Initial colonization, erosion and accretion of coral substrate

NASA Astrophysics Data System (ADS)

Davies, Peter J.; Hutchings, Patricia A.

1983-08-01

Blocks cut from Porites lutea were laid on the fore reef slope, reef flat and a lagoonal patch reef at Lizard Island, in the Northern Great Barrier Reef, and replicates removed from each environment at intervals of three months over a period of one and a half years. Variations in bioeroders and bioaccretors were noted. Microfaunas are far more numerous than macrofaunas as block colonizers; the principal borers are polychaete worms, whereas encrusters are molluscs, bryozoans, serpulids and solitary corals. The reef slope is more readily colonised by microfauna pioneer communities than are the other areas. All the environments exhibit a change from cirratulids to either sabellids or spionids (polydorids) over the length of the experiment. Accretion occurred on all blocks during the experiment, with significant differences detectable between environments; both reef slope and reef flat blocks showed weight increases of 9 10% whereas blocks from the patch reef showed increases of 15%. Annual erosion rates produced by polychaete worms are 0.694 kg m-2 year-1 (reef front), 0.843 kg m-2 year-1 (reef flat) and 1.788 kg m-2 year-1 (patch reef).

Bacterial communities in Great Barrier Reef calcareous sediments: Contrasting 16S rDNA libraries from nearshore and outer shelf reefs

NASA Astrophysics Data System (ADS)

Uthicke, S.; McGuire, K.

2007-03-01

Bacterial communities in eight 16S rDNA clone libraries from calcareous sediments were investigated to provide an assessment of the bacterial diversity on sediments of the Great Barrier Reef (GBR) and to investigate differences due to decreased water quality. Sample effort was spread across two locations on each of four coral reefs, with two reefs located nearshore and two reefs on the outer shelf to allow robust statistical comparison of nearshore reefs (subjected to enhanced runoff) and outer shelf reefs (pristine conditions). Out of 221 non-chimeric sequences, 189 (85.5%) were unique and only one sequence occurred in more than one library. Rarefaction analyses and coverage calculations indicated that only a small fraction of the diversity was sampled. Cluster analyses and comparison to published sequences indicated that sequences retrieved belonged to the α, γ and δ subdivision of the Proteobacteria (6.8, 29.4 and 13.6% of the total, respectively), Cytophaga-Flavobacteria-Bacteroidetes (CFB) group (20.4%), Cyanobacteria (5.4%), Planctomycetaceae (7.7%), Verrucomicrobiaceae (6.8%), Acidobacteriaceae (2.7%). Analysis of Similarity (ANOSIM, based on grouping all retrieved sequences into 9 phylogenetic groups) indicated that subtle differences do exist in the community composition between nearshore and outer shelf reefs. Similarity percentage analysis (SIMPER) indicated that Acidobacteriaceae and Cyanobacteriaceae were the main contributors to the dissimilarity. A significant difference between bacteria on nearshore and outer shelf reefs also existed on the molecular level ( FST = 0.008, p = 0.007 for all samples, 0.006, p = 0.022 when repeated sequences within libraries were removed). Thus, bacterial communities on carbonate sediments investigated were highly diverse and differences in community composition may provide important leads for the search for indicator species or communities for water quality differences.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Saller, A.H.; Schlanger, S.O.

Two wells drilled along the margin of Enewetak Atoll penetrated approximately 1,000 m of upper eocene, Oligocene, and lower Miocene carbonates. STrontium isotope stratigraphy indicates relatively continuous deposition of carbonate from 40 Ma to 20 Ma. Depositional environments show a gradual basinward progradation of facies with slope carbonates passing upward into fore-reef, reef, back-reef, and lagoonal carbonates. Slope strata contain wackestones and packstones with submarine-cemented lithoclasts, coral, coralline algae fragments, benthic rotaline forams, planktonic forams, and echinoderm fragments. Fore-reef strata are dominantly packstones and boundstones containing large pieces of coral, abundant benthic forams, coralline algae fragments, stromatoporoids(.), and minor planktonicmore » forams. Reef and near-reef sediments include coralgal boundstones and grainstones with abundant benthic forams. Halimeda and miliolid forams are common in lagoonward parts of the back reef. Sponge borings, geopetal structures, and fractures are common in reef and fore-reef strata. Lagoonal strata are wackestones and packstones with common mollusks, coral, coralline algae, and benthic forams (rotaline and miliolid). Diagenesis has extensively altered strata near the atoll margin. Aragonite dissolution and calcite cements (radiaxial and cloudy prismatic are abundant in fore-reef, reef, and some back-reef strata). Petrographic and geochemical data indicate arogonite dissolution and calcite cementation in seawater at burial depths of 100 to 300 m. Dolomite occurs in slope and deeply buried reefal carbonates.« less

Cruise Report; RV Moana Wave cruise M1-01-GM; the bathymetry and acoustic backscatter of the mid shelf to upper slope off Panama City, Florida, northeastern Gulf of Mexico; September 3, through October 12, 2001, Panama City, FL to Panama City, FL

USGS Publications Warehouse

Gardner, James V.; Mayer, Larry A.; Hughes-Clarke, John E.; Dartnell, Peter; Sulak, Kenneth J.

2001-01-01

A zone of deep-water reefs is thought to extend from the mid and outer shelf south of Mississippi and Alabama to at least the northwestern Florida shelf off Panama City, Florida (Figure 1, 67kb). The reefs off Mississippi and Alabama are found in water depths of 60 to 120 m (Ludwick and Walton, 1957; Gardner et al., in press) and were the focus of a multibeam echosounder (MBES) mapping survey by the U.S. Geological Survey (USGS) in 2000 (Gardner et al., 2000; in press). If this deep-water-reef trend does exist along the northwestern Florida shelf, then it is critical to determine the accurate geomorphology and type of the reefs that occur because of their importance as benthic habitats for fisheries. Precisely georeferenced high-resolution mapping of bathymetry is a fundamental first step in the study of areas suspected to be critical habitats. Morphology is thought to be critical to defining the distribution of dominant demersal plankton/planktivores communities. Fish faunas of shallow hermatypic reefs have been well studied, but those of deep ahermatypic reefs have been relatively ignored. The ecology of deep-water ahermatypic reefs is fundamentally different from hermatypic reefs because autochthonous intracellular symbiotic zooxanthellae (the carbon source for hermatypic corals) do not form the base of the trophic web in ahermatypic reefs. Instead, exogenous plankton, transported to the reef by currents, serves as the primary carbon source. Thus, one of the principle uses of the morphology data will be to identify whether any reefs found are hermatypic or ahermatypic in origin. Community structure and trophodynamics of demersal fishes of the outer continental of the northeastern Gulf of Mexico presently are the focus of a major USGS reseach project. A goal of the project is to answer questions concerning the relative roles played by morphology and surficial geology in controling biological differentiation. Deep-water reefs are important because they are fish havens, key spawning sites, and are critical early larval and juvenile habitats for economically important sport/food fishes. It is known that deep-water reefs function as a key source for re-population (via seasonal and ontogenetic migration) of heavily impacted inshore reefs. The deep-water reefs south of Mississippi and Alabama support a lush fauna of ahermatypic hard corals, soft corals, black corals, sessile crinoids and sponges, that together form a living habitat for a well-developed fish fauna. The fish fauna comprises typical Caribbean reef fishes and Carolinian shelf fishes, plus epipelagic fishes, and a few deep-sea fishes. The base of the megafaunal invertebrate food web is plankton, borne by essentially continuous semi-laminar currents generated by eddies, spawned off the Loop Current, that periodically travel across the shelf edge. A few, sidescan-sonar surveys have been made of areas locally identified as Destin Pinnacles, Steamboat Lumps Marine Reserve (Koenig et al., 2000; Scanlon, et al., 2000; 2001), Twin Ridges (Briere, et al., 2000; Scanlon, et al., 2000), and Madison-Swanson Marine Reserve (Koenig et al., 2000; Scanlon, et al., 2000; 2001). However, no quantitative and little qualitative information about the geomorphology and surficial geology can be gained from these data. Existing bathymetry along the northwestern Florida shelf suggests the existence of areas of possible isolated deep-water reefs. NOAA bathymetric maps NOS NH16-9 and NG16-12 show geomorphic expressions that hint of the presence of reefs in isolated areas rather than in a continuous zone. There has been no systematic, high-resolution bathymetry collected in this area, prior to this cruise. After the successful mapping of the deep-water reefs on the Mississippi and Alabama shelf (Gardner et al., 2000; in press), a partnership composed of the USGS, Minerals Management Service, and NOAA was formed to continue the deep-reef mapping to the northwest Florida mid shelf and upper slope. This cruise is the first fruit of that partnership.

Framework of barrier reefs threatened by ocean acidification.

PubMed

Comeau, Steeve; Lantz, Coulson A; Edmunds, Peter J; Carpenter, Robert C

2016-03-01

To date, studies of ocean acidification (OA) on coral reefs have focused on organisms rather than communities, and the few community effects that have been addressed have focused on shallow back reef habitats. The effects of OA on outer barrier reefs, which are the most striking of coral reef habitats and are functionally and physically different from back reefs, are unknown. Using 5-m long outdoor flumes to create treatment conditions, we constructed coral reef communities comprised of calcified algae, corals, and reef pavement that were assembled to match the community structure at 17 m depth on the outer barrier reef of Moorea, French Polynesia. Communities were maintained under ambient and 1200 μatm pCO2 for 7 weeks, and net calcification rates were measured at different flow speeds. Community net calcification was significantly affected by OA, especially at night when net calcification was depressed ~78% compared to ambient pCO2 . Flow speed (2-14 cm s(-1) ) enhanced net calcification only at night under elevated pCO2 . Reef pavement also was affected by OA, with dissolution ~86% higher under elevated pCO2 compared to ambient pCO2 . These results suggest that net accretion of outer barrier reef communities will decline under OA conditions predicted within the next 100 years, largely because of increased dissolution of reef pavement. Such extensive dissolution poses a threat to the carbonate foundation of barrier reef communities. © 2015 John Wiley & Sons Ltd.

Adaptation to reef habitats through selection on the coral animal and its associated microbiome.

PubMed

van Oppen, Madeleine J H; Bongaerts, Pim; Frade, Pedro; Peplow, Lesa M; Boyd, Sarah E; Nim, Hieu T; Bay, Line K

2018-06-13

Spatially adjacent habitats on coral reefs can represent highly distinct environments, often harbouring different coral communities. Yet, certain coral species thrive across divergent environments. It is unknown whether the forces of selection are sufficiently strong to overcome the counteracting effects of the typically high gene flow over short distances, and for local adaptation to occur. We screened the coral genome (using restriction-site-associated sequencing [RAD-seq]), and characterized both the dinoflagellate photosymbiont and tissue-associated prokaryote microbiomes (using metabarcoding) of a reef flat and slope population of the reef-building coral, Pocillopora damicornis, at two locations on Heron Island in the southern Great Barrier Reef. Reef flat and slope populations were separated by <100 m horizontally and ~5 m vertically and the two study locations were separated by ~1 km. For the coral host, genetic divergence between habitats was much greater than between locations, suggesting limited gene flow between the flat and slope populations. Consistent with environmental selection, outlier loci primarily belonged to the conserved, minimal cellular stress response, likely reflecting adaptation to the different temperature and irradiance regimes on the reef flat and slope. Similarly, the prokaryote community differed across both habitat and, to a lesser extent, location, whereas the dinoflagellate photosymbionts differed by habitat but not location. The observed intra-specific diversity associated with divergent habitats supports that environmental adaptation involves multiple members of the coral holobiont. Adaptive alleles or microbial associations present in coral populations from the environmentally-variable reef flat may provide a source of adaptive variation for assisted evolution approaches, through assisted gene flow, artificial cross-breeding or probiotic inoculations, with the aim to increase climate resilience in the slope populations. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

Lower Mesophotic Coral Communities (60-125 m Depth) of the Northern Great Barrier Reef and Coral Sea

PubMed Central

Englebert, Norbert; Bongaerts, Pim; Muir, Paul R.; Hay, Kyra B.; Pichon, Michel; Hoegh-Guldberg, Ove

2017-01-01

Mesophotic coral ecosystems in the Indo-Pacific remain relatively unexplored, particularly at lower mesophotic depths (≥60 m), despite their potentially large spatial extent. Here, we used a remotely operated vehicle to conduct a qualitative assessment of the zooxanthellate coral community at lower mesophotic depths (60–125 m) at 10 different locations in the Great Barrier Reef Marine Park and the Coral Sea Commonwealth Marine Reserve. Lower mesophotic coral communities were present at all 10 locations, with zooxanthellate scleractinian corals extending down to ~100 metres on walls and ~125 m on steep slopes. Lower mesophotic coral communities were most diverse in the 60–80 m zone, while at depths of ≥100 m the coral community consisted almost exclusively of the genus Leptoseris. Collections of coral specimens (n = 213) between 60 and 125 m depth confirmed the presence of at least 29 different species belonging to 18 genera, including several potential new species and geographic/depth range extensions. Overall, this study highlights that lower mesophotic coral ecosystems are likely to be ubiquitous features on the outer reefs of the Great Barrier Reef and atolls of the Coral Sea, and harbour a generic and species richness of corals that is much higher than thus far reported. Further research efforts are urgently required to better understand and manage these ecosystems as part of the Great Barrier Reef Marine Park and Coral Sea Commonwealth Marine Reserve. PMID:28146574

Lower Mesophotic Coral Communities (60-125 m Depth) of the Northern Great Barrier Reef and Coral Sea.

PubMed

Englebert, Norbert; Bongaerts, Pim; Muir, Paul R; Hay, Kyra B; Pichon, Michel; Hoegh-Guldberg, Ove

2017-01-01

Mesophotic coral ecosystems in the Indo-Pacific remain relatively unexplored, particularly at lower mesophotic depths (≥60 m), despite their potentially large spatial extent. Here, we used a remotely operated vehicle to conduct a qualitative assessment of the zooxanthellate coral community at lower mesophotic depths (60-125 m) at 10 different locations in the Great Barrier Reef Marine Park and the Coral Sea Commonwealth Marine Reserve. Lower mesophotic coral communities were present at all 10 locations, with zooxanthellate scleractinian corals extending down to ~100 metres on walls and ~125 m on steep slopes. Lower mesophotic coral communities were most diverse in the 60-80 m zone, while at depths of ≥100 m the coral community consisted almost exclusively of the genus Leptoseris. Collections of coral specimens (n = 213) between 60 and 125 m depth confirmed the presence of at least 29 different species belonging to 18 genera, including several potential new species and geographic/depth range extensions. Overall, this study highlights that lower mesophotic coral ecosystems are likely to be ubiquitous features on the outer reefs of the Great Barrier Reef and atolls of the Coral Sea, and harbour a generic and species richness of corals that is much higher than thus far reported. Further research efforts are urgently required to better understand and manage these ecosystems as part of the Great Barrier Reef Marine Park and Coral Sea Commonwealth Marine Reserve.

Large submarine landslide discovered on the outer shelf and slope of the Great Barrier Reef: a local mechanism capable of generating tsunamis along the northeast Australian coastline

NASA Astrophysics Data System (ADS)

George, N.; Webster, J. M.; Beaman, R. J.; Abbey, E. A.; Davies, P. J.

2010-12-01

We have discovered a large, submarine landslide on the shelf edge of the central Great Barrier Reef, Australia, 10 km from the modern reef. Due to the large size and shallow emplacement depth of the “Viper” slide deposit, it has significantly influenced the geomorphology of the continental shelf and upper slope, allowed the mass movement of large volumes of coral reef limestones and unconsolidated sediments from the shelf edge to the upper slope and likely caused a tsunami capable of reaching the Australian coastline. In this presentation we analyse high-resolution multibeam, seismic and dredge data collected on the RV Southern Survey (SS07), investigate the nature of the slide scar and deposit and discuss the origin and tsunamigenic potential of this event. The Great Barrier Reef (GBR), a World Heritage Area, has been the focus of a wide body of research aiming to understand the development of this unique, diverse and large coral reef system. This study is the first to document a landslide on the shelf edge of the GBR. Submarine landslides have been known to dramatically change ocean topography, destroy underwater infrastructure and cause devastating tsunamis. The systematic study of this landslide has allowed detailed classification of surface and subsurface features to gain an understanding of the mechanics and volume of the mass movement. In addition, samples taken from the slide were classified and dated. The results, revealed a debris avalanche on the shelf edge, 7 kms wide and 6 kms from head to toe, at depths between 70 and 230 m. Three adjacent, successive, landslides occurred almost simultaneously creating a total movement of 5.9x105 m3 of material. Limestone rock and coral reef structures from the shelf edge were transported and deposited onto the finer sediment of the upper slope. A progression of larger blocks of sizes up to 16,300 m2 and 17 m high, to fine sediment the farther away from the escarpments is apparent. Dating of coralline algal-dominated limestones dredged from 163 m below present sea level from the center and top of the landslide debris showed that the landslide occurred at least 15,000 years ago. The shape of the landslide deposit, the distribution of debris as well as the distance the slide traveled suggest a submarine event that would have happened at an earlier date during a sea level high stand. No other mass movement has occurred in the area since. Calculations using the Ward and Day (2003) formula based on the deposit thickness and area suggest that the landslide would have created a tsunami with a run up of 1 m on the northeast Australian coastline. Therefore, in addition to the more regional subduction-driven tsunamis generated in the Pacific (e.g., 2007 Solomon Islands event) our discovery highlights an important new local mechanism - the catastrophic collapse of the GBR shelf edge - that can (1) drastically alter the morphology of the margin and (2) generate tsunamis capable of impacting the coastline.

Elevated land runoff after European settlement perturbs persistent foraminiferal assemblages on the Great Barrier Reef.

PubMed

Uthicke, S; Patel, F; Ditchburn, R

2012-01-01

Coral reefs are under pressure from a variety of human-induced disturbances, but demonstration of ecosystem changes and identification of stressors are often difficult. We tested whether global change or increased agricultural runoff after European settlement of Northeast Australia (ca. 1860) has affected inshore reefs of the Great Barrier Reef. Eleven sediment cores were retrieved from inner reefs, intermediate reefs, and outer-island reefs, and benthic foraminiferal assemblages were analyzed in dated (14C, 210Pb, 137Cs) core sections (N = 82 samples). Data were grouped into six age bands (< 55, 55-150, 150-500, 500-1000, 1000-1500, and > 1500 yr). Principal component analysis and two-factor (Zone and Age) permutational analysis of variance (PERMANOVA) suggested that assemblages from the three zones were significantly different from each other over several millennia, with symbiont-bearing (mixotrophic) species dominating the outer reefs. A significant interaction term indicated that within-zone patterns varied. Assemblages in outer reefs unaffected from increased land runoff were persistent until present times. In both other zones, assemblages were also persistent until 150 yr ago, suggesting that benthic foraminiferal assemblages are naturally highly persistent over long (> 2000 yr) timescales. Assemblages in core sections < 55 yr old from inner reefs were significantly (post hoc t test) different from those older than 150 yr. Similarly, assemblages < 55 yr old from intermediate reefs were significantly different compared to older assemblages. A multivariate regression tree (environmental variables: Zone and Age) explained 56.8% of the variance in foraminiferal assemblages and confirmed patterns identified by PERMANOVA. With some exceptions, changes on the inner and intermediate reefs were consistent with a model predicting that increased nutrients and higher turbidity enhance relative abundance of heterotrophic species. Given that assemblages did not change in outer-island reefs (not impacted by runoff) we argue that changes in assemblages due to global change can be rejected as an explanation. Thus, the findings are more consistent with the hypothesis that agricultural runoff since European settlement altered foraminiferal assemblages than with the hypothesis that global forcing caused changes.

Impacts and recovery from severe tropical cyclone Yasi on the Great Barrier Reef.

PubMed

Beeden, Roger; Maynard, Jeffrey; Puotinen, Marjetta; Marshall, Paul; Dryden, Jen; Goldberg, Jeremy; Williams, Gareth

2015-01-01

Full recovery of coral reefs from tropical cyclone (TC) damage can take decades, making cyclones a major driver of habitat condition where they occur regularly. Since 1985, 44 TCs generated gale force winds (≥17 metres/second) within the Great Barrier Reef Marine Park (GBRMP). Of the hurricane strength TCs (≥H1-Saffir Simpson scale; ≥ category 3 Australian scale), TC Yasi (February, 2011) was the largest. In the weeks after TC Yasi crossed the GBRMP, participating researchers, managers and rangers assessed the extent and severity of reef damage via 841 Reef Health and Impact Surveys at 70 reefs. Records were scaled into five damage levels representing increasingly widespread colony-level damage (1, 2, 3) and reef structural damage (4, 5). Average damage severity was significantly affected by direction (north vs south of the cyclone track), reef shelf position (mid-shelf vs outer-shelf) and habitat type. More outer-shelf reefs suffered structural damage than mid-shelf reefs within 150 km of the track. Structural damage spanned a greater latitudinal range for mid-shelf reefs than outer-shelf reefs (400 vs 300 km). Structural damage was patchily distributed at all distances, but more so as distance from the track increased. Damage extended much further from the track than during other recent intense cyclones that had smaller circulation sizes. Just over 15% (3,834 km2) of the total reef area of the GBRMP is estimated to have sustained some level of coral damage, with ~4% (949 km2) sustaining a degree of structural damage. TC Yasi likely caused the greatest loss of coral cover on the GBR in a 24-hour period since 1985. Severely impacted reefs have started to recover; coral cover increased an average of 4% between 2011 and 2013 at re-surveyed reefs. The in situ assessment of impacts described here is the largest in scale ever conducted on the Great Barrier Reef following a reef health disturbance.

Impacts and Recovery from Severe Tropical Cyclone Yasi on the Great Barrier Reef

PubMed Central

Beeden, Roger; Maynard, Jeffrey; Puotinen, Marjetta; Marshall, Paul; Dryden, Jen; Goldberg, Jeremy; Williams, Gareth

2015-01-01

Full recovery of coral reefs from tropical cyclone (TC) damage can take decades, making cyclones a major driver of habitat condition where they occur regularly. Since 1985, 44 TCs generated gale force winds (≥17 metres/second) within the Great Barrier Reef Marine Park (GBRMP). Of the hurricane strength TCs (≥H1—Saffir Simpson scale; ≥ category 3 Australian scale), TC Yasi (February, 2011) was the largest. In the weeks after TC Yasi crossed the GBRMP, participating researchers, managers and rangers assessed the extent and severity of reef damage via 841 Reef Health and Impact Surveys at 70 reefs. Records were scaled into five damage levels representing increasingly widespread colony-level damage (1, 2, 3) and reef structural damage (4, 5). Average damage severity was significantly affected by direction (north vs south of the cyclone track), reef shelf position (mid-shelf vs outer-shelf) and habitat type. More outer-shelf reefs suffered structural damage than mid-shelf reefs within 150 km of the track. Structural damage spanned a greater latitudinal range for mid-shelf reefs than outer-shelf reefs (400 vs 300 km). Structural damage was patchily distributed at all distances, but more so as distance from the track increased. Damage extended much further from the track than during other recent intense cyclones that had smaller circulation sizes. Just over 15% (3,834 km2) of the total reef area of the GBRMP is estimated to have sustained some level of coral damage, with ~4% (949 km2) sustaining a degree of structural damage. TC Yasi likely caused the greatest loss of coral cover on the GBR in a 24-hour period since 1985. Severely impacted reefs have started to recover; coral cover increased an average of 4% between 2011 and 2013 at re-surveyed reefs. The in situ assessment of impacts described here is the largest in scale ever conducted on the Great Barrier Reef following a reef health disturbance. PMID:25874718

Physical connectivity between Pulley Ridge and Dry Tortugas coral reefs under the influence of the Loop Current/Florida Current system

NASA Astrophysics Data System (ADS)

Kourafalou, V. H.; Androulidakis, Y. S.; Kang, H.; Smith, R. H.; Valle-Levinson, A.

2018-07-01

The Pulley Ridge and Dry Tortugas coral reefs are among the most pristine, but also fragile, marine ecosystems of the continental United States. Understanding connectivity processes between them and with surrounding shelf and deep areas is fundamental for their management. This study focuses on the physical processes related to the connectivity of these reefs. Unprecedented in situ time series were used at these specific reef locations, together with satellite observations and numerical simulations, to investigate the dynamics controlling local circulation on the Southwestern Florida Shelf (SWFS) under oceanic influence. The approach of the Loop Current and Florida Current (LC/FC) system to the SWFS slope can induce 0.5 to 1 m/s offshore flows impacting the Pulley Ridge and Dry Tortugas reefs. On the other hand, when the LC/FC system retreats from the slope, onshore flows can carry open-sea waters over the coral reefs. Local formation of cyclonic eddies is possible near the Dry Tortugas reefs in the LC approach case and passage of upstream LC Frontal Eddies is possible in the LC retreat case. Offshore currents ∼1 m/s over the SWFS slope were also found during periods of anticyclonic LC Eddy separation. A novel finding is the shedding and northward propagation of mesoscale anticyclonic eddies from the core of the LC along the West Florida Shelf. Eddy shedding may have a broader effect on the dynamics of the shelf around the study reef areas. Long periods of LC/FC domination over these coral reefs (reaching several weeks to months) are characterized by strong (∼1 m/s) along-shelf currents and continuous upwelling processes, which may weaken the slope stratification and bring colder, deeper waters over the shelf-break and toward the shallower shelf region.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Saller, A.H.; Schlanger, S.O.

Two wells drilled along the margin of Enewetak Atoll penetrated approximately 1000 m of upper Eocene, Oligocene, and lower Miocene carbonates. Strontium isotope stratigraphy indicates relatively continuous deposition of carbonate from 40 Ma to 20 Ma. Depositional environments show a gradual basinward progradation of facies with slope carbonates passing upward into fore-reef, reef, back-reef, and lagoonal carbonates. Slope strata contain wackestones and packstones with submarine-cemented lithoclasts, coral, coralline algae fragments, benthic rotaline forams, planktonic forams, and echinoderm fragments. Fore-reef strata are dominantly packstones and boundstones containing large pieces of coral, abundant benthic forams, coralline algae fragments, stromatoporoids( ), and minormore » planktonic forams. Reef and near-reef sediments include coralgal boundstones and grainstones with abundant benthic forams. Halimeda and miliolid forams are common in lagoonward parts of the back reef. Sponge borings, geopetal structures, and fractures are common in reef and fore-reef strata. Lagoonal strata are wackestones and packstones with common mollusks, coral, coralline algae, and benthic forams (rotaline and miliolid). Diagenesis has extensively altered strata near the atoll margin. Aragonite dissolution and calcite cements (radiaxial and cloudy prismatic) are abundant in fore-reef, reef, and some back-reef strata. Petrographic and geochemical data indicate aragonite dissolution and calcite cementation in seawater at burial depths of 100 to 300 m. Dolomite occurs in slope and deeply buried reefal carbonates. Most dolomitization occurred at burial depths of more than 1000 m in cool marine waters circulating through the atoll. lagoonal strata are not significantly altered by marine diagenesis and still contain abundant primary aragonite and magnesium calcite.« less

Strategies of dissolved inorganic carbon use in macroalgae across a gradient of terrestrial influence: implications for the Great Barrier Reef in the context of ocean acidification

NASA Astrophysics Data System (ADS)

Diaz-Pulido, Guillermo; Cornwall, Christopher; Gartrell, Patrick; Hurd, Catriona; Tran, Dien V.

2016-12-01

Macroalgae are generally used as indicators of coral reef status; thus, understanding the drivers and mechanisms leading to increased macroalgal abundance are of critical importance. Ocean acidification (OA) due to elevated carbon dioxide (CO2) concentrations has been suggested to stimulate macroalgal growth and abundance on reefs. However, little is known about the physiological mechanisms by which reef macroalgae use CO2 from the bulk seawater for photosynthesis [i.e., (1) direct uptake of bicarbonate (HCO3 -) and/or CO2 by means of carbon concentrating mechanisms (CCM) and (2) the diffusive uptake of CO2], which species could benefit from increased CO2 or which habitats may be more susceptible to acidification-induced algal proliferations. Here, we provide the first quantitative examination of CO2-use strategies in coral reef macroalgae and provide information on how the proportion of species and the proportional abundance of species utilising each of the carbon acquisition strategies varies across a gradient of terrestrial influence (from inshore to offshore reefs) in the Great Barrier Reef (GBR). Four macroalgal groups were identified based on their carbon uptake strategies: (1) CCM-only (HCO3 - only users); (2) CCM-HCO3 -/CO2 (active uptake HCO3 - and/or CO2 use); (3) Non-CCM species (those relying on diffusive CO2 uptake); and (4) Calcifiers. δ13C values of macroalgae, confirmed by pH drift assays, show that diffusive CO2 use is more prevalent in deeper waters, possibly due to low light availability that limits activity of CCMs. Inshore shallow reefs had a higher proportion of CCM-only species, while reefs further away from terrestrial influence and exposed to better water quality had a higher number of non-CCM species than inshore and mid-shelf reefs. As non-CCM macroalgae are more responsive to increased seawater CO2 and OA, reef slopes of the outer reefs are probably the habitats most vulnerable to the impacts of OA. Our results suggest a potentially important role of carbon physiology in structuring macroalgal communities in the GBR.

Environmental Influences on Patterns of Vertical Movement and Site Fidelity of Grey Reef Sharks (Carcharhinus amblyrhynchos) at Aggregation Sites

PubMed Central

Vianna, Gabriel M. S.; Meekan, Mark G.; Meeuwig, Jessica J.; Speed, Conrad W.

2013-01-01

We used acoustic telemetry to describe the patterns of vertical movement, site fidelity and residency of grey reef sharks (Carcharhinus amblyrhynchos) on the outer slope of coral reefs in Palau, Micronesia, over a period of two years and nine months. We tagged 39 sharks (mostly adult females) of which 31 were detected regularly throughout the study. Sharks displayed strong inter-annual residency with greater attendance at monitored sites during summer than winter months. More individuals were detected during the day than at night. Mean depths of tagged sharks increased from 35 m in winter to 60 m in spring following an increase in water temperature at 60 m, with maximum mean depths attained when water temperatures at 60 m stabilised around 29°C. Sharks descended to greater depths and used a wider range of depths around the time of the full moon. There were also crepuscular cycles in mean depth, with sharks moving into shallower waters at dawn and dusk each day. We suggest that daily, lunar and seasonal cycles in vertical movement and residency are strategies for optimising both energetic budgets and foraging behaviour. Cyclical patterns of movement in response to environmental variables might affect the susceptibility of reef sharks to fishing, a consideration that should be taken into account in the implementation of conservation strategies. PMID:23593193

Environmental influences on patterns of vertical movement and site fidelity of grey reef sharks (Carcharhinus amblyrhynchos) at aggregation sites.

PubMed

Vianna, Gabriel M S; Meekan, Mark G; Meeuwig, Jessica J; Speed, Conrad W

2013-01-01

We used acoustic telemetry to describe the patterns of vertical movement, site fidelity and residency of grey reef sharks (Carcharhinus amblyrhynchos) on the outer slope of coral reefs in Palau, Micronesia, over a period of two years and nine months. We tagged 39 sharks (mostly adult females) of which 31 were detected regularly throughout the study. Sharks displayed strong inter-annual residency with greater attendance at monitored sites during summer than winter months. More individuals were detected during the day than at night. Mean depths of tagged sharks increased from 35 m in winter to 60 m in spring following an increase in water temperature at 60 m, with maximum mean depths attained when water temperatures at 60 m stabilised around 29°C. Sharks descended to greater depths and used a wider range of depths around the time of the full moon. There were also crepuscular cycles in mean depth, with sharks moving into shallower waters at dawn and dusk each day. We suggest that daily, lunar and seasonal cycles in vertical movement and residency are strategies for optimising both energetic budgets and foraging behaviour. Cyclical patterns of movement in response to environmental variables might affect the susceptibility of reef sharks to fishing, a consideration that should be taken into account in the implementation of conservation strategies.

The Açu Reef morphology, distribution, and inter reef sedimentation on the outer shelf of the NE Brazil equatorial margin

NASA Astrophysics Data System (ADS)

do Nascimento Silva, Luzia Liniane; Gomes, Moab Praxedes; Vital, Helenice

2018-05-01

Submerged reefs, referred to as the Açu Reefs, have been newly observed on both sides of the Açu Incised Valley on the northeastern equatorial Brazilian outer shelf. This study aims to understand the roles of shelf physiography, its antecedent morphologies, and its inter reef sedimentation on the different development stages of the biogenic reef during last deglacial sea-level rise. The data sets consist of side-scan sonar imagery, one sparker seismic profile, 76 sediment samples, and underwater photography. Seven backscatter patterns (P1 to P7) were identified and associated with eleven sedimentary carbonate and siliciclastic facies. The inherited relief, the mouth of the paleo incised valley, and the interreef sediment distribution play major controls on the deglacial reef evolution. The reefs occur in a depth-limited 25-55 m water depth range and in a 6 km wide narrow zone of the outer shelf. The reefs crop out in a surface area over 100 km2 and occur as a series of NW-SE preferentially orientated ridges composed of three parallel ridge sets at 45, 35, and 25 m of water depth. The reefs form a series of individual, roughly linear ridges, tens of km in length, acting as barriers in addition to scattered reef mounds or knolls, averaging 4 m in height and grouped in small patches and aggregates. The reefs, currently limited at the transition between the photic and mesophotic zones, are thinly covered by red algae and scattered coral heads and sponges. Taking into account the established sea-level curves from the equatorial Brazilian northeastern shelf / Rochas Atoll and Barbados, the shelf physiography, and the shallow bedrock, the optimal conditions for reef development had to occur during a time interval (11-9 kyr BP) characterized by a slowdown of the outer shelf flooding, immediately following Meltwater Pulse-1B. This 2 kyr short interval provided unique conditions for remarkable reef backstepping into distinct parallel ridge sets. Furthermore, the Açu Reefs have trapped relict siliciclastic sediments within the three sets of reefs, west of the Açu Incised Valley and adjacent coasts. Lines evidence of easterly nearshore currents carried sediments from the old Açu Incised Valley and adjacent coasts. These incipiently drowned reefs influence the water circulation patterns of the modern shelf system, its carbonate sedimentation, and sediment transport. This study provides a new example of reef occurrence which might be more commonly observed on similar equatorial continental shelves.

Chemical defense and chemical variation in some tropical Pacific species of Halimeda (Halimedaceae; Chlorophyta)

NASA Astrophysics Data System (ADS)

Paul, Valerie J.; van Alstyne, Kathryn L.

1988-03-01

Over a dozen species of the genus Halimeda have been chemically investigated and found to produce the diterpenoid metabolites halimedatrial (1) and halimedatetraacetate (2) in varying concentrations. These meabolites have been proposed to play a role in chemical defense against herbivores based on their chemical structures and their demonstrated biological activities in laboratory and aquarium assays. We examined and compared the feeding deterrent effects of these two compounds tovard herbivorous fishes in field experiments on Guam reefs. Halimedatrial is a more effective feeding deterrent than halimedatetraacetate. It is the major secondary metabolite in young Halimeda macroloba and in the newly produced segments of growing plants. The organic extracts from young plants and new segments were significantly more deterrent than extracts from mature plant tissue. Some populations of Halimeda growing in reef-slope habitats, where herbivory is intense, also have high concentrations of halimedatrial. We compared extracts between reef slope and reef flat collections of Halimeda opuntia on Guam and Pohnpei (= Ponape), and H. discoidea and H. macroloba on Guam. We found that halimedtrial was the major metabolite in reef-slope collections of H. opuntia from Pohnpei and Pago Bay, Guam, and that halimedatetraacetate was the major metabolite a non-reef slope populations. In the cases examined, chemical defenses were greatest in (1) plant parts and (2) populations that were at greatest risk to herbivores.

