changes are accomplished via mutations, which result from relaxation of purifying selection, in residues structurally mapped after sequence and X-ray structural analyses. Our results show how gene loss can drive the evolution of substrate specificity from retained enzymes.

  5. Asia and the Pacific: U.S. Strategic Traditions and Regional Realities

    DTIC Science & Technology

    2001-01-01

    elected government. Fiji has just experienced its third coup since 1987, and ethnic tension between the indigenous Fijians and the Indian community has...overinvesting in redundant manufacturing plants . The pri- vate sector, used to growing simply by investing, gave little or no thought to the actual...petrochemical plants . Worst of all, Thai residential-property companies kept sinking money into land and property, more than it could sell. As a result

  6. Methylene Blue Enteric Mapping for Intraoperative Localization in Obscure Small Bowel Hemorrhage: Report of a New Technique and Literature Review

    DTIC Science & Technology

    2012-07-12

    controlled hypertension and hyperlipidemia, a pri- or of laparoscopic cholecystectomy, and open small bowel resection. The patient reported melena and...ities. The site of previous small bowel resection was inspected and revealed dense adhesions. A self-retaining retractor was placed and small bowel...transillumi- nation, single or multiple enterotomy(ies) for mucosal inspec- tion, and blind resection are associated with failure in up to 50 % of cases

  7. Development of the Neodymium Pentaphosphate (NPP) Laser

    DTIC Science & Technology

    1979-10-01

    about 11% in the compound EUQ {^^I^ 8^5^14" ■’■^^ terminal level is approximately 1000 cm above ground. See Figure 4 for the relevant...H IS <U 0 5 P. o e PH;3 p^ 0) I—I t/5 •H J-i > > Td Pi m <U •H (/) iH oj P,r-I O -H U S •H :3 DHPM +-> fin

  8. The Period protein homolog LIN-42 negatively regulates microRNA biogenesis in C. elegans.

    PubMed

    Van Wynsberghe, Priscilla M; Finnegan, Emily F; Stark, Thomas; Angelus, Evan P; Homan, Kathryn E; Yeo, Gene W; Pasquinelli, Amy E

    2014-06-15

    MicroRNAs (miRNAs) are small RNAs that post-transcriptionally regulate gene expression in many multicellular organisms. They are encoded in the genome and transcribed into primary (pri-) miRNAs before two processing steps that ultimately produce the mature miRNA. In order to generate the appropriate amount of a particular miRNA in the correct location at the correct time, proper regulation of miRNA biogenesis is essential. Here we identify the Period protein homolog LIN-42 as a new regulator of miRNA biogenesis in Caenorhabditis elegans. We mapped a spontaneous suppressor of the normally lethal let-7(n2853) allele to the lin-42 gene. Mutations in this allele (ap201) or a second lin-42 allele (n1089) caused increased mature let-7 miRNA levels at most time points when mature let-7 miRNA is normally expressed. Levels of pri-let-7 and a let-7 transcriptional reporter were also increased in lin-42(n1089) worms. These results indicate that LIN-42 normally represses pri-let-7 transcription and thus the accumulation of let-7 miRNA. This inhibition is not specific to let-7, as pri- and mature levels of lin-4 and miR-35 were also increased in lin-42 mutants. Furthermore, small RNA-seq analysis showed widespread increases in the levels of mature miRNAs in lin-42 mutants. Thus, we propose that the period protein homolog LIN-42 is a global regulator of miRNA biogenesis.

  9. Diazepam and its Effects on Psychophysiological and Behavioral Measures of Performance

    DTIC Science & Technology

    1987-12-01

    evoked response to patterned stimuli to an experiment designed to analyze the P300 response to a memory task requires disconnecting equipment...diagnosis. In experimental or human engineering settings, it is possible to conceive of the battery being 8 used as a standardized measure of fatigue...20mg dosage with significant effects centering pri- marily in the 15-20mg range. Since, in the current experiment , we intended to measure several of the

  10. New Directions in U.S. National Security Strategy, Defense Plans, and Diplomacy -- A Review of Official Strategic Documents

    DTIC Science & Technology

    2011-07-01

    rotor and fixed- wing aircraft . Compared to earlier plans, this posture calls for similar numbers of Army brigades, a similar number... aircraft , 98 to 109 support ships, and 3 Marine Expedi- tionary Forces that include 4 divisions and 4 aircraft wings • Department of the Air Force: 8...ISR wing -equivalents with 380 pri- mary mission aircraft , 30 to 32 airlift and air-refueling wing -equiva- lents with 33

  11. Strategic Studies Quarterly. Volume 6, Number 4, Winter 2012

    DTIC Science & Technology

    2012-01-01

    cleared" private companies and individuals and the National Security Agency ( NSA ) and other government departments like the DHS.64 The House-passed...sarily inflating the role of the DHS at the expense of the NSA , the Depart- ment of Justice, the DoD, and other stakeholders. The Rogers bill proved a...such as the Electronic Communications Pri- vacy Act and the Stored Communications Act.67 *CSA, S3414, Sec. 703(a)(1). Instead, NSA and DoD agencies

  12. Dehydroepiandrosterone Activation of G-protein-coupled Estrogen Receptor Rapidly Stimulates MicroRNA-21 Transcription in Human Hepatocellular Carcinoma Cells.

    PubMed

    Teng, Yun; Radde, Brandie N; Litchfield, Lacey M; Ivanova, Margarita M; Prough, Russell A; Clark, Barbara J; Doll, Mark A; Hein, David W; Klinge, Carolyn M

    2015-06-19

    Little is known about the regulation of the oncomiR miR-21 in liver. Dehydroepiandrosterone (DHEA) regulates gene expression as a ligand for a G-protein-coupled receptor and as a precursor for steroids that activate nuclear receptor signaling. We report that 10 nm DHEA increases primary miR-21 (pri-miR-21) transcription and mature miR-21 expression in HepG2 cells in a biphasic manner with an initial peak at 1 h followed by a second, sustained response from 3-12 h. DHEA also increased miR-21 in primary human hepatocytes and Hep3B cells. siRNA, antibody, and inhibitor studies suggest that the rapid DHEA-mediated increase in miR-21 involves a G-protein-coupled estrogen receptor (GPER/GPR30), estrogen receptor α-36 (ERα36), epidermal growth factor receptor-dependent, pertussis toxin-sensitive pathway requiring activation of c-Src, ERK1/2, and PI3K. GPER antagonist G-15 attenuated DHEA- and BSA-conjugated DHEA-stimulated pri-miR-21 transcription. Like DHEA, GPER agonists G-1 and fulvestrant increased pri-miR-21 in a GPER- and ERα36-dependent manner. DHEA, like G-1, increased GPER and ERα36 mRNA and protein levels. DHEA increased ERK1/2 and c-Src phosphorylation in a GPER-responsive manner. DHEA increased c-Jun, but not c-Fos, protein expression after 2 h. DHEA increased androgen receptor, c-Fos, and c-Jun recruitment to the miR-21 promoter. These results suggest that physiological concentrations of DHEA activate a GPER intracellular signaling cascade that increases pri-miR-21 transcription mediated at least in part by AP-1 and androgen receptor miR-21 promoter interaction.

  13. Cellular Effects of Endotoxin in Vitro: Mobility of Endotoxin in the Plasma Membrane of Hepatocytes and Neuroblastoma Cells

    DTIC Science & Technology

    1985-01-01

    1111 E115Ew coCelUlar effecu of eratlotxin in vivat mobility o( ’-Hxn ate iý o memtbrane 4f heptoc-tes wid onewobuztomn ceflh 0) Laurie Kilpatrick...National 2 • D. iber. W. and 3runeya, FLU. (194) in Muuetods o Enrzyu•m Analyi (Uagmeyer. KU. ad.) pp. Institutes of Health. 23V-27 3L Academi PrI. New York

  14. Clinical Investigation Program.

    DTIC Science & Technology

    1979-10-01

    Evaluation of Specific IgE in Nasal Secretions of Patients with Seasonal Rhinitis and Negative Skin Tests. American Academy of Allergy , New Orleans, LA...52 R.0 Immunotherapy 4 Pri ncipal FY Investigator Title Init. Status Page Nickles, Lactic Acid Metabolism in Laboratory 78 C,Pr,SP 53 D. J. Models...Chemotherapy with BCG 79 T 58 W. C. Immunotherapy in High Risk Melanoma Patients Waterfield, Naloxone Prior to Chemotherapy to 79 T 59 W. C. Prevent

  15. Genetic and Physiological Studies of Bacillus anthracis Related to Development of an Improved Vaccine

    DTIC Science & Technology

    1987-07-01

    resistance plasmid pBC16 to the Bacillus species anthracis, cereus, K -21- ’./ licheniformis , megateritm, pumilus, subtilis, and thuringiensis. Evidence...Q 1 FILE (PRY AD _ _ GENETIC AND PHYSIOLOGICAL STUDIES OF BACILLUS ANTHRACIS RELATED TO DEVELOPMENT OF AN IMPROVED VACCINE ANNUAL PROGRESS REPORTDTIC...Physiological Studies of Bacillus antihviCls Related to Development /1 of An Improved Vaccine S 12. PERSONAL AUTHOR(S)Cuts .Thre 7 13.. ~ ~ ~ ~ ~ 13, T1EO EOT1b

  16. Reflections on Software Agility and Agile Methods: Challenges, Dilemmas, & the Way Ahead

    DTIC Science & Technology

    2005-05-11

    Mellon University 10 Research Team Richard Baskerville and Balasubramanian Ramesh Department of Computer Information Systems, Georgia State University...University 38 References Agile Manifesto. http://agilemanifesto.org/ Baskerville , R., Pries-Heje, J., Levine, L., & Ramesh, B. (2005). The high speed...balancing game: How software companies cope with Internet speed. Scandinavian Journal of Information Systems 16, 11-54. Baskerville , R., Levine, L

  17. Medic - Abdominal Pain: A Decision Support Program for the Management of Acute Abdominal Pain. (User’s Manual)

    DTIC Science & Technology

    1989-10-11

    diagnosis, treatment plan with specific drug regimens as indicated, probable course with treatment, and possible complications and their management. Type "N...stress, cigarette smoking, alcohol abuse, and many drugs have been cited as risk factors for PRiD. Some drugs may alter the stoach’s protective lining...accouplished with a regimen of antacids and a relatively new class of drugs , the H-2 blockers, that inhibit acid production. Food adequately buffers

  18. Military Culture: A Paradigm Shift? (Maxwell Paper, Number 10)

    DTIC Science & Technology

    1997-02-01

    status (i.e., sexual orientation ) and actual sex - ual conduct. Although a few individual gays legally chal - lenged their dismissal based upon DOD policy...47 The court ruled that the military’s homosexual ban violates New York’s ban on discrimination on the basis of sexual orientation by any state agency... sexual orientation is considered a pri - vate matter and not grounds for discharge. In contrast, RAND’s 1993 study (a 518-page comprehen - sive analysis

  19. Mexico-U.S. Relations: Issues for Congress

    DTIC Science & Technology

    2010-09-02

    Revolution (PRD) alliance candidates won three states long held by the PRI (Oaxaca, Puebla , and Sinaloa). On June 28, 2010, armed gunmen assassinated...Calderón to the White House for a state visit. President Obama praised Calderón’s “ vision and courage,” and said that his visit signaled “another step...claimed victory in nine states, but lost three states it had previously controlled (Sinaloa, Oaxaca, and Puebla ) to candidates representing alliances of

  20. Water Quality Criteria for White Phosphorus

    DTIC Science & Technology

    1987-08-01

    dissolved oxygen, reduction in pH ( acidification ), and increased deposition of fine particulates. White phosphorus is pri- marily transformed in air...that apparently control the distribution and abundance of some biota in the lake , low pH and low dissolved oxygen, are associated with decaying...water, and soil by oxidation. In water, the oxidation rate can be affected by dissolved oxygen concentration, temp- erature, pH , salinity, and the

  1. Reviewing the effect of reflexology on the pain and certain features and outcomes of the labor on the primiparous women

    PubMed Central

    Valiani, Mahboubeh; Shiran, Elaheh; Kianpour, Maryam; Hasanpour, Marziyeh

    2010-01-01

    BACKGROUND: Reflexology is one of the non-pharmacological pain relief methods, and since it is a non-invasive, inexpensive and applicable technique, it can be used by a skilled and trained midwife. This study aimed to review the effect of reflexology on the pain and outcomes of the labor. METHODS: In this quasi-experimental study, 88 primiparous mothers referred to selected hospitals of Isfahan for vaginal delivery were selected using simple random sampling method and then randomized in two groups. Data collection tools were the demographic data questionnaire, profile and outcomes of the labor and the short-form of the McGill Questionnaire for Pain Rating Index (PRI) assessment. The intervention was general and specific reflexology in the active phase of labor. PRI was assessed before the intervention and four times after the intervention (3-5 cm, 6-8 cm and 9-10 cm dilatations and second stage of labor. RESULTS: There was no significant difference between groups before intervention. In the reflexology group, there was a significant difference between the PRI before and after the 4 stages intervention (p < 0.001). PRI was different significantly between studied groups after intervention (p < 0.001). The length of active phase of labor was different significantly between the two groups; but this difference was not significant during the second (p = 0.29), and the third (p = 0.27) stages. The difference between the 1st minute and the 5th minute Apgar score (p < 0.001) and rate of hemorrhage between the two groups were different significantly (p = 0.02). CONCLUSIONS: Reflexology can lead to decrease in the labor pain. Therefore, regarding to the safety of this technique, it can be replaced as an alternative for pharmacological methods. PMID:22069404

  2. Impacts of Sigma Coordinates on the Euler and Navier-Stokes Equations using Continuous Galerkin Methods

    DTIC Science & Technology

    2009-03-01

    Density . 6 B. X-Z TO X-σZ COORDINATE SYSTEM TRANSFORM . . . . 7 1. Gal-Chen and Somerville . . . . . . . . . . . . . . . . . . 7 2. Basic...system [3] use a variation of the x-σ coordinate transformation. By studying the works of Gal-Chen and Somerville [4] and analyzing the transforma...now used in contemporary NWP models (i.e. this is the formulation used by WRF) and uses density, momentum, and potential temperature as the pri- mary

  3. Relating the Biogeochemistries of Zinc, Cobalt, and Phosphorus to Phytoplankton Activities in the Sea

    DTIC Science & Technology

    2006-06-01

    working hours a blast! Thanks to the windsurf- ing/baby crowd: Chris, Steph, Nick, Amy, Dave, Kate, Claudia, Jason, Lara, Henrick, Mary - Louise, and Jeff...Thanks to the Somerville boys who embraced me (read: began teasing me) immediately and introduced me to many an interesting Boston/Cambridge haunt...134-146. MARTIN, J. H., S. E. FITZWATER, R. M. GORDON, C. N. HUNTER, and S. J. TANNER. 1993. Iron, pri- mary production and carbon-nitrogen flux studies

  4. Describing the Elephant: Framing a Discussion on Command and Control

    DTIC Science & Technology

    2014-08-01

    operations in support of combat- ant commanders. A master navigator with more than 4,200 flying hours, pri- marily in the RC-135 Rivet Joint and E-8C JSTARS...that term varies across the levels of war; by service, mediums, career fields, and platforms; and across the realms of academics, joint -requirements...the battlespace. Although designed to be platform agnostic, most of the articles incorporate recent experience with the Joint Sur- veillance Target

  5. Electrochemical, In Situ Raman Spectroscopic, and Conductivity Studies of Polypyrrole Incorporating Large Size Anions: Conducting Nature of Reduced Form

    DTIC Science & Technology

    1990-05-21

    oxidized (conducting) and reduced (nonconducting).I On the other hand, in our previous report a Pry thin-film incorporating copper phthalocyanine ...tetrasulfonates (PPy-MPcTs), copper phthalocyanine monosulfonate (PPy-CuPcS), copper porpyrin tetrasulfonate (PPy-CuPrTs), and a couple of anionic...Acetonitrile (MeCN) was purified by the method reported by Forcier and Olver.14 The copper phthalocyanine -3,4’,4’’,4’’’-tetrasulfonic acid tetrasodium

  6. Effects of Aminoguanidine on Pre- and Post-Irradiation Regional Cerebral Blood Flow, Systemic Blood Pressure and Plasma Histamine Levels in the Primate,

    DTIC Science & Technology

    1991-01-01

    alone had a slight but significant hypotensive effect. 4Introduction ated the effects of HA released after irradiation Studies have shown elevated...ndued The metabolic pathways of HA in nonhuman pri- hypotension 12) and in postirradiation reduced mates have been studied less extensively than...of AG treatment on metric method that has been successfully employed these three parameters in irradiated and sham-irra- in similar studies 13, 4. 15

  7. Zeta potential response of human erythrocyte membranes to the modulators of Gardos channel activity under low rate β-radiation.

    PubMed

    Zhirnov, V V; Iakovenko, I N; Voitsitskiy, V M; Khyzhnyak, S V; Zubrikova-Chugainova, O G; Gorobetz, V A

    2015-12-01

    Tsel' raboty. Izuchenie reaktsii dzeta potentsiala (DP) membran éritrotsitov cheloveka pri modifikatsii aktivatorami i blokatorami funktsional'nogo sostoianiia Ca2+-zavisimykh kalievykh kanalov v pole radioizotopnogo izlucheniia 90Sr/90Y maloi moshchnosti.Materialy i metody. Éritrotsity poluchali iz donorskoi krovi. DP vychisliali po poluchennomu znacheniiu élektroforeticheskoi podvizhnosti kletok. V kletochnye suspenzii predvaritel'no vnosili issleduemye veshchestva, a zatem alikvoty rastvora 90Sr(NO3)2, chtoby poluchit' konechnuiu kontsentratsiiu 44,4⋅kBk⋅l-1.Rezul'taty. Radioizotopnoe izluchenie 90Sr/90Y (RI, 15 mkGr/ch) povyshaet absoliutnoe znachenie DP (DPab) membran éritrotsitov i ego deistvie iavliaetsia obratimym. Éto ukazyvaet na to, chto éffekt oposreduetsia neioniziruiushchei komponentoi RI. Dibutiril-tsAMF v diapazone kontsentratsii 1–100 mkM dozonezavisimo povyshaet DPab membran éritrotsitov, no RI ne usilivaet ego éffekt. Anaprilin v kontsentratsiiakh 10 i 100 mkM dozonezavisimo povyshaet DPab. Éffekt maksimal'noi kontsentratsii anaprilina (100 mkM) – snizhaetsia RI. Klotrimazol v diapazone kontsentratsii 0,1–10 mkM povyshaet DPab membran éritrotsitov otnositel'no kontrolia, togda kak ego maksimal'naia kontsentratsiia – snizhet, a minimal'naia – dostoverno ne vliiaet na étot pokazatel'. Deistvie klotrimazola na DP pri kontsentratsiiakh 10–100 mkM otmeniaetsia RI, no ne izmeniaetsia pri 0,1–1 mkM. Nitrendipin vo vsem diapazone kontsentratsii dozonezavisimo povyshaet DPab membran éritrotsitov, a RI usilivaet ego deistvie. Vyvody. 1. Dlia ioniziruiushchei komponenty radionuklidnogo izlucheniia sushchestvuet porog biologicheskogo deistviia na kletki, opredeliaemyi éffektivnost'iu ikh antioksidantnoi sistemy.2. Pri moshchnosti doz nizhe porogovoi deistvie radioizotopnogo izlucheniia oposreduetsia ego neioniziruiushchei komponentoi i iavliaetsia obratimym, a poétomu opredeliaetsia tol'ko v pole izlucheniia.

  8. Glucose-6-Phosphate Dehydrogenase Deficiency and Haemoglobinophaties in Resident of Arso PIR, Irian Jaya

    DTIC Science & Technology

    1990-01-01

    6-PD associated with the use of pri- deficiency and hemoglobinopathy occur14 . maquine as a tissue schizonto- There are indictions that G-6-PD defi... hemoglobinopathies . 6 Irianese were found to be G-6- I’D def icient. G-6-PD levels in these individuals ranged from 4-50% of minimum normal values. 5 cases of... hemoglobinopathy were detected. 1 Irianese had a hemoglobinopathy consistent with hemog tobin-Lepore Hollandia. 3 Javanese subjects expressed a variant

  9. US EPA, Pesticide Product Label, , 11/05/1985

    EPA Pesticide Factsheets

    2011-04-21

    ... 1'U 'pr.y al ,.;,.r •••• 1.11 ~I •••• CJ1IIS, ".I ••• ,.S"',6r •• ,y S,.I, I Pitt Pill it,. ... tUAlU, .~.,vl~ ::"ls""tlr~'.'ltl'_ t\\l'J\\~' ptlth~ra diet.oc" t Pow:~r,' "ll'jtli ...

  10. Southeast Asia Report

    DTIC Science & Technology

    1987-03-13

    monopolies" ( naturally one company for each field is more efficient) and it is not so good to leave such mononc lies to the private sector...However, in certain areas where no com- panies as natural monopolies are required, the pri- vate sector can play a competitive role and such competition...the smaller number of remaining (undivisible) votes is national rather than regional in nature . This means it will be done only for seats contested

  11. Equivalence Testing for FORTRAN Mutation System Using Data Flow Analysis.

    DTIC Science & Technology

    1981-12-01

    phaselI ; end ; -- end of data-flow-analysis procedure phasel ; var g : graph -number h : header-node-number £ x : exit-edge-number 1 : edge-from...do begin pri] : pp PB[i] D[i] := (DP PB+I]) + DB[i; end end end ; end ; -- end of phaseT procedure phaselT ; var g : graph -number h : header-node

  12. Automated Performance Monitoring and Assessment for DCS Digital Systems

    DTIC Science & Technology

    1980-07-01

    75,000 429.000 212 HILLINGDON 76,000 429,000 222 6018 79E Table 3-5. Fault Detection/Isolation Storage Requirements (Sector) DATA STORAGE PRiOGRAM STORAGE...NUMBER SECTOR (BYTES) (BYTES) OF EQUIPMENT MODEL 93,000 429,000 194 STUTTGART 268,000 429,000 1,227 HILLINGDON 160,000 429,000 610 LANGERKOPF 305,000

  13. Our Own Back Yard: Mexico and U.S. National Security

    DTIC Science & Technology

    2007-11-02

    Mexico into a civil war. Instead, he withdrew from the PRI to start a new political party, the Party of the Democratic Revolution (PRD) , which...attacked and captured several towns in the 12 southern Mexican state of Chiapas22. Chiapas was mainly inhabited by Mayan Indians who have been the...Assuming that appropriate legislation were enacted which would allow the Army to lawfully engage in this essentially civil , domestic law enforcement

  14. Through Life Management of Naval Gas Turbines for Extended Service Lives and Reduced Lifetime Costs

    DTIC Science & Technology

    2003-02-01

    Symposium Partie A - Developpements dans le domaine de l’aeroacoustique et I’hydroacoustique numeriques ] [Symposium Partie B ... To order the complete...and Belgian Reduction Strategies developed by the UK Ministry of Defence in Navies, the Olympus operates in combination with direct acting support of... STRATEGIES IN REDUCING THROUGH LIFE COSTSTuRn! TIE DELIVERY PRI GRAMME SIMULATION INCLUDES Current strate2v: TAKE 91 ATES AND RANDOM FAILURES SERVICEABLE

  15. Evolution of substrate specificity in a recipient's enzyme following horizontal gene transfer.

    PubMed

    Noda-García, Lianet; Camacho-Zarco, Aldo R; Medina-Ruíz, Sofía; Gaytán, Paul; Carrillo-Tripp, Mauricio; Fülöp, Vilmos; Barona-Gómez, Francisco

    2013-09-01

    Despite the prominent role of horizontal gene transfer (HGT) in shaping bacterial metabolism, little is known about the impact of HGT on the evolution of enzyme function. Specifically, what is the influence of a recently acquired gene on the function of an existing gene? For example, certain members of the genus Corynebacterium have horizontally acquired a whole l-tryptophan biosynthetic operon, whereas in certain closely related actinobacteria, for example, Mycobacterium, the trpF gene is missing. In Mycobacterium, the function of the trpF gene is performed by a dual-substrate (βα)8 phosphoribosyl isomerase (priA gene) also involved in l-histidine (hisA gene) biosynthesis. We investigated the effect of a HGT-acquired TrpF enzyme upon PriA's substrate specificity in Corynebacterium through comparative genomics and phylogenetic reconstructions. After comprehensive in vivo and enzyme kinetic analyses of selected PriA homologs, a novel (βα)8 isomerase subfamily with a specialized function in l-histidine biosynthesis, termed subHisA, was confirmed. X-ray crystallography was used to reveal active-site mutations in subHisA important for narrowing of substrate specificity, which when mutated to the naturally occurring amino acid in PriA led to gain of function. Moreover, in silico molecular dynamic analyses demonstrated that the narrowing of substrate specificity of subHisA is concomitant with loss of ancestral protein conformational states. Our results show the importance of HGT in shaping enzyme evolution and metabolism.

  16. ONR Far East Scientific Information Bulletin

    DTIC Science & Technology

    1990-09-01

    Industry * The Japan Institute of Invention and ° Software Maintenance Engineering Innovation , Kyoto Branch Facility The building in which the workshop o...also be sought for the participation of pri- mentally Resistant Advanced Materials" vatesector businesses . Plans call for a capi- which will be taken... business is related to the nuclear to a standard TV monitor. A PC program industry , but at present CRC has no pro- has been prewritten onto the CD and

  17. NUCLEAR ESPIONAGE: Report Details Spying on Touring Scientists.

    PubMed

    Malakoff, D

    2000-06-30

    A congressional report released this week details dozens of sometimes clumsy attempts by foreign agents to obtain nuclear secrets from U.S. nuclear scientists traveling abroad, ranging from offering scientists prostitutes to prying off the backs of their laptop computers. The report highlights the need to better prepare traveling researchers to safeguard secrets and resist such temptations, say the two lawmakers who requested the report and officials at the Department of Energy, which employs the scientists.

  18. Emerging Role of the Army Family Physician in Primary Health Care Delivery.

    DTIC Science & Technology

    1976-12-13

    IN PRI1Y~?f IfALTh CARE DELIVERY BY COLONEL DAVID G. LbANE VEDICAL CORPs ~~~ CORRESPONDING COURSE _ _ _ _ _ _ _ _ _ _ _ ~ AR...Physician in Primary Health Care Delivery. Research Project 6. PERFORMING ORG. REPORT NUMBER 7. AUTHORft ) 8. CONTRACT OR GRANT NUMBER(.) Doane, David G...influence of specialists of all kinds. Emphasis was placed on research , medical education, government grants, publishing H and training of super

  19. The Climate in the Region of Djerdap (The Iron Gate),

    DTIC Science & Technology

    1982-01-21

    this report. LITERATURE (1) Milosavljevi, K. und M.: Uticaj orografije na raspodeu pad ina u ZuWto- noj Srbij. Zbornzk radova Poljoprivrednog fakuiteta...i-i, (ion). (2) MilosavleviO K. und M.: Raspodela padavina u Isto~noj Srbiji pri vero- vima iz severozapadnog kvadranta. Zbornik meteoroakTh i...hidro1ikIh radova br. 1. Savezm hidrometeorolo~ki zavod, Bpograd, 1-9, (1963). 3. K. Milosavljevic, M. Milosavljevic. Effect of the Transylvanian Alps on

  20. Technical and Regulatory Requirements for Enhanced In Situ Bioremediation of Chlorinated Solvents in Groundwater

    DTIC Science & Technology

    1998-12-23

    the toluene-specific organisms that can degrade TCE (Shields et al., 1991). Another is burkholderia cepacia PRI 301e, a toluene oxidizing bacterium... Burkholderia Cepacia PR1301, in Alleman, B.C., and Leeson, A., chairs, In Situ and On-Site Bioremediation Symposium, v. 4, p.513-518. Batelle Press...Altered Burkholderia (Pseudomonas) cepacia G4 and PR1: Environmental Science and Technology, v. 30, p. 2045-2052. National Research Council, 1997

  1. Concepts for Sensor Data Fusion to Detect Vegetation Stress and Implications on Ecosystem Health Following Hurricane Katrina

    DTIC Science & Technology

    2008-09-01

    Description NDVI Narrow-band Normalized Difference Vegetation Index (can check all possible two-band combinations, and determine best band combinations...were calculated for each site. The band indices were: • NDVI (Hyperion bands 45 & 33) (Figure 2) • NDWI (Hyperion bands 51 & 109) • PRI (Hyperion...between categories for these groups. NDVI and NDWI were very close to achiev- ing a significant result, and were still particularly good at separating two

  2. The Lot Scheduling Problem in the Hierarchy of Decision Models.

    DTIC Science & Technology

    1986-08-01

    of iterationsi lead = 5; Ilead time for deliveryj TYPE index = integer; parray = array [1..p] of real; VAR mdata: text; )input file r : parray ; Idemand...ratei su : parray ; Isetup timel pr : parray ; 1production ratei ru : parray ; Irelative utilization - r/pri h : parray ; Iholding cost after processingi...hb : parray ; 1holding cost before processingi sd : parray ; Istandard deviation of delivery timer t : parray ; Icycle length - time between production

  3. Morin, Jean-Baptiste (1583-1656)

    NASA Astrophysics Data System (ADS)

    Murdin, P.

    2000-11-01

    Doctor, alchemist and astrologer, born in Villefranche, Beaujolais, France, became professor of mathematics at the Collège Royal, published a defense of ARISTOTLE, attacked GALILEO, being convinced that the Earth was fixed in space. Morin proposed an impractical method to solve the longitude problem, based on measuring absolute time by the position of the Moon. He put the method in for a pri...

  4. Screening of genes involved in isooctane tolerance in Saccharomyces cerevisiae by using mRNA differential display.

    PubMed

    Miura, S; Zou, W; Ueda, M; Tanaka, A

    2000-11-01

    A Saccharomyces cerevisiae strain, KK-211, isolated by the long-term bioprocess of stereoselective reduction in isooctane, showed extremely high tolerance to the solvent, which is toxic to yeast cells, but, in comparison with its wild-type parent, DY-1, showed low tolerance to hydrophilic organic solvents, such as dimethyl sulfoxide and ethanol. In order to detect the isooctane tolerance-associated genes, mRNA differential display (DD) was employed using mRNAs isolated from strains DY-1 and KK-211 cultivated without isooctane, and from strain KK-211 cultivated with isooctane. Thirty genes were identified as being differentially expressed in these three types of cells and were classified into three groups according to their expression patterns. These patterns were further confirmed and quantified by Northern blot analysis. On the DD fingerprints, the expression of 14 genes, including MUQ1, PRY2, HAC1, AGT1, GAC1, and ICT1 (YLR099c) was induced, while the expression of the remaining 16 genes, including JEN1, PRY1, PRY3, and KRE1, was decreased, in strain KK-211 cultivated with isooctane. The genes represented by HAC1, PRY1, and ICT1 have been reported to be associated with cell stress, and AGT1 and GAC1 have been reported to be involved in the uptake of trehalose and the production of glycogen, respectively. MUQ1 and KRE1, encoding proteins associated with cell surface maintenance, were also detected. Based on these results, we concluded that alteration of expression levels of multiple genes, not of a single gene, might be the critical determinant for isooctane tolerance in strain KK-211.

  5. Cuba: Clearing Perilous Waters?

    DTIC Science & Technology

    1996-01-01

    PRI Institutional Revolutionary Party ( Mexico ) UN United Nations UNEAC Union of Writers and Artists Yummies Young, upwardly mobile communists XIX...ease the country’s food crisis. Meanwhile, during 1995, the government succeeded in instilling greater fiscal discipline and reducing inflationary...programs that benefit the entire population.29 Whether this latest fiscal reform is also intended to curb and control private en- trepreneurial

  6. A novel role for GSK3β as a modulator of Drosha microprocessor activity and MicroRNA biogenesis.

    PubMed

    Fletcher, Claire E; Godfrey, Jack D; Shibakawa, Akifumi; Bushell, Martin; Bevan, Charlotte L

    2016-10-23

    Regulation of microRNA (miR) biogenesis is complex and stringently controlled. Here, we identify the kinase GSK3β as an important modulator of miR biogenesis at Microprocessor level. Repression of GSK3β activity reduces Drosha activity toward pri-miRs, leading to accumulation of unprocessed pri-miRs and reduction of pre-miRs and mature miRs without altering levels or cellular localisation of miR biogenesis proteins. Conversely, GSK3β activation increases Drosha activity and mature miR accumulation. GSK3β achieves this through promoting Drosha:cofactor and Drosha:pri-miR interactions: it binds to DGCR8 and p72 in the Microprocessor, an effect dependent upon presence of RNA. Indeed, GSK3β itself can immunoprecipitate pri-miRs, suggesting possible RNA-binding capacity. Kinase assays identify the mechanism for GSK3β-enhanced Drosha activity, which requires GSK3β nuclear localisation, as phosphorylation of Drosha at S(300) and/or S(302); confirmed by enhanced Drosha activity and association with cofactors, and increased abundance of mature miRs in the presence of phospho-mimic Drosha. Functional implications of GSK3β-enhanced miR biogenesis are illustrated by increased levels of GSK3β-upregulated miR targets following GSK3β inhibition. These data, the first to link GSK3β with the miR cascade in humans, highlight a novel pro-biogenesis role for GSK3β in increasing miR biogenesis as a component of the Microprocessor complex with wide-ranging functional consequences.

  7. Clopidogrel metaboliser status based on point-of-care CYP2C19 genetic testing in patients with coronary artery disease.

    PubMed

    Erlinge, David; James, Stefan; Duvvuru, Suman; Jakubowski, Joseph A; Wagner, Henrik; Varenhorst, Christoph; Tantry, Udaya S; Brown, Patricia B; Small, David; Moser, Brian A; Sundseth, Scott S; Walker, Joseph R; Winters, Kenneth J; Gurbel, Paul A

    2014-05-05

    We compared results obtained with the Nanosphere Verigene® System, a novel point-of-care (POC) genetic test capable of analysing 11 CYP2C19 variants within 3 hours, to an established, validated genotyping method (Affymetrix™ DMET+; reference assay) for identifying extensive and reduced metabolisers of clopidogrel. Based on genotyping, patients (N=82) with stable coronary artery disease on clopidogrel 75 mg daily were defined as extensive metabolisers (*1/*1, *1/*17, *17/*17), reduced metabolisers (*1/*2, *1/*8, *2/*2, *2/*3), or of indeterminate metaboliser status (*2/*17). Pharmacokinetic exposure to clopidogrel's active metabolite and pharmacodynamic measures with P2Y12 reaction units (PRU) (VerifyNow®P2Y12 assay) and VASP PRI (PRI) were also assessed. There was a 99.9% overall concordance of marker-level data between the Nanosphere Verigene and DMET+ systems in identifying the CYP2C19 variants and 100% agreement in classifying the patients as extensive (n=59) or reduced metabolisers (n=15). Extensive metabolisers had significantly higher active metabolite exposure than reduced metabolisers (LS means 12.6 ng*h/ml vs 7.7 ng*h/ml; p<0.001). Extensive metabolisers also had lower PRU (LS means 158 vs 212; p=0.003) and VASP PRI (LS means 48% vs 63%, p=0.01) compared to reduced metabolisers. Rates of high on-treatment platelet reactivity were higher in reduced metabolisers compared to extensive metabolisers (VASP PRI ≥ 50%: 79% vs 47%; PRU >235: 33% vs 16%). The Nanosphere Verigene CBS system identified 11 CYP2C19 alleles in less than 3 hours with a high degree of accuracy when compared to a conventional method, and was further validated against pharmacokinetic and pharmacodynamic phenotypes.

  8. Whither Elite Cohesion in Mexico: A Comment

    DTIC Science & Technology

    1988-11-01

    the problem of elite cohesion, including the mechanisms-- especially the camarilla system--whereby balance and equilibrium, control and cooptation...Generacicnes: Los Protagonistas de Ia Reforma y la Revoluci(n Mexicana, Secretaria de Educacion Pblica, Consejo Nacional de Fomento Educat ivo, Mexico City...loyalty and discipline toward the system as a whole, and especially its apex, the president, and its key institution, the PRI. All this looks different

  9. Novel Target for Ameliorating Pain and Other Problems after SCI: Spontaneous Activity in Nociceptors

    DTIC Science & Technology

    2014-10-01

    Pain gests that interventions preferentially targeting nociceptive pri- mary afferent neurons, such as antagonists of Nav1.8 (Jarvis et al., 2007) or... pain afflicts a majority of SCI patients (Dijkers et al., 2009). This pain is typically divided into two major classes, nociceptive and neuropathic...Bryce et al., 2012). The largest prospective pain study of patients with traumatic SCI found that moderate-to-severe nociceptive and neuro- pathic pain

  10. Journal of Special Operations Medicine, Volume 3, Edition 4

    DTIC Science & Technology

    2003-01-01

    much discussion on the hemostatic agents deployed into the conflicts. It turns out that the Fibrin Dressing was not used and that speaks very highly...and QA agents to assure the readiness of SEAL Corpsmen. Our pri- mary responsibilities to the line commanders we serve are force protection...Fall 03 37 SIGNAL & SURVIVAL MODULE Flare gun and three flares Orange hand-held smoke flare Signal mirror Whistle Compass Knife Matches Pencil and pad

  11. Pattern-Theoretic Foundations of Automatic Target Recognition in Clutter

    DTIC Science & Technology

    2006-11-30

    area has continued past the September 2006 end date via discretionary funds provided to Aaron Lanterman through the Demetrius T. Paris Junior...support to continue the work past August 2006 provided by the Demetrius T. Paris Professorship. Pri- mary developer of ATR theory and algorithms for target...Oustanding Junior Teacher Award (2006), as voted on by the senior class. A.D. Lanterman, named the Demetrius T. Paris Junior Professor beginning in

  12. Finance Near-Term Technical Architecture for the Defense Information Technology Services Organization. Version 1.1.

    DTIC Science & Technology

    1992-11-01

    Government agencies. Gateways to Sprint’s Meeting Channel and AT&T’s Accunet Reserved Digital Services allow for meeting, with other national and...weaknesses, and provide varying degrees of video and audio quality. Facilities are connected by either dedicated digital lines and/or switched digital ... services . Standard communication interfaces include ISDN, using both the Sasic Rate Interface (BRI) and the Primary Rate Interface (PRI). Most systems

  13. The Fate of the Civilian Surge in a Changing Environment

    DTIC Science & Technology

    2016-08-01

    stabilization (R&S) lines of effort in favor of more tra- ditional diplomacy and development assistance pri- orities. This period of relative peace allow policy...and de- velopment assistance priorities. Instead, policy mak- ers should use this period of relative peace to reflect on lessons learned and...collaboration. Instead, I was surprised to find a relatively rich – but rapidly attenuating – mix of interagency authorities, professional relationships

  14. New Eye for the Navy: The Origin of Radar at the Naval Research Laboratory

    DTIC Science & Technology

    1981-09-29

    verifying Maxwell’s theory, worked pri- marily with high frequencies. By the late 1890s, however, Guglielmo Marconi and other men who had become...290. 40 Guglielmo Marconi , Kadio Telegraphy," Proceedings of the Instiute of Radio Engineers 10 (1922) 237 Marconi later became in- volved in the...American Society of Na- val Engineers66 (1954): 9-41. Marconi , Guglielmo , "Radio Telegraphy," Proceedings of the Institute of Radio Engineers 10

  15. Dollar Summary of Prime Contract Awards by Contractor, State or Country, and Place, FY83, Part 3 (Planning Design & Research Engr-Zytron Corp.)

