Structural and physicochemical characterization of thermoplastic corn starch films containing microalgae.

PubMed

Fabra, María José; Martínez-Sanz, Marta; Gómez-Mascaraque, L G; Gavara, Rafael; López-Rubio, Amparo

2018-04-15

This work provides an in-depth analysis on how the addition of different microalgae species (Nannochloropsis, Spirulina and Scenedesmus) affected the structural and physicochemical properties of thermoplastic corn starch biocomposites. Structural characterization was conducted by combined SAXS/WAXS experiments and it was correlated with mechanical and barrier properties of the biocomposites. A water vapour permeability drop of ca. 54% was observed upon addition of the different microalgae species. The oxygen permeability and the mechanical properties of biocomposites containing Spirulina or Scenedesmus were not improved since the presence of microalgae hindered the re-arrangement and packing of the lamellar structure of starch polymeric chains, according to the SAXS results. Nannochloropsis caused a great reduction of the matrix rigidity and, the oxygen permeability was also improved. Therefore, all of these features make the Nannochloropsis biocomposites an alternative to generate biodegradable food packaging materials with the additional advantage that they can be easily scaled-up. Copyright © 2018 Elsevier Ltd. All rights reserved.

Sialic acids regulate microvessel permeability, revealed by novel in vivo studies of endothelial glycocalyx structure and function

PubMed Central

Betteridge, Kai B.; Arkill, Kenton P.; Neal, Christopher R.; Harper, Steven J.; Foster, Rebecca R.; Satchell, Simon C.; Bates, David O.

2017-01-01

Key points We have developed novel techniques for paired, direct, real‐time in vivo quantification of endothelial glycocalyx structure and associated microvessel permeability.Commonly used imaging and analysis techniques yield measurements of endothelial glycocalyx depth that vary by over an order of magnitude within the same vessel.The anatomical distance between maximal glycocalyx label and maximal endothelial cell plasma membrane label provides the most sensitive and reliable measure of endothelial glycocalyx depth.Sialic acid residues of the endothelial glycocalyx regulate glycocalyx structure and microvessel permeability to both water and albumin. Abstract The endothelial glycocalyx forms a continuous coat over the luminal surface of all vessels, and regulates multiple vascular functions. The contribution of individual components of the endothelial glycocalyx to one critical vascular function, microvascular permeability, remains unclear. We developed novel, real‐time, paired methodologies to study the contribution of sialic acids within the endothelial glycocalyx to the structural and functional permeability properties of the same microvessel in vivo. Single perfused rat mesenteric microvessels were perfused with fluorescent endothelial cell membrane and glycocalyx labels, and imaged with confocal microscopy. A broad range of glycocalyx depth measurements (0.17–3.02 μm) were obtained with different labels, imaging techniques and analysis methods. The distance between peak cell membrane and peak glycocalyx label provided the most reliable measure of endothelial glycocalyx anatomy, correlating with paired, numerically smaller values of endothelial glycocalyx depth (0.078 ± 0.016 μm) from electron micrographs of the same portion of the same vessel. Disruption of sialic acid residues within the endothelial glycocalyx using neuraminidase perfusion decreased endothelial glycocalyx depth and increased apparent solute permeability to albumin in the same vessels in a time‐dependent manner, with changes in all three true vessel wall permeability coefficients (hydraulic conductivity, reflection coefficient and diffusive solute permeability). These novel technologies expand the range of techniques that permit direct studies of the structure of the endothelial glycocalyx and dependent microvascular functions in vivo, and demonstrate that sialic acid residues within the endothelial glycocalyx are critical regulators of microvascular permeability to both water and albumin. PMID:28524373

Permeability of acetic acid across gel and liquid-crystalline lipid bilayers conforms to free-surface-area theory.

PubMed Central

Xiang, T X; Anderson, B D

1997-01-01

Solubility-diffusion theory, which treats the lipid bilayer membrane as a bulk lipid solvent into which permeants must partition and diffuse across, fails to account for the effects of lipid bilayer chain order on the permeability coefficient of any given permeant. This study addresses the scaling factor that must be applied to predictions from solubility-diffusion theory to correct for chain ordering. The effects of bilayer chemical composition, temperature, and phase structure on the permeability coefficient (Pm) of acetic acid were investigated in large unilamellar vesicles by a combined method of NMR line broadening and dynamic light scattering. Permeability values were obtained in distearoylphosphatidylcholine, dipalmitoylphosphatidylcholine, dimyristoylphosphatidylcholine, and dilauroylphosphatidylcholine bilayers, and their mixtures with cholesterol, at various temperatures both above and below the gel-->liquid-crystalline phase transition temperatures (Tm). A new scaling factor, the permeability decrement f, is introduced to account for the decrease in permeability coefficient from that predicted by solubility-diffusion theory owing to chain ordering in lipid bilayers. Values of f were obtained by division of the observed Pm by the permeability coefficient predicted from a bulk solubility-diffusion model. In liquid-crystalline phases, a strong correlation (r = 0.94) between f and the normalized surface density sigma was obtained: in f = 5.3 - 10.6 sigma. Activation energies (Ea) for the permeability of acetic acid decreased with decreasing phospholipid chain length and correlated with the sensitivity of chain ordering to temperature, [symbol: see text] sigma/[symbol: see text](1/T), as chain length was varied. Pm values decreased abruptly at temperatures below the main phase transition temperatures in pure dipalmitoylphosphatidylcholine and dimyristoylphosphatidylcholine bilayers (30-60-fold) and below the pretransition in dipalmitoylphosphatidylcholine bilayers (8-fold), and the linear relationship between in f and sigma established for liquid-crystalline bilayers was no longer followed. However, in both gel and liquid-crystalline phases in f was found to exhibit an inverse correlation with free surface area (in f = -0.31 - 29.1/af, where af is the average free area (in square angstroms) per lipid molecule). Thus, the lipid bilayer permeability of acetic acid can be predicted from the relevant chain-packing properties in the bilayer (free surface area), regardless of whether chain ordering is varied by changes in temperature, lipid chain length, cholesterol concentration, or bilayer phase structure, provided that temperature effects on permeant dehydration and diffusion and the chain-length effects on bilayer barrier thickness are properly taken into account. PMID:8994607

Pressure sensitivity of low permeability sandstones

USGS Publications Warehouse

Kilmer, N.H.; Morrow, N.R.; Pitman, Janet K.

1987-01-01

Detailed core analysis has been carried out on 32 tight sandstones with permeabilities ranging over four orders of magnitude (0.0002 to 4.8 mD at 5000 psi confining pressure). Relationships between gas permeability and net confining pressure were measured for cycles of loading and unloading. For some samples, permeabilities were measured both along and across bedding planes. Large variations in stress sensitivity of permeability were observed from one sample to another. The ratio of permeability at a nominal confining pressure of 500 psi to that at 5000 psi was used to define a stress sensitivity ratio. For a given sample, confining pressure vs permeability followed a linear log-log relationship, the slope of which provided an index of pressure sensitivity. This index, as obtained for first unloading data, was used in testing relationships between stress sensitivity and other measured rock properties. Pressure sensitivity tended to increase with increase in carbonate content and depth, and with decrease in porosity, permeability and sodium feldspar. However, scatter in these relationships increased as permeability decreased. Tests for correlations between pressure sensitivity and various linear combinations of variables are reported. Details of pore structure related to diagenetic changes appears to be of much greater significance to pressure sensitivity than mineral composition. ?? 1987.

Physical heterogeneity control on effective mineral dissolution rates

NASA Astrophysics Data System (ADS)

Jung, Heewon; Navarre-Sitchler, Alexis

2018-04-01

Hydrologic heterogeneity may be an important factor contributing to the discrepancy in laboratory and field measured dissolution rates, but the governing factors influencing mineral dissolution rates among various representations of physical heterogeneity remain poorly understood. Here, we present multiple reactive transport simulations of anorthite dissolution in 2D latticed random permeability fields and link the information from local grid scale (1 cm or 4 m) dissolution rates to domain-scale (1m or 400 m) effective dissolution rates measured by the flux-weighted average of an ensemble of flow paths. We compare results of homogeneous models to heterogeneous models with different structure and layered permeability distributions within the model domain. Chemistry is simplified to a single dissolving primary mineral (anorthite) distributed homogeneously throughout the domain and a single secondary mineral (kaolinite) that is allowed to dissolve or precipitate. Results show that increasing size in correlation structure (i.e. long integral scales) and high variance in permeability distribution are two important factors inducing a reduction in effective mineral dissolution rates compared to homogeneous permeability domains. Larger correlation structures produce larger zones of low permeability where diffusion is an important transport mechanism. Due to the increased residence time under slow diffusive transport, the saturation state of a solute with respect to a reacting mineral approaches equilibrium and reduces the reaction rate. High variance in permeability distribution favorably develops large low permeability zones that intensifies the reduction in mixing and effective dissolution rate. However, the degree of reduction in effective dissolution rate observed in 1 m × 1 m domains is too small (<1% reduction from the corresponding homogeneous case) to explain several orders of magnitude reduction observed in many field studies. When multimodality in permeability distribution is approximated by high permeability variance in 400 m × 400 m domains, the reduction in effective dissolution rate increases due to the effect of long diffusion length scales through zones with very slow reaction rates. The observed scale dependence becomes complicated when pH dependent kinetics are compared to the results from pH independent rate constants. In small domains where the entire domain is reactive, faster anorthite dissolution rates and slower kaolinite precipitation rates relative to pH independent rates at far-from-equilibrium conditions reduce the effective dissolution rate by increasing the saturation state. However, in large domains where less- or non-reactive zones develop, higher kaolinite precipitation rates in less reactive zones increase the effective anorthite dissolution rates relative to the rates observed in pH independent cases.

Permeability-porosity relationships of subduction zone sediments

USGS Publications Warehouse

Gamage, Kusali; Screaton, Elizabeth; Bekins, B.; Aiello, I.

2011-01-01

Permeability-porosity relationships for sediments from the northern Barbados, Costa Rica, Nankai, and Peru subduction zones were examined based on sediment type, grain size distribution, and general mechanical and chemical compaction history. Greater correlation was observed between permeability and porosity in siliciclastic sediments, diatom oozes, and nannofossil chalks than in nannofossil oozes. For siliciclastic sediments, grouping of sediments by percentage of clay-sized material yields relationships that are generally consistent with results from other marine settings and suggests decreasing permeability as percentage of clay-sized material increases. Correction of measured porosities for smectite content improved the correlation of permeability-porosity relationships for siliciclastic sediments and diatom oozes. The relationship between permeability and porosity for diatom oozes is very similar to the relationship in siliciclastic sediments, and permeabilities of both sediment types are related to the amount of clay-size particles. In contrast, nannofossil oozes have higher permeability values by 1.5 orders of magnitude than siliciclastic sediments of the same porosity and show poor correlation between permeability and porosity. More indurated calcareous sediments, nannofossil chalks, overlap siliciclastic permeabilities at the lower end of their measured permeability range, suggesting similar consolidation patterns at depth. Thus, the lack of correlation between permeability and porosity for nannofossil oozes is likely related to variations in mechanical and chemical compaction at shallow depths. This study provides the foundation for a much-needed global database with fundamental properties that relate to permeability in marine settings. Further progress in delineating controls on permeability requires additional carefully documented permeability measurements on well-characterized samples. ?? 2010 Elsevier B.V.

Defects level evaluation of LiTiZn ferrite ceramics using temperature dependence of initial permeability

NASA Astrophysics Data System (ADS)

Malyshev, A. V.; Petrova, A. B.; Sokolovskiy, A. N.; Surzhikov, A. P.

2018-06-01

The method for evaluating the integral defects level and chemical homogeneity of ferrite ceramics based on temperature dependence analysis of initial permeability is suggested. A phenomenological expression for the description of such dependence was suggested and an interpretation of its main parameters was given. It was shown, that the main criterion of the integral defects level of ferrite ceramics is relation of two parameters correlating with elastic stress value in a material. An indicator of structural perfection can be a maximum value of initial permeability close to Curie point as well. The temperature dependences of initial permeability have analyzed for samples sintered in laboratory conditions and for the ferrite industrial product. The proposed method allows controlling integral defects level of the soft ferrite products and has high sensitivity compare to typical X-ray methods.

Relationship between anisotropies of permeability, electrical conductivity, and dielectric permittivity, with application to the Ellenburger dolomite reservoir analog

NASA Astrophysics Data System (ADS)

Kutemi, Titilope F.

The steady-state flow technique was employed to measure the flow rate of clean dry air through thirty core plugs (approximately 1" diameter) of the Ellenburger dolomite, drilled normal and parallel to the dominant fractures. Porosity was estimated by the method of imbibition. Electrical parameters (electrical conductivity and dielectric permittivity) were calculated from electrical resistance and capacitance measured as a function of frequency (100 Hz, 120 Hz, 1 KHz, and 10 KHz) and saturation (dry/ambient and brine saturated conditions). Another set of permeability data obtained by the method of pressure decay on similar samples was used for correlation. Anisotropies of permeability and electromagnetic parameters were established. Empirical relations between porosity (phi), permeability (k), electrical conductivity (sigma), and dielectric permittivity (epsilon) were defined via cross-plots and linear regressions. Prediction of k from sigma and epsilon was attempted; k from sigma was modeled from a combination of the Archie's relation and the Carman-Kozeny relation. Anisotropic EM responses are sensitive to saturation. Anisotropies of conductivity and permeability were observed to be controlled by the pore micro-structure. Although the rock is fractured, the fracture density appears insufficient to dominate the effects of primary structures in these samples of the Ellenburger dolomite. Model-based prediction of permeability from conductivity is generally unreliable, and is attributed to the underlying assumptions of the models, which are not consistent with the properties of the samples used for this study. Permeability was not predictable from dielectric permittivity.

Effects of water saturation on P-wave propagation in fractured coals: An experimental perspective

NASA Astrophysics Data System (ADS)

Liu, Jie; Liu, Dameng; Cai, Yidong; Gan, Quan; Yao, Yanbin

2017-09-01

Internal structure of coalbed methane (CBM) reservoirs can be evaluated through ultrasonic measurements. The compressional wave that propagates in a fractured coal reservoir may indicate the internal coal structure and fluid characteristics. The P-wave propagation was proposed to study the relations between petrophysical parameters (including water saturation, fractures, porosity and permeability) of coals and the P-wave velocity (Vp), using a KON-NM-4A ultrasonic velocity meter. In this study, the relations between Vps and water saturations were established: Type I is mainly controlled by capillary of developed seepage pores. The controlling factors on Type II and Type III are internal homogeneity of pores/fractures and developed micro-fractures, respectively. Micro-fractures density linearly correlates with the Vp due to the fracture volume and dispersion of P-wave; and micro-fractures of types C and D have a priority in Vp. For dry coals, no clear relation exists between porosity, permeability and the Vp. However, as for water-saturated coals, the correlation coefficients of porosity, permeability and Vp are slightly improved. The Vp of saturated coals could be predicted with the equation of Vp-saturated = 1.4952Vp-dry-26.742 m/s. The relation between petrophysical parameters of coals and Vp under various water saturations can be used to evaluate the internal structure in fractured coals. Therefore, these relations have significant implications for coalbed methane (CBM) exploration.

Quantitative structure-retention relationships of flavonoids unraveled by immobilized artificial membrane chromatography.

PubMed

Santoro, Adriana Leandra; Carrilho, Emanuel; Lanças, Fernando Mauro; Montanari, Carlos Alberto

2016-06-10

The pharmacokinetic properties of flavonoids with differing degrees of lipophilicity were investigated using immobilized artificial membranes (IAMs) as the stationary phase in high performance liquid chromatography (HPLC). For each flavonoid compound, we investigated whether the type of column used affected the correlation between the retention factors and the calculated octanol/water partition (log Poct). Three-dimensional (3D) molecular descriptors were calculated from the molecular structure of each compound using i) VolSurf software, ii) the GRID method (computational procedure for determining energetically favorable binding sites in molecules of known structure using a probe for calculating the 3D molecular interaction fields, between the probe and the molecule), and iii) the relationship between partition and molecular structure, analyzed in terms of physicochemical descriptors. The VolSurf built-in Caco-2 model was used to estimate compound permeability. The extent to which the datasets obtained from different columns differ both from each other and from both the calculated log Poct and the predicted permeability in Caco-2 cells was examined by principal component analysis (PCA). The immobilized membrane partition coefficients (kIAM) were analyzed using molecular descriptors in partial least square regression (PLS) and a quantitative structure-retention relationship was generated for the chromatographic retention in the cholesterol column. The cholesterol column provided the best correlation with the permeability predicted by the Caco-2 cell model and a good fit model with great prediction power was obtained for its retention data (R(2)=0.96 and Q(2)=0.85 with four latent variables). Copyright © 2015 Elsevier B.V. All rights reserved.

Machine learning framework for analysis of transport through complex networks in porous, granular media: A focus on permeability

NASA Astrophysics Data System (ADS)

van der Linden, Joost H.; Narsilio, Guillermo A.; Tordesillas, Antoinette

2016-08-01

We present a data-driven framework to study the relationship between fluid flow at the macroscale and the internal pore structure, across the micro- and mesoscales, in porous, granular media. Sphere packings with varying particle size distribution and confining pressure are generated using the discrete element method. For each sample, a finite element analysis of the fluid flow is performed to compute the permeability. We construct a pore network and a particle contact network to quantify the connectivity of the pores and particles across the mesoscopic spatial scales. Machine learning techniques for feature selection are employed to identify sets of microstructural properties and multiscale complex network features that optimally characterize permeability. We find a linear correlation (in log-log scale) between permeability and the average closeness centrality of the weighted pore network. With the pore network links weighted by the local conductance, the average closeness centrality represents a multiscale measure of efficiency of flow through the pore network in terms of the mean geodesic distance (or shortest path) between all pore bodies in the pore network. Specifically, this study objectively quantifies a hypothesized link between high permeability and efficient shortest paths that thread through relatively large pore bodies connected to each other by high conductance pore throats, embodying connectivity and pore structure.

The Importance of Parameter Variances, Correlations Lengths, and Cross-Correlations in Reactive Transport Models: Key Considerations for Assessing the Need for Microscale Information (Invited)

NASA Astrophysics Data System (ADS)

Reimus, P. W.

2010-12-01

A process-oriented modeling approach is implemented to examine the importance of parameter variances, correlation lengths, and especially cross-correlations in contaminant transport predictions over large scales. It is shown that the most important consideration is the correlation between flow rates and retardation processes (e.g., sorption, matrix diffusion) in the system. If flow rates are negatively correlated with retardation factors in systems containing multiple flow pathways, then characterizing these negative correlation(s) may have more impact on reactive transport modeling than microscale information. Such negative correlations are expected in porous-media systems where permeability is negatively correlated with clay content and rock alteration (which are usually associated with increased sorption). Likewise, negative correlations are expected in fractured rocks where permeability is positively correlated with fracture apertures, which in turn are negatively correlated with sorption and matrix diffusion. Parameter variances and correlation lengths are also shown to have important effects on reactive transport predictions, but they are less important than parameter cross-correlations. Microscale information pertaining to contaminant transport has become more readily available as characterization methods and spectroscopic instrumentation have achieved lower detection limits, greater resolution, and better precision. Obtaining detailed mechanistic insights into contaminant-rock-water interactions is becoming a routine practice in characterizing reactive transport processes in groundwater systems (almost necessary for high-profile publications). Unfortunately, a quantitative link between microscale information and flow and transport parameter distributions or cross-correlations has not yet been established. One reason for this is that quantitative microscale information is difficult to obtain in complex, heterogeneous systems, so simple systems that lack the complexity and heterogeneity of real aquifer materials are often studied. Another is that instrumentation used to obtain microscale information often probes only one variable or family of variables at a time, so linkages to other variables must be inferred by indirect means from other lines of evidence. Despite these limitations, microscale information can be useful in the development and validation of reactive transport models. For example, knowledge of mineral phases that have strong affinities for contaminants can help in the development of cross-correlations between flow and sorption parameters via characterization of permeability and mineral distributions in aquifers. Likewise, microscale information on pore structures in low-permeability zones and contaminant penetration distances into these zones from higher-permeability zones (e.g., fractures) can provide valuable constraints on the representation of diffusive mass transfer processes between flowing porosity and secondary porosity. The prioritization of obtaining microscale information in any groundwater system can be informed by modeling exercises such as those conducted for this study.

Assessment of blood-brain barrier penetration: in silico, in vitro and in vivo.