An annotated list of fish parasites (Isopoda, Copepoda, Monogenea, Digenea, Cestoda, Nematoda) collected from Snappers and Bream (Lutjanidae, Nemipteridae, Caesionidae) in New Caledonia confirms high parasite biodiversity on coral reef fish

PubMed Central

2012-01-01

Background Coral reefs are areas of maximum biodiversity, but the parasites of coral reef fishes, and especially their species richness, are not well known. Over an 8-year period, parasites were collected from 24 species of Lutjanidae, Nemipteridae and Caesionidae off New Caledonia, South Pacific. Results Host-parasite and parasite-host lists are provided, with a total of 207 host-parasite combinations and 58 parasite species identified at the species level, with 27 new host records. Results are presented for isopods, copepods, monogeneans, digeneans, cestodes and nematodes. When results are restricted to well-sampled reef fish species (sample size > 30), the number of host-parasite combinations is 20–25 per fish species, and the number of parasites identified at the species level is 9–13 per fish species. Lutjanids include reef-associated fish and deeper sea fish from the outer slopes of the coral reef: fish from both milieus were compared. Surprisingly, parasite biodiversity was higher in deeper sea fish than in reef fish (host-parasite combinations: 12.50 vs 10.13, number of species per fish 3.75 vs 3.00); however, we identified four biases which diminish the validity of this comparison. Finally, these results and previously published results allow us to propose a generalization of parasite biodiversity for four major families of reef-associated fishes (Lutjanidae, Nemipteridae, Serranidae and Lethrinidae): well-sampled fish have a mean of 20 host-parasite combinations per fish species, and the number of parasites identified at the species level is 10 per fish species. Conclusions Since all precautions have been taken to minimize taxon numbers, it is safe to affirm than the number of fish parasites is at least ten times the number of fish species in coral reefs, for species of similar size or larger than the species in the four families studied; this is a major improvement to our estimate of biodiversity in coral reefs. Our results suggest that extinction of a coral reef fish species would eventually result in the coextinction of at least ten species of parasites. PMID:22947621

An annotated list of fish parasites (Isopoda, Copepoda, Monogenea, Digenea, Cestoda, Nematoda) collected from Snappers and Bream (Lutjanidae, Nemipteridae, Caesionidae) in New Caledonia confirms high parasite biodiversity on coral reef fish.

PubMed

Justine, Jean-Lou; Beveridge, Ian; Boxshall, Geoffrey A; Bray, Rodney A; Miller, Terrence L; Moravec, František; Trilles, Jean-Paul; Whittington, Ian D

2012-09-04

Coral reefs are areas of maximum biodiversity, but the parasites of coral reef fishes, and especially their species richness, are not well known. Over an 8-year period, parasites were collected from 24 species of Lutjanidae, Nemipteridae and Caesionidae off New Caledonia, South Pacific. Host-parasite and parasite-host lists are provided, with a total of 207 host-parasite combinations and 58 parasite species identified at the species level, with 27 new host records. Results are presented for isopods, copepods, monogeneans, digeneans, cestodes and nematodes. When results are restricted to well-sampled reef fish species (sample size > 30), the number of host-parasite combinations is 20-25 per fish species, and the number of parasites identified at the species level is 9-13 per fish species. Lutjanids include reef-associated fish and deeper sea fish from the outer slopes of the coral reef: fish from both milieus were compared. Surprisingly, parasite biodiversity was higher in deeper sea fish than in reef fish (host-parasite combinations: 12.50 vs 10.13, number of species per fish 3.75 vs 3.00); however, we identified four biases which diminish the validity of this comparison. Finally, these results and previously published results allow us to propose a generalization of parasite biodiversity for four major families of reef-associated fishes (Lutjanidae, Nemipteridae, Serranidae and Lethrinidae): well-sampled fish have a mean of 20 host-parasite combinations per fish species, and the number of parasites identified at the species level is 10 per fish species. Since all precautions have been taken to minimize taxon numbers, it is safe to affirm than the number of fish parasites is at least ten times the number of fish species in coral reefs, for species of similar size or larger than the species in the four families studied; this is a major improvement to our estimate of biodiversity in coral reefs. Our results suggest that extinction of a coral reef fish species would eventually result in the coextinction of at least ten species of parasites.

Coral distribution patterns in Miocene Reefs of Anguilla, Leeward Islands, West Indies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Foster, A.B.; Johnson, K.G.

1988-01-01

Anguilla, a 27 by 5 km island at 18/sup 0/13'N, 63/sup 0/05'W, parallels the northwest edge of the Anguilla bank (St. Martin plateau) in the outer lesser Angilles volcanic arc, which was active from the Eocene to Oligocene. Except for scattered exposures of tuff or basalt, the island is composed predominantly of reefal limestones and marls of the 70-m thick, middle Miocene Anguilla Formation, deposited on a shallow inner shelf platform extending from volcanoes near St. Martin. The reef framework consists of branched and platy corals interspersed with calcareous sand lenses. Although the limestones have been uplifted and subjected tomore » minor faulting, little evidence supports extensive transport across a slope. Coral distribution patterns have been quantified across the reefal units by point-counting species occurrences at 0.16-m intervals within 1-m/sup 2/ quadrants placed haphazardly across vertical exposures. Eight coral species (of possibly 18 total) were recorded. Cluster analysis delineated four facies: (1) a low-diversity facies dominated by branched Porites, (2) an intermediate diversity facies dominated by branched Porites, (3) a high-diversity facies dominated by massive Montastraea, Siderastrea, and Porites, and (4) an intermediate diversity facies dominated by platy Porites. These facies consists of lenses, no more than 100 m long and 2 m high, arranged in no apparent regular sequence. Thus, they do not represent zones across a depth gradient. Comparisons with living Caribbean reefs suggests that the Anguilla Miocene reefs were similar to small, modern, backreef fringing and patch reefs near the San Blas Islands of Panama, reefs whose variable composition and patchy distribution depend largely on sedimentation and current patterns.« less

A global baseline for spawning aggregations of reef fishes.

PubMed

Sadovy De Mitcheson, Yvonne; Cornish, Andrew; Domeier, Michael; Colin, Patrick L; Russell, Martin; Lindeman, Kenyon C

2008-10-01

Species that periodically and predictably congregate on land or in the sea can be extremely vulnerable to overexploitation. Many coral reef fishes form spawning aggregations that are increasingly the target of fishing. Although serious declines are well known for a few species, the extent of this behavior among fishes and the impacts of aggregation fishing are not appreciated widely. To profile aggregating species globally, establish a baseline for future work, and strengthen the case for protection, we (as members of the Society for the Conservation of Reef Fish Aggregations) developed a global database on the occurrence, history, and management of spawning aggregations. We complemented the database with information from interviews with over 300 fishers in Asia and the western Pacific. Sixty-seven species, mainly commercial, in 9 families aggregate to spawn in the 29 countries or territories considered in the database. Ninety percent of aggregation records were from reef pass channels, promontories, and outer reef-slope drop-offs. Multispecies aggregation sites were common, and spawning seasons of most species typically lasted <3 months. The best-documented species in the database, the Nassau grouper (Epinephelus striatus), has undergone substantial declines in aggregations throughout its range and is now considered threatened. Our findings have important conservation and management implications for aggregating species given that exploitation pressures on them are increasing, there is little effective management, and 79% of those aggregations sufficiently well documented were reported to be in decline. Nonetheless, a few success stories demonstrate the benefits of aggregation management. A major shift in perspective on spawning aggregations of reef fish, from being seen as opportunities for exploitation to acknowledging them as important life-history phenomena in need of management, is urgently needed.

New constraints on the spatial distribution and morphology of the Halimeda bioherms of the Great Barrier Reef, Australia

NASA Astrophysics Data System (ADS)

McNeil, Mardi A.; Webster, Jody M.; Beaman, Robin J.; Graham, Trevor L.

2016-12-01

Halimeda bioherms occur as extensive geological structures on the northern Great Barrier Reef (GBR), Australia. We present the most complete, high-resolution spatial mapping of the northern GBR Halimeda bioherms, based on new airborne lidar and multibeam echosounder bathymetry data. Our analysis reveals that bioherm morphology does not conform to the previous model of parallel ridges and troughs, but is far more complex than previously thought. We define and describe three morphological sub-types: reticulate, annulate, and undulate, which are distributed in a cross-shelf pattern of reduced complexity from east to west. The northern GBR bioherms cover an area of 6095 km2, three times larger than the original estimate, exceeding the area and volume of calcium carbonate in the adjacent modern shelf-edge barrier reefs. We have mapped a 1740 km2 bioherm complex north of Raine Island in the Cape York region not previously recorded, extending the northern limit by more than 1° of latitude. Bioherm formation and distribution are controlled by a complex interaction of outer-shelf geometry, regional and local currents, coupled with the morphology and depth of continental slope submarine canyons determining the delivery of cool, nutrient-rich water upwelling through inter-reef passages. Distribution and mapping of Halimeda bioherms in relation to Great Barrier Reef Marine Park Authority bioregion classifications and management zones are inconsistent and currently poorly defined due to a lack of high-resolution data not available until now. These new estimates of bioherm spatial distribution and morphology have implications for understanding the role these geological features play as structurally complex and productive inter-reef habitats, and as calcium carbonate sinks which record a complete history of the Holocene post-glacial marine transgression in the northern GBR.

Dynamics of internal waves on the Southeast Florida shelf: Implications for cross-shelf exchange and turbulent mixing on a barrier reef system

NASA Astrophysics Data System (ADS)

Davis, Kristen Alexis

The dynamics of internal waves shoaling on the Southeast Florida shelf and the resulting stratified turbulence in the shelf bottom boundary layer are investigated using observational studies completed during the summers of 2003-2005. This work is driven by a desire to understand the effects of internal wave-driven flow and the shoreward transport of cool, nutrient-rich water masses on cross-shelf exchange, vertical mixing, and mass transfer to benthic reef organisms. Shelf sea internal wave fields are typically highly variable and dominated by wind and tidal forces. However, this is not necessarily true for outer shelf regions or very narrow shelves where remote physical processes originating over the slope or deep ocean may exert a strong influence on the internal wave climate. During the summers of 2003 and 2004 observational studies were conducted to examine the effects of a western boundary current (the Florida Current), tides, and wind on the mean currents and internal wave field on the outer Southeast Florida shelf. We present evidence that suggests that the Florida Current plays as large a role in the determination of the high frequency internal wave field as tidal forces. These observations and analyses show that it is necessary to include the forcing from the Florida Current meanders and instabilities in order to predict accurately the episodic nature of the internal wave field on the Southeast Florida shelf. Deep ocean and continental shelf processes intersect at the shelf edge and influence the exchange of water masses and their associated characteristics including heat, nutrients, sediment, and larvae across the shelf. Thus, the dynamics of cross-shelf circulation have important consequences for organisms living on the shelf. In the second phase of this work, we investigate physical mechanisms controlling the exchange of water masses during the summer season across the Southeast Florida shelf. A time series of cross-shelf transport from May to August 2003 suggests that, during the summer months, instabilities in the Florida Current and nonlinear internal waves are the primary mechanisms driving cross-shelf transport on the outer shelf Surface tide, wind, and wave-driven transport were found to be small in comparison. Additionally, this data set highlights the importance of baroclinic processes to cross-shelf transport in this region. In the last phase of my research, I sought to investigate how boundary layer dynamics over a rough coral bed were modified by shoaling internal waves and to understand the implications for mixing and mass transfer to the bed. Results are presented from an observational study of the turbulent bottom boundary layer on the outer Southeast Florida shelf in July and August 2005. Turbulence in the reef bottom boundary layer is highly variable in time and is modified by near bed flow, shear, and stratification driven by shoaling internal waves. We examined turbulence in the bottom boundary layer during a typical internal wave event and found that in addition to the episodic onshore transport of cool, subthermocline water masses, with elevated nutrient concentrations, bottom-intensified currents from shoaling internal waves can increase turbulent dissipation and mixing in the reef bottom boundary layer. Additionally, we show that estimates of flux Richardson number, calculated directly from measurements of dissipation and buoyancy flux, support the dependence of R f on turbulent intensity, epsilon/nuN 2, a relationship that has only been previously shown in laboratory and numerical work. While the importance of surface gravity waves in generating turbulent mixing and controlling mass transfer on coral reefs has been well documented in the literature, this work represents the first time the appropriate field data have been collected for a detailed dynamic analysis of the physical effects and biological implications of internal waves on reef ecosystems. Results from these studies suggest that for reef communities exposed to continental shelf and slope processes, internal waves may play an important role in cross-shelf transport and mass transfer to benthic organisms and may be essential to modeling key biological processes, the connectivity of coral populations, or designing and managing marine reserves and fisheries.

Bathymetric distribution of foraminifera in Jamaican reef environments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martin, R.E.; Liddell, W.D.

1985-02-01

Recent foraminifera inhabiting Jamaican north-coast fringing reefs display variations in distributional patterns that are related to bathymetry and reef morphology. Sediment samples containing foraminifera were collected along a profile that traversed the back reef (depth 1-2 m), fore-reef terrace (3-15 m), fore-reef escarpment (15-27 m), fore-reef slope (30-55 m), and upper deep fore reef (70 m). Approximately 150 species distributed among 80 genera were identified from the samples. Preliminary analyses indicate that diversity values (S, H') are lowest on the fore-reef terrace (79, 3.0, respectively), increase similarly in back-reef and fore-reef escarpment and slope settings (93, 3.4), and are highestmore » on the deep fore reef (109, 3.7). Larger groupings (suborders) exhibit distinct bathymetric trends with miliolids occurring more commonly in back-reef (comprising 51% of the fauna) than in fore-reef (28%) zones, whereas agglutinated and planktonic species occur more commonly in deeper reef (> 15 m, 9% and 4%, respectively) than in shallower reef zones (< 15 m, 3%, and 0.5%, respectively). Among the more common species Amphistegina gibbosa (Rotolina) is much more abundant in fore-reef (3%) environments, and Sorites marginalis (Miliolina) occurs almost exclusively in the back reef, where it comprises 5.5% of the fauna. Q-mode cluster analysis, involving all species collected, enabled the delineation of back-reef, shallow fore-reef, and deeper fore-reef biofacies, also indicating the potential utility of foraminiferal distributions in detailed paleoenvironment interpretations of ancient reef settings.« less

Algal Turf Sediments and Sediment Production by Parrotfishes across the Continental Shelf of the Northern Great Barrier Reef

PubMed Central

Goatley, Christopher H. R.; Bellwood, David R.

2017-01-01

Sediments are found in the epilithic algal matrix (EAM) of all coral reefs and play important roles in ecological processes. Although we have some understanding of patterns of EAM sediments across individual reefs, our knowledge of patterns across broader spatial scales is limited. We used an underwater vacuum sampler to quantify patterns in two of the most ecologically relevant factors of EAM sediments across the Great Barrier Reef: total load and grain size distribution. We compare these patterns with rates of sediment production and reworking by parrotfishes to gain insights into the potential contribution of parrotfishes to EAM sediments. Inner-shelf reef EAMs had the highest sediment loads with a mean of 864.1 g m-2, compared to 126.8 g m-2 and 287.4 g m-2 on mid- and outer-shelf reefs, respectively. High sediment loads were expected on inner-shelf reefs due to their proximity to the mainland, however, terrigenous siliceous sediments only accounted for 13–24% of total mass. On inner-shelf reef crests parrotfishes would take three months to produce the equivalent mass of sediment found in the EAM. On the outer-shelf it would take just three days, suggesting that inner-shelf EAMs are characterised by low rates of sediment turnover. By contrast, on-reef sediment production by parrotfishes is high on outer-shelf crests. However, exposure to oceanic swells means that much of this production is likely to be lost. Hydrodynamic activity also appears to structure sediment patterns at within-reef scales, with coarser sediments (> 250 μm) typifying exposed reef crest EAMs, and finer sediments (< 250 μm) typifying sheltered back-reef EAMs. As both the load and grain size of EAM sediments mediate a number of important ecological processes on coral reefs, the observed sediment gradients are likely to play a key role in the structure and function of the associated coral reef communities. PMID:28122042

Assessing environmental correlates of fish movement on a coral reef

NASA Astrophysics Data System (ADS)

Currey, Leanne M.; Heupel, Michelle R.; Simpfendorfer, Colin A.; Williams, Ashley J.

2015-12-01

Variation in dispersal and movement patterns of coral reef fishes is likely linked to changes in environmental conditions. Monitoring in situ environmental parameters on coral reefs in conjunction with the movements of fishes can help explain the relationship between exploited populations and their environment. Sixty adult Lethrinus miniatus were acoustically tagged and monitored along a coral reef slope for up to 1 yr. Individuals occurred more often on the reef slope during days of cooler temperatures, suggesting a thermal tolerance threshold may exist. Results indicate that individuals responded to elevated temperatures by moving away from the reef slope to deeper adjacent habitats, thus shifting their position in the water column to remain at a preferred temperature. Space use within the water column (vertical activity space) was not influenced by environmental parameters or fish size, but this result was possibly influenced by use of deeper habitat outside the acoustic array that was not monitored. With elevation of ocean temperature, L. miniatus may need to adapt to warmer waters or disperse into cooler habitats, by either shifting their distribution deeper or towards higher latitudes. Identifying key environmental drivers that affect the distribution of reef fishes is important, and may allow managers to predict the effect of these changes on exploited species.

Bathymetry and acoustic backscatter of the mid and outer continental shelf, head of De Soto Canyon, northeastern Gulf of Mexico: data, images, and GIS

USGS Publications Warehouse

Gardner, James V.; Hughes-Clarke, John E.; Mayer, Larry A.; Dartnell, Peter

2003-01-01

The mid to outer continental shelf off Mississippi-Alabama and off northwest Florida were the focus of U.S. Geological Survey (USGS) multibeam echosounder (MBES) mapping cruises in 2000 and 2001, respectively. These areas were mapped to investigate the extent of "deep-water reefs" first suggested by Ludwig and Walton (1957). The reefs off Mississippi and Alabama were initially described in water depths of 60 to 120 m (Ludwig and Walton, 1957) but the 2000 mapping found reef and hardgrounds to be much more extensive than previously thought (Gardner et al., 2001). The persistent trend of reef-like features along the outer shelf of Mississippi-Alabama suggested the trend might continue along the northwest Florida mid and outer shelf so a MBES-mapping effort was mounted in 2001 to test this suggestion. It is critical to determine the accurate location, geomorphology, and types of the ridges and reefs that occur in this region to understand the Quaternary history of the area and to assess their importance as benthic habitats for fisheries. The area known as the "Head of De Soto Canyon" is the large unmapped region between the 2000 and 2001 mapped areas. It was unknown whether the reefs of the Mississippi-Alabama shelf continue eastward into the head of De Soto Canyon and connect with the ridges and reefs mapped on the northwest Florida outer shelf. The existence of carbonate-cemented Quaternary to Holocene sandstones along the western wall of the head of De Soto Canyon (Shipp and Hopkins, 1978; Benson et al., 1997; W.W. Schroeder, personal commun., 2002) is of interest because of the potential benthic habitats they may represent. In the summer of 2002, the USGS, in cooperation with Minerals Management Service (MMS), the University of New Hampshire, and the University of New Brunswick, conducted a MBES survey of the Head of De Soto Canyon Region connecting the 2000 and 2001 mapped regions.

Drivers of shoreline change in atoll reef islands of the Tuamotu Archipelago, French Polynesia

NASA Astrophysics Data System (ADS)

Duvat, Virginie K. E.; Salvat, Bernard; Salmon, Camille

2017-11-01

This paper increases by around 30% the sample of atoll reef islands studied from a shoreline change perspective, and covers an under-studied geographical area, i.e. the French Tuamotu Archipelago. It brings new irrefutable evidences on the persistence of reef islands over the last decades, as 77% of the 111 study islands exhibited areal stability while 15% and 8% showed expansion and contraction, respectively. This paper also addresses a key research gap by interpreting the major local drivers controlling recent shoreline and island change, i.e. tropical cyclones and seasonal swells, sediment supply by coral reefs and human activities. The 1983 tropical cyclones had contrasting impacts, depending on the shoreline indicator considered. While they generally caused a marked retreat of the stability line, the base of the beach advanced at some locations, as a result of either sediment reworking or fresh sediment inputs. The post-cyclone fair weather period was characterised by reversed trends indicating island morphological readjustment. Cyclonic waves contributed to island upwards growth, which reached up to 1 m in places, through the transfer of sediments up onto the island surface. However, the steep outer slopes of atolls limited sediment transfers to the reef flat and island system. We found that 57% of the study islands are disturbed by human activities, including 'rural' and uninhabited islands. Twenty-six percent of these islands have lost the capacity to respond to ocean-climate related pressures, including the 'capital' islands concentrating atolls' population, infrastructures and economic activities, which is preoccupying under climate change.

Bathymetry and acoustic backscatter of the mid and outer continental shelf, head of De Soto Canyon, northeastern Gulf of Mexico

USGS Publications Warehouse

Gardner, James V.; Hughes-Clarke, John E.; Meyer, Larry A.

2002-01-01

The mid to outer continental shelf off Mississippi-Alabama and off northwest Florida were the focus of US Geological Survey (USGS) multibeam echosounder (MBES) mapping cruises in 2000 and 2001, respectively. These areas were mapped to investigate the extent of "deep-water reefs" first suggested by Ludwick and Walton (1957). The reefs off Mississippi and Alabama were initially described in water depths of 60 to 120 m (Ludwick and Walton, 1957) but the 2000 mapping found reef and hardgrounds to be much more extensive than previously thought (Gardner et al., 2001). The persistent trend of reef-like features along the outer shelf of Mississippi-Alabama suggested the trend might continue along the northwest Florida mid and outer shelf so a MBES-mapping effort was mounted in 2001 to test this suggestion. It is critical to determine the accurate location, geomorphology, and types of the ridges and reefs that occur in this region to understand the Quaternary history of the area and to assess their importance as benthic habitats for fisheries. The 2001 survey found a series of shelf-depth platforms with ridges (possibly reefs) constructed on their surfaces (Gardner et al., 2002). The area known as the "head of De Soto Canyon" is the large unmapped region between the 2000 and 2001 mapped areas. The head of De Soto Canyon is an outer shelf zone with a relatively steep western wall and a much gentler eastern wall. It was unknown prior to this cruise whether the reefs of the Mississippi-Alabama shelf continue eastward into the head of De Soto Canyon and connect with the ridges and reefs mapped on the northwest Florida outer shelf. The existence of carbonate-cemented latest Quaternary to Holocene sandstones along the western wall of the head of De Soto Canyon (Shipp and Hopkins, 1978; Benson et al., 1997; W.W. Schroeder, personnel comm., 2002) is of interest because of the potential benthic habitats they may represent. Precisely georeferenced high-resolution mapping of bathymetry is a fundamental first step in the study of an area suspected to be critical benthic habitats. Morphology is thought to be critical to define the distribution of dominant demersal plankton/planktivores communities. Community structure and trophodynamics of demersal fishes of the outer continental shelf of the northeastern Gulf of Mexico presently are focuses of a major USGS research project. A goal of the project is to answer questions concerning the relative roles played by morphology and surficial geology in controlling biological differentiation. Deep-water ridges, reefs, and outcrops are important because they are fish havens and key spawning sites, and are critical habitats for larval, juvenile, and economically important sport/food fishes.

A morphometric assessment and classification of coral reef spur and groove morphology

NASA Astrophysics Data System (ADS)

Duce, S.; Vila-Concejo, A.; Hamylton, S. M.; Webster, J. M.; Bruce, E.; Beaman, R. J.

2016-07-01

Spurs and grooves (SaGs) are a common and important feature of coral reef fore slopes worldwide. However, they are difficult to access and hence their morphodynamics and formation are poorly understood. We use remote sensing, with extensive ground truthing, to measure SaG morphometrics and environmental factors at 11,430 grooves across 17 reefs in the southern Great Barrier Reef, Australia. We revealed strong positive correlations between groove length, orientation and wave exposure with longer, more closely-spaced grooves oriented easterly reflecting the dominant swell regime. Wave exposure was found to be the most important factor controlling SaG distribution and morphology. Gradient of the upper reef slope was also an important limiting factor, with SaGs less likely to develop in steeply sloping (> 5°) areas. We used a subset of the morphometric data (11 reefs) to statistically define four classes of SaG. This classification scheme was tested on the remaining six reefs. SaGs in the four classes differ in morphology, groove substrate and coral cover. These differences provide insights into SaG formation mechanisms with implications to reef platform growth and evolution. We hypothesize SaG formation is dominated by coral growth processes at two classes and erosion processes at one class. A fourth class may represent relic features formed earlier in the Holocene transgression. The classes are comparable with SaGs elsewhere, suggesting the classification could be applied globally with the addition of new classes if necessary. While further research is required, we show remotely sensed SaG morphometrics can provide useful insights into reef platform evolution.

A rare and unusual new bittiine genus with two new species from the South Pacific (Cerithiidae, Gastropoda).

PubMed

Strong, Ellen E; Bouchet, Philippe

2018-01-01

A new genus, Limatium gen. n. , and two new species, L. pagodula sp. n. and L. aureum sp. n. are described, found on outer slopes of barrier reefs and fringing reefs in the South Pacific. They are rare for cerithiids, which typically occur in large populations. The two new species are represented by 108 specimens sampled over a period of 30 years, only 16 of which were collected alive. Three subadults from the Philippines and Vanuatu likely represent a third species. In addition to their rarity, Limatium species are atypical for cerithiids in their smooth, polished, honey to golden brown shells with distinctive white fascioles extending suture to suture. The radula presents a unique morphology that does not readily suggest an affinity to any of the cerithiid subfamilies. Two live-collected specimens, one of each species and designated as holotypes, were preserved in 95% ethanol and sequenced. Bayesian analysis of partial COI and 16S rDNA sequences demonstrates a placement in the Bittiinae, further extending our morphological concept of the subfamily.

Elevated temperatures and bleaching on a high latitude coral reef: the 1988 Bermuda event

NASA Astrophysics Data System (ADS)

Cook, Clayton B.; Logan, Alan; Ward, Jack; Luckhurst, Brian; Berg, Carl J.

1990-03-01

Sea temperatures were normal in Bermuda during 1987, when Bermuda escaped the episodes of coral bleaching which were prevalent throughout the Caribbean region. Survey transecs in 1988 on 4 6 m reefs located on the rim margin and on a lagoonal patch reef revealed bleaching only of zoanthids between May and July. Transect and tow surveys in August and September revealed bleaching of several coral species; Millepora alcicornis on rim reefs was the most extensively affected. The frequency of bleaching in this species, Montastrea annularis and perhaps Diploria labyrinthiformis was significantly higher on outer reefs than on inshore reefs. This bleaching period coincided with the longest period of elevated sea temperatures in Bermuda in 38 years (28.9 30.9°C inshore, >28° offshore). By December, when temperatures had returned to normal, bleaching of seleractinians continued, but bleaching of M. alcicornis on the outer reefs was greatly reduced. Our observations suggest that corals which normally experience wide temperature ranges are less sensitive to thermal stress, and that high-latitude reef corals are sensitive to elevated temperatures which are within the normal thermal range of corals at lower latitudes.

Assessing the effects of non-point source pollution on American Samoa's coral reef communities.

PubMed

Houk, Peter; Didonato, Guy; Iguel, John; Van Woesik, Robert

2005-08-01

Surveys were completed on Tutuila Island, American Samoa, to characterize reef development and assess the impacts of non-point source pollution on adjacent coral reefs at six sites. Multivariate analyses of benthic and coral community data found similar modern reef development at three locations; Aoa, Alofau, and Leone. These sites are situated in isolated bays with gentle sloping foundations. Aoa reefs had the highest estimates of crustose coralline algae cover and coral species richness, while Leone and Alofau showed high abundances of macroalgae and Porites corals. Aoa has the largest reef flat between watershed discharge and the reef slope, and the lowest human population density. Masefau and Fagaalu have a different geomorphology consisting of cemented staghorn coral fragments and steep slopes, however, benthic and coral communities were not similar. Benthic data suggest Fagaalu is heavily impacted compared with all other sites. Reef communities were assessed as bio-criteria indicators for waterbody health, using the EPA aquatic life use support designations of (1) fully supportive, (2) partially supportive, and (3) non-supportive for aquatic life. All sites resulted in a partially supportive ranking except Fagaalu, which was non-supportive. The results of this rapid assessment based upon relative benthic community measures are less desirable than long-term dataset analyses from monitoring programs, however it fills an important role for regulatory agencies required to report annual waterbody assessments. Future monitoring sites should be established to increase the number of replicates within each geological and physical setting to allow for meaningful comparisons along a gradient of hypothesized pollution levels.

A test of trophic cascade theory: fish and benthic assemblages across a predator density gradient on coral reefs.

PubMed

Casey, Jordan M; Baird, Andrew H; Brandl, Simon J; Hoogenboom, Mia O; Rizzari, Justin R; Frisch, Ashley J; Mirbach, Christopher E; Connolly, Sean R

2017-01-01

Removal of predators is often hypothesized to alter community structure through trophic cascades. However, despite recent advances in our understanding of trophic cascades, evidence is often circumstantial on coral reefs because fishing pressure frequently co-varies with other anthropogenic effects, such as fishing for herbivorous fishes and changes in water quality due to pollution. Australia's outer Great Barrier Reef (GBR) has experienced fishing-induced declines of apex predators and mesopredators, but pollution and targeting of herbivorous fishes are minimal. Here, we quantify fish and benthic assemblages across a fishing-induced predator density gradient on the outer GBR, including apex predators and mesopredators to herbivores and benthic assemblages, to test for evidence of trophic cascades and alternative hypotheses to trophic cascade theory. Using structural equation models, we found no cascading effects from apex predators to lower trophic levels: a loss of apex predators did not lead to higher levels of mesopredators, and this did not suppress mobile herbivores and drive algal proliferation. Likewise, we found no effects of mesopredators on lower trophic levels: a decline of mesopredators was not associated with higher abundances of algae-farming damselfishes and algae-dominated reefs. These findings indicate that top-down forces on coral reefs are weak, at least on the outer GBR. We conclude that predator-mediated trophic cascades are probably the exception rather than the rule in complex ecosystems such as the outer GBR.

Population structure of the hydrocoral Millepora platyphylla in habitats experiencing different flow regimes in Moorea, French Polynesia

PubMed Central

Mercière, Alexandre; Vermeij, Mark J. A.; Planes, Serge

2017-01-01

While the fire coral Millepora platyphylla is an important component of Indo-Pacific reefs, where it thrives in a wide range of environments, the ecological and biological processes driving its distribution and population structure are not well understood. Here, we quantified this species’ population structure in five habitats with contrasting hydrodynamic regimes in Moorea, French Polynesia; two in the fore reef: mid and upper slopes, and three in the lagoon: back, fringing and patch reefs. A total of 3651 colonies of fire corals were mapped and measured over 45,000 m2 of surveyed reef. Due to the species’ sensitivity to fragmentation in response to strong water movement, hydrodynamic conditions (e.g. waves, pass and lagoonal circulation) corresponded to marked differences in colony size distributions, morphology and recruitment dynamics among habitats. The size structure varied among reef habitats with higher proportions of larger colonies in calm nearshore reefs (fringing and patch reefs), while populations were dominated by smaller colonies in the exposed fore reefs. The highest densities of fire corals were recorded in fore reef habitats (0.12–0.20 n.m-2) where the proportion of recruits and juveniles was higher at mid slope populations (49.3%) than on the upper slope near where waves break (29.0%). In the latter habitat, most colonies grew as vertical sheets on encrusting bases making them more vulnerable to colony fragmentation, whereas fire corals were encrusting or massive in all other habitats. The lowest densities of M. platyphylla occurred in lagoonal habitats (0.02–0.04 n.m-2) characterized by a combination of low water movement and other physical and biological stressors. This study reports the first evidence of population structure of fire corals in two common reef environments and illustrates the importance of water flow in driving population dynamic processes of these reef-building species. PMID:28273119

Population structure of the hydrocoral Millepora platyphylla in habitats experiencing different flow regimes in Moorea, French Polynesia.

PubMed

Dubé, Caroline E; Mercière, Alexandre; Vermeij, Mark J A; Planes, Serge

2017-01-01

While the fire coral Millepora platyphylla is an important component of Indo-Pacific reefs, where it thrives in a wide range of environments, the ecological and biological processes driving its distribution and population structure are not well understood. Here, we quantified this species' population structure in five habitats with contrasting hydrodynamic regimes in Moorea, French Polynesia; two in the fore reef: mid and upper slopes, and three in the lagoon: back, fringing and patch reefs. A total of 3651 colonies of fire corals were mapped and measured over 45,000 m2 of surveyed reef. Due to the species' sensitivity to fragmentation in response to strong water movement, hydrodynamic conditions (e.g. waves, pass and lagoonal circulation) corresponded to marked differences in colony size distributions, morphology and recruitment dynamics among habitats. The size structure varied among reef habitats with higher proportions of larger colonies in calm nearshore reefs (fringing and patch reefs), while populations were dominated by smaller colonies in the exposed fore reefs. The highest densities of fire corals were recorded in fore reef habitats (0.12-0.20 n.m-2) where the proportion of recruits and juveniles was higher at mid slope populations (49.3%) than on the upper slope near where waves break (29.0%). In the latter habitat, most colonies grew as vertical sheets on encrusting bases making them more vulnerable to colony fragmentation, whereas fire corals were encrusting or massive in all other habitats. The lowest densities of M. platyphylla occurred in lagoonal habitats (0.02-0.04 n.m-2) characterized by a combination of low water movement and other physical and biological stressors. This study reports the first evidence of population structure of fire corals in two common reef environments and illustrates the importance of water flow in driving population dynamic processes of these reef-building species.

Carbonate Production by Benthic Communities on Shallow Coralgal Reefs of Abrolhos Bank, Brazil.

PubMed

Reis, Vanessa Moura Dos; Karez, Cláudia Santiago; Mariath, Rodrigo; de Moraes, Fernando Coreixas; de Carvalho, Rodrigo Tomazetto; Brasileiro, Poliana Silva; Bahia, Ricardo da Gama; Lotufo, Tito Monteiro da Cruz; Ramalho, Laís Vieira; de Moura, Rodrigo Leão; Francini-Filho, Ronaldo Bastos; Pereira-Filho, Guilherme Henrique; Thompson, Fabiano Lopes; Bastos, Alex Cardoso; Salgado, Leonardo Tavares; Amado-Filho, Gilberto Menezes

2016-01-01

The abundance of reef builders, non-builders and the calcium carbonate produced by communities established in Calcification Accretion Units (CAUs) were determined in three Abrolhos Bank shallow reefs during the period from 2012 to 2014. In addition, the seawater temperature, the irradiance, and the amount and composition of the sediments were determined. The inner and outer reef arcs were compared. CAUs located on the inner reef shelf were under the influence of terrigenous sediments. On the outer reefs, the sediments were composed primarily of marine biogenic carbonates. The mean carbonate production in shallow reefs of Abrolhos was 579 ± 98 g m-2 y-1. The builder community was dominated by crustose coralline algae, while the non-builder community was dominated by turf. A marine heat wave was detected during the summer of 2013-2014, and the number of consecutive days with a temperature above or below the summer mean was positively correlated with the turf cover increase. The mean carbonate production of the shallow reefs of Abrolhos Bank was greater than the estimated carbonate production measured for artificial structures on several other shallow reefs of the world. The calcimass was higher than the non-calcareous mass, suggesting that the Abrolhos reefs are still in a positive carbonate production balance. Given that marine heat waves produce an increase of turf cover on the shallow reefs of the Abrolhos, a decrease in the cover represented by reef builders and shifting carbonate production are expected in the near future.

Carbonate Production by Benthic Communities on Shallow Coralgal Reefs of Abrolhos Bank, Brazil

PubMed Central

dos Reis, Vanessa Moura; Karez, Cláudia Santiago; Mariath, Rodrigo; de Moraes, Fernando Coreixas; de Carvalho, Rodrigo Tomazetto; Brasileiro, Poliana Silva; Bahia, Ricardo da Gama; Lotufo, Tito Monteiro da Cruz; Ramalho, Laís Vieira; de Moura, Rodrigo Leão; Francini-Filho, Ronaldo Bastos; Pereira-Filho, Guilherme Henrique; Thompson, Fabiano Lopes; Bastos, Alex Cardoso; Salgado, Leonardo Tavares; Amado-Filho, Gilberto Menezes

2016-01-01

The abundance of reef builders, non-builders and the calcium carbonate produced by communities established in Calcification Accretion Units (CAUs) were determined in three Abrolhos Bank shallow reefs during the period from 2012 to 2014. In addition, the seawater temperature, the irradiance, and the amount and composition of the sediments were determined. The inner and outer reef arcs were compared. CAUs located on the inner reef shelf were under the influence of terrigenous sediments. On the outer reefs, the sediments were composed primarily of marine biogenic carbonates. The mean carbonate production in shallow reefs of Abrolhos was 579 ± 98 g m-2 y-1. The builder community was dominated by crustose coralline algae, while the non-builder community was dominated by turf. A marine heat wave was detected during the summer of 2013–2014, and the number of consecutive days with a temperature above or below the summer mean was positively correlated with the turf cover increase. The mean carbonate production of the shallow reefs of Abrolhos Bank was greater than the estimated carbonate production measured for artificial structures on several other shallow reefs of the world. The calcimass was higher than the non-calcareous mass, suggesting that the Abrolhos reefs are still in a positive carbonate production balance. Given that marine heat waves produce an increase of turf cover on the shallow reefs of the Abrolhos, a decrease in the cover represented by reef builders and shifting carbonate production are expected in the near future. PMID:27119151

Community structure and biogeography of shore fishes in the Gulf of Aqaba, Red Sea

NASA Astrophysics Data System (ADS)

Khalaf, Maroof A.; Kochzius, Marc

2002-02-01

Shore fish community structure off the Jordanian Red Sea coast was determined on fringing coral reefs and in a seagrass-dominated bay at 6 m and 12 m depths. A total of 198 fish species belonging to 121 genera and 43 families was recorded. Labridae and Pomacentridae dominated the ichthyofauna in terms of species richness and Pomacentridae were most abundant. Neither diversity nor species richness was correlated to depth. The abundance of fishes was higher at the deep reef slope, due to schooling planktivorous fishes. At 12 m depth abundance of fishes at the seagrass-dominated site was higher than on the coral reefs. Multivariate analysis demonstrated a strong influence on the fish assemblages by depth and benthic habitat. Fish species richness was positively correlated with hard substrate cover and habitat diversity. Abundance of corallivores was positively linked with live hard coral cover. The assemblages of fishes were different on the shallow reef slope, deep reef slope and seagrass meadows. An analysis of the fish fauna showed that the Gulf of Aqaba harbours a higher species richness than previously reported. The comparison with fish communities on other reefs around the Arabian Peninsula and Indian Ocean supported the recognition of an Arabian subprovince within the Indian Ocean. The affinity of the Arabian Gulf ichthyofauna to the Red Sea is not clear.