    DTIC Science & Technology

    1983-01-01

    PROCESSING INC BELGIUM 126 126 128 126 PRECISION COMPONENTS DANBURY CONN 30 36 30 30 PRI"E-CONTRACTS BY CONTRACTOR, STATE. AND CITY - (OCT 82 - SEP 83...INC CINCINNATI OHIO 309 309 309 309 PROCEDYNE ASSOCIATES INC NEW BRUNSWICK NEW JERSEY 38 38 38 38 PROCESS CONSTRUCTORS INC PHILADELPHIA PA 67 67 67 67... PROCESS CONTROL TECHNOLOGY INC KELLY AFB TEXAS 206 206 206 206 PROCESS ENSINEERINQ INC NEWINGTON NH 205 205 205 205 PRIME-CONTRACTS BY CONTRACTOR

  16. Mexico: Its Economic, Political and Social Situation and Its Implications for the United States

    DTIC Science & Technology

    1991-04-25

    Arerican Research Review. Vol. XXV Number 3, 1990. Reynolds, Clark W. and Tello , Carlos . U.S.-Mexico Relations: Econor’ic and Social Aspects. Stanford...SALINAS REFORM AGENDA. The nomination of Carlos Salinas de G’:,rtari in October 1987 as the PRI’s presidential candidate precipitated the first...8217, for Me::.:.ican communities abroad. Mexican President, Carlos Salinas visited Washington in June 1990, and on that occasion he discused wit.h President

  17. Dehydroepiandrosterone Activation of G-protein-coupled Estrogen Receptor Rapidly Stimulates MicroRNA-21 Transcription in Human Hepatocellular Carcinoma Cells*

    PubMed Central

    Teng, Yun; Radde, Brandie N.; Litchfield, Lacey M.; Ivanova, Margarita M.; Prough, Russell A.; Clark, Barbara J.; Doll, Mark A.; Hein, David W.; Klinge, Carolyn M.

    2015-01-01

    Little is known about the regulation of the oncomiR miR-21 in liver. Dehydroepiandrosterone (DHEA) regulates gene expression as a ligand for a G-protein-coupled receptor and as a precursor for steroids that activate nuclear receptor signaling. We report that 10 nm DHEA increases primary miR-21 (pri-miR-21) transcription and mature miR-21 expression in HepG2 cells in a biphasic manner with an initial peak at 1 h followed by a second, sustained response from 3–12 h. DHEA also increased miR-21 in primary human hepatocytes and Hep3B cells. siRNA, antibody, and inhibitor studies suggest that the rapid DHEA-mediated increase in miR-21 involves a G-protein-coupled estrogen receptor (GPER/GPR30), estrogen receptor α-36 (ERα36), epidermal growth factor receptor-dependent, pertussis toxin-sensitive pathway requiring activation of c-Src, ERK1/2, and PI3K. GPER antagonist G-15 attenuated DHEA- and BSA-conjugated DHEA-stimulated pri-miR-21 transcription. Like DHEA, GPER agonists G-1 and fulvestrant increased pri-miR-21 in a GPER- and ERα36-dependent manner. DHEA, like G-1, increased GPER and ERα36 mRNA and protein levels. DHEA increased ERK1/2 and c-Src phosphorylation in a GPER-responsive manner. DHEA increased c-Jun, but not c-Fos, protein expression after 2 h. DHEA increased androgen receptor, c-Fos, and c-Jun recruitment to the miR-21 promoter. These results suggest that physiological concentrations of DHEA activate a GPER intracellular signaling cascade that increases pri-miR-21 transcription mediated at least in part by AP-1 and androgen receptor miR-21 promoter interaction. PMID:25969534

  18. Bio/Nano Electronic Devices and Sensors

    DTIC Science & Technology

    2008-10-01

    were developed of high thermoluminescence efficiency 15. SUBJECT TERMS 16. SECURITY CLASSIFICATION OF: a. REPORT b. ABSTRACT c. THIS PAGE 17...around 65% in 1 mm thick samples. Materials fur thermoluminescent dosi^Pry. ^P Manganese-doped yttrium aluminum perovskite (YAP) single crystals... thermoluminescence efficiency of the crystals was shown, which can be used for thermoluminescent dosimetry of ionizing radiation. From the technological point of

  19. Assessing Egyptian Public Support for Security Crackdowns in the Sinai

    DTIC Science & Technology

    2015-02-01

    January 2014, noted: Over the past year, Israel and Egypt have used lit- tle-known, legally permissible understanding—the Agreed Activities Mechanism—to...terrorist groups if such groups re-directed their attacks to Israeli targets, espe - 31 cially Israeli soldiers guarding the border. Hence, the old...Egyptian relations. Even some 35 legal opposition parties in Egypt have indicated pri- vately that if the terrorism problem emanating from the Sinai

  20. Airport Ground Access Planning Guide.

    DTIC Science & Technology

    1980-07-01

    herein solely because they are con- sidered essential to the object of this report. 4! I Technical Report Documentation Pago 1 0. o . n m n c c s i . 3...INFORMATION SERVICE. SPRINGFIELD. VIRGINIA 22161 19. Security Clossif. (of this report) 20. Security Cleesil. (of this pagoe ) 21. Ne. of Peg 22. Pri te...passenger totals, and the sheer number of employees contributes heavily to surface con- gestion in terminal areas. For example, some 6,000 vehicles can be

  1. Bibliography on Cold Regions Science and Technology. Volume 41. Part 1

    DTIC Science & Technology

    1987-12-01

    111 Possibilities of oxy ^en-isotope technique in studying ground Ice. [O vozmozhnostiakh izotopno-kislorod- nogo metoda pri izuchenii podzemnykh...fore- casting of ice breakup dates for rivers. [O putiakh usovershenstvovaniia metoda srednesrochnogo prog- noza srokov vskrytiia rek), Liser, I.1A...167p., Refs. p,157-164. Goldthwait. R.P.. ed. McKenzie , G.D., ed. Glacial deposits. Glacial geology. Glacier ablation, Glacier melting, Landforms

  2. A History of the Savannah District U.S. Army Corps of Engineers

    DTIC Science & Technology

    1989-01-01

    increasingly industrialized and urbanized. The Corps of Engi- neers, both on a national level and in Georgia, was called on to meet the many challenges...civil mission of the Corps changed to meet the needs of a post- industrialized society for energy, recreation, and careful regulation of the use of...vessels carried from Georgia reflected the variety and abundance of its agriculture, Indian trade, and pri- mary industries . 19 The firm of Harris and

  3. Features of cellular effects of combined exposure to ionizing radiation and copper ions.

    PubMed

    Hapieienko, D D

    2013-01-01

    Postijne zrostannja masshtabiv vykorystannja himichnyh rechovyn ta dzherel ionizujuchogo vyprominjuvannja v riznyh galuzjah promyslovosti, medycyni, nauci zbil'shuje i'h vplyv na vsi komponenty pryrodnogo seredovyshha. Tozh zrostaje jmovirnist' odnochasnogo vplyvu radiacijnogo ta himichnogo faktoriv na biologichni ob'jekty, a v zv’jazku z cym pytannja osoblyvostej kombinovanoi' dii' riznyh za svojeju pryrodoju faktoriv staje vse bil'sh aktual'nym. Metoju roboty stalo doslidzhennja osoblyvostej okremogo ta kombinovanogo vplyvu ionizujuchogo vyprominjuvannja ta solej midi na zhyttjezdatnist' klityn in vitro. Materialy i metody. Doslidzhennja vykonani na pereshhepljuvanij kul'turi klityn linii' L929. Acetat midi (Cu(CH3COOH)2) dodavaly do kul'tury klityn cherez 1 godynu pislja i'h oprominennja. Oprominennja klityn provodyly cherez 24 godyny pislja posadky. Proliferatyvnu aktyvnist' klityn ocinjuvaly za kinetykoju rostu. Rezul'taty doslidzhen' pokazaly, shho cytotoksychnist' ioniv midi projavljajet'sja pry koncentracii' 1 mkmol'/l. Kombinovana dija ionizujuchogo vyprominjuvannja v subletal'nyh dozah ta ioniv midi v koncentracijah 0,001 ta 1 mkmol'/l pryzvela do zbil'shennja kil'kosti atypovyh polikariocytiv. Vysnovky. Pry inkubacii' klityn z ionamy midi v riznyh koncentracijah sposterigajet'sja jak aktyvacija, tak i ingibuvannja proliferatyvnoi' ta mitotychnoi' aktyvnosti klityn. Vyzhyvannja klityn ta mitotychna aktyvnist' pry oprominenni zmenshujut'sja z pidvyshhennjam dozy, a indeks polikariocytiv zrostaje. Pry kombinovanomu vplyvi ionizujuchogo vyprominjuvannja ta ioniv midi na klityny in vitro sposterigaly zminy morfofunkcional'nyh vlastyvostej klityn, jaki prjamo proporcijno ne zalezhaly ni vid dozy oprominennja, ni vid koncentracii' ioniv midi.

  4. Optimized Deposition Parameters & Coating Properties of Cobalt Phosphorus Alloy Electroplating for Technology Insertion Risk Reduction

    DTIC Science & Technology

    2010-10-01

    TECHNOLOGY INSERTION RISK REDUCTION (ESTCP Project WP-0411) Ruben Prado & John Benfer Naval Air Systems Command Diana Facchini Integran...Phosphorus Alloy Electroplating for Technology Insertion Risk Reduction" Ruben Prado, John Benfer, Diana Facchini, Keith Legg NAVAIR ISSC/FRC-SE NAS...coating. Attempts were then made to pry the coating with a sharp blade to assess whether there was any lift off of the coating which would indicate

  5. Combat Systems Department Employee Recognition System

    DTIC Science & Technology

    1996-08-01

    the individual’s view of positive reinforcement . Include them in discussions. Ask for their opinions. 4 NSWCDD/MP-96/137 SECTION 3 INSTRUCTIONS 3.1...PROVIDES POSITIVE REINFORCEMENT . THE EASIER IT IS TO DO, THE MORE LIKELY IT IS TO GET DONE. N-DEPARTMENT EMPLOYEE RECOGNITION SYSTEM PRI NCI PLES THERE ARE...INDIVIDUAL’S VIEW OF POSITIVE REINFORCEMENT . ASK THEM I Papa .18Iv 15 N-DEPARTMENT EMPLOYEE RECOGNITION SYSTEM * OUTLINE A. TASK FORCE MEMBERSHIP

  6. Co-treatment with the anti-malarial drugs mefloquine and primaquine highly sensitizes drug-resistant cancer cells by increasing P-gp inhibition.

    PubMed

    Kim, Ju-Hwa; Choi, Ae-Ran; Kim, Yong Kee; Yoon, Sungpil

    2013-11-22

    The purpose of this study was to identify conditions that will increase the sensitivity of resistant cancer cells to anti-mitotic drugs. Currently, atovaquine (ATO), chloroquine (CHL), primaquine (PRI), mefloquine (MEF), artesunate (ART), and doxycycline (DOY) are the most commonly used anti-malarial drugs. Herein, we tested whether anti-malarial drugs can sensitize drug-resistant KBV20C cancer cells. None of the six tested anti-malarial drugs was found to better sensitize the drug-resistant cells compared to the sensitive KB cells. With an exception of DOY, all other anti-malarial drugs tested could sensitize both KB and KBV20C cells to a similar extent, suggesting that anti-malarial drugs could be used for sensitive as well as resistant cancer cells. Furthermore, we examined the effects of anti-malarial drugs in combination with an antimitotic drug, vinblastine (VIN) on the sensitisation of resistant KBV20C cells. Using viability assay, microscopic observation, assessment of cleaved PARP, and Hoechst staining, we identified that two anti-malarial drugs, PRI and MEF, highly sensitized KBV20C-resistant cells to VIN treatment. Moreover, PRI- or MEF-induced sensitisation was not observed in VIN-treated sensitive KB parent cells, suggesting that the observed effect is specific to resistant cancer cells. We demonstrated that the PRI and MEF sensitisation mechanism mainly depends on the inhibition of p-glycoprotein (P-gp). Our findings may contribute to the development of anti-malarial drug-based combination therapies for patients resistant to anti-mitotic drugs.

  7. Environmental and Cultural Impact Proposed Tennessee Colony Reservoir, Trinity River, Texas. Volume V. Appendix G.

    DTIC Science & Technology

    1972-01-01

    allocation. Pri- marily it is concerned with any land use that increases surface water runoff and soil compaction, two phenomena that decrease recharge...vices to increased tourism and non-agricultural commercial demands related to the proposed reservoir. Industrial transportation through these areas to...Soil drainage of the area is moderately well to poor. This is an agricultural community with some potential development for tourism that may occur on

  8. Expedient Repair of Structural Facilities (ERSF). Volume 1. ERSF System Development

    DTIC Science & Technology

    1992-01-01

    Post (B) Destroyed Wall Plywood Backing (R) Earth Berm (B) Precast Slabs (B) Shotcrete ’ Repair Masonry Blocks Wall Breach Plywood Backing (R) Earth Berm...B) Precast Slabs (R) Shotcretel Repair Masonry Blocks Floor/Roof Breach Plywood And Rolled Roofing (R) Rapid Set Concrete (R) Shotcrete ’ Repair Seal...Pry Open Door (R) Destroyed Window Plastic Sheeting (R) Acrylic Panel Replacement (R) 1 - Shotcrete System is still under development by AFESC/RDCS

  9. Language Impairment in Children Perinatally Infected with HIV Compared to Children Who Were HIV-Exposed and Uninfected

    PubMed Central

    Rice, Mabel L.; Buchanan, Ashley L.; Siberry, George K; Malee, Kathleen M.; Zeldow, Bret; Frederick, Toni; Purswani, Murli U.; Hoffman, Howard J.; Sirois, Patricia A.; Smith, Renee; Torre, Peter; Allison, Susannah M; Williams, Paige L.

    2011-01-01

    Objective To investigate risk for language impairment in children perinatally infected or exposed to HIV. Methods We evaluated the prevalence of language impairment (LI) in 7–16 year old children with perinatal HIV infection (HIV+) compared to children HIV-exposed and uninfected (HEU), using a comprehensive standardized language test (CELF-4). LI was classified as primary LI (Pri-LI) (monolingual English exposure and no cognitive or hearing impairment), concurrent LI (Con-LI) (cognitive or hearing impairment), or no LI. Associations of demographic, caregiver, HIV disease and antiretroviral treatment (ART) factors with LI category were evaluated using univariate and multivariable logistic regression models. Results Of 468 children with language assessments, 184 (39%) had LI. No difference was observed by HIV infection status for overall LI or for Pri-LI or Con-LI; mean (SD) CELF-4 scores were 88.5 (18.4) for HIV+ vs 87.5 (17.9) for HEU. After adjustment, Black children had higher odds of Pri-LI vs no LI (aOR=2.43, p=0.03). Children who were Black, Hispanic, had a caregiver with low education or low IQ, or a non-biological parent as caregiver had higher odds of Con-LI vs no LI. Among HIV+ children, viral load >400 copies/ml (aOR=3.04, p<0.001), CDC Class C (aOR=2.19, p=0.02) and ART initiation <6 months of age (aOR=2.12, p=0.02) were associated with higher odds of Con-LI vs. no LI. Conclusions Children perinatally exposed to HIV are at high risk for LI, but such risk was not increased for youth with HIV. Risk factors differed for Pri-LI and Con-LI. PMID:22179050

  10. Economic Impacts from Spending by Marina Slip Renters and Private Dock Owners at Lake Sidney Lanier

    DTIC Science & Technology

    2008-02-01

    and private docks at Lake Sid- ney Lanier ( Georgia ), Lake Barkley (Kentucky/Tennessee), and Hartwell Lake ( Georgia /North Carolina/South Carolina...north- ern Georgia . This economic assessment is based on the results of a 1999 survey of the samples of Lake Sidney Lanier marina slip renters and pri...renters, and private dock owners and guests at Lake Sidney Lanier, located in northern Georgia and situated within the U.S. Army Corps of Engineers

  11. Professional Training for TRADOC Environmental and Natural Resource Professionals. Volume 2. Source Listings

    DTIC Science & Technology

    1991-05-01

    Supervisor; Hazardous Waste Site Worker’s Refresher See the Wayne State University Survey, Appendix B-2 for additional Academic sources. 28... Wayne State University Detroit, Michigan Barry Stem U.S. Department of Health and Human Services Rockville, Maryland been collected from governmental...TIhe United States Department of Health and Human Services through agencies, professional societies and pri- Wayne State University (WSU) has

  12. Analysis of Seismic Activity of the last 15 Years Nearby Puerto Rico and Caribbean Region.

    NASA Astrophysics Data System (ADS)

    Huerta-Lopez, C. I.; Torres-Ortíz, D. M.; Fernández-Heredia, A. I.; Martínez-Cruzado, J. A.

    2015-12-01

    An earthquake catalog of the seismicity occurred during the last 15 years in the Caribbean region, nearby the vicinity of Puerto Rico Island (PRI) was compiled in order to capture the big picture of the regional seismic activity ratio and in particular at the epicentral regions of several historical and instrumentally recorded (during 2008-20015) large to moderate magnitude earthquakes occurred nearby PRI in onshore and offshore, which include the M6.4 earthquake of 01/13/2014, the largest earthquake recorded instrumentally nearby PRI. From the point of view of joint temporal-spatial distribution of epicenters, episodic temporal-spatial seismic activity is clearly seen as temporal-spatial concentrations during certain time intervals in different regions. These localized concentrations of epicenters that occur during certain time intervals in well localized/concentrated regions may suggest "seismic gaps" that shows no regular time interval, neither spatial pattern. In the epicentral region of the M6.4 01/13/2014 earthquake and the historical Mona Passage M7.5 earthquake of 10/11/1918, episodic concentrations in time and space of small magnitude earthquakes epicenters is evident, however do not show temporal pattern. Preliminary results of statistical analysis of an ongoing research in terms of the parameter b (Gutenberg-Richter relationship), and the Omori's law with the aim to relate the tectonic framework of the region (or sub-regions) such as structural heterogeneity stress are here presented/discussed.

  13. Changes of White Matter Diffusion Anisotropy in Response to a 6-Week iPad Application-Based Occupational Therapy Intervention in Children with Surgically Treated Hydrocephalus: A Pilot Study.

    PubMed

    Yuan, Weihong; Harpster, Karen; Jones, Blaise V; Shimony, Joshua S; McKinstry, Robert C; Weckherlin, Nicole; Powell, Stephanie S; Barnard, Holly; Engsberg, Jack; Kadis, Darren S; Dodd, Jonathan; Altaye, Mekibib; Limbrick, David D; Holland, Scott K; Simpson, Sarah M; Bidwell, Sarah; Mangano, Francesco T

    2016-10-01

    Objective Our aims were (1) to test whether diffusion tensor imaging (DTI) could detect underlying white matter (WM) changes after a 6-week iPad application-based occupational therapy (OT) intervention in children with surgically treated hydrocephalus (HCP); and (2) to explore the association between WM changes and performance outcomes. Methods Five children (age range: 6.05-9.10 years) with surgically treated HCP completed an intensive iPad-based OT intervention targeting common domains of long-term deficits in children with HCP. The intervention included 6 weekly sessions in an OT clinic supplementing home-based program (1 hour/day, 4 days/week). DTI and neuropsychological assessments were performed before and after the intervention. Observation After the therapy, significant increases in fractional anisotropy (FA) and/or decreases in radial diffusivity were found in extensive WM areas. All participants demonstrated an increased perceptual reasoning index (PRI, Wechsler Abbreviated Scale of Intelligence: 2nd edition, PRI gains = 14.20 ± 7.56, p = 0.014). A significant positive correlation was found between PRI increase and the increase of FA in the right posterior limb of the internal capsule and the right external capsule (both p < 0.05). Conclusion This study provides initial evidence of DTI's sensitivity to detect subtle WM changes associated with performance improvements in response to a 6-week OT intervention in children with HCP.

  14. Cellular Localization and Processing of Primary Transcripts of Exonic MicroRNAs

    PubMed Central

    Slezak-Prochazka, Izabella; Kluiver, Joost; de Jong, Debora; Kortman, Gertrud; Halsema, Nancy; Poppema, Sibrand; Kroesen, Bart-Jan; van den Berg, Anke

    2013-01-01

    Processing of miRNAs occurs simultaneous with the transcription and splicing of their primary transcripts. For the small subset of exonic miRNAs it is unclear if the unspliced and/or spliced transcripts are used for miRNA biogenesis. We assessed endogenous levels and cellular location of primary transcripts of three exonic miRNAs. The ratio between unspliced and spliced transcripts varied markedly, i.e. >1 for BIC, <1 for pri-miR-146a and variable for pri-miR-22. Endogenous unspliced transcripts were located almost exclusively in the nucleus and thus available for miRNA processing for all three miRNAs. Endogenous spliced pri-miRNA transcripts were present both in the nucleus and in the cytoplasm and thus only partly available for miRNA processing. Overexpression of constructs containing the 5’ upstream exonic or intronic sequence flanking pre-miR-155 resulted in strongly enhanced miR-155 levels, indicating that the flanking sequence does not affect processing efficiency. Exogenously overexpressed full-length spliced BIC transcripts were present both in the nucleus and in the cytoplasm, were bound by the Microprocessor complex and resulted in enhanced miR-155 levels. We conclude that both unspliced and spliced transcripts of exonic miRNAs can be used for pre-miRNA cleavage. Splicing and cytoplasmic transport of spliced transcripts may present a mechanism to regulate levels of exonic microRNAs. PMID:24073292

  15. Structural basis for replication origin unwinding by an initiator primase of plasmid ColE2-P9: duplex DNA unwinding by a single protein.

    PubMed

    Itou, Hiroshi; Yagura, Masaru; Shirakihara, Yasuo; Itoh, Tateo

    2015-02-06

    Duplex DNA is generally unwound by protein oligomers prior to replication. The Rep protein of plasmid ColE2-P9 (34 kDa) is an essential initiator for plasmid DNA replication. This protein binds the replication origin (Ori) in a sequence-specific manner as a monomer and unwinds DNA. Here we present the crystal structure of the DNA-binding domain of Rep (E2Rep-DBD) in complex with Ori DNA. The structure unveils the basis for Ori-specific recognition by the E2Rep-DBD and also reveals that it unwinds DNA by the concerted actions of its three contiguous structural modules. The structure also shows that the functionally unknown PriCT domain, which forms a compact module, plays a central role in DNA unwinding. The conservation of the PriCT domain in the C termini of some archaeo-eukaryotic primases indicates that it probably plays a similar role in these proteins. Thus, this is the first report providing the structural basis for the functional importance of the conserved PriCT domain and also reveals a novel mechanism for DNA unwinding by a single protein.

  16. RACK1 scaffold proteins influence miRNA abundance in Arabidopsis.

    PubMed

    Speth, Corinna; Willing, Eva-Maria; Rausch, Stephanie; Schneeberger, Korbinian; Laubinger, Sascha

    2013-11-01

    MicroRNAs (miRNAs) regulate plant development by post-transcriptional regulation of target genes. In Arabidopsis thaliana, DCL1 processes precursors (pri-miRNAs) to miRNA duplexes, which associate with AGO1. Additional proteins act in concert with DCL1 (e.g. HYL1 and SERRATE) or AGO1 to facilitate efficient and precise pri-miRNA processing and miRNA loading, respectively. In this study, we show that the accumulation of plant microRNAs depends on RECEPTOR FOR ACTIVATED C KINASE 1 (RACK1), a scaffold protein that is found in all higher eukaryotes. miRNA levels are reduced in rack1 mutants, and our data suggest that RACK1 affects the microRNA pathway via several distinct mechanisms involving direct interactions with known microRNA factors: RACK1 ensures the accumulation and processing of some pri-miRNAs, directly interacts with SERRATE and is part of an AGO1 complex. As a result, mutations in RACK1 lead to over-accumulation of miRNA target mRNAs, which are important for ABA responses and phyllotaxy, for example. In conclusion, our study identified complex functioning of RACK1 proteins in the Arabidopsis miRNA pathway; these proteins are important for miRNA production and therefore plant development.

  17. Association analysis of photoperiodic flowering time genes in west and central African sorghum [Sorghum bicolor (L.) Moench

    PubMed Central

    2012-01-01

    Background Photoperiod-sensitive flowering is a key adaptive trait for sorghum (Sorghum bicolor) in West and Central Africa. In this study we performed an association analysis to investigate the effect of polymorphisms within the genes putatively related to variation in flowering time on photoperiod-sensitive flowering in sorghum. For this purpose a genetically characterized panel of 219 sorghum accessions from West and Central Africa was evaluated for their photoperiod response index (PRI) based on two sowing dates under field conditions. Results Sorghum accessions used in our study were genotyped for single nucleotide polymorphisms (SNPs) in six genes putatively involved in the photoperiodic control of flowering time. Applying a mixed model approach and previously-determined population structure parameters to these candidate genes, we found significant associations between several SNPs with PRI for the genes CRYPTOCHROME 1 (CRY1-b1) and GIGANTEA (GI). Conclusions The negative values of Tajima's D, found for the genes of our study, suggested that purifying selection has acted on genes involved in photoperiodic control of flowering time in sorghum. The SNP markers of our study that showed significant associations with PRI can be used to create functional markers to serve as important tools for marker-assisted selection of photoperiod-sensitive cultivars in sorghum. PMID:22394582

  18. In-vivo quantification of primary microRNA processing by Drosha with a luciferase based system

    SciTech Connect

    Allegra, Danilo; Mertens, Daniel

    2011-03-25

    Research highlights: {yields} Posttranscriptional regulation of miRNA processing is difficult to quantify. {yields} Our in-vivo processing assay can quantify Drosha cleavage in live cells. {yields} It is based on luciferase reporters fused with pri-miRNAs. {yields} The assay validates the processing defect caused by a mutation in pri-16-1. {yields} It is a sensitive method to quantify pri-miRNA cleavage by Drosha in live cells. -- Abstract: The RNAse III Drosha is responsible for the first step of microRNA maturation, the cleavage of primary miRNA to produce the precursor miRNA. Processing by Drosha is finely regulated and influences the amount of mature microRNA in a cell. We describe in the present work a method to quantify Drosha processing activity in-vivo, which is applicable to any microRNA. With respect to other methods for measuring Drosha activity, our system is faster and scalable, can be used with any cellular system and does not require cell sorting or use of radioactive isotopes. This system is useful to study regulation of Drosha activity in physiological and pathological conditions.

  19. Tradition of the pharmacies of Celje.

    PubMed

    Pocivavsek, Marija

    2009-01-01

    In Celje, the first pharmacist is mentioned as early as 1578, among the first cities in Styria. In the 16th century, provincial classes hired and paid for the so-called provincial pharmacists and also monitored their work. Until the 19th century, pharmacists were considered tradesmen, then the public character of the profession changed: a court decree from 1820 required university education in pharmacy or chemistry. Since pharmacy trade was licensed and the number of pharmacies regulated, there was only one pharmacy in Celje for many years (pharmacy Pri orlu). The next two pharmacies were opened only after lengthy efforts: in the first half of the 17th century the second one (pharmacy Pri Mariji Pomagaj) and only in 1922 the third one (pharmacy Pri kriZu). After World War II, all private pharmacies were nationalized; in 1968 a public institute The pharmacies of Celje was established. In February 2009, the Museum of Recent Histoy Celje opened a museum pharmacy, which gives visitors an opportunity to experience the middle-class lifestyle from the time before World War II.

  20. Life cycle of a data warehousing project in healthcare.

    PubMed

    Verma, R; Harper, J

    2001-01-01

    Hill Physicians Medical Group (and its medical management firm, PriMed Management) early on recognized the need for a data warehouse. Management demanded that data from many sources be integrated, cleansed, and formatted. As a first step, an operational data store (ODS) was built and populated with data from the main transactional system; encounter data were added. The ODS has served its purpose well and has whetted management's appetite for more information and faster, more reliable access, all in one location. PriMed hired Annams Systems Consulting (Annams) for this effort. A team was formed, made up of consultants from Annams and members of PriMed's information services (IS) team. The "classical" approach is being taken: enhancing the ODS, which is largely normalized in structure, and integrating data from various sources, along with enforcing business rules. The team is designing and implementing data marts and a "star schema" style of data modeling--a useful tool for management to evaluate results before investing further.

  1. Monitoring Spring Recovery of Photosynthesis and Spectral Reflectance in Temperate Evergreen and Mixed Deciduous Forests

    NASA Astrophysics Data System (ADS)

    Wong, C. Y.; Arain, M. A.; Ensminger, I.

    2015-12-01

    Evergreen conifers in boreal and temperate regions undergo strong seasonal changes in photoperiod and temperatures, which characterizes their photosynthetic activity with high activity in the growing season and downregulation during the winter season. Monitoring the timing of the transitions in evergreens is difficult since it's a largely invisible process, unlike deciduous trees that have a visible budding and senescence sequence. Spectral reflectance and the photochemical reflectance index (PRI), often used as a proxy for photosynthetic light-use efficiency, provides a promising tool to track the transition of evergreens between inactive and active photosynthetic states. To better understand the relationship between PRI and photosynthetic activity and to contrast this relationship between plant functional types, the spring recovery of an evergreen forest and mixed deciduous forest was monitored using spectral reflectance, chlorophyll fluorescence and gas exchange. All metrics indicate photosynthetic recovery during the spring season. These findings indicate that PRI can be used to observe the spring recovery of photosynthesis in evergreen conifers but may not be best suited for deciduous trees. These findings have implications for remote sensing, which provides a promising long-term monitoring system of whole ecosystems, which is important since their roles in the carbon cycle may shift in response to climate change.

  2. WAIS-IV Verbal Comprehension Index and Perceptual Reasoning Index performance is unaffected by cold-pressor pain induction.

    PubMed

    Etherton, Joseph

    2015-01-01

    Cognitive complaints are frequently reported by patients with chronic pain, but studies of the effects of pain on different forms of cognition have been inconsistent. In two studies, cold-pressor pain was induced in nonclinical undergraduate volunteers who, under normal conditions, took Verbal Comprehension Index (VCI) subtests (Study 1, n=57) or Perceptual Reasoning Index (PRI) subtests (Study 2, n=59) followed by a different VCI or PRI subtest taken during either cold-pressor pain induction or a nonpainful control condition. Pain was not associated with significant reduction in subtest scaled score performance. Results indicate that cold-pressor pain in nonclinical volunteers does not impair Wechsler Adult Intelligence Scale-Fourth Edition (WAIS-IV) VCI or PRI performance and suggest that pain per se should not be expected to substantially influence these cognitive abilities. Viewed together with previous Processing Speed Index and Working Memory Index studies, no cognitive or intellectual functions measured by the WAIS-IV are affected by induced pain. Generalizability of these findings may be limited by the fact that patients with chronic pain may differ in their pain experience from nonclinical volunteers with induced pain.

  3. Prorating WAIS - IV summary scores for patients with relapsing-remitting multiple sclerosis.

    PubMed

    Ryan, Joseph J; Umfleet, Laura Glass; Gontkovsky, Samuel T

    2016-11-01

    We evaluated the utility of prorating appropriate combinations of two, six and eight Wechsler Adult Intelligence Scale - Fourth Edition (WAIS - IV) subtests for estimating the Verbal Comprehension Index (VCI), Perceptual Reasoning Index (PRI), Full Scale IQ (FSIQ) and General Ability Index (GAI) in a sample of individuals diagnosed with multiple sclerosis (MS). Forty-eight outpatients completed the WAIS - IV and Wechsler Memory Scale - Fourth Edition (WMS - IV) as part of a comprehensive neuropsychological battery. Means for age, education and duration of diagnosis were 42.35, 14.21 and 8.30 years, respectively. Paired t-tests showed no significant differences between prorated and standard means for VCI (93.46 vs. 93.73), PRI (90.19 vs. 89.44), FSIQ (88.53 vs. 88.47) or GAI (90.56 vs. 90.65). Correlations between prorated and standard composites were ≥0.89 in every instance. Correlations between the standard and prorated composites and education, disability status and WMS - IV indexes did not reveal a single contrast, where the correlations were significantly different. The present findings support the use of the two-subtest VCI and PRI composites and the eight-subtest FSIQ and four-subtest GAI in the assessment of patients with MS.

  4. The RNA-binding protein QKI5 regulates primary miR-124-1 processing via a distal RNA motif during erythropoiesis.

    PubMed

    Wang, Fang; Song, Wei; Zhao, Hongmei; Ma, Yanni; Li, Yuxia; Zhai, Di; Pi, Jingnan; Si, Yanmin; Xu, Jiayue; Dong, Lei; Su, Rui; Zhang, Mengmeng; Zhu, Yong; Ren, Xiaoxia; Miao, Fei; Liu, Wenjie; Li, Feng; Zhang, Junwu; He, Aibin; Shan, Ge; Hui, Jingyi; Wang, Linfang; Yu, Jia

    2017-03-01

    MicroRNA (miRNA) biogenesis is finely controlled by complex layers of post-transcriptional regulators, including RNA-binding proteins (RBPs). Here, we show that an RBP, QKI5, activates the processing of primary miR-124-1 (pri-124-1) during erythropoiesis. QKI5 recognizes a distal QKI response element and recruits Microprocessor through interaction with DGCR8. Furthermore, the recruited Microprocessor is brought to pri-124-1 stem loops by a spatial RNA-RNA interaction between two complementary sequences. Thus, mutations disrupting their base-pairing affect the strength of QKI5 activation. When erythropoiesis proceeds, the concomitant decrease of QKI5 releases Microprocessor from pri-124-1 and reduces mature miR-124 levels to facilitate erythrocyte maturation. Mechanistically, miR-124 targets TAL1 and c-MYB, two transcription factors involved in normal erythropoiesis. Importantly, this QKI5-mediated regulation also gives rise to a unique miRNA signature, which is required for erythroid differentiation. Taken together, these results demonstrate the pivotal role of QKI5 in primary miRNA processing during erythropoiesis and provide new insights into how a distal element on primary transcripts affects miRNA biogenesis.

  5. Genetic transformation of Bacopa monnieri by wild type strains of Agrobacterium rhizogenes stimulates production of bacopa saponins in transformed calli and plants.

    PubMed

    Majumdar, Sukanya; Garai, Saraswati; Jha, Sumita

    2011-05-01

    We have developed an efficient transformation system for Bacopa monnieri, an important Indian medicinal plant, using Agrobacterium rhizogenes strains LBA 9402 and A4. Transformed roots induced by strain LBA 9402 spontaneously dedifferentiated to callus while excised roots induced by strain A4 spontaneously showed induction of shoot buds within 10 days. PCR and RT-PCR analysis revealed the presence and expression of the rolAB and rolC genes at the transcription level in pRi A4 transformed cultures indicating that the TL-DNA was integrated retained and expressed in the A4-Ri transformed shoots. Transformed calli showed the presence of rolAB or rol A, TR and ags genes. Transformed plants showed morphological features typically seen in transgenic plants produced by A. rhizogenes. Growth and biomass accumulation was significantly higher in the transformed shoots (twofold) and roots (fourfold) than in the non-transformed (WT) plants. In pRi A4-transformed plants, the content of bacopasaponin D, bacopasaponin F, bacopaside II and bacopaside V was enhanced significantly as compared to WT plants of similar age while bacoside A3 and bacopasaponin C content was comparable with that of WT plants. Significant increase in content of five bacopa saponins could be detected in pRi 9402-transformed callus cultures. There is an overall stimulatory effect on accumulation of bacopa saponins in transformed plants and cells of B. monnieri establishing the role of endogenous elicitation by Ri T-DNA of A. rhizogenes.

  6. Flavonoids induce the expression of acetylcholinesterase in cultured osteoblasts.

    PubMed

    Xu, Miranda L; Bi, Cathy W C; Kong, Ava Y Y; Dong, Tina T X; Wong, Yung H; Tsim, Karl W K

    2016-11-25

    Flavonoids, a group of natural compounds mainly derived from plants, are known to possess osteogenic effects in bone cells. Here, we aimed to test if flavonoid could induce a cholinergic enzyme, acetylcholinesterase (AChE), as well as bone differentiation. In cultured rat osteoblasts, twenty flavonoids, deriving from Chinese herbs and having known induction of alkaline phosphatase (ALP(1)) expression, were tested for its induction activity on AChE expression. Eleven flavonoids showed the induction, and five of them had robust activation of AChE expression, including baicalin, calycosin, genistin, hyperin and pratensein: the induction of AChE included the levels of mRNA, protein and enzymatic activity. Moreover, the flavonoid-induced AChE expression in cultured osteoblast was in proline-rich membrane anchor (PRiMA)-linked tetrameric globular form (G4) only. In parallel, the expression of PRiMA was also induced by the application of flavonoids. The flavonoid-induced AChE in the cultures was not affected by estrogen receptor blocker, ICI 182,780. Taken together, the induction of PRiMA-linked AChE in osteoblast should be independent to classical estrogen signaling pathway.