PubMed

Feng, Meihua Rose

2002-12-01

The amount of drug achieved and maintained in the brain after systemic administration is determined by the agent's permeability at blood-brain barrier (BBB), potential involvement of transport systems, and the distribution, metabolism and elimination properties. Passive diffusion permeability may be predicted by an in silico method based on a molecule's structure property. In vitro cell culture is another useful tool for the assessment of passive permeability and BBB transports (e.g. PGP, MRP). In situ or in vivo techniques like carotid artery single injection or perfusion, brain microdialysis, autoradiography, and others are used at various stages of drug discovery and development to estimate CNS penetration and PK/PD correlation. Each technique has its own application with specific advantages and limitations.

Darcy Permeability of Hollow Fiber Membrane Bundles Made from Membrana Polymethylpentene Fibers Used in Respiratory Assist Devices.

PubMed

Madhani, Shalv P; D'Aloiso, Brandon D; Frankowski, Brian; Federspiel, William J

2016-01-01

Hollow fiber membranes (HFMs) are used in blood oxygenators for cardiopulmonary bypass or in next generation artificial lungs. Flow analyses of these devices is typically done using computational fluid dynamics (CFD) modeling HFM bundles as porous media, using a Darcy permeability coefficient estimated from the Blake-Kozeny (BK) equation to account for viscous drag from fibers. We recently published how well this approach can predict Darcy permeability for fiber bundles made from polypropylene HFMs, showing the prediction can be significantly improved using an experimentally derived correlation between the BK constant (A) and bundle porosity (ε). In this study, we assessed how well our correlation for A worked for predicting the Darcy permeability of fiber bundles made from Membrana polymethylpentene (PMP) HFMs, which are increasingly being used clinically. Swatches in the porosity range of 0.4 to 0.8 were assessed in which sheets of fiber were stacked in parallel, perpendicular, and angled configurations. Our previously published correlation predicted Darcy within ±8%. A new correlation based on current and past measured permeability was determined: A = 497ε - 103; using this correlation measured Darcy permeability was within ±6%. This correlation varied from 8% to -3.5% of our prior correlation over the tested porosity range.

Darcy permeability of hollow fiber membrane bundles made from Membrana® Polymethylpentene (PMP) fibers used in respiratory assist devices

PubMed Central

Madhani, Shalv. P.; D’Aloiso, Brandon. D.; Frankowski, Brian.; Federspiel, William. J.

2016-01-01

Hollow fiber membranes (HFMs) are used in blood oxygenators for cardiopulmonary bypass or in next generation artificial lungs. Flow analyses of these devices is typically done using computational fluid dynamics (CFD) modeling HFM bundles as porous media, using a Darcy permeability coefficient estimated from the Blake – Kozeny (BK) equation to account for viscous drag from fibers. We recently published how well this approach can predict Darcy permeability for fiber bundles made from polypropylene HFMs, showing the prediction can be significantly improved using an experimentally derived correlation between the BK constant (A) and bundle porosity (ε). In this study, we assessed how well our correlation for A worked for predicting the Darcy permeability of fiber bundles made from Membrana® polymethylpentene (PMP) HFMs, which are increasingly being used clinically. Swatches in the porosity range of 0.4 to 0.8 were assessed in which sheets of fiber were stacked in parallel, perpendicular and angled configurations. Our previously published correlation predicted Darcy within ±8%. A new correlation based on current and past measured permeability was determined: A=497ε-103; using this correlation measured Darcy permeability was within ±6%. This correlation varied from 8% to −3.5% of our prior correlation over the tested porosity range. PMID:26809086

Early changes in coronary artery wall structure detected by microcomputed tomography in experimental hypercholesterolemia.

PubMed

Zhu, Xiang-Yang; Bentley, Michael D; Chade, Alejandro R; Ritman, Erik L; Lerman, Amir; Lerman, Lilach O

2007-09-01

Changes in the structure of the artery wall commence shortly after exposure to cardiovascular risk factors, such as hypercholesterolemia (HC), but may be difficult to detect. The ability to study vascular wall structure could be helpful in evaluation of the factors that instigate atherosclerosis and its pathomechanisms. The present study tested the hypothesis that early morphological changes in coronary arteries of hypercholesterolemic (HC) pigs can be detected using the novel X-ray contrast agent OsO(4) and three-dimensional micro-computed tomography (CT). Two groups of pigs were studied after they were fed a normal or an HC (2% cholesterol) diet for 12 wk. Hearts were harvested, coronary arteries were injected with 1% OsO(4) solution, and cardiac samples (6-mum-thick) were scanned by micro-CT. Layers of the epicardial coronary artery wall, early lesions, and perivascular OsO(4) accumulation were determined. Leakage of OsO(4) from myocardial microvessels was used to assess vascular permeability, which was correlated with immunoreactivity of vascular endothelial growth factor in corresponding histological cross sections. OsO(4) enhanced the visualization of coronary artery wall layers and facilitated detection of early lesions in HC in longitudinal tomographic sections of vascular segments. Increased density of perivascular OsO(4) in HC was correlated with increased vascular endothelial growth factor expression and suggested increased microvascular permeability. The use of OsO(4) as a contrast agent in micro-CT allows three-dimensional visualization of coronary artery wall structure, early lesion formation, and changes in vascular permeability. Therefore, this technique can be a useful tool in atherosclerosis research.

Support vector regression to predict porosity and permeability: Effect of sample size

NASA Astrophysics Data System (ADS)

Al-Anazi, A. F.; Gates, I. D.

2012-02-01

Porosity and permeability are key petrophysical parameters obtained from laboratory core analysis. Cores, obtained from drilled wells, are often few in number for most oil and gas fields. Porosity and permeability correlations based on conventional techniques such as linear regression or neural networks trained with core and geophysical logs suffer poor generalization to wells with only geophysical logs. The generalization problem of correlation models often becomes pronounced when the training sample size is small. This is attributed to the underlying assumption that conventional techniques employing the empirical risk minimization (ERM) inductive principle converge asymptotically to the true risk values as the number of samples increases. In small sample size estimation problems, the available training samples must span the complexity of the parameter space so that the model is able both to match the available training samples reasonably well and to generalize to new data. This is achieved using the structural risk minimization (SRM) inductive principle by matching the capability of the model to the available training data. One method that uses SRM is support vector regression (SVR) network. In this research, the capability of SVR to predict porosity and permeability in a heterogeneous sandstone reservoir under the effect of small sample size is evaluated. Particularly, the impact of Vapnik's ɛ-insensitivity loss function and least-modulus loss function on generalization performance was empirically investigated. The results are compared to the multilayer perception (MLP) neural network, a widely used regression method, which operates under the ERM principle. The mean square error and correlation coefficients were used to measure the quality of predictions. The results demonstrate that SVR yields consistently better predictions of the porosity and permeability with small sample size than the MLP method. Also, the performance of SVR depends on both kernel function type and loss functions used.

Pore Structure and Limit Pressure of Gas Slippage Effect in Tight Sandstone

PubMed Central

You, Lijun; Xue, Kunlin; Kang, Yili; Liao, Yi

2013-01-01

Gas slip effect is an important mechanism that the gas flow is different from liquid flow in porous media. It is generally considered that the lower the permeability in porous media is, the more severe slip effect of gas flow will be. We design and then carry out experiments with the increase of backpressure at the outlet of the core samples based on the definition of gas slip effect and in view of different levels of permeability of tight sandstone reservoir. This study inspects a limit pressure of the gas slip effect in tight sandstones and analyzes the characteristic parameter of capillary pressure curves. The experimental results indicate that gas slip effect can be eliminated when the backpressure reaches a limit pressure. When the backpressure exceeds the limit pressure, the measured gas permeability is a relatively stable value whose range is less than 3% for a given core sample. It is also found that the limit pressure increases with the decreasing in permeability and has close relation with pore structure of the core samples. The results have an important influence on correlation study on gas flow in porous medium, and are beneficial to reduce the workload of laboratory experiment. PMID:24379747

When good statistical models of aquifer heterogeneity go right: The impact of aquifer permeability structures on 3D flow and transport

NASA Astrophysics Data System (ADS)

Jankovic, I.; Maghrebi, M.; Fiori, A.; Dagan, G.

2017-02-01

Natural gradient steady flow of mean velocity U takes place in heterogeneous aquifers of random logconductivity Y = lnK , characterized by the univariate PDF f(Y) and autocorrelation ρY. Solute transport is analyzed through the Breakthrough Curve (BTC) at planes at distance x from the injection plane. The study examines the impact of permeability structures sharing same f(Y) and ρY, but differing in higher order statistics (integral scales of variograms of Y classes) upon the numerical solution of flow and transport. Flow and transport are solved for 3D structures, rather than the 2D models adopted in most of previous works. We considered a few permeability structures, including the widely employed multi-Gaussian, the connected and disconnected fields introduced by Zinn and Harvey [2003] and a model characterized by equipartition of the correlation scale among Y values. We also consider the impact of statistical anisotropy of Y, the shape of ρY and local diffusion. The main finding is that unlike 2D, the prediction of the BTC of ergodic plumes by numerical and analytical models for different structures is quite robust, displaying a seemingly universal behavior, and can be used with confidence in applications. However, as a prerequisite the basic parameters KG (the geometric mean), σY2 (the logconductivity variance) and I (the horizontal integral scale of ρY) have to be identified from field data. The results suggest that narrowing down the gap between the BTCs in applications can be achieved by obtaining Kef (the effective conductivity) or U independently (e.g. by pumping tests), rather than attempting to characterize the permeability structure beyond f(Y) and ρY.

Intracellular localization of a group II chaperonin indicates a membrane-related function

NASA Technical Reports Server (NTRS)

Trent, Jonathan D.; Kagawa, Hiromi K.; Paavola, Chad D.; McMillan, R. Andrew; Howard, Jeanie; Jahnke, Linda; Lavin, Colleen; Embaye, Tsegereda; Henze, Christopher E.

2003-01-01

Chaperonins are protein complexes that are believed to function as part of a protein folding system in the cytoplasm of the cell. We observed, however, that the group II chaperonins known as rosettasomes in the hyperthermophilic archaeon Sulfolobus shibatae, are not cytoplasmic but membrane associated. This association was observed in cultures grown at 60 degrees C and 76 degrees C or heat-shocked at 85 degrees C by using immunofluorescence microscopy and in thick sections of rapidly frozen cells grown at 76 degrees C by using immunogold electron microscopy. We observed that increased abundance of rosettasomes after heat shock correlated with decreased membrane permeability at lethal temperature (92 degrees C). This change in permeability was not seen in cells heat-shocked in the presence of the amino acid analogue azetidine 2-carboxylic acid, indicating functional protein synthesis influences permeability. Azetidine experiments also indicated that observed heat-induced changes in lipid composition in S. shibatae could not account for changes in membrane permeability. Rosettasomes purified from cultures grown at 60 degrees C and 76 degrees C or heat-shocked at 85 degrees C bind to liposomes made from either the bipolar tetraether lipids of Sulfolobus or a variety of artificial lipid mixtures. The presence of rosettasomes did not significantly change the transition temperature of liposomes, as indicated by differential scanning calorimetry, or the proton permeability of liposomes, as indicated by pyranine fluorescence. We propose that these group II chaperonins function as a structural element in the natural membrane based on their intracellular location, the correlation between their functional abundance and membrane permeability, and their potential distribution on the membrane surface.

Is vertebrate mortality correlated to potential permeability by underpasses along low-traffic roads?

PubMed

Delgado, Juan D; Morelli, Federico; Arroyo, Natalia L; Durán, Jorge; Rodríguez, Alexandra; Rosal, Antonio; Palenzuela, María Del Valle; Rodríguez, Jesús D G P

2018-09-01

Road permeability to animal movements depends among several factors on structures which, integrated in the road design, operate as safe conducts to mitigate vehicle collision and barrier effects. There is abundant evidence that wildlife makes use of such structures as safe passages to cross roads. We analyzed the spatial relationship between road drainage elements (N = 253; mostly culverts) as potential faunal underpasses, and mortality due to vehicle collisions in two seasons and on four relatively low-traffic roads (<5000 cars/day) traversing oak rangelands of western Andalusia (S Spain). Focusing on amphibians, reptiles and mammals, we recorded and located casualties (N = 238 individuals, 35 species) along these roads, identifying and characterizing all potential underpasses. Overall frequencies of casualties and spatial distribution were highly variable both within and among these roads. We obtained an estimation of potential permeability for the different roads. We detected, located and described a wide supply and a very variable pattern of drainage culverts and other underpasses, with differences among roads in passage attributes potentially affecting permeability for wildlife, such as spatial arrangement, number, density (frequency or concentration of passages) and dimensions. We used Mantel tests to assess spatial congruence of passages and road-killed animals. We applied generalized linear mixed models fitted by maximum likelihood through Akaike Information Criterion to explain the variation in the distance of the 238 casualties to the nearest underpasses, with road transect and season as random factors, and traffic intensity, speed and vertebrate class as fixed effects. Both road-killed animals and underpass distribution followed aggregated patterns, and casualties were not significantly related to underpasses along any of the 4 roads. There were no differences in distance of casualties to the nearest underpass for the three vertebrate classes. Although existing underpasses were abundant, we could not correlate potential permeability with reduced mortality along these roads, and other factors potentially affecting roadkill aggregations should be evaluated along with permeability assessment. Mitigation of road-caused mortality can still be greatly improved for these roads, through measures of reconditioning and proper management of existing underpasses, aiming to maximize road permeability and reducing major impacts upon animal populations of Andalusian rangelands. Copyright © 2018 Elsevier Ltd. All rights reserved.

Beach Resilience to Coastal Structures on a Natural Beach

NASA Astrophysics Data System (ADS)

Torres-Freyermuth, A.; Medellín, G.; Hofman, A.; Tereszkiewicz, P.; Palemón-Arcos, L.; López-González, J.

2016-12-01

Beach resilience plays an important role on reducing coastal risk associated to either natural or human induced perturbations affecting the coast. Field experiments were conducted in order to investigate beach resilience in Sisal, Yucatán. Both impermeable and permeable 14-m groins were designed to asses the impact of coastal structures on the beach morphology during a 24-hour period. The experiments were conducted in the spring of 2015 and 2016, allowing the assessment of both structures under similar forcing conditions. Intense sea breeze events (W>12 m/s) generated high-angle short-waves, driving alongshore transport in the swash zone. Wind, waves, tides, and currents were measured concurrently and are correlated with beach morphology evolution data derived from intense monitoring conducted during the structure deployment. The impermeable structure induced a significant beach accretion (>60 m3/day) in the updrift side of the structure causing a tremendous impact downdrift. On the other hand, the permeable groin induced a smaller but still significant accretion (40 m3/day), allowing sediment bypass throughout the structure. Furthermore, the beach surveying continued after structures removal in order to estimate the beach recovery capability. Field observations show that the impact of the structure on the morphology is negligible six days after structure removal for the impermeable groin and only one day for the permeable structure. The latter suggests the high beach resilience of the study area. We acknowledge field support provided by researchers and students at the LIPC-UNAM. Financial support was provided by CONACYT (Projects LN271544 and Cátedras 1146), DGAPA-UNAM (PAPIIT-IN107315) and Grupo BARI.

Structure and physical characteristics of pumice from the climactic eruption of Mount Mazama (Crater Lake), Oregon

USGS Publications Warehouse

Klug, C.; Cashman, K.; Bacon, C.

2002-01-01

The vesicularity, permeability, and structure of pumice clasts provide insight into conditions of vesiculation and fragmentation during Plinian fall and pyroclastic flow-producing phases of the ???7,700 cal. year B.P. climactic eruption of Mount Mazama (Crater Lake), Oregon. We show that bulk properties (vesicularity and permeability) can be correlated with internal textures and that the clast structure can be related to inferred changes in eruption conditions. The vesicularity of all pumice clasts is 75-88%, with >90% interconnected pore volume. However, pumice clasts from the Plinian fall deposits exhibit a wider vesicularity range and higher volume percentage of interconnected vesicles than do clasts from pyroclastic-flow deposits. Pumice permeabilities also differ between the two clast types, with pumice from the fall deposit having higher minimum permeabilities (???5??10-13 m2) and a narrower permeability range (5-50??10-13 m2) than clasts from pyroclastic-flow deposits (0.2-330??10-13 m2). The observed permeability can be modeled to estimate average vesicle aperture radii of 1-5 ??m for the fall deposit clasts and 0.25-1 ??m for clasts from the pyroclastic flows. High vesicle number densities (???109 cm-3) in all clasts suggest that bubble nucleation occured rapidly and at high supersaturations. Post-nucleation modifications to bubble populations include both bubble growth and coalescence. A single stage of bubble nucleation and growth can account for 35-60% of the vesicle population in clasts from the fall deposits, and 65-80% in pumice from pyroclastic flows. Large vesicles form a separate population which defines a power law distribution with fractal dimension D=3.3 (range 3.0-3.5). The large D.value, coupled with textural evidence, suggests that the large vesicles formed primarily by coalescence. When viewed together, the bulk properties (vesicularity, permeability) and textural characteristics of all clasts indicate rapid bubble nucleation followed by bubble growth, coalescence and permeability development. This sequence of events is best explained by nucleation in response to a downward-propagating decompression wave, followed by rapid bubble growth and coalescence prior to magma disruption by fragmentation. The heterogeneity of vesicle sizes and shapes, and the absence of differential expansion across individual clasts, suggest that post-fragmentation expansion played a limited role in the development of pumice structure. The higher vesicle number densities and lower permeabilities of pyroclastic-flow clasts indicate limited coalescence and suggest that fragmentation occurred shortly after decompression. Either increased eruption velocities or increased depth of fragmentation accompanying caldera collapse could explain compression of the pre-fragmentation vesiculation interval.

Hydraulic Properties of Diatomaceous Structure on Physical Properties and Wire-line Logging - An example of off Sanriku, North Japan -

NASA Astrophysics Data System (ADS)

Ojima, T.; Saito, S.

2013-12-01

During Ocean Drilling Program (ODP) Leg. 186, two sites (Site 1150 and Site 1151) were drilled on the continental slope of the deep-sea forearc basin of northern Japan. Diatomaceous sediments were recovered Site 1150 (39° 10.9' N, 143° 19.9' E) and Site 1151 (38° 45.1' N, 143° 20.0' E), and the depth of each site is 1181.60 mbsf and 1113.60 mbsf, respectively. This area is under the influence of the Oyashio current and is one of the highly bio-productive regions of the North Pacific Ocean (Motoyama et al., 2004). The combination of high productivity and active tectonic deformation that often caused high rate accumulating of fossil and organic rich sediments. The onboard results of porosity measurements show high value (50-70 %) down to 1000 mbsf, and obviously higher than nearby subduction trench, Nankai Trough (Taylor and Fisher, 1993). There is a possibility that diatomaceous shell keep a frame structure from effective stress and load pressure. On another drilling site result, DSDP (Deep Sea Drilling Project) Leg. 19 located 60 km to the north of ODP sites, was reported high value of porosity, but recognized only shallow range (>500 mbsf) (Shephard and Bryant, 1980). We focused on the relationships between physical property, microstructure, and logging data at deep range(~1000 mbsf). We picked 14 samples to observe microstructure using SEM and measure permeability using flow-ump approach (1.5-4.5 MPa). Logging data were collected using wireline logging (Sacks and Suyehiro, 2003). Based on these results, it is expected that microstructure and logging can be integrated into a general model of core-log correlation. We observed many pores in and around diatom fossils using SEM even in the sample from deeper than 1000 mbsf, and measured pore size distribution and permeability at each depth. Generally, porosity decreases by effective stress and load pressure, and permeability also decrease with down hole. In this site, we recognized down hole decreases of pore space and preservations of diatom shell by using SEM. However, measured permeability displayed subtle patterns in downhole. These results can be considered that intact diatom shells don't always contribute to permeability, while fractured fabrics play good correlation with consolidation. Furthermore, correlations between water content ratio, permeability, and ithostratigraphic variance can be considered as a good index for hydraulic sedimental conditions. In this presentation, We show results of data integration of lithostratigraphy, measurements values, logging data, and physical properties.

Permeability structure of a highly heterogeneous transgressive-marine complex: Tocito Sandstone, New Mexico

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lambert, M.L.; Cole, R.D.