Habitat degradation and fishing effects on the size structure of coral reef fish communities.

PubMed

Wilson, S K; Fisher, R; Pratchett, M S; Graham, N A J; Dulvy, N K; Turner, R A; Cakacaka, A; Polunin, N V C

2010-03-01

Overfishing and habitat degradation through climate change pose the greatest threats to sustainability of marine resources on coral reefs. We examined how changes in fishing pressure and benthic habitat composition influenced the size spectra of island-scale reef fish communities in Lau, Fiji. Between 2000 and 2006 fishing pressure declined in the Lau Islands due to declining human populations and reduced demand for fresh fish. At the same time, coral cover declined and fine-scale architectural complexity eroded due to coral bleaching and outbreaks of crown-of-thorns starfish, Acanthaster planci. We examined the size distribution of reef fish communities using size spectra analysis, the linearized relationship between abundance and body size class. Spatial variation in fishing pressure accounted for 31% of the variation in the slope of the size spectra in 2000, higher fishing pressure being associated with a steeper slope, which is indicative of fewer large-bodied fish and/or more small-bodied fish. Conversely, in 2006 spatial variation in habitat explained 53% of the variation in the size spectra slopes, and the relationship with fishing pressure was much weaker (approximately 12% of variation) than in 2000. Reduced cover of corals and lower structural complexity was associated with less steep size spectra slopes, primarily due to reduced abundance of fish < 20 cm. Habitat degradation will compound effects of fishing on coral reefs as increased fishing reduces large-bodied target species, while habitat loss results in fewer small-bodied juveniles and prey that replenish stocks and provide dietary resources for predatory target species. Effective management of reef resources therefore depends on both reducing fishing pressure and maintaining processes that encourage rapid recovery of coral habitat.

Catastrophic impact of typhoon waves on coral communities in the Ryukyu Islands under global warming

NASA Astrophysics Data System (ADS)

Hongo, Chuki; Kawamata, Hideki; Goto, Kazuhisa

2012-06-01

Typhoon-generated storm waves generally cause mechanical damage to coral communities on present-day reefs, and the magnitude and extent of damage is predicted to increase in the near future as a result of global warming. Therefore, a comprehensive understanding of potential future scenarios of reef ecosystems is of prime interest. This study assesses the current status of coral communities on Ibaruma reef, Ryukyu Islands, on the basis of field observations, engineering and fluid dynamic models, and calculations of wave motion, and predicts the potential effects of a super-extreme typhoon (incident wave height,H = 20 m; wave period, T = 20 s) on the reef. On the present-day reef, massive corals occur in shallow lagoons and tabular corals occur from the reef crest to the reef slope. The observed distribution of corals, which is frequently attacked by moderate (H = 10 m, T = 10 s) and extreme (H = 10 m, T = 15 s) typhoons, is consistent with the predictions of engineering models. Moreover, this study indicates that if a super-extreme typhoon attacks the reef in the near future, massive corals will survive in the shallow lagoons but tabular corals on the reef crest and reef slope will be severely impacted. The findings imply that super-extreme typhoons will cause a loss of species diversity, as the tabular corals are important reef builders and are critical to the maintenance of reef ecosystems. Consequently, reef restoration is a key approach to maintaining reef ecosystems in the wake of super-extreme typhoons.

50 CFR 622.2 - Definitions and acronyms.

Code of Federal Regulations, 2014 CFR

2014-10-01

... where coral growth abounds, including patch reefs, outer bank reefs, deep water banks, and hard bottoms... muscle tissue, of a spiny lobster along the top middorsal line (middle of the back) to the rearmost...

Axial flow positive displacement worm gas generator

NASA Technical Reports Server (NTRS)

Giffin, Rollin George (Inventor); Fakunle, Oladapo (Inventor); Murrow, Kurt David (Inventor)

2010-01-01

An axial flow positive displacement engine has an inlet axially spaced apart and upstream from an outlet. Inner and outer bodies have offset inner and outer axes extend from the inlet to the outlet through first, second, and third sections of a core assembly in serial downstream flow relationship. At least one of the bodies is rotatable about its axis. The inner and outer bodies have intermeshed inner and outer helical blades wound about the inner and outer axes respectively. The inner and outer helical blades extend radially outwardly and inwardly respectively. The helical blades have first, second, and third twist slopes in the first, second, and third sections respectively. The first twist slopes are less than the second twist slopes and the third twist slopes are less than the second twist slopes. A combustor section extends axially downstream through at least a portion of the second section.

Acropora interbranch skeleton Sr/Ca ratios: Evaluation of a potential new high-resolution paleothermometer

NASA Astrophysics Data System (ADS)

Sadler, James; Nguyen, Ai D.; Leonard, Nicole D.; Webb, Gregory E.; Nothdurft, Luke D.

2016-04-01

The majority of coral geochemistry-based paleoclimate reconstructions in the Indo-Pacific are conducted on selectively cored colonies of massive Porites. This restriction to a single genus may make it difficult to amass the required paleoclimate data for studies that require deep reef coring techniques. Acropora, however, is a highly abundant coral genus in both modern and fossil reef systems and displays potential as a novel climate archive. Here we present a calibration study for Sr/Ca ratios recovered from interbranch skeleton in corymbose Acropora colonies from Heron Reef, southern Great Barrier Reef. Significant intercolony differences in absolute Sr/Ca ratios were normalized by producing anomaly plots of both coral geochemistry and instrumental water temperature records. Weighted linear regression of these anomalies from the lagoon and fore-reef slope provide a sensitivity of -0.05 mmol/mol °C-1, with a correlation coefficient (r2 = 0.65) comparable to those of genera currently used in paleoclimate reconstructions. Reconstructions of lagoon and reef slope mean seasonality in water temperature accurately identify the greater seasonal amplitude observed in the lagoon of Heron Reef. A longer calibration period is, however, required for reliable reconstructions of annual mean water temperatures.

Retrograde accretion of a Caribbean fringing reef controlled by hurricanes and sea-level rise

NASA Astrophysics Data System (ADS)

Blanchon, Paul; Richards, Simon; Bernal, Juan Pablo; Cerdeira-Estrada, Sergio; Ibarra, M. Socrates; Corona-Martínez, Liliana; Martell-Dubois, Raúl

2017-10-01

Predicting the impact of sea-level (SL) rise on coral reefs requires reliable models of reef accretion. Most assume that accretion results from vertical growth of coralgal framework, but recent studies show that reefs exposed to hurricanes consist of layers of coral gravel rather than in-place corals. New models are therefore needed to account for hurricane impact on reef accretion over geological timescales. To investigate this geological impact, we report the configuration and development of a 4-km-long fringing reef at Punta Maroma along the northeast Yucatan Peninsula. Satellite-derived bathymetry shows the crest is set-back a uniform distance of 315 ±15 m from a mid-shelf slope break, and the reef-front decreases 50% in width and depth along its length. A 12-core drill transect constrained by multiple 230Th ages shows the reef is composed of an 2-m thick layer of coral clasts that has retrograded 100 m over its back-reef during the last 5.5 ka. These findings are consistent with a hurricane-control model of reef development where large waves trip and break over the mid-shelf slope break, triggering rapid energy dissipation and thus limiting how far upslope individual waves can fragment corals and redistribute clasts. As SL rises and water depth increases, energy dissipation during wave-breaking is reduced, extending the clast-transport limit, thus leading to reef retrogradation. This hurricane model may be applicable to a large sub-set of fringing reefs in the tropical Western-Atlantic necessitating a reappraisal of their accretion rates and response to future SL rise.

A detrital sediment budget of a Maldivian reef platform

NASA Astrophysics Data System (ADS)

Morgan, K. M.; Kench, P. S.

2014-10-01

Sediment dynamics are an important control on the morphology and development of reef systems by actively removing and redistributing excess detrital sediment. This study presents quantitative data from direct point measurements of sediment transport on the platform surface and fore-reef slope of Vabbinfaru reef, North Malé Atoll, Maldives. A suite of sediment traps were used to construct actual rates of platform sediment fluxes and off-reef export over different spatial and temporal (seasonal) scales to establish key sediment transport pathways. Findings showed that high sediment fluxes occur on Vabbinfaru platform in the absence of major storm activity (up to 1905 g m- 1 d- 1), with 95% of annual transport occurring during the southwest monsoon as a result of increased wave energy. Climate-driven changes in the platform process regime caused a reversal of net sediment transport pathways between each monsoon season. Off-reef export rates were high, reaching a maximum of 12.58 kg m- 1 y- 1 for gravel and 407 g m- 1 d- 1 for sand-sized sediment. An estimated 127,120 kg is exported from the platform annually equating to a significant loss from the reef sediment budget and contributing to the long-term geomorphic development of the fore-reef slope and atoll basin. Detrital sediment reservoirs on Vabbinfaru are not purely depositional carbonate sinks, but rather temporary stores that are important in the transfer of sediment between reef zones.

The role of the reef-dune system in coastal protection in Puerto Morelos (Mexico)

NASA Astrophysics Data System (ADS)

Franklin, Gemma L.; Torres-Freyermuth, Alec; Medellin, Gabriela; Allende-Arandia, María Eugenia; Appendini, Christian M.

2018-04-01

Reefs and sand dunes are critical morphological features providing natural coastal protection. Reefs dissipate around 90 % of the incident wave energy through wave breaking, whereas sand dunes provide the final natural barrier against coastal flooding. The storm impact on coastal areas with these features depends on the relative elevation of the extreme water levels with respect to the sand dune morphology. However, despite the importance of barrier reefs and dunes in coastal protection, poor management practices have degraded these ecosystems, increasing their vulnerability to coastal flooding. The present study aims to theoretically investigate the role of the reef-dune system in coastal protection under current climatic conditions at Puerto Morelos, located in the Mexican Caribbean Sea, using a widely validated nonlinear non-hydrostatic numerical model (SWASH). Wave hindcast information, tidal level, and a measured beach profile of the reef-dune system in Puerto Morelos are employed to estimate extreme runup and the storm impact scale for current and theoretical scenarios. The numerical results show the importance of including the storm surge when predicting extreme water levels and also show that ecosystem degradation has important implications for coastal protection against storms with return periods of less than 10 years. The latter highlights the importance of conservation of the system as a mitigation measure to decrease coastal vulnerability and infrastructure losses in coastal areas in the short to medium term. Furthermore, the results are used to evaluate the applicability of runup parameterisations for beaches to reef environments. Numerical analysis of runup dynamics suggests that runup parameterisations for reef environments can be improved by including the fore reef slope. Therefore, future research to develop runup parameterisations incorporating reef geometry features (e.g. reef crest elevation, reef lagoon width, fore reef slope) is warranted.

Contribution of planktonic and benthic food sources to the diet of the reef-forming vermetid gastropod Dendropoma petraeum in the western Mediterranean

NASA Astrophysics Data System (ADS)

Vizzini, Salvatrice; Colombo, Francesca; Costa, Valentina; Mazzola, Antonio

2012-01-01

In the Mediterranean Sea, the vermetid Dendropoma petraeum (Monterosato, 1884) forms highly biodiverse reefs that have received increasing attention in recent years although very little is known about the food habit of this species. The main goal of this study was to describe the trophic role of planktonic and benthic food sources for D. petraeum. Specimens from three morphological zones of the reef (inner edge, cuvette and outer edge) at two sites with different wave exposure along the north-western coast of Sicily (Italy; western Mediterranean) were compared for δ 13C and δ 15N. Isotopic determinations were also carried out on potential food sources identified in epilithon, reef macroalgae and suspended particulate organic matter. δ 13C for D. petraeum showed significantly more depleted values in the more exposed conditions (i.e. the site with higher wave exposure and outer edge of the reef), while δ 15N did not differ appreciably. These results suggest greater exploitation of benthic sources in the sheltered than in the exposed site and reveal diet shift and trophic flexibility at a small spatial scale for the reef-former D. petraeum.

Wave and setup dynamics on steeply-sloping reefs with large bottom roughness

NASA Astrophysics Data System (ADS)

Buckley, M. L.; Hansen, J.; Lowe, R.

2016-12-01

High-resolution observations from a wave flume were used to investigate the dynamics of wave setup over a steeply-sloping fringing reef profile with the effect of bottom roughness modeled using roughness elements scaled to mimic a coral reef. Results with roughness were compared with smooth bottom runs across sixteen offshore wave and still water level conditions. The time-averaged and depth-integrated force balance was evaluated from observations collected at seventeen locations across the flume, which was found to consist of cross-shore pressure and radiation stress gradients whose sum was balanced by mean quadratic bottom stresses. We found that when radiation stress gradients were calculated from observations of the radiation stress derived from linear wave theory, both wave setdown and setup were under predicted for the majority of wave and water level conditions tested. Inaccuracies in the predicted setdown and setup were improved by including a wave roller model, which provides a correction to the kinetic energy predicted by linear wave theory for breaking waves and produces a spatial delay in the wave forcing that was consistent with the observations. The introduction of roughness had two primary effects. First, the amount of wave energy dissipated during wave breaking was reduced due to frictional wave dissipation that occurred on the reef slope offshore of the breakpoint. Second, offshore directed mean bottom stresses were generated by the interaction of the combined wave-current velocity field with the roughness elements. These two mechanisms acted counter to one another. As a result, setup on the reef flat was comparable (7% mean difference) between corresponding rough and smooth runs. These findings are used to assess prior results from numerical modelling studies of reefs, and also to discuss the broader implications for how steep slopes and large roughness influences setup dynamics for general nearshore systems.

Adaptive divergence in a scleractinian coral: physiological adaptation of Seriatopora hystrix to shallow and deep reef habitats

PubMed Central

2011-01-01

Background Divergent natural selection across environmental gradients has been acknowledged as a major driver of population and species divergence, however its role in the diversification of scleractinian corals remains poorly understood. Recently, it was demonstrated that the brooding coral Seriatopora hystrix and its algal endosymbionts (Symbiodinium) are genetically partitioned across reef environments (0-30 m) on the far northern Great Barrier Reef. Here, we explore the potential mechanisms underlying this differentiation and assess the stability of host-symbiont associations through a reciprocal transplantation experiment across habitats ('Back Reef', 'Upper Slope' and 'Deep Slope'), in combination with molecular (mtDNA and ITS2-DGGE) and photo-physiological analyses (respirometry and HPLC). Results The highest survival rates were observed for native transplants (measured 14 months after transplantation), indicating differential selective pressures between habitats. Host-symbiont assemblages remained stable during the experimental duration, demonstrating that the ability to "shuffle" or "switch" symbionts is restricted in S. hystrix. Photo-physiological differences were observed between transplants originating from the shallow and deep habitats, with indirect evidence of an increased heterotrophic capacity in native deep-water transplants (from the 'Deep Slope' habitat). Similar photo-acclimatisation potential was observed between transplants originating from the two shallow habitats ('Back Reef' and 'Upper Slope'), highlighting that their genetic segregation over depth may be due to other, non-photo-physiological traits under selection. Conclusions This study confirms that the observed habitat partitioning of S. hystrix (and associated Symbiodinium) is reflective of adaptive divergence along a depth gradient. Gene flow appears to be reduced due to divergent selection, highlighting the potential role of ecological mechanisms, in addition to physical dispersal barriers, in the diversification of scleractinian corals and their associated Symbiodinium. PMID:22004364

Impacts of category 5 tropical cyclone Fantala (April 2016) on Farquhar Atoll, Seychelles Islands, Indian Ocean

NASA Astrophysics Data System (ADS)

Duvat, Virginie K. E.; Volto, Natacha; Salmon, Camille

2017-12-01

This paper provides new insights on the impacts of a category 5 tropical cyclone on Indian Ocean atoll reef islands. Using multi-date aerial imagery and field observations, the contribution of tropical cyclone Fantala to shoreline and island change, and to sediment production and transport, was assessed on Farquhar Atoll, Seychelles Islands. Results show that the two largest islands (> 3 km2) only suffered limited land loss (- 1.19 to - 8.35%) while small islets lost 13.17 to 28.45% of their initial land area. Islands and islets exhibited contrasting responses depending on their location, topography and vegetation type. Depending on islands, the retreat of the vegetation line occurred either along all shorelines, or along ocean shoreline only. The structure (wooded vs. grassy) and origin (native vs. introduced) of the vegetation played a major role in island response. Five days after the cyclone, beach width and beach area were multiplied by 1.5 to 10, depending on the setting, and were interpreted as resulting from both sediment reworking and the supply of large amounts of fresh sediments by the reef outer slopes to the island system. Fourth months after the cyclone, extended sheets of loose sediments were still present on the reef flat and in inter-islet channels and shallow lagoon waters, indicating continuing sediment transfer to islands. As a reminder (see Section 3.1.4), beach width uncertainty equals to 6 m for all beach sections.

Preliminary numerical simulation for shallow strata stability of coral reef in South China Sea

NASA Astrophysics Data System (ADS)

Tang, Qinqin; Zhan, Wenhuan; Zhang, Jinchang

2017-04-01

Coral reefs are the geologic material and special rock and soil, which live in shallow water of the tropic ocean and are formed through biological and geological action. Since infrastructure construction is being increasingly developed on coral reefs during recent years, it is necessary to evaluate the shallow strata stability of coral reefs in the South China Sea. The paper is to study the borehole profiles for shallow strata of coral reefs in the South China Sea, especially in the hydrodynamic marine environment?, and to establish a geological model for numerical simulation with Geo-Studio software. Five drilling holes show a six-layer shallow structure of South China Sea, including filling layer, mid-coarse sand, coral sand gravel, fine sand, limestone debris and reef limestone. The shallow coral reef profile next to lagoon is similar to "layers cake", in which the right side close to the sea is analogous to "block cake". The simulation results show that coral reef stability depends on wave loads and earthquake strength, as well as the physical properties of coral reefs themselves. The safety factor of the outer reef is greater than 10.0 in the static condition, indicating that outer reefs are less affected by the wave and earthquake. However, the safety factor next to lagoon is ranging from 0.1 to 4.9. The main reason for the variations that the strata of coral reefs close to the sea are thick. For example, the thickness of reef limestone is more than 10 m and equivalent to the block. When the thickness of inside strata is less than 10 m, they show weak engineering geological characteristics. These findings can provide useful information for coral reef constructions in future. This work was funded by National Basic Research Program of China (contract: 2013CB956104) and National Natural Science Foundation of China (contract: 41376063).

Diurnal warming in shallow coastal seas: Observations from the Caribbean and Great Barrier Reef regions

NASA Astrophysics Data System (ADS)

Zhu, X.; Minnett, P. J.; Berkelmans, R.; Hendee, J.; Manfrino, C.

2014-07-01

A good understanding of diurnal warming in the upper ocean is important for the validation of satellite-derived sea surface temperature (SST) against in-situ buoy data and for merging satellite SSTs taken at different times of the same day. For shallow coastal regions, better understanding of diurnal heating could also help improve monitoring and prediction of ecosystem health, such as coral reef bleaching. Compared to its open ocean counterpart which has been studied extensively and modeled with good success, coastal diurnal warming has complicating localized characteristics, including coastline geometry, bathymetry, water types, tidal and wave mixing. Our goal is to characterize coastal diurnal warming using two extensive in-situ temperature and weather datasets from the Caribbean and Great Barrier Reef (GBR), Australia. Results showed clear daily warming patterns in most stations from both datasets. For the three Caribbean stations where solar radiation is the main cause of daily warming, the mean diurnal warming amplitudes were about 0.4 K at depths of 4-7 m and 0.6-0.7 K at shallower depths of 1-2 m; the largest warming value was 2.1 K. For coral top temperatures of the GBR, 20% of days had warming amplitudes >1 K, with the largest >4 K. The bottom warming at shallower sites has higher daily maximum temperatures and lower daily minimum temperatures than deeper sites nearby. The averaged daily warming amplitudes were shown to be closely related to daily average wind speed and maximum insolation, as found in the open ocean. Diurnal heating also depends on local features including water depth, location on different sections of the reef (reef flat vs. reef slope), the relative distance from the barrier reef chain (coast vs. lagoon stations vs. inner barrier reef sites vs. outer rim sites); and the proximity to the tidal inlets. In addition, the influence of tides on daily temperature changes and its relative importance compared to solar radiation was quantified by calculating the ratio of power spectrum densities at the principal lunar semidiurnal M2 tide versus 24-hour cycle frequency representing mainly solar radiation forcing, i.e., (PSDM2/PSD24). Despite the fact that GBR stations are generally located at regions with large tidal changes, the tidal effects were modest: 80% of stations showed value of (PSDM2/PSD24) of less than 10%.

Fire coral clones demonstrate phenotypic plasticity among reef habitats.

PubMed

Dubé, Caroline E; Boissin, Emilie; Maynard, Jeffrey A; Planes, Serge

2017-08-01

Clonal populations are often characterized by reduced levels of genotypic diversity, which can translate into lower numbers of functional phenotypes, both of which impede adaptation. Study of partially clonal animals enables examination of the environmental settings under which clonal reproduction is favoured. Here, we gathered genotypic and phenotypic information from 3,651 georeferenced colonies of the fire coral Millepora platyphylla in five habitats with different hydrodynamic regimes in Moorea, French Polynesia. In the upper slope where waves break, most colonies grew as vertical sheets ("sheet tree") making them more vulnerable to fragmentation. Nearly all fire corals in the other habitats are encrusting or massive. The M. platyphylla population is highly clonal (80% of the colonies are clones), while characterized by the highest genotype diversity ever documented for terrestrial or marine populations (1,064 genotypes). The proportion of clones varies greatly among habitats (≥58%-97%) and clones (328 clonal lineages) are distributed perpendicularly from the reef crest, perfectly aligned with wave energy. There are six clonal lineages with clones dispersed in at least two adjacent habitats that strongly demonstrate phenotypic plasticity. Eighty per cent of the colonies in these lineages are "sheet tree" on the upper slope, while 80%-100% are encrusting or massive on the mid slope and back reef. This is a unique example of phenotypic plasticity among reef-building coral clones as corals typically have wave-tolerant growth forms in high-energy reef areas. © 2017 John Wiley & Sons Ltd.

Additive diversity partitioning of fish in a Caribbean coral reef undergoing shift transition.

PubMed

Acosta-González, Gilberto; Rodríguez-Zaragoza, Fabián A; Hernández-Landa, Roberto C; Arias-González, Jesús E

2013-01-01

Shift transitions in dominance on coral reefs from hard coral cover to fleshy macroalgae are having negative effects on Caribbean coral reef communities. Data on spatiotemporal changes in biodiversity during these modifications are important for decision support for coral reef biodiversity protection. The main objective of this study is to detect the spatiotemporal patterns of coral reef fish diversity during this transition using additive diversity-partitioning analysis. We examined α, β and γ fish diversity from 2000 to 2010, during which time a shift transition occurred at Mahahual Reef, located in Quintana Roo, Mexico. Data on coral reef fish and benthic communities were obtained from 12 transects per geomorphological unit (GU) in two GUs (reef slope and terrace) over six years (2000, 2005, 2006, 2007, 2008, 2010). Spatial analysis within and between the GUs indicated that the γ-diversity was primarily related to higher β-diversity. Throughout the six study years, there were losses of α, β and γ-diversity associated spatially with the shallow (reef slope) and deeper (reef terrace) GUs and temporally with the transition in cover from mound corals to fleshy macroalgae and boulder corals. Despite a drastic reduction in the number of species over time, β-diversity continues to be the highest component of γ-diversity. The shift transition had a negative effect on α, β and γ-diversity, primarily by impacting rare species, leading a group of small and less vulnerable fish species to become common and an important group of rare species to become locally extinct. The maintenance of fish heterogeneity (β-diversity) over time may imply the abetment of vulnerability in the face of local and global changes.

Numerical and Experimental Study on the Effect of Coral Reef and Beach Vegetation on Reduction of Long Wave Run-Up

NASA Astrophysics Data System (ADS)

Mohandie, R. K.; Teng, M. H.

2009-12-01

Numerical and experimental studies were carried out to examine the mitigating capabilities of coral reefs and vegetations on tsunami and storm surge inundation. For long waves propagating over variable depth such as that over a reef, the nonlinear and dispersive Boussinesq equations were applied. For run-up onto dry land where the nonlinear effect dominates, the nonlinear and nondispersive shallow water equations were used. Long waves with various amplitudes and wavelengths propagating over coral reefs of different length and height were investigated to quantify under which conditions a coral reef may be effective in reducing the wave impact. It was observed that a reef can make a long wave separate into several smaller waves and it can also cause wave breaking resulting in energy dissipation. Our data suggest that both wave separation and breaking induced by coral reefs are effective at mitigating long wave run-up, with the latter being noticeably more effective than the former. As expected, it was observed that the higher the coral reef height, the more the reduction in wave run-up especially when the reef height is greater than 50% of the water depth. For reefs to be effective as a barrier for long waves such as tsunamis and storm surges, it was found that the reefs must be sufficiently long in the wave propagation direction, for example, with its length to be at least of the same magnitude as the wavelength or longer. In this study, it was shown that an effective reef can reduce the long wave run-up by as much as 25% and 50% by wave separation and wave breaking, respectively. Three types of vegetation, namely, grass, shrub and coconut trees, were modeled and tested in a wave tank against various initial wave amplitude and beach slopes in the Hydraulics Lab at the University of Hawaii (UH) to examine each particular type’s effectiveness in reducing wave run-up and to determine its roughness coefficient for wave run-up through numerical simulation and experimental measurement. These roughness coefficients were shown to be higher than the traditional Manning’s coefficient values for vegetation in channel flows. Also, the coefficients were shown to be a function of the ratio of the initial wave amplitude over the vegetation height and are relatively independent of the beach slope. The vegetation spacing and tree diameters in the lab models were selected based on the typical spacing and tree diameter observed in the field through a reduced scale. All three types of vegetation were found to be effective in reducing wave run-up especially on mildly sloped beaches with a reduction rate ranging from 20% to more than 50%. A numerical simulation that incorporated the effects of coral reef and the combined vegetation types showed that on a 5 degree slope the reduction in run-up was 61% as compared to an unprotected scenario. A larger scale experimental study on coconut and bushes in the NSF-funded tsunami basin at the OSU also showed these vegetations are effective at reducing wave run-up. These results can be helpful in achieving a better understanding of the role that coral reefs and vegetation play in tsunami and storm surge mitigation.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cuffey, R.J.; Pachut, J.F.

The Holocene reef-building coral Favia pallida was sampled at 4.5 m depth increments (to 40 m) from two reefs on Enewetak Atoll to examine intraspecific environmental effects. An exposed outer reef was massive and wall-like, whereas a sheltered lagoonal reef grew as a slender pinnacle. Corallite diameter and growth rate, two attributes retrievable in fossil corals, were measured with data partitioned into shallow (<20 m), intermediate (20 to 29 m), and deep-water (>29 m) subsets. Highly significant differences between depth zone populations were found for both corallite diameters and growth rates in analyses of individual and combined reef data sets.more » Canonical variates analyses (CVA) separated populations from depth zones along single, highly significant, functions. Centroids and 95% confidence intervals, calculated from CVA scores of colonies in each population, are widely separated for the lagoon reef and combined data sets. Conversely, populations from shallow and intermediate depths on the outer reef display overlapping confidence bars indicative of more gradational morphologic changes. When CV's were used to classify specimens to groups, misassignments of intermediate depth specimens to shallow or deep-water populations underscored the gradational nature of the environment. Completely intergrading populations of Favia pallida collected from different depths can be morphologically separated into statistically distinct groupings. A stratigraphic succession of such morphotypes might be interpreted as abruptly appearing separate species if sampling were not as uniform, systematic, and detailed as was possible on modern reefs. Analyses of evolutionary patterns must carefully assess potential effects of clinal variation if past evolutionary patterns are to be interpreted correctly.« less

Origin and evolution of the Candlelight Reef-Sand Clay system, St. Croix.

USGS Publications Warehouse

Gerhard, L.C.

1981-01-01

Candlelight reef is the buttressing western terminus of the northeastern St. Croix reef system, caused by a combination of paleotopography and longshore drift which created a stable pile of detrital material at this position. Reef colonization proceeded eastward along the former slope break on the limestone terrace; turbid gyres along the eastern margin of the former Southgate drainage prevented further westward colonization. The presence of detrital cobbles in Sand Cay and Candlelight reef is explained by this model. An unconformity between underlying fine-grained quartzose rocks and overlying carbonates, need represent only an eustatic sea level rise rather than any fundamental tectonic event.-from Author

Unusually high coral recruitment during the 2016 El Niño in Mo'orea, French Polynesia.

PubMed

Edmunds, Peter J

2017-01-01

The negative implications of the thermal sensitivity of reef corals became clear with coral bleaching throughout the Caribbean in the 1980's, and later globally, with the severe El Niño of 1998 and extensive seawater warming in 2005. These events have substantially contributed to declines in coral cover, and therefore the El Niño of 2016 raised concerns over the implications for coral reefs; on the Great Barrier Reef these concerns have been realized. A different outcome developed in Mo'orea, French Polynesia, where in situ seawater temperature from 15 March 2016 to 15 April 2016 was an average of 0.4°C above the upper 95% CI of the decadal mean temperature, and the NOAA Degree Heating Weeks (DHW) metric supported a Level 1 bleaching alert (DHW ≥ 4.0). Starting 1 September 2016 and for the rest of the year (122 d), in situ seawater temperature was an average of 0.4°C above the 95% CI of long-term values, although DHW remained at zero. Minor coral bleaching (0.2-2.6% of the coral) occurred on the outer reef (10-m and 17-m depth) in April 2016, by May 2016 it had intensified to affect 1.3-16.8% of the coral, but by August 2016, only 1.4-3.0% of the coral was bleached. Relative to the previous decade, recruitment of scleractinians to settlement tiles on the outer- (10 m) and back- (2 m) reef over 2016/17 was high, both from January 2016 to August 2016, and from August 2016 to January 2017, with increased relative abundances of pocilloporids on the outer reef, and acroporids in the back reef. The 2016 El Niño created a distinctive signature in seawater temperature for Mo'orea, but it did not cause widespread coral bleaching or mortality, rather, it was associated with high coral recruitment. While the 2016 El Niño has negatively affected other coral reefs in the Indo-Pacific, the coral communities of Mo'orea continue to show signs of resilience, thus cautioning against general statements regarding the effects of the 2015/16 El Niño on coral reefs in the region.

Keeping up with sea-level rise: Carbonate production rates in Palau and Yap, western Pacific Ocean.

PubMed

van Woesik, Robert; Cacciapaglia, Christopher William

2018-01-01

Coral reefs protect islands from tropical storm waves and provide goods and services for millions of islanders worldwide. Yet it is unknown how coral reefs in general, and carbonate production in particular, will respond to sea-level rise and thermal stress associated with climate change. This study compared the reef-building capacity of different shallow-water habitats at twenty-four sites on each of two islands, Palau and Yap, in the western Pacific Ocean. We were particularly interested in estimating the inverse problem of calculating the value of live coral cover at which net carbonate production becomes negative, and whether that value varied across habitats. Net carbonate production varied among habitats, averaging 10.2 kg CaCO3 m-2 y-1 for outer reefs, 12.7 kg CaCO3 m-2 y-1 for patch reefs, and 7.2 kg CaCO3 m-2 y-1 for inner reefs. The value of live coral cover at which net carbonate production became negative varied across habitats, with highest values on inner reefs. These results suggest that some inner reefs tend to produce less carbonate, and therefore need higher coral cover to produce enough carbonate to keep up with sea-level rise than outer and patch reefs. These results also suggest that inner reefs are more vulnerable to sea-level rise than other habitats, which stresses the need for effective land-use practices as the climate continues to change. Averaging across all reef habitats, the rate of carbonate production was 9.7 kg CaCO3 m-2 y-1, or approximately 7.9 mm y-1 of potential vertical accretion. Such rates of vertical accretion are higher than projected averages of sea-level rise for the representative concentration pathway (RCP) climate-change scenarios 2.6, 4.5, and 6, but lower than for the RCP scenario 8.5.

Topographic control and accumulation rate of some Holocene coral reefs: south Florida and Dry Tortugas

USGS Publications Warehouse

Shinn, E.A.; Hudson, J.H.; Halley, R.B.; Lidz, B.H.; Taylor, D.L.

1977-01-01

Core drilling and examination of underwater excavation on 6 reef sites in south Florida and Dry Tortugas revealed that underlying topography is the major factor controlling reef morphology. Carbon-14 dating on coral recovered from cores enables calculation of accumulation rates. Accumulation rates were found to range from 0.38 m/1000 years in thin Holocene reefs to as much as 4.85 m/1000 years in thicker buildups. Cementation and alteration of corals were found to be more pronounced in areas of low buildup rates than in areas of rapid accumulation rates. Acropora palmata, generally considered the major reef builder in Florida, was found to be absent in most reefs drilled. At Dry Tortugas, the more than 13-meter thick Holocene reef did not contain A. palmata. The principal reef builders in this outer reef are the same as those which built the Pleistocene Key Largo formation, long considered to be fossilized patch reef complex.

Diving down the reefs? Intensive diving tourism threatens the reefs of the northern Red Sea.

PubMed

Hasler, Harald; Ott, Jörg A

2008-10-01

Intensive recreational SCUBA diving threatens coral reef ecosystems. The reefs at Dahab, South Sinai, Egypt, are among the world's most dived (>30,000 dives y(-1)). We compared frequently dived sites to sites with no or little diving. Benthic communities and condition of corals were examined by the point intercept sampling method in the reef crest zone (3m) and reef slope zone (12 m). Additionally, the abundance of corallivorous and herbivorous fish was estimated based on the visual census method. Sediments traps recorded the sedimentation rates caused by SCUBA divers. Zones subject to intensive SCUBA diving showed a significantly higher number of broken and damaged corals and significantly lower coral cover. Reef crest coral communities were significantly more affected than those of the reef slope: 95% of the broken colonies were branching ones. No effect of diving on the abundance of corallivorous and herbivorous fish was evident. At heavily used dive sites, diver-related sedimentation rates significantly decreased with increasing distance from the entrance, indicating poor buoyancy regulation at the initial phase of the dive. The results show a high negative impact of current SCUBA diving intensities on coral communities and coral condition. Corallivorous and herbivorous fishes are apparently not yet affected, but are endangered if coral cover decline continues. Reducing the number of dives per year, ecologically sustainable dive plans for individual sites, and reinforcing the environmental education of both dive guides and recreational divers are essential to conserve the ecological and the aesthetic qualities of these dive sites.

Mapping Mesophotic Reefs Along the Brazilian Continental Margin

NASA Astrophysics Data System (ADS)

Bastos, A.; Moura, R.; Amado Filho, G.; Ferreira, L.; Boni, G.; Vedoato, F.; D'Agostini, D.; Lavagnino, A. C.; Leite, M. D.; Quaresma, V.