  7. Modified Omega-k Algorithm for High-Speed Platform Highly-Squint Staggered SAR Based on Azimuth Non-Uniform Interpolation

    PubMed Central

    Zeng, Hong-Cheng; Chen, Jie; Liu, Wei; Yang, Wei

    2015-01-01

    In this work, the staggered SAR technique is employed for high-speed platform highly-squint SAR by varying the pulse repetition interval (PRI) as a linear function of range-walk. To focus the staggered SAR data more efficiently, a low-complexity modified Omega-k algorithm is proposed based on a novel method for optimal azimuth non-uniform interpolation, avoiding zero padding in range direction for recovering range cell migration (RCM) and saving in both data storage and computational load. An approximate model on continuous PRI variation with respect to sliding receive-window is employed in the proposed algorithm, leaving a residual phase error only due to the effect of a time-varying Doppler phase caused by staggered SAR. Then, azimuth non-uniform interpolation (ANI) at baseband is carried out to compensate the azimuth non-uniform sampling (ANS) effect resulting from continuous PRI variation, which is further followed by the modified Omega-k algorithm. The proposed algorithm has a significantly lower computational complexity, but with an equally effective imaging performance, as shown in our simulation results. PMID:25664433

  8. A Biogenesis Step Upstream of Microprocessor Controls miR-17∼92 Expression.

    PubMed

    Du, Peng; Wang, Longfei; Sliz, Piotr; Gregory, Richard I

    2015-08-13

    The precise control of miR-17∼92 microRNA (miRNA) is essential for normal development, and overexpression of certain miRNAs from this cluster is oncogenic. Here, we find that the relative expression of the six miRNAs processed from the primary (pri-miR-17∼92) transcript is dynamically regulated during embryonic stem cell (ESC) differentiation. Pri-miR-17∼92 is processed to a biogenesis intermediate, termed "progenitor-miRNA" (pro-miRNA). Pro-miRNA is an efficient substrate for Microprocessor and is required to selectively license production of pre-miR-17, pre-miR-18a, pre-miR-19a, pre-miR-20a, and pre-miR-19b from this cluster. Two complementary cis-regulatory repression domains within pri-miR-17∼92 are required for the blockade of miRNA processing through the formation of an autoinhibitory RNA conformation. The endonuclease CPSF3 (CPSF73) and the spliceosome-associated ISY1 are responsible for pro-miRNA biogenesis and expression of all miRNAs within the cluster except miR-92. Thus, developmentally regulated pro-miRNA processing is a key step controlling miRNA expression and explains the posttranscriptional control of miR-17∼92 expression in development.

  9. Microprocessor mediates transcriptional termination of long noncoding RNA transcripts hosting microRNAs.

    PubMed

    Dhir, Ashish; Dhir, Somdutta; Proudfoot, Nick J; Jopling, Catherine L

    2015-04-01

    MicroRNAs (miRNAs) play a major part in the post-transcriptional regulation of gene expression. Mammalian miRNA biogenesis begins with cotranscriptional cleavage of RNA polymerase II (Pol II) transcripts by the Microprocessor complex. Although most miRNAs are located within introns of protein-coding transcripts, a substantial minority of miRNAs originate from long noncoding (lnc) RNAs, for which transcript processing is largely uncharacterized. We show, by detailed characterization of liver-specific lnc-pri-miR-122 and genome-wide analysis in human cell lines, that most lncRNA transcripts containing miRNAs (lnc-pri-miRNAs) do not use the canonical cleavage-and-polyadenylation pathway but instead use Microprocessor cleavage to terminate transcription. Microprocessor inactivation leads to extensive transcriptional readthrough of lnc-pri-miRNA and transcriptional interference with downstream genes. Consequently we define a new RNase III-mediated, polyadenylation-independent mechanism of Pol II transcription termination in mammalian cells.

  10. Super-Enhancer-Mediated RNA Processing Revealed by Integrative MicroRNA Network Analysis.

    PubMed

    Suzuki, Hiroshi I; Young, Richard A; Sharp, Phillip A

    2017-03-09

    Super-enhancers are an emerging subclass of regulatory regions controlling cell identity and disease genes. However, their biological function and impact on miRNA networks are unclear. Here, we report that super-enhancers drive the biogenesis of master miRNAs crucial for cell identity by enhancing both transcription and Drosha/DGCR8-mediated primary miRNA (pri-miRNA) processing. Super-enhancers, together with broad H3K4me3 domains, shape a tissue-specific and evolutionarily conserved atlas of miRNA expression and function. CRISPR/Cas9 genomics revealed that super-enhancer constituents act cooperatively and facilitate Drosha/DGCR8 recruitment and pri-miRNA processing to boost cell-specific miRNA production. The BET-bromodomain inhibitor JQ1 preferentially inhibits super-enhancer-directed cotranscriptional pri-miRNA processing. Furthermore, super-enhancers are characterized by pervasive interaction with DGCR8/Drosha and DGCR8/Drosha-regulated mRNA stability control, suggesting unique RNA regulation at super-enhancers. Finally, super-enhancers mark multiple miRNAs associated with cancer hallmarks. This study presents principles underlying miRNA biology in health and disease and an unrecognized higher-order property of super-enhancers in RNA processing beyond transcription.

  11. Male Megacyllene robiniae (Coleoptera: Cerambycidae) use multiple tactics when aggressively competing for mates.

    PubMed

    Ray, Ann M; Ginzel, Matthew D; Hanks, Lawrence M

    2009-04-01

    Adult male Megacyllene robiniae (Förster) (Coleoptera: Cerambycidae) that are paired with a female often are challenged by conspecific males that attempt to displace them. In staged laboratory bouts, challenging males used seven distinct tactics to displace defending males, including wedging their head between the defender and the female (termed wedging), straddling the mated pair and pulling the defender off (prying), pulling it with the mandibles, batting it with the antennae, or pushing, biting, or kicking the defender. Individual challengers attempted as many as six different tactics in a single bout, repeating certain tactics multiple times. They often attempted tactics that were not very effective. For example, prying was one of the most common attempted tactics but was rarely effective. However, few challengers attempted to push defenders off the female, even though that tactic often was effective. Challengers apparently were influenced by context in their choice of particular tactics. For example, males that approached the mated pair from the side were likely to use wedging, whereas those approaching head on were more likely to bat with the antennae. Choice of tactic apparently was not influenced by absolute size of challengers, nor was it strongly influenced by relative size of defenders. However, the effectiveness of tactics varied significantly with relative body size: larger challengers were most successful when prying or pushing, while smaller challengers were most successful when biting and kicking. By using different tactics, relatively small males were as adept as larger males at displacing rivals.

  12. The human DiGeorge syndrome critical region gene 8 and Its D. melanogaster homolog are required for miRNA biogenesis.

    PubMed

    Landthaler, Markus; Yalcin, Abdullah; Tuschl, Thomas

    2004-12-14

    MicroRNAs (miRNAs) represent a family of small noncoding RNAs that are found in plants and animals (for recent reviews, see ). miRNAs are expressed in a developmentally and tissue-specific manner and regulate the translational efficiency and stability of partial or fully sequence-complementary mRNAs. miRNAs are excised in a stepwise process from double-stranded RNA precursors that are embedded in long RNA polymerase II primary transcripts (pri-miRNA). Drosha RNase III catalyzes the first excision event, the release in the nucleus of a hairpin RNA (pre-miRNA), which is followed by export of the pre-miRNA to the cytoplasm and further processing by Dicer to mature miRNAs. Here, we characterize the human DGCR8, the DiGeorge syndrome critical region gene 8, and its Drosophila melanogaster homolog. We provide biochemical and cell-based readouts to demonstrate the requirement of DGCR8 for the maturation of miRNA primary transcripts. RNAi knockdown experiments of fly and human DGCR8 resulted in accumulation of pri-miRNAs and reduction of pre-miRNAs and mature miRNAs. Our results suggest that DGCR8 and Drosha interact in human cells and reside in a functional pri-miRNA processing complex.

  13. Base-pair opening dynamics of primary miR156a using NMR elucidates structural determinants important for its processing level and leaf number phenotype in Arabidopsis

    PubMed Central

    Kim, Wanhui; Kim, Hee-Eun; Lee, Ae-Ree; Jun, A Rim; Jung, Myeong Gyo; Ahn, Ji Hoon; Lee, Joon-Hwa

    2017-01-01

    MicroRNAs originate from primary transcripts containing hairpin structures. The levels of mature miR156 influence the leaf number prior to flowering in the life cycle of plants. To understand the molecular mechanism of biogenesis of primary miR156a (pri-miR156a) to mature miR156, a base-pair opening dynamics study was performed using model RNAs mimicking the cleavage site of wild type and B5 bulge-stabilizing mutant pri-miR156a constructs. We also determined the mature miR156 levels and measured leaf numbers at flowering of plants overexpressing the wild type and mutant constructs. Our results suggest that the stabilities and/or opening dynamics of the C15·G98 and U16·A97 base-pairs at the cleavage site are essential for formation of the active conformation and for efficient processing of pri-miR156a, and that mutations of the B5 bulge can modulate mature miR156 levels as well as miR156-driven leaf number phenotypes via changes in the base-pair stability of the cleavage site. PMID:27574118

  14. Molecular, clinical and neuropsychological study in 31 patients with Kabuki syndrome and KMT2D mutations.

    PubMed

    Lehman, Natacha; Mazery, Anne Claire; Visier, Antoine; Baumann, Clarisse; Lachesnais, Dominique; Capri, Yline; Toutain, Annick; Odent, Sylvie; Mikaty, Myriam; Goizet, Cyril; Taupiac, Emmanuelle; Jacquemont, Marie Line; Sanchez, Elodie; Schaefer, Elise; Gatinois, Vincent; Faivre, Laurence; Minot, Delphine; Kayirangwa, Honorine; Le Qang Sang, Kim-Hanh; Boddaert, Nathalie; Bayard, Sophie; Lacombe, Didier; Moutton, Sébastien; Touitou, Isabelle; Rio, Marlène; Amiel, Jeanne; Lyonnet, Stanislas; Sanlaville, Damien; Picot, Marie Christine; Geneviève, David

    2017-03-14

    Kabuki syndrome (KS - OMIM 147920) is a rare developmental disease characterized by the association of multiple congenital anomalies and intellectual disability. This study aimed to investigate intellectual performance in children with Kabuki syndrome and link the performance to several clinical features and molecular data. We recruited 31 children with KMT2D mutations who were 6 to 16 years old. They all completed the Weschler Intelligence Scale for Children, fourth edition. We calculated all indexes: the Full Scale Intellectual Quotient (FSIQ), Verbal Comprehension Index (VCI), Perceptive Reasoning Index (PRI), Processing Speed Index (PSI), and Working Memory Index (WMI). In addition, molecular data and several clinical symptoms were studied. FSIQ and VCI scores were 10 points lower for patients with a truncating mutation than other types of mutations. In addition, scores for FSIQ, VCI and PRI were lower for children with visual impairment than normal vision. We also identified a discrepancy in indexes characterized by high WMI and VCI and low PRI and PSI. We emphasize the importance of early identification and intensive care of visual disorders in patients with Kabuki syndrome and recommend individual assessment of intellectual profile.

  15. Design of a small molecule against an oncogenic noncoding RNA

    PubMed Central

    Velagapudi, Sai Pradeep; Cameron, Michael D.; Haga, Christopher L.; Rosenberg, Laura H.; Lafitte, Marie; Duckett, Derek R.; Phinney, Donald G.; Disney, Matthew D.

    2016-01-01

    The design of precision, preclinical therapeutics from sequence is difficult, but advances in this area, particularly those focused on rational design, could quickly transform the sequence of disease-causing gene products into lead modalities. Herein, we describe the use of Inforna, a computational approach that enables the rational design of small molecules targeting RNA to quickly provide a potent modulator of oncogenic microRNA-96 (miR-96). We mined the secondary structure of primary microRNA-96 (pri-miR-96) hairpin precursor against a database of RNA motif–small molecule interactions, which identified modules that bound RNA motifs nearby and in the Drosha processing site. Precise linking of these modules together provided Targaprimir-96 (3), which selectively modulates miR-96 production in cancer cells and triggers apoptosis. Importantly, the compound is ineffective on healthy breast cells, and exogenous overexpression of pri-miR-96 reduced compound potency in breast cancer cells. Chemical Cross-Linking and Isolation by Pull-Down (Chem-CLIP), a small-molecule RNA target validation approach, shows that 3 directly engages pri-miR-96 in breast cancer cells. In vivo, 3 has a favorable pharmacokinetic profile and decreases tumor burden in a mouse model of triple-negative breast cancer. Thus, rational design can quickly produce precision, in vivo bioactive lead small molecules against hard-to-treat cancers by targeting oncogenic noncoding RNAs, advancing a disease-to-gene-to-drug paradigm. PMID:27170187

  16. Design of a small molecule against an oncogenic noncoding RNA.

    PubMed

    Velagapudi, Sai Pradeep; Cameron, Michael D; Haga, Christopher L; Rosenberg, Laura H; Lafitte, Marie; Duckett, Derek R; Phinney, Donald G; Disney, Matthew D

    2016-05-24

    The design of precision, preclinical therapeutics from sequence is difficult, but advances in this area, particularly those focused on rational design, could quickly transform the sequence of disease-causing gene products into lead modalities. Herein, we describe the use of Inforna, a computational approach that enables the rational design of small molecules targeting RNA to quickly provide a potent modulator of oncogenic microRNA-96 (miR-96). We mined the secondary structure of primary microRNA-96 (pri-miR-96) hairpin precursor against a database of RNA motif-small molecule interactions, which identified modules that bound RNA motifs nearby and in the Drosha processing site. Precise linking of these modules together provided Targaprimir-96 (3), which selectively modulates miR-96 production in cancer cells and triggers apoptosis. Importantly, the compound is ineffective on healthy breast cells, and exogenous overexpression of pri-miR-96 reduced compound potency in breast cancer cells. Chemical Cross-Linking and Isolation by Pull-Down (Chem-CLIP), a small-molecule RNA target validation approach, shows that 3 directly engages pri-miR-96 in breast cancer cells. In vivo, 3 has a favorable pharmacokinetic profile and decreases tumor burden in a mouse model of triple-negative breast cancer. Thus, rational design can quickly produce precision, in vivo bioactive lead small molecules against hard-to-treat cancers by targeting oncogenic noncoding RNAs, advancing a disease-to-gene-to-drug paradigm.

  17. Predictive value of laboratory hematological parameters for thromboses development in patients with spontaneous and radiation associated Ph negative myeloproliferative neoplasms.

    PubMed

    Mishcheniuk, O Yu; Klymenko, S V

    2015-12-01

    Meta. Vstanovyty, iaki z gematologichnykh pokaznykiv maiut' dyskryminatsiynu zdatnist' dlia prognozuvannia rozvyt ku tromboziv pry spontannykh ta radiatsiyno asotsiyovanykh Rh negatyvnykh miieloproliferatyvnykh novoutvoren niakh (MPN).Materialy i metody doslidzhennia. Proanalizovano gematologichni pokaznyky 85 khvorykh na spravzhniu politsy temiiu (SP), 43 – esentsial'nu trombotsytemiiu (ET) ta 40 – pervynnyy miielofibroz (PMF). Osnovnu grupu sklaly patsiienty (SP = 18, ET = 6, PMF = 18), iaki zaznaly diI ionizuiuchoI radiatsiI vnaslidok avariI na ChAES, a kontrol'nu – khvori (SP = 67, ET = 37, PMF = 22) bez vplyvu avariynogo radiatsiynogo oprominennia v anamnezi.Rezul'taty. Predyktyvne shchodo rozvytku tromboziv pry spontanniy SP znachennia gematokrytu ta leykotsytiv sta novyt' > 55 % ta > 13,2 · 109/l vidpovidno, a zagal'nogo kholesterynu – > 5,7 mmol'/l. Efektyvnist' dlia progno zuvannia tromboziv faktora „gematokryt > 55 % (ploshcha pid kryvoiu – PPK = 0,67; r = 0,023) ta „leykotsyty > 13,2 · 109/l ” (PPK = 0,66; r = 0,011) ie seredn'oiu, a „zagal'nyy kholesteryn > 5,7 mmol'/l ” (PPK = 0,92; r < 0,0001) – vidminnoiu. Prognostychnoiu shchodo vynyknennia tromboziv pry radiatsiyno asotsiyovaniy SP ta spontanniy ET vyia vylas' kil'kist' trombotsytiv < 440,0 · 109/l ta leykotsytiv > 10,0 · 109/l vidpovidno, iaka kharakteryzuiet'sia duzhe dobroiu (PPK = 0,84; r = 0,0002 ta PPK = 0,72; r = 0,019 vidpovidno) predyktyvnoiu potuzhnistiu. V osnovniy ta kontrol'niy grupi khvorykh na SP vyznacheno odnakovi PPK zastosuvannia dlia prognozuvannia tromboziv pokaznyka „gematokryt > 55 % ” (r = 0,800) ta „leykotsyty > 13,2 · 109/l ” (r = 0,831), prote rizni PPK rozrakhovano dlia mar kera „trombotsyty < 440,0 · 109/l ” (r = 0,0004). Tomu pokaznyk „trombotsyty < 440,0·109/l ” dorechno vrakhovuvaty pry otsintsi ymovirnosti trombozu za radiatsiyno asotsiyovanoI SP, a „gematokryt > 55% ” ta „leykotsyty > 13,2 · 109/l ”

  18. TU-F-12A-03: Using 18F-FDG-PET-CT and Deformable Registration During Head-And-Neck Cancer (HNC) Intensity Modulated Radiotherapy (IMRT) to Predict Treatment Response

    SciTech Connect

    Vergalasova, I; Mowery, Y; Yoo, D; Brizel, D; Das, S

    2014-06-15

    Purpose: To evaluate the effect of deformable vs. rigid registration of pre-treatment 18F-FDG-PET-CT to intra-treatment 18F-FDG-PET-CT on different standardized uptake value (SUV) parameters and investigate which parameters correlate best with post-treatment response in patients undergoing IMRT for HNC. Methods: Pre-treatment and intra-treatment PET-CT (after 20Gy) scans were acquired, in addition to a 12 week post-treatment PET-CT to assess treatment response. Primary and lymph node gross tumor volumes (GTV-PRI and GTV-LN) were contoured on the pre-treatment CT. These contours were then mapped to intra-treatment PET images via rigid and deformable registration. Absolute changes from pre- to intra-treatment scans for rigid and deformable registration were extracted for the following parameters: SUV-MAX, SUV-MEAN, SUV-20%, SUV-40%, and SUV-60% (SUV-X% is the minimum SUV to the highest-intensity X% volume). Results: Thirty-eight patients were evaluated, with 27 available for classification as complete or incomplete response (CR/ICR). The pre-treatment average tumor volumes for the patients were 24.05cm{sup 3} for GTV-PRI and 23.4cm{sup 3} for GTV-LN. For GTV-PRI, there was no statistically significant difference between rigid vs. deformable registration across all ΔSUV parameters. For GTV-LN contours, all parameters were significantly different except for ΔSUV-MAX. For deformably-registered GTV-PRI, changes in the following metrics were significantly different for CR vs. ICR: SUV-MEAN(p=0.003), SUV-20%(p=0.02), SUV-40%(p=0.02), and SUV-60%(p=0.008). The following cutoff values separated CR from ICR with high sensitivity and specificity: ΔSUV-MEAN=1.49, ΔSUV-20%=2.39, ΔSUV-40%=1.80 and ΔSUV-60%=1.31. Corresponding areas under the Receiver Operating Characteristics curve were 0.90, 0.81, 0.81, and 0.85, respectively. Conclusion: Rigidly and deformably registered contours yielded statistically similar SUV parameters for GTV-PRI, but not GTV-LN. This implies that

  19. Effects of partial root-zone irrigation on hydraulic conductivity in the soil–root system of maize plants

    PubMed Central

    Hu, Tiantian; Kang, Shaozhong; Li, Fusheng; Zhang, Jianhua

    2011-01-01

    Effects of partial root-zone irrigation (PRI) on the hydraulic conductivity in the soil–root system (Lsr) in different root zones were investigated using a pot experiment. Maize plants were raised in split-root containers and irrigated on both halves of the container (conventional irrigation, CI), on one side only (fixed PRI, FPRI), or alternately on one of two sides (alternate PRI, APRI). Results show that crop water consumption was significantly correlated with Lsr in both the whole and irrigated root zones for all three irrigation methods but not with Lsr in the non-irrigated root zone of FPRI. The total Lsr in the irrigated root zone of two PRIs was increased by 49.0–92.0% compared with that in a half root zone of CI, suggesting that PRI has a significant compensatory effect of root water uptake. For CI, the contribution of Lsr in a half root zone to Lsr in the whole root zone was ∼50%. For FPRI, the Lsr in the irrigated root zone was close to that of the whole root zone. As for APRI, the Lsr in the irrigated root zone was greater than that of the non-irrigated root zone. In comparison, the Lsr in the non-irrigated root zone of APRI was much higher than that in the dried zone of FPRI. The Lsr in both the whole and irrigated root zones was linearly correlated with soil moisture in the irrigated root zone for all three irrigation methods. For the two PRI treatments, total water uptake by plants was largely determined by the soil water in the irrigated root zone. Nevertheless, the non-irrigated root zone under APRI also contributed to part of the total crop water uptake, but the continuously non-irrigated root zone under FPRI gradually ceased to contribute to crop water uptake, suggesting that it is the APRI that can make use of all the root system for water uptake, resulting in higher water use efficiency. PMID:21527627

  20. Development and validation of a continuously age-adjusted measure of patient condition for hospitalized children using the electronic medical record.

    PubMed

    Rothman, Michael J; Tepas, Joseph J; Nowalk, Andrew J; Levin, James E; Rimar, Joan M; Marchetti, Albert; Hsiao, Allen L

    2017-02-01

    Awareness of a patient's clinical status during hospitalization is a primary responsibility for hospital providers. One tool to assess status is the Rothman Index (RI), a validated measure of patient condition for adults, based on empirically derived relationships between 1-year post-discharge mortality and each of 26 clinical measurements available in the electronic medical record. However, such an approach cannot be used for pediatrics, where the relationships between risk and clinical variables are distinct functions of patient age, and sufficient 1-year mortality data for each age group simply do not exist. We report the development and validation of a new methodology to use adult mortality data to generate continuously age-adjusted acuity scores for pediatrics. Clinical data were extracted from EMRs at three pediatric hospitals covering 105,470 inpatient visits over a 3-year period. The RI input variable set was used as a starting point for the development of the pediatric Rothman Index (pRI). Age-dependence of continuous variables was determined by plotting mean values versus age. For variables determined to be age-dependent, polynomial functions of mean value and mean standard deviation versus age were constructed. Mean values and standard deviations for adult RI excess risk curves were separately estimated. Based on the "find the center of the channel" hypothesis, univariate pediatric risk was then computed by applying a z-score transform to adult mean and standard deviation values based on polynomial pediatric mean and standard deviation functions. Multivariate pediatric risk is estimated as the sum of univariate risk. Other age adjustments for categorical variables were also employed. Age-specific pediatric excess risk functions were compared to age-specific expert-derived functions and to in-hospital mortality. AUC for 24-h mortality and pRI scores prior to unplanned ICU transfers were computed. Age-adjusted risk functions correlated well with similar

  1. CO and NO bind to Fe(II) DiGeorge critical region 8 heme but do not restore primary microRNA processing activity.

    PubMed

    Hines, Judy P; Smith, Aaron T; Jacob, Jose P; Lukat-Rodgers, Gudrun S; Barr, Ian; Rodgers, Kenton R; Guo, Feng; Burstyn, Judith N

    2016-12-01

    The RNA-binding heme protein DiGeorge critical region 8 (DGCR8) and its ribonuclease partner Drosha cleave primary transcripts of microRNA (pri-miRNA) as part of the canonical microRNA (miRNA) processing pathway. Previous studies show that bis-cysteine thiolate-coordinated Fe(III) DGCR8 supports pri-miRNA processing activity, while Fe(II) DGCR8 does not. In this study, we further characterized Fe(II) DGCR8 and tested whether CO or NO might bind and restore pri-miRNA processing activity to the reduced protein. Fe(II) DGCR8 RNA-binding heme domain (Rhed) undergoes a pH-dependent transition from 6-coordinate to 5-coordinate, due to protonation and loss of a lysine ligand; the ligand bound throughout the pH change is a histidine. Fe(II) Rhed binds CO and NO from 6- and 5-coordinate states, forming common CO and NO adducts at all pHs. Fe(II)-CO Rhed is 6-coordinate, low-spin, and pH insensitive with the histidine ligand retained, suggesting that the protonatable lysine ligand has been replaced by CO. Fe(II)-NO Rhed is 5-coordinate and pH insensitive. Fe(II)-NO also forms slowly upon reaction of Fe(III) Rhed with excess NO via a stepwise process. Heme reduction by NO is rate-limiting, and the rate would be negligible at physiological NO concentrations. Importantly, in vitro pri-miRNA processing assays show that both CO- and NO-bound DGCR8 species are inactive. Fe(II), Fe(II)-CO, and Fe(II)-NO Rhed do not bear either of the cysteine ligands found in the Fe(III) state. These data support a model in which the bis-cysteine thiolate ligand environment of Fe(III) DGCR8 is necessary for establishing proper pri-miRNA binding and enabling processing activity.

  2. Seasonal trends of spectral indexes for monitoring GPP in a Mediterranean cork oak savanna

    NASA Astrophysics Data System (ADS)

    Cerasoli, S.; Silva, J. M. N.; Carvalhais, N.; Silva, F.; López, G.; Pereira, J. M. C.; Pereira, J. S.

    2012-04-01

    It is nowadays clear that the inclusion of spectral indexes into biogeochemical models can greatly improve actual estimates of gross primary productivity (GPP) at local and global scale. Several vegetation indexes can be obtained by the reflectance of light at specific wavelengths. Among them, the Normalized Vegetation Index (NDVI), the Enhanced Vegetation Index (EVI) and the Photochemical Reflectance Index (PRI) were found suitable to represent different characteristics of ecosystems strictly related with GPP, such as biomass and photosynthetic capacity (NDVI, EVI) or radiation use efficiency (PRI). In Mediterranean cork oak savannas, characterized by high heterogeneity, the application of spectral indexes derived from coarse spatial resolution remotely sensed data (e.g. MODIS imagery) to represent the performance of the whole ecosystem is complex. A better knowledge of the variability of vegetation indexes for specific vegetation types, assessed in fieldwork, is fundamental to the interpretation of the same indexes obtained with satellite data and a key step through the integration of such indexes into biogeochemical models. We consider three different vegetation types: trees, grasses and shrubs, concurring to the overall ecosystem carbon budget in Mediterranean cork oak savannas. Since April 2011, reflectance measurements were performed in the range of 300-2500nm by the use of a handheld hyperspectral spectroradiometer (FieldSpec3, ASD Inc. CO, USA) in several species of the three vegetation types in a cork oak savanna eddy covariance site located in central Portugal. Measurements were always performed around solar noon and repeated approximately every two weeks. Several vegetation indexes were calculated. All indexes showed clear differences among vegetation types and among species. Marked seasonal trends were identified for grasses and shrubs, clearly related with the onset of dry summer conditions. Both NDVI and EVI decreased in grasses from April to the

  3. Caenorhabditis elegans period homolog lin-42 regulates the timing of heterochronic miRNA expression.

    PubMed

    McCulloch, Katherine A; Rougvie, Ann E

    2014-10-28

    MicroRNAs (miRNAs) are small RNAs that regulate gene expression posttranscriptionally via the 3' UTR of target mRNAs and were first identified in the Caenorhabditis elegans heterochronic pathway. miRNAs have since been found in many organisms and have broad functions, including control of differentiation and pluripotency in humans. lin-4 and let-7-family miRNAs regulate developmental timing in C. elegans, and their proper temporal expression ensures cell lineage patterns are correctly timed and sequentially executed. Although much is known about miRNA biogenesis, less is understood about how miRNA expression is timed and regulated. lin-42, the worm homolog of the circadian rhythm gene period of flies and mammals, is another core component of the heterochronic gene pathway. lin-42 mutants have a precocious phenotype, in which later-stage programs are executed too early, but the placement of lin-42 in the timing pathway is unclear. Here, we demonstrate that lin-42 negatively regulates heterochronic miRNA transcription. let-7 and the related miRNA miR-48 accumulate precociously in lin-42 mutants. This defect reflects transcriptional misregulation because enhanced expression of both primary miRNA transcripts (pri-miRNAs) and a let-7 promoter::gfp fusion are observed. The pri-miRNA levels oscillate during larval development, in a pattern reminiscent of lin-42 expression. Importantly, we show that lin-42 is not required for this cycling; instead, peak amplitude is increased. Genetic analyses further confirm that lin-42 acts through let-7 family miRNAs. Taken together, these data show that a key function of lin-42 in developmental timing is to dampen pri-miRNAs levels, preventing their premature expression as mature miRNAs.

  4. Photosynthesis, chlorophyll fluorescence and spectral reflectance in Sphagnum moss at varying water contents.

    PubMed

    Van Gaalen, K Eric; Flanagan, Lawrence B; Peddle, Derek R

    2007-08-01

    Moss samples from the Fluxnet-Canada western peatland flux station in the Boreal Region of Alberta were measured in the laboratory to obtain the net photosynthesis rate and chlorophyll fluorescence of the moss under controlled environmental conditions, including the regulation of moss water content, simultaneously with measurements of moss spectral reflectance. One objective was to test whether the photochemical reflectance index (PRI) detected changes in moss photosynthetic light-use efficiency that were consistent with short-term (minutes to hours) changes in xanthophyll cycle pigments and associated changes in non-photochemical quenching (NPQ), as recorded by chlorophyll fluorescence. The rate of net photosynthesis was strongly inhibited by water content at values exceeding approximately 9 (fresh weight/dry weight) and declined as the water content fell below values of approximately 8. Chlorophyll fluorescence measurements of maximum photosystem II efficiency generally remained high until the water content was reduced from the maximum of about 20 to values of approximately 10-11, and then declined with further reductions in moss water content. A significant linear decline in NPQ was observed as moss water content was reduced from maximum to low water content values. There was a strong negative correlation between changes in NPQ and PRI. These data suggest that PRI measurements are a good proxy for short-term shifts in photosynthetic activity in Sphagnum moss. A second objective was to test how accurately the water band index (WBI, ratio of reflectance at 900 and 970 nm) recorded changes in moss water content during controlled laboratory studies. Strong linear relationships occurred between changes in moss water content and the WBI, although the slopes of the linear relationships were significantly different among sample replicates. Therefore, WBI appeared to be a useful tool to determine sample-specific water content without destructive measurements.

  5. Co-sorption of ofloxacin and Cu(II) in soils before and after organic matter removal.

    PubMed

    Wu, Di; Li, Hao; Liao, Shaohua; Sun, Xiaolong; Peng, Hongbo; Zhang, Di; Pan, Bo

    2014-05-15

    Various mechanisms play roles simultaneously for antibiotic sorption on solid particles. Previous studies simply emphasized mechanisms that match the increased or decreased antibiotic sorption by metal ions, without a general concept including these diverse mechanisms in their co-sorption. We observed both increased and decreased OFL and Cu(II) sorption in their co-sorption system. The comparison of the sorption coefficients of primary adsorbate (Kd(pri)) and co-adsorbate (Kd(co)) suggested that enhanced sorption occurred at high Kd(pri) region (low primary adsorbate concentration). Competitive sorption was observed when Kd(pri) was decreased to a certain value depending on solid particle properties. We thus summarized that if the adsorbates were introduced with low concentrations, OFL (such as hydrophobic region in solid particles) and Cu(II) (such as inner-sphere complexation sites) occupied their unique high-energy sorption sites. Cu(II) complexed with the adsorbed OFL, and OFL bridged by the adsorbed Cu(II) promoted the sorption for both chemicals. With the increased concentrations, the adsorbates spread to some common sorption sites with low sorption energy, such as cation exchange and electrostatic attraction region. The overlapping of Cu(II) and OFL on these sorption sites resulted in competitive sorption at high concentrations. The previously reported apparently increased or decreased sorption in antibiotic-metal ion co-sorption system may be only a part of the whole picture. Extended study on the turning point of decreased and increased sorption relating to water chemistry conditions and solid particle properties will provide more useful information to predict antibiotic-metal ion co-sorption.

  6. RNA-binding protein DUS16 plays an essential role in primary miRNA processing in the unicellular alga Chlamydomonas reinhardtii.

    PubMed

    Yamasaki, Tomohito; Onishi, Masayuki; Kim, Eun-Jeong; Cerutti, Heriberto; Ohama, Takeshi

    2016-09-20

    Canonical microRNAs (miRNAs) are embedded in duplexed stem-loops in long precursor transcripts and are excised by sequential cleavage by DICER nuclease(s). In this miRNA biogenesis pathway, dsRNA-binding proteins play important roles in animals and plants by assisting DICER. However, these RNA-binding proteins are poorly characterized in unicellular organisms. Here we report that a unique RNA-binding protein, Dull slicer-16 (DUS16), plays an essential role in processing of primary-miRNA (pri-miRNA) transcripts in the unicellular green alga Chlamydomonas reinhardtii In animals and plants, dsRNA-binding proteins involved in miRNA biogenesis harbor two or three dsRNA-binding domains (dsRBDs), whereas DUS16 contains one dsRBD and also an ssRNA-binding domain (RRM). The null mutant of DUS16 showed a drastic reduction in most miRNA species. Production of these miRNAs was complemented by expression of full-length DUS16, but the expression of RRM- or dsRBD-truncated DUS16 did not restore miRNA production. Furthermore, DUS16 is predominantly localized to the nucleus and associated with nascent (unspliced form) pri-miRNAs and the DICER-LIKE 3 protein. These results suggest that DUS16 recognizes pri-miRNA transcripts cotranscriptionally and promotes their processing into mature miRNAs as a component of a microprocessor complex. We propose that DUS16 is an essential factor for miRNA production in Chlamydomonas and, because DUS16 is functionally similar to the dsRNA-binding proteins involved in miRNA biogenesis in animals and land plants, our report provides insight into this mechanism in unicellular eukaryotes.

  7. Intron Lariat RNA Inhibits MicroRNA Biogenesis by Sequestering the Dicing Complex in Arabidopsis

    PubMed Central

    Cheng, Jinping; Su, Chuanbin; Zhong, Songxiao; Liu, Qi; Fang, Yuda; Yu, Yao; Lv, Hong; Zheng, Yun

    2016-01-01

    Lariat RNAs formed as by-products of splicing are quickly degraded by the RNA debranching enzyme 1 (DBR1), leading to their turnover. Null dbr1 mutants in both animals and plants are embryo lethal, but the mechanism underlying the lethality remains unclear. Here we characterized a weak mutant allele of DBR1 in Arabidopsis, dbr1-2, and showed that a global increase in lariat RNAs was unexpectedly accompanied by a genome-wide reduction in miRNA accumulation. The dbr1-2 mutation had no effects on expression of miRNA biogenesis genes or primary miRNAs (pri-miRNAs), but the association of pri-miRNAs with the DCL1/HYL1 dicing complex was impaired. Lariat RNAs were associated with the DCL1/HYL1 dicing complex in vivo and competitively inhibited the binding of HYL1 with pri-miRNA. Consistent with the impacts of lariat RNAs on miRNA biogenesis, over-expression of lariat RNAs reduced miRNA accumulation. Lariat RNAs localized in nuclear bodies, and partially co-localize with HYL1, and both DCL1 and HYL1 were mis-localized in dbr1-2. Together with our findings that nearly four hundred lariat RNAs exist in wild type plants and that these lariat RNAs also associate with the DCL1/HYL1 dicing complex in vivo, we thus propose that lariat RNAs, as decoys, inhibit miRNA processing, suggesting a hitherto unknown layer of regulation in miRNA biogenesis. PMID:27870853

  8. Pregnancy risk among black, white, and Hispanic teen girls in New York City public schools.

    PubMed

    Waddell, Elizabeth Needham; Orr, Mark G; Sackoff, Judith; Santelli, John S

    2010-05-01

    Disparities in teen pregnancy rates are explained by different rates of sexual activity and contraceptive use. Identifying other components of risk such as race/ethnicity and neighborhood can inform strategies for teen pregnancy prevention. Data from the 2005 and 2007 New York City Youth Risk Behavior Surveys were used to model demographic differences in odds of recent sexual activity and birth control use among black, white, and Hispanic public high school girls. Overall pregnancy risk was calculated using pregnancy risk index (PRI) methodology, which estimates probability of pregnancy based on current sexual activity and birth control method at last intercourse. Factors of race/ethnicity, grade level, age, borough, and school neighborhood were assessed. Whites reported lower rates of current sexual activity (23.4%) than blacks (35.4%) or Hispanics (32.7%), and had lower predicted pregnancy risk (PRI = 5.4% vs. 9.0% and 10.5%, respectively). Among sexually active females, hormonal contraception use rates were low in all groups (11.6% among whites, 7.8% among blacks, and 7.5% among Hispanics). Compared to white teens, much of the difference in PRI was attributable to poorer contraceptive use (19% among blacks and 50% among Hispanics). Significant differences in contraceptive use were also observed by school neighborhood after adjusting for age group and race/ethnicity. Interventions to reduce teen pregnancy among diverse populations should include messages promoting delayed sexual activity, condom use and use of highly effective birth control methods. Access to long-acting contraceptive methods must be expanded for all sexually active high school students.