1996-01-01

The Tocito Sandstone Member of the Mancos Shale is an Upper Cretaceous shallow-marine sandstone and mudrock complex deposited along the western margin of the Western Interior seaway. The Tocito is a major hydrocarbon producer in the San Juan Basin (approximately 117 million barrels of oil and 79 billion cubic feet of gas). Because of reservoir heterogeneity, ultimate Tocito oil recovery factors are low, generally between 10 and 20 percent. To enhance understanding of permeability heterogeneity in the Tocito, we have undertaken a detailed surface and subsurface investigation. A total of 2,697 permeability measurements have been made using minipermeameters. Permeability variationmore » within the Tocito is controlled by two principal factors: lithofacies and burial/diagenetic history. Coarser grained and better sorted lithofacies have the highest permeability. The permeability values from outcrop and shallow subsurface cores are dramatically higher than those from deep subsurface cores. This is due to dissolution of grains and calcite cement, and decompaction that preferentially affected the outcrop and shallow subsurface. Correlation lengths for permeability values along horizontal transacts are typically less than 3 m, whereas those for vertical transacts are usually less than 0.6 m. These data suggest that small grid block sizes should be used during reservoir simulations if the investigator wishes to accurately capture the reservoir heterogeneity.« less

Permeability structure of a highly heterogeneous transgressive-marine complex: Tocito Sandstone, New Mexico

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lambert, M.L.; Cole, R.D.

1996-12-31

The Tocito Sandstone Member of the Mancos Shale is an Upper Cretaceous shallow-marine sandstone and mudrock complex deposited along the western margin of the Western Interior seaway. The Tocito is a major hydrocarbon producer in the San Juan Basin (approximately 117 million barrels of oil and 79 billion cubic feet of gas). Because of reservoir heterogeneity, ultimate Tocito oil recovery factors are low, generally between 10 and 20 percent. To enhance understanding of permeability heterogeneity in the Tocito, we have undertaken a detailed surface and subsurface investigation. A total of 2,697 permeability measurements have been made using minipermeameters. Permeability variationmore » within the Tocito is controlled by two principal factors: lithofacies and burial/diagenetic history. Coarser grained and better sorted lithofacies have the highest permeability. The permeability values from outcrop and shallow subsurface cores are dramatically higher than those from deep subsurface cores. This is due to dissolution of grains and calcite cement, and decompaction that preferentially affected the outcrop and shallow subsurface. Correlation lengths for permeability values along horizontal transacts are typically less than 3 m, whereas those for vertical transacts are usually less than 0.6 m. These data suggest that small grid block sizes should be used during reservoir simulations if the investigator wishes to accurately capture the reservoir heterogeneity.« less

CORRELATION OF FLORIDA SOIL-GAS PERMEABILITIES WITH GRAIN SIZE, MOISTURE, AND POROSITY

EPA Science Inventory

The report describes a new correlation or predicting gas permeabilities of undisturbed or recompacted soils from their average grain diameter (d), moisture saturation factor (m), and porosity (p). he correlation exhibits a geometric standard deviation (GSD) of only 1.27 between m...

Systematic Analysis of the Effect of Small Scale Permeability Heterogeneity on Hyporheic Exchange Flux and Residence Times

NASA Astrophysics Data System (ADS)

Laube, G.; Schmidt, C.; Fleckenstein, J. H.

2014-12-01

The hyporheic zone (HZ) contributes significantly to whole stream biogeochemical cycling. Biogeochemical reactions within the HZ are often transport limited, thus, understanding these reactions requires knowledge about the magnitude of hyporheic fluxes (HF) and the residence time (RT) of these fluxes within the HZ. While the hydraulics of HF are relatively well understood, studies addressing the influence of permeability heterogeneity lack systematic analysis and have even produced contradictory results (e.g. [1] vs. [2]). In order to close this gap, this study uses a statistical numerical approach to elucidate the influence of permeability heterogeneity on HF and RT. We simulated and evaluated 3750 2D-scenarios of sediment heterogeneity by means of Gaussian random fields with focus on total HF and RT distribution. The scenarios were based on ten realizations of each of all possible combinations of 15 different correlation lengths, 5 dipping angles and 5 permeability variances. Roughly 500 hyporheic stream traces were analyzed per simulation, for a total of almost two million stream traces analyzed for correlations between permeability heterogeneity, HF, and RT. Total HF and the RT variance positively correlated with permeability variance while the mean RT negatively correlated with permeability variance. In contrast, changes in correlation lengths and dipping angles had little effect on the examined properties RT and HF. These results provide a possible explanation of the seemingly contradictory conclusions of recent studies, given that the permeability variances in these studies differ by several orders of magnitude. [1] Bardini, L., Boano, F., Cardenas, M.B, Sawyer, A.H, Revelli, R. and Ridolfi, L. "Small-Scale Permeability Heterogeneity Has Negligible Effects on Nutrient Cycling in Streambeds." Geophysical Research Letters, 2013. doi:10.1002/grl.50224. [2] Zhou, Y., Ritzi, R. W., Soltanian, M. R. and Dominic, D. F. "The Influence of Streambed Heterogeneity on Hyporheic Flow in Gravelly Rivers." Groundwater, 2013. doi:10.1111/gwat.12048.

Uncertainty in dual permeability model parameters for structured soils.

PubMed

Arora, B; Mohanty, B P; McGuire, J T

2012-01-01

Successful application of dual permeability models (DPM) to predict contaminant transport is contingent upon measured or inversely estimated soil hydraulic and solute transport parameters. The difficulty in unique identification of parameters for the additional macropore- and matrix-macropore interface regions, and knowledge about requisite experimental data for DPM has not been resolved to date. Therefore, this study quantifies uncertainty in dual permeability model parameters of experimental soil columns with different macropore distributions (single macropore, and low- and high-density multiple macropores). Uncertainty evaluation is conducted using adaptive Markov chain Monte Carlo (AMCMC) and conventional Metropolis-Hastings (MH) algorithms while assuming 10 out of 17 parameters to be uncertain or random. Results indicate that AMCMC resolves parameter correlations and exhibits fast convergence for all DPM parameters while MH displays large posterior correlations for various parameters. This study demonstrates that the choice of parameter sampling algorithms is paramount in obtaining unique DPM parameters when information on covariance structure is lacking, or else additional information on parameter correlations must be supplied to resolve the problem of equifinality of DPM parameters. This study also highlights the placement and significance of matrix-macropore interface in flow experiments of soil columns with different macropore densities. Histograms for certain soil hydraulic parameters display tri-modal characteristics implying that macropores are drained first followed by the interface region and then by pores of the matrix domain in drainage experiments. Results indicate that hydraulic properties and behavior of the matrix-macropore interface is not only a function of saturated hydraulic conductivity of the macroporematrix interface ( K sa ) and macropore tortuosity ( l f ) but also of other parameters of the matrix and macropore domains.

Uncertainty in dual permeability model parameters for structured soils

NASA Astrophysics Data System (ADS)

Arora, B.; Mohanty, B. P.; McGuire, J. T.

2012-01-01

Successful application of dual permeability models (DPM) to predict contaminant transport is contingent upon measured or inversely estimated soil hydraulic and solute transport parameters. The difficulty in unique identification of parameters for the additional macropore- and matrix-macropore interface regions, and knowledge about requisite experimental data for DPM has not been resolved to date. Therefore, this study quantifies uncertainty in dual permeability model parameters of experimental soil columns with different macropore distributions (single macropore, and low- and high-density multiple macropores). Uncertainty evaluation is conducted using adaptive Markov chain Monte Carlo (AMCMC) and conventional Metropolis-Hastings (MH) algorithms while assuming 10 out of 17 parameters to be uncertain or random. Results indicate that AMCMC resolves parameter correlations and exhibits fast convergence for all DPM parameters while MH displays large posterior correlations for various parameters. This study demonstrates that the choice of parameter sampling algorithms is paramount in obtaining unique DPM parameters when information on covariance structure is lacking, or else additional information on parameter correlations must be supplied to resolve the problem of equifinality of DPM parameters. This study also highlights the placement and significance of matrix-macropore interface in flow experiments of soil columns with different macropore densities. Histograms for certain soil hydraulic parameters display tri-modal characteristics implying that macropores are drained first followed by the interface region and then by pores of the matrix domain in drainage experiments. Results indicate that hydraulic properties and behavior of the matrix-macropore interface is not only a function of saturated hydraulic conductivity of the macroporematrix interface (Ksa) and macropore tortuosity (lf) but also of other parameters of the matrix and macropore domains.

Origin of Permeability and Structure of Flows in Fractured Media

NASA Astrophysics Data System (ADS)

De Dreuzy, J.; Darcel, C.; Davy, P.; Erhel, J.; Le Goc, R.; Maillot, J.; Meheust, Y.; Pichot, G.; Poirriez, B.

2013-12-01

After more than three decades of research, flows in fractured media have been shown to result from multi-scale geological structures. Flows result non-exclusively from the damage zone of the large faults, from the percolation within denser networks of smaller fractures, from the aperture heterogeneity within the fracture planes and from some remaining permeability within the matrix. While the effect of each of these causes has been studied independently, global assessments of the main determinisms is still needed. We propose a general approach to determine the geological structures responsible for flows, their permeability and their organization based on field data and numerical modeling [de Dreuzy et al., 2012b]. Multi-scale synthetic networks are reconstructed from field data and simplified mechanical modeling [Davy et al., 2010]. High-performance numerical methods are developed to comply with the specificities of the geometry and physical properties of the fractured media [Pichot et al., 2010; Pichot et al., 2012]. And, based on a large Monte-Carlo sampling, we determine the key determinisms of fractured permeability and flows (Figure). We illustrate our approach on the respective influence of fracture apertures and fracture correlation patterns at large scale. We show the potential role of fracture intersections, so far overlooked between the fracture and the network scales. We also demonstrate how fracture correlations reduce the bulk fracture permeability. Using this analysis, we highlight the need for more specific in-situ characterization of fracture flow structures. Fracture modeling and characterization are necessary to meet the new requirements of a growing number of applications where fractures appear both as potential advantages to enhance permeability and drawbacks for safety, e.g. in energy storage, stimulated geothermal energy and non-conventional gas productions. References Davy, P., et al. (2010), A likely universal model of fracture scaling and its consequence for crustal hydromechanics, Journal of Geophysical Research-Solid Earth, 115, 13. de Dreuzy, J.-R., et al. (2012a), Influence of fracture scale heterogeneity on the flow properties of three-dimensional Discrete Fracture Networks (DFN), J. Geophys. Res.-Earth Surf., 117(B11207), 21 PP. de Dreuzy, J.-R., et al. (2012b), Synthetic benchmark for modeling flow in 3D fractured media, Computers and Geosciences(0). Pichot, G., et al. (2010), A Mixed Hybrid Mortar Method for solving flow in Discrete Fracture Networks, Applicable Analysis, 89(10), 1729-1643. Pichot, G., et al. (2012), Flow simulation in 3D multi-scale fractured networks using non-matching meshes, SIAM Journal on Scientific Computing (SISC), 34(1). Figure: (a) Fracture network with a broad-range of fracture lengths. (b) Flows (log-scale) with homogeneous fractures. (c) Flows (log-scale) with heterogeneous fractures [de Dreuzy et al., 2012a]. The impact of the fracture apertures (c) is illustrated on the organization of flows.

On the impact of spatial heterogeneous permeability distributions on the development of free convection cells in the Perth Basin, Australia.

NASA Astrophysics Data System (ADS)

Niederau, Jan; Ebigbo, Anozie; Freitag, Sebastian; Marquart, Gabriele; Clauser, Christoph

2014-05-01

Recent increase in exploration of the geothermal energy potential of the Perth Metropolitan Area (PMA) results in the need for reliable and robust reservoir models in order to explore rock properties and temperature distributions in the subsurface, where free convection in the main reservoir (Yarragadee Aquifer) is likely to occur [1]. While the structure of the Perth Basin has been refined recently, the heterogeneity and spatial complexity of permeability was up till now mainly neglected. An integrated, three dimensional tectonostratigraphic model of the PMA is constructed, using the modeling software '3D GeoModeller' and data of numerous artesian and petroleum wells. Comprising the region around the city of Perth, the model covers an area of about 5000 km2 up to a depth of 4.5 km, with focus on adequate representation of the main reservoir. We further construct a numerical model for fluid flow and heat transport in the Yarragadee Aquifer. Porosity distributions are deduced from well logs and linked to permeability by a calibrated correlation, based on a fractal approach. Three different cases are simulated using the FD code SHEMAT-Suite, in order to assess the influence of spatial heterogeneity of porosity and permeability on the development of free convection cells. constant porosity and permeability for the entire aquifer porosity and permeability decreasing with depth, thus reflecting compaction a conditional random permeability field within prescribed limits and for given correlation length In order to improve understanding of model correctness, as well as identification and comparison of convection cells in different simulations, we are developing a specialized visualization tool tailored to this purpose. The three different scenarios show distinctions in the distribution of convection cells. Where the Yarragadee Aquifer is in contact with overlying aquifers, regions of downflow develop. These in turn have a strong impact on the regional flow field and therefore temperature. The heterogeneous distribution of permeability seems to control the convection pattern on a smaller scale. References [1] Schilling, O., Sheldon, H.A., Reid, L.B., Corbel, S. 2013. Hydrothermal models of the Perth metropolitan area, Western Australia: implications for geothermal energy. Hydrogeology Journal, Vol. 21, 605-621.

Impact of mineralization on carbon dioxide migration in term of critical value of fault permeability.

NASA Astrophysics Data System (ADS)

Alshammari, A.; Brantley, D.; Knapp, C. C.; Lakshmi, V.

2017-12-01

In this study, multi chemical components ((H2O, H2S) will be injected with supercritical carbon dioxide in onshore part of South Georgia Rift (SGR) Basin model. Chemical reaction expected issue between these components to produce stable mineral of carbonite rocks by the time. The 3D geological model has been extracted from petrel software and computer modelling group (CMG) package software has been used to build simulation model explain the effect of mineralization on fault permeability that control on plume migration critically between (0-0.05 m Darcy). The expected results will be correlated with single component case (CO2 only) to evaluate the importance the mineralization on CO2 plume migration in structure and stratigraphic traps and detect the variation of fault leakage in case of critical values (low permeability). The results will also, show us the ratio of every trapped phase in (SGR) basin reservoir model.

An improved method for permeability estimation of the bioclastic limestone reservoir based on NMR data

NASA Astrophysics Data System (ADS)

Ge, Xinmin; Fan, Yiren; Liu, Jianyu; Zhang, Li; Han, Yujiao; Xing, Donghui

2017-10-01

Permeability is an important parameter in formation evaluation since it controls the fluid transportation of porous rocks. However, it is challengeable to compute the permeability of bioclastic limestone reservoirs by conventional methods linking petrophysical and geophysical data, due to the complex pore distributions. A new method is presented to estimate the permeability based on laboratory and downhole nuclear magnetic resonance (NMR) measurements. We divide the pore space into four intervals by the inflection points between the pore radius and the transversal relaxation time. Relationships between permeability and percentages of different pore intervals are investigated to investigate influential factors on the fluid transportation. Furthermore, an empirical model, which takes into account of the pore size distributions, is presented to compute the permeability. 212 core samples in our case show that the accuracy of permeability calculation is improved from 0.542 (SDR model), 0.507 (TIM model), 0.455 (conventional porosity-permeability regressions) to 0.803. To enhance the precision of downhole application of the new model, we developed a fluid correction algorithm to construct the water spectrum of in-situ NMR data, aiming to eliminate the influence of oil on the magnetization. The result reveals that permeability is positively correlated with percentages of mega-pores and macro-pores, but negatively correlated with the percentage of micro-pores. Poor correlation is observed between permeability and the percentage of meso-pores. NMR magnetizations and T2 spectrums after the fluid correction agree well with laboratory results for samples saturated with water. Field application indicates that the improved method provides better performance than conventional models such as Schlumberger-Doll Research equation, Timur-Coates equation, and porosity-permeability regressions.

Unconventional Tight Reservoirs Characterization with Nuclear Magnetic Resonance

NASA Astrophysics Data System (ADS)

Santiago, C. J. S.; Solatpour, R.; Kantzas, A.

2017-12-01

The increase in tight reservoir exploitation projects causes producing many papers each year on new, modern, and modified methods and techniques on estimating characteristics of these reservoirs. The most ambiguous of all basic reservoir property estimations deals with permeability. One of the logging methods that is advertised to predict permeability but is always met by skepticism is Nuclear Magnetic Resonance (NMR). The ability of NMR to differentiate between bound and movable fluids and providing porosity increased the capability of NMR as a permeability prediction technique. This leads to a multitude of publications and the motivation of a review paper on this subject by Babadagli et al. (2002). The first part of this presentation is dedicated to an extensive review of the existing correlation models for NMR based estimates of tight reservoir permeability to update this topic. On the second part, the collected literature information is used to analyze new experimental data. The data are collected from tight reservoirs from Canada, the Middle East, and China. A case study is created to apply NMR measurement in the prediction of reservoir characterization parameters such as porosity, permeability, cut-offs, irreducible saturations etc. Moreover, permeability correlations are utilized to predict permeability. NMR experiments were conducted on water saturated cores. NMR T2 relaxation times were measured. NMR porosity, the geometric mean relaxation time (T2gm), Irreducible Bulk Volume (BVI), and Movable Bulk Volume (BVM) were calculated. The correlation coefficients were computed based on multiple regression analysis. Results are cross plots of NMR permeability versus the independently measured Klinkenberg corrected permeability. More complicated equations are discussed. Error analysis of models is presented and compared. This presentation is beneficial in understanding existing tight reservoir permeability models. The results can be used as a guide for choosing the best permeability estimation model for tight reservoirs data.

Correlation of Three Techniques for Determining Soil Permeability

ERIC Educational Resources Information Center

Winneberger, John T.

1974-01-01

Discusses problems of acquiring adequate results when measuring for soil permeability. Correlates three relatively simple techniques that could be helpful to the inexperienced technician dealing with septic tank practices. An appendix includes procedures for valid percolation tests. (MLB)

Structure-specific magnetic field inhomogeneities and its effect on the correlation time.

PubMed

Ziener, Christian H; Bauer, Wolfgang R; Melkus, Gerd; Weber, Thomas; Herold, Volker; Jakob, Peter M

2006-12-01

We describe the relationship between the correlation time and microscopic spatial inhomogeneities in the static magnetic field. The theory takes into account diffusion of nuclear spins in the inhomogeneous field created by magnetized objects. A simple general expression for the correlation time is obtained. It is shown that the correlation time is dependent on a characteristic length, the diffusion coefficient of surrounding medium, the permeability of the surface and the volume fraction of the magnetized objects. For specific geometries (spheres and cylinders), exact analytical expressions for the correlation time are given. The theory can be applied to contrast agents (magnetically labeled cells), capillary network, BOLD effect and so forth.

Variation of brine compositions resulting from flow from matrix or fracture permeability, investigated by high pressure laboratory experiments

NASA Astrophysics Data System (ADS)

Poszwa, A. C.; Coleman, M. L.; Pouya, A.; Ader, M.; Bounenni, A.

2003-04-01

Planning oil production from a chalk reservoir oilfield is difficult because the matrix usually has low permeability despite its high porosity. Most oil is thought to come from fracture porosity but the matrix contribution should increase as compaction occurs during production. To better understand the respective contributions from matrix and fracture, we studied the geochemical characteristics of fluids using high-pressure brine flow experiments on chalk cores. During the experiment axial load was changed relative to confining pressure to induce fractures and to close them again. We used chlorine stable isotope variations to study fluid pathway, because chlorine is a chemically conservative element in sedimentary systems and its isotopes fractionate only with physical processes like diffusion or adsorption that could occur mainly in the chalk matrix. A first experiment was performed on a very porous chalk from Henley (on-shore UK) and using a low-salinity brine. Large variations of brine Cl isotope composition were observed (from -0.56 to +0.08 per mil). The variations were correlated positively with the brine flux through the chalk and the permeability of the rock, both parameters controlled by the rock fracturing. A second experiment used brine with salinity similar to that of seawater. In this case, chemical and isotopic variations were not significant. From the beginning, the chalk structure seems to have been destroyed very quickly (induced fracture porosity collapsed) possibly because of the fluid nature, so that whatever pressure was applied, the permeability did not change significantly. Using Valhall reservoir chalk (offshore Norwegian North Sea) and fluid half the salinity of seawater in a third experiment, we obtained a large range of permeabilities. Brine isotopic trends were very similar on average to those of the first experiment even though variations were smaller (Cl isotopes from -0.09 to +0.29 per mil) and not significantly correlated simply to permeability values. The highest isotopic values were in brine flowed through chalk when the permeability was high and fractures opened; the lowest values were in brine flowed through the chalk when its permeability was reduced by closing fractures and increasing the relative contribution from matrix flow where diffusion processes fractionated chlorine isotopes. From this work it seems that the relative contributions from fracture and matrix permeability in reservoirs can be estimated from the geochemical compositions of brines that flowed from them.