2017-12-01

Submerged or drowned reefs constitute an important geological record of sea level variations, forming the substrate for the colonization of modern benthic mesophotic communities. Although mapping mesophotic reefs has increased in the last years, their spatial distribution is poorly known and the worldwide occurrence of this reef habitat maybe underestimated. The importance in recognizing the distribution of mesophotic reefs is that they can act as a refuge for corals during unsuitable environmental conditions and a repository for shallow water corals. Here we present the result of several acoustic surveys that mapped and discovered new mesophotic reefs along the Eastern and Equatorial Brazilian Continental Margin. Seabed mapping was carried out using multibeam and side scan sonars. Ground truthing was obtained using drop camera or scuba diving. Mesophotic reefs were mapped in water depths varying from 30 to 100m and under distinct oceanographic conditions, especially in terms of river load input and shelf width. Reefs showed distinct morphologies, from low relief banks and paleovalleys to shelf edge ridges. Extensive occurrence of low relief banks were mapped along the most important coralline complex province in the South Atlantic, the Abrolhos Shelf. These 30 to 40m deep banks, have no more than 3 meters in height and may represent fringing reefs formed during sea level stabilization. Paleovalleys mapped along the eastern margin showed the occurrence of coralgal ledges along the channel margins. Paleovalleys are usually deeper than 45m and are associated with outer shelf rhodolith beds. Shelf edge ridges (80 to 120m deep) were mapped along both margins and are related to red algal encrusting irregular surfaces that have more than 3m in height, forming a rigid substrate for coral growth. Along the Equatorial Margin, off the Amazon mouth, shelf edge patch reefs and rhodolith beds forming encrusting surfaces and shelf edge ridges were mapped in water depths greater than 100m. Thus, the occurrence of mesophotic reefs along the Brazilian Margin is influenced by transgressive morphological features, which could be used as a surrogate for mesophotic reef distribution. The extensive occurrence of rhodolith beds on the outer shelf characterizes most of these reefs.

Axial flow positive displacement worm compressor

NASA Technical Reports Server (NTRS)

Murrow, Kurt David (Inventor); Giffin, Rollin George (Inventor); Fakunle, Oladapo (Inventor)

2010-01-01

An axial flow positive displacement compressor has an inlet axially spaced apart and upstream from an outlet. Inner and outer bodies have offset inner and outer axes extend from the inlet to the outlet through first and second sections of a compressor assembly in serial downstream flow relationship. At least one of the bodies is rotatable about its axis. The inner and outer bodies have intermeshed inner and outer helical blades wound about the inner and outer axes respectively. The inner and outer helical blades extend radially outwardly and inwardly respectively. The helical blades have first and second twist slopes in the first and second sections respectively. The first twist slopes are less than the second twist slopes. An engine including the compressor has in downstream serial flow relationship from the compressor a combustor and a high pressure turbine drivingly connected to the compressor by a high pressure shaft.

Complementarity of Rotating Video and Underwater Visual Census for Assessing Species Richness, Frequency and Density of Reef Fish on Coral Reef Slopes

PubMed Central

Mallet, Delphine; Wantiez, Laurent; Lemouellic, Soazig; Vigliola, Laurent; Pelletier, Dominique

2014-01-01

Estimating diversity and abundance of fish species is fundamental for understanding community structure and dynamics of coral reefs. When designing a sampling protocol, one crucial step is the choice of the most suitable sampling technique which is a compromise between the questions addressed, the available means and the precision required. The objective of this study is to compare the ability to sample reef fish communities at the same locations using two techniques based on the same stationary point count method: one using Underwater Visual Census (UVC) and the other rotating video (STAVIRO). UVC and STAVIRO observations were carried out on the exact same 26 points on the reef slope of an intermediate reef and the associated inner barrier reefs. STAVIRO systems were always deployed 30 min to 1 hour after UVC and set exactly at the same place. Our study shows that; (i) fish community observations by UVC and STAVIRO differed significantly; (ii) species richness and density of large species were not significantly different between techniques; (iii) species richness and density of small species were higher for UVC; (iv) density of fished species was higher for STAVIRO and (v) only UVC detected significant differences in fish assemblage structure across reef type at the spatial scale studied. We recommend that the two techniques should be used in a complementary way to survey a large area within a short period of time. UVC may census reef fish within complex habitats or in very shallow areas such as reef flat whereas STAVIRO would enable carrying out a large number of stations focused on large and diver-averse species, particularly in the areas not covered by UVC due to time and depth constraints. This methodology would considerably increase the spatial coverage and replication level of fish monitoring surveys. PMID:24392126

Book review of Littler DM. Littler MM (2000) Caribbean Reef Plants An Identification Guide to the Reef Plants of the Caribbean, Bahamas, Florida and Gulf of Mexico

NASA Astrophysics Data System (ADS)

Zuschin, M.; Hohenegger, J.; Steininger, F.

2001-09-01

Information on spatial variability and distribution patterns of organisms in coral reef environments is necessary to evaluate the increasing anthropogenic disturbance of marine environments (Richmond 1993; Wilkinson 1993; Dayton 1994). Therefore different types of subtidal, reef-associated hard substrata (reef flats, reef slopes, coral carpets, coral patches, rock grounds), each with different coral associations, were investigated to determine the distribution pattern of molluscs and their life habits (feeding strategies and substrate relations). The molluscs were strongly dominated by taxa with distinct relations to corals, and five assemblages were differentiated. The Dendropoma maxima assemblage on reef flats is a discrete entity, strongly dominated by this encrusting and suspension-feeding gastropod. All other assemblages are arranged along a substrate gradient of changing coral associations and potential molluscan habitats. The Coralliophila neritoidea- Barbatia foliata assemblage depends on the presence of Porites and shows a dominance of gastropods feeding on corals and of bivalves associated with living corals. The Chamoidea- Cerithium spp. assemblage on rock grounds is strongly dominated by encrusting bivalves. The Drupella cornus-Pteriidae assemblage occurs on Millepora- Acropora reef slopes and is strongly dominated by bivalves associated with living corals. The Barbatia setigera- Ctenoides annulata assemblage includes a broad variety of taxa, molluscan life habits and bottom types, but occurs mainly on faviid carpets and is transitional among the other three assemblages. A predicted degradation of coral coverage to rock bottoms due to increasing eutrophication and physical damage in the study area (Riegl and Piller 2000) will result in a loss of coral-associated molluscs in favor of bivalve crevice dwellers in dead coral heads and of encrusters on dead hard substrata.

Geology of the d'Entrecasteaux-New Hebrides arc collision zone: results from a deep submersible survey

USGS Publications Warehouse

Collot, J.-Y.; Lallemand, S.; Pelletier, B.; Bissen, J.-P.; Glacon, G.; Fisher, M.A.; Greene, H. Gary; Boulin, J.; Daniel, J.; Monzier, M.

1992-01-01

During the SUBPSO1 cruise, seven submersible dives were conducted between water depths of 5350 and 900 m over the collision zone between the New Hebrides island arc and the d'Entrecasteaux Zone (DEZ). The DEZ, a topographic high on the Australian plate, encompasses the North d'Entrecasteaux Ridge (NDR) and the Bougainville guyot, both of which collide with the island-are slope. In this report we use diving observations and samples, as well as dredging results, to analyse the geology of the Bougainville guyot and the outer arc slope in the DEZ-arc collision zone, and to decipher the mechanisms of scamount subduction. These data indicate that the Bougainville guyot is a middle Eocene island arc volcano capped with reef limestones that appear to have been deposited during the Late Oligocene to Early Miocene and in Miocene-Pliocene times. This guyot possibly emerged during the Middle and Late Miocene, and started to sink in the New Hebrides trench after the Pliocene. The rocks of the New Hebrides arc slope, in the collision zone, consist primarily of Pliocene-Recent volcaniclastic rocks derived from the arc, and underlying fractured island-arc volcanic basement, possibly of Late Miocene age. However, highly sheared, Upper Oligocene to Lower Miocene nannofossil ooze and chalk are exposed at the toe of the arc slope against the northern flank of the NDR. Based on a comparison with cores collected at DSDP Site 286, the ooze and chalk can be interpreted as sediments accreted from the downgoing plate. East of the Bougainville guyot an antiform that developed in the arc slope as a consequence of the collision reveals a 500-m-thick wedge of strongly tectonized rocks, possibly accreted from the guyot or an already subducted seamount. The wedge that is overlain by less deformed volcaniclastic island-arc rocks and sediments includes imbricated layers of Late Oligocene to Early Miocene reef and micritic limestones. This wedge, which develops against the leading flank of the guyot, tends to smooth its high-drag shape. A comparison between the 500-m-thick wedge of limestones that outcrops southeast of the guyot and the absence of such a wedge over the flat top of the guyot, although the top is overthrust by island-arc rocks and sediments, can be interpreted to suggest that the wedge moves in the subduction zone with the guyot and facilitates its subduction by streamlining. ?? 1992.

Quantifying Water Flow within Aquatic Ecosystems Using Load Cell Sensors: A Profile of Currents Experienced by Coral Reef Organisms around Lizard Island, Great Barrier Reef, Australia

PubMed Central

Johansen, Jacob L.

2014-01-01

Current velocity in aquatic environments has major implications for the diversity, abundance and ecology of aquatic organisms, but quantifying these currents has proven difficult. This study utilises a simple and inexpensive instrument (<$150) to provide a detailed current velocity profile of the coral-reef system around Lizard Island (Great Barrier Reef, Australia) at a spatial and temporal scale relevant to the ecology of individual benthos and fish. The instrument uses load-cell sensors to provide a correlation between sensor output and ambient current velocity of 99%. Each instrument is able to continuously record current velocities to >500 cms−1 and wave frequency to >100 Hz over several weeks. Sensor data are registered and processed at 16 MHz and 10 bit resolution, with a measuring precision of 0.06±0.04%, and accuracy of 0.51±0.65% (mean ±S.D.). Each instrument is also pressure rated to 120 m and shear stresses ≤20 kNm−2 allowing deployment in harsh environments. The instrument was deployed across 27 coral reef sites covering the crest (3 m), mid-slope (6 m) and deep-slope (9 m depth) of habitats directly exposed, oblique or sheltered from prevailing winds. Measurements demonstrate that currents over the reef slope and crest varies immensely depending on depth and exposure: Currents differ up to 9-fold within habitats only separated by 3 m depth and 15-fold between exposed, oblique and sheltered habitats. Comparisons to ambient weather conditions reveal that currents around Lizard Island are largely wind driven. Zero to 22.5 knot winds correspond directly to currents of 0 to >82 cms−1, while tidal currents rarely exceed 5.5 cms−1. Rather, current velocity increases exponentially as a function of wave height (0 to 1.6 m) and frequency (0.54 to 0.20 Hz), emphasizing the enormous effect of wind and waves on organisms in these shallow coral reef habitats. PMID:24421878

Quantifying water flow within aquatic ecosystems using load cell sensors: a profile of currents experienced by coral reef organisms around Lizard Island, Great Barrier Reef, Australia.

PubMed

Johansen, Jacob L

2014-01-01

Current velocity in aquatic environments has major implications for the diversity, abundance and ecology of aquatic organisms, but quantifying these currents has proven difficult. This study utilises a simple and inexpensive instrument (<$150) to provide a detailed current velocity profile of the coral-reef system around Lizard Island (Great Barrier Reef, Australia) at a spatial and temporal scale relevant to the ecology of individual benthos and fish. The instrument uses load-cell sensors to provide a correlation between sensor output and ambient current velocity of 99%. Each instrument is able to continuously record current velocities to >500 cms⁻¹ and wave frequency to >100 Hz over several weeks. Sensor data are registered and processed at 16 MHz and 10 bit resolution, with a measuring precision of 0.06±0.04%, and accuracy of 0.51±0.65% (mean ±S.D.). Each instrument is also pressure rated to 120 m and shear stresses ≤20 kNm⁻² allowing deployment in harsh environments. The instrument was deployed across 27 coral reef sites covering the crest (3 m), mid-slope (6 m) and deep-slope (9 m depth) of habitats directly exposed, oblique or sheltered from prevailing winds. Measurements demonstrate that currents over the reef slope and crest varies immensely depending on depth and exposure: currents differ up to 9-fold within habitats only separated by 3 m depth and 15-fold between exposed, oblique and sheltered habitats. Comparisons to ambient weather conditions reveal that currents around Lizard Island are largely wind driven. Zero to 22.5 knot winds correspond directly to currents of 0 to >82 cms⁻¹, while tidal currents rarely exceed 5.5 cms⁻¹. Rather, current velocity increases exponentially as a function of wave height (0 to 1.6 m) and frequency (0.54 to 0.20 Hz), emphasizing the enormous effect of wind and waves on organisms in these shallow coral reef habitats.

Controls on reef development and the terrigenous-carbonate interface on a shallow shelf, Nicaragua (Central America)

NASA Astrophysics Data System (ADS)

Roberts, H. H.; Murray, S. P.

1983-06-01

Marine geology and physical oceanographic data collected during two field projects (˜4 months) on the Caribbean shelf of Nicaragua indicate a surprising dominance of carbonate deposition and reef growth on a shelf that is receiving an abnormally large volume of terrigenous sediments. High rainfall rates (˜400 500 cm/year), coupled with a warm tropical climate, encourage rapid denudation of the country's central volcanic highland and transport of large volumes of terrigenous sediment and fresh water to the coast. Estimates suggest that three times more fresh water and fifteen times more sediment are introduced per unit length of coastline than on the east coast of the United States. Distribution of the terrigenous facies, development of carbonate sediment suites, and the location and quality of viable reefs are strongly controlled by the dynamic interaction near the coasts of highly turbid fresh to brackish water effluents from thirteen rivers with clear marine waters of the shelf. Oceanic water from the central Caribbean drift current intersects the shelf and moves slowely in a dominant northwest direction toward the Yucatan Channel. A sluggish secondary gyre moves to the south toward Costa Rica. In contrast, the turbid coastal water is deflected to the south in response to density gradients, surface water slopes, and momentum supplied by the steady northeast trade winds. A distinct two-layered flow is commonly present in the sediment-rich coastal boundary zone, which is typically 10 20 km wide. The low-salinity upper layer is frictionally uncoupled from the ambient shelf water and therefore can expand out of the normally coherent coastal boundary zone during periods of abnormal flooding or times when instability is introduced into the northeast trades. Reef distribution, abruptness of the terrigenous-carbonate interface, and general shelf morphology reflect the long-term dynamic structure of the shelf waters. A smooth-bottomed ramp of siliciclastic sands to silts and clays mantles the inner shelf floor in a linear belt paralleling the coast. This belt generally corresponds to the western flank of the coastal boundary zone. Occurrence of reefs is generally confined to areas outside this zone. Terrigenous clays and silts of the inner shelf are abruptly (<20 km from the coast) replaced by Halimeda-rich sediment of the middle and outer shelf. Within the carbonate facies belt, reef complexes thrive as small, isolated masses; large, reef-capped platforms; reef fringes around islands; and shelfedge structures with vertical relief that can exceed 25 m. In general, the frequency and proliferation of reefs increase away from the turbid coastal boundary layer and toward the cooler and saltier water that upwells at the shelf margin.

Predictable spatial escapes from herbivory: how do these affect the evolution of herbivore resistance in tropical marine communities?

PubMed

Hay, Mark E

1984-11-01

Between-habitat differences in macrophyte consumption by herbivorous fishes were examined on three Caribbean and two Indian Ocean coral reefs. Transplanted sections of seagrasses were used as a bioassay to compare removal rates in reef-slope, reef-flat, sand-plain, and lagoon habitats. Herbivore susceptibility of fifty-two species of seaweeds from these habitats was also measured in the field. Seagrass consumption on shallow reef slopes was always significantly greater than on shallow reef flats, deep sand plains, or sandy lagoons. Reef-slope seaweeds were consistently resistant to herbivory while reef-flat seaweeds were consistently very susceptible to herbivory. This pattern supports the hypothesis that defenses against herbivores are costly in terms of fitness and are selected against in habitats with predictably low rates of herbivory.Sand-plain and lagoon seaweeds showed a mixed response when placed in habitats with high herbivore pressure; most fleshy red seaweeds were eaten rapidly, most fleshy green seaweeds were eaten at intermediate rates, and most calcified green seaweeds were avoided or eaten at very low rates. Differences in susceptibility between red and green seaweeds from sand-plain or lagoon habitats may result from differential competitive pressures experienced by these seaweed groups or from the differential probability of being encountered by herbivores. The susceptibility of a species to removal by herbivorous fishes was relatively consistent between reefs. Preferences of the sea urchin Diadema antillarum were also similar to those of the fish guilds.Unique secondary metabolites were characteristic of almost all of the most herbivore resistant seaweeds. However, some of the herbivore susceptible species also contain chemicals that have been proposed as defensive compounds. Genera such as Sargassum, Turbinaria, Thalassia, Halodule, and Thalassodendron, which produce polyphenolics or phenolic acids, were consumed at high to intermediate rates, suggesting that these compounds are not effective deterrents for some herbivorous fishes. Additionally, potential for the production of the compounds caulerpin, caulerpicin and caulerpenyne in various species of Caulerpa did not assure low susceptibility to herbivory.Heavily calcified seaweeds were very resistant to herbivory, but all of these species also produce toxic secondary metabolites which makes it difficult to distinguish between the effects of morphological and chemical defenses. Predictions of susceptibility to herbivory based on algal toughness and external morphology were of limited value in explaining differing resistances to herbivory.

A regional assessment of potential environmental hazards to and limitations on petroleum development of the Southeastern United States Atlantic continental shelf, slope, and rise, offshore North Carolina

USGS Publications Warehouse

Popenoe, Peter; Coward, E.L.; Cashman, K.V.

1982-01-01

More than 11,000 km of high-resolution seismic-reflection data, 325 km of mid-range sidescan-sonar data, and 500 km of long-range sidescan-sonar data were examined and used to construct an environmental geology map of the Continental Shelf, Slope, and Rise for the area of the U.S. Atlantic margin between lats. 32?N. and 37?N. Hardgrounds and two faults described in previous literature also are shown on the map. On the Continental Shelf, at least two faults, the Helena Banks fault and the White Oak lineament, appear to be tectonic in origin. However, a lack of historical seismicity associated with these faults indicates that they are probably not active at the present time. Hardgrounds are widely scattered but are most abundant in Onslow Bay. Although paleostream channels are common nearshore, they do not appear to be common on the central and outer shelf except off Albemarle Sound where extensive Pleistocene, Pliocene, and late Miocene channels extend across the shelf. Mobile bottom sediments are confined mainly to the shoals off Cape Romain, Cape Fear, Cape Lookout, and Cape Hatteras. Elsewhere the sand cover is thin, and older more indurated rocks are present in subcrop. No slope-instability features were noted on the Florida-Hatteras slope off North Carolina. The lack of features indicates that this slope is relatively stable. Evidence for scour by strong currents is ubiquitous on the northern Blake Plateau although deep-water reefs are sparse. The outer edge of the plateau is dominated by a major growth fault and numerous splay and antithetic faults. These faults are the product of salt tectonism in the Carolina trough and thus are not associated with seismicity. Displacements observed near the sea floor and breached diapirs offshore indicate that the main fault is still moving. Associated with the faults are collapse features that are interpreted to be caused by karst solution and cavernous porosity in Eocene and Oligocene limestones at depth. Major slumps have taken place in two large areas of the Continental Slope. Seismic-reflection profiles of the southern area, centered on the lower slope at 1at. 33?N., long. 76?W., show a 80-m-hlgh scarp in which bedding has been truncated. Rotational slump faults are present in this area on the middle and upper slope. Sidescan images show that large blocks have slid downslope from the scarp face, furrowing the bottom. High-resolution (3.5-kHz) records show that the rotational slump faults upslope are active. The association of these slumps and the scarps with salt diapirs suggests subsidence accompanying salt tectonism as the cause. Seismic-reflection records over the northern area, at about fat. 36?20'N., long. 74?40'W., show two steep scarps, each about 225 m high on the upper and middle-slope. These slump scars and an absence of Pleistocene sediments indicate that large blocks of the slope have been removed by slumping. The slope north of fat. 35?N. is highly dissected by canyons. Mid-range sidescan-sonar records suggest that the canyons are the product of mass wasting and have probably formed largely by slumping. Sediments in a wide zone on the upper rise are highly disturbed and faulted owing to salt tectonism. Twenty-six salt diapirs are mapped, as is a zone of disturbed bottom related to salt tectonism. An area of frozen bottom (clathrate) under which shallow free gas is trapped underlies the outer Blake Plateau, the slope, and the upper rise. Although the hazards of drilling into or through clathrates have not been tested, the release of gas from beneath this frozen layer may prove to be a primary hazard to exploration.

Dongsha Atoll: A potential thermal refuge for reef-building corals in the South China Sea.

PubMed

Tkachenko, Konstantin S; Soong, Keryea

2017-06-01

Dongsha Atoll (also known as the Pratas Islands), the northernmost atoll in the South China Sea, experiences two contrasting physical phenomena: repetitive anomalies of the sea surface temperature exceeding the coral bleaching threshold and regular effects of the world's strongest internal waves resulting in the rhythmic upwelling of cold deep waters at the outer reef slopes of the atoll. This unique combination may result in significant differences in coral species composition and structure between the lagoon and forereef. Surveys conducted in August-September 2016 at 12 study sites in the 2-15 m depth range at Dongsha Atoll revealed a clear spatial separation between 'thermally-susceptible' stony coral genera, including Acropora, Pocillopora and Montipora, which mainly inhabited the forereef, and 'thermally-resistant' genera, including massive Porites, foliaceous Echinopora, Pavona and Turbinaria, which mainly resided in the lagoon. The mean coral cover and species richness on the forereef were respectively 1.8 and 1.4 times higher than those in the lagoon (61.3% and 98 species on the forereef vs. 34.2% and 69 species in the lagoon). Coral mortality rates, expressed as the ratio of dead to live stony corals, showed the same pattern (0.4 in the lagoon vs. 0.009 on the forereef). Furthermore, in a laboratory experiment, 'thermally-susceptible' taxa from the lagoon, (e.g. Pocillopora verrucosa and P. damicornis), exhibited higher resistance to bleaching than did their counterparts from the forereef. The present findings indicate that Dongsha Atoll is a potential thermal refuge for reef-building corals in the northern South China Sea and reveal the development of resilience and resistance to bleaching in coral communities of the lagoon. Copyright © 2017 Elsevier Ltd. All rights reserved.

Passive acoustic telemetry reveals highly variable home range and movement patterns among unicornfish within a marine reserve

NASA Astrophysics Data System (ADS)

Marshell, A.; Mills, J. S.; Rhodes, K. L.; McIlwain, J.

2011-09-01

Marine reserves are the primary management tool for Guam's reef fish fishery. While a build-up of fish biomass has occurred inside reserve boundaries, it is unknown whether reserve size matches the scale of movement of target species. Using passive acoustic telemetry, we quantified movement patterns and home range size of two heavily exploited unicornfish Naso unicornis and Naso lituratus. Fifteen fish ( N. unicornis: n = 7; N. lituratus: n = 4 male, n = 4 female) were fitted with internal acoustic tags and tracked continuously over four months within a remote acoustic receiver array located in a decade-old marine reserve. This approach provided robust estimates of unicornfish movement patterns and home range size. The mean home range of 3.2 ha for N. unicornis was almost ten times larger than that previously recorded from a three-week tracking study of the species in Hawaii. While N. lituratus were smaller in body size, their mean home range (6.8 ha) was over twice that of N. unicornis. Both species displayed strong site fidelity, particularly during nocturnal and crepuscular periods. Although there was some overlap, individual movement patterns and home range size were highly variable within species and between sexes. N. unicornis home range increased with body size, and only the three largest fish home ranges extended into the deeper outer reef slope beyond the shallow reef flat. Both Naso species favoured habitat dominated by corals. Some individuals made predictable daily crepuscular migrations between different locations or habitat types. There was no evidence of significant spillover from the marine reserve into adjacent fished areas. Strong site fidelity coupled with negligible spillover suggests that small-scale reserves, with natural habitat boundaries to emigration, are effective in protecting localized unicornfish populations.

Great Barrier Reef, Australia

NASA Image and Video Library

1996-01-20

STS072-727-085 (11-20 Jan. 1996) --- The northern third of the Great Barrier Reef stretches 650 kilometers (km) along the coast of Queensland from south of Cairns to past Princess Charlotte Bay at the base of the Cape York Peninsula. The predominant westerly waves of the ocean create shallower (lighter-colored) convex-eastward rims to coral atolls along the outer edge of the barrier reef. In contrast, islands within the lagoon show the effect of predominant southerly, more-or-less offshore winds. Arcuate clouds suggest that winds were offshore at the time the photograph was taken.

Scleractinian corals (Fungiidae, Agariciidae and Euphylliidae) of Pulau Layang-Layang, Spratly Islands, with a note on Pavona maldivensis (Gardiner, 1905)

PubMed Central

Waheed, Zarinah; Benzoni, Francesca; van der Meij, Sancia E.T.; Terraneo, Tullia I.; Hoeksema, Bert W.

2015-01-01

Abstract Layang-Layang is a small island part of an oceanic atoll in the Spratly Islands off Sabah, Malaysia. As the reef coral fauna in this part of the South China Sea is poorly known, a survey was carried out in 2013 to study the species composition of the scleractinian coral families Fungiidae, Agariciidae and Euphylliidae. A total of 56 species was recorded. The addition of three previously reported coral species brings the total to 59, consisting of 32 Fungiidae, 22 Agariciidae, and five Euphylliidae. Of these, 32 species are new records for Layang-Layang, which include five rarely reported species, i.e., the fungiids Lithophyllon ranjithi, Podabacia sinai, Sandalolitha boucheti, and the agariciids Leptoseris kalayaanensis and Leptoseris troglodyta. The coral fauna of Layang-Layang is poor compared to other areas in Sabah, which may be related to its recovery from a crown-of-thorns seastar outbreak in 2010, and its low habitat diversity, which is dominated by reef slopes consisting of steep outer walls. Based on integrative molecular and morphological analyses, a Pavona variety with small and extremely thin coralla was revealed as Pavona maldivensis. Since specimens from Sabah previously identified as Pavona maldivensis were found to belong to Pavona explanulata, the affinities and distinctions of Pavona maldivensis and Pavona explanulata are discussed. PMID:26312025

Molluscan assemblages on coral reefs and associated hard substrata in the northern Red Sea

NASA Astrophysics Data System (ADS)

Zuschin, M.; Hohenegger, J.; Steininger, F.

2001-09-01

Information on spatial variability and distribution patterns of organisms in coral reef environments is necessary to evaluate the increasing anthropogenic disturbance of marine environments (Richmond 1993; Wilkinson 1993; Dayton 1994). Therefore different types of subtidal, reef-associated hard substrata (reef flats, reef slopes, coral carpets, coral patches, rock grounds), each with different coral associations, were investigated to determine the distribution pattern of molluscs and their life habits (feeding strategies and substrate relations). The molluscs were strongly dominated by taxa with distinct relations to corals, and five assemblages were differentiated. The Dendropoma maxima assemblage on reef flats is a discrete entity, strongly dominated by this encrusting and suspension-feeding gastropod. All other assemblages are arranged along a substrate gradient of changing coral associations and potential molluscan habitats. The Coralliophila neritoidea- Barbatia foliata assemblage depends on the presence of Porites and shows a dominance of gastropods feeding on corals and of bivalves associated with living corals. The Chamoidea- Cerithium spp. assemblage on rock grounds is strongly dominated by encrusting bivalves. The Drupella cornus-Pteriidae assemblage occurs on Millepora- Acropora reef slopes and is strongly dominated by bivalves associated with living corals. The Barbatia setigera- Ctenoides annulata assemblage includes a broad variety of taxa, molluscan life habits and bottom types, but occurs mainly on faviid carpets and is transitional among the other three assemblages. A predicted degradation of coral coverage to rock bottoms due to increasing eutrophication and physical damage in the study area (Riegl and Piller 2000) will result in a loss of coral-associated molluscs in favor of bivalve crevice dwellers in dead coral heads and of encrusters on dead hard substrata.

The influence of sea-level rise on fringing reef sediment dynamics: field observations and numerical modeling

USGS Publications Warehouse

Storlazzi, Curt D.; Field, Michael E.; Elias, Edwin; Presto, M. Katherine

2011-01-01

While most climate projections suggest that sea level may rise on the order of 0.5-1.0 m by 2100, it is not clear how fluid flow and sediment transport on fringing reefs might change in response to this rapid sea-level rise. Field observations and numerical modeling suggest that an increase in water depth on the order of 0.5-1.0 m on a fringing reef flat would result in larger significant wave heights and wave-driven shear stresses, which, in turn, would result in an increase in both the size and quantity of sediment that can be resuspended from the seabed or eroded from coastal plain deposits. Greater wave- and wind-driven currents would develop on the reef flat with increasing water depth, increasing the offshore flux of water and sediment from the inner reef flat to the outer reef flat and fore reef where coral growth is typically greatest.

Locomotion in labrid fishes: implications for habitat use and cross-shelf biogeography on the Great Barrier Reef

NASA Astrophysics Data System (ADS)

Bellwood, D.; Wainwright, P.

2001-09-01

Coral reefs exhibit marked zonation patterns within single reefs and across continental shelves. For sessile organisms these zones are often related to wave exposure. We examined the extent to which wave exposure may shape the distribution patterns of fishes. We documented the distribution of 98 species of wrasses and parrotfishes at 33 sites across the Great Barrier Reef. The greatest difference between labrid assemblages was at the habitat level, with exposed reef flats and crests on mid- and outer reefs possessing a distinct faunal assemblage. These exposed sites were dominated by individuals with high pectoral fin aspect ratios, i.e. fishes believed to be capable of lift-based swimming which often achieve high speeds. Overall, there was a strong correlation between estimated swimming performance, as indicated by fin aspect ratio, and degree of water movement. We propose that swimming performance in fishes limits access to high-energy locations and may be a significant factor influencing habitat use and regional biogeography of reef fishes.

The influence of coral reefs and climate change on wave-driven flooding of tropical coastlines

NASA Astrophysics Data System (ADS)

Quataert, Ellen; Storlazzi, Curt; Rooijen, Arnold; Cheriton, Olivia; Dongeren, Ap

2015-08-01

A numerical model, XBeach, calibrated and validated on field data collected at Roi-Namur Island on Kwajalein Atoll in the Republic of Marshall Islands, was used to examine the effects of different coral reef characteristics on potential coastal hazards caused by wave-driven flooding and how these effects may be altered by projected climate change. The results presented herein suggest that coasts fronted by relatively narrow reefs with steep fore reef slopes (~1:10 and steeper) and deeper, smoother reef flats are expected to experience the highest wave runup. Wave runup increases for higher water levels (sea level rise), higher waves, and lower bed roughness (coral degradation), which are all expected effects of climate change. Rising sea levels and climate change will therefore have a significant negative impact on the ability of coral reefs to mitigate the effects of coastal hazards in the future.

The influence of coral reefs and climate change on wave-driven flooding of tropical coastlines

USGS Publications Warehouse

Quataert, Ellen; Storlazzi, Curt; van Rooijen, Arnold; van Dongeren, Ap; Cheriton, Olivia

2015-01-01

A numerical model, XBeach, calibrated and validated on field data collected at Roi-Namur Island on Kwajalein Atoll in the Republic of Marshall Islands, was used to examine the effects of different coral reef characteristics on potential coastal hazards caused by wave-driven flooding and how these effects may be altered by projected climate change. The results presented herein suggest that coasts fronted by relatively narrow reefs with steep fore reef slopes (~1:10 and steeper) and deeper, smoother reef flats are expected to experience the highest wave runup. Wave runup increases for higher water levels (sea level rise), higher waves, and lower bed roughness (coral degradation), which are all expected effects of climate change. Rising sea levels and climate change will therefore have a significant negative impact on the ability of coral reefs to mitigate the effects of coastal hazards in the future.

Calcification rates of the massive coral Siderastrea siderea and crustose coralline algae along the Florida Keys (USA) outer-reef tract

USGS Publications Warehouse

Kuffner, I.B.; Hickey, T.D.; Morrison, J.M.

2013-01-01

Coral reefs are degrading on a global scale, and rates of reef-organism calcification are predicted to decline due to ocean warming and acidification. Systematic measurements of calcification over space and time are necessary to detect change resulting from environmental stressors. We established a network of calcification monitoring stations at four managed reefs along the outer Florida Keys Reef Tract (FKRT) from Miami to the Dry Tortugas. Eighty colonies (in two sequential sets of 40) of the reef-building coral, Siderastrea siderea, were transplanted to fixed apparatus that allowed repetitive detachment for buoyant weighing every 6 months. Algal-recruitment tiles were also deployed during each weighing interval to measure net calcification of the crustose coralline algal (CCA) community. Coral-calcification rates were an order of magnitude greater than those of CCA. Rates of coral calcification were seasonal (summer calcification was 53% greater than winter), and corals in the Dry Tortugas calcified 48% faster than those at the other three sites. Linear extension rates were also highest in the Dry Tortugas, whereas percent area of the coral skeletons excavated by bioeroding fauna was lowest. The spatial patterns in net coral calcification revealed here correlate well with Holocene reef thickness along the FKRT and, in part, support the “inimical waters hypothesis” proposed by Ginsburg, Hudson, and Shinn almost 50 yrs ago to explain reef development in this region. Due to the homogeneity in coral-calcification rates among the three main Keys sites, we recommend refinement of this hypothesis and suggest that water-quality variables (e.g., carbonate mineral saturation state, dissolved and particulate organic matter, light attenuation) be monitored alongside calcification in future studies. Our results demonstrate that our calcification monitoring network presents a feasible and worthwhile approach to quantifying potential impacts of ocean acidification, warming, and/or deteriorating water quality on the process of calcification.

Calcification rates of the massive coral Siderastrea siderea and crustose coralline algae along the Florida Keys (USA) outer-reef tract

NASA Astrophysics Data System (ADS)

Kuffner, I. B.; Hickey, T. D.; Morrison, J. M.

2013-12-01

Coral reefs are degrading on a global scale, and rates of reef-organism calcification are predicted to decline due to ocean warming and acidification. Systematic measurements of calcification over space and time are necessary to detect change resulting from environmental stressors. We established a network of calcification monitoring stations at four managed reefs along the outer Florida Keys Reef Tract (FKRT) from Miami to the Dry Tortugas. Eighty colonies (in two sequential sets of 40) of the reef-building coral, Siderastrea siderea, were transplanted to fixed apparatus that allowed repetitive detachment for buoyant weighing every 6 months. Algal-recruitment tiles were also deployed during each weighing interval to measure net calcification of the crustose coralline algal (CCA) community. Coral-calcification rates were an order of magnitude greater than those of CCA. Rates of coral calcification were seasonal (summer calcification was 53 % greater than winter), and corals in the Dry Tortugas calcified 48 % faster than those at the other three sites. Linear extension rates were also highest in the Dry Tortugas, whereas percent area of the coral skeletons excavated by bioeroding fauna was lowest. The spatial patterns in net coral calcification revealed here correlate well with Holocene reef thickness along the FKRT and, in part, support the "inimical waters hypothesis" proposed by Ginsburg, Hudson, and Shinn almost 50 yrs ago to explain reef development in this region. Due to the homogeneity in coral-calcification rates among the three main Keys sites, we recommend refinement of this hypothesis and suggest that water-quality variables (e.g., carbonate mineral saturation state, dissolved and particulate organic matter, light attenuation) be monitored alongside calcification in future studies. Our results demonstrate that our calcification monitoring network presents a feasible and worthwhile approach to quantifying potential impacts of ocean acidification, warming, and/or deteriorating water quality on the process of calcification.

Subsurface Permian reef complexes of southern Tunisia: Shelf carbonate setting and paleogeographic implications

NASA Astrophysics Data System (ADS)

Zaafouri, Adel; Haddad, Sofiene; Mannaî-Tayech, Beya

2017-05-01

2-D seismic reflection sections, borehole data as well as published and unpublished data have been investigated to reconstruct the paleogeography of southern Tunisia during Middle to Late Permian times. Paleogeographical reconstruction based on the integration of petroleum well data and 2-D seismic facies interpretation shows three main depositional areas with very contrasting sedimentary pile. These are 1) a subsiding basin; 2) an outer shelf carbonate, and 3) an inner shelf carbonate. Based on typical electric responses of reef buildups to seismic wave, we shall urge that during Middle Permian times, the outer carbonate shelf was subject of reef barrier development. Lithology evidences from core samples show that reef framework correspond mainly to fossiliferous limestone and dolomite. The WNW-ESE recognized reef barrier led between latitudes 33° 10‧ 00″N and 33° 20‧ 00″N. The Tebaga of Medenine outcrop constitutes the northern-edge of this barrier. Westward it may be extended to Bir Soltane area whereas its extension eastward is still to be determined. Biogenic buildups took place preferentially over faulted Carboniferous and lower Paleozoic paleohighs resulting likely from the Hercynian orogeny. The subsiding basin is located north of Tebaga of Medenine outcrop where Upper Permian sedimentary sequence is made entirely of 4000 m deep marine green silty shale facies. These are ascribed to unorganized and chaotic reflectors. Inner carbonate shelf facies succession corresponds to a typical interbedding of shallow marine carbonate deposits, shale, dolomite, and anhydrite inducing parallel-layered of strong amplitude and good continuity reflectors. Also within the inner carbonate shelf patch reef or reef pinnacles have been identified based on their seismic signature particularly their low vertical development as compared to reef complexes. Southward, towards Sidi Toui area, the Upper Permian depositional sequence thins out and bears witness of land influences as entailed by the increase of silicoclastic sedimentary supply and the lack of marine fossil.