  9. Impact peculiarities of long-term gamma-irradiation with low-dose rate on the development of laboratory rats and their sperm production.

    PubMed

    Klepko, A V; Motrina, O A; Vatlitsova, O S; Andreichenko, K S; Pchelovska, S A; Andreychenko, S V; Gorban, L V

    2015-12-01

    Meta: vyvchyty vplyv dovgotryvalogo gamma-oprominennia z maloiu potuzhnistiu dozy (13kh10-6sGr/s) na rozvytok laboratornykh shchuriv, ikh statevykh organiv, a takozh na kil'kisni pokaznyky spermoutvorennia i kinetychni kharakterystyky spermatozoidiv.Materialy ta metody: doslidy provodyly na laboratornykh bilykh shchurakh vikom 2,5 misiatsiai. Tvaryn oprominiuvaly na ustanovtsi «Etalon» z gamma-polem So-60 v dozakh 0,1–1,0 Gr. U dekapitovanykh tvaryn vyluchaly testykuly,epidydymisy ta ventral'nu prostatu. Na laboratornykh vagakh vyznachaly seredniu vagu tvaryn ta ikh statevykh organiv dlia kozhnoi ekspozytsiinoi dozy oprominennia. Kil'kist' spermatozoidiv v epidydymisakh ta testykulakh vyznachaly za dopomogoiu fazovo-kontrastnoi mikroskopii pislia provedennia gomogenizatsii tkanyny v fiziologichnomu rozchyni, shcho mistyv takozh Tryton Kh-100 i NaN3. Kinetychni kharakterystyky spermatozoidiv analizuvaly za dopomogoiu fotoziomky pry temperaturi 37 oS.Rezul'taty: vstanovleno, shcho dovgotryvale gamma-oprominennia ne poznachaiet'sia na vazi iak tila tvaryn, tak i ikh epidydymisiv. Odnak pomicheno zmenshennia vagy testykul pry dozakh 0,1; 0,3; 0,6 ta 1,0 Gr, a takozh zbil'shennia vagy prostaty pry dozi 1,0 Gr. U oprominenykh tvaryn zmenshuvalys' zagal'na kil'kist' spermatozoidiv v iaiechkakh i denna produktsiia spermatozoidiv. Vidmicheno zbil'shennia priamoliniinoi ta kryvoliniinoi shvydkosti spermatozoidiv, a takozh chastoty ikh khvostovykh kolyvan'.Vysnovok: dovgotryvale total'ne gamma-oprominennia maloi potuzhnosti lyshe v deiakii miri poznachaiet'sia na rozvytku statevykh organiv laboratornykh shchuriv – testykulakh i prostati, a takozh proiavliaiet'sia v neznachnomu prygnichenni spermoutvorennia i zrostanni kinetychnykh kharakterystyk spermatozoidiv.

  10. P2Y12 receptor inhibition and effect of morphine in patients undergoing primary PCI for ST-segment elevation myocardial infarction. The PRIVATE-ATLANTIC study.

    PubMed

    Silvain, Johanne; Storey, Robert F; Cayla, Guillaume; Esteve, Jean-Baptiste; Dillinger, Jean-Guillaume; Rousseau, Hélène; Tsatsaris, Anne; Baradat, Caroline; Salhi, Néjoua; Hamm, Christian W; Lapostolle, Frédéric; Lassen, Jens Flensted; Collet, Jean-Philippe; Ten Berg, Jurriën M; Van't Hof, Arnoud W; Montalescot, Gilles

    2016-08-01

    PRIVATE-ATLANTIC (P2Y12 Receptor Inhibition with VASP Testing using Elisa kit during the ATLANTIC study) is a pre-specified substudy of the randomised, double-blind ATLANTIC trial in patients with ST-segment elevation myocardial infarction, designed to help interpret the main trial results. The primary objective of ATLANTIC was to assess coronary reperfusion prior to percutaneous coronary intervention (PCI) with pre- vs in-hospital ticagrelor 180 mg loading dose (LD). PRIVATE-ATLANTIC assessed platelet inhibition in 37 patients by measurement of vasodilator-associated stimulated phosphoprotein (VASP) platelet reactivity index (PRI) and VerifyNow platelet reactivity units (PRU) before angiogram (T1), immediately after PCI (T2), 1 (T3), and 6 (T4) hours (h) after PCI, and before next study drug administration (T5). The median time difference between the two ticagrelor LD was 41 minutes. Platelet reactivity was unaffected at T1 when measured by VASP-PRI (89.8 vs 93.9 % for pre- and in-hospital ticagrelor, respectively; p = 0.18) or PRU (239 vs 241; p = 0.82). Numerical differences were apparent at T2 and maximal at T3. Morphine administration significantly delayed onset of platelet inhibition at T3 (VASP-PRI 78.2 vs 23.4 % without morphine; p = 0.0116) and T4 (33.1 vs 11.0 %; p = 0.0057). In conclusion, platelet inhibition in ATLANTIC was unaffected by pre-hospital ticagrelor administration at the time of initial angiogram due to the short transfer delay. The maximum difference in platelet inhibition was detected 1 h after PCI (T3). Morphine administration was associated with delayed onset of action of ticagrelor and appeared more important than timing of ticagrelor administration.

  11. Response of green reflectance continuum removal index to the xanthophyll de-epoxidation cycle in Norway spruce needles.

    PubMed

    Kovác, Daniel; Malenovský, Zbyněk; Urban, Otmar; Špunda, Vladimír; Kalina, Jiří; Ač, Alexander; Kaplan, Veroslav; Hanuš, Jan

    2013-04-01

    A dedicated field experiment was conducted to investigate the response of a green reflectance continuum removal-based optical index, called area under the curve normalized to maximal band depth between 511 nm and 557 nm (ANMB511-557), to light-induced transformations in xanthophyll cycle pigments of Norway spruce [Picea abies (L.) Karst] needles. The performance of ANMB511-557 was compared with the photochemical reflectance index (PRI) computed from the same leaf reflectance measurements. Needles of four crown whorls (fifth, eighth, 10th, and 15th counted from the top) were sampled from a 27-year-old spruce tree throughout a cloudy and a sunny day. Needle optical properties were measured together with the composition of the photosynthetic pigments to investigate their influence on both optical indices. Analyses of pigments showed that the needles of the examined whorls varied significantly in chlorophyll content and also in related pigment characteristics, such as the chlorophyll/carotenoid ratio. The investigation of the ANMB511-557 diurnal behaviour revealed that the index is able to follow the dynamic changes in the xanthophyll cycle independently of the actual content of foliar pigments. Nevertheless, ANMB511-557 lost the ability to predict the xanthophyll cycle behaviour during noon on the sunny day, when the needles were exposed to irradiance exceeding 1000 µmol m(-2) s(-1). Despite this, ANMB511-557 rendered a better performance for tracking xanthophyll cycle reactions than PRI. Although declining PRI values generally responded to excessive solar irradiance, they were not able to predict the actual de-epoxidation state in the needles examined.

  12. A novel, fast, HMM-with-Duration implementation – for application with a new, pattern recognition informed, nanopore detector

    PubMed Central

    Winters-Hilt, Stephen; Baribault, Carl

    2007-01-01

    Background Hidden Markov Models (HMMs) provide an excellent means for structure identification and feature extraction on stochastic sequential data. An HMM-with-Duration (HMMwD) is an HMM that can also exactly model the hidden-label length (recurrence) distributions – while the regular HMM will impose a best-fit geometric distribution in its modeling/representation. Results A Novel, Fast, HMM-with-Duration (HMMwD) Implementation is presented, and experimental results are shown that demonstrate its performance on two-state synthetic data designed to model Nanopore Detector Data. The HMMwD experimental results are compared to (i) the ideal model and to (ii) the conventional HMM. Its accuracy is clearly an improvement over the standard HMM, and matches that of the ideal solution in many cases where the standard HMM does not. Computationally, the new HMMwD has all the speed advantages of the conventional (simpler) HMM implementation. In preliminary work shown here, HMM feature extraction is then used to establish the first pattern recognition-informed (PRI) sampling control of a Nanopore Detector Device (on a "live" data-stream). Conclusion The improved accuracy of the new HMMwD implementation, at the same order of computational cost as the standard HMM, is an important augmentation for applications in gene structure identification and channel current analysis, especially PRI sampling control, for example, where speed is essential. The PRI experiment was designed to inherit the high accuracy of the well characterized and distinctive blockades of the DNA hairpin molecules used as controls (or blockade "test-probes"). For this test set, the accuracy inherited is 99.9%. PMID:18047718

  13. RecG Directs DNA Synthesis during Double-Strand Break Repair.

    PubMed

    Azeroglu, Benura; Mawer, Julia S P; Cockram, Charlotte A; White, Martin A; Hasan, A M Mahedi; Filatenkova, Milana; Leach, David R F

    2016-02-01

    Homologous recombination provides a mechanism of DNA double-strand break repair (DSBR) that requires an intact, homologous template for DNA synthesis. When DNA synthesis associated with DSBR is convergent, the broken DNA strands are replaced and repair is accurate. However, if divergent DNA synthesis is established, over-replication of flanking DNA may occur with deleterious consequences. The RecG protein of Escherichia coli is a helicase and translocase that can re-model 3-way and 4-way DNA structures such as replication forks and Holliday junctions. However, the primary role of RecG in live cells has remained elusive. Here we show that, in the absence of RecG, attempted DSBR is accompanied by divergent DNA replication at the site of an induced chromosomal DNA double-strand break. Furthermore, DNA double-stand ends are generated in a recG mutant at sites known to block replication forks. These double-strand ends, also trigger DSBR and the divergent DNA replication characteristic of this mutant, which can explain over-replication of the terminus region of the chromosome. The loss of DNA associated with unwinding joint molecules previously observed in the absence of RuvAB and RecG, is suppressed by a helicase deficient PriA mutation (priA300), arguing that the action of RecG ensures that PriA is bound correctly on D-loops to direct DNA replication rather than to unwind joint molecules. This has led us to put forward a revised model of homologous recombination in which the re-modelling of branched intermediates by RecG plays a fundamental role in directing DNA synthesis and thus maintaining genomic stability.

  14. Remote estimation of net CO2 emission from boreal ecosystems

    NASA Astrophysics Data System (ADS)

    Rogers, C. A.; Strachan, I. B.

    2010-12-01

    Hydroelectricity is the main source of power in the province of Quebec, Canada. While hydroelectricity is considered to be a relatively green source of energy, reservoir creation is a land use change that involves flooding terrestrial ecosystems and thus a loss of greenhouse gas (GHG) uptake as well as direct GHG emission from decomposing vegetation. Both the lost sink for GHGs and direct emission from the reservoir surface must be included in estimating the net GHG emission attributable to the reservoir’s construction. These emissions can be determined using techniques such as eddy covariance, however, such methods are often costly and time consuming, and require frequent access to remote locations. Remote sensing is able to provide spatially continuous data over large areas, minimizing the need for ground based measurements. We tested the ability of the photochemical reflectance index (PRI) and normalized difference vegetation index (NDVI) to predict fluxes of carbon dioxide in areas representative of boreal forests and peatlands flooded by the Eastmain 1 hydroelectric reservoir in the James Bay region of Quebec, Canada. We collected spectral measurements from hand-held and helicopter-based platforms, as well as continuously monitored the indices PRI and NDVI from tower-mounted sensors at a forest and peatland site. We then compared the vegetation indices to net fluxes of carbon dioxide measured by eddy covariance at each site. PRI was related to fluxes at both the forest and peatland sites, suggesting it is possible to remotely estimate carbon dioxide uptake by vegetation in boreal forests and peatlands and thus greenhouse gas emissions resulting from land use changes in boreal regions, such as reservoir inundation.

  15. The morphological changes of mucous membrane of stomach and duodenum of contractor organization personnel, which works in radiation hazard conditions at the object Shelter of Chornobyl NPP.

    PubMed

    Sushko, V O; Nezgovorova, G A; Degtjarova, L V; Kolosynska, O O; Gromadska, V M

    2015-12-01

    Meta doslidzhennia: vyznachennia morfologichnykh osoblyvostei urazhen' slyzovoi obolonky (SO) shlunka ta dvanadtsiatypaloi kyshky (DPK) u personalu, iakyi pratsiuie v radiatsiino nebezpechnykh umovakh na ob’iekti «Ukryttia» Chornobyl's'koi AES (OU) shliakhom endoskopichnogo monitoryngu iz vziattiam biopsiinogo materialu z gastroduodenal'noi zony na etapakh pervynnogo (vkhidnogo) VkhK ta spetsial'nogo medychnogo kontroliu (SpK).Materialy ta metody: provedeno kompleksne klinichne-endoskopichne ta morfologichnogo doslidzhennia z biopsiieiu SO shlunka ta DPK u 126 robitnykiv OU.Rezul'taty: U personalu pidriadnykh pidpryiemstv OU vstanovleni riznoskerovani patomorfologichni zmin SO pry VkhK ta zbil'shennia chastoty ikh vyiavlennia pry obstezhenni pid chas SpK, shcho zagalom vidpovidaly khronichnomu H.pylori-asotsiiovanogo pangastrytu z porushenniam mikrotsyrkuliatsii i trofiky, dysregeneratsiinymy zminamy epitelial'noi vystilky.Vysnovky: dlia personalu pidriadnykh organizatsii, iakyi pryimaie uchast' v radiatsiino-nebezpechnykh robotakh na OU ie kharakternym naiavnist' khronichnogo H.pylori-asotsiiovanogo pangastrytu z zrostanniam chastoty atrofichnykh zmin SO (nemetaplastychnogo chy metaplastychnogo typu) ta rozvytkom erozyvno-vyrazkovykh urazhen' gastroduodenal'noi zony.V robitnykiv, iaki maly poperednii vplyv ionizuiuchogo oprominennia vstanovleno bil'shu chastotu dysregeneratsiinykh (giperplazii / kyshkovoi metaplazii) zmin epiteliiu, shcho vidpovidno pidvyshchuie ryzyk neoplastychnykh transformatsii.Provedennia EGDFS (za neobkhidnosti z biopsiieiu SO) pry VkhK ta nastupnykh etapakh medychnogo kontroliu u personalu, iakyi vykonuie radiatsiino-nebezpechni roboty na OU ie vysokoinformatyvnym dokazovym i neobkhidnym metodom doslidzhennia dlia vyznachennia formy ta stupeniu patologichnykh zmin verkhnikh viddiliv shlunkovo-kyshkovogo traktu dlia poperedzhennia progresuvannia zakhvoriuvannia ta rozvytku uskladnen', zberezhennia zdorov’ia i pratsezdatnosti robitnykiv.

  16. RNA-binding protein DUS16 plays an essential role in primary miRNA processing in the unicellular alga Chlamydomonas reinhardtii

    PubMed Central

    Onishi, Masayuki; Kim, Eun-Jeong; Cerutti, Heriberto; Ohama, Takeshi

    2016-01-01

    Canonical microRNAs (miRNAs) are embedded in duplexed stem–loops in long precursor transcripts and are excised by sequential cleavage by DICER nuclease(s). In this miRNA biogenesis pathway, dsRNA-binding proteins play important roles in animals and plants by assisting DICER. However, these RNA-binding proteins are poorly characterized in unicellular organisms. Here we report that a unique RNA-binding protein, Dull slicer-16 (DUS16), plays an essential role in processing of primary-miRNA (pri-miRNA) transcripts in the unicellular green alga Chlamydomonas reinhardtii. In animals and plants, dsRNA-binding proteins involved in miRNA biogenesis harbor two or three dsRNA-binding domains (dsRBDs), whereas DUS16 contains one dsRBD and also an ssRNA-binding domain (RRM). The null mutant of DUS16 showed a drastic reduction in most miRNA species. Production of these miRNAs was complemented by expression of full-length DUS16, but the expression of RRM- or dsRBD-truncated DUS16 did not restore miRNA production. Furthermore, DUS16 is predominantly localized to the nucleus and associated with nascent (unspliced form) pri-miRNAs and the DICER-LIKE 3 protein. These results suggest that DUS16 recognizes pri-miRNA transcripts cotranscriptionally and promotes their processing into mature miRNAs as a component of a microprocessor complex. We propose that DUS16 is an essential factor for miRNA production in Chlamydomonas and, because DUS16 is functionally similar to the dsRNA-binding proteins involved in miRNA biogenesis in animals and land plants, our report provides insight into this mechanism in unicellular eukaryotes. PMID:27582463

  17. The extent of P2Y12 inhibition by clopidogrel in diabetes mellitus patients with acute coronary syndrome is not related to glycaemic control: roles of white blood cell count and body weight.

    PubMed

    Morel, Olivier; El Ghannudi, Soraya; Hess, Sebastien; Reydel, Antje; Crimizade, Ulun; Jesel, Laurence; Radulescu, Bogdan; Wiesel, Marie L; Gachet, Christian; Ohlmann, Patrick

    2012-08-01

    It was the study objective to determine whether glycaemic control affects the extent of platelet inhibition by thienopyridines as assessed by vasodilator-stimulated phosphoprotein flow cytometry (VASP-FCT) in patients with diabetes mellitus (DM) undergoing percutaneous coronary intervention (PCI) during acute coronary syndrome (ACS). Although the proportion of high on-treatment residual platelet reactivity is higher in DM, the contributions of glycaemic control and other factors associated with DM, such as excess body weight and inflammation, to this impaired platelet inhibition by thienopyridines have not yet been fully characterised. In this study, the extent of P2Y12 ADP receptor pathway inhibition was evaluated by the VASP-FCT. Platelet activation was expressed as the platelet reactivity index (PRI). Low response to clopidogrel (LR) was defined as a PRI of >61%. Four hundred forty-five consecutive ACS patients (DM = 160, NDM = 285) were enrolled. The proportion of LR was higher in DM patients (50 vs. 37.5%). In DM, PRI was not correlated with glycosylated haemoglobin (HbA1c) or glycaemia. In a univariate analysis, LR was associated with age, male sex, overweight, and white blood cell count (WBC). In a multivariate analysis, WBC >10,000 and body weight >80 kg were the sole independent predictors of LR to clopidogrel (hazard ratio (HR) 3.02 [1.36-6.68], p=0.006 and HR 2.47 [1.14-5.35], p = 0.021, respectively). Conversely, in non-DM patients, ST-elevation myocardial infarction was the sole independent predictor of LR. In conclusion, in ACS DM patients undergoing PCI, the extent of P2Y12 inhibition by clopidogrel is not related to glycaemic control but is related to body weight and inflammatory status as assessed by the WBC.

  18. Involvement of microRNA-related regulatory pathways in the glucose-mediated control of Arabidopsis early seedling development

    PubMed Central

    Vincentz, Michel

    2013-01-01

    In plants, sugars such as glucose act as signalling molecules that promote changes in gene expression programmes that impact on growth and development. Recent evidence has revealed the potential importance of controlling mRNA decay in some aspects of glucose-mediated regulatory responses suggesting a role of microRNAs (miRNAs) in these responses. In order to get a better understanding of glucose-mediated development modulation involving miRNA-related regulatory pathways, early seedling development of mutants impaired in miRNA biogenesis (hyl1-2 and dcl1-11) and miRNA activity (ago1-25) was evaluated. All mutants exhibited a glucose hyposensitive phenotype from germination up to seedling establishment, indicating that miRNA regulatory pathways are involved in the glucose-mediated delay of early seedling development. The expression profile of 200 miRNA primary transcripts (pri-miRs) was evaluated by large-scale quantitative real-time PCR profiling, which revealed that 38 pri-miRs were regulated by glucose. For several of them, the corresponding mature miRNAs are known to participate directly or indirectly in plant development, and their accumulation was shown to be co-regulated with the pri-miR by glucose. Furthermore, the expression of several miRNA target genes was found to be deregulated in response to glucose in the miRNA machinery mutants ago1-25, dcl1-11, and hyl1-2. Also, in these mutants, glucose promoted misexpression of genes for the three abscisic acid signalling elements ABI3, ABI4, and ABI5. Thus, miRNA regulatory pathways play a role in the adjustments of growth and development triggered by glucose signalling. PMID:23997203

  19. Analysis of Heme Iron Coordination in DGCR8: The Heme-Binding Component of the Microprocessor Complex.

    PubMed

    Girvan, Hazel M; Bradley, Justin M; Cheesman, Myles R; Kincaid, James R; Liu, Yilin; Czarnecki, Kazimierz; Fisher, Karl; Leys, David; Rigby, Stephen E J; Munro, Andrew W

    2016-09-13

    DGCR8 is the RNA-binding partner of the nuclease Drosha. Their complex (the "Microprocessor") is essential for processing of long, primary microRNAs (pri-miRNAs) in the nucleus. Binding of heme to DGCR8 is essential for pri-miRNA processing. On the basis of the split Soret ultraviolet-visible (UV-vis) spectrum of ferric DGCR8, bis-thiolate sulfur (cysteinate, Cys(-)) heme iron coordination of DGCR8 heme iron was proposed. We have characterized DGCR8 heme ligation using the Δ276 DGCR8 variant and combined electron paramagnetic resonance (EPR), magnetic circular dichroism (MCD), electron nuclear double resonance, resonance Raman, and electronic absorption spectroscopy. These studies indicate DGCR8 bis-Cys heme iron ligation, with conversion from bis-thiolate (Cys(-)/Cys(-)) axial coordination in ferric DGCR8 to bis-thiol (CysH/CysH) coordination in ferrous DGCR8. Pri-miRNA binding does not perturb ferric DGCR8's optical spectrum, consistent with the axial ligand environment being separated from the substrate-binding site. UV-vis absorption spectra of the Fe(II) and Fe(II)-CO forms indicate discrete species exhibiting peaks with absorption coefficients substantially larger than those for ferric DGCR8 and that previously reported for a ferrous form of DGCR8. Electron-nuclear double resonance spectroscopy data exclude histidine or water as axial ligands for ferric DGCR8 and favor bis-thiolate coordination in this form. UV-vis MCD and near-infrared MCD provide data consistent with this conclusion. UV-vis MCD data for ferrous DGCR8 reveal features consistent with bis-thiol heme iron coordination, and resonance Raman data for the ferrous-CO form are consistent with a thiol ligand trans to the CO. These studies support retention of DGCR8 cysteine coordination upon reduction, a conclusion distinct from those of previous studies of a different ferrous DGCR8 isoform.

  20. A heterotrimer model of the complete Microprocessor complex revealed by single-molecule subunit counting.

    PubMed

    Herbert, Kristina M; Sarkar, Susanta K; Mills, Maria; Delgado De la Herran, Hilda C; Neuman, Keir C; Steitz, Joan A

    2016-02-01

    During microRNA (miRNA) biogenesis, the Microprocessor complex (MC), composed minimally of Drosha, an RNaseIII enzyme, and DGCR8, a double-stranded RNA-binding protein, cleaves the primary-miRNA (pri-miRNA) to release the pre-miRNA stem-loop structure. Size-exclusion chromatography of the MC, isolated from mammalian cells, suggested multiple copies of one or both proteins in the complex. However, the exact stoichiometry was unknown. Initial experiments suggested that DGCR8 bound pri-miRNA substrates specifically, and given that Drosha could not be bound or cross-linked to RNA, a sequential model for binding was established in which DGCR8 bound first and recruited Drosha. Therefore, many laboratories have studied DGCR8 binding to RNA in the absence of Drosha and have shown that deletion constructs of DGCR8 can multimerize in the presence of RNA. More recently, it was demonstrated that Drosha can bind pri-miRNA substrates in the absence of DGCR8, casting doubt on the sequential model of binding. In the same study, using a single-molecule photobleaching assay, fluorescent protein-tagged deletion constructs of DGCR8 and Drosha assembled into a heterotrimeric complex on RNA, comprising two DGCR8 molecules and one Drosha molecule. To determine the stoichiometry of Drosha and DGCR8 within the MC in the absence of added RNA, we also used a single-molecule photobleaching assay and confirmed the heterotrimeric model of the human MC. We demonstrate that a heterotrimeric complex is likely preformed in the absence of RNA and exists even when full-length proteins are expressed and purified from human cells, and when hAGT-derived tags are used rather than fluorescent proteins.

  1. A Genetic Variant in Primary miR-378 Is Associated with Risk and Prognosis of Hepatocellular Carcinoma in a Chinese Population

    PubMed Central

    An, Jiaze; Liu, Jibin; Liu, Li; Liu, Yao; Pan, Yun; Huang, Mingde; Qi, Fuzhen; Wen, Juan; Xie, Kaipeng; Ma, Hongxia; Shen, Hongbing; Hu, Zhibin

    2014-01-01

    Background MiR-378 has been reported to be related to cell survival, tumor growth and angiogenesis and may participate in hepatocellular carcinoma (HCC) development and prognosis. Genetic variants in primary miR-378 (pri-miR-378) may impact miR-378 expression and contribute to HCC risk and survival. This study aimed to assess the associations between a genetic variant in primary miR-378 and HCC susceptibility and prognosis. Methods We conducted a case-control study to analyze the association of rs1076064 in pri-miR-378 with hepatocellular carcinoma risk in 1300 HCC patients with positive hepatitis B virus (HBV) and 1344 HBV carriers. Then, we evaluated the correlation between the polymorphism and hepatocellular carcinoma prognosis in 331 HCC patients at either intermediate or advanced stage without surgical treatment. Results The variant genotypes of rs1076064 were associated with a decreased HCC risk in HBV carriers [Adjusted odds ratio (OR) = 0.90, 95% confidence intervals (CI) = 0.81–1.00, P = 0.047]. Moreover, HCC patients with the variant genotypes were associated with a better survival [Adjusted hazard ratio (HR) = 0.70, 95% CIs = 0.59–0.83, P<0.0001 in an additive genetic model]. The reporter gene assay showed that the variant G allele of rs1076064 exerted higher promoter activity than the A allele. Conclusions These findings indicate that rs1076064 may be a biomarker for HCC susceptibility and prognosis through altering pri-miR-378 transcription. PMID:24751683

  2. Interaction Between Object-Based Attention and Pertinence Values Shapes the Attentional Priority Map of a Multielement Display

    PubMed Central

    2016-01-01

    Previous studies have shown that the perceptual organization of the visual scene constrains the deployment of attention. Here we investigated how the organization of multiple elements into larger configurations alters their attentional weight, depending on the “pertinence” or behavioral importance of the elements’ features. We assessed object-based effects on distinct aspects of the attentional priority map: top-down control, reflecting the tendency to encode targets rather than distracters, and the spatial distribution of attention weights across the visual scene, reflecting the tendency to report elements belonging to the same rather than different objects. In 2 experiments participants had to report the letters in briefly presented displays containing 8 letters and digits, in which pairs of characters could be connected with a line. Quantitative estimates of top-down control were obtained using Bundesen’s Theory of Visual Attention (1990). The spatial distribution of attention weights was assessed using the “paired response index” (PRI), indicating responses for within-object pairs of letters. In Experiment 1, grouping along the task-relevant dimension (targets with targets and distracters with distracters) increased top-down control and enhanced the PRI; in contrast, task-irrelevant grouping (targets with distracters) did not affect performance. In Experiment 2, we disentangled the effect of target-target and distracter-distracter grouping: Pairwise grouping of distracters enhanced top-down control whereas pairwise grouping of targets changed the PRI. We conclude that object-based perceptual representations interact with pertinence values (of the elements’ features and location) in the computation of attention weights, thereby creating a widespread pattern of attentional facilitation across the visual scene. PMID:26752732

  3. Photoperiod and temperature constraints on the relationship between the photochemical reflectance index and the light use efficiency of photosynthesis in Pinus strobus

    PubMed Central

    Fréchette, Emmanuelle; Chang, Christine Yao-Yun; Ensminger, Ingo

    2016-01-01

    The photochemical reflectance index (PRI) is a proxy for the activity of the photoprotective xanthophyll cycle and photosynthetic light use efficiency (LUE) in plants. Evergreen conifers downregulate photosynthesis in autumn in response to low temperature and shorter photoperiod, and the dynamic xanthophyll cycle-mediated non-photochemical quenching (NPQ) is replaced by sustained NPQ. We hypothesized that this shift in xanthophyll cycle-dependent energy partitioning during the autumn is the cause for variations in the PRI–LUE relationship. In order to test our hypothesis, we characterized energy partitioning and pigment composition during a simulated summer–autumn transition in a conifer and assessed the effects of temperature and photoperiod on the PRI–LUE relationship. We measured gas exchange, chlorophyll fluorescence and leaf reflectance during the photosynthetic downregulation in Pinus strobus L. seedlings exposed to low temperature/short photoperiod or elevated temperature/short photoperiod conditions. Shifts in energy partitioning during simulated autumn were observed when the pools of chlorophylls decreased and pools of photoprotective carotenoids increased. On a seasonal timescale, PRI was controlled by carotenoid pool sizes rather than xanthophyll cycle dynamics. Photochemical reflectance index variation under cold autumn conditions mainly reflected long-term pigment pool adjustments associated with sustained NPQ, which impaired the PRI–LUE relationship. Exposure to warm autumn conditions prevented the induction of sustained NPQ but still impaired the PRI–LUE relationship. We therefore conclude that alternative zeaxanthin-independent NPQ mechanisms, which remain undetected by the PRI, are present under both cold and warm autumn conditions, contributing to the discrepancy in the PRI–LUE relationship during autumn. PMID:26846980

  4. BDNF promotes connections of corticospinal neurons onto spared descending interneurons in spinal cord injured rats.

    PubMed

    Vavrek, R; Girgis, J; Tetzlaff, W; Hiebert, G W; Fouad, K

    2006-06-01

    Although regeneration of injured axons is inhibited within the adult CNS, moderate recovery can be found in patients and animals with incomplete spinal cord injury (SCI). This can be partly attributed to sprouting of spared and injured axons, rostral and caudal to the lesion, respectively. Recently, it has been reported that following a thoracic SCI such sprouting can result in indirect reconnections of the lesioned axons to caudal targets via propriospinal interneurons (PrI). Here, we attempted to further promote this spontaneous repair mechanism by applying the neurotrophic factor BDNF (brain-derived neurotrophic factor), in the vicinity of the cell bodies of lesioned corticospinal neurons or NT-3, intrathecally to the cervical spinal cord. We performed a dorsal over-hemisection at the thoracic spinal cord sparing only the left ventrolateral quadrant. This type of lesion did not promote sprouting of injured corticospinal axons or re-routing via commissural PrI. Also, in rats that received NT-3 at the cervical enlargement, no increase in sprouting was found. However, animals receiving BDNF at the cell bodies of lesioned corticospinal neurons showed a significant increase in collateral sprouting and in the number of contacts with PrI. This was not observed when BDNF was administered to unlesioned animals. Although no statistical difference in the horizontal ladder walking was found between the groups, the increase in collateral sprouting and in the number of contacts correlated with the functional recovery. Hence, cell body treatment can promote plasticity of the injured CNS and may be a valuable treatment approach in conjunction with local regeneration promoting strategies.

  5. ADAR2-mediated editing of miR-214 and miR-122 precursor and antisense RNA transcripts in liver cancers.

    PubMed

    Liu, Wan-Hsin; Chen, Chao-Hung; Yeh, Kun-Huei; Li, Chiao-Ling; Wu, Yi-Jinn; Chen, Ding-Shinn; Chen, Pei-Jer; Yeh, Shiou-Hwei

    2013-01-01

    A growing list of microRNAs (miRNAs) show aberrant expression patterns in hepatocellular carcinoma (HCC), but the regulatory mechanisms largely remain unclear. RNA editing catalyzed by members of the adenosine deaminase acting on the RNA (ADAR) family could target the miRNA precursors and affect the biogenesis process. Therefore, we investigate whether RNA editing could be one mechanism contributing to the deregulation of specific miRNAs in HCC. By overexpression of individual ADARs in hepatoma cells, RNA editing on the precursors of 16 miRNAs frequently deregulated in HCC was screened by a sensitive high-resolution melting platform. The results identified RNA precursors of miR-214 and miR-122 as potential targets edited by ADAR2. A subset of HCC showing elevated ADAR2 verified the major editings identified in ARAR2 overexpressed hepatoma cells, either with A-to-I or U-to-C changes. The unusual U-to-C editing at specific residues was demonstrated as being attributed to the A-to-I editing on the RNA transcripts complementary to the pri-miRNAs. The editing event caused a decrease of the RNA transcript complementary to pri-miR-214, which led to the decrease of pri-miR-214 and miR-214 and resulted in the increased protein level of its novel target gene Rab15. In conclusion, the current study discovered ADAR2-mediated editing of the complementary antisense transcripts as a novel mechanism for regulating the biogenesis of specific miRNAs during hepatocarcinogenesis.

  6. Recent development of two new UV Raman standoff explosive detection systems

    NASA Astrophysics Data System (ADS)

    Waterbury, Rob; Babnick, Robert; Cooper, Justin L.; Ford, Alan R.; Herrera, Francisco; Hopkins, Adam J.; Pohl, Ken; Profeta, Luisa T. M.; Sandoval, Juan; Vunck, Darius

    2016-05-01

    Alakai Defense Systems has created two new short range UV Raman standoff explosive detection sensors. These are called the Critical Infrastructure Protection System (CIPS) and Portable Raman Improvised Explosive Detection System (PRIED) and work at standoff ranges of 10cm and 1-10m respectively. Both these systems are designed to detect neartrace quantities of explosives and Homemade Explosives. A short description of the instruments, design trades, and CONOPS of each design is presented. Data includes a wide variety of explosives, precursors, TIC/TIM's, narcotics, and CWA simulants

  7. Design and Development of A Segmented Magnet Homopolar Torque Converter

    DTIC Science & Technology

    1976-02-01

    transferred pri- marily from the brush via the shunts, the rotor and the brush-to-brush holder contact. An energy balance yields the heat transferred...intercollector pressure balancing and shaft sealing. 5. ms/Division Sweep Rate. 0.5 s/Division Sweep Rate. 1.0 s/Division Sweep Rate. GEC vertical shaft...portions of the test pfan were^xecuted successfully. These tests included slow soeed rotor test to insure proper assembly and high speed machine test to

  8. Development of a ROTC/Army Career Commitment Model: Management Summary Report

    DTIC Science & Technology

    1976-03-01

    White aA M-Ior John M. Little (Eastern Kentucky University), Lt. Colonel Marion F. White (Harshall University), Colonel Billy C. DuRant and Major David 0...Army versus members of the Active Duty Reserve: A disproportion- ately larger percentage of Regular Army officers were White ; a disproportionately...P) 4 M) w .0 to M 0 r 0 5,.~ - U I C ti C 0 C’, e\\ - SaPot isjfact Pry Fiur 3.- SAIFCT - RAIG O NAM FIE I Nectral 3xelne However, because of the

  9. Duplex unwinding with DEAD-box proteins.

    PubMed

    Jankowsky, Eckhard; Putnam, Andrea

    2010-01-01

    DEAD-box proteins, which comprise the largest helicase family, are involved in virtually all aspects of RNA metabolism. DEAD-box proteins catalyze diverse ATP-driven functions including the unwinding of RNA secondary structures. In contrast to many well-studied DNA and viral RNA helicases, DEAD-box proteins do not rely on translocation on one of the nucleic acid strands for duplex unwinding, but directly load onto helical regions and then locally pry the strands apart in an ATP-dependent fashion. In this chapter, we outline substrate design and unwinding protocols for DEAD-box proteins and focus on the quantitative evaluation of their unwinding activity.

  10. Product spectrum matrix feature extraction and recognition of radar deception jamming

    NASA Astrophysics Data System (ADS)

    Tian, Xiao; Tang, Bin; Gui, Guan

    2013-12-01

    A deception jamming recognition algorithm is proposed based on product spectrum matrix (SPM). Firstly, the product spectral in the different pulse repetition interval (PRI) is calculated, and the product spectral of frequency-slow time is arranged into a two-dimensional matrix. Secondly, non-negative matrix factorisation (NMF) is used to extract the features, and further the separability of the characteristic parameters is analysed by the F-Ratio. Finally, the best features are selected to recognise the deception jamming. The experimental results show that the average recognition accuracy of the proposed deception jamming algorithm is higher than 90% when SNR is greater than 6dB.