A smart membrane based on an antigen-responsive hydrogel.

PubMed

Zhang, Rongsheng; Bowyer, Adrian; Eisenthal, Robert; Hubble, John

2007-07-01

Hydrogel membranes have been fabricated that incorporate antibody/antigen moieties. The permeability of large solutes through these membranes is dependent on the presence of soluble antigen that can compete with the internal interactions between antibody and antigen leading to an increase in gel mesh size. Specifically, the membrane's structure is based on a dextran backbone grafted with a fluorescein isothiocyanate (FITC) antigen and a sheep anti-FITC IgG antibody. The backbone is covalently cross-linked by conjugated divinyl sulfone (DVS) groups. The gel structure is additionally stabilized by affinity crosslinks formed by biospecific interactions between the bound IgG and FITC. FTIR spectra of the gel are consistent with formation of covalent bonds between cysteine groups in the IgG and DVS groups in the dextran. Results obtained using isothermal titration calorimetry (ITC) confirmed the competitive interaction binding between IgG-FITC-dextran and free sodium fluorescein at pH 5.0. Scanning electron microscopy (SEM) of samples prepared using cryofixation and cryofracturing techniques showed that observed changes in permeability correlate with free fluorescein-dependent structural changes in the gel. Three-dimensional images obtained from confocal laser scanning microscopy show that these changes occur throughout the gel and indicate that SEM results are not artifacts of sample preparation. The permeability of these gels, as shown by blue-dextran (12 kDa) diffusion, increases in response to the presence of free fluorescein of the external medium, which causes competitive displacement of the affinity cross-links. Sequential addition and removal of sodium fluorescein showed that these permeability changes are reversible. (c) 2006 Wiley Periodicals, Inc.

Investigation of the Klinkenberg effect in a micro/nanoporous medium by direct simulation Monte Carlo method

NASA Astrophysics Data System (ADS)

Yang, Guang; Weigand, Bernhard

2018-04-01

The pressure-driven gas transport characteristics through a porous medium consisting of arrays of discrete elements is investigated by using the direct simulation Monte Carlo (DSMC) method. Different porous structures are considered, accounting for both two- and three-dimensional arrangements of basic microscale and nanoscale elements. The pore scale flow patterns in the porous medium are obtained, and the Knudsen diffusion in the pores is studied in detail for slip and transition flow regimes. A new effective pore size of the porous medium is defined, which is a function of the porosity, the tortuosity, the contraction factor, and the intrinsic permeability of the porous medium. It is found that the Klinkenberg effect in different porous structures can be fully described by the Knudsen number characterized by the effective pore size. The accuracies of some widely used Klinkenberg correlations are evaluated by the present DSMC results. It is also found that the available correlations for apparent permeability, most of which are derived from simple pipe or channel flows, can still be applicative for more complex porous media flows, by using the effective pore size defined in this study.

In-situ intestinal rat perfusions for human Fabs prediction and BCS permeability class determination: Investigation of the single-pass vs. the Doluisio experimental approaches.

PubMed

Lozoya-Agullo, Isabel; Zur, Moran; Wolk, Omri; Beig, Avital; González-Álvarez, Isabel; González-Álvarez, Marta; Merino-Sanjuán, Matilde; Bermejo, Marival; Dahan, Arik

2015-03-01

Intestinal drug permeability has been recognized as a critical determinant of the fraction dose absorbed, with direct influence on bioavailability, bioequivalence and biowaiver. The purpose of this research was to compare intestinal permeability values obtained by two different intestinal rat perfusion methods: the single-pass intestinal perfusion (SPIP) model and the Doluisio (closed-loop) rat perfusion method. A list of 15 model drugs with different permeability characteristics (low, moderate, and high, as well as passively and actively absorbed) was constructed. We assessed the rat intestinal permeability of these 15 model drugs in both SPIP and the Doluisio methods, and evaluated the correlation between them. We then evaluated the ability of each of these methods to predict the fraction dose absorbed (Fabs) in humans, and to assign the correct BCS permeability class membership. Excellent correlation was obtained between the two experimental methods (r(2)=0.93). An excellent correlation was also shown between literature Fabs values and the predictions made by both rat perfusion techniques. Similar BCS permeability class membership was designated by literature data and by both SPIP and Doluisio methods for all compounds. In conclusion, the SPIP model and the Doluisio (closed-loop) rat perfusion method are both equally useful for obtaining intestinal permeability values that can be used for Fabs prediction and BCS classification. Copyright © 2015 Elsevier B.V. All rights reserved.

Use of biopartitioning micellar chromatography and RP-HPLC for the determination of blood-brain barrier penetration of α-adrenergic/imidazoline receptor ligands, and QSPR analysis.

PubMed

Vucicevic, J; Popovic, M; Nikolic, K; Filipic, S; Obradovic, D; Agbaba, D

2017-03-01

For this study, 31 compounds, including 16 imidazoline/α-adrenergic receptor (IRs/α-ARs) ligands and 15 central nervous system (CNS) drugs, were characterized in terms of the retention factors (k) obtained using biopartitioning micellar and classical reversed phase chromatography (log k BMC and log k wRP , respectively). Based on the retention factor (log k wRP ) and slope of the linear curve (S) the isocratic parameter (φ 0 ) was calculated. Obtained retention factors were correlated with experimental log BB values for the group of examined compounds. High correlations were obtained between logarithm of biopartitioning micellar chromatography (BMC) retention factor and effective permeability (r(log k BMC /log BB): 0.77), while for RP-HPLC system the correlations were lower (r(log k wRP /log BB): 0.58; r(S/log BB): -0.50; r(φ 0 /P e ): 0.61). Based on the log k BMC retention data and calculated molecular parameters of the examined compounds, quantitative structure-permeability relationship (QSPR) models were developed using partial least squares, stepwise multiple linear regression, support vector machine and artificial neural network methodologies. A high degree of structural diversity of the analysed IRs/α-ARs ligands and CNS drugs provides wide applicability domain of the QSPR models for estimation of blood-brain barrier penetration of the related compounds.

Biomass properties and permeability in an immersed hollow fibre membrane bioreactor at high sludge concentrations.

PubMed

Wang, Z Z; Zsirai, T; Connery, K; Fabiyi, M; Larrea, A; Li, J; Judd, S J

2014-01-01

This study aimed to investigate the influence of biomass properties and high mixed liquor suspended solids (MLSS) concentrations on membrane permeability in a pilot-scale hollow fibre membrane bioreactor treating domestic wastewater. Auxiliary molasses solution was added to maintain system operation at constant food-to-microorganisms ratio (F/M = 0.13). Various physicochemical and biological biomass parameters were measured throughout the trial, comprising pre-thickening, thickening and post-thickening periods with reference to the sludge concentration and with aerobic biotreatment continuing throughout. Correlations between dynamic changes in biomass characteristics and membrane permeability decline as well as permeability recovery were further assessed by statistical analyses. Results showed the MLSS concentration to exert the greatest influence on sustainable membrane permeability, with a weaker correlation with particle size distribution. The strong dependence of absolute recovered permeability on wet accumulated solids (WACS) concentration, or clogging propensity, revealed clogging to deleteriously affect membrane permeability decline and recovery (from mechanical declogging and chemical cleaning), with WACS levels increasing with increasing MLSS. Evidence from the study indicated clogging may permanently reduce membrane permeability post declogging and chemical cleaning, corroborating previously reported findings.

Evaluation of Porosity and Permeability for an Oil Prospect, Offshore Vietnam by using Artificial Neural Networks

NASA Astrophysics Data System (ADS)

Bui, H. T.; Ho, L. T.; Ushijima, K.; Nur, A.

2006-12-01

Determination of porosity and permeability plays a key role either in characterization of a reservoir or in development of an oil field. Their distribution helps to predict the major faults or fractured zones that are related to high porosity area in order to reduce drilling hazards. Porosity and permeability of the rock can be determined directly from the core sample or obtained from well log data such as: sonic, density, neutron or resistivity. These input parameters depend not only on porosity (?) but also on the rock matrix, fluids contained in the rocks, clay mineral component, or geometry of pore structures. Therefore, it is not easy to estimate exactly porosity and permeability since having corrected those values by conventional well log interpretation method. In this study, the Artificial Neural Networks (ANNs) have been used to derive porosity and permeability directly from well log data for Vung Dong oil prospect, southern offshore Vietnam. Firstly, we designed a training patterns for ANNs from neutron porosity, bulk density, P-sonic, deep resistivity, shallow resistivity and MSFL log curves. Then, ANNs were trained by core samples data for porosity and permeability. Several ANNs paradigms have been tried on a basis of trial and error. The batch back- propagation algorithm was found more proficient in training porosity network meanwhile the quick propagation algorithm is more effective in the permeability network. Secondly, trained ANNs was tested and applied for real data set of some wells to calculate and reveal the distribution maps of porosity or permeability. Distributions of porosity and permeability have been correlated with seismic data interpretation to map the faults and fractured zones in the study. The ANNs showed good results of porosity and permeability distribution with high reliability, fast, accurate and low cost features. Therefore, the ANNs should be widely applied in oil and gas industry.

Geometry of the Nojima fault at Nojima-Hirabayashi, Japan - I. A simple damage structure inferred from borehole core permeability

USGS Publications Warehouse

Lockner, David A.; Tanaka, Hidemi; Ito, Hisao; Ikeda, Ryuji; Omura, Kentaro; Naka, Hisanobu

2009-01-01

The 1995 Kobe (Hyogo-ken Nanbu) earthquake, M = 7.2, ruptured the Nojima fault in southwest Japan. We have studied core samples taken from two scientific drillholes that crossed the fault zone SW of the epicentral region on Awaji Island. The shallower hole, drilled by the Geological Survey of Japan (GSJ), was started 75 m to the SE of the surface trace of the Nojima fault and crossed the fault at a depth of 624 m. A deeper hole, drilled by the National Research Institute for Earth Science and Disaster Prevention (NIED) was started 302 m to the SE of the fault and crossed fault strands below a depth of 1140 m. We have measured strength and matrix permeability of core samples taken from these two drillholes. We find a strong correlation between permeability and proximity to the fault zone shear axes. The half-width of the high permeability zone (approximately 15 to 25 m) is in good agreement with the fault zone width inferred from trapped seismic wave analysis and other evidence. The fault zone core or shear axis contains clays with permeabilities of approximately 0.1 to 1 microdarcy at 50 MPa effective confining pressure (10 to 30 microdarcy at in situ pressures). Within a few meters of the fault zone core, the rock is highly fractured but has sustained little net shear. Matrix permeability of this zone is approximately 30 to 60 microdarcy at 50 MPa effective confining pressure (300 to 1000 microdarcy at in situ pressures). Outside this damage zone, matrix permeability drops below 0.01 microdarcy. The clay-rich core material has the lowest strength with a coefficient of friction of approximately 0.55. Shear strength increases with distance from the shear axis. These permeability and strength observations reveal a simple fault zone structure with a relatively weak fine-grained core surrounded by a damage zone of fractured rock. In this case, the damage zone will act as a high-permeability conduit for vertical and horizontal flow in the plane of the fault. The fine-grained core region, however, will impede fluid flow across the fault.

Predicting capillarity of mudrocks for geological storage of CO2

NASA Astrophysics Data System (ADS)

Busch, Andreas; Amann-Hildenbrand, Alexandra

2013-04-01

Various rock types were investigated, with the main focus on the determination and prediction of the capillary breakthrough and snap-off pressure in mudrocks (e.g. shales, siltstones, mudstones). Knowledge about these two critical pressures is important for the prediction of the capillary sealing capacity of CO2 storage sites. Capillary pressure experiments, when performed on low-permeable core plugs, are difficult and time consuming. Laboratory measurements on core plugs under in-situ conditions are mostly performed using nitrogen, but also with methane and carbon dioxide. Therefore, mercury porosimetry measurements (MIP) are preferably used in the industry to determine an equivalent value for the capillary breakthrough pressure. These measurements have the advantage to be quick and cheap and only require cuttings or trim samples. When evaluating the database in detail we find that (1) MIP data plot well with the drainage breakthrough pressures determined on sample plugs, while the conversion of the system Hg/air to CO2/brine using interfacial and wettability data does not provide a uniform match, potentially caused by non fully water-wet conditions; (2) brine permeability versus capillary breakthrough pressure determined on sample plugs shows a good match and could provide a first estimate of Pc-values since permeability is easier to determine than capillary breakthrough pressures. For imbibition snap-off pressures a good correlation was found for CH4 measured on sample plugs only; (3) porosity shows a fairly good correlation with permeability for sandstone only, and with plug-derived capillary breakthrough pressures for sandstones, carbonates and evaporates. No such correlations exist for mudrocks; (4) air and brine-derived permeabilities show an excellent correlation and (5) from the data used we do not infer any direct correlations between specific surface area (SSA), mineralogy or organic carbon content with permeability or capillary pressure however were able to predict permeabilities using a more sophisticated model that relies on several of these parameters.

Skin lipid structure controls water permeability in snake molts.

PubMed

Torri, Cristian; Mangoni, Alfonso; Teta, Roberta; Fattorusso, Ernesto; Alibardi, Lorenzo; Fermani, Simona; Bonacini, Irene; Gazzano, Massimo; Burghammer, Manfred; Fabbri, Daniele; Falini, Giuseppe

2014-01-01

The role of lipids in controlling water exchange is fundamentally a matter of molecular organization. In the present study we have observed that in snake molt the water permeability drastically varies among species living in different climates and habitats. The analysis of molts from four snake species: tiger snake, Notechis scutatus, gabon viper, Bitis gabonica, rattle snake, Crotalus atrox, and grass snake, Natrix natrix, revealed correlations between the molecular composition and the structural organization of the lipid-rich mesos layer with control in water exchange as a function of temperature. It was discovered, merging data from micro-diffraction and micro-spectroscopy with those from thermal, NMR and chromatographic analyses, that this control is generated from a sophisticated structural organization that changes size and phase distribution of crystalline domains of specific lipid molecules as a function of temperature. Thus, the results of this research on four snake species suggest that in snake skins different structured lipid layers have evolved and adapted to different climates. Moreover, these lipid structures can protect, "safety", the snakes from water lost even at temperatures higher than those of their usual habitat. Copyright © 2013 Elsevier Inc. All rights reserved.

On the examination of Darcy permeability of soft fibrous porous media; New correlations

NASA Astrophysics Data System (ADS)

Zhu, Zenghao; Wang, Qiuyun; Wu, Qianhong

2017-11-01

In this presentation, we report a novel experimental approach to investigate the compression-dependent Darcy permeability of soft porous media. Especially, we are proposing new correlations that describe the change of the permeability of random fibrous porous media as a function of its compression. A special device was developed that consisted of a rectangular flow channel with adjustable gap thickness ranging from 3 mm to 20 mm. Air was forced through the thin gap filled with testing fibrous materials. By measuring the flow rate and the pressure gradient, we have successfully obtained the Darcy permeability of different fibrous porous materials at different compression ratios. Theoretical or semi-empirical models have been compared with the experimental results, indicating various degrees of disagreement. The new correlations were then proposed which fit with experimental data very well. The study presented herein provides a useful approach to evaluate the change of the permeability of fibrous porous media as a function of its compression. It will be valuable for examining fluid flow in fibrous porous media where the permeability is difficult to be measured directly. This kind of porous media widely exists in biological systems. This research was supported by the National Science Foundation under Award No. 1511096.

Permeability structure and its influence on microbial activity at off-Shimokita basin, Japan

NASA Astrophysics Data System (ADS)

Tanikawa, W.; Yamada, Y.; Sanada, Y.; Kubo, Y.; Inagaki, F.

2016-12-01

The microbial populations and the limit of microbial life are probably limited by chemical, physical, and geological conditions, such as temperature, pore water chemistry, pH, and water activity; however, the key parameters affecting growth in deep subseafloor sediments remain unclarified (Hinrichs and Inagaki 2012). IODP expedition 337 was conducted near a continental margin basin off Shimokita Peninsula, Japan to investigate the microbial activity under deep marine coalbed sediments down to 2500 mbsf. Inagaki et al. (2015) discovered that microbial abundance decreased markedly with depth (the lowest cell density of <1 cell/cm3 was recorded below 2000 mbsf), and that the coal bed layers had relatively higher cell densities. In this study, permeability was measured on core samples from IODP Expedition 337 and Expedition CK06-06 in the D/V Chikyu shakedown cruise. Permeability was measured at in-situ effective pressure condition. Permeability was calculated by the steady state flow method by keeping differential pore pressure from 0.1 to 0.8 MPa.Our results show that the permeability for core samples decreases with depth from 10-16 m2 on the seafloor to 10-20 m2 at the bottom of hole. However, permeability is highly scattered within the coal bed unit (1900 to 2000 mbsf). Permeabilities for sandstone and coal is higher than those for siltstone and shale, therefore the scatter of the permeabilities at the same unit is due to the high variation of lithology. The highest permeability was observed in coal samples and this is probably due to formation of micro cracks (cleats). Permeability estimated from the NMR logging using the empirical parameters is around two orders of magnitude higher than permeability of core samples, even though the relative permeability variation at vertical direction is quite similar between core and logging data.The higher cell density is observed in the relatively permeable formation. On the other hand, the correlation between cell density, water activity, and porosity is not clear. On the assumption that pressure gradient is constant through the depth, flow rate can be proportional to permeability of sediments. Flow rate probably restricts the availability of energy and nutrient for microorganism, therefore permeability might have influenced on the microbial activity in the coalbed basin.

Quantitative structure-permeability relationships at various pH values for acidic and basic drugs and drug-like compounds.

PubMed

Oja, M; Maran, U

2015-01-01

Absorption in gastrointestinal tract compartments varies and is largely influenced by pH. Therefore, considering pH in studies and analyses of membrane permeability provides an opportunity to gain a better understanding of the behaviour of compounds and to obtain good permeability estimates for prediction purposes. This study concentrates on relationships between the chemical structure and membrane permeability of acidic and basic drugs and drug-like compounds. The membrane permeability of 36 acidic and 61 basic compounds was measured using the parallel artificial membrane permeability assay (PAMPA) at pH 3, 5, 7.4 and 9. Descriptive and/or predictive single-parameter quantitative structure-permeability relationships were derived for all pH values. For acidic compounds, membrane permeability is mainly influenced by hydrogen bond donor properties, as revealed by models with r(2) > 0.8 for pH 3 and pH 5. For basic compounds, the best (r(2) > 0.7) structure-permeability relationships are obtained with the octanol-water distribution coefficient for pH 7.4 and pH 9, indicating the importance of partition properties. In addition to the validation set, the prediction quality of the developed models was tested with folic acid and astemizole, showing good matches between experimental and calculated membrane permeabilities at key pHs. Selected QSAR models are available at the QsarDB repository ( http://dx.doi.org/10.15152/QDB.166 ).

Correlation of Water Quality Parameters with Metal Concentrations in Permeable Pavement Infiltrate

EPA Science Inventory

EPA constructed a 4,000-m2 parking lot for research and demonstration of three permeable pavements [permeable interlocking concrete pavers (PICP), pervious concrete (PC), and porous asphalt (PA)] at the Edison Environmental Center in Edison, NJ in 2009. Infiltrate samples from e...

Structural and conformational determinants of macrocycle cell permeability.

PubMed

Over, Björn; Matsson, Pär; Tyrchan, Christian; Artursson, Per; Doak, Bradley C; Foley, Michael A; Hilgendorf, Constanze; Johnston, Stephen E; Lee, Maurice D; Lewis, Richard J; McCarren, Patrick; Muncipinto, Giovanni; Norinder, Ulf; Perry, Matthew W D; Duvall, Jeremy R; Kihlberg, Jan

2016-12-01

Macrocycles are of increasing interest as chemical probes and drugs for intractable targets like protein-protein interactions, but the determinants of their cell permeability and oral absorption are poorly understood. To enable rational design of cell-permeable macrocycles, we generated an extensive data set under consistent experimental conditions for more than 200 non-peptidic, de novo-designed macrocycles from the Broad Institute's diversity-oriented screening collection. This revealed how specific functional groups, substituents and molecular properties impact cell permeability. Analysis of energy-minimized structures for stereo- and regioisomeric sets provided fundamental insight into how dynamic, intramolecular interactions in the 3D conformations of macrocycles may be linked to physicochemical properties and permeability. Combined use of quantitative structure-permeability modeling and the procedure for conformational analysis now, for the first time, provides chemists with a rational approach to design cell-permeable non-peptidic macrocycles with potential for oral absorption.