Taphonomy of coral reefs from Southern Lagoon of Belize

DOE Office of Scientific and Technical Information (OSTI.GOV)

Westphall, M.J.; Ginsburg, R.N.

1985-02-01

The Southern Lagoon of the Belize barrier complex, an area of some 600 km/sup 2/, contains a tremendous number of lagoon reefs, which range in size from patches several meters across to rhomboidal-shaped structures several kilometers in their long dimension. These lagoon reefs are remarkable because they have Holocene sediment accumulations in excess of 13 m consisting almost entirely of coral debris and lime mud and sand, and rise up to 30 m above the surrounding lagoon floor with steeply sloping sides (50-80/sup 0/), yet are totally uncemented. The reef-building biota and their corresponding deposits were studied at a representativemore » reef, the rhomboidal complex of Channel Cay. As with many of the reefs in this area, the steeply sloping flanks of Channel Cay are covered mainly by the branched staghorn coral Acropora cervicornis and ribbonlike and platy growth of Agaricia spp. The living corals are not cemented to the substrate, but are merely intergrown. Fragmented pieces of corals accumulate with an open framework below the living community; this open framework is subsequently infilled by lime muds and sands produced mainly from bioerosion. Results from probing and coring suggest that the bafflestone fabric of coral debris and sediment extends at least 13 m into the subsurface. Radiocarbon-age estimates indicate these impressive piles of coral rubble and sediment have accumulated in the past 9000 yr (giving a minimum accumulation rate of 1.4 m/1000 yr) and illustrate the potential for significant carbonate buildups without the need for early lithification.« less

The role of coral reef rugosity in dissipating wave energy and coastal protection

NASA Astrophysics Data System (ADS)

Harris, Daniel; Rovere, Alessio; Parravicini, Valeriano; Casella, Elisa

2016-04-01

Coral reefs are the most effective natural barrier in dissipating wave energy through breaking and bed friction. The attenuation of wave energy by coral reef flats is essential in the protection and stability of coral reef aligned coasts and reef islands. However, the effectiveness of wave energy dissipation by coral reefs may be diminished under future climate change scenarios with a potential reduction of coral reef rugosity due to increased stress environmental stress on corals. The physical roughness or rugosity of coral reefs is directly related to ecological diversity, reef health, and hydrodynamic roughness. However, the relationship between physical roughness and hydrodynamic roughness is not well understood despite the crucial role of bed friction in dissipating wave energy in coral reef aligned coasts. We examine the relationship between wave energy dissipation across a fringing reef in relation to the cross-reef ecological zonation and the benthic hydrodynamic roughness. Waves were measured by pressure transducers in a cross-reef transect on the reefs flats and post processed on a wave by wave basis to determine wave statistics such as significant wave height and wave period. Results from direct wave measurement were then used to calibrate a 1D wave dissipation model that incorporates dissipation functions due to bed friction and wave breaking. This model was used to assess the bed roughness required to produce the observed wave height dissipation during propagation from deep water and across the coral reef flats. Changes in wave dissipation was also examined under future scenarios of sea level rise and reduced bed roughness. Three dimensional models of the benthic reef structure were produced through structure-from-motion photogrammetry surveys. Reef rugosity was then determined from these surveys and related to the roughness results from the calibrated model. The results indicate that applying varying roughness coefficients as the benthic ecological assemblage changes produces the most accurate assessment of wave energy dissipation across the reef flat. However, the modelled results of bed roughness (e.g. 0.01 for the fore-reef slope) were different to the directly measured rugosity values (0.05 for the fore-reef slope) from three dimension structure-from-motion surveys. In spite of this, the modelled and directly measured values of roughness are similar considering the difficulties outlined in previous research when relating the coral reef structural complexity to a single value of hydrodynamic roughness. Bed roughness was shown to be a secondary factor behind wave breaking in dissipating wave energy. However, without bed friction waves could be an order of magnitude higher in the back-reef environment. Bed friction is also increasingly important in wave dissipation at higher sea levels as wave energy dissipation due to wave breaking is reduced at greater depths. This shows that maintaining a structurally diverse and healthy reef is crucial under future sea level rise scenarios in order to maintain the protection of coastal environments. These results also indicate that significant geomorphic change in coastal environments will occur due to reduced wave dissipation at higher sea levels unless reefs are capable of keeping up with forecasted sea level rise.

Habitat Specialization in Tropical Continental Shelf Demersal Fish Assemblages

PubMed Central

Fitzpatrick, Ben M.; Harvey, Euan S.; Heyward, Andrew J.; Twiggs, Emily J.; Colquhoun, Jamie

2012-01-01

The implications of shallow water impacts such as fishing and climate change on fish assemblages are generally considered in isolation from the distribution and abundance of these fish assemblages in adjacent deeper waters. We investigate the abundance and length of demersal fish assemblages across a section of tropical continental shelf at Ningaloo Reef, Western Australia, to identify fish and fish habitat relationships across steep gradients in depth and in different benthic habitat types. The assemblage composition of demersal fish were assessed from baited remote underwater stereo-video samples (n = 304) collected from 16 depth and habitat combinations. Samples were collected across a depth range poorly represented in the literature from the fringing reef lagoon (1–10 m depth), down the fore reef slope to the reef base (10–30 m depth) then across the adjacent continental shelf (30–110 m depth). Multivariate analyses showed that there were distinctive fish assemblages and different sized fish were associated with each habitat/depth category. Species richness, MaxN and diversity declined with depth, while average length and trophic level increased. The assemblage structure, diversity, size and trophic structure of demersal fishes changes from shallow inshore habitats to deeper water habitats. More habitat specialists (unique species per habitat/depth category) were associated with the reef slope and reef base than other habitats, but offshore sponge-dominated habitats and inshore coral-dominated reef also supported unique species. This suggests that marine protected areas in shallow coral-dominated reef habitats may not adequately protect those species whose depth distribution extends beyond shallow habitats, or other significant elements of demersal fish biodiversity. The ontogenetic habitat partitioning which is characteristic of many species, suggests that to maintain entire species life histories it is necessary to protect corridors of connected habitats through which fish can migrate. PMID:22761852

Spatial Patterns in the Distribution, Diversity and Abundance of Benthic Foraminifera around Moorea (Society Archipelago, French Polynesia)

PubMed Central

2015-01-01

Coral reefs are now subject to global threats and influences from numerous anthropogenic sources. Foraminifera, a group of unicellular shelled organisms, are excellent indicators of water quality and reef health. Thus we studied a set of samples taken in 1992 to provide a foraminiferal baseline for future studies of environmental change. Our study provides the first island-wide analysis of shallow benthic foraminifera from around Moorea (Society Archipelago). We analyzed the composition, species richness, patterns of distribution and abundance of unstained foraminiferal assemblages from bays, fringing reefs, nearshore and back- and fore-reef environments. A total of 380 taxa of foraminifera were recorded, a number that almost doubles previous species counts. Spatial patterns of foraminiferal assemblages are characterized by numerical abundances of individual taxa, cluster groups and gradients of species richness, as documented by cluster, Fisher α, ternary plot and Principal Component Analyses (PCA). The inner bay inlets are dominated by stress-tolerant, mostly thin-shelled taxa of Bolivina, Bolivinella, Nonionoides, Elongobula, and Ammonia preferring low-oxygen and/or nutrient-rich habitats influenced by coastal factors such as fresh-water runoff and overhanging mangroves. The larger symbiont-bearing foraminifera (Borelis, Amphistegina, Heterostegina, Peneroplis) generally live in the oligotrophic, well-lit back- and fore-reef environments. Amphisteginids and peneroplids were among the few taxa found in the bay environments, probably due to their preferences for phytal substrates and tolerance to moderate levels of eutrophication. The fringing reef environments along the outer bay are characterized by Borelis schlumbergeri, Heterostegina depressa, Textularia spp. and various miliolids which represent a hotspot of diversity within the complex reef-lagoon system of Moorea. The high foraminiferal Fisher α and species richness diversity in outer bay fringing reefs is consistent with the disturbance-mosaic (microhabitat heterogeneity) hypothesis. Calculations of the FORAM Index (FI), a single metric index to assess reef vitality, indicate that all fore- and most back-reef environments support active carbonate accretion and provide habitat suitability for carbonate producers dependent on algal symbiosis. Lowest suitability values were recorded within the innermost bays, an area where natural and increasing anthropogenic influences continue to impact the reefs. The presence of habitat specific assemblages and numerical abundance values of individual taxa show that benthic foraminifera are excellent recorders of environmental perturbations and good indicators useful in modern and ancient ecological and environmental studies. PMID:26710320

Spatial Patterns in the Distribution, Diversity and Abundance of Benthic Foraminifera around Moorea (Society Archipelago, French Polynesia).

PubMed

Fajemila, Olugbenga T; Langer, Martin R; Lipps, Jere H

2015-01-01

Coral reefs are now subject to global threats and influences from numerous anthropogenic sources. Foraminifera, a group of unicellular shelled organisms, are excellent indicators of water quality and reef health. Thus we studied a set of samples taken in 1992 to provide a foraminiferal baseline for future studies of environmental change. Our study provides the first island-wide analysis of shallow benthic foraminifera from around Moorea (Society Archipelago). We analyzed the composition, species richness, patterns of distribution and abundance of unstained foraminiferal assemblages from bays, fringing reefs, nearshore and back- and fore-reef environments. A total of 380 taxa of foraminifera were recorded, a number that almost doubles previous species counts. Spatial patterns of foraminiferal assemblages are characterized by numerical abundances of individual taxa, cluster groups and gradients of species richness, as documented by cluster, Fisher α, ternary plot and Principal Component Analyses (PCA). The inner bay inlets are dominated by stress-tolerant, mostly thin-shelled taxa of Bolivina, Bolivinella, Nonionoides, Elongobula, and Ammonia preferring low-oxygen and/or nutrient-rich habitats influenced by coastal factors such as fresh-water runoff and overhanging mangroves. The larger symbiont-bearing foraminifera (Borelis, Amphistegina, Heterostegina, Peneroplis) generally live in the oligotrophic, well-lit back- and fore-reef environments. Amphisteginids and peneroplids were among the few taxa found in the bay environments, probably due to their preferences for phytal substrates and tolerance to moderate levels of eutrophication. The fringing reef environments along the outer bay are characterized by Borelis schlumbergeri, Heterostegina depressa, Textularia spp. and various miliolids which represent a hotspot of diversity within the complex reef-lagoon system of Moorea. The high foraminiferal Fisher α and species richness diversity in outer bay fringing reefs is consistent with the disturbance-mosaic (microhabitat heterogeneity) hypothesis. Calculations of the FORAM Index (FI), a single metric index to assess reef vitality, indicate that all fore- and most back-reef environments support active carbonate accretion and provide habitat suitability for carbonate producers dependent on algal symbiosis. Lowest suitability values were recorded within the innermost bays, an area where natural and increasing anthropogenic influences continue to impact the reefs. The presence of habitat specific assemblages and numerical abundance values of individual taxa show that benthic foraminifera are excellent recorders of environmental perturbations and good indicators useful in modern and ancient ecological and environmental studies.

Mesoscale variation in the photophysiology of the reef building coral Pocillopora damicornis along an environmental gradient

NASA Astrophysics Data System (ADS)

Cooper, Timothy F.; Ulstrup, Karin E.

2009-06-01

Spatial variation in the photophysiology of symbiotic dinoflagellates (zooxanthellae) of the scleractinian coral Pocillopora damicornis was examined along an environmental gradient in the Whitsunday Islands (Great Barrier Reef) at two depths (3 m and 6 m). Chlorophyll a fluorescence of photosystem II (PSII) and PAR-absorptivity measurements were conducted using an Imaging-PAM (pulse-amplitude-modulation) fluorometer. Most photophysiological parameters correlated with changes in environmental conditions quantified by differences in water quality along the gradient. For example, maximum quantum yield ( Fv/ Fm) increased and PAR-absorptivity decreased as water quality improved along the gradient from nearshore reefs (low irradiance, elevated nutrients and sediments) to outer islands (high irradiance, low nutrients and sediments). For apparent photosynthetic rate (PS max) and minimum saturating irradiance ( Ek), the direction of change differed depending on sampling depth, suggesting that different mechanisms of photo-acclimatisation operated between shallow and deep corals. Deep corals conformed to typical patterns of light/shade acclimatisation whereas shallow corals exhibited reduced PS max and Ek with improving water quality coinciding with greater heat dissipation (NPQ 241). Furthermore, deep corals on nearshore reefs exhibited elevated Q241 in comparison to outer islands possibly due to effects of sedimentation and/or pollutants rather than irradiance. These results highlight the importance of mesoscale sampling to obtain useful estimates of the variability of photophysiological parameters, particularly if such measures are to be used as bioindicators of the condition of coral reefs.

The influence of sea level and cyclones on Holocene reef flat development: Middle Island, central Great Barrier Reef

NASA Astrophysics Data System (ADS)

Ryan, E. J.; Smithers, S. G.; Lewis, S. E.; Clark, T. R.; Zhao, J. X.

2016-09-01

The geomorphology and chronostratigraphy of the reef flat (including microatoll ages and elevations) were investigated to better understand the long-term development of the reef at Middle Island, inshore central Great Barrier Reef. Eleven cores across the fringing reef captured reef initiation, framework accretion and matrix sediments, allowing a comprehensive appreciation of reef development. Precise uranium-thorium ages obtained from coral skeletons revealed that the reef initiated ~7873 ± 17 years before present (yBP), and most of the reef was emplaced in the following 1000 yr. Average rates of vertical reef accretion ranged between 3.5 and 7.6 mm yr-1. Reef framework was dominated by branching corals ( Acropora and Montipora). An age hiatus of ~5000 yr between 6439 ± 19 and 1617 ± 10 yBP was observed in the core data and attributed to stripping of the reef structure by intense cyclones during the mid- to late-Holocene. Large shingle ridges deposited onshore and basset edges preserved on the reef flat document the influence of cyclones at Middle Island and represent potential sinks for much of the stripped material. Stripping of the upper reef structure around the outer margin of the reef flat by cyclones created accommodation space for a thin (<1.2 m) veneer of reef growth after 1617 ± 10 yBP that grew over the eroded mid-Holocene reef structure. Although limited fetch and open-water exposure might suggest the reef flat at Middle Island is quite protected, our results show that high-energy waves presumably generated by cyclones have significantly influenced both Holocene reef growth and contemporary reef flat geomorphology.

Flexure Bearing Reduces Startup Friction

NASA Technical Reports Server (NTRS)

Clingman, W. Dean

1991-01-01

Design concept for ball bearing incorporates small pieces of shim stock, wire spokes like those in bicycle wheels, or other flexing elements to reduce both stiction and friction slope. In flexure bearing, flexing elements placed between outer race of ball bearing and outer ring. Elements flex when ball bearings encounter small frictional-torque "bumps" or even larger ones when bearing balls encounter buildups of grease on inner or outer race. Flexure of elements reduce high friction slopes of "bumps", helping to keep torque between outer ring and inner race low and more nearly constant. Concept intended for bearings in gimbals on laser and/or antenna mirrors.

Spatial patterns of self-recruitment of a coral reef fish in relation to island-scale retention mechanisms.

PubMed

Beldade, Ricardo; Holbrook, Sally J; Schmitt, Russell J; Planes, Serge; Bernardi, Giacomo

2016-10-01

Oceanographic features influence the transport and delivery of marine larvae, and physical retention mechanisms, such as eddies, can enhance self-recruitment (i.e. the return of larvae to their natal population). Knowledge of exact locations of hatching (origin) and settlement (arrival) of larvae of reef animals provides a means to compare observed patterns of self-recruitment 'connectivity' with those expected from water circulation patterns. Using parentage inference based on multiple sampling years in Moorea, French Polynesia, we describe spatial and temporal variation in self-recruitment of the anemonefish Amphiprion chrysopterus, evaluate the consistency of net dispersal distances of self-recruits against the null expectation of passive particle dispersal and test the hypothesis that larvae originating in certain reef habitats (lagoons and passes) would be retained and thus more likely to self-recruit than those originating on the outer (fore) reef. Estimates of known self-recruitment were consistent across the sampling years (~25-27% of sampled recruits). For most (88%) of these self-recruits, the net distance between hatching and settlement locations was within the maximum dispersal distance expected for a neutrally buoyant passive particle based on the longest duration of the larval dispersive phase and the average direction and speed of current flow around Moorea. Furthermore, a parent of a given body size on the outer (fore) reef of Moorea was less likely to produce self-recruits than those in passes. Our findings show that even a simple dispersal model based on net average flow and direction of alongshore currents can provide insight into landscape-scale retention patterns of reef fishes. © 2016 John Wiley & Sons Ltd.

Geological and technological assessment of artificial reef sites, Louisiana outer continental shelf

USGS Publications Warehouse

Pope, D.L.; Moslow, T.F.; Wagner, J.B.

1993-01-01

This paper describes the general procedures used to select sites for obsolete oil and gas platforms as artificial reefs on the Louisiana outer continental shelf (OCS). The methods employed incorporate six basic steps designed to resolve multiple-use conflicts that might otherwise arise with daily industry and commercial fishery operations, and to identify and assess both geological and technological constraints that could affect placement of the structures. These steps include: (1) exclusion mapping; (2) establishment of artificial reef planning areas; (3) database compilation; (4) assessment and interpretation of database; (5) mapping of geological and man-made features within each proposed reef site; and (6) site selection. Nautical charts, bathymetric maps, and offshore oil and gas maps were used for exclusion mapping, and to select nine regional planning areas. Pipeline maps were acquired from federal agencies and private industry to determine their general locations within each planning area, and to establish exclusion fairways along each pipeline route. Approximately 1600 line kilometers of high-resolution geophysical data collected by federal agencies and private industry was acquired for the nine planning areas. These data were interpreted to determine the nature and extent of near-surface geologic features that could affect placement of the structures. Seismic reflection patterns were also characterized to evaluate near-bottom sedimentation processes in the vicinity of each reef site. Geotechnical borings were used to determine the lithological and physical properties of the sediment, and for correlation with the geophysical data. Since 1987, five sites containing 10 obsolete production platforms have been selected on the Louisiana OCS using these procedures. Industry participants have realized a total savings of approximately US $1 500 000 in salvaging costs by converting these structures into artificial reefs. ?? 1993.

Demersal fishes associated with Lophelia pertusa coral and hard-substrate biotopes on the continental slope, northern Gulf of Mexico

USGS Publications Warehouse

Sulak, Kenneth J.; Allen, Brooks R.; Luke, Kirsten E.; Norem, April D.; Randall, Michael T.; Quaid, Andrew J.; Yeargin, George E.; Miller, Jana M.; Harden, William M.; Caruso, John H.; Ross, Steve W.

2007-01-01

The demersal fish fauna of Lophelia pertusa (Linnaeus, 1758) coral reefs and associated hard-bottom biotopes was investigated at two depth horizons in the northern Gulf of Mexico using a manned submersible and remote sampling. The Viosca Knoll fauna consisted of at least 53 demersal fish species, 37 of which were documented by submersible video. On the 325 m horizon, dominant taxa determined from frame-by-frame video analysis included Stromateidae, Serranidae, Trachichthyidae, Congridae, Scorpaenidae, and Gadiformes. On the 500 m horizon, large mobile visual macrocarnivores of families Stromateidae and Serranidae dropped out, while a zeiform microcarnivore assumed importance on reef "Thicket" biotope, and the open-slope taxa Macrouridae and Squalidae gained in importance. The most consistent faunal groups at both depths included sit-and-wait and hover-and-wait strategists (Scorpaenidae, Congridae, Trachichthyidae), along with generalized mesocarnivores (Gadiformes). The specialized microcarnivore, Grammicolepis brachiusculus Poey, 1873, appears to be highly associated with Lophelia reefs. The coral "Thicket" biotope was extensively developed on the 500 m site, but fish abundance was low with only 95 fish per hectare. In contrast to Lophelia reefs from the eastern the North Atlantic, the coral "Rubble" biotope was essentially absent. This study represents the first quantitative analysis of fishes associated with Lophelia reefs in the Gulf of Mexico, and generally in the western North Atlantic.

Projecting of wave height and water level on reef-lined coasts due to intensified tropical cyclones and sea level rise in Palau to 2100

NASA Astrophysics Data System (ADS)

Hongo, Chuki; Kurihara, Haruko; Golbuu, Yimnang

2018-03-01

Tropical cyclones (TCs) and sea level rise (SLR) cause major problems including beach erosion, saltwater intrusion into groundwater, and damage to infrastructure in coastal areas. The magnitude and extent of damage is predicted to increase as a consequence of future climate change and local factors. Upward reef growth has attracted attention for its role as a natural breakwater, reducing the risks of natural disasters to coastal communities. However, projections of change in the risk to coastal reefs under conditions of intensified TCs and SLR are poorly quantified. In this study we projected the wave height and water level on Melekeok reef in the Palau Islands by 2100, based on wave simulations under intensified TCs (significant wave height at the outer ocean: SWHo = 8.7-11.0 m; significant wave period at the outer ocean: SWPo = 13-15 s) and SLR (0.24-0.98 m). To understand effects of upward reef growth on the reduction of the wave height and water level, the simulation was conducted for two reef condition scenarios: a degraded reef and a healthy reef. Moreover, analyses of reef growth based on a drilled core provided an assessment of the coral community and rate of reef production necessary to reduce the risk from TCs and SLR on the coastal areas. According to our calculations under intensified TCs and SLR by 2100, significant wave heights at the reef flat (SWHr) will increase from 1.05-1.24 m at present to 2.14 m if reefs are degraded. Similarly, by 2100 the water level at the shoreline (WLs) will increase from 0.86-2.10 m at present to 1.19-3.45 m if reefs are degraded. These predicted changes will probably cause beach erosion, saltwater intrusion into groundwater, and damage to infrastructure, because the coastal village is located at ˜ 3 m above the present mean sea level. These findings imply that even if the SWHr is decreased by only 0.1 m by upward reef growth, it will probably reduce the risks of costal damages. Our results showed that a healthy reef will reduce a maximum of 0.44 m of the SWHr. According to analysis of drilled core, corymbose Acropora corals will be key to reducing the risks, and 2.6-5.8 kg CaCO3 m-2 yr-1, equivalent to > 8 % of coral cover, will be required to keep a healthy reef by 2100. This study highlights that the maintaining reef growth (as a function of coral cover) in the future is effective in reducing the risk of coastal damage arising from wave action. Although the present study focuses on Melekeok fringing reef, many coral reefs are in the same situation under conditions of intensified TCs and SLR, and therefore the results of this study are applicable to other reefs. These researches are critical in guiding policy development directed at disaster prevention for small island nations and for developing and developed countries.

Comparative population assessments of Nautilus sp. in the Philippines, Australia, Fiji, and American Samoa using baited remote underwater video systems.

PubMed

Barord, Gregory J; Dooley, Frederick; Dunstan, Andrew; Ilano, Anthony; Keister, Karen N; Neumeister, Heike; Preuss, Thomas; Schoepfer, Shane; Ward, Peter D

2014-01-01

The extant species of Nautilus and Allonautilus (Cephalopoda) inhabit fore-reef slope environments across a large geographic area of the tropical western Pacific and eastern Indian Oceans. While many aspects of their biology and behavior are now well-documented, uncertainties concerning their current populations and ecological role in the deeper, fore-reef slope environments remain. Given the historical to current day presence of nautilus fisheries at various locales across the Pacific and Indian Oceans, a comparative assessment of the current state of nautilus populations is critical to determine whether conservation measures are warranted. We used baited remote underwater video systems (BRUVS) to make quantitative photographic records as a means of estimating population abundance of Nautilus sp. at sites in the Philippine Islands, American Samoa, Fiji, and along an approximately 125 km transect on the fore reef slope of the Great Barrier Reef from east of Cairns to east of Lizard Island, Australia. Each site was selected based on its geography, historical abundance, and the presence (Philippines) or absence (other sites) of Nautilus fisheries The results from these observations indicate that there are significantly fewer nautiluses observable with this method in the Philippine Islands site. While there may be multiple possibilities for this difference, the most parsimonious is that the Philippine Islands population has been reduced due to fishing. When compared to historical trap records from the same site the data suggest there have been far more nautiluses at this site in the past. The BRUVS proved to be a valuable tool to measure Nautilus abundance in the deep sea (300-400 m) while reducing our overall footprint on the environment.

Long-term records of coral calcification across the central Great Barrier Reef: assessing the impacts of river runoff and climate change

NASA Astrophysics Data System (ADS)

D'Olivo, J. P.; McCulloch, M. T.; Judd, K.

2013-12-01

Calcification rates are reported for 41 long-lived Porites corals from 7 reefs, in an inshore to offshore transect across the central Great Barrier Reef (GBR). Over multi-decadal timescales, corals in the mid-shelf (1947-2008) and outer reef (1952-2004) regions of the GBR exhibit a significant increase in calcification of 10.9 ± 1.1 % (1.4 ± 0.2 % per decade; ±1 SE) and 11.1 ± 3.9 % (2.1 ± 0.8 % per decade), respectively, while inner-shelf (1930-2008), reefs show a decline of 4.6 ± 1.3 % (0.6 ± 0.2 % per decade). This long-term decline in calcification for the inner GBR is attributed to the persistent ongoing effects of high sediment/nutrients loads from wet season river discharges, compounded by the effects of thermal stress, especially during the 1998 bleaching event. For the recent period (1990-2008), our data show recovery from the 1998 bleaching event, with no significant trend in the rates of calcification (1.1 ± 2.0 %) for the inner reefs, while corals from the mid-shelf central GBR show a decline of 3.3 ± 0.9 %. These results are in marked contrast to the extreme reef-wide declines of 14.2 % reported by De'ath et al. (2009) for the period of 1990-2005. The De'ath et al. (2009) results are, however, found to be compromised by the inclusion of incomplete final years, duplicated records, together with a bias toward inshore reefs strongly affected by the 1998 bleaching. Our new findings nevertheless continue to raise concerns, with the inner-shelf reefs continuing to show long-term declines in calcification consistent with increased disturbance from land-based effects. In contrast, the more `pristine' mid- and outer-shelf reefs appear to be undergoing a transition from increasing to decreasing rates of calcification, possibly reflecting the effects of CO2-driven climate change. Our study highlights the importance of properly undertaken, regular assessments of coral calcification that are representative of the distinctive cross-shelf environments and discriminate between local disturbances and the global impacts of climate change and ocean acidification.

The great 1933 Sanriku-oki earthquake: reappraisal of the main shock and its aftershocks and implications for its tsunami using regional tsunami and seismic data

NASA Astrophysics Data System (ADS)

Uchida, Naoki; Kirby, Stephen H.; Umino, Norihito; Hino, Ryota; Kazakami, Tomoe

2016-09-01

The aftershock distribution of the 1933 Sanriku-oki outer trench earthquake is estimated by using modern relocation methods and a newly developed velocity structure to examine the spatial extent of the source-fault and the possibility of a triggered interplate seismicity. In this study, we first examined the regional data quality of the 1933 earthquake based on smoked-paper records and then relocated the earthquakes by using the 3-D velocity structure and double-difference method. The improvements of hypocentre locations using these methods were confirmed by the examination of recent earthquakes that are accurately located based on ocean bottom seismometer data. The results show that the 1933 aftershocks occurred under both the outer- and inner-trench-slope regions. In the outer-trench-slope region, aftershocks are distributed in a ˜280-km-long area and their depths are shallower than 50 km. Although we could not constrain the fault geometry from the hypocentre distribution, the depth distribution suggests the whole lithosphere is probably not under deviatoric tension at the time of the 1933 earthquake. The occurrence of aftershocks under the inner trench slope was also confirmed by an investigation of waveform frequency difference between outer and inner trench earthquakes as recorded at Mizusawa. The earthquakes under the inner trench slope were shallow (depth ≦30 km) and the waveforms show a low-frequency character similar to the waveforms of recent, precisely located earthquakes in the same area. They are also located where recent activity of interplate thrust earthquakes is high. These suggest that the 1933 outer-trench-slope main shock triggered interplate earthquakes, which is an unusual case in the order of occurrence in contrast with the more common pairing of a large initial interplate shock with subsequent outer-slope earthquakes. The off-trench earthquakes are distributed about 80 km width in the trench perpendicular direction. This wide width cannot be explained from a single high-angle fault confined at a shallow depth (depth ≦50 km). The upward motion of the 1933 tsunami waveform records observed at Sanriku coast also cannot be explained from a single high-angle west-dipping normal fault. If we consider additional fault, involvement of high-angle, east-dipping normal faults can better explain the tsunami first motion and triggering of the aftershock in a wide area under the outer trench slope. Therefore multiple off-trench normal faults may have activated during the 1933 earthquake. We also relocated recent (2001-2012) seismicity by the same method. The results show that the present seismicity in the outer-trench-slope region can be divided into several groups along the trench. Comparison of the 1933 rupture dimensions based on our aftershock relocations with the morphologies of fault scarps in the outer trench slope suggest that the rupture was limited to the region where fault scarps are largely trench parallel and cross cut the seafloor spreading fabric. These findings imply that bending geometry and structural segmentation of the incoming plate largely controls the spatial extent of the 1933 seismogenic faulting. In this shallow rupture model for this largest outer trench earthquake, triggered seismicity in the forearc and structural control of faulting represent an important deformation styles for off-trench and shallow megathrust zones.

Phytoplankton transport to coral reefs by internal solitons in the northern South China Sea

NASA Astrophysics Data System (ADS)

Wang, Yu-Huai

2016-09-01

Evidence is presented that waters containing high concentrations of chlorophyll are transported by internal waves to the fore-reef slope of Dongsha Atoll in the northern South China Sea. High vertical resolution mooring measurements of temperature, pressure, and chlorophyll fluorescence revealed that the internal soliton cores could transport chlorophyll vertically downward and increase concentrations by an order of magnitude near the seafloor, compared to background levels. The reef areas that are potentially nourished by the pulses of phytoplankton are dominated by alcyonacean soft corals, while other reef areas that are less or not at all affected by internal waves are dominated by scleractinian hard corals. This suggests that the delivery of phytoplankton by internal solitons provides a plentiful food source that benefits the growth of soft corals.

Changes in coral-reef structure through the Miocene in the Mediterranean province: Adaptive versus environmental influence

NASA Astrophysics Data System (ADS)

Pomar, Luis; Hallock, Pamela

2007-10-01

Well-documented Mediterranean examples of Miocene carbonate platforms, with complete exposures from shallow-water to basinal facies, provide evidence for temporal changes in reef-building capacity of zooxanthellate corals. In pre-late Tortonian platforms, small coralgal patches and mounds occur from platform top to the toe of slope, but they did not build to sea level. In contrast, barrier reefs with unequivocal reef-crest structures that reached sea level are documented in late Tortonian-early Messinian platforms. We suggest that a change in both calcification rates and bathymetric zonation was the result of coevolution of corals and Symbiodinium zooxanthellae, coeval to global cooling and, at least at a regional scale, a geochemical change that supported widespread aragonite precipitation through the late Miocene.

A new vision of carbonate slopes: the Little Bahama Bank

NASA Astrophysics Data System (ADS)

Mulder, Thierry; Gillet, Hervé; Hanquiez, Vincent; Reijmer, John J.; Tournadour, Elsa; Chabaud, Ludivine; Principaud, Mélanie; Schnyder, Jara; Borgomano, Jean

2015-04-01

Recent data collected in November 2014 (RV Walton Smith) on the upper slope of the Little Bahama Bank (LBB) between 30 and 400 m water depth allowed to characterize the uppermost slope (Rankey et al., 2012) over a surface of 170 km2. The new data set includes multibeam bathymetry and acoustic imagery, 3.5 kHz very-high resolution (VHR) seismic reflection lines, 21 gravity cores and 11 Van Veen grabs. The upper slope of the LBB does not show a steep submarine cliff as known from western Great Bahama Bank. The carbonate bank progressively deepens towards the basin through a slighty inclined plateau. The slope value is < 6° down to a water depth of about 70 m. The plateau is incised by decameter-wide gullies that covered with indurated sediment. Some of the gullies like Roberts Cuts show a larger size and may play an important role in sediment transfer from the shallow-water carbonate bank down to the canyon heads at 400-500 m water depth (Mulder et al., 2012). In the gully area, the actual reef rests on paleo-reefs that outcrop at a water depth of about 40 m. These paleo-reef structures could represent reefs that established themselves during past periods of sea-level stagnation. Below this water depth, the slope steepens up to 30° to form the marginal escarpment (Rankey et al., 2012), which is succeeded by the open margin realm (Rankey et al., 2012). The slope inclination value decreases at about 180-200 m water depth. Between 20 and 200 m of water depth, the VHR seismic shows no seafloor sub-bottom reflector. Between 180 and 320 m water depth, the seafloor smoothens. The VHR seismic shows an onlapping sediment wedge, which starts in this water depth and shows a blind or very crudely stratified echo facies. The sediment thickness of this Holocene unit may exceed 20 m. It fills small depressions in the substratum and thickens in front of gullies that cut the carbonate platform edge. Sediment samples show the abundancy of carbonate mud on the present Bahamian seafloor. In gullies, coarser sediment can be found. In some case, soft sediments are absent suggesting by-passing. At water depth between 40 and 100 m, the present-day seafloor is covered with bioclastic sediments. The main carbonate producer seems to be the alga genus Halimeda. Sediments collected in the deeper part of the basin (water depth = 1080 m) on the distal lobe consist of massive fine to medium well-sorted aragonitic sand. This suggests that carbonate slope systems are able to sort sediment despite the relative short slope distance. Sorting could either be due to flow spilling above the terraces identified in the canyon heads (Mulder et al., 2012) or could result from bottom currents. In this area, flow velocity profiles in the water column show the presence of two superposed water masses with a pycnocline at about 600-700 m water depth. Mulder, T., Ducassou, E., Gillet, H., Hanquiez, V., Tournadour, E., Combes, J., Eberli, G.P, Kindler, P., Gonthier, E., Conesa, G., Robin, C., Sianipar, R., Reijmer, J.J.G., and François A. Canyon morphology on a modern carbonate slope of the Bahamas: Evidence of regional tectonic tilting. Geology, 40(9), 771-774. Rankey, E.C, and Doolittle, D.F. (2012). Geomorphology of carbonate platform-marginal uppermost slopes: Insights from a Holocene analogue, Little Bahama Bank, Bahamas. Sedimentology, 59, 2146-2171.

Potential reversal of a phase shift: the rapid decrease in the cover of the invasive green macroalga Dictyosphaeria cavernosa Forsskål on coral reefs in Kāne`ohe Bay, Oahu, Hawai`i

NASA Astrophysics Data System (ADS)

Stimson, J.; Conklin, E.

2008-12-01

The native green macroalga Dictyosphaeria cavernosa dominated most of the reef slope habitat in Kāne‘ohe Bay, Hawai‘i for 40 years prior to 2006 and had displaced corals from the habitats they created. This has been one of the most oft-cited examples of a phase shift occurring on a coral reef. After decades of relatively constant, high abundance of the alga, percent cover declined dramatically throughout the bay between February and June 2006. The sudden decrease in cover of this alga appears to be the result of an unusually protracted cloudy, rainy period in March 2006, which may have reduced irradiance and caused the alga to lose weight. Corals and red macroalgae living at the same depths and in some of the same habitats were apparently not affected by this 42-day period of rain and overcast skies. Competition between corals and D. cavernosa for space on reef slopes has been virtually eliminated by the death of this alga, but the unstable rubble formations, which remain in much of the area formerly covered by D. cavernosa may not be conducive to rapid increase in cover by the remaining corals or to establishment by coral recruits. Two years later, there was still no recovery of D. cavernosa. This represents a rare example of decline in macroalgal dominance on a reef and a partial reversal, possibly only temporary, of a phase shift.

Sabellaria jeramae, a new species (Annelida: Polychaeta: Sabellariidae) from the shallow waters of Malaysia, with a note on the ecological traits of reefs.