  11. Off-Site Monitoring of Nuclear Fuel Reprocessing Plants for Nuclear Weapons Proliferation

    DTIC Science & Technology

    1980-01-01

    Conditions for a GO’ound- Lovel ,Xe-136 Concentration of 4.43E-5 grams/meter 3 tNeutral Atmospheric Stability; 1Ol Stack Dilution 22 12. ContinuousUniform...Conditions for a Center-line,Groundm- lovel , Xenon Isotopes Concentration of 4.93E-4 gramb/meter 3 ! Neutrally Stable Atmosphere Effective Stack Wind...YorksSpringer- Verlag, 1976. 42.ftanklin.R. ,Pri’vate Comaunication,AFPL,WPAFB,Ohio,1979. 43, Bernardes ,N. and Primakoft,H.,,"Molecule Formation In the Inert

  12. Ten Years Development of Metallurgical Research and Technology in Communist China

    DTIC Science & Technology

    1960-01-15

    ratio was lowe., red 15.7"(, Th, .ýx-pri3ncea on blast furnace operations since tho laco foiv~ard shows that as tha smelting intinsity is raised the air...combination with flotation, and reverse flotation. In each process , the iron concentrate made contains 60 Fe or better, recovery is more than 80", and...metallurgical practice. Therefore, a whole series of metallurgical tests must be made in large industrial scale blast furnaces. Blast furnace tests indicate

  13. Delaying an Overhaul & Ship’s Equipment.

    DTIC Science & Technology

    1980-05-01

    M . On Pelh iiitqral Solutions of AD A0. 459 PP 176 the Schrodinger Equation Without Limiting Pry Felrx. Wendi. ’Correlates of letento,n -0 Prn- cedr...steaming rates per month to estimate increases in past steaming variables, equations (1) and (2) be- come 13 AC2 = -0.0126At (3a) AC3/C4 = 0.013RAt...3b) and T 12AC2 = -0.0126 E At = -0.98 (4a) At =1 T 1.2 AC3/C4 = 0.0138 At = 1.07 (4b) At=1 Using equation (4b), we estimate that if an overhaul were

  14. National Science Resources Center Project to Improve Science Teaching in Elementary Schools with Special Emphasis on Department of Defense Dependents Schools and Other Schools Serving Children of Military Personnel

    DTIC Science & Technology

    1992-10-01

    Weather and Me (grade 1), Chemical Tests (grade 3), Sounds (grade 3), Floating and Sinking (grade 4), Food Chemistry (grade 5), Ecosystems (grade 5), and...9?7 4 Our selves Aknimial Floating and Flect ric Faldl 94i Behavior Sinking Circuits Fall 93 Fall 93 .5) Ipum W1 5 MIicroworids E-cosystemis Food St...Butterflies--grade 2 8 Experiments with Plants-grade 6 9 Magnets and Motors--grade 6 1’:N 1TS AVA I1,A. B1t.1` S PRI NG; !992 U Food Chemistry-grade 5

  15. JPRS Report China

    DTIC Science & Technology

    1988-04-25

    international cycles like the " setter " in a volleyball game and seek its own best growth in those cycles. By serving as " setter " we mean taking full...interior regions to better serve as the "ace spiker" of the export-oriented economy. Nei Monggol’s role as " setter " in the two great economic cycles is...for developing those resources. This means that we must play the role of " setter ," providing appropriate raw materials, semifinished goods and pri

  16. Animal models of ulcerative colitis and their application in drug research

    PubMed Central

    Low, Daren; Nguyen, Deanna D; Mizoguchi, Emiko

    2013-01-01

    The specific pathogenesis underlying inflammatory bowel disease is complex, and it is even more difficult to decipher the pathophysiology to explain for the similarities and differences between two of its major subtypes, Crohn’s disease and ulcerative colitis (UC). Animal models are indispensable to pry into mechanistic details that will facilitate better preclinical drug/therapy design to target specific components involved in the disease pathogenesis. This review focuses on common animal models that are particularly useful for the study of UC and its therapeutic strategy. Recent reports of the latest compounds, therapeutic strategies, and approaches tested on UC animal models are also discussed. PMID:24250223

  17. Hydrides and Borohydrides of Light Elements

    DTIC Science & Technology

    1947-12-04

    puriod of thrco minutes. vin~ a e1do arn, qddition flasks to a solution of aluminum bromide dicthylothorato in tnctra hyAroffurcen. Unfortunately the...Hydrido wdith Alicy1 Compounds of the Elomotse-- ’h(; work pri.so-nu uno tis heading rcprosots tho i~rut p~ irt R of 50sytom~tie atudy of the...4.03 nolos wrAe distillod into a reaction flask cont?,ining 6.33 uim9loa of’lithkium aliiminum hy~rido) in othcr solution, The z,,xtur.. w:a nllowad to w

  18. Ensenanza de la Astronomia a Traves de Metodos no Tradicionales

    NASA Astrophysics Data System (ADS)

    Tignanelli, H. L.

    1990-11-01

    REUMEN: Se presentan los aspects pri nc ipales de a ense? anza de la astronor:. a para -; s. En esta cc .unicaci #n, 5 ha especial mfasis em Ia descripci':"n de las caracteristicas y las posibi lidades peda gicas de los no tradicionales de aprendiZaje. E' : In the following the principal aspects of teaching of astrono ..y for children) are oresented. In this paper, special emphasis has been given to desc rib the characteristics and pedagogical possibilities of the non traditional methods of learning. : TEACHING

  19. Fighting Corruption in Mexico: Lessons from Colombia

    DTIC Science & Technology

    2011-06-01

    Desmitificando la corrupción en América Latina,‖ Nueva Sociedad , December 2004, 54–68. 31 E. CONCLUSION In 2003, just three years after the PRI was voted...as “El Bogotazo” in 1948.176 The 10-year period that followed referred to as La Violencia or The Violence was a bloody civil war that claimed...followed his murder and left the capital nearly destroyed. In addition, the following 18 years known as La Violencia were marked with armed groups

  20. MAX-DOAS measurements in southern China: 1. automated aerosol profile retrieval using oxygen dimers absorptions

    NASA Astrophysics Data System (ADS)

    Li, X.; Brauers, T.; Shao, M.; Garland, R. M.; Wagner, T.; Deutschmann, T.; Wahner, A.

    2008-09-01

    We performed MAX-DOAS measurements during the PRiDe-PRD2006 campaign in the Pearl River Delta region 50 km north of Guangzhou, China, for 4 weeks in June 2006. We used an instrument which simultaneously sampled the wavelength range from 292 nm to 443 nm at 7 different elevation angles between 3° and 90°. Here we show that the O4 (O2 dimer) absorption at 360 nm can be used to retrieve the aerosol extinction and the height of the boundary layer. A comparison with simultaneously recorded, ground based nephelometer data shows an excellent agreement.

  1. CrossTalk: The Journal of Defense Software Engineering. Volume 22, Number 5, July/August 2009

    DTIC Science & Technology

    2009-08-01

    SMXS/MXDEA 6022 Fir AVE BLDG 1238 Hill AFB, UT 84056-5820 Article Submissions: We welcome articles of interest to the defense software community ...Webb, Luke. “Knowledge Manage- ment for Through Life Support.” Doctoral Thesis (in progress) via pri- vate communication . RMIT University (Australia...Practice.” Communications of the ACM 41.12 (1998): 37-44. 13. Jarke, Matthias. “Requirements Tracing.” Communications of the ACM 41.12 (1998): 32-36. 14

  2. Navier-Stokes Solution for a NACA 0012 Airfoil with Mass Flux (Fan)

    DTIC Science & Technology

    1988-12-01

    JLLXILEPI.ILEMI, - hELP2 hEiLMSIZTEUPS 1161141GAI4S.GAK2.GAI4IGXJ4SIP. -PINF.SfNA.COSA,PRI.PAI.REI:XL .LlM I COMMONITIMEI’ DIAU (IM.J41...CALL OAJ4PEY (WE.MPE) rALLI AMPEX IME,MPE) C C - MULTIPLY RUS-VECTOR Y - DIAU C DO 1 K-1.4 D0 I .I-2.JLI DO 1 I-2.IL1 RMSIS .4 KJ--OTAUI,J)*RJSI.J,K, I

  3. How Quickly Can Attention Affect Form Perception?

    DTIC Science & Technology

    1987-11-01

    of targetA in1c’ntxi i,’jtio iretLrairilg triails giveni pri or to Th is exicr inmen t 4) run ii iei ia to lyj after Fxperim int I, uslnj t;]il same...cue would still require the retrieval of the to-be-attended location from memory . fut there is no longer jiuch reason to suspect that the time...dttention. The Journal of Neuroscience, 4, 1863-1874. Reeves, A., & Sperling, G. (in press). Attentiori rjati, it, sh1 r t term visual memory

  4. FAA Forecast Conference Proceedings (6th) Held at Washington, DC on 21 October 1980.

    DTIC Science & Technology

    1980-10-01

    specialized Oper.ratilonis miarkets, i nclur~d ing ra rt icuIa rly,, those that are to a high AN Year agro the FAA prolec -ted that 25) air r . ,rrier...JO Six Annual r 4 . ~FAA Forecast Conference -... Proceedings & u /]-/ " j, Oct8iLC Table of Contents ’.7 I L Part I: Introduction 2 Proceedings...lrowl Ii in FAA workload hig.Inaito ohsrg totti ihhghe o\\ er thle ne\\t 12 years. or)i thle o rder (it 3 piercent per pri( es and othe( r (osts. genieral

  5. Cycloaddition and cycloreversion reactions of a monomeric Ti(IV) oxo complex with terminal and internal alkynes. A reversible oxametallacyclobutene/hydroxoacetylide interconversion

    SciTech Connect

    Polse, J.L.; Andersen, R.A.; Bergman, R.G. |

    1995-05-17

    The synthesis and structure of Cp{sup *}{sub 2}Ti(O)(pry) (Cp{sup *}={eta}{sup 5}-C{sub 5}Me{sub 5}; pyr=pyridine) (1) were described recently. We report here on the [2 + 2] cycloaddition of 1 with terminal alkynes and the novel rearrangement of the resulting oxametallacyclobutenes to hydroxoacetylide complexes. In at least one case the arrangement is reversible, and we have obtained information on its mechanism. We have carried out experiments designed to investigate the mechanism of the oxametallacycle-to-hydroxoacetylide rearrangement. 17 refs., 1 fig.

  6. Further Development of a One-Dimensional Unsteady Euler Code for Wave Rotor Applications.

    DTIC Science & Technology

    1987-03-01

    precision value of N NEW**(I) Stored values of ** for the next time level PARRAY Array of pressures for plotting Pi/Pj PR The ratio of the pressure...NtBERI C NO - DOUBLE PRECISION VALUE OF N C NEI4**(I)- STORED VALUES OF M* FOR THE NEXT TIME LEVEL C PARRAY - ARRAY OF PRESSURES FOR PLOTTING C PRI... PARRAY ,DARRAY .SARRAY ,QARRAY ,XARRAY COMMONt AR*DQIIVSPN C --- ENTER THE APPROPRIATE VALUES BE LOM --- Na 101 GRAPHSa1 C C --- FOR GRAPH a 1 OR 2

  7. Genetically Engineered Mouse Model of Diffuse Intrinsic Pontine Glioma as a Preclinical Tool

    DTIC Science & Technology

    2014-11-01

    sagittal orientation. Sections were rehydrated in PBS-T (0.1% Triton-X100) and blocked in PBS-T with 10% normal goat serum . Pri- mary antibodies were...acquired from previously published data [4,9,11,48]. Human BSG and CG samples with expression data available from Necker- Sick Children [5] were...100 units/mL penicillin and 100 μg/mL streptomycin at 37°C and 5% CO2, and pas- saged a maximum of 3 times for experiments. Cells were plated in clear 6

  8. Drum lid removal tool

    DOEpatents

    Pella, Bernard M.; Smith, Philip D.

    2010-08-24

    A tool for removing the lid of a metal drum wherein the lid is clamped over the drum rim without protruding edges, the tool having an elongated handle with a blade carried by an angularly positioned holder affixed to the midsection of the handle, the blade being of selected width to slice between lid lip and the drum rim and, when the blade is so positioned, upward motion of the blade handle will cause the blade to pry the lip from the rim and allow the lid to be removed.

  9. Neptunium and plutonium complexes with a sterically encumbered triamidoamine (TREN) scaffold

    DOE PAGES

    Brown, Jessie L.; Gaunt, Andrew J.; King, David M.; ...

    2016-03-11

    Here, the syntheses and characterization of isostructural neptunium(IV) and plutonium(IV) complexes [MIV(TRENTIPS)(Cl)] [An = Np, Pu; TRENTIPS = {N(CH2CH2NSiPri3)3}3] are reported, along with the demonstration that they are likely reduced to the corresponding neptunium(III) and plutonium(III) products [MIII(TRENTIPS)]; this chemistry provides new platforms from which to target a plethora of unprecedented molecular functionalities in transuranic chemistry and the neptunium(IV) molecule is the first structurally characterized neptunium(IV)–amide complex.

  10. Linking solar induced fluorescence and the photochemical reflectance index to carbon assimilation in a cornfield

    NASA Astrophysics Data System (ADS)

    Cheng, Y.; Middleton, E.; Zhang, Q.; Corp, L.; Campbell, P. K.; Huemmrich, K. F.; Kustas, W.; Daughtry, C. S.; Dulaney, W. P.; Russ, A.

    2012-12-01

    Determining the health and vigor of vegetation using high spectral resolution remote sensing techniques is a critical component in monitoring productivity from both natural and managed ecosystems and their feedbacks to climate. This presentation summarizes a field campaign conducted in a USDA-ARS experimental cornfield site located in Beltsville, MD, USA over a five-year period. The site is equipped with an instrumented tower which makes continuous eddy covariance measurements of CO2 along with incoming PAR. Hyperspectral reflectance observations were acquired over corn canopies with a USB4000 Miniature Fiber Optic Spectrometer (Ocean Optics Inc., Dunedin, Florida, USA) at multiple times a day at various stages through the growing season. On all field days, supporting plant information and leaf level data were acquired (e.g., CO2 gas exchange) as well as biophysical field data, including leaf area index (LAI), mid-day canopy PAR transmission, soil reflectivity, and soil moisture. The canopy optical measurements enabled retrievals of the photochemical reflectance index (PRI) and solar induced fluorescence (SIF) centered at O2-A and -B bands. These two spectrally based bio-indicators have been widely utilized in studies to assess whether vegetation is performing near-optimally or exhibiting symptoms of environmental stress (e.g., drought or nutrient deficiency, non-optimal temperatures, etc.). Both SIF and PRI expressed diurnal dynamics and seasonal changes that followed environmental conditions and physiological status of the cornfield. We further investigated the correlation between these two retrievals and the flux tower based carbon assimilation observations (i.e. gross ecosystem production, GEP). We were able to successfully model the variation of GEP (r2=0.81; RMSE=0.18 mg CO2/m2/s) by utilizing both SIF and PRI. Several cross-validation algorithms were applied to the model to demonstrate the robustness and consistency of the model. Our results suggest great

  11. Sludge Dewatering in a Freezing Bed: A Pilot-Scale Study

    DTIC Science & Technology

    1991-04-01

    Basically the bed consists of an in- WedgewPri o Sand 9OtOpe ground concrete basin with a drainage system for Smp removing meltwater during thaw...year 3. The performance was measured in terms of the depth of sludge frozen, the time required for freezing and thawing. the meltwater quality and the...and from the top downward. Meltwater seemed in Figure 4, the freezing period began on I December to drain away as quickly as it formed, and cracks

  12. Computer-Aided Design for Built-In-Test (CADBIT) - Technical Issues. Volume 1

    DTIC Science & Technology

    1989-10-01

    Figure 2-4 outlines the operation of this menu item. OPERATINGSYSTEM MENU OVEPVIEW UTILITIES FUNCTION I CTFUNCTION 7 (PARA. Z2RA (PARA. Z .3) SHORT...TUTORIAL CAD MEN CADDS Or dow_ PC LOGIC CAD-BIT QS ME- NUrU CAD COMMANLO WINDOW T0i PRI / O[t T02 PR/MISR # T03 MICROIOCESSOR BITT04.: ORIVC&) .. . T05...Figure 2-32 ON-BOARD ROM BTID 50s - C21CAD MENU acl~ z - L ICA.DBET PC LOGIC CAD-BIT OS MENU CAD COMMAND WINDOW 1. OVERVIEW 2. SELECTION # 3. SHORT

  13. In situ spectral measurements improve the efficiency of light use efficiency models to estimate gross primary productivity in Mediterranean cork oak woodland

    NASA Astrophysics Data System (ADS)

    Cerasoli, S.; Silva, J. M.; Carvalhais, N.; Correia, A.; Costa e Silva, F.; Pereira, J. S.

    2013-12-01

    The Light Use Efficiency (LUE) concept is usually applied to retrieve Gross Primary Productivity (GPP) estimates in models integrating spectral indexes, namely Normalized Difference Vegetation Index (NDVI) and Photochemical Reflectance Index (PRI), considered proxies of biophysical properties of vegetation. The integration of spectral measurements into LUE models can increase the robustness of GPP estimates by optimizing particular parameters of the model. NDVI and PRI are frequently obtained by broad band sensors on remote platforms at low spatial resolution (e.g. MODIS). In highly heterogeneous ecosystems such spectral information may not be representative of the dynamic response of the ecosystem to climate variables. In Mediterranean oak woodlands different plant functional types (PFT): trees canopy, shrubs and herbaceous layer, contribute to the overall Gross Primary Productivity (GPP). In situ spectral measurements can provide useful information on each PFT and its temporal variability. The objectives of this study were: i) to analyze the temporal variability of NDVI, PRI and others spectral indices for the three PFT, their response to climate variables and their relationship with biophysical properties of vegetation; ii) to optimize a LUE model integrating selected spectral indexes in which the contribution of each PFT to the overall GPP is estimated individually; iii) to compare the performance of disaggregated GPP estimates and lumped GPP estimates, evaluated against eddy covariance measurements. Ground measurements of vegetation reflectance were performed in a cork oak woodland located in Coruche, Portugal (39°8'N, 8°19'W) where carbon and water fluxes are continuously measured by eddy covariance. Between April 2011 and June 2013 reflectance measurements of the herbaceous layer, shrubs and trees canopy were acquired with a FieldSpec3 spectroradiometer (ASD Inc.) which provided data in the range of 350-2500nm. Measurements were repeated approximately on

  14. JWST Primary Mirror Technology Development

    NASA Technical Reports Server (NTRS)

    Stahl, H. Philip

    2010-01-01

    Mirror Technology was identified as a (if not the) critical capability necessary to achieve the Level 1 science goals. A never before demonstrated space telescope capability was required: 6 to 8 meter class pri mary mirror, diffraction limited at 2 micrometers and operates at temperatures below 50K. Launch vehicle constraints placed significant architectural constraints: deployed/segmented primary mirror (4.5 meter fairing diameter) 20 kg/m2 areal density (PM 1000 kg mass) Such mirror technology had never been demonstrated - and did not exist

  15. Army Staff College Level Training Study

    DTIC Science & Technology

    1983-06-13

    training, Command and General Staff College, officer manage - ment 24L ABSTRACT (tlen ge i nerv eemy -sa a"d tdwalt by block numbeo) This report is an...Impact of Non-OPMD Managed Officers 59 Allies, Sister Service Officers and Reservists 59 Impact of Uniform Evaluation Scheme 60 Lack of Uniform Pri...applicable to all specialties Army wide. The top 30% to 40% of the OPtD managed officer corps should attend a much more rigorous Command and General

  16. An Open Source 3-D Printed Modular Micro-Drive System for Acute Neurophysiology

    PubMed Central

    Eskandar, Emad N.

    2014-01-01

    Current, commercial, electrode micro-drives that allow independent positioning of multiple electrodes are expensive. Custom designed solutions developed by individual laboratories require fabrication by experienced machinists working in well equipped machine shops and are therefore difficult to disseminate into widespread use. Here, we present an easy to assemble modular micro-drive system for acute primate neurophysiology (PriED) that utilizes rapid prototyping (3-d printing) and readily available off the shelf-parts. The use of 3-d printed parts drastically reduces the cost of the device, making it available to labs without the resources of sophisticated machine shops. The direct transfer of designs from electronic files to physical parts also gives researchers opportunities to easily modify and implement custom solutions to specific recording needs. We also demonstrate a novel model of data sharing for the scientific community: a publicly available repository of drive designs. Researchers can download the drive part designs from the repository, print, assemble and then use the drives. Importantly, users can upload their modified designs with annotations making them easily available for others to use. PMID:24736691

  17. Investigation of modification X-ray induced bystander effect in vitro.

    PubMed

    Shemetun, O V; Talan, O O

    2014-09-01

    Meta: doslidyty modyfikaciju radiacijno-indukovanogo efektu svidka, sprychynenogo rentgenivs'kym oprominennjam peryferychnoi' krovi ljudyny in vitro, shljahom zastosuvannja antyoksydantnogo vitaminnogo preparatu. Material doslidzhennja: limfocyty peryferychnoi' krovi ljudyny. Metody: modeljuvannja radiacijno-indukovanogo efektu svidka in vitro v zmishanyh kul'turah limfocytiv, oprominenyh v dozi 1 Gr, ta neoprominenyh limfocytiv krovi osib riznoi' stati, GTG-zabarvlennja metafaznyh hromosom ta i'h cytogenetychnyj analiz. Rezul'taty: pry vvedenni antyoksydantnogo preparatu v zmishanu kul'turu pered kul'tyvuvannjam chastota aberacij hromosom v klitynah-svidkah statystychno-dostovirno ne vidriznjalas' vid kontrol'noi' (r > 0,05). Vysnovky: vykorystannja antyoksydantnogo preparatu (vodorozchynni formy vitaminiv E, S i A) v koncentracii' 40 mkg/ml modyfikuje radiacijno-indukovanyj efekt svidka v neoprominenyh limfocytah peryferychnoi' krovi ljudyny pry i'h sumisnomu kul'tyvuvanni z limfocytamy, oprominenymy v dozi 1 Gr. Antyoksydant zapobigaje rozvytku vtorynnogo oksydatyvnogo stresu v neoprominenyh klitynah, niveljuje rozvytok v nyh radiacijno-indukovanogo efektu svidka ta zabezpechuje zberezhennja stabil'nosti i'h hromosomnogo aparatu.

  18. Assessing leaf photoprotective mechanisms using terrestrial LiDAR: towards mapping canopy photosynthetic performance in three dimensions.

    PubMed

    Magney, Troy S; Eusden, Spencer A; Eitel, Jan U H; Logan, Barry A; Jiang, Jingjue; Vierling, Lee A

    2014-01-01

    Terrestrial laser scanning (TLS) data allow spatially explicit (x, y, z) laser return intensities to be recorded throughout a plant canopy, which could considerably improve our understanding of how physiological processes vary in three-dimensional space. However, the utility of TLS data for the quantification of plant physiological properties remains largely unexplored. Here, we test whether the laser return intensity of green (532-nm) TLS correlates with changes in the de-epoxidation state of the xanthophyll cycle and photoprotective non-photochemical quenching (NPQ), and compare the ability of TLS to quantify these parameters with the passively measured photochemical reflectance index (PRI). We exposed leaves from five plant species to increasing light intensities to induce NPQ and de-epoxidation of violaxanthin (V) to antheraxanthin (A) and zeaxanthin (Z). At each light intensity, the green laser return intensity (GLRI), narrowband spectral reflectance, chlorophyll fluorescence emission and xanthophyll cycle pigment composition were recorded. Strong relationships between both predictor variables (GLRI, PRI) and both explanatory variables (NPQ, xanthophyll cycle de-epoxidation) were observed. GLRI holds promise to provide detailed (mm) information about plant physiological status to improve our understanding of the patterns and mechanisms driving foliar photoprotection. We discuss the potential for scaling these laboratory data to three-dimensional canopy space.

  19. Spatial and temporal variability of canopy GPP within a flux tower footprint

    NASA Astrophysics Data System (ADS)

    Garrity, S. R.; Vierling, L. A.

    2009-12-01

    Gross Primary Productivity (GPP) of plant canopies is strongly related to absorbed photosynthetically active radiation (APAR) and thus canopy structure. Short term canopy GPP responds to variable environmental conditions through alterations in the efficiency with which APAR is used to assimilate carbon and is thus also dependent on accessory pigment ratios and pool sizes. We used spatially distributed measurements of whole canopy transmitted radiation to better understand diurnal and seasonal dynamics of GPP within a flux tower footprint. Our instruments measured transmitted radiation in the Normalized Difference Vegetation Index (NDVI) and Photochemical Reflectance Index (PRI) wavelengths. These measurements served as proxies for canopy structure, short term changes in radiation use efficiency (RUE) and longer term changes in pools of photosynthetically important pigments. We found that aggregated measurements of PRI were related to total canopy RUE at both diurnal and seasonal time scales with the highest correlations occurring during periods when light-related stress was greatest. Diurnal and seasonal variability among spatially distributed measurements was in part explained by species composition and canopy structure. At the seasonal time scale we found evidence that suggested the ratios of photosynthetic pigments were related to canopy development and were important for explaining variability in the relationship between APAR and GPP across the growing season.

  20. WISC-IV and WISC-III profiles in children with ADHD.

    PubMed

    Mayes, Susan Dickerson; Calhoun, Susan L

    2006-02-01

    Wechsler Intelligence Scale for Children, 3rd and 4th editions (WISC-III n = 586 and WISC-IV n = 118), profiles were compared for children with ADHD and normal intelligence. Mean Verbal Comprehension Index (VCI) and Perceptual Organization/Perceptual Reasoning Index (POI/PRI) scores were significantly higher than Freedom From Distractibility/Working Memory Index (FDI/WMI) and Processing Speed Index (PSI), and Symbol Search was higher than Coding. FDI/WMI and PSI scores were similar on both tests, but VCI and POI/PRI were higher on the WISC-IV than on the WISC-III. Therefore, index discrepancies were greater for the WISC-IV, suggesting that the WISC-IV might be better than the WISC-III in delineating the strengths and weaknesses of children with ADHD. All children in the WISC-IV sample scored lowest on WMI or PSI, whereas only 88% of the WISC-III children scored lowest on FDI or PSI. Thus, the WISC-IV may be more helpful in diagnosing ADHD than the WISC-III.

  1. Experimental and theoretical verification of focusing in a large, periodically loaded transmission line negative refractive index metamaterial.

    PubMed

    Iyer, Ashwin; Kremer, Peter; Eleftheriades, George

    2003-04-07

    We have previously shown that a new class of Negative Refractive Index (NRI) metamaterials can be constructed by periodically loading a host transmission line medium with inductors and capacitors in a dual (high-pass) configuration. A small planar NRI lens interfaced with a Positive Refractive Index (PRI) parallel-plate waveguide recently succeeded in demonstrating focusing of cylindrical waves. In this paper, we present theoretical and experimental data describing the focusing and dispersion characteristics of a significantly improved device that exhibits minimal edge effects, a larger NRI region permitting precise extraction of dispersion data, and a PRI region consisting of a microstrip grid, over which the fields may be observed. The experimentally obtained dispersion data exhibits excellent agreement with the theory predicted by periodic analysis, and depicts an extremely broadband region from 960MHz to 2.5GHz over which the refractive index remains negative. At the frequency at which the theory predicts a relative refractive index of -1, the measured field distribution shows a focal spot with a maximum beam width under one-half of a guide wavelength. These results are compared with field distributions obtained through mathematical simulations based on the plane-wave expansion technique, and exhibit a qualitative correspondence. The success of this experiment attests to the repeatability of the original experiment and affirms the viability of the transmission line approach to the design of NRI metamaterials.

  2. Distinct E-cadherin-based complexes regulate cell behaviour through miRNA processing or Src and p120 catenin activity

    PubMed Central

    Kourtidis, Antonis; Ngok, Siu P.; Pulimeno, Pamela; Feathers, Ryan W.; Carpio, Lomeli R.; Baker, Tiffany R.; Carr, Jennifer M.; Yan, Irene K.; Borges, Sahra; Perez, Edith A.; Storz, Peter; Copland, John A.; Patel, Tushar; Thompson, E. Aubrey; Citi, Sandra; Anastasiadis, Panos Z.

    2016-01-01

    E-cadherin and p120 catenin (p120) are essential for epithelial homeostasis, but can also exert pro-tumorigenic activities. Here, we resolve this apparent paradox by identifying two spatially and functionally distinct junctional complexes in non-transformed polarized epithelial cells: one growth suppressing at the apical zonula adherens (ZA), defined by the p120 partner PLEKHA7 and a non-nuclear subset of the core microprocessor components DROSHA and DGCR8, and one growth promoting at basolateral areas of cell–cell contact containing tyrosine-phosphorylated p120 and active Src. Recruitment of DROSHA and DGCR8 to the ZA is PLEKHA7 dependent. The PLEKHA7–microprocessor complex co-precipitates with primary microRNAs (pri-miRNAs) and possesses pri-miRNA processing activity. PLEKHA7 regulates the levels of select miRNAs, in particular processing of miR-30b, to suppress expression of cell transforming markers promoted by the basolateral complex, including SNAI1, MYC and CCND1. Our work identifies a mechanism through which adhesion complexes regulate cellular behaviour and reveals their surprising association with the microprocessor. PMID:26302406

  3. Puerto Rico Strong Motion Seismic Network

    NASA Astrophysics Data System (ADS)

    Huerta-Lopez, C. I.; Martínez-Cruzado, J. A.; Martínez-Pagan, J.; Santana-Torres, E. X.; Torres-O, D. M.

    2014-12-01

    The Puerto Rico Strong Motion Seismic Network is currently in charge of the operation of: (i) free-field (ff) strong motion stations, (ii) instrumented structures (STR) (Dams, Bridges, Buildings), and (iii) the data acquisition/monitoring and analysis of earthquakes considered strong from the point of view of their intensity and magnitude. All these instruments are deployed in the Puerto Rico Island (PRI), US-, and British-Virgin Islands (BVI), and Dominican Republic (DR). The Puerto Rico Island and the Caribbean region have high potential to be affected by earthquakes that could be catastrophic for the area. The Puerto Rico Strong Motion Seismic Network (actually Puerto Rico Strong Motion Program, PRSMP) has grown since 1970's from 7 ff strong motion stations and one instrumented building with analog accelerographs to 111 ff strong motion stations and 16 instrumented buildings with digital accelerographs: PRI: 88 ff, 16 STR., DR: 13 ff, BVI: 5 ff, 2 STR collecting data via IP (internet), DU (telephone), and stand alone stations The current stage of the PRSMP seismic network, the analysis of moderate earthquakes that were recorded and/or occurred on the island, results of the intensity distribution of selected earthquakes, as well as results of dynamic parameter identification of some of the instrumented structures are here presented.

  4. Dicer-Independent Primal RNAs Trigger RNAi and Heterochromatin Formation

    PubMed Central

    Halic, Mario; Moazed, Danesh

    2010-01-01

    SUMMARY Assembly of fission yeast pericentromeric heterochromatin and generation of small interfering RNAs (siRNAs) from noncoding centromeric transcripts are mutually dependent processes. How this interdependent positive feedback loop is first triggered is a fundamental unanswered question. Here, we show that two distinct Argonaute (Ago1)-dependent pathways mediate small RNA generation. RNA-dependent RNA polymerase complex (RDRC) and Dicer act on specific noncoding RNAs to generate siRNAs by a mechanism that requires the slicer activity of Ago1 but is independent of pre-existing heterochromatin. In the absence of RDRC or Dicer, a distinct class of small RNAs, called primal small RNAs (priRNAs), associates with Ago1. priRNAs are degradation products of abundant transcripts, which bind to Ago1 and target antisense transcripts that result from bidirectional transcription of DNA repeats. Our results suggest that a transcriptome surveillance mechanism based on random association of RNA degradation products with Argonaute triggers siRNA amplification and heterochromatin assembly within DNA repeats. PMID:20178743

  5. Estimation of arsenic in agricultural soils using hyperspectral vegetation indices of rice.

    PubMed

    Shi, Tiezhu; Liu, Huizeng; Chen, Yiyun; Wang, Junjie; Wu, Guofeng

    2016-05-05

    This study systematically analyzed the performance of multivariate hyperspectral vegetation indices of rice (Oryza sativa L.) in estimating the arsenic content in agricultural soils. Field canopy reflectance spectra was obtained in the jointing-booting growth stage of rice. Newly developed and published multivariate vegetation indices were initially calculated to estimate soil arsenic content. The well-performing vegetation indices were then selected using successive projections algorithm (SPA), and the SPA selected vegetation indices were adopted to calibrate a multiple linear regression model for estimating soil arsenic content. Results showed that a three-band vegetation index (R716-R568)/(R552-R568) performed best in the newly developed vegetation indices in estimating soil arsenic content. The photochemical reflectance index (PRI) and red edge position (REP) performed well in the published vegetation indices. Moreover, the linear combination of two vegetation indices ((R716-R568)/(R552-R568) and REP) selected using SPA improved the estimation of soil arsenic content. These results indicated that the newly developed three-band vegetation index (R716-R568)/(R552-R568) might be recommended as an indicator for estimating soil arsenic content in the study area. PRI and REP could be used as universal vegetation indices for monitoring soil arsenic contamination.

  6. KETCH1 imports HYL1 to nucleus for miRNA biogenesis in Arabidopsis.

    PubMed

    Zhang, Zhonghui; Guo, Xinwei; Ge, Chunxiao; Ma, Zeyang; Jiang, Mengqiu; Li, Tianhong; Koiwa, Hisashi; Yang, Seong Wook; Zhang, Xiuren

    2017-03-27

    MicroRNA (miRNA) is processed from primary transcripts with hairpin structures (pri-miRNAs) by microprocessors in the nucleus. How cytoplasmic-borne microprocessor components are transported into the nucleus to fulfill their functions remains poorly understood. Here, we report KETCH1 (karyopherin enabling the transport of the cytoplasmic HYL1) as a partner of hyponastic leaves 1 (HYL1) protein, a core component of microprocessor in Arabidopsis and functional counterpart of DGCR8/Pasha in animals. Null mutation of ketch1 is embryonic-lethal, whereas knockdown mutation of ketch1 caused morphological defects, reminiscent of mutants in the miRNA pathway. ketch1 knockdown mutation also substantially reduced miRNA accumulation, but did not alter nuclear-cytoplasmic shuttling of miRNAs. Rather, the mutation significantly reduced nuclear portion of HYL1 protein and correspondingly compromised the pri-miRNA processing in the nucleus. We propose that KETCH1 transports HYL1 from the cytoplasm to the nucleus to constitute functional microprocessor in Arabidopsis This study provides insight into the largely unknown nuclear-cytoplasmic trafficking process of miRNA biogenesis components through eukaryotes.

  7. Salt Stress Reveals a New Role for ARGONAUTE1 in miRNA Biogenesis at the Transcriptional and Posttranscriptional Levels1[OPEN

    PubMed Central

    Niedojadlo, Katarzyna; Niedojadlo, Janusz; Walczak, Weronika; Szweykowska-Kulinska, Zofia; Jarmolowski, Artur

    2016-01-01

    Plants as sessile organisms have developed prompt response mechanisms to react to rapid environmental changes. In addition to the transcriptional regulation of gene expression, microRNAs (miRNAs) are key posttranscriptional regulators of the plant stress response. We show here that the expression levels of many miRNAs were regulated under salt stress conditions. This regulation occurred at the transcriptional and posttranscriptional levels. During salinity stress, the levels of miRNA161 and miRNA173 increased, while the expression of pri-miRNA161 and pri-miRNA173 was down-regulated. Under salt stress conditions, miRNA161 and miRNA173 were stabilized in the cytoplasm, and the expressions of MIR161 and MIR173 were negatively regulated in the nucleus. ARGONAUTE1 (AGO1) participated in both processes. We demonstrated that AGO1 cotranscriptionally controlled the expression of MIR161 and MIR173 in the nucleus. Our results suggests that AGO1 interacts with chromatin at MIR161 and MIR173 loci and causes the disassembly of the transcriptional complex, releasing short and unpolyadenylated transcripts. PMID:27385819

  8. Antiplatelet efficacy of P2Y12 inhibitors (prasugrel, ticagrelor, clopidogrel) in patients treated with mild therapeutic hypothermia after cardiac arrest due to acute myocardial infarction.

    PubMed

    Bednar, Frantisek; Kroupa, Josef; Ondrakova, Martina; Osmancik, Pavel; Kopa, Milos; Motovska, Zuzana

    2016-05-01

    Survivors after cardiac arrest (CA) due to AMI undergo PCI and then receive dual antiplatelet therapy. Mild therapeutic hypothermia (MTH) is recommended for unconscious patients after CA to improve neurological outcomes. MTH can attenuate the effectiveness of P2Y12 inhibitors by reducing gastrointestinal absorption and metabolic activation. The combined effect of these conditions on the efficacy of P2Y12 inhibitors is unknown. We compared the antiplatelet efficacies of new P2Y12 inhibitors in AMI patients after CA treated with MTH. Forty patients after CA for AMI treated with MTH and received one P2Y12 inhibitor (clopidogrel, prasugrel or ticagrelor) were enrolled in a prospective observational single-center study. Platelet inhibition was measured by VASP (PRI) on days 1, 2, and 3 after drug administration. In-hospital clinical data and 1-year survival data were obtained. The proportion of patients with ineffective platelet inhibition (PRI > 50 %, high on-treatment platelet reactivity) for clopidogrel, prasugrel, and ticagrelor was 77 vs. 19 vs. 1 % on day 1; 77 vs. 17 vs. 0 % on day 2; and 85 vs. 6 vs. 0 % on day 3 (P < 0.001). The platelet inhibition was significantly worse in clopidogrel group than in prasugrel or ticagrelor group. Prasugrel and ticagrelor are very effective for platelet inhibition in patients treated with MTH after CA due to AMI, but clopidogrel is not. Using prasugrel or ticagrelor seems to be a more suitable option in this high-risk group of acute patients.

  9. Protecting Data Privacy in Structured P2P Networks

    NASA Astrophysics Data System (ADS)

    Jawad, Mohamed; Serrano-Alvarado, Patricia; Valduriez, Patrick

    P2P systems are increasingly used for efficient, scalable data sharing. Popular applications focus on massive file sharing. However, advanced applications such as online communities (e.g., medical or research communities) need to share private or sensitive data. Currently, in P2P systems, untrusted peers can easily violate data privacy by using data for malicious purposes (e.g., fraudulence, profiling). To prevent such behavior, the well accepted Hippocratic database principle states that data owners should specify the purpose for which their data will be collected. In this paper, we apply such principles as well as reputation techniques to support purpose and trust in structured P2P systems. Hippocratic databases enforce purpose-based privacy while reputation techniques guarantee trust. We propose a P2P data privacy model which combines the Hippocratic principles and the trust notions. We also present the algorithms of PriServ, a DHT-based P2P privacy service which supports this model and prevents data privacy violation. We show, in a performance evaluation, that PriServ introduces a small overhead.

  10. Analysis of applied forces and electromyography of back and shoulders muscles when performing a simulated hand scaling task.