Progress on Discrete Fracture Network models with implications on the predictions of permeability and flow channeling structure

NASA Astrophysics Data System (ADS)

Darcel, C.; Davy, P.; Le Goc, R.; Maillot, J.; Selroos, J. O.

2017-12-01

We present progress on Discrete Fracture Network (DFN) flow modeling, including realistic advanced DFN spatial structures and local fracture transmissivity properties, through an application to the Forsmark site in Sweden. DFN models are a framework to combine fracture datasets from different sources and scales and to interpolate them in combining statistical distributions and stereological relations. The resulting DFN upscaling function - size density distribution - is a model component key to extrapolating fracture size densities between data gaps, from borehole core up to site scale. Another important feature of DFN models lays in the spatial correlations between fractures, with still unevaluated consequences on flow predictions. Indeed, although common Poisson (i.e. spatially random) models are widely used, they do not reflect these geological evidences for more complex structures. To model them, we define a DFN growth process from kinematic rules for nucleation, growth and stopping conditions. It mimics in a simplified way the geological fracturing processes and produces DFN characteristics -both upscaling function and spatial correlations- fully consistent with field observations. DFN structures are first compared for constant transmissivities. Flow simulations for the kinematic and equivalent Poisson DFN models show striking differences: with the kinematic DFN, connectivity and permeability are significantly smaller, down to a difference of one order of magnitude, and flow is much more channelized. Further flow analyses are performed with more realistic transmissivity distribution conditions (sealed parts, relations to fracture sizes, orientations and in-situ stress field). The relative importance of the overall DFN structure in the final flow predictions is discussed.

Water permeability is a measure of severity in acute appendicitis.

PubMed

Pini, Nicola; Pfeifle, Viktoria A; Kym, Urs; Keck, Simone; Galati, Virginie; Holland-Cunz, Stefan; Gros, Stephanie J

2017-12-01

Acute appendicitis is the most common indication for pediatric abdominal emergency surgery. Determination of the severity of appendicitis on clinical grounds is challenging. Complicated appendicitis presenting with perforation, abscess or diffuse peritonitis is not uncommon. The question remains why and when acute appendicitis progresses to perforation. The aim of this study was to assess the impact of water permeability on the severity of appendicitis. We show that AQP1 expression and water permeability in appendicitis correlate with the stage of inflammation and systemic infection parameters, leading eventually to perforation of the appendix. AQP1 is also expressed within the ganglia of the enteric nervous system and ganglia count increases with inflammation. Severity of appendicitis can be correlated with water permeability measured by AQP1 protein expression and increase of ganglia count in a progressive manner. This introduces the question if regulation of water permeability can present novel curative or ameliorating therapeutic options.

Comparison of Pore Fractal Characteristics Between Marine and Continental Shales

NASA Astrophysics Data System (ADS)

Liu, Jun; Yao, Yanbin; Liu, Dameng; Cai, Yidong; Cai, Jianchao

Fractal characterization offers a quantitative evaluation on the heterogeneity of pore structure which greatly affects gas adsorption and transportation in shales. To compare the fractal characteristics between marine and continental shales, nine samples from the Lower Silurian Longmaxi formation in the Sichuan basin and nine from the Middle Jurassic Dameigou formation in the Qaidam basin were collected. Reservoir properties and fractal dimensions were characterized for all the collected samples. In this study, fractal dimensions were originated from the Frenkel-Halsey-Hill (FHH) model with N2 adsorption data. Compared to continental shale, marine shale has greater values of quartz content, porosity, specific surface area and total pore volume but lower level of clay minerals content, permeability, average pore diameter and methane adsorption capacity. The quartz in marine shale is mostly associated with biogenic origin, while that in continental shale is mainly due to terrigenous debris. The N2 adsorption-desorption isotherms exhibit that marine shale has fewer inkbottle-shaped pores but more plate-like and slit-shaped pores than continental shale. Two fractal dimensions (D1 and D2) were obtained at P/Po of 0-0.5 and 0.5-1. The dimension D2 is commonly greater than D1, suggesting that larger pores (diameter >˜ 4nm) have more complex structures than small pores (diameter <˜ 4nm). The fractal dimensions (both D1 and D2) positively correlate to clay minerals content, specific surface area and methane adsorption capacity, but have negative relationships with porosity, permeability and average pore diameter. The fractal dimensions increase proportionally with the increasing quartz content in marine shale but have no obvious correlation with that in continental shale. The dimension D1 is correlative to the TOC content and permeability of marine shale at a similar degree with dimension D2, while the dimension D1 is more sensitive to those of continental shale than dimension D2. Compared with dimension D2, for two shales, dimension D1 is better associated with the content of clay minerals but has worse correlations with the specific surface area and average pore diameter.

Correlation of Traditional Water Quality Parameters with Metal Concentrations in Permeable Pavement Infiltrate

EPA Science Inventory

EPA constructed a 4,000-m2 parking lot for research and demonstration of three permeable pavements [permeable interlocking concrete pavers (PICP), pervious concrete (PC), and porous asphalt (PA)] at the Edison Environmental Center in Edison, NJ in 2009. Infiltrate samples from e...

Estimation of hydraulic permeability considering the micro morphology of rocks of the borehole YAXCOPOIL-1 (Impact crater Chicxulub, Mexico)

NASA Astrophysics Data System (ADS)

Mayr, S. I.; Burkhardt, H.; Popov, Yu.; Wittmann, A.

2008-04-01

Internal surface, formation factor, Nuclear Magnetic Resonance (NMR)-T2 relaxation times and pore radius distributions were measured on representative core samples for the estimation of hydraulic permeability. Permeability is estimated using various versions of the classic Kozeny-Carman-equation (K-C) and a further development of K-C, the fractal PaRiS-model, taking into account the internal surface. In addition to grain and pore size distribution, directly connected to permeability, internal surface reflects the internal structure (“micro morphology”). Lithologies could be grouped with respect to differences in internal surface. Most melt rich impact breccia lithologies exhibit large internal surfaces, while Tertiary post-impact sediments and Cretaceous lithologies in displaced megablocks display smaller internal surfaces. Investigations with scanning electron microscopy confirm the correlation between internal surface and micro morphology. In addition to different versions of K-C, estimations by means of NMR, pore radius distributions and some gas permeability measurements serve for cross-checking and calibration. In general, the different estimations from the independent methods and the measurements are in satisfactory accordance. For Tertiary limestones and Suevites bulk with very high porosities (up to 35%) permeabilites between 10-14 and 10-16 m2 are found, whereas in lower Suevite, Cretaceous anhydrites and dolomites, bulk permeabilites are between 10-15 and 10-23 m2.

Experimental techniques and computational methods toward the estimation of the effective two-phase flow coefficients and multi-scale heterogeneities of soils

NASA Astrophysics Data System (ADS)

Tsakiroglou, C. D.; Aggelopoulos, C. A.; Sygouni, V.

2009-04-01

A hierarchical, network-type, dynamic simulator of the immiscible displacement of water by oil in heterogeneous porous media is developed to simulate the rate-controlled displacement of two fluids at the soil column scale. A cubic network is constructed, where each node is assigned a permeability which is chosen randomly from a distribution function. The intensity of heterogeneities is quantified by the width of the permeability distribution function. The capillary pressure at each node is calculated by combining a generalized Leverett J-function with a Corey type model. Information about the heterogeneity of soils at the pore network scale is obtained by combining mercury intrusion porosimetry (MIP) data with back-scattered scanning electron microscope (BSEM) images [1]. In order to estimate the two-phase flow properties of nodes (relative permeability and capillary pressure functions, permeability distribution function) immiscible and miscible displacement experiments are performed on undisturbed soil columns. The transient responses of measured variables (pressure drop, fluid saturation averaged over five successive segments, solute concentration averaged over three cross-sections) are fitted with models accounting for the preferential flow paths at the micro- (multi-region model) and macro-scale (multi flowpath model) because of multi-scale heterogeneities [2,3]. Simulating the immiscible displacement of water by oil (drainage) in a large netork, at each time step, the fluid saturation and pressure of each node are calculated formulating mass balances at each node, accounting for capillary, viscous and gravity forces, and solving the system of coupled equations. At each iteration of the algorithm, the pressure drop is so selected that the total flow rate of the injected fluid is kept constant. The dynamic large-scale network simulator is used (1) to examine the sensitivity of the transient responses of the axial distribution of fluid saturation and total pressure drop across the network to the permeability distribution function, spatial correlations of permeability, and capillary number, and (2) to estimate the effective (up-scaled) relative permeability functions at the soil column scale. In an attempt to clarify potential effects of the permeability distribution and spatial permeability correlations on the transient responses of the pressure drop across a soil column, signal analysis with wavelets is performed [4] on experimental and simulated results. The transient variation of signal energy and frequency of pressure drop fluctuations at the wavelet domain are correlated with macroscopic properties such as the effective water and oil relative permeabilities of the porous medium, and microscopic properties such as the variation of the permeability distribution of oil-occupied nodes. Toward the solution of the inverse problem, a general procedure is suggested to identify macro-heterogeneities from the fast analysis of pressure drop signals. References 1. Tsakiroglou, C.D. and M.A. Ioannidis, "Dual porosity modeling of the pore structure and transport properties of a contaminated soil", Eur. J. Soil Sci., 59, 744-761 (2008). 2. Aggelopoulos, C.A., and C.D. Tsakiroglou, "Quantifying the Soil Heterogeneity from Solute Dispersion Experiments", Geoderma, 146, 412-424 (2008). 3. Aggelopoulos, C.A., and C.D. Tsakiroglou, "A multi-flow path approach to model immiscible displacement in undisturbed heterogeneous soil columns", J. Contam. Hydrol., in press (2009). 4. Sygouni, V., C.D. Tsakiroglou, and A.C. Payatakes, "Using wavelets to characterize the wettability of porous materials", Phys. Rev. E, 76, 056304 (2007).

Evaluations of imidazolium ionic liquids as novel skin permeation enhancers for drug transdermal delivery.

PubMed

Zhang, Ding; Wang, Huai-Ji; Cui, Xiu-Ming; Wang, Cheng-Xiao

2017-06-01

In this work, imidazolium ionic liquids (imidazolium ILs) were employed as the novel chemical permeation enhancers (CPEs) and their performances and mechanisms of action were deeply investigated. Testosterone was used as a model drug to investigate the transdermal delivery enhancement of twenty imdidazolium ILs. The results suggested that the promotion activity connected to the structure and composition of the ILs. The quantitative structure-activity relationship (QSAR) model revealed a good linearity between the electronic properties of ILs and their enhancements. Furthermore, the transepidermal water loss (TEWL) and scanning laser confocal microscope (CLSM) examinations showed the strong improvement of ILs on skin barrier permeability, which were well correlated with the drug penetration profiles. The total reflection-Fourier transform infrared spectroscopy (ATR-FTIR) and atomic force microscope (AFM) evaluations of skins indicated that the ILs can disrupt the regular and compact arrangements of the corneocytes, change the surface properties of stratum corneum, and make the skin structure more permeable. Our work demonstrated the significant skin permeation promotion profiles of the imidazolium ILs, which are of great potential in transdermal drug delivery systems.

Unified model for the corneal permeability of related and diverse compounds with respect to their physicochemical properties.

PubMed

Yoshida, F; Topliss, J G

1996-08-01

Corneal permeability data taken from the literature were analyzed for possible quantitative relationships with physicochemical properties. Although a parabolic relationship was obtained with good correlation between lipophilicity, as expressed by the 1-octanol-water partition coefficients, log Poctanol (or the distribution coefficients, log D for ionizable compounds), and the permeability in individual analyses of compound classes such as beta-adrenoceptor blockers and steroids, the correlation was reduced when taken together. However, delta log P (i.e., log Poctanol-log Palkane) correlated inversely with the combined permeability data for beta-blockers and steroids and played a key role as a unifying variable. To a lesser extent, lipophilicity itself also contributes positively to corneal permeation. Even with the addition of miscellaneous compounds such as methanol and ibuprofen, the delta log P and lipophilicity terms were still significant. However, small molecules were likely to be underestimated, which is consistent with penetration via another pathway besides that governed by delta log P and lipophilicity.

Chemical surface, diffusional, electrical and elastic characterizations of two different dense regenerated cellulose membranes.

PubMed

Vázquez, M I; de Lara, R; Benavente, J

2008-12-15

A comparison of NaCl transport across two dense cellulosic membranes from different suppliers is presented. Hydraulic and diffusional permeabilities were determined from volume flow-applied pressure and concentration-time relationships, while cation transport number and membrane conductivity were determined from electromotrice force and impedance spectroscopy measurements, respectively. Chemical surface differences between both membranes are correlated to transport parameters and morphology, but differences in elastic properties of both membranes might also be considered in order to get a more complete picture of membrane behaviors and to obtain structural-transport parameters correlations.

Magnetic and Dielectric Property Studies in Fe- and NiFe-Based Polymer Nanocomposites

NASA Astrophysics Data System (ADS)

Sharma, Himani; Jain, Shubham; Raj, Pulugurtha Markondeya; Murali, K. P.; Tummala, Rao

2015-10-01

Metal-polymer composites were investigated for their microwave properties in the frequency range of 30-1000 MHz to assess their application as inductor cores and electromagnetic isolation shield structures. NiFe and Fe nanoparticles were dispersed in epoxy as nanocomposites, in different volume fractions. The permittivity, permeability, and loss tangents of the composites were measured with an impedance analyzer and correlated with the magnetic properties of the particle such as saturation magnetization and field anisotropy. Fe-epoxy showed lower magnetic permeability but improved frequency stability, compared to the NiFe-epoxy composites of the same volume loading. This is attributed to the differences in nanoparticle's structure such as effective metal core size and particle-porosity distribution in the polymer matrix. The dielectric properties of the nanocomposites were also characterized from 30 MHz to 1000 MHz. The instabilities in the dielectric constant and loss tangent were related to the interfacial polarization relaxation of the particles and the dielectric relaxation of the surface oxides.

PALS, MIR and UV-vis-NIR spectroscopy studies of pHEMA hydrogel, silicon- and fluoro-containing contact lens materials

NASA Astrophysics Data System (ADS)

Filipecka, Katarzyna; Budaj, Mariusz; Chamerski, Kordian; Miedziński, Rafał; Sitarz, Maciej; Miskowiak, Bogdan; Makowska-Janusik, Małgorzata; Filipecki, Jacek

2017-11-01

Studies on polymeric materials used in contactology for manufacturing of contact lenses are presented in the paper. Different types of brand new contact lenses were investigated: hydrogel, silicone-hydrogel and rigid gas permeable. Positron annihilation lifetime spectroscopy (PALS) was used to characterize geometrical sizes and fraction of the free volume holes in the investigated samples. Measurements reveal significant differences between the materials. Namely differences in size and fraction of free volume were observed. These changes are strongly correlated with oxygen permeability in contact lenses. Middle infrared (MIR) spectroscopy was carried out in order to investigate the internal structure of materials. Furthermore, UV-vis-NIR studies were performed in order to determine the transmittance properties of contact lenses.

Pneumatic testing in 45-degree-inclined boreholes in ash-flow tuff near Superior, Arizona

USGS Publications Warehouse

LeCain, G.D.

1995-01-01

Matrix permeability values determined by single-hole pneumatic testing in nonfractured ash-flow tuff ranged from 5.1 to 20.3 * 1046 m2 (meters squared), depending on the gas-injection rate and analysis method used. Results from the single-hole tests showed several significant correlations between permeability and injection rate and between permeability and test order. Fracture permeability values determined by cross-hole pneumatic testing in fractured ash-flow tuff ranged from 0.81 to 3.49 * 1044 m2, depending on injection rate and analysis method used. Results from the cross-hole tests monitor intervals showed no significant correlation between permeability and injection rate; however, results from the injection interval showed a significant correlation between injection rate and permeability. Porosity estimates from the 'cross-hole testing range from 0.8 to 2.0 percent. The maximum temperature change associated with the pneumatic testing was 1.2'(2 measured in the injection interval during cross-hole testing. The maximum temperature change in the guard and monitor intervals was O.Ip C. The maximum error introduced into the permeability values due to temperature fluctuations is approximately 4 percent. Data from temperature monitoring in the borehole indicated a positive correlation between the temperature decrease in the injection interval during recovery testing and the gas-injection rate. The thermocouple psychrometers indicated that water vapor was condensing in the boreholes during testing. The psychrometers in the guard and monitor intervals detected the drier injected gas as an increase in the dry bulb reading. The relative humidity in the test intervals was always higher than the upper measurement limit of the psychrometers. Although the installation of the packer system may have altered the water balance of the borehole, the gas-injection testing resulted in minimal or no changes in the borehole relative humidity.

Relationship between pore geometric characteristics and SIP/NMR parameters observed for mudstones

NASA Astrophysics Data System (ADS)

Robinson, J.; Slater, L. D.; Keating, K.; Parker, B. L.; Robinson, T.

2017-12-01

The reliable estimation of permeability remains one of the most challenging problems in hydrogeological characterization. Cost effective, non-invasive geophysical methods such as spectral induced polarization (SIP) and nuclear magnetic resonance (NMR) offer an alternative to traditional sampling methods as they are sensitive to the mineral surfaces and pore spaces that control permeability. We performed extensive physical characterization, SIP and NMR geophysical measurements on fractured rock cores extracted from a mudstone site in an effort to compare 1) the pore size characterization determined from traditional and geophysical methods and 2) the performance of permeability models based on these methods. We focus on two physical characterizations that are well-correlated with hydraulic properties: the pore volume normalized surface area (Spor) and an interconnected pore diameter (Λ). We find the SIP polarization magnitude and relaxation time are better correlated with Spor than Λ, the best correlation of these SIP measures for our sample dataset was found with Spor divided by the electrical formation factor (F). NMR parameters are, similarly, better correlated with Spor than Λ. We implement previously proposed mechanistic and empirical permeability models using SIP and NMR parameters. A sandstone-calibrated SIP model using a polarization magnitude does not perform well while a SIP model using a mean relaxation time performs better in part by more sufficiently accounting for the effects of fluid chemistry. A sandstone-calibrated NMR permeability model using an average measure of the relaxation time does not perform well, presumably due to small pore sizes which are either not connected or contain water of limited mobility. An NMR model based on the laboratory determined portions of the bound versus mobile portions of the relaxation distribution performed reasonably well. While limitations exist, there are many opportunities to use geophysical data to predict permeability in mudstone formations.

Compaction trends of full stiffness tensor and fluid permeability in artificial shales

NASA Astrophysics Data System (ADS)

Beloborodov, Roman; Pervukhina, Marina; Lebedev, Maxim

2018-03-01

We present a methodology and describe a set-up that allows simultaneous acquisition of all five elastic coefficients of a transversely isotropic (TI) medium and its permeability in the direction parallel to the symmetry axis during mechanical compaction experiments. We apply the approach to synthetic shale samples and investigate the role of composition and applied stress on their elastic and transport properties. Compaction trends for the five elastic coefficients that fully characterize TI anisotropy of artificial shales are obtained for a porosity range from 40 per cent to 15 per cent. A linear increase of elastic coefficients with decreasing porosity is observed. The permeability acquired with the pressure-oscillation technique exhibits exponential decrease with decreasing porosity. Strong correlations are observed between an axial fluid permeability and seismic attributes, namely, VP/VS ratio and acoustic impedance, measured in the same direction. These correlations might be used to derive permeability of shales from seismic data given that their mineralogical composition is known.

Influence of fiber packing structure on permeability

NASA Technical Reports Server (NTRS)

Cai, Zhong; Berdichevsky, Alexander L.