PubMed

Nishi, Eijiroh; Matsuo, Kanako; Capa, Maria; Tomioka, Shinri; Kajihara, Hiroshi; Kupriyanova, Elena K; Polgar, Gianluca

2015-12-07

A new species of the genus Sabellaria Lamarck, 1818 (Annelida: Polychaeta: Sabellariidae) is described from the intertidal zone of Jeram, Selangor, Malaysia. Sabellaria jeramae n. sp. is a gregarious species that constructs large reefs several hundreds of meters long and 50-200 m wide. The new species is distinguished from other congeners by the character combination of the presence of a single kind of middle paleae with conspicuous morphology, and outer paleae with long frayed teeth. Morphological features of the species are described and compared to those of all congeneric species. We also compare the reef structure and geographical distribution of the new species to those of the members of the family Sabellariidae around the world, demonstrating the ecological traits of the reefs.

Exploring the hidden shallows: extensive reef development and resilience within the turbid nearshore Great Barrier Reef

NASA Astrophysics Data System (ADS)

Morgan, Kyle; Perry, Chris; Smithers, Scott; Johnson, Jamie; Daniell, James

2016-04-01

Mean coral cover on Australia's Great Barrier Reef (GBR) has reportedly declined by over 15% during the last 30 years. Climate change events and outbreaks of coral disease have been major drivers of degradation, often exacerbating the stresses caused by localised human activities (e.g. elevated sediment and nutrient inputs). Here, however, in the first assessment of nearshore reef occurrence and ecology across meaningful spatial scales (15.5 sq km), we show that areas of the GBR shelf have exhibited strong intra-regional variability in coral resilience to declining water quality. Specifically, within the highly-turbid "mesophotic" nearshore (<10 m depth) of the central GBR, where terrigenous seafloor sediments are persistently resuspended by wave processes, coral cover averages 38% (twice that reported on mid- and outer-shelf reefs). Of the mapped area, 11% of the seafloor has distinct reef or coral community cover, a density comparable to that measured across the entire GBR shelf (9%). Identified coral taxa (21 genera) exhibited clear depth-stratification corresponding closely to light attenuation and seafloor topography. Reefs have accreted relatively rapidly during the late-Holocene (1.8-3.0 mm y-1) with rates of vertical reef growth influenced by intrinsic shifts in coral assemblages associated with reef development. Indeed, these shallow-water reefs may have similar potential as refugia from large-scale disturbance as their deep-water (>30 m) "mesophotic" equivalents, and also provide a basis from which to model future trajectories of reef growth within nearshore areas.

LIDAR optical rugosity of coral reefs in Biscayne National Park, Florida

USGS Publications Warehouse

Brock, J.C.; Wright, C.W.; Clayton, T.D.; Nayegandhi, A.

2004-01-01

The NASA Experimental Advanced Airborne Research Lidar (EAARL), a temporal waveform-resolving, airborne, green wavelength LIDAR (light detection and ranging), is designed to measure the submeter-scale topography of shallow reef substrates. Topographic variability is a prime component of habitat complexity, an ecological factor that both expresses and controls the abundance and distribution of many reef organisms. Following the acquisition of EAARL coverage over both mid-platform patch reefs and shelf-margin bank reefs within Biscayne National Park in August 2002, EAARL-based optical indices of topographic variability were evaluated at 15 patch reef and bank reef sites. Several sites were selected to match reefs previously evaluated in situ along underwater video and belt transects. The analysis used large populations of submarine topographic transects derived from the examination of closely spaced laser spot reflections along LIDAR raster scans. At all 15 sites, each LIDAR transect was evaluated separately to determine optical rugosity (Rotran), and the average elevation difference between adjacent points (Av(??E ap)). Further, the whole-site mean and maximum values of Ro tran and Av(??Eap) for the entire population of transects at each analysis site, along with their standard deviations, were calculated. This study revealed that the greater habitat complexity of inshore patch reefs versus outer bank reefs results in relative differences in topographic complexity that can be discerned in the laser returns. Accordingly, LIDAR sensing of optical rugosity is proposed as a complementary new technique for the rapid assessment of shallow coral reefs. ?? Springer-Verlag 2004.

Artificial reef effect in relation to offshore renewable energy conversion: state of the art.

PubMed

Langhamer, Olivia

2012-01-01

The rapid worldwide growth of offshore renewable energy production will provide marine organisms with new hard substrate for colonization, thus acting as artificial reefs. The artificial reef effect is important when constructing, for example, scour protections since it can generate an enhanced habitat. Specifically, artificial structures can create increased heterogeneity in the area important for species diversity and density. Offshore energy installations also have the positive side effect as they are a sanctuary area for trawled organisms. Higher survival of fish and bigger fish is an expected outcome that can contribute to a spillover to outer areas. One negative side effect is that invasive species can find new habitats in artificial reefs and thus influence the native habitats and their associated environment negatively. Different scour protections in offshore wind farms can create new habitats compensating for habitat loss by offshore energy installations. These created habitats differ from the lost habitat in species composition substantially. A positive reef effect is dependent on the nature and the location of the reef and the characteristics of the native populations. An increase in surface area of scour protections by using specially designed material can also support the reef effect and its productivity.

Artificial Reef Effect in relation to Offshore Renewable Energy Conversion: State of the Art

PubMed Central

2012-01-01

The rapid worldwide growth of offshore renewable energy production will provide marine organisms with new hard substrate for colonization, thus acting as artificial reefs. The artificial reef effect is important when constructing, for example, scour protections since it can generate an enhanced habitat. Specifically, artificial structures can create increased heterogeneity in the area important for species diversity and density. Offshore energy installations also have the positive side effect as they are a sanctuary area for trawled organisms. Higher survival of fish and bigger fish is an expected outcome that can contribute to a spillover to outer areas. One negative side effect is that invasive species can find new habitats in artificial reefs and thus influence the native habitats and their associated environment negatively. Different scour protections in offshore wind farms can create new habitats compensating for habitat loss by offshore energy installations. These created habitats differ from the lost habitat in species composition substantially. A positive reef effect is dependent on the nature and the location of the reef and the characteristics of the native populations. An increase in surface area of scour protections by using specially designed material can also support the reef effect and its productivity. PMID:23326215

Modern coral reefs of western Atlantic: new geological perspective

DOE Office of Scientific and Technical Information (OSTI.GOV)

MacIntyre, I.G.

1988-11-01

Contrary to popular belief of the late 1960s, western Atlantic Holocene reefs have a long history and are not feeble novice nearshore veneers that barely survived postglacial temperatures. Rather, the growth of these reefs kept pace with the rising seas of the Holocene transgression and their development was, for the most part, controlled by offshore wave-energy conditions and the relationship between changing sea levels and local shelf topography. Thus, the outer shelves of the eastern Caribbean in areas of high energy have relict reefs consisting predominantly of Acropora palmata, a robust shallow-water coral. The flooding of adjacent shelves during themore » postglacial transgression introduced stress conditions that terminated the growth of these reefs. When, about 7000 yr ago, shelf-water conditions improved, scattered deeper water coral communities reestablished themselves on these stranded shelf-edge reefs, and fringing and bank-barrier reefs began to flourish in shallow coastal areas. At the same time, the fragile and rapidly growing Acropora cervicornis and other corals flourished at greater depths on the more protected shelves of the western Caribbean and the Gulf of Mexico. As a result, late Holocene buildups more than 30 m thick developed in those areas. 7 figures.« less

Anatomy of a cyclically packaged Mesoproterozoic carbonate ramp in northern Canada

NASA Astrophysics Data System (ADS)

Sherman, A. G.; Narbonne, G. M.; James, N. P.

2001-03-01

Carbonates in the upper member of the Mesoproterozoic Victor Bay Formation are dominated by lime mud and packaged in cycles of 20-50 m. These thicknesses exceed those of classic shallowing-upward cycles by almost a factor of 10. Stratigraphic and sedimentological evidence suggests high-amplitude, high-frequency glacio-eustatic cyclicity, and thus a cool global climate ca. 1.2 Ga. The Victor Bay ramp is one of several late Proterozoic carbonate platforms where the proportions of lime mud, carbonate grains, and microbialites are more typical of younger Phanerozoic successions which followed the global waning of stromatolites. Facies distribution in the study area is compatible with deposition on a low-energy, microtidal, distally steepened ramp. Outer-ramp facies are hemipelagic lime mudstone, shale, carbonaceous rhythmite, and debrites. Mid-ramp facies are molar-tooth limestone tempestite with microspar-intraclast lags. In a marine environment where stromatolitic and oolitic facies were otherwise rare, large stromatolitic reefs developed at the mid-ramp, coeval with inner-ramp facies of microspar grainstone, intertidal dolomitic microbial laminite, and supratidal evaporitic red shale. Deep-subtidal, outer-ramp cycles occur in the southwestern part of the study area. Black dolomitic shale at the base is overlain by ribbon, nodular, and carbonaceous carbonate facies, all of which exhibit signs of synsedimentary disruption. Cycles in the northeast are shallow-subtidal and peritidal in character. Shallow-subtidal cycles consist of basal deep-water facies, and an upper layer of subtidal molar-tooth limestone tempestite interbedded with microspar calcarenite facies. Peritidal cycles are identical to shallow-subtidal cycles except that they contain a cap of dolomitic tidal-flat microbial laminite, and rarely of red shale sabkha facies or of sandy polymictic conglomerate. A transect along the wall of a valley extending 8.5 km perpendicular to depositional strike reveals progradation of inner-ramp tidal flats over outer- and mid-ramp facies during shoaling. The maximum basinward progradation of peritidal facies coincides with a zone of slope failure that may have promoted the development of the stromatolitic reefs. The sea-level history of the Victor Bay Formation is represented by three hectometre-scale sequences. An initial flooding event resulted in deposition of the lower Victor Bay shale member. Upper-member carbonate cycles were then deposited during highstand. Mid-ramp slumping was followed by late-highstand reef development. The second sequence began with development of an inner-ramp lowstand unconformity and a thick mid-ramp lowstand wedge. A second transgression promoted a more modest phase of reef development at the mid-ramp and shallow-water deposition continued inboard. A third and final transgressive episode eventually led to flooding of the backstepping ramp. Overall consistent cycle thickness and absence of truncated cycles, as well as the high rate and amount of creation of accommodation space, suggest that the periodicity and amplitude of sea-level fluctuation were relatively uniform, and point to a eustatic rather than tectonic mechanism of relative sea-level change. High-amplitude, high-frequency eustatic sea-level change is characteristic of icehouse worlds in which short-term, large-scale sea-level fluctuations accompany rapidly changing ice volumes affected by Milankovitch orbital forcing. Packaging of cyclic Upper Victor Bay carbonates therefore supports the hypothesis of a late Mesoproterozoic glacial period, as proposed by previous workers.

Turf algae-mediated coral damage in coastal reefs of Belize, Central America.

PubMed

Wild, Christian; Jantzen, Carin; Kremb, Stephan Georg

2014-01-01

Many coral reefs in the Caribbean experienced substantial changes in their benthic community composition during the last decades. This often resulted in phase shifts from scleractinian coral dominance to that by other benthic invertebrate or algae. However, knowledge about how the related role of coral-algae contacts may negatively affect corals is scarce. Therefore, benthic community composition, abundance of algae grazers, and the abundance and character of coral-algae contacts were assessed in situ at 13 Belizean reef sites distributed along a distance gradient to the Belizean mainland (12-70 km): Mesoamerican Barrier Reef (inshore), Turneffe Atoll (inner and outer midshore), and Lighthouse Reef (offshore). In situ surveys revealed significantly higher benthic cover by scleractinian corals at the remote Lighthouse Reef (26-29%) when compared to the other sites (4-19%). The abundance of herbivorous fish and the sea urchin Diadema antillarum significantly increased towards the offshore reef sites, while the occurrence of direct coral-algae contacts consequently increased significantly with decreasing distance to shore. About 60% of these algae contacts were harmful (exhibiting coral tissue damage, pigmentation change, or overgrowth) for corals (mainly genera Orbicella and Agaricia), particularly when filamentous turf algae were involved. These findings provide support to the hypothesis that (turf) algae-mediated coral damage occurs in Belizean coastal, near-shore coral reefs.

Dual-tracer method to estimate coral reef response to a plume of chemically modified seawater

NASA Astrophysics Data System (ADS)

Maclaren, J. K.; Caldeira, K.

2013-12-01

We present a new method, based on measurement of seawater samples, to estimate the response of a reef ecosystem to a plume of an additive (for example, a nutrient or other chemical). In the natural environment, where there may be natural variability in concentrations, it can be difficult to distinguish between changes in concentrations that would occur naturally and changes in concentrations that result from a chemical addition. Furthermore, in the unconfined natural environment, chemically modified water can mix with waters that have not been modified, making it difficult to distinguish between effects of dilution and effects of chemical fluxes or transformations. We present a dual-tracer method that extracts signals from observations that may be affected by both natural variability and dilution. In this dual-tracer method, a substance (in our example case, alkalinity) is added to the water in known proportion to a passive conservative tracer (in our example case, Rhodamine WT dye). The resulting plume of seawater is allowed to flow over the study site. Two transects are drawn across the plume at the front and back of the study site. If, in our example, alkalinity is plotted as a function of dye concentration for the front transect, the slope of the resulting mixing line is the ratio of alkalinity to dye in the added fluid. If a similar mixing line is measured and calculated for the back transect, the slope of this mixing line will indicate the amount of added alkalinity that remains in the water flowing out of the study site per unit of added dye. The ratio of the front and back slopes indicates the fraction of added alkalinity that was taken up by the reef. The method is demonstrated in an experiment performed on One Tree Reef (Queensland, Australia) aimed at showing that ocean acidification is already affecting coral reef growth. In an effort to chemically reverse some of the changes to seawater chemistry that have occurred over the past 200 years, we added sodium hydroxide to increase alkalinity in the plume and controlled for dilution with Rhodamine WT dye. Preliminary data will be presented and analyzed using the approach described above.

A Bayesian-based system to assess wave-driven flooding hazards on coral reef-lined coasts

USGS Publications Warehouse

Pearson, S. G.; Storlazzi, Curt; van Dongeren, A. R.; Tissier, M. F. S.; Reniers, A. J. H. M.

2017-01-01

Many low-elevation, coral reef-lined, tropical coasts are vulnerable to the effects of climate change, sea level rise, and wave-induced flooding. The considerable morphological diversity of these coasts and the variability of the hydrodynamic forcing that they are exposed to make predicting wave-induced flooding a challenge. A process-based wave-resolving hydrodynamic model (XBeach Non-Hydrostatic, “XBNH”) was used to create a large synthetic database for use in a “Bayesian Estimator for Wave Attack in Reef Environments” (BEWARE), relating incident hydrodynamics and coral reef geomorphology to coastal flooding hazards on reef-lined coasts. Building on previous work, BEWARE improves system understanding of reef hydrodynamics by examining the intrinsic reef and extrinsic forcing factors controlling runup and flooding on reef-lined coasts. The Bayesian estimator has high predictive skill for the XBNH model outputs that are flooding indicators, and was validated for a number of available field cases. It was found that, in order to accurately predict flooding hazards, water depth over the reef flat, incident wave conditions, and reef flat width are the most essential factors, whereas other factors such as beach slope and bed friction due to the presence or absence of corals are less important. BEWARE is a potentially powerful tool for use in early warning systems or risk assessment studies, and can be used to make projections about how wave-induced flooding on coral reef-lined coasts may change due to climate change.

Evidence of extensive reef development and high coral cover in nearshore environments: implications for understanding coral adaptation in turbid settings

PubMed Central

Morgan, Kyle M.; Perry, Chris T.; Smithers, Scott G.; Johnson, Jamie A.; Daniell, James J.

2016-01-01

Mean coral cover has reportedly declined by over 15% during the last 30 years across the central Great Barrier Reef (GBR). Here, we present new data that documents widespread reef development within the more poorly studied turbid nearshore areas (<10 m depth), and show that coral cover on these reefs averages 38% (twice that reported on mid- and outer-shelf reefs). Of the surveyed seafloor area, 11% had distinct reef or coral community cover. Although the survey area represents a small subset of the nearshore zone (15.5 km2), this reef density is comparable to that measured across the wider GBR shelf (9%). We also show that cross-shelf coral cover declines with distance from the coast (R2 = 0.596). Identified coral taxa (21 genera) exhibited clear depth-stratification, corresponding closely to light attenuation and seafloor topography, with reefal development restricted to submarine antecedent bedforms. Data from this first assessment of nearshore reef occurrence and ecology measured across meaningful spatial scales suggests that these coral communities may exhibit an unexpected capacity to tolerate documented declines in water quality. Indeed, these shallow-water nearshore reefs may share many characteristics with their deep-water (>30 m) mesophotic equivalents and may have similar potential as refugia from large-scale disturbances. PMID:27432782

Evidence of extensive reef development and high coral cover in nearshore environments: implications for understanding coral adaptation in turbid settings.

PubMed

Morgan, Kyle M; Perry, Chris T; Smithers, Scott G; Johnson, Jamie A; Daniell, James J

2016-07-19

Mean coral cover has reportedly declined by over 15% during the last 30 years across the central Great Barrier Reef (GBR). Here, we present new data that documents widespread reef development within the more poorly studied turbid nearshore areas (<10 m depth), and show that coral cover on these reefs averages 38% (twice that reported on mid- and outer-shelf reefs). Of the surveyed seafloor area, 11% had distinct reef or coral community cover. Although the survey area represents a small subset of the nearshore zone (15.5 km(2)), this reef density is comparable to that measured across the wider GBR shelf (9%). We also show that cross-shelf coral cover declines with distance from the coast (R(2) = 0.596). Identified coral taxa (21 genera) exhibited clear depth-stratification, corresponding closely to light attenuation and seafloor topography, with reefal development restricted to submarine antecedent bedforms. Data from this first assessment of nearshore reef occurrence and ecology measured across meaningful spatial scales suggests that these coral communities may exhibit an unexpected capacity to tolerate documented declines in water quality. Indeed, these shallow-water nearshore reefs may share many characteristics with their deep-water (>30 m) mesophotic equivalents and may have similar potential as refugia from large-scale disturbances.

Abundance of the reef-building Petaloconchus varians (Gastropoda: Vermetidae) on intertidal rocky shores at Ilha Grande Bay, southeastern Brazil.

PubMed

Breves, André; Széchy, Maria Teresa M DE; Lavrado, Helena P; Junqueira, Andrea O R

2017-01-01

The reef-building vermetid Petaloconchus varians occurs in the western Atlantic Ocean, from the Caribbean Sea to the southern coast of Brazil. The present study evaluated the abundance of P. varians on intertidal rocky shores in Ilha Grande Bay (Rio de Janeiro State), and characterized their reefs, describing the species density, besides the weight and the belt width of the reefs. Petaloconchus varians reefs were recorded at 25 sites, with rocky shores exposed to different wave action (very sheltered, sheltered, semi-exposed and exposed) and slopes (10° to 46°). Clusters of individuals constructed large reefs along the middle intertidal zone, creating a wide belt (38 cm to 2 m). The density of P. varians and the weight of the reefs ranged from 620 to 2,559 ind.100 cm-2 and from 100 to 1,500 g.100 cm-2, respectively. Considering that the species was last reported from the area in the mid-20th century, the present study suggests that P. varians reefs are becoming dominant in the intertidal zone of rocky shores in Ilha Grande Bay. This is a contribution to knowledge of this ecosystem in Ilha Grande Bay, in view of local or global ecological changes.

Influence of depressed-index outer ring on evanescent tunneling loss in tapered double-cladding fibers.

PubMed

Chen, Nan-Kuang; Hsu, Kuei-Chu; Liaw, Shien-Kuei; Lai, Yinchieh; Chi, Sien

2008-08-01

A tapered fiber with a depressed-index outer ring is fabricated and dispersion engineered to generate a widely tunable (1250-1650 nm) fundamental-mode leakage loss with a high cutoff slope (-1.2 dB/nm) and a high attenuation for stop band (>50 dB) by modification of both waveguide and material dispersions. The higher cutoff slope is achieved with a larger cross angle between the two refractive index dispersion curves of the tapered fiber and surrounding optical liquids through the use of depressed-index outer ring structures in double-cladding fibers.

Predicting the Location and Spatial Extent of Submerged Coral Reef Habitat in the Great Barrier Reef World Heritage Area, Australia

PubMed Central

Bridge, Tom; Beaman, Robin; Done, Terry; Webster, Jody

2012-01-01

Aim Coral reef communities occurring in deeper waters have received little research effort compared to their shallow-water counterparts, and even such basic information as their location and extent are currently unknown throughout most of the world. Using the Great Barrier Reef as a case study, habitat suitability modelling is used to predict the distribution of deep-water coral reef communities on the Great Barrier Reef, Australia. We test the effectiveness of a range of geophysical and environmental variables for predicting the location of deep-water coral reef communities on the Great Barrier Reef. Location Great Barrier Reef, Australia. Methods Maximum entropy modelling is used to identify the spatial extent of two broad communities of habitat-forming megabenthos phototrophs and heterotrophs. Models were generated using combinations of geophysical substrate properties derived from multibeam bathymetry and environmental data derived from Bio-ORACLE, combined with georeferenced occurrence records of mesophotic coral communities from autonomous underwater vehicle, remotely operated vehicle and SCUBA surveys. Model results are used to estimate the total amount of mesophotic coral reef habitat on the GBR. Results Our models predict extensive but previously undocumented coral communities occurring both along the continental shelf-edge of the Great Barrier Reef and also on submerged reefs inside the lagoon. Habitat suitability for phototrophs is highest on submerged reefs along the outer-shelf and the deeper flanks of emergent reefs inside the GBR lagoon, while suitability for heterotrophs is highest in the deep waters along the shelf-edge. Models using only geophysical variables consistently outperformed models incorporating environmental data for both phototrophs and heterotrophs. Main Conclusion Extensive submerged coral reef communities that are currently undocumented are likely to occur throughout the Great Barrier Reef. High-quality bathymetry data can be used to identify these reefs, which may play an important role in resilience of the GBR ecosystem to climate change. PMID:23118952

Age & reproduction in three reef - dwelling serranid fishes of the northeastern Gulf of Mexico outer continental shelf: Pronotogrammus martinicensis, Hemanthias vivanus & Serranus phoebe (with preliminary observations on the Pomacentrid fish, Chromis enchrysurus)

USGS Publications Warehouse

Thurman, Paul E.; McBride, Richard S.; Sulak, Kenneth J.; Dennis, George D.

2004-01-01

Specimens of the four study species were collected during cruises to outer-continental shelf reefs of the northeastern Gulf of Mexico. Age was estimated for all serranid species using whole otoliths and C. enchrysurus ages were determined from transverse sections of sagittal otoliths. Ring structure observed on otoliths was validated as having an annual periodicity for P. martinicensis using marginal increment analysis. Ring structure on remaining species was assumed to correspond to age (years). Pronotogrammus martinicensis, H. vivanus, S. phoebe, and C. enchrysurus exhibited maximum ages of 9, 8, 5, and 11, respectively. Spatial variations in size-at-age were observed in P. martinicensis populations. Individuals inhabiting reefs in the Madison-Swanson Reserve area on the West Florida Shelf edge exhibited the fastest growth rates, while the slowest growing P. martinicensis were collected from the Alabama Alps Reef, the farthest west study reef. Pronotogrammus martinicensis and H. vivanus are both protogynous hermaphrodites. Evidence of active spawning was observed in the months from February through July for P. martinicensis, and March and May for H. vivanus. Serranus phoebe was observed to be a simultaneous hermaphroditic capable of spawning year-round. Batch fecundity estimates for P. martinicensis ranged from 149-394 oocytes per fish. Size selectivity was evident in our primary sampling method, hook and line using small tandem bait hooks. Smaller size-classes of all species examined were under-represented in our samples, hindering accurate growth modeling. Due to the protogynous nature of P. martinicensis and H. vivanus, hook and line sampling also tended to select for males. Future descriptions of the reproductive biology of both protogynous species would be more complete if less selective sampling methods could be successfully employed. The data presented here contribute to a better assessment of the fish community of the northeastern Gulf of Mexico. Little information on age and reproduction was previously available for the serranid and pomacentrid species investigated in the present study. These species are important links between both planktonic or benthic food resources and economically-valuable groupers, snappers, and amberjacks. If a catastrophic natural or anthropogenic event occurred in these outer continental shelf reef habitats, the resultant loss of these forage species would immediately impact regional fish production via the food chain. This would be particularly true for reef-resident commercial and recreational fish species that depend extensively upon a diet of small forage fish species. Recovery to a stable community, fully repopulated with small forage fish species, would require at least a decade, possibly longer if the habitat had been substantially degraded during the initial disturbance.

Multibeam mapping of the West Florida Shelf, Gulf of Mexico

USGS Publications Warehouse

Gardner, James V.; Dartnell, Peter; Sulak, Kenneth J.

2002-01-01

A zone of deep-water reefs is thought to extend from the mid and outer shelf south of Mississippi and Alabama to at least the northwestern Florida shelf off Panama City, Florida (Figure 1). The reefs off Mississippi and Alabama are found in water depths of 60 to 120 m (Ludwick and Walton, 1957; Gardner et al., 2001, in press) and were the focus of a multibeam echosounder (MBES) mapping survey by the U.S. Geological Survey (USGS) in 2000 (Gardner et al., 2000, Gardner et al., 2001, in press). If this deep-water-reef trend does exist along the northwestern Florida shelf, then it is critical to determine the accurate geomorphology and reef type that occur because of their importance as benthic habitats for fisheries. Georeferenced high-resolution mapping of bathymetry is a fundamental first step in the study of areas suspected to be critical habitats. Morphology is thought to be critical to defining the distribution of dominant demersal plankton/planktivores communities. Fish faunas of shallow hermatypic reefs have been well studied, but those of deep ahermatypic reefs have been relatively ignored. The ecology of deep-water ahermatypic reefs is fundamentally different from hermatypic reefs because autochthonous intracellular symbiotic zooxanthellae (the carbon source for hermatypic corals) do not form the base of the trophic web in ahermatypic reefs. Instead, exogenous plankton, transported to the reef by currents, serves as the primary carbon source. Thus, one of the principle uses of the morphology data will be to identify whether any reefs found are hermatypic or ahermatypic in origin.

Regional hard coral distribution within geomorphic and reef flat ecological zones determined by satellite imagery of the Xisha Islands, South China Sea

NASA Astrophysics Data System (ADS)

Zuo, Xiuling; Su, Fenzhen; Zhao, Huanting; Zhang, Junjue; Wang, Qi; Wu, Di

2017-05-01

Coral reefs in the Xisha Islands (also known as the Paracel Islands in English), South China Sea, have experienced dramatic declines in coral cover. However, the current regional scale hard coral distribution of geomorphic and ecological zones, essential for reefs management in the context of global warming and ocean acidification, is not well documented. We analyzed data from field surveys, Landsat-8 and GF-1 images to map the distribution of hard coral within geomorphic zones and reef flat ecological zones. In situ surveys conducted in June 2014 on nine reefs provided a complete picture of reef status with regard to live coral diversity, evenness of coral cover and reef health (live versus dead cover) for the Xisha Islands. Mean coral cover was 12.5% in 2014 and damaged reefs seemed to show signs of recovery. Coral cover in sheltered habitats such as lagoon patch reefs and biotic dense zones of reef flats was higher, but there were large regional differences and low diversity. In contrast, the more exposed reef slopes had high coral diversity, along with high and more equal distributions of coral cover. Mean hard coral cover of other zones was <10%. The total Xisha reef system was estimated to cover 1 060 km2, and the emergent reefs covered 787 m2. Hard corals of emergent reefs were considered to cover 97 km2. The biotic dense zone of the reef flat was a very common zone on all simple atolls, especially the broader northern reef flats. The total cover of live and dead coral can reach above 70% in this zone, showing an equilibrium between live and dead coral as opposed to coral and algae. This information regarding the spatial distribution of hard coral can support and inform the management of Xisha reef ecosystems.

Multibeam mapping of the Pinnacles region, Gulf of Mexico

USGS Publications Warehouse

Gardner, James V.; Dartnell, Peter; Sulak, Kenneth J.

2002-01-01

Recent USGS mapping shows an extensive deep (~100 m) reef tract occurs on the Mississippi-Alabama outer continental shelf (Figure 1). The tract, known as "The Pinnacles", is apparently part of a sequence of drowned reef complexes along the "40-fathom" shelf edge of the northern Gulf of Mexico (Ludwick and Walton, 1957). It is critical to determine the accurate geomorphology of these deep-reefs because of their importance as benthic habitats for fisheries. The Pinnacles have previously been mapped using a single-beam echo sounder (Ludwick and Walton,1957), sidescan sonar (Laswell et al., 1990), and the TAMU2 towed single-beam sidescan-sonar system (Anonymous, 1999). These existing studies do not provide the quality of geomorphic data necessary for reasonable habitat studies.

Patterns in Temporal Variability of Temperature, Oxygen and pH along an Environmental Gradient in a Coral Reef

PubMed Central

Guadayol, Òscar; Silbiger, Nyssa J.; Donahue, Megan J.; Thomas, Florence I. M.

2014-01-01

Spatial and temporal environmental variability are important drivers of ecological processes at all scales. As new tools allow the in situ exploration of individual responses to fluctuations, ecologically meaningful ways of characterizing environmental variability at organism scales are needed. We investigated the fine-scale spatial heterogeneity of high-frequency temporal variability in temperature, dissolved oxygen concentration, and pH experienced by benthic organisms in a shallow coastal coral reef. We used a spatio-temporal sampling design, consisting of 21 short-term time-series located along a reef flat-to-reef slope transect, coupled to a long-term station monitoring water column changes. Spectral analyses revealed sharp gradients in variance decomposed by frequency, as well as differences between physically-driven and biologically-reactive parameters. These results highlight the importance of environmental variance at organismal scales and present a new sampling scheme for exploring this variability in situ. PMID:24416364

Near-island biological hotspots in barren ocean basins.

PubMed

Gove, Jamison M; McManus, Margaret A; Neuheimer, Anna B; Polovina, Jeffrey J; Drazen, Jeffrey C; Smith, Craig R; Merrifield, Mark A; Friedlander, Alan M; Ehses, Julia S; Young, Charles W; Dillon, Amanda K; Williams, Gareth J

2016-02-16

Phytoplankton production drives marine ecosystem trophic-structure and global fisheries yields. Phytoplankton biomass is particularly influential near coral reef islands and atolls that span the oligotrophic tropical oceans. The paradoxical enhancement in phytoplankton near an island-reef ecosystem--Island Mass Effect (IME)--was first documented 60 years ago, yet much remains unknown about the prevalence and drivers of this ecologically important phenomenon. Here we provide the first basin-scale investigation of IME. We show that IME is a near-ubiquitous feature among a majority (91%) of coral reef ecosystems surveyed, creating near-island 'hotspots' of phytoplankton biomass throughout the upper water column. Variations in IME strength are governed by geomorphic type (atoll vs island), bathymetric slope, reef area and local human impacts (for example, human-derived nutrient input). These ocean oases increase nearshore phytoplankton biomass by up to 86% over oceanic conditions, providing basal energetic resources to higher trophic levels that support subsistence-based human populations.

Paleotopography and substrate lithology as controls on initiation of Waulsortian Reef Growth: examples from Sacramento Mountains, New Mexico

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ahr, W.M.; Blount, W.M.; George, P.G.

1986-05-01

Frameless mud mounds, usually called Waulsortian reefs, are common in Osagean and Kinderhookian rocks of North America and western Europe. Spectacular Waulsortian reefs crop out in the Sacramento Mountains of New Mexico along 10 mi of continuous exposure, where detailed petrographic studies and field measurements of the strata between the top of the Devonian and the base of the reefs reveal: (1) down-to-the-southwest paleoslope on an uneven, gently dipping ramp; (2) widespread deposition of skeletal packstones and siliciclastics to the northeast; (3) patchy, local thicks of skeletal packstones surrounded by shaly wackestones to the southwest; (4) relict highs on themore » Devonian surface beneath the skeletal packstone pods; (5) clusters of sheetlike reefs weakly associated with paleotopography in the northern outcrops; and (6) large, dome-like individual reefs strongly associated with depositional topography and skeletal packstone/grainstone substrates in the southern outcrops. The pre-reef strata do not exhibit abrupt changes in thickness or lithology to indicate a break in regional slope, and the reefs are not aligned with patterns in thickness of facies that would distinguish shelf-edge environments from lagoonal environments. Like their European counterparts, the Osagean reefs in the Sacramento Mountains grew on a ramp where the nonreef facies were grainy updip and muddy downdip, and reef anatomy varied from sheetlike updip to dome-like downdip. The association between paleotopography, substrate lithology, and the initiation of Waulsortian reef growth provides new information about regional depositional patterns in the Early Mississippian.« less

Balance of constructive and destructive carbonate processes on mesophotic coral reefs

NASA Astrophysics Data System (ADS)

Weinstein, D. K.; Klaus, J. S.; Smith, T. B.; Helmle, K. P.; Marshall, D.

2013-12-01

Net carbonate accumulation of coral reefs is the product of both constructive and destructive processes that can ultimately influence overall reef geomorphology. Differences in these processes with depth may in part explain why the coral growth-light intensity association does no result in the traditionally theorized reef accretion decrease with depth. Until recently, physical sampling limitations had prevented the acquisition of sedimentary data needed to assess in situ carbonate accumulation in mesophotic reefs (30-150 m). Coral framework production, secondary carbonate production (calcareous encrusters), and bioerosion, the three most critical components of net carbonate accumulation, were analyzed in mesophotic reefs more than 10 km south of St. Thomas, U.S. Virgin Islands along a very gradual slope that limits sediment transport and sedimentation. Recently dead samples of the massive coral, Orbicella annularis collected from three structurally different upper mesophotic coral reef habitats (30-45 m) were cut parallel to the primary growth axis to identify density banding through standard x-radiographic techniques. Assuming annual banding, mesophotic linear extension rates were calculated on the order of 0.7-1.5 mm/yr. Weight change of experimental coral substrates exposed for 3 years indicate differing rates (1.1-17.2 g/yr) of bioerosion and secondary accretion between mesophotic sites. When correcting bioerosion rates for high mesophotic skeletal density, carbonate accumulation rates were found to vary significantly between neighboring mesophotic reefs with distinctive structures. Results imply variable rates of mesophotic reef net carbonate accretion with the potential to influence overall reef/platform morphology, including localized mesophotic reef structure.

Coral Reef Community Composition in the Context of Disturbance History on the Great Barrier Reef, Australia

PubMed Central

Graham, Nicholas A. J.; Chong-Seng, Karen M.; Huchery, Cindy; Januchowski-Hartley, Fraser A.; Nash, Kirsty L.

2014-01-01

Much research on coral reefs has documented differential declines in coral and associated organisms. In order to contextualise this general degradation, research on community composition is necessary in the context of varied disturbance histories and the biological processes and physical features thought to retard or promote recovery. We conducted a spatial assessment of coral reef communities across five reefs of the central Great Barrier Reef, Australia, with known disturbance histories, and assessed patterns of coral cover and community composition related to a range of other variables thought to be important for reef dynamics. Two of the reefs had not been extensively disturbed for at least 15 years prior to the surveys. Three of the reefs had been severely impacted by crown-of-thorns starfish outbreaks and coral bleaching approximately a decade before the surveys, from which only one of them was showing signs of recovery based on independent surveys. We incorporated wave exposure (sheltered and exposed) and reef zone (slope, crest and flat) into our design, providing a comprehensive assessment of the spatial patterns in community composition on these reefs. Categorising corals into life history groupings, we document major coral community differences in the unrecovered reefs, compared to the composition and covers found on the undisturbed reefs. The recovered reef, despite having similar coral cover, had a different community composition from the undisturbed reefs, which may indicate slow successional processes, or a different natural community dominance pattern due to hydrology and other oceanographic factors. The variables that best correlated with patterns in the coral community among sites included the density of juvenile corals, herbivore fish biomass, fish species richness and the cover of macroalgae. Given increasing impacts to the Great Barrier Reef, efforts to mitigate local stressors will be imperative to encouraging coral communities to persist into the future. PMID:24983747

Coral Reefs on the Edge? Carbon Chemistry on Inshore Reefs of the Great Barrier Reef

PubMed Central

Uthicke, Sven; Furnas, Miles; Lønborg, Christian

2014-01-01

While increasing atmospheric carbon dioxide (CO2) concentration alters global water chemistry (Ocean Acidification; OA), the degree of changes vary on local and regional spatial scales. Inshore fringing coral reefs of the Great Barrier Reef (GBR) are subjected to a variety of local pressures, and some sites may already be marginal habitats for corals. The spatial and temporal variation in directly measured parameters: Total Alkalinity (TA) and dissolved inorganic carbon (DIC) concentration, and derived parameters: partial pressure of CO2 (pCO2); pH and aragonite saturation state (Ωar) were measured at 14 inshore reefs over a two year period in the GBR region. Total Alkalinity varied between 2069 and 2364 µmol kg−1 and DIC concentrations ranged from 1846 to 2099 µmol kg−1. This resulted in pCO2 concentrations from 340 to 554 µatm, with higher values during the wet seasons and pCO2 on inshore reefs distinctly above atmospheric values. However, due to temperature effects, Ωar was not further reduced in the wet season. Aragonite saturation on inshore reefs was consistently lower and pCO2 higher than on GBR reefs further offshore. Thermodynamic effects contribute to this, and anthropogenic runoff may also contribute by altering productivity (P), respiration (R) and P/R ratios. Compared to surveys 18 and 30 years ago, pCO2 on GBR mid- and outer-shelf reefs has risen at the same rate as atmospheric values (∼1.7 µatm yr−1) over 30 years. By contrast, values on inshore reefs have increased at 2.5 to 3 times higher rates. Thus, pCO2 levels on inshore reefs have disproportionately increased compared to atmospheric levels. Our study suggests that inshore GBR reefs are more vulnerable to OA and have less buffering capacity compared to offshore reefs. This may be caused by anthropogenically induced trophic changes in the water column and benthos of inshore reefs subjected to land runoff. PMID:25295864

Early Pleistocene origin of reefs around Lanai, Hawaii

USGS Publications Warehouse

Webster, Jody M.; Clague, David A.; Faichney, Iain D.E.; Fullagar, Paul D.; Hein, James R.; Moore, James G.; Paull, Charles K.