    PubMed

    Porter, William; Gallagher, Sean; Torma-Krajewski, Janet

    2010-05-01

    Hand scaling is a physically demanding task responsible for numerous overexertion injuries in underground mining. Scaling requires the miner to use a long pry bar to remove loose rock, reducing the likelihood of rock fall injuries. The experiments described in this article simulated "rib" scaling (scaling a mine wall) from an elevated bucket to examine force generation and electromyographic responses using two types of scaling bars (steel and fiberglass-reinforced aluminum) at five target heights ranging from floor level to 176 cm. Ten male and six female subjects were tested in separate experiments. Peak and average force applied at the scaling bar tip and normalized electromyography (EMG) of the left and right pairs of the deltoid and erectores spinae muscles were obtained. Work height significantly affected peak prying force during scaling activities with highest force capacity at the lower levels. Bar type did not affect force generation. However, use of the lighter fiberglass bar required significantly more muscle activity to achieve the same force. Results of these studies suggest that miners scale points on the rock face that are below their knees, and reposition the bucket as often as necessary to do so.

  11. A unique feeding strategy of the extinct marine mammal Kolponomos: convergence on sabretooths and sea otters.

    PubMed

    Tseng, Z Jack; Grohé, Camille; Flynn, John J

    2016-03-16

    Mammalian molluscivores feed mainly by shell-crushing or suction-feeding. The extinct marine arctoid, Kolponomos, has been interpreted as an otter-like shell-crusher based on similar dentitions. However, neither the masticatory biomechanics of the shell-crushing adaptation nor the way Kolponomos may have captured hard-shelled prey have been tested. Based on mandibular symphyseal morphology shared by Kolponomos and sabre-toothed carnivores, we hypothesize a sabretooth-like mechanism for Kolponomos prey-capture, whereby the mandible functioned as an anchor. Torque generated from jaw closure and head flexion was used to dislodge prey by prying, with prey then crushed using cheek teeth. We test this hypothesized feeding sequence using phylogenetically informed biomechanical simulations and shape analyses, and find a strongly supported, shared high mandibular stiffness in simulated prey-capture bites and mandibular shape in Kolponomos and the sabre-toothed cat Smilodon. These two distantly related taxa converged on using mandibles to anchor cranial torqueing forces when prying substrate-bound prey in the former and sabre-driving forces during prey-killing in the latter. Simulated prey-crushing bites indicate that Kolponomos and sea otters exhibit alternative structural stiffness-bite efficiency combinations in mandibular biomechanical adaptation for shell-crushing. This unique feeding system of Kolponomos exemplifies a mosaic of form-function convergence relative to other Carnivora.

  12. A unique feeding strategy of the extinct marine mammal Kolponomos: convergence on sabretooths and sea otters

    PubMed Central

    2016-01-01

    Mammalian molluscivores feed mainly by shell-crushing or suction-feeding. The extinct marine arctoid, Kolponomos, has been interpreted as an otter-like shell-crusher based on similar dentitions. However, neither the masticatory biomechanics of the shell-crushing adaptation nor the way Kolponomos may have captured hard-shelled prey have been tested. Based on mandibular symphyseal morphology shared by Kolponomos and sabre-toothed carnivores, we hypothesize a sabretooth-like mechanism for Kolponomos prey-capture, whereby the mandible functioned as an anchor. Torque generated from jaw closure and head flexion was used to dislodge prey by prying, with prey then crushed using cheek teeth. We test this hypothesized feeding sequence using phylogenetically informed biomechanical simulations and shape analyses, and find a strongly supported, shared high mandibular stiffness in simulated prey-capture bites and mandibular shape in Kolponomos and the sabre-toothed cat Smilodon. These two distantly related taxa converged on using mandibles to anchor cranial torqueing forces when prying substrate-bound prey in the former and sabre-driving forces during prey-killing in the latter. Simulated prey-crushing bites indicate that Kolponomos and sea otters exhibit alternative structural stiffness-bite efficiency combinations in mandibular biomechanical adaptation for shell-crushing. This unique feeding system of Kolponomos exemplifies a mosaic of form-function convergence relative to other Carnivora. PMID:26936242

  13. Functional Anatomy of the Human Microprocessor.

    PubMed

    Nguyen, Tuan Anh; Jo, Myung Hyun; Choi, Yeon-Gil; Park, Joha; Kwon, S Chul; Hohng, Sungchul; Kim, V Narry; Woo, Jae-Sung

    2015-06-04

    MicroRNA (miRNA) maturation is initiated by Microprocessor composed of RNase III DROSHA and its cofactor DGCR8, whose fidelity is critical for generation of functional miRNAs. To understand how Microprocessor recognizes pri-miRNAs, we here reconstitute human Microprocessor with purified recombinant proteins. We find that Microprocessor is an ∼364 kDa heterotrimeric complex of one DROSHA and two DGCR8 molecules. Together with a 23-amino acid peptide from DGCR8, DROSHA constitutes a minimal functional core. DROSHA serves as a "ruler" by measuring 11 bp from the basal ssRNA-dsRNA junction. DGCR8 interacts with the stem and apical elements through its dsRNA-binding domains and RNA-binding heme domain, respectively, allowing efficient and accurate processing. DROSHA and DGCR8, respectively, recognize the basal UG and apical UGU motifs, which ensure proper orientation of the complex. These findings clarify controversies over the action mechanism of DROSHA and allow us to build a general model for pri-miRNA processing.

  14. Autoregulatory mechanisms controlling the Microprocessor.

    PubMed

    Triboulet, Robinson; Gregory, Richard I

    2010-01-01

    The Microprocessor, comprising the ribonuclease Drosha and its essential cofactor, the double-stranded RNA-binding protein, DGCR8, is essential for the first step of the miRNA biogenesis pathway. It specifically cleaves double-stranded RNA within stem-loop structures of primary miRNA transcripts (pri-miRNAs) to generate precursor (pre-miRNA) intermediates. Pre-miRNAs are subsequently processed by Dicer to their mature 22 nt form. Thus, Microprocessor is essential for miRNA maturation, and pri-miRNA cleavage by this complex defines one end of the mature miRNA. Moreover, it is emerging that dysregulation of the Microprocessor is associated with various human diseases. It is therefore important to understand the mechanisms by which the expression of the subunits of the Microprocessor is regulated. Recent findings have uncovered a post-transcriptional mechanism that maintains the integrity of the Microprocessor. These studies revealed that the Microprocessor is involved in the processing of the messenger RNA (mRNA) that encodes DGCR8. This regulatory feedback loop, along with the reported role played by DGCR8 in the stabilization of Drosha protein, is part ofa newly identified regulatory mechanism controlling Microprocessor activity.

  15. Cross talk between spliceosome and microprocessor defines the fate of pre-mRNA.

    PubMed

    Mattioli, Chiara; Pianigiani, Giulia; Pagani, Franco

    2014-01-01

    The spliceosome and the microprocessor complex (MPC) are two important processing machineries that act on precursor (pre)-mRNA. Both cleave the pre-mRNA to generate spliced mature transcripts and microRNAs (miRNAs), respectively. While spliceosomes identify in a complex manner correct splice sites, MPCs typically target RNA hairpins (pri-miRNA hairpins). In addition, pre-mRNA transcripts can contain pri-miRNA-like hairpins that are cleaved by the MPC without generating miRNAs. Recent evidence indicates that the position of hairpins on pre-mRNA, their distance from splice sites, and the relative efficiency of cropping and splicing contribute to determine the fate of a pre-mRNA. Depending on these factors, a pre-mRNA can be preferentially used to generate a miRNA, a constitutively or even an alternative spliced transcript. For example, competition between splicing and cropping on splice-site-overlapping miRNAs (SO miRNAs) results in alternative spliced isoforms and influences miRNA biogenesis. In several cases, the outcome of a pre-mRNA transcript and its final handling as miRNA or mRNA substrate can be frequently closely connected to the functional relationships between diverse pre-mRNA processing events. These events are influenced by both gene context and physiopathological conditions.

  16. Autoregulatory mechanisms controlling the microprocessor.

    PubMed

    Triboulet, Robinson; Gregory, Richard I

    2011-01-01

    The Microprocessor, comprising the ribonuclease Drosha and its essential cofactor, the double-stranded RNA-binding protein, DGCR8, is essential for the first step of the miRNA biogenesis pathway. It specifically cleaves double-stranded RNA within stem-loop structures of primary miRNA transcripts (pri-miRNAs) to generate precursor (pre-miRNA) intermediates. Pre-miRNAs are subsequently processed by Dicer to their mature ∼22 nt form. Thus, Microprocessor is essential for miRNA maturation, and pri-miRNA cleavage by this complex defines one end of the mature miRNA. Moreover, it is emerging that dysregulation of the Microprocessor is associated with various human diseases. It is therefore important to understand the mechanisms by which the expression of the subunits of the Microprocessor is regulated. Recent findings have uncovered a post-transcriptional mechanism that maintains the integrity of the Microprocessor. These studies revealed that the Microprocessor is involved in the processing of the messenger RNA (mRNA) that encodes DGCR8. This regulatory feedback loop, along with the reported role played by DGCR8 in the stabilization of Drosha protein, is part of a newly identified regulatory mechanism controlling Microprocessor activity.

  17. Diversity of Streptococcus thermophilus in bacteriocin production; inhibitory spectrum and occurrence of thermophilin genes.

    PubMed

    Rossi, Franca; Marzotto, Marta; Cremonese, Silvia; Rizzotti, Lucia; Torriani, Sandra

    2013-08-01

    The bacteriocin-producing Streptococcus thermophilus strains that can dominate in natural dairy ecosystems, may also enhance safety in products obtained from natural cultures. In this study, we sought to identify bacteriocin production and bacteriocin genes in 75 strains of dairy and plant origin. The strains were tested for antimicrobial activity against pathogens or pathogen models, spoiling bacteria, and lactic acid bacteria associated with dairy products. All strains moderately inhibited Staphylococcus aureus P310, none inhibited Listeria innocua LMG 11387(T) or Clostridium tyrobutyricum LMG 1285(T). In addition, 14 were active against one or more indicators in addition to S. aureus P310. Inhibition of other starter bacteria was more common than the inhibition of unwanted microorganisms. The involvement of a proteinaceous compound was ascertained in all cases. Results suggested that the selection of bacteriocinogenic S. thermophilus strains for use in biopreservation must take into account the effects exerted on other lactic acid bacteria. PCR detection of thermophilin genes proved unreliable in predicting antimicrobial activity. For S. thermophilus PRI36 and PRI45, with relevant inhibitory features, the identity of the bacteriocin genes present in the thermophilin 9 cluster was defined, thus revealing novel variants for this genome region.

  18. Problems following hippocampal irradiation in interventional radiologists - doses and potential effects: a Monte Carlo simulation.

    PubMed

    Chumak, V; Morgun, A; Bakhanova, E; Loganovsky, K; Loganovska, T; Marazziti, D

    2015-12-01

    Metoiu doslidzhennia bulo vyvchyty zakonomirnosti formuvannia doz na gipokamp v umovakh roboty likaria inter ventsiynogo kardiologa u rentgen operatsiyniy metodom Monte Karlo, a takozh vstanovyty Ikhniy zv’iazok z efek tyvnoiu dozoiu (shcho vykorystovuiet'sia u radiatsiynomu zakhysti) ta pokazanniamy indyvidual'nykh dozymetriv, shchob otsinyty ymovirnist' dosiagnennia protiagom kar’iery rivnia dozy, pry iakomu mozhut' sposterigatysia taki radiatsiyni efekty, iak kognityvni porushennia ta inshi nervovo psykhichni rozlady.Materialy i metody: modeliuvannia metodom Monte Karlo doz oprominennia gipokampiv likaria za dopomogoiu gibrydnogo voksel'no matematychnogo fantoma dlia typovykh angiografichnykh proektsiy ta energetychnykh spektriv, vlastyvykh dlia protsedur interventsiynoI kardiologiI.Rezul'taty: pokazano, shcho oprominennia golovy ie syl'no neodnoridnym i zalezhyt' vid rentgenografichnoI pro ektsiI: vidminnist' doz oprominennia livogo ta pravogo gipokampa mozhe stanovyty do dvokh z polovynoiu raziv, za pevnykh umov doza u livomu gipokampi mozhe vdvichi perevyshchuvaty efektyvnu dozu, iaku otsiniuvaly za poshyrenym algorytmom podviynoI dozymetriI.Vysnovky: dozy na gipokamp protiagom stazhu profesiynogo oprominennia mozhut' siagaty velychyn, pry iakykh mo zhut' z’iavytysia kognityvni ta emotsiyno povedinkovi porushennia, tomu glyboke vyvchennia efektiv oprominennia mozku pratsivnykiv interventsiynoI radiologiI ie vkray neobkhidnym.

  19. Relation of Chlorophyll Fluorescence Sensitive Reflectance Ratios to Carbon Flux Measurements of Montanne Grassland and Norway Spruce Forest Ecosystems in the Temperate Zone

    PubMed Central

    Ač, Alexander; Malenovský, Zbyněk; Urban, Otmar; Hanuš, Jan; Zitová, Martina; Navrátil, Martin; Vráblová, Martina; Olejníčková, Julie; Špunda, Vladimír; Marek, Michal

    2012-01-01

    We explored ability of reflectance vegetation indexes (VIs) related to chlorophyll fluorescence emission (R686/R630, R740/R800) and de-epoxidation state of xanthophyll cycle pigments (PRI, calculated as (R531 − R570)/(R531 − R570)) to track changes in the CO2 assimilation rate and Light Use Efficiency (LUE) in montane grassland and Norway spruce forest ecosystems, both at leaf and also canopy level. VIs were measured at two research plots using a ground-based high spatial/spectral resolution imaging spectroscopy technique. No significant relationship between VIs and leaf light-saturated CO2 assimilation (AMAX) was detected in instantaneous measurements of grassland under steady-state irradiance conditions. Once the temporal dimension and daily irradiance variation were included into the experimental setup, statistically significant changes in VIs related to tested physiological parameters were revealed. ΔPRI and Δ(R686/R630) of grassland plant leaves under dark-to-full sunlight transition in the scale of minutes were significantly related to AMAX (R2 = 0.51). In the daily course, the variation of VIs measured in one-hour intervals correlated well with the variation of Gross Primary Production (GPP), Net Ecosystem Exchange (NEE), and LUE estimated via the eddy-covariance flux tower. Statistical results were weaker in the case of the grassland ecosystem, with the strongest statistical relation of the index R686/R630 with NEE and GPP. PMID:22701368

  20. Isolation of Elusive HAsAsH in a Crystalline Diuranium(IV) Complex

    PubMed Central

    Gardner, Benedict M.; Balázs, Gábor; Wooles, Ashley J.; Tuna, Floriana; McInnes, Eric J. L.; McMaster, Jonathan; Lewis, William; Blake, Alexander J.

    2015-01-01

    Abstract The HAsAsH molecule has hitherto only been proposed tentatively as a short‐lived species generated in electrochemical or microwave‐plasma experiments. After two centuries of inconclusive or disproven claims of HAsAsH formation in the condensed phase, we report the isolation and structural authentication of HAsAsH in the diuranium(IV) complex [{U(TrenTIPS)}2(μ‐η2:η2‐As2H2)] (3, TrenTIPS=N(CH2CH2NSiPri 3)3; Pri=CH(CH3)2). Complex 3 was prepared by deprotonation and oxidative homocoupling of an arsenide precursor. Characterization and computational data are consistent with back‐bonding‐type interactions from uranium to the HAsAsH π*‐orbital. This experimentally confirms the theoretically predicted excellent π‐acceptor character of HAsAsH, and is tantamount to full reduction to the diarsane‐1,2‐diide form. PMID:27478272

  1. Dehydroepiandrosterone-induces miR-21 transcription in HepG2 cells through estrogen receptor β and androgen receptor

    PubMed Central

    Teng, Yun; Litchfield, Lacey M.; Ivanova, Margarita M.; Prough, Russell A.; Clark, Barbara J.; Klinge, Carolyn M.

    2014-01-01

    Although oncomiR miR-21 is highly expressed in liver and overexpressed in hepatocellular carcinoma (HCC), its regulation is uncharacterized. We examined the effect of physiologically relevant nanomolar concentrations of dehydroepiandrosterone (DHEA) and DHEA sulfate (DHEA-S) on miR-21 expression in HepG2 human hepatoma cells. 10 nM DHEA and DHEA-S increase pri-miR-21 transcription in HepG2 cells. Dietary DHEA increased miR-21 in vivo in mouse liver. siRNA and inhibitor studies suggest that DHEA-S requires desulfation for activity and that DHEA-induced pri-miR-21 transcription involves metabolism to androgen and estrogen receptor (AR and ER) ligands. Activation of ERβ and AR by DHEA metabolites androst-5-ene-3,17-dione (ADIONE), androst-5-ene-3β,17β-diol (ADIOL), dihydrotestosterone (DHT), and 5α-androstane-3β,17β-diol (3β-Adiol) increased miR-21 transcription. DHEA-induced miR-21 increased cell proliferation and decreased Pdcd4 protein, a bona fide miR-21. Estradiol (E2) inhibited miR-21 expression via ERα. DHEA increased ERβ and AR recruitment to the miR-21 promoter within the VMP1/TMEM49 gene, with possible significance in hepatocellular carcinoma. PMID:24845419

  2. Structure of the dimerization domain of DiGeorge critical region 8

    SciTech Connect

    Senturia, R.; Faller, M.; Yin, S.; Loo, J.A.; Cascio, D.; Sawaya, M.R.; Hwang, D.; Clubb, R.T.; Guo, F.

    2010-09-27

    Maturation of microRNAs (miRNAs, {approx}22nt) from long primary transcripts [primary miRNAs (pri-miRNAs)] is regulated during development and is altered in diseases such as cancer. The first processing step is a cleavage mediated by the Microprocessor complex containing the Drosha nuclease and the RNA-binding protein DiGeorge critical region 8 (DGCR8). We previously reported that dimeric DGCR8 binds heme and that the heme-bound DGCR8 is more active than the heme-free form. Here, we identified a conserved dimerization domain in DGCR8. Our crystal structure of this domain (residues 298-352) at 1.7 {angstrom} resolution demonstrates a previously unknown use of a WW motif as a platform for extensive dimerization interactions. The dimerization domain of DGCR8 is embedded in an independently folded heme-binding domain and directly contributes to association with heme. Heme-binding-deficient DGCR8 mutants have reduced pri-miRNA processing activity in vitro. Our study provides structural and biochemical bases for understanding how dimerization and heme binding of DGCR8 may contribute to regulation of miRNA biogenesis.

  3. An Improved Comprehensive Model for the Apparent Viscosity of Blood

    NASA Astrophysics Data System (ADS)

    Jacobitz, Frank; Anderson, Spencer

    2008-11-01

    An improved comprehensive model for the apparent viscosity of blood is developed and used in simulations of the microcirculation in capillary bundles of rat spinotrapezius muscle fascia. In the microcirculation, the apparent viscosity of blood depends on the local vessel diameter, hematocrit, and shear rate. The proposed comprehensive model extends the apparent viscosity model developed by Pries, Secomb, Gaehtgens, and Gross (Circulation Research, 67, 826-834, 1990), which describes the effect of vessel diameter and hematocrit on the apparent viscosity. A shear thinning term is developed using the experimental data of Lipowsky, Usami, and Chien (Microvascular Research, 19, 297-319, 1980). Curve fits of this data can be combined with equations given in the Pries et al. work to create a system of equations that can be used to find the shear thinning factor. The simulations based on the improved apparent viscosity model use realistic vessel topology for the microvasculature, reconstructed from microscope images of tissue samples, and consider passive and active vessel properties. The numerical method is based on a Hagen-Poiseuille balance in the microvessels and a sparse matrix solver is used to obtain the solution. It was found that the inclusion of the shear factor decreases the overall flowrate in the capillary bundle. Many vessel connections in the fascia are characterized by relatively low shear rates and therefore increased apparent viscosity.

  4. Relating a Spectral Index from MODIS and Tower-based Measurements to Ecosystem Light Use Efficiency for a Fluxnet-Canada Coniferous Forest

    NASA Technical Reports Server (NTRS)

    Middleton, Elizabeth M.; Cheng, Yen-Ben; Hilker, Thomas; Huemmrich, Karl F.; Black, T. Andrew; Krishnan, Praveena; Coops, Nicholas C.

    2008-01-01

    As part of the North American Carbon Program effort to quantify the terrestrial carbon budget of North America, we have been examining the possibility of retrieving ecosystem light use efficiency (LUE, the carbon sequestered per unit photosynthetically active radiation) directly from satellite observations. Our novel approach has been to compare LUE derived from tower fluxes with LUE estimated using spectral indices computed from MODIS satellite observations over forests in the Fluxnet-Canada Research Network, using the MODIS narrow ocean bands acquired over land. We matched carbon flux data collected around the time of the MODIS mid-day overpass for over one hundred relatively clear days in five years (2001-2006) from a mature Douglas fir forest in British Columbia. We also examined hyperspectral reflectance data collected diurnally from the tower in conjunction with the eddy correlation fluxes and meteorological measurements made throughout the 2006 growing season at this site. The tower-based flux data provided an opportunity to examine diurnal and seasonal LUE processes and their relationship to spectral indices at the scale of the forest stand. We evaluated LUE in conjunction with the Photochemical Reflectance Index (PRI), a normalized difference spectral index that uses 531 nm and a reference band to capture responses to high light induced stress afforded by the xanthophyll cycle. Canopy structure information, retrieved from airborne laser scanning radar (LiDAR) observations, was used to partition the forest canopy into sunlit and shaded fractions throughout the day, on numerous days during 2006. At each observation period throughout a day, the PRI was examined for the sunlit, shaded, and intermediate canopy segments defined by their instantaneous position relative to the solar principal plane (SPP). The sunlit sector was associated with the illumination "hotspot" (the reflectance backscatter maximum), the shaded sector with the "cold or dark spot" (the

  5. Structure of the dimerization domain of DiGeorge critical region 8.

    PubMed

    Senturia, Rachel; Faller, Michael; Yin, Sheng; Loo, Joseph A; Cascio, Duilio; Sawaya, Michael R; Hwang, Daniel; Clubb, Robert T; Guo, Feng

    2010-07-01

    Maturation of microRNAs (miRNAs, approximately 22nt) from long primary transcripts [primary miRNAs (pri-miRNAs)] is regulated during development and is altered in diseases such as cancer. The first processing step is a cleavage mediated by the Microprocessor complex containing the Drosha nuclease and the RNA-binding protein DiGeorge critical region 8 (DGCR8). We previously reported that dimeric DGCR8 binds heme and that the heme-bound DGCR8 is more active than the heme-free form. Here, we identified a conserved dimerization domain in DGCR8. Our crystal structure of this domain (residues 298-352) at 1.7 A resolution demonstrates a previously unknown use of a WW motif as a platform for extensive dimerization interactions. The dimerization domain of DGCR8 is embedded in an independently folded heme-binding domain and directly contributes to association with heme. Heme-binding-deficient DGCR8 mutants have reduced pri-miRNA processing activity in vitro. Our study provides structural and biochemical bases for understanding how dimerization and heme binding of DGCR8 may contribute to regulation of miRNA biogenesis.

  6. Caspases cleave and inhibit the microRNA processing protein DiGeorge Critical Region 8.

    PubMed

    Gong, Ming; Chen, Yanqiu; Senturia, Rachel; Ulgherait, Matthew; Faller, Michael; Guo, Feng

    2012-06-01

    DGCR8 (DiGeorge Critical Region 8) is an essential microRNA (miRNA) processing protein that recognizes primary transcripts of miRNAs (pri-miRNAs) and triggers their cleavage by the Drosha nuclease. We previously found that Fe(III) heme binds and activates DGCR8. Here we report that in HeLa cells, DGCR8 undergoes two proteolytic events that produce two C-terminal fragments called DGCR8(C1) and DGCR8(C2) , respectively. DGCR8(C2) accumulates during apoptosis and is generated through cleavage by a caspase. The caspase cleavage site is located in the central loop of the heme-binding domain. Cleavage of DGCR8 by caspase-3 in vitro results in loss of the otherwise tightly bound Fe(III) heme cofactor, dissociation of the N- and C-terminal proteolytic fragments, and inhibition of the pri-miRNA processing activity. These results reveal an intrinsic mechanism in the DGCR8 protein that seems to have evolved for regulating miRNA processing via association with Fe(III) heme and proteolytic cleavage by caspases. Decreased expression of miRNAs has been observed in apoptotic cells, and this change was attributed to caspase-mediated cleavage of a down-stream miRNA processing nuclease Dicer. We suggest that both the Drosha and Dicer cleavage steps of the miRNA maturation pathway may be inhibited in apoptosis and other biological processes where caspases are activated.

  7. Field Theory for Multi-Particle System

    NASA Astrophysics Data System (ADS)

    Wang, Shouhong; Ma, Tian

    2016-03-01

    The main objectives of this talk are 1) to introduce some basic postulates for quantum multi-particle systems, and 2) to develop a universal field theory for interacting multi-particle systems coupling both particle fields and interacting fields. By carefully examining the nature of interactions between multi-particles, we conclude that multi-particle systems must obey i) the gauge symmetry, ii) the principle of interaction dynamics (PID), and iii) the principle of representation invariance (PRI). Intuitively, PID takes the variation of the action functional under energy-momentum conservation constraint, offers a different and natural way of introducing Higgs fields, and is also required by the presence of dark matter and dark energy and the quark confinement. PRI requires that the SU(N) gauge theory be independent of representations of SU(N). Based on these principles, a few basic postulates for multi-particle systems are introduced in this talk, leading to a field theory for interacting multi-particle systems. A direct consequence of the field theory is the derivation of general atomic spectrum equations. Supported in Part by the Office of Naval Research, by the US National Science Foundation, and by the Chinese National Science Foundation.

  8. Quantitative EEG for Predicting Upper-limb Motor Recovery in Chronic Stroke Robot-assisted Rehabilitation.

    PubMed

    Trujillo, Paula; Mastropietro, Alfonso; Scano, Alessandro; Chiavenna, Andrea; Mrakic-Sposta, Simona; Caimmi, Marco; Molteni, Franco; Rizzo, Giovanna

    2017-03-03

    Stroke is a leading cause for adult disability, which in many cases causes motor deficits. Despite the developments in motor rehabilitation techniques, recovery of upper limb functions after stroke is limited and heterogeneous in terms of outcomes, and knowledge of important factors that may affect the outcome of the therapy is necessary to make a reasonable prediction for individual patients. In this study, we assessed the relationship between quantitative electroencephalographic (QEEG) measures and the motor outcome in chronic stroke patients that underwent a robot-assisted rehabilitation program to evaluate the utility of QEEG indices to predict motor recovery. For this purpose, we acquired resting-state electroencephalographic signals from which the Power Ratio Index (PRI), Delta/Alpha Ratio (DAR), and Brain Symmetry Index (BSI) were calculated. The outcome of the motor rehabilitation was evaluated using upper-limb section of the Fugl-Meyer Assessment. We found that PRI was significantly correlated with the motor recovery, suggesting that this index may provide useful information to predict the rehabilitation outcome.

  9. Microbial Small Talk: Volatiles in Fungal–Bacterial Interactions

    PubMed Central

    Schmidt, Ruth; Etalo, Desalegn W.; de Jager, Victor; Gerards, Saskia; Zweers, Hans; de Boer, Wietse; Garbeva, Paolina

    2016-01-01

    There is increasing evidence that volatile organic compounds (VOCs) play an important role in the interactions between fungi and bacteria, two major groups of soil inhabiting microorganisms. Yet, most of the research has been focused on effects of bacterial volatiles on suppression of plant pathogenic fungi whereas little is known about the responses of bacteria to fungal volatiles. In the current study we performed a metabolomics analysis of volatiles emitted by several fungal and oomycetal soil strains under different nutrient conditions and growth stages. The metabolomics analysis of the tested fungal and oomycetal strains revealed different volatile profiles dependent on the age of the strains and nutrient conditions. Furthermore, we screened the phenotypic responses of soil bacterial strains to volatiles emitted by fungi. Two bacteria, Collimonas pratensis Ter291 and Serratia plymuthica PRI-2C, showed significant changes in their motility, in particular to volatiles emitted by Fusarium culmorum. This fungus produced a unique volatile blend, including several terpenes. Four of these terpenes were selected for further tests to investigate if they influence bacterial motility. Indeed, these terpenes induced or reduced swimming and swarming motility of S. plymuthica PRI-2C and swarming motility of C. pratensis Ter291, partly in a concentration-dependent manner. Overall the results of this work revealed that bacteria are able to sense and respond to fungal volatiles giving further evidence to the suggested importance of volatiles as signaling molecules in fungal–bacterial interactions. PMID:26779150

  10. Response of human macrophages to wound matrices in vitro.

    PubMed

    Witherel, Claire E; Graney, Pamela L; Freytes, Donald O; Weingarten, Michael S; Spiller, Kara L

    2016-05-01

    Chronic wounds remain a major burden to the global healthcare system. Myriad wound matrices are commercially available but their mechanisms of action are poorly understood. Recent studies have shown that macrophages are highly influenced by their microenvironment, but it is not known how different biomaterials affect this interaction. Here, it was hypothesized that human macrophages respond differently to changes in biomaterial properties in vitro with respect to phenotype, including pro-inflammatory M1, anti-inflammatory M2a, known for facilitating extracellular matrix deposition and proliferation, and M2c, which has recently been associated with tissue remodeling. Using multiple donors, it was found that collagen scaffolds cross-linked with 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide and N-hydroxysuccinimide (EDC/NHS) promoted the least inflammatory phenotype in primary human macrophages compared with scaffolds cross-linked with formaldehyde or glutaraldehyde. Importantly, gene expression analysis trends were largely conserved between donors, especially TNFa (M1), CCL22 (M2a), and MRC1 (M2a). Then the response of primary and THP1 monocyte-derived macrophages to four commercially available wound matrices were compared-Integra Dermal Regeneration Template (Integra), PriMatrix Dermal Repair Scaffold (PriMatrix), AlloMend Acellular Dermal Matrix (AlloMend), and Oasis Wound Matrix (Oasis). Gene expression trends were different between primary and THP1 monocyte-derived macrophages for all six genes analyzed in this study. Finally, the behavior of primary macrophages cultured onto the wound matrices over time was analyzed. Integra and Oasis caused down-regulation of M2a markers CCL22 and TIMP3. PriMatrix caused up-regulation of TNFa (M1) and CD163 (M2c) and down-regulation of CCL22 and TIMP3 (both M2a). AlloMend caused up-regulation in CD163 (M2c). Lastly, Oasis promoted the largest increase in the combinatorial M1/M2 score, defined as the sum of M1 genes divided by

  11. Estimation of sunlit/shaded light-use efficiency of cropland using tower-based multi-angle remote sensing data and eddy covariance flux measurements

    NASA Astrophysics Data System (ADS)

    Fu, D.; Chen, B.; Zhang, L.

    2014-12-01

    The light-use efficiency (LUE, ɛ) is one of critical parameters in the terrestrial ecosystem production studies. However, it is still a challenge how to up-scale LUE from canopy to the landscape/regional scales. One potential solution is to use automated multi-angle tower-based remote sensing platforms, which observe canopy reflectance with high spatial, temporal, spectral and angle resolution. Although some published paper on the LUE in boreal and temperate forests had used continuous multi-angle measurements of the surface reflectance, lack of study in literature investigated the vegetation physiological parameters of cropland using the surface reflectance with high spatio-temporal and high spectral data with multiple angles. To improve our understanding of physiological status of cropland, the maize within the footprint of the Daman Superstation flux tower site of Heihe Watershed Allied Telemetry Experiment Research (HiWATER) was employed in this study. Based on the observed reflectance and flux data, a Bidirectional Reflectance Distribution Function (BRDF) of vegetation index (Photochemical Reflectance Index, PRI and Vegetation Index using the Universal Pattern Decomposition method, VIUPD) at continuous time series was established by integrating of a semi-empirical kernel-driven BRDF model (RossThick-LiSparse), a footprint model (the Simple Analytical Footprint model on Eulerian coordinates for scalar Flux, SAFE-f) and a LUE model. Besides, based on the sky-condition (direct/diffused radiation) data, the relationships between the vegetation index (PRI and VIUPD) and sunlit/shaded LUE under corresponding sky conditions were established. Taking maize field as an example, the measurements were obtained during June to August, 2012. The relationships between PRI and ɛ for sunlit and shaded leaves were: PRIsu=0.06339×log(ɛsu) + 0.04882,PRIsh= 0.02675×log(ɛsh) + 0.01619, where, the subscript su, sh represent sunlit and shaded leaves respectively; p< 0.0001, R2

  12. Estimation of sunlit/shaded light-use efficiency of cropland using tower-based multi-angle remote sensing data and eddy covariance flux measurements

    NASA Astrophysics Data System (ADS)

    Fu, Dongjie; Chen, Baozhang; Zhang, Lifu

    2015-04-01

    The light-use efficiency (LUE) is one of critical parameters in the terrestrial ecosystem production studies. However, it is still a challenge how to up-scale LUE from canopy to the landscape/regional scales. One potential solution is to use automated multi-angle tower-based remote sensing platforms, which observe canopy reflectance with high spatial, temporal, spectral and angle resolution. Although some published paper on the LUE in boreal and temperate forests had used continuous multi-angle measurements of the surface reflectance, lack of study in literature investigated the vegetation physiological parameters of cropland using the surface reflectance with high spatio-temporal and high spectral data with multiple angles. To improve our understanding of physiological status of cropland, the maize within the footprint of the Daman Superstation flux tower site of Heihe Watershed Allied Telemetry Experiment Research (HiWATER) was employed in this study. Based on the observed reflectance and flux data, a Bidirectional Reflectance Distribution Function (BRDF) of vegetation index (Photochemical Reflectance Index, PRI and Vegetation Index using the Universal Pattern Decomposition method, VIUPD) at continuous time series was established by integrating of a semi-empirical kernel-driven BRDF model (RossThick-LiSparse), a footprint model (the Simple Analytical Footprint model on Eulerian coordinates for scalar Flux, SAFE-f) and a LUE model. Besides, based on the sky-condition (direct/diffused radiation) data, the relationships between the vegetation index (PRI and VIUPD) and sunlit/shaded LUE under corresponding sky conditions were established. Taking maize field as an example, the measurements were obtained during June to August, 2012. The relationships between PRI and LUE for sunlit and shaded leaves were: PRIsu=0.06339×log(LUEsu) + 0.04882, PRIsh= 0.02675×log(LUEsh) + 0.01619, where, the subscript su, sh represent sunlit and shaded leaves respectively; p< 0.0001, R2

  13. Sun-induced chlorophyll fluorescence and photochemical reflectance index improve remote-sensing gross primary production estimates under varying nutrient availability in a typical Mediterranean savanna ecosystem

    NASA Astrophysics Data System (ADS)

    Perez-Priego, O.; Guan, J.; Rossini, M.; Fava, F.; Wutzler, T.; Moreno, G.; Carvalhais, N.; Carrara, A.; Kolle, O.; Julitta, T.; Schrumpf, M.; Reichstein, M.; Migliavacca, M.

    2015-11-01

    This study investigates the performances of different optical indices to estimate gross primary production (GPP) of herbaceous stratum in a Mediterranean savanna with different nitrogen (N) and phosphorous (P) availability. Sun-induced chlorophyll fluorescence yield computed at 760 nm (Fy760), scaled photochemical reflectance index (sPRI), MERIS terrestrial-chlorophyll index (MTCI) and normalized difference vegetation index (NDVI) were computed from near-surface field spectroscopy measurements collected using high spectral resolution spectrometers covering the visible near-infrared regions. GPP was measured using canopy chambers on the same locations sampled by the spectrometers. We tested whether light-use efficiency (LUE) models driven by remote-sensing quantities (RSMs) can better track changes in GPP caused by nutrient supplies compared to those driven exclusively by meteorological data (MM). Particularly, we compared the performances of different RSM formulations - relying on the use of Fy760 or sPRI as a proxy for LUE and NDVI or MTCI as a fraction of absorbed photosynthetically active radiation (fAPAR) - with those of classical MM. Results showed higher GPP in the N-fertilized experimental plots during the growing period. These differences in GPP disappeared in the drying period when senescence effects masked out potential differences due to plant N content. Consequently, although MTCI was closely related to the mean of plant N content across treatments (r2 = 0.86, p < 0.01), it was poorly related to GPP (r2 = 0.45, p < 0.05). On the contrary sPRI and Fy760 correlated well with GPP during the whole measurement period. Results revealed that the relationship between GPP and Fy760 is not unique across treatments, but it is affected by N availability. Results from a cross-validation analysis showed that MM (AICcv = 127, MEcv = 0.879) outperformed RSM (AICcv =140, MEcv = 0.8737) when soil moisture was used to constrain the seasonal dynamic of LUE. However

  14. The QKI-5 and QKI-6 RNA binding proteins regulate the expression of microRNA 7 in glial cells.

    PubMed

    Wang, Yunling; Vogel, Gillian; Yu, Zhenbao; Richard, Stéphane

    2013-03-01

    The quaking (qkI) gene encodes 3 major alternatively spliced isoforms that contain unique sequences at their C termini dictating their cellular localization. QKI-5 is predominantly nuclear, whereas QKI-6 is distributed throughout the cell and QKI-7 is cytoplasmic. The QKI isoforms are sequence-specific RNA binding proteins expressed mainly in glial cells modulating RNA splicing, export, and stability. Herein, we identify a new role for the QKI proteins in the regulation of microRNA (miRNA) processing. We observed that small interfering RNA (siRNA)-mediated QKI depletion of U343 glioblastoma cells leads to a robust increase in miR-7 expression. The processing from primary to mature miR-7 was inhibited in the presence QKI-5 and QKI-6 but not QKI-7, suggesting that the nuclear localization plays an important role in the regulation of miR-7 expression. The primary miR-7-1 was bound by the QKI isoforms in a QKI response element (QRE)-specific manner. We observed that the pri-miR-7-1 RNA was tightly bound to Drosha in the presence of the QKI isoforms, and this association was not observed in siRNA-mediated QKI or Drosha-depleted U343 glioblastoma cells. Moreover, the presence of the QKI isoforms led to an increase presence of pri-miR-7 in nuclear foci, suggesting that pri-miR-7-1 is retained in the nucleus by the QKI isoforms. miR-7 is known to target the epidermal growth factor (EGF) receptor (EGFR) 3' untranslated region (3'-UTR), and indeed, QKI-deficient U343 cells had reduced EGFR expression and decreased ERK activation in response to EGF. Elevated levels of miR-7 are associated with cell cycle arrest, and it was observed that QKI-deficient U343 that harbor elevated levels of miR-7 exhibited defects in cell proliferation that were partially rescued by the addition of a miR-7 inhibitor. These findings suggest that the QKI isoforms regulate glial cell function and proliferation by regulating the processing of certain miRNAs.