1993-01-01

The study on the permeability of an aligned fiber bundle is the key building block in modeling the permeability of advanced woven and braided preforms. Available results on the permeability of fiber bundles in the literature show that a substantial difference exists between numerical and analytical calculations on idealized fiber packing structures, such as square and hexagonal packing, and experimental measurements on practical fiber bundles. The present study focuses on the variation of the permeability of a fiber bundle under practical process conditions. Fiber bundles are considered as containing openings and fiber clusters within the bundle. Numerical simulations on the influence of various openings on the permeability were conducted. Idealized packing structures are used, but with introduced openings distributed in different patterns. Both longitudinal and transverse flow are considered. The results show that openings within the fiber bundle have substantial effect on the permeability. In the longitudinal flow case, the openings become the dominant flow path. In the transverse flow case, the fiber clusters reduce the gap sizes among fibers. Therefore the permeability is greatly influenced by these openings and clusters, respectively. In addition to the porosity or fiber volume fraction, which is commonly used in the permeability expression, another fiber bundle status parameter, the ultimate fiber volume fraction, is introduced to capture the disturbance within a fiber bundle.

Internal fracture heterogeneity in discrete fracture network modelling: Effect of correlation length and textures with connected and disconnected permeability field

NASA Astrophysics Data System (ADS)

Frampton, A.; Hyman, J.; Zou, L.

2017-12-01

Analysing flow and transport in sparsely fractured media is important for understanding how crystalline bedrock environments function as barriers to transport of contaminants, with important applications towards subsurface repositories for storage of spent nuclear fuel. Crystalline bedrocks are particularly favourable due to their geological stability, low advective flow and strong hydrogeochemical retention properties, which can delay transport of radionuclides, allowing decay to limit release to the biosphere. There are however many challenges involved in quantifying and modelling subsurface flow and transport in fractured media, largely due to geological complexity and heterogeneity, where the interplay between advective and dispersive flow strongly impacts both inert and reactive transport. A key to modelling transport in a Lagrangian framework involves quantifying pathway travel times and the hydrodynamic control of retention, and both these quantities strongly depend on heterogeneity of the fracture network at different scales. In this contribution, we present recent analysis of flow and transport considering fracture networks with single-fracture heterogeneity described by different multivariate normal distributions. A coherent triad of fields with identical correlation length and variance are created but which greatly differ in structure, corresponding to textures with well-connected low, medium and high permeability structures. Through numerical modelling of multiple scales in a stochastic setting we quantify the relative impact of texture type and correlation length against network topological measures, and identify key thresholds for cases where flow dispersion is controlled by single-fracture heterogeneity versus network-scale heterogeneity. This is achieved by using a recently developed novel numerical discrete fracture network model. Furthermore, we highlight enhanced flow channelling for cases where correlation structure continues across intersections in a network, and discuss application to realistic fracture networks using field data of sparsely fractured crystalline rock from the Swedish candidate repository site for spent nuclear fuel.

Nanoscale simulation of shale transport properties using the lattice Boltzmann method: Permeability and diffusivity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, Li; Zhang, Lei; Kang, Qinjun

Here, porous structures of shales are reconstructed using the markov chain monte carlo (MCMC) method based on scanning electron microscopy (SEM) images of shale samples from Sichuan Basin, China. Characterization analysis of the reconstructed shales is performed, including porosity, pore size distribution, specific surface area and pore connectivity. The lattice Boltzmann method (LBM) is adopted to simulate fluid flow and Knudsen diffusion within the reconstructed shales. Simulation results reveal that the tortuosity of the shales is much higher than that commonly employed in the Bruggeman equation, and such high tortuosity leads to extremely low intrinsic permeability. Correction of the intrinsicmore » permeability is performed based on the dusty gas model (DGM) by considering the contribution of Knudsen diffusion to the total flow flux, resulting in apparent permeability. The correction factor over a range of Knudsen number and pressure is estimated and compared with empirical correlations in the literature. We find that for the wide pressure range investigated, the correction factor is always greater than 1, indicating Knudsen diffusion always plays a role on shale gas transport mechanisms in the reconstructed shales. Specifically, we found that most of the values of correction factor fall in the slip and transition regime, with no Darcy flow regime observed.« less

Nanoscale simulation of shale transport properties using the lattice Boltzmann method: Permeability and diffusivity

DOE PAGES

Chen, Li; Zhang, Lei; Kang, Qinjun; ...

2015-01-28

Here, porous structures of shales are reconstructed using the markov chain monte carlo (MCMC) method based on scanning electron microscopy (SEM) images of shale samples from Sichuan Basin, China. Characterization analysis of the reconstructed shales is performed, including porosity, pore size distribution, specific surface area and pore connectivity. The lattice Boltzmann method (LBM) is adopted to simulate fluid flow and Knudsen diffusion within the reconstructed shales. Simulation results reveal that the tortuosity of the shales is much higher than that commonly employed in the Bruggeman equation, and such high tortuosity leads to extremely low intrinsic permeability. Correction of the intrinsicmore » permeability is performed based on the dusty gas model (DGM) by considering the contribution of Knudsen diffusion to the total flow flux, resulting in apparent permeability. The correction factor over a range of Knudsen number and pressure is estimated and compared with empirical correlations in the literature. We find that for the wide pressure range investigated, the correction factor is always greater than 1, indicating Knudsen diffusion always plays a role on shale gas transport mechanisms in the reconstructed shales. Specifically, we found that most of the values of correction factor fall in the slip and transition regime, with no Darcy flow regime observed.« less

Nanoscale simulation of shale transport properties using the lattice Boltzmann method: permeability and diffusivity

PubMed Central

Chen, Li; Zhang, Lei; Kang, Qinjun; Viswanathan, Hari S.; Yao, Jun; Tao, Wenquan

2015-01-01

Porous structures of shales are reconstructed using the markov chain monte carlo (MCMC) method based on scanning electron microscopy (SEM) images of shale samples from Sichuan Basin, China. Characterization analysis of the reconstructed shales is performed, including porosity, pore size distribution, specific surface area and pore connectivity. The lattice Boltzmann method (LBM) is adopted to simulate fluid flow and Knudsen diffusion within the reconstructed shales. Simulation results reveal that the tortuosity of the shales is much higher than that commonly employed in the Bruggeman equation, and such high tortuosity leads to extremely low intrinsic permeability. Correction of the intrinsic permeability is performed based on the dusty gas model (DGM) by considering the contribution of Knudsen diffusion to the total flow flux, resulting in apparent permeability. The correction factor over a range of Knudsen number and pressure is estimated and compared with empirical correlations in the literature. For the wide pressure range investigated, the correction factor is always greater than 1, indicating Knudsen diffusion always plays a role on shale gas transport mechanisms in the reconstructed shales. Specifically, we found that most of the values of correction factor fall in the slip and transition regime, with no Darcy flow regime observed. PMID:25627247

Preliminary study of soil permeability properties using principal component analysis

NASA Astrophysics Data System (ADS)

Yulianti, M.; Sudriani, Y.; Rustini, H. A.

2018-02-01

Soil permeability measurement is undoubtedly important in carrying out soil-water research such as rainfall-runoff modelling, irrigation water distribution systems, etc. It is also known that acquiring reliable soil permeability data is rather laborious, time-consuming, and costly. Therefore, it is desirable to develop the prediction model. Several studies of empirical equations for predicting permeability have been undertaken by many researchers. These studies derived the models from areas which soil characteristics are different from Indonesian soil, which suggest a possibility that these permeability models are site-specific. The purpose of this study is to identify which soil parameters correspond strongly to soil permeability and propose a preliminary model for permeability prediction. Principal component analysis (PCA) was applied to 16 parameters analysed from 37 sites consist of 91 samples obtained from Batanghari Watershed. Findings indicated five variables that have strong correlation with soil permeability, and we recommend a preliminary permeability model, which is potential for further development.

Apolipoprotein L1 confers pH-switchable ion permeability to phospholipid vesicles.

PubMed

Bruno, Jonathan; Pozzi, Nicola; Oliva, Jonathan; Edwards, John C

2017-11-03

Apolipoprotein L1 (ApoL1) is a human serum protein conferring resistance to African trypanosomes, and certain ApoL1 variants increase susceptibility to some progressive kidney diseases. ApoL1 has been hypothesized to function like a pore-forming colicin and has been reported to have permeability effects on both intracellular and plasma membranes. Here, to gain insight into how ApoL1 may function in vivo , we used vesicle-based ion permeability, direct membrane association, and intrinsic fluorescence to study the activities of purified recombinant ApoL1. We found that ApoL1 confers chloride-selective permeability to preformed phospholipid vesicles and that this selectivity is strongly pH-sensitive, with maximal activity at pH 5 and little activity above pH 7. When ApoL1 and lipid were allowed to interact at low pH and were then brought to neutral pH, chloride permeability was suppressed, and potassium permeability was activated. Both chloride and potassium permeability linearly correlated with the mass of ApoL1 in the reaction mixture, and both exhibited lipid selectivity, requiring the presence of negatively charged lipids for activity. Potassium, but not chloride, permease activity required the presence of calcium ions in both the association and activation steps. Direct assessment of ApoL1-lipid associations confirmed that ApoL1 stably associates with phospholipid vesicles, requiring low pH and the presence of negatively charged phospholipids for maximal binding. Intrinsic fluorescence of ApoL1 supported the presence of a significant structural transition when ApoL1 is mixed with lipids at low pH. This pH-switchable ion-selective permeability may explain the different effects of ApoL1 reported in intracellular and plasma membrane environments. © 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

Phase behaviour of disordered proteins underlying low density and high permeability of liquid organelles

NASA Astrophysics Data System (ADS)

Wei, Ming-Tzo; Elbaum-Garfinkle, Shana; Holehouse, Alex S.; Chen, Carlos Chih-Hsiung; Feric, Marina; Arnold, Craig B.; Priestley, Rodney D.; Pappu, Rohit V.; Brangwynne, Clifford P.

2017-11-01

Many intracellular membraneless organelles form via phase separation of intrinsically disordered proteins (IDPs) or regions (IDRs). These include the Caenorhabditis elegans protein LAF-1, which forms P granule-like droplets in vitro. However, the role of protein disorder in phase separation and the macromolecular organization within droplets remain elusive. Here, we utilize a novel technique, ultrafast-scanning fluorescence correlation spectroscopy, to measure the molecular interactions and full coexistence curves (binodals), which quantify the protein concentration within LAF-1 droplets. The binodals of LAF-1 and its IDR display a number of unusual features, including 'high concentration' binodal arms that correspond to remarkably dilute droplets. We find that LAF-1 and other in vitro and intracellular droplets are characterized by an effective mesh size of ∼3-8 nm, which determines the size scale at which droplet properties impact molecular diffusion and permeability. These findings reveal how specific IDPs can phase separate to form permeable, low-density (semi-dilute) liquids, whose structural features are likely to strongly impact biological function.

Geostatistical analysis of regional hydraulic conductivity variations in the Snake River Plain aquifer, eastern Idaho

USGS Publications Warehouse

Welhan, J.A.; Reed, M.F.

1997-01-01

The regional spatial correlation structure of bulk horizontal hydraulic conductivity (Kb) estimated from published transmissivity data from 79 open boreholes in the fractured basalt aquifer of the eastern Snake River Plain was analyzed with geostatistical methods. The two-dimensional spatial correlation structure of In Kb shows a pronounced 4:1 range anisotropy, with a maximum correlation range in the north-northwest- south-southeast direction of about 6 km. The maximum variogram range of In Kb is similar to the mean length of flow groups exposed at the surface. The In Kb range anisotropy is similar to the mean width/length ratio of late Quaternary and Holocene basalt lava flows and the orientations of the major volcanic structural features on the eastern Snake River Plain. The similarity between In Kb correlation scales and basalt flow dimensions and between basalt flow orientations and correlation range anisotropy suggests that the spatial distribution of zones of high hydraulic conductivity may be controlled by the lateral dimensions, spatial distribution, and interconnection between highly permeable zones which are known to occur between lava flows within flow groups. If hydraulic conductivity and lithology are eventually shown to be cross correlative in this geologic setting, it may be possible to stochastically simulate hydraulic conductivity distributions, which are conditional on a knowledge of volcanic stratigraphy.

Influence of chain ordering on the selectivity of dipalmitoylphosphatidylcholine bilayer membranes for permeant size and shape.

PubMed Central

Xiang, T X; Anderson, B D

1998-01-01

The effects of lipid chain packing and permeant size and shape on permeability across lipid bilayers have been investigated in gel and liquid crystalline dipalmitoylphosphatidylcholine (DPPC) bilayers by a combined NMR line-broadening/dynamic light scattering method using seven short-chain monocarboxylic acids (formic acid, acetic acid, propionic acid, butyric acid, valeric acid, isovaleric acid, and trimethylacetic acid) as permeants. The experimental permeability coefficients are compared with the predictions of a bulk solubility diffusion model in which the bilayer membrane is represented as a slab of bulk hexadecane. Deviations of the observed permeability coefficients (Pm) from the values predicted from solubility diffusion theory (Po) lead to the determination of a correction factor, the permeability decrement f (= Pm/Po), to account for the effects of chain ordering. The natural logarithm of f has been found to correlate linearly with the inverse of the bilayer free surface area with slopes of 25 +/- 2, 36 +/- 3, 45 +/- 8, 32 +/- 12, 33 +/- 4, 49 +/- 12, and 75 +/- 6 A2 for formic acid, acetic acid, propionic acid, butyric acid, valeric acid, isovaleric acid, and trimethylacetic acid, respectively. The slope, which measures the sensitivity of the permeability coefficient of a given permeant to bilayer chain packing, exhibits an excellent linear correlation (r = 0.94) with the minimum cross-sectional area of the permeant and a poor correlation (r = 0.59) with molecular volume, suggesting that in the bilayer interior the permeants prefer to move with their long principal axis along the bilayer normal. Based on these studies, a permeability model combining the effects of bilayer chain packing and permeant size and shape on permeability across lipid membranes is developed. PMID:9826590

Permeability of nanonet structures constructed on the basis of carbon tubes

NASA Astrophysics Data System (ADS)

Bubenchikov, M. A.; Nikipelova, T. I.; Tsyrenova, V. B.; Chelnokova, A. S.

2017-11-01

An approximate integration of a potential of paired molecular interactions over the circumferential coordinate is used to find the potential of the interaction between a molecule and an infinite carbon nanotube (CNT). Based on the obtained energy of interaction between the tube and the molecules, local effective radii of the investigated carbon structures with respect to the molecules of the separated gas mixture are found. This makes it possible to calculate permeability of a single-layer, along with a two-layer CNT packing. The conducted research allowed calculating permeability of a nanonet structure as permeability of a two-layer packing of carbon nanotubes for the first time.

Effect of bedrock permeability on stream base flow mean transit time scaling relations: 1. A multiscale catchment intercomparison

NASA Astrophysics Data System (ADS)

Hale, V. Cody; McDonnell, Jeffrey J.

2016-02-01

The effect of bedrock permeability and underlying catchment boundaries on stream base flow mean transit time (MTT) and MTT scaling relationships in headwater catchments is poorly understood. Here we examine the effect of bedrock permeability on MTT and MTT scaling relations by comparing 15 nested research catchments in western Oregon; half within the HJ Andrews Experimental Forest and half at the site of the Alsea Watershed Study. The two sites share remarkably similar vegetation, topography, and climate and differ only in bedrock permeability (one poorly permeable volcanic rock and the other more permeable sandstone). We found longer MTTs in the catchments with more permeable fractured and weathered sandstone bedrock than in the catchments with tight, volcanic bedrock (on average, 6.2 versus 1.8 years, respectively). At the permeable bedrock site, 67% of the variance in MTT across catchments scales was explained by drainage area, with no significant correlation to topographic characteristics. The poorly permeable site had opposite scaling relations, where MTT showed no correlation to drainage area but the ratio of median flow path length to median flow path gradient explained 91% of the variance in MTT across seven catchment scales. Despite these differences, hydrometric analyses, including flow duration and recession analysis, and storm response analysis, show that the two sites share relatively indistinguishable hydrodynamic behavior. These results show that similar catchment forms and hydrologic regimes hide different subsurface routing, storage, and scaling behavior—a major issue if only hydrometric data are used to define hydrological similarity for assessing land use or climate change response.

Some Peculiarities of Water Transport through Plasticized Nonporous Membranes

PubMed Central

Marian, S.; Jagur-Grodzinski, J.; Kedem, O.; Vofsi, D.

1970-01-01

“Liquid” and “plasticized” solvent membranes are of interest as possible analogues of biological systems. Semipermeable homogeneous films are prepared by plasticizing polyvinylchloride with organic phosphates. Water permeability of such films is relatively high. For a material containing 70% of 1.4-dihydroxyphenyl-bis(dibutylphosphate), the diffusion coefficient of water at room temperature was estimated to be about 1 × 10-6 cm2/sec. Conditioning of a plasticized membrane, under the osmotic gradient of solution of sodium nitrate, leads to profound changes in its morphology and to a drastic increase of its water permeability. The induced changes are reversible to a large extent. Their reversibility in various solutions may be correlated with the respective differences in permselectivity. The structure of expanded membranes and the mechanism of changes taking place under the osmotic gradients are discussed. ImagesFigure 2 PMID:5496907

Use of principal-component, correlation, and stepwise multiple-regression analyses to investigate selected physical and hydraulic properties of carbonate-rock aquifers

USGS Publications Warehouse

Brown, C. Erwin

1993-01-01

Correlation analysis in conjunction with principal-component and multiple-regression analyses were applied to laboratory chemical and petrographic data to assess the usefulness of these techniques in evaluating selected physical and hydraulic properties of carbonate-rock aquifers in central Pennsylvania. Correlation and principal-component analyses were used to establish relations and associations among variables, to determine dimensions of property variation of samples, and to filter the variables containing similar information. Principal-component and correlation analyses showed that porosity is related to other measured variables and that permeability is most related to porosity and grain size. Four principal components are found to be significant in explaining the variance of data. Stepwise multiple-regression analysis was used to see how well the measured variables could predict porosity and (or) permeability for this suite of rocks. The variation in permeability and porosity is not totally predicted by the other variables, but the regression is significant at the 5% significance level. ?? 1993.

Clogging in permeable concrete: A review.

PubMed

Kia, Alalea; Wong, Hong S; Cheeseman, Christopher R

2017-05-15

Permeable concrete (or "pervious concrete" in North America) is used to reduce local flooding in urban areas and is an important sustainable urban drainage system. However, permeable concrete exhibits reduction in permeability due to clogging by particulates, which severely limits service life. This paper reviews the clogging mechanism and current mitigating strategies in order to inform future research needs. The pore structure of permeable concrete and characteristics of flowing particulates influence clogging, which occurs when particles build-up and block connected porosity. Permeable concrete requires regular maintenance by vacuum sweeping and pressure washing, but the effectiveness and viability of these methods is questionable. The potential for clogging is related to the tortuosity of the connected porosity, with greater tortuosity resulting in increased potential for clogging. Research is required to develop permeable concrete that can be poured on-site, which produces a pore structure with significantly reduced tortuosity. Copyright © 2017 Elsevier Ltd. All rights reserved.

Altered Blood-Brain Barrier Permeability in Patients With Systemic Lupus Erythematosus: A Novel Imaging Approach.

PubMed

Gulati, Gaurav; Jones, Jordan T; Lee, Gregory; Altaye, Mekibib; Beebe, Dean W; Meyers-Eaton, Jamie; Wiley, Kasha; Brunner, Hermine I; DiFrancesco, Mark W

2017-02-01

To evaluate a safe, noninvasive magnetic resonance imaging (MRI) method to measure regional blood-brain barrier integrity and investigate its relationship with neurocognitive function and regional gray matter volume in juvenile-onset systemic lupus erythematosus (SLE). In this cross-sectional, case-control study, capillary permeability was measured as a marker of blood-brain barrier integrity in juvenile SLE patients and matched healthy controls, using a combination of arterial spin labeling and diffusion-weighted brain MRI. Regional gray matter volume was measured by voxel-based morphometry. Correlation analysis was done to investigate the relationship between regional capillary permeability and regional gray matter volume. Formal neurocognitive testing was completed (measuring attention, visuoconstructional ability, working memory, and psychomotor speed), and scores were regressed against regional blood-brain barrier integrity among juvenile SLE patients. Formal cognitive testing confirmed normal cognitive ability in all juvenile SLE subjects (n = 11) included in the analysis. Regional capillary permeability was negatively associated (P = 0.026) with neurocognitive performance concerning psychomotor speed in the juvenile SLE cohort. Compared with controls (n = 11), juvenile SLE patients had significantly greater capillary permeability involving Brodmann's areas 19, 28, 36, and 37 and caudate structures (P < 0.05 for all). There is imaging evidence of increased regional capillary permeability in juvenile SLE patients with normal cognitive performance using a novel noninvasive MRI technique. These blood-brain barrier outcomes appear consistent with functional neuronal network alterations and gray matter volume loss previously observed in juvenile SLE patients with overt neurocognitive deficits, supporting the notion that blood-brain barrier integrity loss precedes the loss of cognitive ability in juvenile SLE. Longitudinal studies are needed to confirm the findings of this pilot study. © 2016, American College of Rheumatology.