2010-01-01

A sequence of submerged terraces (L1–L12) offshore Lanai was previously interpreted as reefal, and correlated with a similar series of reef terraces offshore Hawaii island, whose ages are known to be <500 ka. We present bathymetric, observational, lithologic and 51 87Sr/86Sr isotopic measurements for the submerged Lanai terraces ranging from −300 to −1000 m (L3–L12) that indicate that these terraces are drowned reef systems that grew in shallow coral reef to intermediate and deeper fore-reef slope settings since the early Pleistocene. Age estimates based on 87Sr/86Sr isotopic measurements on corals, coralline algae, echinoids, and bulk sediments, although lacking the precision (∼±0.23 Ma) to distinguish the age–depth relationship and drowning times of individual reefs, indicate that the L12–L3 reefs range in age from ∼1.3–0.5 Ma and are therefore about 0.5–0.8 Ma older than the corresponding reefs around the flanks of Hawaii. These new age data, despite their lack of precision and the influence of later-stage submarine diagenesis on some analyzed corals, clearly revise the previous correlations between the reefs off Lanai and Hawaii. Soon after the end of major shield building (∼1.3–1.2 Ma), the Lanai reefs initiated growth and went through a period of rapid subsidence and reef drowning associated with glacial/interglacial cycles similar to that experienced by the Hawaii reefs. However, their early Pleistocene initiation means they experienced a longer, more complex growth history than their Hawaii counterparts.

Reef productivity and preservation during the Late Neogene

NASA Astrophysics Data System (ADS)

Husson, Laurent; Pastier, Anne-Morwenn; Schmitt, Anais; Sarr, Anta-Clarisse; Elliot, Mary; Pedoja, Kevin; Bezos, Antoine

2016-04-01

During the glacial-interglacials cycles that prevailed during Plio-Pleistocence times, the pace of sea level oscillations exerts a major control on coral reef growth and expansion. We designed a numerical model to quantify reef productivity and carbonate preservation that accounts for sea level oscillations, reef growth, erosion and subsequent geomorphological carving. We carried out a parametric study of a variety of processes (reef growth, erosion, local slope, uplift and subsidence, relative sea level, etc) towards a probabilistic analysis of reef productivity and carbonate production. We further test the effect of the frequency and amplitude of sea level oscillations using sea level curves derived from both the 18O isotope record of past sea level change and synthetic sinusoidal sea level curves. Over a typical climate cycle, our model simulations confirm that the rate of sea level change is the primary controlling factor of reef production, as it modifies the productivity by several orders of magnitude. Most importantly, reef productivity increases during periods of sea level rise, and decreases during sea level stands, while conversely, the morphology records the opposite in a misleading fashion: Reef terraces expand during sea level stands due to the joint effects of erosion and patient reef growth at a stationary level until the accommodation space is filled up. On the long-term, over the Plio-Pleistocene period, vertical ground motion also significantly alters the production: moderate uplift or subsidence can boost reef productivity up to tenfold with respect to a stationary coastline. Last, the amplitude and frequency of the sea level oscillations (typically 40 kyrs vs. 100 kyrs periods) moderately impact reef productivity. These results can be ultimately converted into estimates of carbonate production and carbon sequestration during the Late Neogene, provided relative sea level is documented in the tectonically agitated intertropical zone.

27 years of benthic and coral community dynamics on turbid, highly urbanised reefs off Singapore.

PubMed

Guest, J R; Tun, K; Low, J; Vergés, A; Marzinelli, E M; Campbell, A H; Bauman, A G; Feary, D A; Chou, L M; Steinberg, P D

2016-11-08

Coral cover on reefs is declining globally due to coastal development, overfishing and climate change. Reefs isolated from direct human influence can recover from natural acute disturbances, but little is known about long term recovery of reefs experiencing chronic human disturbances. Here we investigate responses to acute bleaching disturbances on turbid reefs off Singapore, at two depths over a period of 27 years. Coral cover declined and there were marked changes in coral and benthic community structure during the first decade of monitoring at both depths. At shallower reef crest sites (3-4 m), benthic community structure recovered towards pre-disturbance states within a decade. In contrast, there was a net decline in coral cover and continuing shifts in community structure at deeper reef slope sites (6-7 m). There was no evidence of phase shifts to macroalgal dominance but coral habitats at deeper sites were replaced by unstable substrata such as fine sediments and rubble. The persistence of coral dominance at chronically disturbed shallow sites is likely due to an abundance of coral taxa which are tolerant to environmental stress. In addition, high turbidity may interact antagonistically with other disturbances to reduce the impact of thermal stress and limit macroalgal growth rates.

27 years of benthic and coral community dynamics on turbid, highly urbanised reefs off Singapore

PubMed Central

Guest, J. R.; Tun, K.; Low, J.; Vergés, A.; Marzinelli, E. M.; Campbell, A. H.; Bauman, A. G.; Feary, D. A.; Chou, L. M.; Steinberg, P. D.

2016-01-01

Coral cover on reefs is declining globally due to coastal development, overfishing and climate change. Reefs isolated from direct human influence can recover from natural acute disturbances, but little is known about long term recovery of reefs experiencing chronic human disturbances. Here we investigate responses to acute bleaching disturbances on turbid reefs off Singapore, at two depths over a period of 27 years. Coral cover declined and there were marked changes in coral and benthic community structure during the first decade of monitoring at both depths. At shallower reef crest sites (3–4 m), benthic community structure recovered towards pre-disturbance states within a decade. In contrast, there was a net decline in coral cover and continuing shifts in community structure at deeper reef slope sites (6–7 m). There was no evidence of phase shifts to macroalgal dominance but coral habitats at deeper sites were replaced by unstable substrata such as fine sediments and rubble. The persistence of coral dominance at chronically disturbed shallow sites is likely due to an abundance of coral taxa which are tolerant to environmental stress. In addition, high turbidity may interact antagonistically with other disturbances to reduce the impact of thermal stress and limit macroalgal growth rates. PMID:27824083

Wave setup over a Pacific Island fringing reef

NASA Astrophysics Data System (ADS)

Vetter, O.; Becker, J. M.; Merrifield, M. A.; Pequignet, A.-C.; Aucan, J.; Boc, S. J.; Pollock, C. E.

2010-12-01

Measurements obtained across a shore-attached, fringing reef on the southeast coast of the island of Guam are examined to determine the relationship between incident waves and wave-driven setup during storm and nonstorm conditions. Wave setup on the reef flat correlates well (r > 0.95) and scales near the shore as approximately 35% of the incident root mean square wave height in 8 m water depth. Waves generated by tropical storm Man-Yi result in a 1.3 m setup during the peak of the storm. Predictions based on traditional setup theory (steady state, inviscid cross-shore momentum and depth-limited wave breaking) and an idealized model of localized wave breaking at the fore reef are in agreement with the observations. The reef flat setup is used to estimate a similarity parameter at breaking that is in agreement with observations from a steeply sloping sandy beach. A weak (˜10%) increase in setup is observed across the reef flat during wave events. The inclusion of bottom stress in the cross-shore momentum balance may account for a portion of this signal, but this assessment is inconclusive as the reef flat currents in some cases are in the wrong direction to account for the increase. An independent check of fringing reef setup dynamics is carried out for measurements at the neighboring island of Saipan with good agreement.

Radiant energy collector

DOEpatents

McIntire, William R.

1983-01-01

A cylindrical radiant energy collector is provided which includes a reflector spaced apart from an energy absorber. The reflector is of a particular shape which ideally eliminates gap losses. The reflector includes a plurality of adjacent facets of V shaped segments sloped so as to reflect all energy entering between said absorber and said reflector onto said absorber. The outer arms of each facet are sloped to reflect one type of extremal ray in a line substantially tangent to the lowermost extremity of the energy absorber. The inner arms of the facets are sloped to reflect onto the absorber all rays either falling directly thereon or as a result of reflection from an outer arm.

Experiments and Phase-field Modeling of Hydrate Growth at the Interface of Migrating Gas Fingers

NASA Astrophysics Data System (ADS)

Fu, X.; Jimenez-Martinez, J.; Porter, M. L.; Cueto-Felgueroso, L.; Juanes, R.

2016-12-01

The first indisputable observation of a large expanse of intact seamount exposed in the inner slope of any convergent plate margin was in June 2016. The only other potential evidence for an exposed subducted seamount was observations from a series of Nautile submersible dives in the 1980's. On these dives, brecciated boulders of Cretaceous reefal debris lay on the deepest 30 m of the inner slope of the Japan Trench near Daiichi-Kashima Seamount. Because the subducting plate within 60 to 120 km outboard of a trench is usually heavily faulted, it has been suggested that seamounts impinging on a forearc region should be heavily deformed. This is not what we observed in the inner Mariana Trench during the third leg of the NOAA ship Okeanos Explorer's expedition to the Mariana subduction region. In June 2016 we recorded 275 m of exposed reef on Dive 4 (at 20.5°N) with the NOAA "Deep Discoverer" remotely operated vehicle (D-2 ROV), starting at 5,995 m on the inner slope of the Mariana Trench. The deposits are morphologically identical to observations on Dive 16 on a summit escarpment of the Cretaceous Fryer Guyot ( 20.5°N) just east of the trench. We interpret the inner trench slope exposure to be part of a Cretaceous reef complex of a seamount partially subducted beneath the overriding plate edge. Large-scale differences in the two exposures are the prevalence of vertical debris chutes between steep ridges seen in Dive 4 versus smoother, steeper slopes on Dive 16. The reefal sequences on Dive 16 show numerous fossils including bivalves in place, and layers with rudist morphology (S. Stanley, 2017, pers. comm.) in alternating tan and white bands. Similar sequences were observed on Dive 4. Slump scars observed on Dive 4 indicate mass wasting, but there is no indication of shearing or large-scale deformation. Thus, we interpret the exposure to reveal a large section of the reef complex that is partially subducted and largely intact beneath the overriding Philippine Sea Plate edge.

A Subducted Seamount Revealed: 2016, NOAA OER Deepwater Exploration of the Marianas

NASA Astrophysics Data System (ADS)

Fryer, P. B.; Kelley, C.; Pomponi, S. A.; Glickson, D.; Amon, D.

2017-12-01

The first indisputable observation of a large expanse of intact seamount exposed in the inner slope of any convergent plate margin was in June 2016. The only other potential evidence for an exposed subducted seamount was observations from a series of Nautile submersible dives in the 1980's. On these dives, brecciated boulders of Cretaceous reefal debris lay on the deepest 30 m of the inner slope of the Japan Trench near Daiichi-Kashima Seamount. Because the subducting plate within 60 to 120 km outboard of a trench is usually heavily faulted, it has been suggested that seamounts impinging on a forearc region should be heavily deformed. This is not what we observed in the inner Mariana Trench during the third leg of the NOAA ship Okeanos Explorer's expedition to the Mariana subduction region. In June 2016 we recorded 275 m of exposed reef on Dive 4 (at 20.5°N) with the NOAA "Deep Discoverer" remotely operated vehicle (D-2 ROV), starting at 5,995 m on the inner slope of the Mariana Trench. The deposits are morphologically identical to observations on Dive 16 on a summit escarpment of the Cretaceous Fryer Guyot ( 20.5°N) just east of the trench. We interpret the inner trench slope exposure to be part of a Cretaceous reef complex of a seamount partially subducted beneath the overriding plate edge. Large-scale differences in the two exposures are the prevalence of vertical debris chutes between steep ridges seen in Dive 4 versus smoother, steeper slopes on Dive 16. The reefal sequences on Dive 16 show numerous fossils including bivalves in place, and layers with rudist morphology (S. Stanley, 2017, pers. comm.) in alternating tan and white bands. Similar sequences were observed on Dive 4. Slump scars observed on Dive 4 indicate mass wasting, but there is no indication of shearing or large-scale deformation. Thus, we interpret the exposure to reveal a large section of the reef complex that is partially subducted and largely intact beneath the overriding Philippine Sea Plate edge.

Numerical modeling of the impact of sea-level rise on fringing coral reef hydrodynamics and sediment transport

USGS Publications Warehouse

Storlazzi, C.D.; Elias, E.; Field, M.E.; Presto, M.K.

2011-01-01

Most climate projections suggest that sea level may rise on the order of 0.5-1.0 m by 2100; it is not clear, however, how fluid flow and sediment dynamics on exposed fringing reefs might change in response to this rapid sea-level rise. Coupled hydrodynamic and sediment-transport numerical modeling is consistent with recent published results that suggest that an increase in water depth on the order of 0.5-1.0 m on a 1-2 m deep exposed fringing reef flat would result in larger significant wave heights and setup, further elevating water depths on the reef flat. Larger waves would generate higher near-bed shear stresses, which, in turn, would result in an increase in both the size and the quantity of sediment that can be resuspended from the seabed or eroded from adjacent coastal plain deposits. Greater wave- and wind-driven currents would develop with increasing water depth, increasing the alongshore and offshore flux of water and sediment from the inner reef flat to the outer reef flat and fore reef where coral growth is typically greatest. Sediment residence time on the fringing reef flat was modeled to decrease exponentially with increasing sea-level rise as the magnitude of sea-level rise approached the mean water depth over the reef flat. The model results presented here suggest that a 0.5-1.0 m rise in sea level will likely increase coastal erosion, mixing and circulation, the amount of sediment resuspended, and the duration of high turbidity on exposed reef flats, resulting in decreased light availability for photosynthesis, increased sediment-induced stress on the reef ecosystem, and potentially affecting a number of other ecological processes.

Studies on Halimeda

NASA Astrophysics Data System (ADS)

Drew, Edward A.; Abel, Kay M.

1988-03-01

Large areas of the inter-reefal seabed in the Great Barrier Reef are carpeted with vegetation composed almost entirely of the green calcareous alga Halineda. These meadows occur principally in the northern sections between 11°30' and 15°35'S at depths of 20 to 40 m, but there are also some in the central and southern sections, where they have been found at depths down to 96 m. The vegetation is dominated by the same sprawling Halimeda species that are common on coral reefs in this region. However, on reefs these species grow on solid substrata, not soft sediments like the Halimeda-rich gravels that underlie the meadows. A total of 12 Halimeda species, together with two Udotea and one Penicillus species, are characteristic components of the shallow meadows. Below 50 m depth, species composition is restricted to only two major components. One, H. copiosa, is also important shallower, but the other is an unusually large and heavily calcified form of H. fragilis, a species that is normally a minor, fragile component of the shallow meadows. The maximum biomass found in these meadows was 4637 gm2 of calcareous algae, although the thean for vegetated areas was 525 gm2. These meadows are confined to the nutrient-depleted waters of the outer continental shelf just inside the outer barrier reefs, and are usually associated with distinct shoaling of the seabed caused by accumulation of thick deposits of calcareous Halimeda segments. The meadows are probably supported by very localized upwelling of nutrients from the adjacent Coral Sea onto the shelf, where they enrich the otherwise nutrient-depleted waters.

Assessing the spatial distribution of coral bleaching using small unmanned aerial systems

NASA Astrophysics Data System (ADS)

Levy, Joshua; Hunter, Cynthia; Lukacazyk, Trent; Franklin, Erik C.

2018-06-01

Small unmanned aerial systems (sUAS) are an affordable, effective complement to existing coral reef monitoring and assessment tools. sUAS provide repeatable low-altitude, high-resolution photogrammetry to address fundamental questions of spatial ecology and community dynamics for shallow coral reef ecosystems. Here, we qualitatively describe the use of sUAS to survey the spatial characteristics of coral cover and the distribution of coral bleaching across patch reefs in Kānéohe Bay, Hawaii, and address limitations and anticipated technology advancements within the field of UAS. Overlapping sub-decimeter low-altitude aerial reef imagery collected during the 2015 coral bleaching event was used to construct high-resolution reef image mosaics of coral bleaching responses on four Kānéohe Bay patch reefs, totaling 60,000 m2. Using sUAS imagery, we determined that paled, bleached and healthy corals on all four reefs were spatially clustered. Comparative analyses of data from sUAS imagery and in situ diver surveys found as much as 14% difference in coral cover values between survey methods, depending on the size of the reef and area surveyed. When comparing the abundance of unhealthy coral (paled and bleached) between sUAS and in situ diver surveys, we found differences in cover from 1 to 49%, depending on the depth of in situ surveys, the percent of reef area covered with sUAS surveys and patchiness of the bleaching response. This study demonstrates the effective use of sUAS surveys for assessing the spatial dynamics of coral bleaching at colony-scale resolutions across entire patch reefs and evaluates the complementarity of data from both sUAS and in situ diver surveys to more accurately characterize the spatial ecology of coral communities on reef flats and slopes.

Micro-topography mediates interactions between corals, algae, and herbivorous fishes on coral reefs

NASA Astrophysics Data System (ADS)

Brandl, S. J.; Hoey, A. S.; Bellwood, D. R.

2014-06-01

Processes occurring during the early life stages of corals are important for the replenishment of coral assemblages and the resilience of coral reefs. However, the factors influencing early life stages of corals are not well understood, and the role of micro-topographic complexity for habitat associations of juvenile corals is largely unexplored. This study investigated the microhabitat distribution patterns of early life stages of corals and a potential macroalgal competitor ( Turbinaria ornata) across two reef zones (reef crest and outer reef flat) on Lizard Island, Great Barrier Reef. In both reef zones, both corals and T. ornata were significantly more abundant in concealed microhabitats than in semi-concealed or open microhabitats (GLMM: P < 0.001). The prevalence of juvenile corals and T. ornata within concealed environments suggests that they might be effective refuges from grazing by herbivorous fishes. The density of juvenile corals was positively related, and density of T. ornata negatively related to the abundance of two groups of herbivorous fishes, pairing rabbitfishes, and surgeonfishes in the genus Zebrasoma (BEST ENV-BIO: r s = 0.72, P < 0.01), which feed in concealed microhabitats. This correlative evidence suggests that crevices may be important for early life stages of both coral and macroalgae, and that a specific suite of crevice-feeding fishes may influence benthic community dynamics in these microhabitats.

Incident wave, infragravity wave, and non-linear low-frequency bore evolution across fringing coral reefs

NASA Astrophysics Data System (ADS)

Storlazzi, C. D.; Griffioen, D.; Cheriton, O. M.

2016-12-01

Coral reefs have been shown to significantly attenuate incident wave energy and thus provide protection for 100s of millions of people globally. To better constrain wave dynamics and wave-driven water levels over fringing coral reefs, a 4-month deployment of wave and tide gauges was conducted across two shore-normal transects on Roi-Namur Island and two transects on Kwajalein Island in the Republic of the Marshall Islands. At all locations, although incident wave (periods <25 s) heights were an order of magnitude greater than infragravity wave (periods > 250 s) heights on the outer reef flat just inshore of the zone of wave breaking, the infragravity wave heights generally equaled the incident wave heights by the middle of the reef flat and exceeded the incident wave heights on the inner reef flat by the shoreline. The infragravity waves generally were asymmetric, positively skewed, bore-like forms with incident-band waves riding the infragravity wave crest at the head of the bore; these wave packets have similar structure to high-frequency internal waves on an internal wave bore. Bore height was shown to scale with water depth, offshore wave height, and offshore wave period. For a given tidal elevation, with increasing offshore wave heights, such bores occurred more frequently on the middle reef flat, whereas they occurred less frequently on the inner reef flat. Skewed, asymmetric waves are known to drive large gradients in velocity and shear stress that can transport material onshore. Thus, a better understanding of these low-frequency, energetic bores on reef flats is critical to forecasting how coral reef-lined coasts may respond to sea-level rise and climate change.

Survivorship and feeding preferences among size classes of outplanted sea urchins, Tripneustes gratilla, and possible use as biocontrol for invasive alien algae

PubMed Central

Ringang, Rory R.; Cantero, Sean Michael A.; Toonen, Robert J.

2015-01-01

We investigate the survivorship, growth and diet preferences of hatchery-raised juvenile urchins, Tripneustes gratilla, to evaluate the efficacy of their use as biocontrol agents in the efforts to reduce alien invasive algae. In flow-through tanks, we measured urchin growth rates, feeding rates and feeding preferences among diets of the most common invasive algae found in Kāneʻohe Bay, Hawaiʻi: Acanthophora spicifera, Gracilaria salicornia, Eucheuma denticulatum and Kappaphycus clade B. Post-transport survivorship of outplanted urchins was measured in paired open and closed cages in three different reef environments (lagoon, reef flat and reef slope) for a month. Survivorship in closed cages was highest on the reef flat (∼75%), and intermediate in the lagoon and reef slope (∼50%). In contrast, open cages showed similar survivorship on the reef flat and in the lagoon, but only 20% of juvenile urchins survived in open cages placed on the reef slope. Urchins grew significantly faster on diets of G. salicornia (1.58 mm/week ± 0.14 SE) and Kappaphycus clade B (1.69 ± 0.14 mm/wk) than on E. denticulatum (0.97 ± 0.14 mm/wk), with intermediate growth when fed on A. spicifera (1.23 ± 0.11 mm/wk). Interestingly, urchins display size-specific feeding preferences. In non-choice feeding trials, small urchins (17.5–22.5 mm test diameter) consumed G. salicornia fastest (6.08 g/day ± 0.19 SE), with A. spicifera (4.25 ± 0.02 g/day) and Kappaphycus clade B (3.83 ± 0.02 g/day) intermediate, and E. denticulatum was clearly the least consumed (2.32 ± 0.37 g/day). Medium-sized (29.8–43.8 mm) urchins likewise preferentially consumed G. salicornia (12.60 ± 0.08 g/day), with less clear differences among the other species in which E. denticulatum was still consumed least (9.35 ± 0.90 g/day). In contrast, large urchins (45.0–65.0 mm) showed no significant preferences among the different algae species at all (12.43–15.24 g/day). Overall consumption rates in non-choice trials were roughly equal to those in the choice trials, but differences among feeding rates on each species were not predictive of feeding preferences when urchins were presented all four species simultaneously. In the choice feeding trials, both small and medium urchins clearly preferred A. spicifera over all other algae (roughly twice as much consumed as any other species). Again, however, differences were less pronounced among adult urchins, with adults showing a significant preference for A. spicifera and Kappaphycus clade B compared to the other two algal species. These findings indicate that outplanted urchins are surviving on the reef flats and eating a variety of alien invasive algae as intended. Although juvenile urchins show stronger feeding preferences, these animals grow quickly, and adult urchins are more generalist herbivores that consume all four alien invasive algae. PMID:26401450

Origin of Silurian reefs in the Alexander Terrane of southeastern Alaska

DOE Office of Scientific and Technical Information (OSTI.GOV)

Soja, C.M.

1991-04-01

Lower to Upper Silurian (upper Llandovery-Ludlow) limestones belonging to the Heceta Formation record several episodes of reef growth in the Alexander terrane of southeastern Alaska. As the oldest carbonates of wide-spread distribution in the region, the Heceta limestones represent the earliest development of a shallow-marine platform within the Alexander arc and the oldest foundation for reef evolution. These deposits provide important insights into the dynamic processes, styles, and bathymetry associated with reef growth in tectonically active oceanic islands. Massive stromatoporoids, corals, and red algae are preserved in fragmental rudstones and represent a fringing reef that formed at the seaward edgemore » of the incipient marine shelf. Accessory constituents in this reef include crinoids and the cyanobacterium Girvanella. Small biostromes were constructed by ramose corals and stromatoporoids on oncolitic substrates in backreef or lagoonal environments. These buildups were associated with low-diversity assemblages of brachiopods and with gastropods, amphiporids, calcareous algae and cyanobacteria. Microbial boundstones reflect the widespread encrustation of cyanobacteria and calcified microproblematica on shelly debris as stromatolitic mats that resulted in the development of a stromatactoid-bearing mud mound and a barrier reef complex. Epiphytaceans, other microbes, and aphrosalpingid sponges were the primary frame-builders of the barrier reefs. These buildups attained significant relief at the shelf margin and shed detritus as slumped blocks and debris flows into deep-water sites along the slope. The similarity of these stromatolitic-aphrosalpingid reefs to those from Siluro-Devonian strata of autochthonous southwestern Alaska suggests paleobiogeographic ties of the Alexander terrane to cratonal North America during the Silurian.« less

Combined infragravity wave and sea-swell runup over fringing reefs by super typhoon Haiyan

NASA Astrophysics Data System (ADS)

Shimozono, Takenori; Tajima, Yoshimitsu; Kennedy, Andrew B.; Nobuoka, Hisamichi; Sasaki, Jun; Sato, Shinji

2015-06-01

Super typhoon Haiyan struck the Philippines on 8 November 2013, marking one of the strongest typhoons at landfall in recorded history. Extreme storm waves attacked the Pacific coast of Eastern Samar where the violent typhoon first made landfall. Our field survey confirmed that storm overwash heights of 6-14 m above mean sea level were distributed along the southeastern coast and extensive inundation occurred in some coastal villages in spite of natural protection by wide fringing reefs. A wave model based on Boussinesq-type equations is constructed to simulate wave transformation over shallow fringing reefs and validated against existing laboratory data. Wave propagation and runup on the Eastern Samar coast are then reproduced using offshore boundary conditions based on a wave hindcast. The model results suggest that extreme waves on the shore are characterized as a superposition of the infragravity wave and sea-swell components. The balance of the two components is strongly affected by the reef width and beach slope through wave breaking, frictional dissipation, reef-flat resonances, and resonant runup amplification. Therefore, flood characteristics significantly differ from site to site due to a large variation of the two topographic parameters on the hilly coast. Strong coupling of infragravity waves and sea swells produces extreme runup on steep beaches fronted by narrow reefs, whereas the infragravity waves become dominant over wide reefs and they evolve into bores on steep beaches.

Octocoral Species Assembly and Coexistence in Caribbean Coral Reefs.

PubMed

Velásquez, Johanna; Sánchez, Juan A

2015-01-01

What are the determinant factors of community assemblies in the most diverse ecosystem in the ocean? Coral reefs can be divided in continental (i.e., reefs that develop on the continental shelf, including siliciclastic reefs) and oceanic (i.e., far off the continental shelf, usually on volcanic substratum); whether or not these habitat differences impose community-wide ecological divergence or species exclusion/coexistence with evolutionary consequences, is unknown. Studying Caribbean octocorals as model system, we determined the phylogenetic community structure in a coral reef community, making emphasis on species coexistence evidenced on trait evolution and environmental feedbacks. Forty-nine species represented in five families constituted the species pool from which a phylogenetic tree was reconstructed using mtDNA. We included data from 11 localities in the Western Caribbean (Colombia) including most reef types. To test diversity-environment and phenotype-environment relationships, phylogenetic community structure and trait evolution we carried out comparative analyses implementing ecological and evolutionary approaches. Phylogenetic inferences suggest clustering of oceanic reefs (e.g., atolls) contrasting with phylogenetic overdispersion of continental reefs (e.g., reefs banks). Additionally, atolls and barrier reefs had the highest species diversity (Shannon index) whereas phylogenetic diversity was higher in reef banks. The discriminant component analysis supported this differentiation between oceanic and continental reefs, where continental octocoral species tend to have greater calyx apertures, thicker branches, prominent calyces and azooxanthellate species. This analysis also indicated a clear separation between the slope and the remaining habitats, caused by the presence or absence of Symbiodinium. K statistic analysis showed that this trait is conserved as well as the branch shape. There was strong octocoral community structure with opposite diversity and composition patterns between oceanic and continental reefs. Even habitats with similar depths and overall environmental conditions did not share similar communities between oceanic and continental reefs. This indicates a strong regional influence over the local communities, probably due to water transparency differences between major reef types, i.e., oceanic vs. continental shelf-neritic. This was supported by contrasting patterns found in morphology, composition and evolutionary history of the species between atolls and reef banks.

Octocoral Species Assembly and Coexistence in Caribbean Coral Reefs

PubMed Central

Velásquez, Johanna; Sánchez, Juan A.

2015-01-01

Background What are the determinant factors of community assemblies in the most diverse ecosystem in the ocean? Coral reefs can be divided in continental (i.e., reefs that develop on the continental shelf, including siliciclastic reefs) and oceanic (i.e., far off the continental shelf, usually on volcanic substratum); whether or not these habitat differences impose community-wide ecological divergence or species exclusion/coexistence with evolutionary consequences, is unknown. Methods Studying Caribbean octocorals as model system, we determined the phylogenetic community structure in a coral reef community, making emphasis on species coexistence evidenced on trait evolution and environmental feedbacks. Forty-nine species represented in five families constituted the species pool from which a phylogenetic tree was reconstructed using mtDNA. We included data from 11 localities in the Western Caribbean (Colombia) including most reef types. To test diversity-environment and phenotype-environment relationships, phylogenetic community structure and trait evolution we carried out comparative analyses implementing ecological and evolutionary approaches. Results Phylogenetic inferences suggest clustering of oceanic reefs (e.g., atolls) contrasting with phylogenetic overdispersion of continental reefs (e.g., reefs banks). Additionally, atolls and barrier reefs had the highest species diversity (Shannon index) whereas phylogenetic diversity was higher in reef banks. The discriminant component analysis supported this differentiation between oceanic and continental reefs, where continental octocoral species tend to have greater calyx apertures, thicker branches, prominent calyces and azooxanthellate species. This analysis also indicated a clear separation between the slope and the remaining habitats, caused by the presence or absence of Symbiodinium. K statistic analysis showed that this trait is conserved as well as the branch shape. Discussion There was strong octocoral community structure with opposite diversity and composition patterns between oceanic and continental reefs. Even habitats with similar depths and overall environmental conditions did not share similar communities between oceanic and continental reefs. This indicates a strong regional influence over the local communities, probably due to water transparency differences between major reef types, i.e., oceanic vs. continental shelf-neritic. This was supported by contrasting patterns found in morphology, composition and evolutionary history of the species between atolls and reef banks. PMID:26177191

Near-island biological hotspots in barren ocean basins

PubMed Central

Gove, Jamison M.; McManus, Margaret A.; Neuheimer, Anna B.; Polovina, Jeffrey J.; Drazen, Jeffrey C.; Smith, Craig R.; Merrifield, Mark A.; Friedlander, Alan M.; Ehses, Julia S.; Young, Charles W.; Dillon, Amanda K.; Williams, Gareth J.

2016-01-01

Phytoplankton production drives marine ecosystem trophic-structure and global fisheries yields. Phytoplankton biomass is particularly influential near coral reef islands and atolls that span the oligotrophic tropical oceans. The paradoxical enhancement in phytoplankton near an island-reef ecosystem—Island Mass Effect (IME)—was first documented 60 years ago, yet much remains unknown about the prevalence and drivers of this ecologically important phenomenon. Here we provide the first basin-scale investigation of IME. We show that IME is a near-ubiquitous feature among a majority (91%) of coral reef ecosystems surveyed, creating near-island ‘hotspots' of phytoplankton biomass throughout the upper water column. Variations in IME strength are governed by geomorphic type (atoll vs island), bathymetric slope, reef area and local human impacts (for example, human-derived nutrient input). These ocean oases increase nearshore phytoplankton biomass by up to 86% over oceanic conditions, providing basal energetic resources to higher trophic levels that support subsistence-based human populations. PMID:26881874

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hurst, J.M.; Lapointe, P.A.; Nyein, U.K.

Three Oligocene-Miocene carbonate depositional morphologies commonly occur: shoals, reefs, and isolated platforms. Lenticular shoals (0-25 m thick, 1 km long) are stacked and intercalated with siliciclastic mudstones. Facies include trough/festoon cross-bedded benthic foram grainstones passing laterally and vertically into red-algal dominated graded-laminated beds, bioturbated silty calcareous mudstone, and siliciclastic sandy foram wackestone and packstone. The morphology and facies are hydrodynamically controlled. Pinnacle reefs (1-2 km[sup 2]) dominated by red-algae, branching corals, and large mollusks occur on structure or aligned within shelf mudstones. The latter location reflects low sedimentation rates and hydrodynamic control. Isolated platforms (up to 150 km[sup 2]) aremore » environmental mosaics of marginal path reefs and shoals, interior lagoons, and islands plus marginal slopes. Facies are similar to shoals and reefs except there are more muddy fabrics and less high-energy facies. They develop on tilted fault blocks or eroded submerged arcs in the offshore Gulf of Martaban, distal to the ancestral Irrawaddy delta.« less

Standing crop and sediment production of reef-dwelling foraminifera on O'ahu, Hawai'i

USGS Publications Warehouse

Harney, J.N.; Hallock, P.; Fletcher, C. H.; Richmond, B.M.

1999-01-01

Most of O'ahu's nearshore and beach sands are highly calcareous and of biogenic origin. The pale-colored constituent grains are the eroded remains of carbonate shells and skeletons produced by marine organisms living atop the island's fringing reefs and in the shallow waters near shore. Previous studies have shown that the tests of symbiont-bearing benthic foraminifera compose a substantial portion (up to one-fourth) of these organically produced sands. We sampled a variety of reef flat and slope habitats to obtain standing-crop data and production estimates for several sand-producing genera of reef-dwelling foraminifera. We found that modern communities of these shelled protists occur in dense numbers islandwide, reaching densities up to 105 individuals per square meter of suitable substrate in the more productive habitats. Further research on the contribution of foraminifera to beach, nearshore, and offshore sands is planned for O'ahu and neighboring islands to describe their roles in the sediment budget more completely.

Formation Mechanisms for Spur and Groove Features on Fringing Reefs

NASA Astrophysics Data System (ADS)

Bramante, J. F.; Ashton, A. D.; Perron, J. T.

2016-12-01

Spur and groove systems (SAGs) are ubiquitous morphological features found on fore-reef slopes globally. SAGs consist of parallel, roughly shore-normal ridges of actively growing coral and coralline algae (spurs) separated by offshore-sloping depressions typically carpeted by a veneer of sediment (grooves). Although anecdotal observations and recent statistical analyses have reported correlations between wave exposure and the distribution of SAGs on fore-reef slopes, the physical mechanisms driving SAG formation remain poorly understood. For example, there remains significant debate regarding the importance of coral growth versus bed erosion for SAG formation. Here we investigate a hypothesis that SAG formation is controlled by feedbacks between sediment production and diffusion and coral growth. Using linear stability analysis, we find that sediment production, coral growth, and the feedbacks between them are unable to produce stable periodic structures without a sediment sink. However, if incipient grooves act as conduits for sediment transport offshore, a positive feedback can develop as the groove bed erodes through wave-driven abrasion during offshore transport. Eventually a negative feedback slows groove deepening when the groove bed is armored by sediment, and the groove bed relaxes to a sediment-veneered equilibrium profile analogous to sediment-rich shorefaces. To test this hypothesis, we apply a numerical model that incorporates coral growth and sediment production, sediment diffusion, non-linear wave-driven abrasion, and sediment advection offshore. This model produces the periodic, linear features characteristic of SAG morphology. The relative magnitude of growth, production, diffusion, abrasion, and advection rates affect periodic spacing or wavelength of the modeled SAGs. Finally, we evaluate the ability of the model to replicate geographical variability in SAG characteristics using previously published datasets and reanalysis wave data.

Fine-scale hydrodynamics influence the spatio-temporal distribution of harbour porpoises at a coastal hotspot

NASA Astrophysics Data System (ADS)

Jones, A. R.; Hosegood, P.; Wynn, R. B.; De Boer, M. N.; Butler-Cowdry, S.; Embling, C. B.