  15. The need for an improved risk index for phosphorus losses to water from tile-drained agricultural land

    NASA Astrophysics Data System (ADS)

    Ulén, Barbro; Djodjic, Faruk; Etana, Araso; Johansson, Göran; Lindström, Jan

    2011-03-01

    SummaryA refined version of a conditional phosphorus risk index (PRI) for P losses to waters was developed based on monitoring and analyses of PRI factors from an agricultural catchment in Sweden. The catchment has a hummocky landscape of heavy glacial till overlying moraine and an overall balanced soil P level. Single P source factors and combinations of factors were tested and discussed together with water movement and water management factors important for catchments dominated by drained clay soils. An empirical relationship was established (Pearson correlation coefficient 0.861, p < 0.001) between phosphorus sorption index (PSI-CaCl 2), measured in a weak calcium chloride solution, and iron (Fe-AL) aluminium (Al-AL) and phosphorus (P-AL) in soil extract with acid ammonium lactate. Differing relationships were found for a field that had not received any manure in the last 15 years and a field that had received chicken litter very recently. In addition, a general relationship (Pearson correlation coefficient 0.839, p < 0.001) was found between the ratio of phosphorus extracted from fresh soil in water (Pw) to PSI-CaCl 2 and the degree of phosphorus saturation in lactate extract (DPS-AL). One exception was a single field, representing 7% of agricultural land in the catchment, that had been treated with glyphosate shortly before soil sampling. Saturated hydraulic conductivity (SHC) in heavy clay in contact with the moraine base (at 1 m depth) was on average 0.06 m day -1. In clay not in contact with moraine, SHC was significantly lower (mean 0.007 m day -1). A reduction in the present tile drain spacing (from 14-16 m to 11 m) is theoretically required to maintain satisfactory water discharge and groundwater level. Up to 10% of the arable land was estimated to be a potential source area for P, based on different indices. Parts of a few fields close to farm buildings (1% of total arable land) were identified as essential P source areas, with high DPS-AL values and

  16. A monomeric thallium(I) amide in the solid state: synthesis and structure of TlN(Me)ArMes2 (ArMes2 = C6H3-2,6-Mes2).

    PubMed

    Wright, Robert J; Brynda, Marcin; Power, Philip P

    2005-05-16

    Reaction of TlCl and [LiN(Me)Ar(Mes)2](2) [Ar(Mes)2 = C(6)H(3)-2,6-(C(6)H(2)-2,4,6-Me(3))(2)] in Et(2)O generated the thallium amide, TlN(Me)Ar(Mes)2 (1). X-ray data showed that it has a monomeric structure with an average Tl-N distance of 2.364(3) Angstroms. There was also a Tl-arene approach [Tl-centroid = 3.026(2) Angstroms (avg)] to a flanking mesityl ring from the terphenyl substituent. DFT calculations showed that this interaction is weak and supported essentially one coordination for thallium. The electronic spectrum of 1 is hypsochromically shifted in comparison to the monomeric TlAr(Trip)2 (Trip = C(6)H(2)-2,4,6-Pr(i)(3)).

  17. Synthesis and characterization of indium xanthates and their use for the preparation of beta-In2S3 nanoparticles.

    PubMed

    Dutta, Dimple P; Sharma, Garima; Ghoshal, Shamik; Kushwah, Nisha P; Jain, Vimal K

    2006-01-01

    Synthesis and characterization of various classical indium xanthate complexes of the type [InCl(3-n)(S2COR)n] (n = 1, 2, or 3; R = Me, Et, Pr(i), and Bu(s)) have been discussed. Crystalline beta-ln2S3 nanoparticles were obtained by the solvent thermolysis of indium tris-alkylxanthates in ethylene glycol at 196 degrees C, and were characterized by elemental analysis, IR, powder XRD, and XPS techniques. TEM results showed that the size of beta-In2S3 nanoparticles depended on the nature of the precursor used. The optical properties of beta-In2S3 nanocrystals have shown quantum confinement of the excitonic transition.

  18. The ATM Kinase Induces MicroRNA Biogenesis in the DNA Damage Response

    PubMed Central

    Zhang, Xinna; Wan, Guohui; Berger, Franklin G.; He, Xiaoming; Lu, Xiongbin

    2011-01-01

    SUMMARY The DNA damage response involves a complex network of processes that detect and repair DNA damage. Here we show that miRNA biogenesis is globally induced upon DNA damage in an ATM-dependent manner. About one fourth of miRNAs are significantly up-regulated after DNA damage, while loss of ATM abolishes their induction. KSRP (KH-type splicing regulatory protein) is a key player that translates DNA damage signaling to miRNA biogenesis. The ATM kinase directly binds to and phosphorylates KSRP, leading to enhanced interaction between KSRP and pri-miRNAs and increased KSRP activity in miRNA processing. Mutations of the ATM phosphorylation sites of KSRP impaired its activity in regulating miRNAs. These findings reveal a mechanism by which DNA damage signaling is linked to miRNA biogenesis. PMID:21329876

  19. The role of praseodymium substituted ions on electrical and magnetic properties of Mg spinel ferrites

    NASA Astrophysics Data System (ADS)

    Farid, Muhammad Tahir; Ahmad, Ishtiaq; Kanwal, Muddassara; Murtaza, Ghulam; Ali, Irshad; Khan, Sajjad Ahmad

    2017-04-01

    Spinel ferrites with composition MgPryFe2-yO4 (y=0.0, 0.025, 0.05, 0.075, 0.10) were successfully synthesized using sol-gel auto-combustion technique. The structural prisoperties of a prepared sintered powder were characterized with the help of X-ray Diffraction (XRD) and then also by using Scanning electron microscopy (SEM). Electrical measurements demonstrate that resistivity and activation energy increases with the Praseodymium substitution while dc resistivity decreases with the rise of temperature showing the semiconductor nature of the synthesized ferrites. Remanence and the saturation magnetization (Ms) decrease while coercivity (Hc) also increases with the increase in praseodymium contents. Anisotropic constant is observed to exhibit similar behavior as HC. The above mentioned parameters suggest that the synthesized samples are favorable for microwave absorbing purposes.

  20. Grain egression: A new mechanism of fatigue-crack initiation in Ti-6Al-4V

    NASA Astrophysics Data System (ADS)

    Gilbert, Jeremy L.; Piehler, Henry R.

    1989-09-01

    A new mechanism of fatigue-crack initiation (FCI), grain egression, was observed in the course of investigating corrosion-fatigue crack initiation in Ti-6A1-4V hip prostheses fabricated using three different processes. Extensive scanning electron microscopy (SEM) was used to document this new mechanism as well as the other FCI mechanisms operating. Grain egression entails the fracture and egression of primary α grains from the surface of the sample, resulting in a sharp pit that subsequently acts as the site of crack initiation. The different sizes and morphologies of the grain-egression sites observed are very similar to the sizes and morphologies of the pri-mary α grains resulting from the three different fabrication processes, providing further evidence for grain egression as an operative FCI mechanism.

  1. Pressure-induced structural phase transition and elastic properties of rare earth Pr chalcogenides and pnictides

    NASA Astrophysics Data System (ADS)

    Varshney, Dinesh; Shriya, Swarna; Varshney, Meenu; Khenata, R.

    2015-01-01

    Pressure-induced structural aspects and elastic properties of NaCl-type (B1) to CsCl-type (B2) structure in praseodymium chalcogenides and pnictides are presented. Ground-state properties are numerically computed by considering long-range Coulomb interactions, Hafemeister and Flygare type short-range overlap repulsion, and van der Waals interaction in the interionic potential. From the elastic constants, Poisson's ratio ν, the ratio RG/B of G (shear modulus) over B (bulk modulus), anisotropy parameter, shear and Young's moduli, Lamé's constant, Kleinman parameter, elastic wave velocity and thermodynamical property such as Debye temperature are calculated. Poisson's ratio ν and the ratio RG/B indicate that PrX and PrY are brittle in B1 phase and ductile in B2 phase. To our knowledge, this is the first quantitative theoretical prediction of the ductile (brittle) nature of praseodymium chalcogenides and pnictides and still awaits experimental confirmation.

  2. Supreme Court Hears Privacy Case Between NASA and Jet Propulsion Laboratory Scientists

    NASA Astrophysics Data System (ADS)

    Showstack, Randy

    2010-10-01

    After NASA put into practice the 2004 Homeland Security Presidential Directive-12, known as HSPD-12, Dennis Byrnes talked to then-NASA administrator Michael Griffin. Byrnes recalls that Griffin told him in 2007 that if he didn’t like the agency's implementation of HSPD-12, he should go to court. That's exactly what Byrnes, an employee of the California Institute of Technology (Caltech) working as a senior engineer at NASA's Jet Propulsion Laboratory (JPL) in Pasadena, Calif., did. Concerned about prying and open-ended background investigations of federal contractors through NASA's implementation of HSPD-12, he, along with lead plaintiff Robert Nelson and 26 other Caltech employees working at JPL, sued NASA. Following several lower court decisions, including an injunction issued by a U.S. federal appeals court in response to a plaintiff motion, the case made it all the way to the U.S. Supreme Court, which heard oral arguments on 5 October.

  3. Non-oxo vanadium(IV) alkoxide chemistry: solid state structures, aggregation equilibria and thermochromic behaviour in solution.

    PubMed

    Westrup, Kátia C M; Gregório, Thaiane; Stinghen, Danilo; Reis, Dayane M; Hitchcock, Peter B; Ribeiro, Ronny R; Barison, Andersson; Back, Davi F; de Sá, Eduardo L; Nunes, Giovana G; Soares, Jaísa F

    2011-04-07

    The reversible thermochromic behaviour of homoleptic [{V(OR)(4)}(n)] complexes in solution [R = Pr(i) (product I), Bu(s) (B(s)), Nep (N) and Cy (C)] is accounted for the existence of an aggregation equilibrium involving dimeric and monomeric species in which vanadium(iv) is respectively five- and four-coordinate. Bulky R groups such as Bu(t) and Pe(t) (tert-pentoxide) prevent aggregation and therefore give rise to exclusively mononuclear compounds (B(t) and P(t), respectively) that are not thermochromic. The complexes and their temperature-dependent interconversion were characterised by single crystal X-ray diffractometry, magnetic susceptibility measurements and electronic, FTIR and EPR spectroscopies in a wide temperature range. Equilibrium constants and enthalpy and entropy changes for the dimerization reactions have been determined and compared with literature data.

  4. The N domain of Argonaute drives duplex unwinding during RISC assembly.

    PubMed

    Kwak, Pieter Bas; Tomari, Yukihide

    2012-01-10

    Small RNAs, such as microRNAs and small interfering RNAs, act through Argonaute (Ago) proteins as a part of RNA-induced silencing complexes (RISCs). To make RISCs, Ago proteins bind and subsequently unwind small RNA duplexes, finally leaving one strand stably incorporated. Here we identified the N domain of human AGO2 as the initiator of duplex unwinding during RISC assembly. We discovered that a functional N domain is strictly required for small RNA duplex unwinding but not for precedent duplex loading or subsequent target cleavage. We postulate that RISC assembly is tripartite, comprising (i) RISC loading, whereby Ago undergoes conformational opening and loads a small RNA duplex, forming pre-RISC; (ii) wedging, whereby the end of the duplex is pried open through active wedging by the N domain, in preparation for unwinding; and (iii) unwinding, whereby the passenger strand is removed through slicer-dependent or slicer-independent unwinding, forming mature RISC.

  5. A Novel Method for Producing Transgenic Enzymes and Peptides

    DTIC Science & Technology

    2006-05-31

    M. Liebergesell, M. H . Madkour , F. Mayer, U. Pieper-Furst, A. Pries, H . E. Valentin, et al. 1995. Considerations on the structure and biochemistry...co nc en tr at io n (g D C W /L ) 0.0 20.0 40.0 60.0 80.0 100.0 120.0 140.0 S pe ci fic A ct iv ity o f O P H fo r P ar ao xo n (U /m g) OUR...DNA region analyzed. The open reading frame of the oph gene is indicated in the figure while H refers to the HindIII restriction sites. A

  6. Factors that encourage females to pursue physical science careers: Testing five common hypotheses

    NASA Astrophysics Data System (ADS)

    Hazari, Zahra; Potvin, Geoff; Lock, Robynne M.; Lung, Florin; Sadler, Philip M.; Sonnert, Gerhard

    2012-03-01

    There are many hypotheses regarding factors that may encourage female students to pursue careers in the physical sciences. Using Propensity Score Matching (PSM) on national data (n=7505) drawn from the Persistence Research in Science and Engineering (PRiSE) project, we test five commonly held beliefs including having a single-sex physics class, having a female physics teacher, having female scientist guest speakers in physics class, discussing the work of women scientists in physics class, and discussing the under-representation of women in physics class. The effect of these experiences is compared for female students who are matched on several factors, including parental education, prior science/math interests, and academic background, thereby controlling for the effect of many confounding variables.

  7. Stress analysis of closure bolts for shipping casks

    SciTech Connect

    Mok, G.C.; Fischer, L.E. ); Hsu, S.T. )

    1993-01-01

    This report specifies the requirements and criteria for stress analysis of closure bolts for shipping casks containing nuclear spent fuels or high level radioactive materials. The specification is based on existing information conceming the structural behavior, analysis, and design of bolted joints. The approach taken was to extend the ASME Boiler and Pressure Vessel Code requirements and criteria for bolting analysis of nuclear piping and pressure vessels to include the appropriate design and load characteristics of the shipping cask. The characteristics considered are large, flat, closure lids with metal-to-metal contact within the bolted joint; significant temperature and impact loads; and possible prying and bending effects. Specific formulas and procedures developed apply to the bolt stress analysis of a circular, flat, bolted closure. The report also includes critical load cases and desirable design practices for the bolted closure, an in-depth review of the structural behavior of bolted joints, and a comprehensive bibliography of current information on bolted joints.

  8. Extraction, enumeration and identification methods for monitoring microplastics in the environment

    NASA Astrophysics Data System (ADS)

    Qiu, Qiongxuan; Tan, Zhi; Wang, Jundong; Peng, Jinping; Li, Meimin; Zhan, Zhiwei

    2016-07-01

    There is much research on the occurrence, pollution characteristics and impacts of microplastics in the marine environment but this omits factors which play important roles in the analysis of microplastics. This review summarizes the methods and techniques in the extraction from sediment, seawater and organisms, and assesses their advantages and limitations according to different experimental conditions, such as salt solution and reagents added to remove organic matter. Similarly, this overview includes the enumeration methods of microplastics by many kinds of microscopes (e.g. stereomicroscope, fluorescent microscope, scanning electron microscope). Advantages and challenges of using micro-FTIR, ART-FTIR, FPA-FTIR, Pry-GC/MS, and Raman spectroscopy in the identification methods are also discussed. This review suggests that monitoring microplastics needs standardized protocols for extraction, identification and quantification and that further research on the effects of microplastics to human health is needed.

  9. Examining Physics Career Interests: Recruitment and Persistence into College

    NASA Astrophysics Data System (ADS)

    Lock, R. M.; Hazari, Z.; Sadler, P. M.; Sonnert, G.

    2012-03-01

    Compared to the undergraduate population, the number of students obtaining physics degrees has been declining since the 1960s. This trend continues despite the increasing number of students taking introductory physics courses in high school and college. Our work uses an ex-post facto design to study the factors that influence students' decision to pursue a career in physics at the beginning of college. These factors include high school physics classroom experiences, other science-related experiences, and students' career motivations. The data used in this study is drawn from the Persistence Research in Science and Engineering (PRiSE) Project, a large-scale study that surveyed a nationally representative sample of college/university students enrolled in introductory English courses about their interests and prior experiences in science.

  10. The genome sequence of Blochmannia floridanus: Comparative analysis of reduced genomes

    PubMed Central

    Gil, Rosario; Silva, Francisco J.; Zientz, Evelyn; Delmotte, François; González-Candelas, Fernando; Latorre, Amparo; Rausell, Carolina; Kamerbeek, Judith; Gadau, Jürgen; Hölldobler, Bert; van Ham, Roeland C. H. J.; Gross, Roy; Moya, Andrés

    2003-01-01

    Bacterial symbioses are widespread among insects, probably being one of the key factors of their evolutionary success. We present the complete genome sequence of Blochmannia floridanus, the primary endosymbiont of carpenter ants. Although these ants feed on a complex diet, this symbiosis very likely has a nutritional basis: Blochmannia is able to supply nitrogen and sulfur compounds to the host while it takes advantage of the host metabolic machinery. Remarkably, these bacteria lack all known genes involved in replication initiation (dnaA, priA, and recA). The phylogenetic analysis of a set of conserved protein-coding genes shows that Bl. floridanus is phylogenetically related to Buchnera aphidicola and Wigglesworthia glossinidia, the other endosymbiotic bacteria whose complete genomes have been sequenced so far. Comparative analysis of the five known genomes from insect endosymbiotic bacteria reveals they share only 313 genes, a number that may be close to the minimum gene set necessary to sustain endosymbiotic life. PMID:12886019

  11. Brazilian Amazon Territory Vegetation Study Using SAR Polarimetry Methods

    NASA Astrophysics Data System (ADS)

    Stavroula, Kanakaki; Pottier, Eric; Parcharidis, Issaak

    2016-08-01

    The satellite scene that we used is ALOS - PALSAR PRI mode fully-polarimetric data (polarizations: HH, VV, VH and HV).Polarimetric SAR data possess a high potential for classification of the Earth surface [1].H-A-alpha decomposition that is one of the most frequently used ones and Freeman-Durden decomposition that has been proved ideal for vegetation analysis and classification according to many studies. H-A-alpha decomposition extracts 3 basic parameters: Entropy, Anisotropy and alpha angle. Parameters that give different information for the scene.Entropy is a measure that indicates scattering characteristics of land and the higher values it gets the more intense the backscattering is.Alpha angle, usually, gives the same results with entropy. It gets different values from entropy parameter and each value gives important information about the scatterer type.Anisotropy parameter is an additional one, which, combining to the other 2 parameters offers a better classification.

  12. [Monitoring spatio-temporal spectral characteristics of leaves of karst plant during dehydration using a field imaging spectrometer system].

    PubMed

    Liu, Bo; Tong, Qing-Xi; Zhang, Li-Fu; Zhang, Xia; Yue, Yue-Min; Zhang, Bing

    2012-06-01

    As the supplement of spaceborne and airborne imaging spectrometer system, field Imaging spectrometer system spans a very broad range of applications. Imaging spectrometer system of this new kind could provide vital information especially for which spaceborne or airborne remote sensing could not be competent, such as proximal detection of plant population, individual plant or plant organs for site-specific management in precision agriculture. A new self-developed imaging spectrometer system was utilized to monitor spatio-temporal dynamics of spectral changes of plant leaves in response to dehydration. lThe phenomenon of blue shift of red edge of plant leaves was successfully detected and visualized in the form of image series. The patterns of photochemical reflectance index (PRI) of leaves during dehydration were compared and confirmed by fluorescence parameter quantum yield. Our results show that FISS has good spectral and radiometric properties and could be used in quantitative researches and precise information mapping.

  13. Cytogenic effects of diatrizoate and ioxaglate on patients undergoing excretory urography

    SciTech Connect

    Nunez, M.E.; Sinues, B. )

    1990-06-01

    Possible cytogenic alterations due to radiologic contrast medium in patients undergoing a common radiologic examination is studied. Two groups of 20 patients each were used. Group I consisted of patients undergoing excretory urography, using sodium and meglumine diatrizoate as contrast. A different agent, sodium and meglumine ioxaglate, was used with group II. Three blood samples were taken from each patient before urography, immediately after urography, and 1 week later. The frequency of sister chromatid exchanges (SCE) and chromosomal aberrations (CA) were found to increase significantly in the B samples from both groups, that of group I being higher (P less than .01 compared with P less than .05). Furthermore, these alterations were found to persist in the C samples from group I. No modification of the Proliferating Rate Index (PRI) was found. The osmolarity or other components of the contrast media studied could be involved in the process. The results indicate that ioxaglate produces less cytogenic damage than diatrizoate.

  14. MAX-DOAS measurements in southern China: retrieval of aerosol extinctions and validation using ground-based in-situ data

    NASA Astrophysics Data System (ADS)

    Li, X.; Brauers, T.; Shao, M.; Garland, R. M.; Wagner, T.; Deutschmann, T.; Wahner, A.

    2010-03-01

    We performed MAX-DOAS measurements during the PRiDe-PRD2006 campaign in the Pearl River Delta region 50 km north of Guangzhou, China, for 4 weeks in June 2006. We used an instrument sampling at 7 different elevation angles between 3° and 90°. During 9 cloud-free days, differential slant column densities (DSCDs) of O4 (O2 dimer) absorptions between 351 nm and 389 nm were evaluated for 6 elevation angles. Here, we show that radiative transfer modeling of the DSCDS can be used to retrieve the aerosol extinction and the height of the boundary layer. A comparison of the aerosol extinction with simultaneously recorded, ground based nephelometer data shows excellent agreement.

  15. Chemical ordering suppresses large-scale electronic phase separation in doped manganites

    NASA Astrophysics Data System (ADS)

    Zhu, Yinyan; Du, Kai; Niu, Jiebin; Lin, Lingfang; Wei, Wengang; Liu, Hao; Lin, Hanxuan; Zhang, Kai; Yang, Tieying; Kou, Yunfang; Shao, Jian; Gao, Xingyu; Xu, Xiaoshan; Wu, Xiaoshan; Dong, Shuai; Yin, Lifeng; Shen, Jian

    2016-04-01

    For strongly correlated oxides, it has been a long-standing issue regarding the role of the chemical ordering of the dopants on the physical properties. Here, using unit cell by unit cell superlattice growth technique, we determine the role of chemical ordering of the Pr dopant in a colossal magnetoresistant (La1-yPry)1-xCaxMnO3 (LPCMO) system, which has been well known for its large length-scale electronic phase separation phenomena. Our experimental results show that the chemical ordering of Pr leads to marked reduction of the length scale of electronic phase separations. Moreover, compared with the conventional Pr-disordered LPCMO system, the Pr-ordered LPCMO system has a metal-insulator transition that is ~100 K higher because the ferromagnetic metallic phase is more dominant at all temperatures below the Curie temperature.

  16. Evolutionary model of stock markets

    NASA Astrophysics Data System (ADS)

    Kaldasch, Joachim

    2014-12-01

    The paper presents an evolutionary economic model for the price evolution of stocks. Treating a stock market as a self-organized system governed by a fast purchase process and slow variations of demand and supply the model suggests that the short term price distribution has the form a logistic (Laplace) distribution. The long term return can be described by Laplace-Gaussian mixture distributions. The long term mean price evolution is governed by a Walrus equation, which can be transformed into a replicator equation. This allows quantifying the evolutionary price competition between stocks. The theory suggests that stock prices scaled by the price over all stocks can be used to investigate long-term trends in a Fisher-Pry plot. The price competition that follows from the model is illustrated by examining the empirical long-term price trends of two stocks.

  17. Does sun-induced Chlorophyll fluorescence well capture canopy photosynthesis in a rice paddy?

    NASA Astrophysics Data System (ADS)

    Kimm, H.; Ryu, Y.; Kang, M.; Kim, J.

    2015-12-01

    Sun-induced chlorophyll fluorescence (SiF) has emerged as a convincing indicator of carbon assimilation rates under diverse environmental conditions. Here, we present a continuous observation system of SiF at a sporadically irrigated rice paddy site in South Korea. Our site also includes automatic observation systems for eddy covariance, water table depth, and spectral sensors which are composed of LED sensors, and RGB- and NIR cameras. Additionally, we conducted manual observations of photosynthetic parameters (Li-6400), leaf area index (LAI-2200), NDVI and PRI (ASD FieldSpec) once per ten days on average. By analyzing manual- and automatic field observations, we quantify carbon budget of the site. Finally, we investigate how accurately SiF detects canopy photosynthesis, and discuss what factors mainly control canopy photosynthesis.

  18. [Characteristics of Pahs pollution in sediments from Leizhou coastal marine area, Liusha Bay and Shenzhen Bay].

    PubMed

    Zhao, Li-Rong; Sun, Sheng-Li; Ke, Sheng

    2012-04-01

    Leizhou coastal marine area, Liusha Bay and Shenzhen Bay represented open coastal area and half-closed bay, respectively. This study discussed the differences of PAHs concentration levels, spatial distribution and sources in sediments from these three marine areas. The results showed that detected ratios of 15 PAHs were 100%, and major compounds were 3-ring and 4-ring PAHs, especialy Phe, Fla, Pry and Bbf; Sigma PAHs concentration was Leizhou < Shenzhen < Liusha. In spatial distribution, PAHs concentrations were the east < the south < the west in Leizhou; the inside > the outside, and the aquaculture > the non-aquaculture in Liusha Bay and Shenzhen Bay. It suggested that large-scale mariculture inside bay played an important role in PAHs pollution and might make it serious. Oil, fossil fuels and biomass burning were the dominant sources of PAHs in sediments from Leizhou coastal area, Liusha Bay and Shenzhen Bay.

  19. Epigenetic medicine and fetal alcohol spectrum disorders

    PubMed Central

    Resendiz, Marisol; Chen, Yuanyuan; Öztürk, Nail C; Zhou, Feng C

    2013-01-01

    Epigenetic medicine is still in its infancy. To date, only a handful of diseases have documented epigenetic correlates upstream of gene regulation including cancer, developmental syndromes and late-onset diseases. The finding that epigenetic markers are dynamic and heterogeneous at tissue and cellular levels, combined with recent identification of a new form of functionally distinct DNA methylation has opened a wider window for investigators to pry into the epigenetic world. It is anticipated that many diseases will be elucidated through this epigenetic inquiry. In this review, we discuss the normal course of DNA methylation during development, taking alcohol as a demonstrator of the epigenetic impact of environmental factors in disease etiology, particularly the growth retardation and neurodevelopmental deficits of fetal alcohol spectrum disorders. PMID:23414322

  20. ESO and the UK. Why does the UK need more astronomy?

    NASA Astrophysics Data System (ADS)

    Gilmore, Gerry

    2002-09-01

    “What was God doing before he made heaven and earth? … He was preparing hell for those who would pry into such profound mysteries.''1 This joke was already venerable when quoted by Augustine, in his analysis of the ancient and still modern problem, time. Understanding the origin(s), meaning( s), future(s), and significance(s) of time, space, existence, mass, matter, geometry, of origins and endings, of what and where, remains one of the greatest intellectual endeavours of the human mind. From the caves of Lascaux, through the megaliths of Stonehenge to the dreamtime of Australia, mankind has striven to understand his origins and future. Our generation has the exceptional good fortune to be living through the greatest increase in knowledge relevant to these fundamental questions since someone first looked up at night. We are also increasing understanding, while realizing how much more there is in the Universe still be learned and understood.

  1. An Analysis of the Productivity and Operating Cost of the AEDC Propulsion Wind Tunnels

    DTIC Science & Technology

    1987-01-01

    C355 IEOC IT I~PRI~T8 ElK 2.1 81 a. C~N~ 642 66 C!31 ~ C fiARN~ - SALC 2.2 81 v. STE~RT 0 ~ LO COOl AD F-16/ i t iS IU L ~ 8ALC 2.3 81 8. SO...COMPUTER HARDWARE ’: .. "% "- " 4. The OAS computer system consists of an IBM FC/XT with %he following options: o o o o o 0 O 640K Memory...from the. mainframe business com- puter. 2.3 COMPUTER SOFTWARE • o o O 0 Software for the OAS computer consists of: Lotus 123 ®, Version 2

  2. [Thought Experiments in Historiographic Function: Max Weber on Eduard Meyer and the Question of Counterfactuality].

    PubMed

    Ernst, Florian

    2015-03-01

    Thought Experiments in Historiographic Function: Max Weber on Eduard Meyer and the Question of Counterfactuality. Max Weber's remarks on his colleague Eduard Meyer regarding counterfactual reasoning in history reflects a significant shift during the Methodenstreit around 1900. The question of attributing historical change strictly to either individual causes or abstract general laws has been tackled in a new way: By counterfactual reasoning a historian should be able to detect the most significant (and therefore meaningful) cause, event, or action for a certain historical outcome. Following Fritz Ringer, this paper argues that given the predominating methods of the natural sciences, scholars of the humanities conducted historical research by counterfactual thought experiments. This way, Weber pried open contemporary narratives (e.g. historicism), and by employing a unique historical causal analysis he made way for refined concepts to offer a model of interpretation that gave hope for a more feasible, practice-oriented approach to historical research than the epistemological discussions had hitherto offered.

  3. [Quantitative determination of blood-plasma protein fractions using micro-agar gel electrophoresis in highly pregnant dairy cows close to the day of delivery].

    PubMed

    Blauärmel, H; Krüger, I

    1976-01-01

    Ten clinically intact Jersey dairy cows in advanced pregnancy were examined and tested over a span of three hours before to seven hours after parturition. Blood was sampled from them in intervals of ten tp 20 minutes, and the blood plasma was checked total protein and the "classical" fractions. The average total protein value of the plasma samples was 6.5 g/100 ml. The albumin and alpha 1-fractions were inversely proportional the psi-globulin concentrations before, during, and after parturition. The albumin values were on a declining trend three hours prior to parturition and recommenced to rise ten minutes prior to parturition. They were relatively constant after parturition. The pri-globulins went up slightly prior to parturition, but that rise remained statistically unsecured. It is assumed that in a certain period of time from before to somewhen after parturition change of the fractions is caused by the corticoids and sexual hormones.

  4. Public/private key certification authority and key distribution. Draft

    SciTech Connect

    Long, J.P.; Christensen, M.J.; Sturtevant, A.P.; Johnston, W.E.

    1995-09-25

    Traditional encryption, which protects messages from prying eyes, has been used for many decades. The present concepts of encryption are built from that heritage. Utilization of modern software-based encryption techniques implies much more than simply converting files to an unreadable form. Ubiquitous use of computers and advances in encryption technology coupled with the use of wide-area networking completely changed the reasons for utilizing encryption technology. The technology demands a new and extensive infrastructure to support these functions. Full understanding of these functions, their utility and value, and the need for an infrastructure, takes extensive exposure to the new paradigm. This paper addresses issues surrounding the establishment and operation of a key management system (i.e., certification authority) that is essential to the successful implementation and wide-spread use of encryption.

  5. Department of Transportation Data Communications Requirements Analysis.

    DTIC Science & Technology

    1981-07-01

    202426 RAY SMITH HDT TCC AN HZ200 ASYN I CARL 300 - 7 HMDAHL ,1; EL O’.T 0S026 WASH DC 202426 RAY SMITH HDOT TAOS AN VTI(,O ASYN I CA L 3m,, Trf P’ I’r... CARL 300 F.L PRIME s , (9T 0SO2 WASH DC 202426 RAY SMITH HOOT TAOS AN 𔃻O0 A’ Y I CARL 300 Ti( FI IME - tST 0S030 WASH DC 20242o RAY SMITH HOT TAOS AN...VTIOO hSYN I CABL 30) T17 .RIME INI£9 S 0031 WASH DC 202426 RAY SMITH HOOT TAOS AN VTIOO ASYN I CARL 300 TX PriME !N F OST 0S032 WASH DC 202426 RAY

  6. A study of the compatibility of an existing CFD package with a broader class of material constitutions

    NASA Technical Reports Server (NTRS)

    French, K. W., Jr.

    1985-01-01

    The flexibility of the PHOENICS computational fluid dynamics package was assessed along two general avenues; parallel modeling and analog modeling. In parallel modeling the dependent and independent variables retain their identity within some scaling factors, even though the boundary conditions and especially the constitutive relations do not correspond to any realistic fluid dynamic situation. PHOENICS was used to generate a CFD model that should exhibit the physical anomalies of a granular medium and permit reasonable similarity with boundary conditions typical to membrane or porous piston loading. A considerable portion of the study was spent prying into the existing code with a prejudice toward rate type and disarming any inherent fluid behavior. The final stages of the study were directed at the more specific problem of multiaxis loading of cylindrical geometry with a concern for the appearance of bulging, cross slab shear failure modes.

  7. Tracking photosynthetic efficiency with narrow-band spectroradiometry

    NASA Technical Reports Server (NTRS)

    Gamon, John A.; Field, Christopher B.

    1992-01-01

    Narrow-waveband spectroradiometry presents the possibility of detecting subtle signals closely related to the current physiological state of vegetation. One such signal related to the epoxidation state of the xanthophyll cycle pigments, violaxanthin, antheraxanthin, and zeaxanthin is discussed. Recent advances in plant ecophysiology demonstrated a close relationship between these pigments and the regulatory state of photosystem 2 in photosynthesis. Our recent field studies of sunflower (Helianthus annuus) and oak (Quercus agrifolia) demonstrated that a 'xanthophyll signal' can be isolated from the diurnal reflectance spectra of intact canopies. Furthermore, the xanthophyll signal can be used to derive a 'physiological reflectance index' (PRI) that closely correlates with the actual photosynthetic efficiency (defined as the photosynthetic rate divided by the incident PAR) in closed canopies. If these signals were detectable in Airborne Visible/Infrared Imaging Spectrometers (AVIRIS) images, they could lead to improved remote estimates of photosynthetic fluxes.

  8. MIR486 — EDRN Public Portal

    Cancer.gov

    microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. miRNAs bind to complementary sequences in the 3' UTR of multiple target mRNAs, usually silencing the targeted mRNA. miRNAs may trigger the cleavage of their target molecules or act as translational repressors. miRNAs are thought to target approximateley 60% of all genes and are able to repress hundreds of targets each.

  9. MIR21 — EDRN Public Portal

    Cancer.gov

    From NCBI Gene: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. miRNAs bind to complementary sequences in the 3' UTR of multiple target mRNAs, usually silencing the targeted mRNA. miRNAs may trigger the cleavage of their target molecules or act as translational repressors. miRNAs are thought to target approximatley 60% of all genes and are able to repress hundreds of targets each.

  10. MIR375 — EDRN Public Portal

    Cancer.gov

    microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. miRNAs bind to complementary sequences in the 3' UTR of multiple target mRNAs, usually silencing the targeted mRNA. miRNAs may trigger the cleavage of their target molecules or act as translational repressors. miRNAs are thought to target approximateley 60% of all genes and are able to repress hundreds of targets each.

  11. MIR210 — EDRN Public Portal

    Cancer.gov

    From NCBI Gene: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. miRNAs bind to complementary sequences in the 3' UTR of multiple target mRNAs, usually silencing the targeted mRNA. miRNAs may trigger the cleavage of their target molecules or act as translational repressors. miRNAs are thought to target approximateley 60% of all genes and are able to repress hundreds of targets each.

  12. MIR200B — EDRN Public Portal

    Cancer.gov

    microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. miRNAs bind to complementary sequences in the 3' UTR of multiple target mRNAs, usually silencing the targeted mRNA. miRNAs may trigger the cleavage of their target molecules or act as translational repressors. miRNAs are thought to target approximateley 60% of all genes and are able to repress hundreds of targets each.

  13. MIR126 — EDRN Public Portal

    Cancer.gov

    From NCBI Gene: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. miRNAs bind to complementary sequences in the 3' UTR of multiple target mRNAs, usually silencing the targeted mRNA. miRNAs may trigger the cleavage of their target molecules or act as translational repressors. miRNAs are thought to target approximateley 60% of all genes and are able to repress hundreds of targets each.

  14. Patient-reported outcomes, patient-reported information: from randomized controlled trials to the social web and beyond.

    PubMed

    Baldwin, Mike; Spong, Andrew; Doward, Lynda; Gnanasakthy, Ari

    2011-01-01

    Internet communication is developing. Social networking sites enable patients to publish and receive communications very easily. Many stakeholders, including patients, are using these media to find new ways to make sense of diseases, to find and discuss treatments, and to give support to patients and their caregivers. We argue for a new definition of patient-reported information (PRI), which differs from the usual patient-reported outcomes (PRO). These new emergent data from the social web have important implications for decision making, at both an individual and a population level. We discuss new emergent technologies that will help aggregate this information and discuss how this will be assessed alongside the use of PROs in randomized controlled trials and how these new emergent data will be one facet of changing the relationship between the various stakeholders in achieving better co-created health.

  15. [Work as subsistence in Brazilian public hospitals].

    PubMed

    Vaghetti, Helena Heidtmann; Padilha, Maria Itayra; da Silva, Rosimeri Carvalho; de Almeida Simões, Jorge Manuel Trigo

    2009-01-01

    That was a review study that aimed to analyze the interpretations that authors of dissertations and thesis about the meanings expressed by health workers, about the relations of subsistence with the job, in the organizational culture of public hospitals in Brazil. Data were extracted from from dissertations and theses in the period from 2002 to 2006. The theoretical methodological reference laid in the interpretive anthropology by Clifford Geertz. The results point that the subsistence relations conduct to alienation from work. The payment generates economic non satisfaction that pry the need to have other jobs. The work stability feeds the disengagement and actions that stimulates the transgression of standards and help the own governs in public hospitals in Brazil.

  16. Inactivation of ku80 in the mushroom-forming fungus Schizophyllum commune increases the relative incidence of homologous recombination.