Developing Enhanced Blood–Brain Barrier Permeability Models: Integrating External Bio-Assay Data in QSAR Modeling

PubMed Central

Wang, Wenyi; Kim, Marlene T.; Sedykh, Alexander

2015-01-01

Purpose Experimental Blood–Brain Barrier (BBB) permeability models for drug molecules are expensive and time-consuming. As alternative methods, several traditional Quantitative Structure-Activity Relationship (QSAR) models have been developed previously. In this study, we aimed to improve the predictivity of traditional QSAR BBB permeability models by employing relevant public bio-assay data in the modeling process. Methods We compiled a BBB permeability database consisting of 439 unique compounds from various resources. The database was split into a modeling set of 341 compounds and a validation set of 98 compounds. Consensus QSAR modeling workflow was employed on the modeling set to develop various QSAR models. A five-fold cross-validation approach was used to validate the developed models, and the resulting models were used to predict the external validation set compounds. Furthermore, we used previously published membrane transporter models to generate relevant transporter profiles for target compounds. The transporter profiles were used as additional biological descriptors to develop hybrid QSAR BBB models. Results The consensus QSAR models have R2=0.638 for fivefold cross-validation and R2=0.504 for external validation. The consensus model developed by pooling chemical and transporter descriptors showed better predictivity (R2=0.646 for five-fold cross-validation and R2=0.526 for external validation). Moreover, several external bio-assays that correlate with BBB permeability were identified using our automatic profiling tool. Conclusions The BBB permeability models developed in this study can be useful for early evaluation of new compounds (e.g., new drug candidates). The combination of chemical and biological descriptors shows a promising direction to improve the current traditional QSAR models. PMID:25862462

[Effects of different planting modes on the soil permeability of sloping farmlands in purple soil area].

PubMed

Li, Jian-Xing; He, Bing-Hui; Mei, Xue-Mei; Liang, Yan-Ling; Xiong, Jian

2013-03-01

Taking bare land as the control, this paper studied the effects of different planting modes on the soil permeability of sloping farmlands in purple soil area. For the test six planting modes, the soil permeability was in the order of Eriobotrya japonica > Citrus limon > Vetiveria zizanioides hedgerows +corn >Leucaena leucocephala hedgerows + corn> Hemerocallis fulva > corn> bare land, and decreased with increasing depth. The eigenvalues of soil infiltration were in the order of initial infiltration rate> average infiltration rate> stable infiltration rate. The soil permeability had significant positive linear correlations with soil total porosity, non-capillary porosity, initial moisture content, water holding capacity, and organic matter content, and significant negative linear correlation with soil bulk density. The common empirical infiltration model could well fit the soil moisture infiltration processes under the six planting modes, while the Kostiakov equation could not.

Tunable d-Limonene Permeability in Starch-Based Nanocomposite Films Reinforced by Cellulose Nanocrystals.

PubMed

Liu, Siyuan; Li, Xiaoxi; Chen, Ling; Li, Lin; Li, Bing; Zhu, Jie

2018-01-31

In order to control d-limonene permeability, cellulose nanocrystals (CNC) were used to regulate starch-based film multiscale structures. The effect of sphere-like cellulose nanocrystal (CS) and rod-like cellulose nanocrystal (CR) on starch molecular interaction, short-range molecular conformation, crystalline structure, and micro-ordered aggregated region structure were systematically discussed. CNC aspect ratio and content were proved to be independent variables to control d-limonene permeability via film-structure regulation. New hydrogen bonding formation and increased hydroxypropyl starch (HPS) relative crystallinity could be the reason for the lower d-limonene permeability compared with tortuous path model approximation. More hydrogen bonding formation, higher HPS relative crystallinity and larger size of micro-ordered aggregated region in CS0.5 and CR2 could explain the lower d-limonene permeability than CS2 and CR0.5, respectively. This study provided new insight for the control of the flavor release from starch-based films, which favored its application in biodegradable food packaging and flavor encapsulation.

[Mechanisms of endogenous drug resistance acquisition by spontaneous chromosomal gene mutation].

PubMed

Fukuda, H; Hiramatsu, K

1997-05-01

Endogenous resistance in bacteria is caused by a change or loss of function and generally genetically recessive. However, this type of resistance acquisition are now prevalent in clinical setting. Chromosomal genes that afford endogenous resistance are the genes correlated with the target of the drug, the drug inactivating enzymes, and permeability of the molecules including the antibacterial agents. Endogenous alteration of the drug target are mediated by the spontaneous mutation of their structural gene. This mutation provides much lower affinity of the drugs for the target. Gene expression of the inactivating enzymes, such as class C beta-lactamase, is generally regulated by regulatory genes. Spontaneous mutations in the regulatory genes cause constitutive enzyme production and provides the resistant to the agent which is usually stable for such enzymes. Spontaneous mutation in the structural gene gives the enzyme extra-spectrum substrate specificity, like ESBL (Extra-Spectrum-beta-Lactamase). Expression of structural genes encoding the permeability systems are also regulated by some regulatory genes. The spontaneous mutation of the regulatory genes reduce an amount of porin protein. This mutation causes much lower influx of the drug in the cell. Spontaneous mutation in promoter region of the structural gene of efflux protein was observed. This mutation raised the gene transcription and overproduced efflux protein. This protein progresses the drug efflux from the cell.

Gluten-induced symptoms in diarrhea-predominant irritable bowel syndrome are associated with increased myosin light chain kinase activity and claudin-15 expression

PubMed Central

Wu, Richard Licheng; Vazquez-Roque, Maria; Carlson, Paula; Burton, Duane; Grover, Madhusudan; Camilleri, Michael; Turner, Jerrold R.

2016-01-01

The mechanisms underlying diarrhea-predominant irritable bowel syndrome (IBS-D) are poorly understood, but increased intestinal permeability is thought to contribute to symptoms. A recent clinical trial of gluten-free diet (GFD) demonstrated symptomatic improvement, relative to gluten-containing diet (GCD), that was associated with reduced intestinal permeability in non-celiac disease IBS-D patients. The aim of this study was to characterize intestinal epithelial tight junction composition in IBS-D before and after dietary gluten challenge. Biopsies from 27 IBS-D patients (13 GFD; 14 GCD) were examined by H&E staining and semi-quantitative immunohistochemistry for phosphorylated myosin II regulatory light chain (MLC), MLC kinase, claudin-2, claudin-8, and claudin-15. Diet-induced changes were assessed and correlated with urinary mannitol excretion (after oral administration). In the small intestine, epithelial MLC phosphorylation was increased or decreased by GCD or GFD, respectively, and this correlated with increased intestinal permeability (P < 0.03). Colonocyte expression of the paracellular Na+ channel claudin-15 was also markedly augmented following GCD challenge (P < 0.05). Conversely, colonic claudin-2 expression correlated with reduced intestinal permeability (P < 0.03). Claudin-8 expression was not affected by dietary challenge. These data show that alterations in MLC phosphorylation and claudin-15 and claudin-2 expression are associated with gluten-induced symptomatology and intestinal permeability changes in IBS-D. The results provide new insight into IBS-D mechanisms and can explain permeability responses to gluten challenge in these patients. PMID:27869798

Effect of temperature on the permeability of gas adsorbed coal under triaxial stress conditions

NASA Astrophysics Data System (ADS)

Li, Xiangchen; Yan, Xiaopeng; Kang, Yili

2018-04-01

The combined effects of gas sorption, stress and temperature play a significant role in the changing behavior of gas permeability in coal seams. The effect of temperature on nitrogen and methane permeability of naturally fractured coal is investigated. Coal permeability, P-wave velocity and axial strain were simultaneously measured under two effective stresses and six different temperatures. The results showed that the behavior of nitrogen and methane permeability presented nonmonotonic changes with increasing temperature. The variation in the P-wave velocity and axial strain showed a good correspondence with coal permeability. A higher effective stress limited the bigger deformation and caused the small change in permeability. Methane adsorption and desorption significantly influence the mechanical properties of coal and play an important role in the variations in coal permeability. The result of coal permeability during a complete stress-strain process showed that the variation in permeability is determined by the evolution of the internal structure. The increase in the temperature of the gas saturated coal causes the complex interaction between matrix swelling, matrix shrinkage and micro-fracture generation, which leads to the complex changes in coal structure and permeability. These results are helpful to understand the gas transport mechanism for exploiting coal methane by heat injection.

Reservoir characterization of the Mt. Simon Sandstone, Illinois Basin, USA

USGS Publications Warehouse

Frailey, S.M.; Damico, J.; Leetaru, H.E.

2011-01-01

The integration of open hole well log analyses, core analyses and pressure transient analyses was used for reservoir characterization of the Mt. Simon sandstone. Characterization of the injection interval provides the basis for a geologic model to support the baseline MVA model, specify pressure design requirements of surface equipment, develop completion strategies, estimate injection rates, and project the CO2 plume distribution.The Cambrian-age Mt. Simon Sandstone overlies the Precambrian granite basement of the Illinois Basin. The Mt. Simon is relatively thick formation exceeding 800 meters in some areas of the Illinois Basin. In the deeper part of the basin where sequestration is likely to occur at depths exceeding 1000 m, horizontal core permeability ranges from less than 1 ?? 10-12 cm 2 to greater than 1 ?? 10-8 cm2. Well log and core porosity can be up to 30% in the basal Mt. Simon reservoir. For modeling purposes, reservoir characterization includes absolute horizontal and vertical permeability, effective porosity, net and gross thickness, and depth. For horizontal permeability, log porosity was correlated with core. The core porosity-permeability correlation was improved by using grain size as an indication of pore throat size. After numerous attempts to identify an appropriate log signature, the calculated cementation exponent from Archie's porosity and resistivity relationships was used to identify which porosity-permeability correlation to apply and a permeability log was made. Due to the relatively large thickness of the Mt. Simon, vertical permeability is an important attribute to understand the distribution of CO2 when the injection interval is in the lower part of the unit. Only core analyses and specifically designed pressure transient tests can yield vertical permeability. Many reservoir flow models show that 500-800 m from the injection well most of the CO2 migrates upward depending on the magnitude of the vertical permeability and CO2 injection rate (CO2 velocity). Assigning a specific value of vertical permeability to model cells is dependent on the vertical height of the model cell. Measured vertical permeability on core is scale dependent, such that lower vertical permeability is expected over longer core lengths compared to smaller lengths. Consequently, a series of vertical permeability tests were conducted on whole core varying in lengths of samples from 7 cm to 30 cm that showed vertical perm could change by an order of magnitude over a 30 cm height. For one well, the results from a series of pressure transient tests over a perforated interval much smaller than the gross thickness (<2%) confirmed the core-log based geologic model for vertical and horizontal permeability. A partial penetration model was used to estimate the horizontal and vertical permeability over a portion of the modeled area using series and parallel flow averaging techniques. ?? 2011 Published by Elsevier Ltd.

Grain-size dynamics beneath mid-ocean ridges: Implications for permeability and melt extraction.

PubMed

Turner, Andrew J; Katz, Richard F; Behn, Mark D

2015-03-01

Grain size is an important control on mantle viscosity and permeability, but is difficult or impossible to measure in situ. We construct a two-dimensional, single phase model for the steady state mean grain size beneath a mid-ocean ridge. The mantle rheology is modeled as a composite of diffusion creep, dislocation creep, dislocation accommodated grain boundary sliding, and a plastic stress limiter. The mean grain size is calculated by the paleowattmeter relationship of Austin and Evans (2007). We investigate the sensitivity of our model to global variations in grain growth exponent, potential temperature, spreading-rate, and mantle hydration. We interpret the mean grain-size field in terms of its permeability to melt transport. The permeability structure due to mean grain size may be approximated as a high permeability region beneath a low permeability region. The transition between high and low permeability regions occurs across a boundary that is steeply inclined toward the ridge axis. We hypothesize that such a permeability structure generated from the variability of the mean grain size may focus melt toward the ridge axis, analogous to Sparks and Parmentier (1991)-type focusing. This focusing may, in turn, constrain the region where significant melt fractions are observed by seismic or magnetotelluric surveys. This interpretation of melt focusing via the grain-size permeability structure is consistent with MT observation of the asthenosphere beneath the East Pacific Rise. The grain-size field beneath MORs can vary over orders of magnitude The grain-size field affects the rheology and permeability of the asthenosphere The grain-size field may focus melt toward the ridge axis.

Angiopoietin-2 mediates blood-brain barrier impairment and colonization of triple-negative breast cancer cells in brain.

PubMed

Avraham, Hava Karsenty; Jiang, Shuxian; Fu, Yigong; Nakshatri, Harikrishna; Ovadia, Haim; Avraham, Shalom

2014-02-01

Although the incidence of breast cancer metastasis (BCM) in brain has increased significantly in triple-negative breast cancer (TNBC), the mechanisms remain elusive. Using in vivo mouse models for BCM in brain, we observed that TNBC cells crossed the blood-brain barrier (BBB), lodged in the brain microvasculature and remained adjacent to brain microvascular endothelial cells (BMECs). Breaching of the BBB in vivo by TNBCs resulted in increased BBB permeability and changes in ZO-1 and claudin-5 tight junction (TJ) protein structures. Angiopoietin-2 expression was elevated in BMECs and was correlated with BBB disruption. Secreted Ang-2 impaired TJ structures and increased BBB permeability. Treatment of mice with the neutralizing Ang-2 peptibody trebananib prevented changes in the BBB integrity and BMEC destabilization, resulting in inhibition of TNBC colonization in brain. Thus, Ang-2 is involved in initial steps of brain metastasis cascade, and inhibitors for Ang-2 may serve as potential therapeutics for brain metastasis. Copyright © 2013 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.

Impact of Chemical Structure on Conjunctival Drug Permeability: Adopting Porcine Conjunctiva and Cassette Dosing for Construction of In Silico Model.

PubMed

Ramsay, Eva; Ruponen, Marika; Picardat, Théo; Tengvall, Unni; Tuomainen, Marjo; Auriola, Seppo; Toropainen, Elisa; Urtti, Arto; Del Amo, Eva M

2017-09-01

Conjunctiva occupies most of the ocular surface area, and conjunctival permeability affects ocular and systemic drug absorption of topical ocular medications. Therefore, the aim of this study was to obtain a computational in silico model for structure-based prediction of conjunctival drug permeability. This was done by employing cassette dosing and quantitative structure-property relationship (QSPR) approach. Permeability studies were performed ex vivo across fresh porcine conjunctiva and simultaneous dosing of a cassette mixture composed of 32 clinically relevant drug molecules with wide chemical space. The apparent permeability values were obtained using drug concentrations that were quantified with liquid chromatography tandem-mass spectrometry. The experimental data were utilized for building a QSPR model for conjunctival permeability predictions. The conjunctival permeability values presented a 17-fold range (0.63-10.74 × 10 -6 cm/s). The final QSPR had a Q 2 value of 0.62 and predicted the external test set with a mean fold error of 1.34. The polar surface area, hydrogen bond donor, and halogen ratio were the most relevant descriptors for defining conjunctival permeability. This work presents for the first time a predictive QSPR model of conjunctival drug permeability and a comprehensive description on conjunctival isolation from the porcine eye. The model can be used for developing new ocular drugs. Copyright © 2017 American Pharmacists Association®. Published by Elsevier Inc. All rights reserved.

CO2 breakthrough pressure and permeability for unsaturated low-permeability sandstone of the Ordos Basin

NASA Astrophysics Data System (ADS)

Zhao, Yan; Yu, Qingchun

2017-07-01

With rising threats from greenhouse gases, capture and injection of CO2 into suitable underground formations is being considered as a method to reduce anthropogenic emissions of CO2 to the atmosphere. As the injected CO2 will remain in storage for hundreds of years, the safety of CO2 geologic sequestration is a major concern. The low-permeability sandstone of the Ordos Basin in China is regarded as both caprock and reservoir rock, so understanding the breakthrough pressure and permeability of the rock is necessary. Because part of the pore volume experiences a non-wetting phase during the CO2 injection and migration process, the rock may be in an unsaturated condition. And if accidental leakage occurs, CO2 will migrate up into the unsaturated zone. In this study, breakthrough experiments were performed at various degrees of water saturation with five core samples of low-permeability sandstone obtained from the Ordos Basin. The experiments were conducted at 40 °C and pressures of >8 MPa to simulate the geological conditions for CO2 sequestration. The results indicate that the degree of water saturation and the pore structure are the main factors affecting the rock breakthrough pressure and permeability, since the influence of calcite dissolution and clay mineral swelling during the saturation process is excluded. Increasing the average pore radius or most probable pore radius leads to a reduction in the breakthrough pressure and an increase by several orders of magnitude in scCO2 effective permeability. In addition, the breakthrough pressure rises and the scCO2 effective permeability decreases when the water saturation increases. However, when the average pore radius is greater than 0.151 μm, the degree of water saturation will has a little effect on the breakthrough pressure. On this foundation, if the most probable pore radius of the core sample reaches 1.760 μm, the breakthrough pressure will not be impacted by the increasing water saturation. We establish correlations between (1) the breakthrough pressure and average pore radius or most probable pore radius, (2) the breakthrough pressure and scCO2 effective permeability, (3) the breakthrough pressure and water saturation, and (4) the scCO2 effective permeability and water saturation. This study provides practical information for further studies of CO2 sequestration as well as the caprock evaluation.

Intraepithelial gammadelta+ lymphocytes maintain the integrity of intestinal epithelial tight junctions in response to infection.

PubMed

Dalton, Jane E; Cruickshank, Sheena M; Egan, Charlotte E; Mears, Rainy; Newton, Darren J; Andrew, Elizabeth M; Lawrence, Beth; Howell, Gareth; Else, Kathryn J; Gubbels, Marc-Jan; Striepen, Boris; Smith, Judith E; White, Stanley J; Carding, Simon R

2006-09-01

Intestinal epithelial integrity and permeability is dependent on intercellular tight junction (TJ) complexes. How TJ integrity is regulated remains unclear, although phosphorylation and dephosphorylation of the integral membrane protein occludin is an important determinant of TJ formation and epithelial permeability. We have investigated the role intestinal intraepithelial lymphocytes (iIELs) play in regulating epithelial permeability in response to infection. Recombinant strains of Toxoplasma gondii were used to assess intestinal epithelial barrier function and TJ integrity in mice with intact or depleted populations of iIELs. Alterations in epithelial permeability were correlated with TJ structure and the state of phosphorylation of occludin. iIEL in vivo reconstitution experiments were used to identify the iIELs required to maintain epithelial permeability and TJ integrity. In the absence of gammadelta+ iIELs, intestinal epithelial barrier function and the ability to restrict epithelial transmigration of Toxoplasma and the unrelated intracellular bacterial pathogen Salmonella typhimurium was severely compromised. Leaky epithelium in gammadelta+ iIEL-deficient mice was associated with the absence of phosphorylation of serine residues of occludin and lack of claudin 3 and zona occludens-1 proteins in TJ complexes. These deficiencies were attributable to the absence of a single subset of gammadelta T-cell receptor (TCR-Vgamma7+) iIELs that, after reconstituting gammadelta iIEL-deficient mice, restored epithelial barrier function and TJ complexes, resulting in increased resistance to infection. These findings identify a novel role for gammadelta+ iIELs in maintaining TJ integrity and epithelial barrier function that have implications for understanding the pathogenesis of intestinal inflammatory diseases associated with disruption of TJ complexes.

Fault zone hydrogeologic properties and processes revealed by borehole temperature monitoring

NASA Astrophysics Data System (ADS)

Fulton, P. M.; Brodsky, E. E.