2014-11-01

The coastal Runnelstone Reef, off southwest Cornwall (UK), is characterised by complex topography and strong tidal flows and is a known high-density site for harbour porpoise (Phocoena phocoena); a European protected species. Using a multidisciplinary dataset including: porpoise sightings from a multi-year land-based survey, Acoustic Doppler Current Profiling (ADCP), vertical profiling of water properties and high-resolution bathymetry; we investigate how interactions between tidal flow and topography drive the fine-scale porpoise spatio-temporal distribution at the site. Porpoise sightings were distributed non-uniformly within the survey area with highest sighting density recorded in areas with steep slopes and moderate depths. Greater numbers of sightings were recorded during strong westward (ebbing) tidal flows compared to strong eastward (flooding) flows and slack water periods. ADCP and Conductivity Temperature Depth (CTD) data identified fine-scale hydrodynamic features, associated with cross-reef tidal flows in the sections of the survey area with the highest recorded densities of porpoises. We observed layered, vertically sheared flows that were susceptible to the generation of turbulence by shear instability. Additionally, the intense, oscillatory near surface currents led to hydraulically controlled flow that transitioned from subcritical to supercritical conditions; indicating that highly turbulent and energetic hydraulic jumps were generated along the eastern and western slopes of the reef. The depression and release of isopycnals in the lee of the reef during cross-reef flows revealed that the flow released lee waves during upslope currents at specific phases of the tidal cycle when the highest sighting rates were recorded. The results of this unique, fine-scale field study provide new insights into specific hydrodynamic features, produced through tidal forcing, that may be important for creating predictable foraging opportunities for porpoises at a local scale. Information on the functional mechanisms linking porpoise distribution to static and dynamic physical habitat variables is extremely valuable to the monitoring and management of the species within the context of European conservation policies and marine renewable energy infrastructure development.

Water-mass dynamics of an Arctic cold-water coral reef: First results from a new ocean observatory system

NASA Astrophysics Data System (ADS)

Flögel, Sascha; Karstensen, Johannes; Linke, Peter; Pfannkuche, Olaf; Ashastina, Kseniia; Dullo, Christian

2015-04-01

Cold-water coral reefs occur at various sites along the European continental margin, like in the Mediterranean Sea, on carbonate mounds West off Ireland, or at shallower depths between 100 and 350 m on the Norwegian shelf. Their occurrence is related to different physical parameters like temperature, salinity, seawater density, dissolved oxygen, and to other environmental parameters such as internal wave activity, nutrient supply, strong currents, which keep sediment input low, etc. Here, we present first results from a long-term observation in one of the nortnermost cold-water coral reefs at 70.5°N - the Stjernsund in northern Norway. The Stjernsund is a 30 km long and up to 3.5 km wide sound connecting the open North Atlantic with a fjord system. A deep-seated SW-NE oriented morainic sill with varying depths (203-236 m) splits the more than 400 m deep sound into two troughs. Living Lophelia pertusa dominated reef complexes occur on the NW slope between 235 and 305 m water depths and on the SE slope between 245 and 280 m. To investigate the dominating physical and biogeochemical boundary conditions a new modular seafloor observatory, MoLab, consisting of five sea-floor observatories and two moorings was deployed for 100 days during the summer of 2012. The various lander systems and moorimgs were equipped with sensors to measure current velocities and directions, temperature, salinity, pressure, pH, turbidity, fluorescence, oxygen concentration and saturation. Results showed that near-bottom salinities, temperature and current velocities are dominated by a semi-diurnal tidal forcing (pronounced M2 constituent), which cause vertical water mass movements of up to 100 m. These influence large parts of the living reef. Closer examination revealed overturning cells on the south-eastern slope of the sill during high tide, when Atlantic Water flows over the sill. The appearance of living cold-water corals is limited to a density envelope of sigma-theta=27.25-27.50 kg/m-3, which marks the boundary between Norwegian Coastal Water and Atlantic Water. Globally, Lophelia pertusa lives in waters covering a wide range of physical and biogeochemical parameters. This new data sets indicates parameter ranges, of e.g. current velocities (15-30 cm/s), temperature (6.0-6.8°C) and salinity (34.1-34.8), pH (8.22-7.39), turbidity (0.1-0.9 NTU), and oxygen concentration (300-339 μM) that are in agreement with other cold-water coral reefs in the NE Atlantic. The overall circulation depicts a complex dynamic system with pronounced differences not only vertically, but also important horizontal changes on top of the sill.

The Role of Ocean Exploration and Research in the Creation and Management of Marine Protected Areas (MPAs)

NASA Astrophysics Data System (ADS)

Valette-Silver, N. J.; Pomponi, S.; Smith, J. R.; Potter, J.

2012-12-01

Over the past decades, the NOAA Office of Ocean Exploration and Research (OER), through its programs (Ocean Exploration Program and National Undersea Research Program), and in collaboration with its federal and academic partners, has contributed to the discovery of new ocean features, species, ecosystems, habitats and processes. These new discoveries have led to the development of new policies and management actions. Exploration, research and technology advancement have contributed to the characterization and the designation of marine sanctuaries, reserves, restricted fishing areas, and monuments in US waters. For example, the collaborative efforts of OER and partners from the Cooperative Institute for Ocean Exploration, Research and Technology (CIOERT) have resulted in the discovery of new species of deep sea corals on the outer continental shelf and upper slope of the South Atlantic Bight. The species of coral found in these deep sea reefs are growing very slowly and provide habitat for many commercially valuable species of fish and other living resources. It is not yet completely clear how these habitats connect with the shallower reefs and habitats and if they could be playing a role of refugia for shallower species. Unfortunately, signs of fishing destruction on these unique and fragile habitats are obvious (e.g., abandoned nets, completely decimated habitats by trawling). OER funded research on mesophotic and deep-sea Lophelia coral reefs off the southeastern US was instrumental in the designation of the deep-water Coral Habitat Area of Particular Concern (CHAPC) that is now protecting these fragile reefs. Other examples of OER's contribution to discoveries leading to the designation of protected areas include the characterization and boundary determination of new designated Marine National Monuments and Marine Sanctuaries in the Pacific Ocean. After designation of a protected area, it is imperative to monitor the resource, improve understanding of its functioning, and thus be in a position to better protect it. While most of the reef fish surveys are conducted in shallow areas (0-20 m), it is recognized that many commercially exploited fish stocks also utilize deeper habitats (50-400m). However, traditional methods (e.g., hook-and-line) for sampling these bottom fish species cannot be used in many areas of the Northwestern Hawaiian Islands Coral Reef Ecosystem Reserve [now a Monument] and other restricted fishing areas. Our ability to assess and monitor ocean living marine resources is important for ecosystem management as well as for determining the effectiveness of Marine Protected Areas (MPAs). The development and deployment of non-extractive sampling methods such as autonomous camera systems to collect information about the spatial distribution and relative abundance of bottom fish species is one of the preferred methods. In addition, OER and the Hawaii Undersea Research Lab (HURL) were two of the first groups to conduct scientific research in the Northwestern Hawaiian Islands Coral Reef Ecosystem Reserve after it was established in 2000. Submersible dives (down to 2000 m) or ROV dives into the depths surrounding the remote islands, banks, and atolls have led to dozens of discoveries of new and yet to be identified species.

Faulting and instability of shelf sediments: eastern Gulf of Alaska

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carlson, P.R.; Molnia, B.F.

1976-04-01

Faults and submarine slides or slumps are potential environmental hazards on the outer continental shelf of the northern Gulf of Alaska. Submarine slides or slumps have been found in two places in the OCS region: (1) seaward of the Malaspina Glacier and Icy Bay, an area of 1770 square kilometers, that has a slope of less than one-half degree, and (2) across the entire span of the Copper River prodelta, an area of 1730 square kilometers, that has a slope of about one-half degree. Seismic profiles across these areas show disrupted reflectors and irregular topography commonly associated with submarine slidesmore » or slumps. Other potential slide or slum areas have been delineated in areas of thick sediment accumulation and relatively steep slopes. These areas include Kayak Trough, parts of Hinchinbrook Entrance and Sea Valley, parts of the outer shelf and upper slope between Kayak Island and Yakutat Bay and Bering Trough.« less

Preservation of high primary porosity in Paleozoic crinoidal and bioclastic grainstones: Mississippian and Permian subsurface examples from western Canada and Texas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Eby, D.E.; Kirkby, K.C.

1991-03-01

Limestone reservoirs with anomalously high porosity and permeability exist in several Paleozoic basinal settings in western North America. They are commonly either crinoidal or bioclastic grainstones that escaped the varied diagenetic environments that most carbonate shelves and slopes experience during sea-level fluctuations. Thus, these diagenetically 'conservative' settings can preserve most of the primary depositional porosity in calcarenites because of sedimentation and burial within normal marine basinal waters. These excellent reservoirs are often encased in deep marine, highly organic shales which may serve as both source rock and seal. Several subsurface examples of remarkable primary porosity occur within Mississippian Waulsortian buildupsmore » of western Canada and north-center Texas. Buildups within the Pekisko Formation of Alberta, for instance, contain abundant flanking crinoidal/bryozoan grainstones with up to 25% primary porosity and 10 d permeability. Muddy core facies with productive flank and capping calcarenites are up to 300 ft (90 m) thick and 600-1,200 ft (182-364 m) in diameter. The Bowar 'reef complex' in the Chappel Formation of Stephens County, Texas (2.6 MMBO to date) is similar in many respects to the Canadian buildups. Diagenetic 'conservatism' has also promoted excellent reservoir quality within the outer slope to basinal lower Permian bioclastic grain-flow deposit ('Wolfcamp detrital') plays of the eastern Midland basin where significant diagenesis was arrested after basinal deposition. Interpretations of these examples based upon core and outcrop control provide analogs for future exploration and exploitation in highly porous basinal carbonate reservoirs.« less

An extensive reef system at the Amazon River mouth

PubMed Central

Moura, Rodrigo L.; Amado-Filho, Gilberto M.; Moraes, Fernando C.; Brasileiro, Poliana S.; Salomon, Paulo S.; Mahiques, Michel M.; Bastos, Alex C.; Almeida, Marcelo G.; Silva, Jomar M.; Araujo, Beatriz F.; Brito, Frederico P.; Rangel, Thiago P.; Oliveira, Braulio C. V.; Bahia, Ricardo G.; Paranhos, Rodolfo P.; Dias, Rodolfo J. S.; Siegle, Eduardo; Figueiredo, Alberto G.; Pereira, Renato C.; Leal, Camille V.; Hajdu, Eduardo; Asp, Nils E.; Gregoracci, Gustavo B.; Neumann-Leitão, Sigrid; Yager, Patricia L.; Francini-Filho, Ronaldo B.; Fróes, Adriana; Campeão, Mariana; Silva, Bruno S.; Moreira, Ana P. B.; Oliveira, Louisi; Soares, Ana C.; Araujo, Lais; Oliveira, Nara L.; Teixeira, João B.; Valle, Rogerio A. B.; Thompson, Cristiane C.; Rezende, Carlos E.; Thompson, Fabiano L.

2016-01-01

Large rivers create major gaps in reef distribution along tropical shelves. The Amazon River represents 20% of the global riverine discharge to the ocean, generating up to a 1.3 × 106–km2 plume, and extensive muddy bottoms in the equatorial margin of South America. As a result, a wide area of the tropical North Atlantic is heavily affected in terms of salinity, pH, light penetration, and sedimentation. Such unfavorable conditions were thought to imprint a major gap in Western Atlantic reefs. We present an extensive carbonate system off the Amazon mouth, underneath the river plume. Significant carbonate sedimentation occurred during lowstand sea level, and still occurs in the outer shelf, resulting in complex hard-bottom topography. A permanent near-bottom wedge of ocean water, together with the seasonal nature of the plume’s eastward retroflection, conditions the existence of this extensive (~9500 km2) hard-bottom mosaic. The Amazon reefs transition from accretive to erosional structures and encompass extensive rhodolith beds. Carbonate structures function as a connectivity corridor for wide depth–ranging reef-associated species, being heavily colonized by large sponges and other structure-forming filter feeders that dwell under low light and high levels of particulates. The oxycline between the plume and subplume is associated with chemoautotrophic and anaerobic microbial metabolisms. The system described here provides several insights about the responses of tropical reefs to suboptimal and marginal reef-building conditions, which are accelerating worldwide due to global changes. PMID:27152336

An extensive reef system at the Amazon River mouth.

PubMed

Moura, Rodrigo L; Amado-Filho, Gilberto M; Moraes, Fernando C; Brasileiro, Poliana S; Salomon, Paulo S; Mahiques, Michel M; Bastos, Alex C; Almeida, Marcelo G; Silva, Jomar M; Araujo, Beatriz F; Brito, Frederico P; Rangel, Thiago P; Oliveira, Braulio C V; Bahia, Ricardo G; Paranhos, Rodolfo P; Dias, Rodolfo J S; Siegle, Eduardo; Figueiredo, Alberto G; Pereira, Renato C; Leal, Camille V; Hajdu, Eduardo; Asp, Nils E; Gregoracci, Gustavo B; Neumann-Leitão, Sigrid; Yager, Patricia L; Francini-Filho, Ronaldo B; Fróes, Adriana; Campeão, Mariana; Silva, Bruno S; Moreira, Ana P B; Oliveira, Louisi; Soares, Ana C; Araujo, Lais; Oliveira, Nara L; Teixeira, João B; Valle, Rogerio A B; Thompson, Cristiane C; Rezende, Carlos E; Thompson, Fabiano L

2016-04-01

Large rivers create major gaps in reef distribution along tropical shelves. The Amazon River represents 20% of the global riverine discharge to the ocean, generating up to a 1.3 × 10(6)-km(2) plume, and extensive muddy bottoms in the equatorial margin of South America. As a result, a wide area of the tropical North Atlantic is heavily affected in terms of salinity, pH, light penetration, and sedimentation. Such unfavorable conditions were thought to imprint a major gap in Western Atlantic reefs. We present an extensive carbonate system off the Amazon mouth, underneath the river plume. Significant carbonate sedimentation occurred during lowstand sea level, and still occurs in the outer shelf, resulting in complex hard-bottom topography. A permanent near-bottom wedge of ocean water, together with the seasonal nature of the plume's eastward retroflection, conditions the existence of this extensive (~9500 km(2)) hard-bottom mosaic. The Amazon reefs transition from accretive to erosional structures and encompass extensive rhodolith beds. Carbonate structures function as a connectivity corridor for wide depth-ranging reef-associated species, being heavily colonized by large sponges and other structure-forming filter feeders that dwell under low light and high levels of particulates. The oxycline between the plume and subplume is associated with chemoautotrophic and anaerobic microbial metabolisms. The system described here provides several insights about the responses of tropical reefs to suboptimal and marginal reef-building conditions, which are accelerating worldwide due to global changes.

Evidence for protection of targeted reef fish on the largest marine reserve in the Caribbean

PubMed Central

Pina-Amargós, Fabián; González-Sansón, Gaspar; Martín-Blanco, Félix

2014-01-01

Marine reserves can restore fish abundance and diversity in areas impacted by overfishing, but the effectiveness of reserves in developing countries where resources for enforcement are limited, have seldom been evaluated. Here we assess whether the establishment in 1996 of the largest marine reserve in the Caribbean, Gardens of the Queen in Cuba, has had a positive effect on the abundance of commercially valuable reef fish species in relation to neighboring unprotected areas. We surveyed 25 sites, including two reef habitats (reef crest and reef slope), inside and outside the marine reserve, on five different months, and over a one-and-a-half year period. Densities of the ten most frequent, highly targeted, and relatively large fish species showed a significant variability across the archipelago for both reef habitats that depended on the month of survey. These ten species showed a tendency towards higher abundance inside the reserve in both reef habitats for most months during the study. Average fish densities pooled by protection level, however, showed that five out of these ten species were at least two-fold significantly higher inside than outside the reserve at one or both reef habitats. Supporting evidence from previously published studies in the area indicates that habitat complexity and major benthic communities were similar inside and outside the reserve, while fishing pressure appeared to be homogeneous across the archipelago before reserve establishment. Although poaching may occur within the reserve, especially at the boundaries, effective protection from fishing was the most plausible explanation for the patterns observed. PMID:24688853

Novel reef fabrics from the Devonian Canning Basin, Western Australia

NASA Astrophysics Data System (ADS)

Wood, Rachel

1998-11-01

Large cement-filled cavities (0.2 to 1.5 m wide) are well developed in slope-margin sediments of the spectacular Upper Devonian (Frasnian) reefs of the Canning Basin, Western Australia, where they account for up to 50% of the primary porosity. These are here interpreted as primary reef framework cavities that formed beneath a variety of domal, tabular or laminar stromatoporoid sponges. Of particular note are those created by unusual, very thin (2 to 8 mm), laminar stromatoporoids (mainly Stachyodes australe), that formed arching, hollow domes up to 0.3 m in height and 1.5 m in diameter over the sediment surface to enclose flat-based cavities. The free undersurface of these stromatoporoids often supported a hitherto unrecognised cryptic community, dominated by pendent growth of the putative calcified cyanobacterium Renalcis, with rare intergrown lithistid sponges and spiny atrypid brachiopods. The uneven growth surface of the cryptos imparts an irregular, stromatactis-like texture to the upper surface of the remaining cavity, which is filled by early marine, finely banded, fibrous cements (mainly radiaxial calcite) interbedded with often multiple generations of geopetal sediment containing peloids and ostracod debris. This ecology yields the tabular stromatoporoid- Renalcis fabric described ubiquitously from the Canning Basin reef complex. Such unusual reef fabrics are a consequence of the ecology of shallow marine mid-Palaeozoic reefs which were quite unlike that of modern coral reefs. The frequent preservation of relatively delicate, in situ communities was due to (1) rapid and pervasive early cementation, (2) growth under non-energetic conditions, and (3) the relative insignificance of bioeroders associated with reefs at this time.

Evidence for protection of targeted reef fish on the largest marine reserve in the Caribbean.

PubMed

Pina-Amargós, Fabián; González-Sansón, Gaspar; Martín-Blanco, Félix; Valdivia, Abel

2014-01-01

Marine reserves can restore fish abundance and diversity in areas impacted by overfishing, but the effectiveness of reserves in developing countries where resources for enforcement are limited, have seldom been evaluated. Here we assess whether the establishment in 1996 of the largest marine reserve in the Caribbean, Gardens of the Queen in Cuba, has had a positive effect on the abundance of commercially valuable reef fish species in relation to neighboring unprotected areas. We surveyed 25 sites, including two reef habitats (reef crest and reef slope), inside and outside the marine reserve, on five different months, and over a one-and-a-half year period. Densities of the ten most frequent, highly targeted, and relatively large fish species showed a significant variability across the archipelago for both reef habitats that depended on the month of survey. These ten species showed a tendency towards higher abundance inside the reserve in both reef habitats for most months during the study. Average fish densities pooled by protection level, however, showed that five out of these ten species were at least two-fold significantly higher inside than outside the reserve at one or both reef habitats. Supporting evidence from previously published studies in the area indicates that habitat complexity and major benthic communities were similar inside and outside the reserve, while fishing pressure appeared to be homogeneous across the archipelago before reserve establishment. Although poaching may occur within the reserve, especially at the boundaries, effective protection from fishing was the most plausible explanation for the patterns observed.

Observations and estimates of wave-driven water level extremes at the Marshall Islands

NASA Astrophysics Data System (ADS)

Merrifield, M. A.; Becker, J. M.; Ford, M.; Yao, Y.

2014-10-01

Wave-driven extreme water levels are examined for coastlines protected by fringing reefs using field observations obtained in the Republic of the Marshall Islands. The 2% exceedence water level near the shoreline due to waves is estimated empirically for the study sites from breaking wave height at the outer reef and by combining separate contributions from setup, sea and swell, and infragravity waves, which are estimated based on breaking wave height and water level over the reef flat. Although each component exhibits a tidal dependence, they sum to yield a 2% exceedence level that does not. A hindcast based on the breaking wave height parameterization is used to assess factors leading to flooding at Roi-Namur caused by an energetic swell event during December 2008. Extreme water levels similar to December 2008 are projected to increase significantly with rising sea level as more wave and tide events combine to exceed inundation threshold levels.

Life and death of a sewage treatment plant recorded in a coral skeleton δ15N record.

PubMed

Duprey, Nicolas N; Wang, Xingchen T; Thompson, Philip D; Pleadwell, Jeffrey E; Raymundo, Laurie J; Kim, Kiho; Sigman, Daniel M; Baker, David M

2017-07-15

We investigated the potential of coral skeleton δ 15 N (CS-δ 15 N) records for tracking anthropogenic-N sources in coral reef ecosystems. We produced a 56yr-long CS-δ 15 N record (1958-2014) from a reef flat in Guam that has been exposed to varying 1) levels of sewage treatment 2) population density, and 3) land use. Increasing population density (from <30 to 300ind·km -2 ) and land use changes in the watershed resulted in a ~1‰ enrichment of the CS-δ 15 N record until a sewage treatment plant (STP) started operation in 1975. Then, CS-δ 15 N stabilized, despite continued population density and land use changes. Based on population and other considerations, a continued increase in the sewage footprint might have been expected over this time. The stability of CS-δ 15 N, either contradicts this expectation, or indicates that the impacts on the outer reef at the coring site were buffered by the mixing of reef water with the open ocean. Copyright © 2017 Elsevier Ltd. All rights reserved.

Resilience of a High Latitude Red Sea Frining Corals Exposed to Extreme Temperatures

NASA Astrophysics Data System (ADS)

Moustafa, M.; Moustafa, M. S.; Moustafa, S.; Moustafa, Z. D.

2013-05-01

Since 2004, multi-year study set out to establish linkages between fringing coral reefs in the northern Gulf of Suez, Red Sea, and local weather. Insight into local meteorological processes may provide a better understanding of the direct influence weather has on a fringing coral reef. To establish trends, seawater temperature and meteorological record were collected at a small fringing coral reef (Zaki's Reef), located near Ein Sokhna, Egypt (29.5oN & 32.4oE). Monitoring air and water temperature provides evidence of seasonality and interannual variability and may reveal correlations between reef health and climate conditions in this region. Prior to this study, there were no known long-term studies investigating coral reefs in this region. Approximately 35 coral taxa are known to survive the extreme temperature and salinity regime found here, yet only six corals compose 94% of coral cover on Zaki's Reef. Dominant corals include: Acropora humilis, A. microclados, A. hemprichii, Litophyton arboretum, Stylophora pistillata, Porites columna, and P. plantulata. Seawater temperatures were collected at 30 minutes intervals at 5 locations. Seawater temperature data indicate that corals experience 4-6.5oC daily temperature variations and seasonal variations that exceed 29oC. Air temperatures were collected just landward of the reef were compared to Hurghada and Ismailia 400 and 200 km south and north of the study site, respectively. Time series analysis results indicate that air temperature dominant frequencies are half-daily, daily, and yearly cycles, while water temperatures show yearly cycles. A comparison of air temperature with neighboring locations indicates that air temperatures at Ein Sokhna ranged between near 0o C to an excess of 55o C, yet, daily means for Ein Sokhna and Hurghada were very similar (24.2o C and. 25.2o C, respectively). Maximum daily air temperatures at the study site exceeded maximum air temperature at Hurghada (400 km south) by almost 7o C, while minimum daily means at Ein Sokhna were almost equal to those at Ismailia (200 km north). These trends were opposite to what was expected considering each stations geographical locations. The unexpected temperature trends, the daily/half daily dominant frequencies, and the short distance between the mountain range and Zaki's Reef vs. Hurghada (0.5 vs. 35 km), prompted us to hypothesize that a Foehn wind may be responsible for the high air temperatures observed at Ein Sokhna. We applied NOAA's HYSPLIT model to explore local circulation patterns, which suggest that the high mountain range blocks the year-round trade wind and forces it to climb up the western slope, where it loses moisture and reduces its temperature. As this cool, denser air reaches the mountain top, the air parcel starts rolling down the eastern slopes, which causes air temperature to rise and result in an increase in local air temperatures. These warmer than normal air temperatures measured here may aid in securing these northernmost reefs survival. Further scrutiny of the mechanisms by which area reefs are able to thrive extreme environmental conditions continues to be investigated.

Deep-sea coral and hardbottom habitats on the west Florida slope, eastern Gulf of Mexico

NASA Astrophysics Data System (ADS)

Ross, Steve W.; Rhode, Mike; Brooke, Sandra

2017-02-01

Until recently, benthic habitats dominated by deep-sea corals (DSC) appeared to be less extensive on the slope of the Gulf of Mexico (GOM) than in the northeast Atlantic Ocean or off the southeastern US. There are relatively few bioherms (i.e., coral-built mounds) in the northern GOM, and most DSCs are attached to existing hard substrata (e.g., authigenically formed carbonate). The primary structure-forming, DSC in the GOM is Lophelia pertusa, but structure is also provided by other living and dead scleractinians, antipatharians (black corals), octocorals (gorgonians, soft corals), hydrocorals and sponges, as well as abundant rocky substrata. The best development of DSCs in the GOM was previously documented within Viosca Knoll oil and gas lease blocks 826 and 862/906 (north-central GOM) and on the Campeche Bank (southern GOM in Mexican waters). This paper documents extensive deep reef ecosystems composed of DSC and rocky hard-bottom recently surveyed on the West Florida Slope (WFS, eastern GOM) during six research cruises (2008-2012). Using multibeam sonar, CTD casts, and video from underwater vehicles, we describe the physical and oceanographic characteristics of these deep reefs and provide size or area estimates of deep coral and hardground habitats. The multibeam sonar analyses revealed hundreds of mounds and ridges, some of which were subsequently surveyed using underwater vehicles. Mounds and ridges in <525 m depths were usually capped with living coral colonies, dominated by L. pertusa. An extensive rocky scarp, running roughly north-south for at least 229 km, supported lower abundances of scleractinian corals than the mounds and ridges, despite an abundance of settlement substrata. Areal comparisons suggested that the WFS may exceed other parts of the GOM slope in extent of living deep coral coverage and other deep-reef habitat (dead coral and rock). The complex WFS region warrants additional studies to better understand the influences of oceanography and geology on the occurrence of DSC and associated organisms. Protection measures are being considered to ensure the long-term integrity of this diverse ecosystem.

Reprint of - Deep-sea coral and hardbottom habitats on the west Florida slope, eastern Gulf of Mexico

NASA Astrophysics Data System (ADS)

Ross, Steve W.; Rhode, Mike; Brooke, Sandra

2017-09-01

Until recently, benthic habitats dominated by deep-sea corals (DSC) appeared to be less extensive on the slope of the Gulf of Mexico (GOM) than in the northeast Atlantic Ocean or off the southeastern US. There are relatively few bioherms (i.e., coral-built mounds) in the northern GOM, and most DSCs are attached to existing hard substrata (e.g., authigenically formed carbonate). The primary structure-forming, DSC in the GOM is Lophelia pertusa, but structure is also provided by other living and dead scleractinians, antipatharians (black corals), octocorals (gorgonians, soft corals), hydrocorals and sponges, as well as abundant rocky substrata. The best development of DSCs in the GOM was previously documented within Viosca Knoll oil and gas lease blocks 826 and 862/906 (north-central GOM) and on the Campeche Bank (southern GOM in Mexican waters). This paper documents extensive deep reef ecosystems composed of DSC and rocky hard-bottom recently surveyed on the West Florida Slope (WFS, eastern GOM) during six research cruises (2008-2012). Using multibeam sonar, CTD casts, and video from underwater vehicles, we describe the physical and oceanographic characteristics of these deep reefs and provide size or area estimates of deep coral and hardground habitats. The multibeam sonar analyses revealed hundreds of mounds and ridges, some of which were subsequently surveyed using underwater vehicles. Mounds and ridges in <525 m depths were usually capped with living coral colonies, dominated by L. pertusa. An extensive rocky scarp, running roughly north-south for at least 229 km, supported lower abundances of scleractinian corals than the mounds and ridges, despite an abundance of settlement substrata. Areal comparisons suggested that the WFS may exceed other parts of the GOM slope in extent of living deep coral coverage and other deep-reef habitat (dead coral and rock). The complex WFS region warrants additional studies to better understand the influences of oceanography and geology on the occurrence of DSC and associated organisms. Protection measures are being considered to ensure the long-term integrity of this diverse ecosystem.

Growth patterns of the Cambrian microbialite: Phototropism and speciation of Epiphyton

NASA Astrophysics Data System (ADS)

Woo, J.; Chough, S. K.

2010-07-01

Microbes started constructing shallow marine stromatolitic bioherms in the Archean, but they transferred their role as a major buildup maker to metazoans in Phanerozoic. Microbial buildups often recovered their predominance in the carbonate platform when reefal metazoan communities collapsed. Epiphyton, an extinct taxon of calcified microbe that possessed branching filamentous trichomes, was an important reef builder in the shallow marine carbonate platform during Middle Cambrian, aftermath of an extinction of archaeocyath sponges which were major reef-building sessile organisms in the Early Cambrian. Here we present direct evidence of phototropism of Epiphyton, found from fossilized behavior in micro- and macro-structures of meter-scale microbial bioherms of the Zhangxia Formation (Middle Cambrian), North China Platform, Shandong Province, China. The bioherms consist of stacked growth layers with the inner and outer divisions divided by distinct boundary. The inner division of growth layers of the Epiphyton bioherm is dominated by dense uniform bush-shaped Epiphyton thalli, whereas the curved outer division has layered texture normal to the surface, comprised of elongated and chambered thalli. It suggests that photosynthetic Epiphyton reacted actively to the spatial changes in intensity of sunlight, controlled by angle of illumination on the curved growth surface of the bioherm. The inner and the outer divisions comprise different morpho-types of Epiphyton. The spatial distributions of different morpho-types in variously illuminated divisions of Epiphyton might have caused further speciation of Epiphyton.

Daily variation in net primary production and net calcification in coral reef communities exposed to elevated pCO2

NASA Astrophysics Data System (ADS)

Comeau, Steeve; Edmunds, Peter J.; Lantz, Coulson A.; Carpenter, Robert C.

2017-07-01

The threat represented by ocean acidification (OA) for coral reefs has received considerable attention because of the sensitivity of calcifiers to changing seawater carbonate chemistry. However, most studies have focused on the organismic response of calcification to OA, and only a few have addressed community-level effects, or investigated parameters other than calcification, such as photosynthesis. Light (photosynthetically active radiation, PAR) is a driver of biological processes on coral reefs, and the possibility that these processes might be perturbed by OA has important implications for community function. Here we investigate how CO2 enrichment affects the relationships between PAR and community net O2 production (Pnet), and between PAR and community net calcification (Gnet), using experiments on three coral communities constructed to match (i) the back reef of Mo'orea, French Polynesia, (ii) the fore reef of Mo'orea, and (iii) the back reef of O'ahu, Hawaii. The results were used to test the hypothesis that OA affects the relationship between Pnet and Gnet. For the three communities tested, pCO2 did not affect the Pnet-PAR relationship, but it affected the intercept of the hyperbolic tangent curve fitting the Gnet-PAR relationship for both reef communities in Mo'orea (but not in O'ahu). For the three communities, the slopes of the linear relationships between Pnet and Gnet were not affected by OA, although the intercepts were depressed by the inhibitory effect of high pCO2 on Gnet. Our result indicates that OA can modify the balance between net calcification and net photosynthesis of reef communities by depressing community calcification, but without affecting community photosynthesis.

Experimental and Numerical Studies on Wave Breaking Characteristics over a Fringing Reef under Monochromatic Wave Conditions

PubMed Central

2014-01-01

Fringing reefs play an important role in protecting the coastal area by inducing wave breaking and wave energy dissipation. However, modeling of wave transformation and energy dissipation on this topography is still difficult due to the unique structure. In the present study, two-dimensional laboratory experiments were conducted to investigate the cross-shore variations of wave transformation, setup, and breaking phenomena over an idealized fringing reef with the 1/40 reef slope and to verify the Boussinesq model under monochromatic wave conditions. One-layer and two-layer model configurations of the Boussinesq model were used to figure out the model capability. Both models predicted well (r 2 > 0.8) the cross-shore variation of the wave heights, crests, troughs, and setups when the nonlinearity is not too high (A 0/h 0 < 0.07 in this study). However, as the wave nonlinearity and steepness increase, the one-layer model showed problems in prediction and stability due to the error on the vertical profile of fluid velocity. The results in this study revealed that one-layer model is not suitable in the highly nonlinear wave condition over a fringing reef bathymetry. This data set can contribute to the numerical model verification. PMID:25276853

Experimental and numerical studies on wave breaking characteristics over a fringing reef under monochromatic wave conditions.

PubMed

Lee, Jong-In; Shin, Sungwon; Kim, Young-Taek

2014-01-01

Fringing reefs play an important role in protecting the coastal area by inducing wave breaking and wave energy dissipation. However, modeling of wave transformation and energy dissipation on this topography is still difficult due to the unique structure. In the present study, two-dimensional laboratory experiments were conducted to investigate the cross-shore variations of wave transformation, setup, and breaking phenomena over an idealized fringing reef with the 1/40 reef slope and to verify the Boussinesq model under monochromatic wave conditions. One-layer and two-layer model configurations of the Boussinesq model were used to figure out the model capability. Both models predicted well (r (2) > 0.8) the cross-shore variation of the wave heights, crests, troughs, and setups when the nonlinearity is not too high (A 0/h 0 < 0.07 in this study). However, as the wave nonlinearity and steepness increase, the one-layer model showed problems in prediction and stability due to the error on the vertical profile of fluid velocity. The results in this study revealed that one-layer model is not suitable in the highly nonlinear wave condition over a fringing reef bathymetry. This data set can contribute to the numerical model verification.

Introduction of geospatial perspective to the ecology of fish-habitat relationships in Indonesian coral reefs: A remote sensing approach

NASA Astrophysics Data System (ADS)

Sawayama, Shuhei; Nurdin, Nurjannah; Akbar AS, Muhammad; Sakamoto, Shingo X.; Komatsu, Teruhisa

2015-06-01

Coral reef ecosystems worldwide are now being harmed by various stresses accompanying the degradation of fish habitats and thus knowledge of fish-habitat relationships is urgently required. Because conventional research methods were not practical for this purpose due to the lack of a geospatial perspective, we attempted to develop a research method integrating visual fish observation with a seabed habitat map and to expand knowledge to a two-dimensional scale. WorldView-2 satellite imagery of Spermonde Archipelago, Indonesia obtained in September 2012 was analyzed and classified into four typical substrates: live coral, dead coral, seagrass and sand. Overall classification accuracy of this map was 81.3% and considered precise enough for subsequent analyses. Three sub-areas (CC: continuous coral reef, BC: boundary of coral reef and FC: few live coral zone) around reef slopes were extracted from the map. Visual transect surveys for several fish species were conducted within each sub-area in June 2013. As a result, Mean density (Ind. / 300 m2) of Chaetodon octofasciatus, known as an obligate feeder of corals, was significantly higher at BC than at the others (p < 0.05), implying that this species' density is strongly influenced by spatial configuration of its habitat, like the "edge effect." This indicates that future conservation procedures for coral reef fishes should consider not only coral cover but also its spatial configuration. The present study also indicates that the introduction of a geospatial perspective derived from remote sensing has great potential to progress conventional ecological studies on coral reef fishes.

A Bayesian-Based System to Assess Wave-Driven Flooding Hazards on Coral Reef-Lined Coasts

NASA Astrophysics Data System (ADS)

Pearson, S. G.; Storlazzi, C. D.; van Dongeren, A. R.; Tissier, M. F. S.; Reniers, A. J. H. M.

2017-12-01

Many low-elevation, coral reef-lined, tropical coasts are vulnerable to the effects of climate change, sea level rise, and wave-induced flooding. The considerable morphological diversity of these coasts and the variability of the hydrodynamic forcing that they are exposed to make predicting wave-induced flooding a challenge. A process-based wave-resolving hydrodynamic model (XBeach Non-Hydrostatic, "XBNH") was used to create a large synthetic database for use in a "Bayesian Estimator for Wave Attack in Reef Environments" (BEWARE), relating incident hydrodynamics and coral reef geomorphology to coastal flooding hazards on reef-lined coasts. Building on previous work, BEWARE improves system understanding of reef hydrodynamics by examining the intrinsic reef and extrinsic forcing factors controlling runup and flooding on reef-lined coasts. The Bayesian estimator has high predictive skill for the XBNH model outputs that are flooding indicators, and was validated for a number of available field cases. It was found that, in order to accurately predict flooding hazards, water depth over the reef flat, incident wave conditions, and reef flat width are the most essential factors, whereas other factors such as beach slope and bed friction due to the presence or absence of corals are less important. BEWARE is a potentially powerful tool for use in early warning systems or risk assessment studies, and can be used to make projections about how wave-induced flooding on coral reef-lined coasts may change due to climate change.