    PubMed

    de Jong, Jan F; Ohm, Robin A; de Bekker, Charissa; Wösten, Han A B; Lugones, Luis G

    2010-09-01

    Schizophyllum commune is the only mushroom-forming fungus in which targeted gene deletions by homologous recombination have been reported. However, these deletions occur with a low frequency. To overcome this, the ku80 gene of S. commune was deleted. This gene is involved in the nonhomologous end-joining system for DNA repair. The Deltaku80 strain was not affected in growth and development. However, the transformation efficiency was reduced up to 100-fold. This was accompanied by a strong increase in the relative number of transformants with a homologous integration of a knockout construct. Genes sc15, jmj3 and pri2 were deleted in the Deltaku80 strain. In total, seven out of 10 transformants showed a gene deletion. This frequency will facilitate a systematic analysis of gene function in S. commune.

  17. Optical Mixing Controlled Stimulated Scattering Instabilities Using Blue-Green Interaction Beams

    NASA Astrophysics Data System (ADS)

    Mardirian, M.; Afeyan, B.; Won, K.; Montgomery, D.; Hammer, J.; Kirkwood, R.; Schmitt, A.

    2003-10-01

    The optical mixing of blue and green laser beams in an underdense exploding foil plasma where a resonant EPW can be resonantly generated was examined experimentally on the Omega laser facility at LLE. The effect of this optical mixing generated large amplitude EPW on the SRS backscattering of a separate blue interaction/witness beam was measured. The backscattering and transmission of the Green beam, the backscattering of the witness beam and the transmission of the crossing blue beam were studied as a function of different beam energies to see how to optimize the disruption of the witness beam's backscattering levels by the introduction of controlled levels of fluctuations and incoherence into the plasma. Results will be compared to numerical simulations and previous PRI experiments where large levels of IAW turbulence was generated by using same color crossing laser beams.

  18. Linear force device

    NASA Technical Reports Server (NTRS)

    Clancy, John P.

    1988-01-01

    The object of the invention is to provide a mechanical force actuator which is lightweight and manipulatable and utilizes linear motion for push or pull forces while maintaining a constant overall length. The mechanical force producing mechanism comprises a linear actuator mechanism and a linear motion shaft mounted parallel to one another. The linear motion shaft is connected to a stationary or fixed housing and to a movable housing where the movable housing is mechanically actuated through actuator mechanism by either manual means or motor means. The housings are adapted to releasably receive a variety of jaw or pulling elements adapted for clamping or prying action. The stationary housing is adapted to be pivotally mounted to permit an angular position of the housing to allow the tool to adapt to skewed interfaces. The actuator mechanisms is operated by a gear train to obtain linear motion of the actuator mechanism.

  19. Genotoxicity studies on the antimicrobial drug sulfamethoxazole in cultured human lymphocytes.

    PubMed

    Abou-Eisha, Ahmed; Marcos, Ricard; Creus, Amadeu

    2004-11-14

    The genotoxicity of the antimicrobial drug sulfamethoxazole was evaluated in cultured human peripheral blood lymphocytes. The frequencies of sister-chromatid exchange (SCE) and micronuclei (MN) were scored as genetic endpoints. Both tests cover a wide range of induced genetic damage such as primary DNA damage, clastogenicity and aneugenicity. Cultures were set up with blood samples from two healthy donors and the treatment was done with different sulfamethoxazole concentrations ranging from 10 to 500 microg/ml. From the results obtained it appears that this drug is able to induce weak genotoxic effects, as revealed by the slight increase in the SCE and MN frequencies, at least at one of the two highest concentrations tested. However, the results of the SCE assay should be interpreted with caution because the increase is just significant. In addition, cyotoxic/cytostatic effects of sulfamethoxazole were revealed by a decrease in the proliferative rate index (PRI) and in the cytokinesis block proliferation index (CBPI).

  20. Characterization of sol-gel thin films of TiO2-PbO, TiO2-Bi2O3 and TiO2-CeO2 compositions

    NASA Astrophysics Data System (ADS)

    Aegerter, Michel A.; La Serra, Eliane R.; Martins Rodrigues, Ana C.; Kordas, George; Moore, Glenn A.

    1990-11-01

    Single and multilayer sol-gel thin films of Ti02-PbO, Ti02-Bi203 and Ti02-CeO2 composition were deposited on glasses using the dip coating technique. The precursors included Ti(OPri)4 chemically modified by acetyl acetone and diluted in PriOH and sols of Pb(OAc)2, Bi(NO3)3 5H20 diluted in acetic acid. The Ti02-Ce02 sol was prepared by mixing Ce NH2 (NO3 )6 in ethanol and then adding Ti (O-iso-C3H7 )4. Structure texture and homogeneity of their main constituants was established by XRD, XPS,SIMS and SEM-EDX techniques as a function of heat treatments.

  1. Observations of Saharan dust in the Caribbean and Implications for Regional Climate Variability

    NASA Technical Reports Server (NTRS)

    Remer, L.; Einaudi, Franco

    2001-01-01

    Massive quantities of dust aerosol, originating at source locations in the Saharan desert are frequently transported westward across the Atlantic. Saharan dust has been frequently identified at ground-based stations in South America, on Barbados, in Florida and in Texas. Recently, in July of 2000, the Puerto Rican Dust Experiment (PRiDE), consisting of researchers from the U.S. Navy, NASA, the University of Miami and the University of Puerto Rico joined together to study this important phenomenon. Numerical forecast models tracked each dust event as the dust left the African continent and transversed the Atlantic. Ground-based, ship-based, airborne and satellite sensors were used to characterize the physical and radiative properties of the dust aerosol. The dust plays an important role in terms of radiative forcing of regional climate. Satellite sensors such as NASA's EOS-MODIS aboard the Terra satellite will provide important continuing information on the dust aerosol and its climatic effects.

  2. Atmospheric Transmission Measurements at White Sands Missile Range, August 1978.

    DTIC Science & Technology

    1980-10-29

    oeay md Identify by black -. b-,) Atin usp Ii ric iran sm 155111 Laser proIpagat ion Iligh-resolut ion Fourier-tranlIrl Spiect roscopy 20 ABSTRACT... NRI . RILPfRt 8422 1.0 1.0 21IP7 3-2P3 1-OPIO 21lP6 3-2P2 14org 0 2 20.. 0.1 j I0.1 2M6.0 t ~ 2662. 2675.0 2675.0 Icm’ 1 2687. 2700.0 1.0 1.0 -- - 2-1...air Ie)mpe.r.Iiure % h 1 1 4 cm 1 yii % Ilstiqflr)ClI IWJIlItln 0 .11t,11i(1101 26 NRI R1 P()RI 1 422 PATH SELECTION Selection of’ a suitable path for

  3. Diagnostic Study of Atmosphere-Terrain Interaction Leading to the Formation of Dust Clouds and Poor Visibilities over the Near East Desert Areas.

    DTIC Science & Technology

    1985-09-30

    C . 01 so ;k ii-o- ;; % Z, -_ W . - -Z:-, -. D-- a I-AD 0 -t - a X.- c t...1040 ell r02 0 COO W 61 a" J FAL -t -- - - - -:am FAU4 "aw 0-" OVA. NJ .0. d OW 3 in C <Z:y 9. do- SP. do ’ t16 a!- O"a a am a- 0 a, ft00 16...SOWER 0 40 r02 ow 61 as PRi %t PRJ9G SPRING 04 W - *’I ’ T. j 0 a- 0 C .0 N 65 a- 0’. a- E a, 20 30 63 ig Areas in which poor visibility was

  4. Chemical ordering suppresses large-scale electronic phase separation in doped manganites

    PubMed Central

    Zhu, Yinyan; Du, Kai; Niu, Jiebin; Lin, Lingfang; Wei, Wengang; Liu, Hao; Lin, Hanxuan; Zhang, Kai; Yang, Tieying; Kou, Yunfang; Shao, Jian; Gao, Xingyu; Xu, Xiaoshan; Wu, Xiaoshan; Dong, Shuai; Yin, Lifeng; Shen, Jian

    2016-01-01

    For strongly correlated oxides, it has been a long-standing issue regarding the role of the chemical ordering of the dopants on the physical properties. Here, using unit cell by unit cell superlattice growth technique, we determine the role of chemical ordering of the Pr dopant in a colossal magnetoresistant (La1−yPry)1−xCaxMnO3 (LPCMO) system, which has been well known for its large length-scale electronic phase separation phenomena. Our experimental results show that the chemical ordering of Pr leads to marked reduction of the length scale of electronic phase separations. Moreover, compared with the conventional Pr-disordered LPCMO system, the Pr-ordered LPCMO system has a metal–insulator transition that is ∼100 K higher because the ferromagnetic metallic phase is more dominant at all temperatures below the Curie temperature. PMID:27053071

  5. Mother’s Emotional and Posttraumatic Reactions after a Preterm Birth: The Mother-Infant Interaction Is at Stake 12 Months after Birth

    PubMed Central

    Petit, Anne-Cécile; Eutrope, Julien; Thierry, Aurore; Bednarek, Nathalie; Aupetit, Laurence; Saad, Stéphanie; Vulliez, Lauriane; Sibertin-Blanc, Daniel; Nezelof, Sylvie; Rolland, Anne-Catherine

    2016-01-01

    Objectives Very preterm infants are known to be at risk of developmental disabilities and behavioural disorders. This condition is supposed to alter mother-infant interactions. Here we hypothesize that the parental coping with the very preterm birth may greatly influence mother-infant interactions. Methods 100 dyads were included in 3 university hospitals in France. Preterm babies at higher risk of neurodevelopmental sequelae (PRI>10) were excluded to target the maternal determinants of mother-infant interaction. We report the follow-up of this cohort during 1 year after very preterm birth, with regular assessment of infant somatic state, mother psychological state and the assessment of mother-infant interaction at 12 months by validated scales (mPPQ, HADS, EPDS, PRI, DDST and PIPE). Results We show that the intensity of post-traumatic reaction of the mother 6 months after birth is negatively correlated with the quality of mother-infant interaction at 12 months. Moreover, the anxious and depressive symptoms of the mother 6 and 12 months after birth are also correlated with the quality of mother-infant interaction at 12 months. By contrast, this interaction is not influenced by the initial affective state of the mother in the 2 weeks following birth. In this particular population of infants at low risk of sequelae, we also show that the quality of mother-infant interaction is not correlated with the assessment of the infant in the neonatal period but is correlated with the fine motor skills of the baby 12 months after birth. Conclusions This study suggests that mothers’ psychological condition has to be monitored during the first year of very preterm infants’ follow-up. It also suggests that parental interventions have to be proposed when a post-traumatic, anxious or depressive reaction is suspected. PMID:27022953

  6. Spatial Variation of Leaf Optical Properties in a Boreal Forest Is Influenced by Species and Light Environment.

    PubMed

    Atherton, Jon; Olascoaga, Beñat; Alonso, Luis; Porcar-Castell, Albert

    2017-01-01

    Leaf Optical Properties (LOPs) convey information relating to temporally dynamic photosynthetic activity and biochemistry. LOPs are also sensitive to variability in anatomically related traits such as Specific Leaf Area (SLA), via the interplay of intra-leaf light scattering and absorption processes. Therefore, variability in such traits, which may demonstrate little plasticity over time, potentially disrupts remote sensing estimates of photosynthesis or biochemistry across space. To help to disentangle the various factors that contribute to the variability of LOPs, we defined baseline variation as variation in LOPs that occurs across space, but not time. Next we hypothesized that there were two main controls of potentially disruptive baseline spatial variability of photosynthetically-related LOPs at our boreal forest site: light environment and species. We measured photosynthetically-related LOPs in conjunction with morphological, biochemical, and photosynthetic leaf traits during summer and across selected boreal tree species and vertical gradients in light environment. We then conducted a detailed correlation analysis to disentangle the spatial factors that control baseline variability of leaf traits and, resultantly, LOPs. Baseline spatial variability of the Photochemical Reflectance Index (PRI) was strongly influenced by species and to a lesser extent light environment. Baseline variability of spectral fluorescence derived LOPs was less influenced by species; however at longer near-infrared wavelengths, light environment was an important control. In summary, remote sensing of chlorophyll fluorescence has good potential to detect variation in photosynthetic performance across space in boreal forests given reduced sensitivity to species related baseline variability in comparison to the PRI. Our results also imply that spatially coarse remote sensing observations are potentially unrepresentative of the full scope of natural variation that occurs within a boreal

  7. Water stress detection in potato plants using leaf temperature, emissivity, and reflectance

    NASA Astrophysics Data System (ADS)

    Gerhards, Max; Rock, Gilles; Schlerf, Martin; Udelhoven, Thomas

    2016-12-01

    Water stress is one of the most critical abiotic stressors limiting crop development. The main imaging and non-imaging remote sensing based techniques for the detection of plant stress (water stress and other types of stress) are thermography, visible (VIS), near- and shortwave infrared (NIR/SWIR) reflectance, and fluorescence. Just very recently, in addition to broadband thermography, narrowband (hyperspectral) thermal imaging has become available, which even facilitates the retrieval of spectral emissivity as an additional measure of plant stress. It is, however, still unclear at what stage plant stress is detectable with the various techniques. During summer 2014 a water treatment experiment was run on 60 potato plants (Solanum tuberosum L. Cilena) with one half of the plants watered and the other half stressed. Crop response was measured using broadband and hyperspectral thermal cameras and a VNIR/SWIR spectrometer. Stomatal conductance was measured using a leaf porometer. Various measures and indices were computed and analysed for their sensitivity towards water stress (Crop Water Stress Index (CWSI), Moisture Stress Index (MSI), Photochemical Reflectance Index (PRI), and spectral emissivity, amongst others). The results show that water stress as measured through stomatal conductance started on day 2 after watering was stopped. The fastest reacting, i.e., starting on day 7, indices were temperature based measures (e.g., CWSI) and NIR/SWIR reflectance based indices related to plant water content (e.g., MSI). Spectral emissivity reacted equally fast. Contrarily, visual indices (e.g., PRI) either did not respond at all or responded in an inconsistent manner. This experiment shows that pre-visual water stress detection is feasible using indices depicting leaf temperature, leaf water content and spectral emissivity.

  8. Effects of cangrelor in coronary artery disease patients with and without diabetes mellitus: an in vitro pharmacodynamic investigation.

    PubMed

    Ferreiro, José L; Ueno, Masafumi; Tello-Montoliu, Antonio; Tomasello, Salvatore D; Capodanno, Davide; Capranzano, Piera; Dharmashankar, Kodlipet; Darlington, Andrew; Desai, Bhaloo; Rollini, Fabiana; Guzman, Luis A; Bass, Theodore A; Angiolillo, Dominick J

    2013-02-01

    Platelets from patients with diabetes mellitus (DM) are hyper-reactive and whether cangrelor, a potent intravenous P2Y(12) receptor blocker, has differential pharmacodynamic (PD) effects according DM status is unknown. The aim of this investigation was to evaluate the in vitro PD effects of cangrelor in coronary artery disease (CAD) patients with and without DM. This prospective study enrolled 120 clopidogrel-naïve patients with CAD on aspirin therapy. PD assessments using cangrelor (500 nmol/l) in vitro included vasodilator-stimulated phosphoprotein assay to obtain the P2Y(12) reactivity index (PRI), and multiple electrode aggregometry (MEA). In a 20 patients subgroup, dose-dependent response was assessed following exposure to escalating concentrations (baseline, 5, 50, 500 and 5,000 nmol/l); thrombin generation processes were evaluated by thromboelastography (TEG). PD data were evaluable in 103 patients. No differences in baseline PD parameters were observed in DM (n = 48) and non-DM (n = 45) subjects. Cangrelor reduced PRI values irrespective of DM status (p < 0.0001), yielding no difference in patients with and without DM (16.1 ± 12.3 vs. 16.8 ± 11.3; p = 0.346). All MEA values were significantly reduced, although this was of greater magnitude with purinergic compared to non-purinergic agonists. A trend analysis showed a dose-dependent effect on platelet inhibition, with no interaction due to DM status, whereas no significant dose-dependent effect was observed for TEG-derived parameters. Therefore, in vitro cangrelor provides potent and dose-dependent blockade of the platelet P2Y(12) receptor, with no differential effect in DM and non-DM patients. In addition, in vitro cangrelor exerts moderate inhibitory effects on non-purinergic platelet signaling pathways, without modulating platelet-derived thrombin generation processes.

  9. Overexpression of microRNA-95-3p suppresses brain metastasis of lung adenocarcinoma through downregulation of cyclin D1.

    PubMed

    Hwang, Su Jin; Lee, Hye Won; Kim, Hye Ree; Song, Hye Jin; Lee, Dong Heon; Lee, Hong; Shin, Chang Hoon; Joung, Je-Gun; Kim, Duk-Hwan; Joo, Kyeung Min; Kim, Hyeon Ho

    2015-08-21

    Despite great efforts to improve survival rates, the prognosis of lung cancer patients is still very poor, mainly due to high invasiveness. We developed brain metastatic PC14PE6/LvBr4 cells through intracardiac injection of lung adenocarcinoma PC14PE6 cells. Western blot and RT-qPCR analyses revealed that PC14PE6/LvBr4 cells had mesenchymal characteristics and higher invasiveness than PC14PE6 cells. We found that cyclin D1 was upregulated, miR-95-3p was inversely downregulated, and pri-miR-95 and its host gene, ABLIM2, were consistently decreased in PC14PE6/LvBr4 cells. MiR-95-3p suppressed cyclin D1 expression through direct binding to the 3' UTR of cyclin D1 mRNA and suppressed invasiveness, proliferation, and clonogenicity of PC14PE6/LvBr4 cells. Ectopic cyclin D1 reversed miR-95-3p-mediated inhibition of invasiveness and clonogenicity, demonstrating cyclin D1 downregulation is involved in function of miR-95-3p. Using bioluminescence imaging, we found that miR-95-3p suppressed orthotopic tumorigenicity and brain metastasis in vivo and increased overall survival and brain metastasis-free survival. Consistent with in vitro metastatic cells, the levels of miR-95-3p, pri-miR-95, and ABLIM2 mRNA were decreased in brain metastatic tissues compared with lung cancer tissues and higher cyclin D1 expression was involved in poor prognosis. Taken together, our results demonstrate that miR-95-3p is a potential therapeutic target for brain metastasis of lung adenocarcinoma cells.

  10. Effect of prenatal and postnatal malnutrition on intellectual functioning in early school-aged children in rural western China.

    PubMed

    Li, Chao; Zhu, Ni; Zeng, Lingxia; Dang, Shaonong; Zhou, Jing; Yan, Hong

    2016-08-01

    The aim of this study was to evaluate the effect of prenatal and postnatal malnutrition on the intellectual functioning of early school-aged children. We followed the offspring of women who had participated in a trial of prenatal supplementation with different combinations of micronutrients and who remained resident in the study field. We measured their intellectual functioning using the Wechsler intelligence scale for children (WISC-IV). Height-for-age, weight-for-age, and body mass index (BMI)-for-age were used as anthropometric nutritional status indices. Four of the 5 composite scores derived from the WISC-IV, except for working memory index (WMI), were significantly lower in low birth weight children after adjusting for confounds. All 5 composite scores, including full-scale intelligence quotient (FSIQ), verbal comprehension index (VCI), WMI, perceptual reasoning index (PRI), and processing speed index (PSI) were significant lower in stunted and underweight children. The differences in the means of WISC-IV test scores were greatest between stunted and nonstunted children. The means for FSIQ, VCI, WMI, PRI, and PSI were as follows: 5.88 (95% confidence interval [CI]: 2.84-8.92), 5.08 (95% CI: 1.12-8.41), 4.71 (95% CI: 1.78-7.66), 6.13 (95% CI: 2.83-9.44), and 5.81 (95% CI: 2.61-9.00). These means were lower in stunted children after adjusting for confounds. Our results suggest the important influences of low birth weight and postnatal malnutrition (stunting, low body weight) on intellectual functioning in early school-aged children.

  11. Comparing the effects of reflexology methods and Ibuprofen administration on dysmenorrhea in female students of Isfahan University of Medical Sciences

    PubMed Central

    Valiani, Mahboubeh; Babaei, Elaheh; Heshmat, Reza; Zare, Zahra

    2010-01-01

    BACKGROUND: Dysmenorrhea or menstrual pain is one of the most common disorders experienced by 50% of women in their reproductive age. Adverse effects of medical treatments and its failure rate of 20-25% have caused many women to seek other complementary and alternative treatment methods for primary dysmenorrhea. Hence, this study aimed to compare and determine the efficacy of reflexology and Ibuprofen on reduction of pain intensity and duration of menstrual pain. METHODS: This was a quasi-experimental clinical trial study on 68 students with primary dysmenorrhea living in Isfahan University of Medical Sciences’ dormitories. Simple random sampling was done considering the inclusion criteria and then the students were randomly divided into two groups. In the reflexology group, the subjects received 10 reflexology sessions (40 minutes each) in two consecutive mense cycles. The Ibuprofen group received Ibuprofen (400 mg), once every eight hours for 3 days during 3 consecutive mense cycles. To assess the severity of dysmenorrhea, Standard McGill Pain Questionnaire, visual analog scale (VAS) and pain rating index (PRI) were used in this study. RESULTS: Findings of the study showed that the two groups had no statistically significant difference in terms of demographic characteristics (p > 0.05). Reflexology method was associated with more reduction of intensity and duration of menstrual pain in comparison with Ibuprofen therapy. Independent and Paired t-test showed that there was a significant difference in the two groups between intensity and duration of menstrual pain using VAS and PRI in each of the 3 cycles between reflexology and Ibuprofen groups (p < 0.05). CONCLUSIONS: Considering the results of the study, reflexology was superior to Ibuprofen on reducing dysmenorrhea and its treatment effect continued even after discontinuing the intervention in the third cycle. Therefore, considering that reflexology is a non-invasive, easy and cheap technique, it seems that it

  12. Assessing the Spectral Properties of Sunlit and Shaded Components in Rice Canopies with Near-Ground Imaging Spectroscopy Data

    PubMed Central

    Zhou, Kai; Deng, Xinqiang; Yao, Xia; Tian, Yongchao; Cao, Weixing; Zhu, Yan; Ustin, Susan L.; Cheng, Tao

    2017-01-01

    Monitoring the components of crop canopies with remote sensing can help us understand the within-canopy variation in spectral properties and resolve the sources of uncertainties in the spectroscopic estimation of crop foliar chemistry. To date, the spectral properties of leaves and panicles in crop canopies and the shadow effects on their spectral variation remain poorly understood due to the insufficient spatial resolution of traditional spectroscopy data. To address this issue, we used a near-ground imaging spectroscopy system with high spatial and spectral resolutions to examine the spectral properties of rice leaves and panicles in sunlit and shaded portions of canopies and evaluate the effect of shadows on the relationships between spectral indices of leaves and foliar chlorophyll content. The results demonstrated that the shaded components exhibited lower reflectance amplitude but stronger absorption features than their sunlit counterparts. Specifically, the reflectance spectra of panicles had unique double-peak absorption features in the blue region. Among the examined vegetation indices (VIs), significant differences were found in the photochemical reflectance index (PRI) between leaves and panicles and further differences in the transformed chlorophyll absorption reflectance index (TCARI) between sunlit and shaded components. After an image-level separation of canopy components with these two indices, statistical analyses revealed much higher correlations between canopy chlorophyll content and both PRI and TCARI of shaded leaves than for those of sunlit leaves. In contrast, the red edge chlorophyll index (CIRed-edge) exhibited the strongest correlations with canopy chlorophyll content among all vegetation indices examined regardless of shadows on leaves. These findings represent significant advances in the understanding of rice leaf and panicle spectral properties under natural light conditions and demonstrate the significance of commonly overlooked shaded

  13. Jak3, STAT3, and STAT5 inhibit expression of miR-22, a novel tumor suppressor microRNA, in cutaneous T-Cell lymphoma.

    PubMed

    Sibbesen, Nina A; Kopp, Katharina L; Litvinov, Ivan V; Jønson, Lars; Willerslev-Olsen, Andreas; Fredholm, Simon; Petersen, David L; Nastasi, Claudia; Krejsgaard, Thorbjørn; Lindahl, Lise M; Gniadecki, Robert; Mongan, Nigel P; Sasseville, Denis; Wasik, Mariusz A; Iversen, Lars; Bonefeld, Charlotte M; Geisler, Carsten; Woetmann, Anders; Odum, Niels

    2015-08-21

    Aberrant activation of Janus kinase-3 (Jak3) and its key down-stream effectors, Signal Transducer and Activator of Transcription-3 (STAT3) and STAT5, is a key feature of malignant transformation in cutaneous T-cell lymphoma (CTCL). However, it remains only partially understood how Jak3/STAT activation promotes lymphomagenesis. Recently, non-coding microRNAs (miRNAs) have been implicated in the pathogenesis of this malignancy. Here, we show that (i) malignant T cells display a decreased expression of a tumor suppressor miRNA, miR-22, when compared to non-malignant T cells, (ii) STAT5 binds the promoter of the miR-22 host gene, and (iii) inhibition of Jak3, STAT3, and STAT5 triggers increased expression of pri-miR-22 and miR-22. Curcumin, a nutrient with anti-Jak3 activity and histone deacetylase inhibitors (HDACi) also trigger increased expression of pri-miR-22 and miR-22. Transfection of malignant T cells with recombinant miR-22 inhibits the expression of validated miR-22 targets including NCoA1, a transcriptional co-activator in others cancers, as well as HDAC6, MAX, MYCBP, PTEN, and CDK2, which have all been implicated in CTCL pathogenesis. In conclusion, we provide the first evidence that de-regulated Jak3/STAT3/STAT5 signalling in CTCL cells represses the expression of the gene encoding miR-22, a novel tumor suppressor miRNA.

  14. Stepwise analysis of MIR9 loci identifies miR-9-5p to be involved in Oestrogen regulated pathways in breast cancer patients

    PubMed Central

    Barbano, Raffaela; Pasculli, Barbara; Rendina, Michelina; Fontana, Andrea; Fusilli, Caterina; Copetti, Massimiliano; Castellana, Stefano; Valori, Vanna Maria; Morritti, Maria; Graziano, Paolo; Luigi, Ciuffreda; Coco, Michelina; Picardo, Francesco; Mazza, Tommaso; Evron, Ella; Murgo, Roberto; Maiello, Evaristo; Esteller, Manel; Fazio, Vito Michele; Parrella, Paola

    2017-01-01

    miR-9 was initially identified as an epigenetically regulated miRNA in tumours, but inconsistent findings have been reported so far. We analysed the expression of miR-9-5p, miR-9-3p, pri-miRs and MIR9 promoters methylation status in 131 breast cancer cases and 12 normal breast tissues (NBTs). The expression of both mature miRs was increased in tumours as compared to NBTs (P < 0.001) and negatively correlated with ER protein expression (P = 0.005 and P = 0.003, for miR-9-3p and miR-9-5p respectively). In addition, miR-9-5p showed a significant negative correlation with PgR (P = 0.002). Consistently, miR-9-5p and miR-9 3p were differentially expressed in the breast cancer subgroups identified by ER and PgR expression and HER2 amplification. No significant correlation between promoter methylation and pri-miRNAs expressions was found either in tumours or in NBTs. In the Luminal breast cancer subtype the expression of miR-9-5p was associated with a worse prognosis in both univariable and multivariable analyses. Ingenuity Pathway Analysis exploring the putative interactions among miR-9-5p/miR-9-3p, ER and PgR upstream and downstream regulators suggested a regulatory loop by which miR-9-5p but not miR-9-3p is induced by steroid hormone receptor and acts within hormone-receptor regulated pathways. PMID:28345661

  15. Effect of prenatal and postnatal malnutrition on intellectual functioning in early school-aged children in rural western China

    PubMed Central

    Li, Chao; Zhu, Ni; Zeng, Lingxia; Dang, Shaonong; Zhou, Jing; Yan, Hong

    2016-01-01

    Abstract The aim of this study was to evaluate the effect of prenatal and postnatal malnutrition on the intellectual functioning of early school-aged children. We followed the offspring of women who had participated in a trial of prenatal supplementation with different combinations of micronutrients and who remained resident in the study field. We measured their intellectual functioning using the Wechsler intelligence scale for children (WISC-IV). Height-for-age, weight-for-age, and body mass index (BMI)-for-age were used as anthropometric nutritional status indices. Four of the 5 composite scores derived from the WISC-IV, except for working memory index (WMI), were significantly lower in low birth weight children after adjusting for confounds. All 5 composite scores, including full-scale intelligence quotient (FSIQ), verbal comprehension index (VCI), WMI, perceptual reasoning index (PRI), and processing speed index (PSI) were significant lower in stunted and underweight children. The differences in the means of WISC-IV test scores were greatest between stunted and nonstunted children. The means for FSIQ, VCI, WMI, PRI, and PSI were as follows: 5.88 (95% confidence interval [CI]: 2.84–8.92), 5.08 (95% CI: 1.12–8.41), 4.71 (95% CI: 1.78–7.66), 6.13 (95% CI: 2.83–9.44), and 5.81 (95% CI: 2.61–9.00). These means were lower in stunted children after adjusting for confounds. Our results suggest the important influences of low birth weight and postnatal malnutrition (stunting, low body weight) on intellectual functioning in early school-aged children. PMID:27495020

  16. Determination of trace uranium by resonance fluorescence method coupled with photo-catalytic technology and dual cloud point extraction

    NASA Astrophysics Data System (ADS)

    Li, Jiekang; Li, Guirong; Han, Qian

    2016-12-01

    In this paper, two kinds of salophens (Sal) with different solubilities, Sal1 and Sal2, have been respectively synthesized, and they all can combine with uranyl to form stable complexes: [UO22 +-Sal1] and [UO22 +-Sal2]. Among them, [UO22 +-Sal1] was used as ligand to extract uranium in complex samples by dual cloud point extraction (dCPE), and [UO22 +-Sal2] was used as catalyst for the determination of uranium by photocatalytic resonance fluorescence (RF) method. The photocatalytic characteristic of [UO22 +-Sal2] on the oxidized pyronine Y (PRY) by potassium bromate which leads to the decrease of RF intensity of PRY were studied. The reduced value of RF intensity of reaction system (ΔF) is in proportional to the concentration of uranium (c), and a novel photo-catalytic RF method was developed for the determination of trace uranium (VI) after dCPE. The combination of photo-catalytic RF techniques and dCPE procedure endows the presented methods with enhanced sensitivity and selectivity. Under optimal conditions, the linear calibration curves range for 0.067 to 6.57 ng mL- 1, the linear regression equation was ΔF = 438.0 c (ng mL- 1) + 175.6 with the correlation coefficient r = 0.9981. The limit of detection was 0.066 ng mL- 1. The proposed method was successfully applied for the separation and determination of uranium in real samples with the recoveries of 95.0-103.5%. The mechanisms of the indicator reaction and dCPE are discussed.

  17. Gene flow on ice: the role of sea ice and whaling in shaping Holarctic genetic diversity and population differentiation in bowhead whales (Balaena mysticetus)

    PubMed Central

    Elizabeth Alter, S; Rosenbaum, Howard C; Postma, Lianne D; Whitridge, Peter; Gaines, Cork; Weber, Diana; Egan, Mary G; Lindsay, Melissa; Amato, George; Dueck, Larry; Brownell, Robert L; Heide-Jørgensen, Mads-Peter; Laidre, Kristin L; Caccone, Gisella; Hancock, Brittany L

    2012-01-01

    Sea ice is believed to be a major factor shaping gene flow for polar marine organisms, but it remains unclear to what extent it represents a true barrier to dispersal for arctic cetaceans. Bowhead whales are highly adapted to polar sea ice and were targeted by commercial whalers throughout Arctic and subarctic seas for at least four centuries, resulting in severe reductions in most areas. Both changing ice conditions and reductions due to whaling may have affected geographic distribution and genetic diversity throughout their range, but little is known about range-wide genetic structure or whether it differed in the past. This study represents the first examination of genetic diversity and differentiation across all five putative stocks, including Baffin Bay-Davis Strait, Hudson Bay-Foxe Basin, Bering-Beaufort-Chukchi, Okhotsk, and Spitsbergen. We also utilized ancient specimens from Prince Regent Inlet (PRI) in the Canadian Arctic and compared them with modern stocks. Results from analysis of molecular variance and demographic simulations are consistent with recent and high gene flow between Atlantic and Pacific stocks in the recent past. Significant genetic differences between ancient and modern populations suggest PRI harbored unique maternal lineages in the past that have been recently lost, possibly due to loss of habitat during the Little Ice Age and/or whaling. Unexpectedly, samples from this location show a closer genetic relationship with modern Pacific stocks than Atlantic, supporting high gene flow between the central Canadian Arctic and Beaufort Sea over the past millennium despite extremely heavy ice cover over much of this period. PMID:23170222

  18. E2F1-miR-20a-5p/20b-5p auto-regulatory feedback loop involved in myoblast proliferation and differentiation

    PubMed Central

    Luo, Wen; Li, Guihuan; Yi, Zhenhua; Nie, Qinghua; Zhang, Xiquan

    2016-01-01

    miR-17 family microRNAs (miRNAs) are crucial for embryo development, however, their role in muscle development is still unclear. miR-20a-5p and miR-20b-5p belong to the miR-17 family and are transcribed from the miR-17~92 and miR-106a~363 clusters respectively. In this study, we found that miR-20a-5p and miR-20b-5p promoted myoblast differentiation and repressed myoblast proliferation by directly binding the 3′ UTR of E2F transcription factor 1 (E2F1) mRNA. E2F1 is an important transcriptional factor for organism’s normal development. Overexpression of E2F1 in myoblasts promoted myoblast proliferation and inhibited myoblast differentiation. Conversely, E2F1 inhibition induced myoblast differentiation and repressed myoblast proliferation. Moreover, E2F1 can bind directly to promoters of the miR-17~92 and miR-106a~363 clusters and activate their transcription, and E2F1 protein expression is correlated with the expression of pri-miR-17~92 and pri-miR-106a~363 during myoblast differentiation. These results suggested an auto-regulatory feedback loop between E2F1 and miR-20a-5p/20b-5p, and indicated that miR-20a-5p, miR-20b-5p and E2F1 are involved in myoblast proliferation and differentiation through the auto-regulation between E2F1 and miR-20a-5p/20b-5p. These findings provide new insight into the mechanism of muscle differentiation, and further shed light on the understanding of muscle development and muscle diseases. PMID:27282946

  19. Comparison of cytotoxic and anti-platelet activities of polyphenolic extracts from Arnica montana flowers and Juglans regia husks.

    PubMed

    Rywaniak, Joanna; Luzak, Boguslawa; Podsedek, Anna; Dudzinska, Dominika; Rozalski, Marcin; Watala, Cezary

    2015-01-01

    Polyphenolic compounds of plant origin are well known to be beneficial to human health: they exert protective effects on haemostasis and have a particular influence on blood platelets. However, the anti-platelet properties of polyphenolic compounds observed so far have not been weighed against their potential cytotoxic action against platelets. The aim of this study was to demonstrate that anti-platelet and cytotoxic effects on blood platelets may interfere and therefore, may often lead to confusion when evaluating the properties of plant extracts or other agents towards blood platelets. The anti-platelet and cytotoxic in vitro effects of plant extracts obtained from the husks of walnuts (J. regia) and flowers of arnica (A. montana) on platelet reactivity and viability were examined. Platelet function was assessed using standard methods (flow cytometry: P-selectin expression, activation of GPIIbIIIa complex, vasodilator-stimulated phosphoprotein, VASP index; turbidimetric and impedance aggregometry) and newly set assays (flow cytometric monitoring of platelet cytotoxicity). The results reveal that none of the studied plant extracts demonstrated cytotoxicity towards blood platelets. The phenolic acid-rich extract of A. montana (7.5 and 15 µg/ml) significantly reduced the ADP-induced aggregation in both whole blood and PRP, and decreased the platelet reactivity index (PRI; VASP phosphorylation) in whole blood, while showing excellent antioxidant capacity. The extract of J. regia husks significantly reduced ADP-induced platelet aggregation in whole blood when applied at 7.5 µg/ml, and only slightly decreased the PRI at 15 µg/ml. Both examined extracts suppressed platelet hyper-reactivity, and such influence did not interfere with cytotoxic effects of the extracts. Thus, its high polyphenol content, excellent antioxidant capacity and distinct anti-platelet properties, in combination with its lack of toxicity, make the extract of A. montana flowers a possible

  20. Evaluations of allelopathic effect of Echinochloa colona weed on rice (Oryza sativa L. 'Vandana').

    PubMed

    Swain, D; Paroha, Seema; Singh, Monika; Subudhi, H N

    2012-09-01

    Echinochloa colona (L.) Link is a very problematic weed in up land and medium land rice causing significant reduction in yield. In the present investigation, laboratory and field experiments were conducted to evaluate the nature of interaction E. colona on germination and growth of the up land rice cultivar 'Vandana'. The effects of decomposing and decomposed aqueous leachates (1-10% w/v) obtained from the dried biomass of 20, 30, 40 and 60 days old Ecolona plants were studied on rice using petridish bioassay technique with three different types of culture media like filter paper, soil, and soil + activated charcoal. The decomposing leachates of E. colona showed strong toxic effect on root and shoot growth of rice, the highest being noted with 10% leachates of 60 days old plant residue. It inhibited root and shoot growth by 100% and 43.9% respectively as compared to control. The corresponding decomposed leachates inhibited rice germination by 90% and root and shoot growth by 70 and 25% respectively. These toxic effects of leachates showed in filter paper medium were significantly reduced in soil and soil plus activated charcoal media proving their allelopathic nature. In a field experiment, E. colona and rice were grown in proportions of 1:1, 1: 2 and 1:4, the total plant density being maintained at 100 pants m(-2). The height and dry matter of rice were adversely affected with increasing in E. colona population. From another similar field trial, data on dry matter of 20, 30, 40, and 60 days old plants were taken and their plant relative yield (PRY) and relative yield total (RYT) values were calculated. The PRY and RYT values were found to be less than unit (< 1) throughout the growth period studied which suggested the presence of severe antagonistic interspecific interaction between rice and E. colona due to allelopathy.