2015-12-01

High-resolution borehole temperature monitoring can provide valuable insight into the hydrogeologic structure of fault zones and transient processes that affect fault zone stability. Here we report on results from a subseafloor temperature observatory within the Japan Trench plate boundary fault. In our efforts to interpret this unusual dataset, we have developed several new methods for probing hydrogeologic properties and processes. We illustrate how spatial variations in the thermal recovery of the borehole after drilling and other spectral characteristics provide a measure of the subsurface permeability architecture. More permeable zones allow for greater infiltration of cool drilling fluids, are more greatly thermally disturbed, and take longer to recover. The results from the JFAST (Japan Trench Fast Drilling Project) observatory are consistent with geophysical logs, core data, and other hydrologic observations and suggest a permeable damage zone consisting of steeply dipping faults and fractures overlays a low-permeability clay-rich plate boundary fault. Using high-resolution time series data, we have also developed methods to map out when and where fluid advection occurs in the subsurface over time. In the JFAST data, these techniques reveal dozens of transient earthquake-driven fluid pulses that are spatially correlated and consistently located around inferred permeable areas of the fault damage zone. These observations are suspected to reflect transient fluid flow driven by pore pressure changes in response to dynamic and/or static stresses associated with nearby earthquakes. This newly recognized hydrologic phenomenon has implications for understanding subduction zone heat and chemical transport as well as the redistribution of pore fluid pressure which influences fault stability and can trigger other earthquakes.

Permeability-Porosity Relationships of Subduction Zone Sediments

NASA Astrophysics Data System (ADS)

Gamage, K.; Screaton, E.; Bekins, B.; Aiello, I.

2008-12-01

Permeability-porosity relationships for sediments from Northern Barbados, Costa Rica, Nankai, and Peru subduction zones were examined based on their sediment type and grain size distribution. Greater correlation was observed between permeability and porosity for siliciclastic sediments, diatom oozes, and nannofossil chalk than for nannofossil oozes. For siliciclastic sediments, grouping of sediments by clay content yields relationships that are generally consistent with results from other marine settings and suggest decreasing permeability for a given porosity as clay content increases. Correction of measured porosities for smectite content generally improves the quality of permeability-porosity relationships. The relationship between permeability and porosity for diatom oozes may be controlled by the amount of clay present in the ooze, causing diatom oozes to behave similarly to siliciclastic sediments. For a given porosity the nannofossil oozes have higher permeability values by 1.5 orders of magnitude than the siliciclastic sediments. However, the use of a permeability-porosity relation may not be appropriate for unconsolidated carbonates such as nannofossil oozes. This study provided insight to the effects of porosity correction for smectite, variations in lithology and grain size in permeability-porosity relationships. However, further progress in delineating controls on permeability will require more careful and better documented permeability tests on characterized samples.

Matrix diffusion coefficients in volcanic rocks at the Nevada test site: influence of matrix porosity, matrix permeability, and fracture coating minerals.

PubMed

Reimus, Paul W; Callahan, Timothy J; Ware, S Doug; Haga, Marc J; Counce, Dale A

2007-08-15

Diffusion cell experiments were conducted to measure nonsorbing solute matrix diffusion coefficients in forty-seven different volcanic rock matrix samples from eight different locations (with multiple depth intervals represented at several locations) at the Nevada Test Site. The solutes used in the experiments included bromide, iodide, pentafluorobenzoate (PFBA), and tritiated water ((3)HHO). The porosity and saturated permeability of most of the diffusion cell samples were measured to evaluate the correlation of these two variables with tracer matrix diffusion coefficients divided by the free-water diffusion coefficient (D(m)/D*). To investigate the influence of fracture coating minerals on matrix diffusion, ten of the diffusion cells represented paired samples from the same depth interval in which one sample contained a fracture surface with mineral coatings and the other sample consisted of only pure matrix. The log of (D(m)/D*) was found to be positively correlated with both the matrix porosity and the log of matrix permeability. A multiple linear regression analysis indicated that both parameters contributed significantly to the regression at the 95% confidence level. However, the log of the matrix diffusion coefficient was more highly-correlated with the log of matrix permeability than with matrix porosity, which suggests that matrix diffusion coefficients, like matrix permeabilities, have a greater dependence on the interconnectedness of matrix porosity than on the matrix porosity itself. The regression equation for the volcanic rocks was found to provide satisfactory predictions of log(D(m)/D*) for other types of rocks with similar ranges of matrix porosity and permeability as the volcanic rocks, but it did a poorer job predicting log(D(m)/D*) for rocks with lower porosities and/or permeabilities. The presence of mineral coatings on fracture walls did not appear to have a significant effect on matrix diffusion in the ten paired diffusion cell experiments.

Quantifying Intracranial Aneurysm Wall Permeability for Risk Assessment Using Dynamic Contrast-Enhanced MRI: A Pilot Study.

PubMed

Vakil, P; Ansari, S A; Cantrell, C G; Eddleman, C S; Dehkordi, F H; Vranic, J; Hurley, M C; Batjer, H H; Bendok, B R; Carroll, T J

2015-05-01

Pathological changes in the intracranial aneurysm wall may lead to increases in its permeability; however the clinical significance of such changes has not been explored. The purpose of this pilot study was to quantify intracranial aneurysm wall permeability (K(trans), VL) to contrast agent as a measure of aneurysm rupture risk and compare these parameters against other established measures of rupture risk. We hypothesized K(trans) would be associated with intracranial aneurysm rupture risk as defined by various anatomic, imaging, and clinical risk factors. Twenty-seven unruptured intracranial aneurysms in 23 patients were imaged with dynamic contrast-enhanced MR imaging, and wall permeability parameters (K(trans), VL) were measured in regions adjacent to the aneurysm wall and along the paired control MCA by 2 blinded observers. K(trans) and VL were evaluated as markers of rupture risk by comparing them against established clinical (symptomatic lesions) and anatomic (size, location, morphology, multiplicity) risk metrics. Interobserver agreement was strong as shown in regression analysis (R(2) > 0.84) and intraclass correlation (intraclass correlation coefficient >0.92), indicating that the K(trans) can be reliably assessed clinically. All intracranial aneurysms had a pronounced increase in wall permeability compared with the paired healthy MCA (P < .001). Regression analysis demonstrated a significant trend toward an increased K(trans) with increasing aneurysm size (P < .001). Logistic regression showed that K(trans) also predicted risk in anatomic (P = .02) and combined anatomic/clinical (P = .03) groups independent of size. We report the first evidence of dynamic contrast-enhanced MR imaging-modeled contrast permeability in intracranial aneurysms. We found that contrast agent permeability across the aneurysm wall correlated significantly with both aneurysm size and size-independent anatomic risk factors. In addition, K(trans) was a significant and size-independent predictor of morphologically and clinically defined high-risk aneurysms. © 2015 by American Journal of Neuroradiology.

Matrix diffusion coefficients in volcanic rocks at the Nevada test site: Influence of matrix porosity, matrix permeability, and fracture coating minerals

NASA Astrophysics Data System (ADS)

Reimus, Paul W.; Callahan, Timothy J.; Ware, S. Doug; Haga, Marc J.; Counce, Dale A.

2007-08-01

Diffusion cell experiments were conducted to measure nonsorbing solute matrix diffusion coefficients in forty-seven different volcanic rock matrix samples from eight different locations (with multiple depth intervals represented at several locations) at the Nevada Test Site. The solutes used in the experiments included bromide, iodide, pentafluorobenzoate (PFBA), and tritiated water ( 3HHO). The porosity and saturated permeability of most of the diffusion cell samples were measured to evaluate the correlation of these two variables with tracer matrix diffusion coefficients divided by the free-water diffusion coefficient ( Dm/ D*). To investigate the influence of fracture coating minerals on matrix diffusion, ten of the diffusion cells represented paired samples from the same depth interval in which one sample contained a fracture surface with mineral coatings and the other sample consisted of only pure matrix. The log of ( Dm/ D*) was found to be positively correlated with both the matrix porosity and the log of matrix permeability. A multiple linear regression analysis indicated that both parameters contributed significantly to the regression at the 95% confidence level. However, the log of the matrix diffusion coefficient was more highly-correlated with the log of matrix permeability than with matrix porosity, which suggests that matrix diffusion coefficients, like matrix permeabilities, have a greater dependence on the interconnectedness of matrix porosity than on the matrix porosity itself. The regression equation for the volcanic rocks was found to provide satisfactory predictions of log( Dm/ D*) for other types of rocks with similar ranges of matrix porosity and permeability as the volcanic rocks, but it did a poorer job predicting log( Dm/ D*) for rocks with lower porosities and/or permeabilities. The presence of mineral coatings on fracture walls did not appear to have a significant effect on matrix diffusion in the ten paired diffusion cell experiments.

a Fractal Permeability Model Coupling Boundary-Layer Effect for Tight Oil Reservoirs

NASA Astrophysics Data System (ADS)

Wang, Fuyong; Liu, Zhichao; Jiao, Liang; Wang, Congle; Guo, Hu

A fractal permeability model coupling non-flowing boundary-layer effect for tight oil reservoirs was proposed. Firstly, pore structures of tight formations were characterized with fractal theory. Then, with the empirical equation of boundary-layer thickness, Hagen-Poiseuille equation and fractal theory, a fractal torturous capillary tube model coupled with boundary-layer effect was developed, and verified with experimental data. Finally, the parameters influencing effective liquid permeability were quantitatively investigated. The research results show that effective liquid permeability of tight formations is not only decided by pore structures, but also affected by boundary-layer distributions, and effective liquid permeability is the function of fluid type, fluid viscosity, pressure gradient, fractal dimension, tortuosity fractal dimension, minimum pore radius and maximum pore radius. For the tight formations dominated with nanoscale pores, boundary-layer effect can significantly reduce effective liquid permeability, especially under low pressure gradient.

Quantitative MRI study of the permeability of peritumoral brain edema in lung cancer patients with brain metastases.

PubMed

Wang, Dan; Wang, Ming-Liang; Li, Yue-Hua

2017-08-15

To use Ktrans to evaluate the aggressiveness and vascular permeability of peritumoral edema in cases of lung cancer brain metastases. A total of 68 lung cancer patients with 92 metastatic brain lesions were enrolled (20 metastatic lesions only in the gray matter - group 1; and 72 metastatic lesions located in the gray and white matter junction - group 2). All patients underwent MRI examination, which involved a dual angle (2° and 15°) enhanced T1W-VIBE (volume interpolated breath-hold examination) sequence to calculate the T1 parameter map. We used the enhanced T1-3D sequence to measure the tumor volume. The vascular permeability coefficient (Ktrans) was calculated using the single-compartment Tofts model, motion registration, and quick input mode. We examined the correlations of Ktrans with the edema index (EI), Ktrans with the tumor volume, and Ktrans with the histological expression of MMP-9 or VEGF in the original lung tumor using Pearson's' correlation analysis. Ktrans and EI were highly correlated in group 2 (r=0.66687; P<0.001) and not correlated in group 1 (r=0.33096; P=0.15405). Ktrans was also moderately related to the positive expression of MMP-9 (r=0.50912; P<0.001) and VEGF (r=0.36995; P=0.00138) There is statistical correlation between Ktrans and EI for group 2, and no statistical correlation between Ktrans and EI for group 1. The Ktrans of the peritumoral brain edema may be used to indicate the aggressiveness and vascular permeability of brain metastases in patients with lung cancer. Copyright © 2017 Elsevier B.V. All rights reserved.

Microfluidic device, and related methods

NASA Technical Reports Server (NTRS)

Wong, Eric W. (Inventor)

2010-01-01

A method of making a microfluidic device is provided. The method features patterning a permeable wall on a substrate, and surrounding the permeable wall with a solid, non-permeable boundary structure to establish a microfluidic channel having a cross-sectional dimension less than 5,000 microns and a cross-sectional area at least partially filled with the permeable wall so that fluid flowing through the microfluidic channel at least partially passes through the permeable wall.

Measuring and predicting reservoir heterogeneity in complex deposystems. Annual report, September 20, 1990--September 20, 1991

DOE Office of Scientific and Technical Information (OSTI.GOV)

Donaldson, A.; Shumaker, R.; Laughrey, C.

1992-08-01

The Lower Mississippian Big Injun sandstone, a major oil producer in the western half of West Virginia, consists of several sandstones that overstep each west. Examination of cores and thin sections has led to preliminary interpretations of depositional environments for the Big Injun. These include distributary-mouth bars with associated distal, bar crest and back bar environments in a marine-deltaic system; and channel, point bar and chute environments in a fluvial system. Overall, the Big Injun is a medium-grained sublitharenite in which initially high porosity has been modified by compaction and diagenesis. Chlorite grain coatings helped to preserve original porosity, whereasmore » illite promoted pressure solution during compaction, resulting in a loss of porosity. Diagenetic effects within specific environments are being evaluated to determine if environmental interpretations can be used to predict porosity preservation. Core plugs taken from cores in Granny Creek field were analyzed for porosity and horizontal and vertical permeability. Directional permeability was negligible, but permeability does correlate with depth. Changes in permeability with depth can be related to subdivisions of the Big Injun determined from density logs. Permeability also correlated with porosity, but porosity values derived from both cores and logs show no significant correlation trend at present. A layered reservoir model is being developed to evaluate the effect of these vertical heterogeneities. Initial attempts to characterize the heterogeneity of the Big Injun reservoir in Granny Creek field used a number of direct and indirect methods.« less

Measuring and predicting reservoir heterogeneity in complex deposystems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Donaldson, A.; Shumaker, R.; Laughrey, C.

1992-08-01

The Lower Mississippian Big Injun sandstone, a major oil producer in the western half of West Virginia, consists of several sandstones that overstep each west. Examination of cores and thin sections has led to preliminary interpretations of depositional environments for the Big Injun. These include distributary-mouth bars with associated distal, bar crest and back bar environments in a marine-deltaic system; and channel, point bar and chute environments in a fluvial system. Overall, the Big Injun is a medium-grained sublitharenite in which initially high porosity has been modified by compaction and diagenesis. Chlorite grain coatings helped to preserve original porosity, whereasmore » illite promoted pressure solution during compaction, resulting in a loss of porosity. Diagenetic effects within specific environments are being evaluated to determine if environmental interpretations can be used to predict porosity preservation. Core plugs taken from cores in Granny Creek field were analyzed for porosity and horizontal and vertical permeability. Directional permeability was negligible, but permeability does correlate with depth. Changes in permeability with depth can be related to subdivisions of the Big Injun determined from density logs. Permeability also correlated with porosity, but porosity values derived from both cores and logs show no significant correlation trend at present. A layered reservoir model is being developed to evaluate the effect of these vertical heterogeneities. Initial attempts to characterize the heterogeneity of the Big Injun reservoir in Granny Creek field used a number of direct and indirect methods.« less

Correlating elastic and plastic deformation with magnetic permeability values

NASA Astrophysics Data System (ADS)

Papadopoulou, S.

2017-12-01

This paper investigates the utilization of magnetic permeability method in determining elastic and plastic deformation state of ferromagnetic steels. The results have shown a strong degradation of the magnetic values on plastically region due to the irreversible movements of the magnetic domain walls.

Investigating the effects of rock porosity and permeability on the performance of nitrogen injection into a southern Iranian oil reservoirs through neural network

NASA Astrophysics Data System (ADS)

Gheshmi, M. S.; Fatahiyan, S. M.; Khanesary, N. T.; Sia, C. W.; Momeni, M. S.

2018-03-01

In this work, a comprehensive model for Nitrogen injection into an oil reservoir (southern Iranian oil fields) was developed and used to investigate the effects of rock porosity and permeability on the oil production rate and the reservoir pressure decline. The model was simulated and developed by using ECLIPSE300 software, which involved two scenarios as porosity change and permeability changes in the horizontal direction. We found that the maximum pressure loss occurs at a porosity value of 0.07, which later on, goes to pressure buildup due to reservoir saturation with the gas. Also we found that minimum pressure loss is encountered at porosity 0.46. Increases in both pressure and permeability in the horizontal direction result in corresponding increase in the production rate, and the pressure drop speeds up at the beginning of production as it increases. However, afterwards, this pressure drop results in an increase in pressure because of reservoir saturation. Besides, we determined the regression values, R, for the correlation between pressure and total production, as well as for the correlation between permeability and the total production, using neural network discipline.

Investigation clogging dynamic of permeable pavement systems using embedded sensors

NASA Astrophysics Data System (ADS)

Razzaghmanesh, Mostafa; Borst, Michael

2018-02-01

Permeable pavement is a stormwater control measure commonly selected in both new and retrofit applications. However, there is limited information about the clogging mechanism of these systems that effects the infiltration. A permeable pavement site located at the Seitz Elementary School, on Fort Riley, Kansas was selected for this study. An 80-space parking lot was built behind the school as part of an EPA collaboration with the U.S. Army. The parking lot design includes a permeable interlocking concrete pavement section along the downgradient edge. This study monitored the clogging progress of the pavement section using twelve water content reflectometers and three buried tipping bucket rain gauges. This clogging dynamic investigation was divided into three stages namely pre-clogged, transitional, and clogged. Recorded initial relative water content of all three stages were significantly and negatively correlated to antecedent dry weather periods with stronger correlations during clogged conditions. The peak relative water content correlation with peak rainfall 10-min intensity was significant for the water content reflectometers located on the western edge away from the eastern edge; this correlation was strongest during transition stage. Once clogged, rainfall measurements no longer correlated with the buried tipping bucket rain gauges. Both water content reflectometers and buried tipping bucket rain gauges showed the progress of surface clogging. For every 6 mm of rain, clogging advanced 1 mm across the surface. The results generally support the hypothesis that the clogging progresses from the upgradient to the downgradient edge. The magnitude of the contributing drainage area and rainfall characteristics are effective factors on rate and progression of clogging.

Effects of eddy current and dispersion of magnetic anisotropy on the high-frequency permeability of Fe-based nanocomposites

NASA Astrophysics Data System (ADS)

Han, M.; Rozanov, K. N.; Zezyulina, P. A.; Wu, Yan-Hui

2015-06-01

Fe-Cu-Nb-Si-B microflakes have been prepared by ball milling. The structural, magnetostatic and microwave permeability of the flakes and flake-filled composites have been studied. Two ferromagnetic phases, nanograins and amorphous matrix, are found in the flakes. The Mössbauer study shows that the nanograins are α-Fe3(Si) with D03 superlattice structure. High resolution transmission electron microscopy shows that the nanograins are well dispersed in the matrix. The microwave permeability of composites containing the flakes has been measured. The comparison of the intrinsic permeability of the flakes obtained from the permeability measurements and from the anisotropy field distribution reveals a disagreement in the magnetic loss peak location. It is concluded that the low-frequency loss in the composites is not due to the effect of eddy currents. The low-frequency loss may be attributed to other sources, such as domain wall motion or peculiarities of the magnetic structure of the flakes in the composite.

Study on Surface Permeability of Concrete under Immersion

PubMed Central

Liu, Jun; Xing, Feng; Dong, Biqin; Ma, Hongyan; Pan, Dong

2014-01-01

In this paper, concrete specimens are immersed in ultrapure water, to study the evolutions of surface permeability, pore structure and paste microstructure following the prolonging of immersion period. According to the results, after 30-day immersion, the surface permeability of concrete becomes higher as compared with the value before immersion. However, further immersion makes the surface permeability decrease, so that the value measured after 150-day immersion is only half that measured after 30-day immersion. The early increase in surface permeability should be mainly attributed to the leaching of calcium hydroxide, while the later decrease to the refinement of pore structure due to hydration. The two effects work simultaneously and compete throughout the immersion period. The proposed mechanisms get support from microscopic measurements and observations. PMID:28788490

Artificial Lipid Membrane Permeability Method for Predicting Intestinal Drug Transport: Probing the Determining Step in the Oral Absorption of Sulfadiazine; Influence of the Formation of Binary and Ternary Complexes with Cyclodextrins.

PubMed

Delrivo, Alicia; Aloisio, Carolina; Longhi, Marcela R; Granero, Gladys

2018-04-01

We propose an in vitro permeability assay by using a modified lipid membrane to predict the in vivo intestinal passive permeability of drugs. Two conditions were tested, one with a gradient pH (pH 5.5 donor/pH 7.4 receptor) and the other with an iso-pH 7.4. The predictability of the method was established by correlating the obtained apparent intestinal permeability coefficients (P app ) and the oral dose fraction absorbed in humans (f a ) of 16 drugs with different absorption properties. The P app values correlated well with the absorption rates under the two conditions, and the method showed high predictability and good reproducibility. On the other hand, with this method, we successfully predicted the transport characteristics of oral sulfadiazine (SDZ). Also, the tradeoff between the increase in the solubility of SDZ by its complex formation with cyclodextrins and/or aminoacids and its oral permeability was assessed. Results suggest that SDZ is transported through the gastrointestinal epithelium by passive diffusion in a pH-dependent manner. These results support the classification of SDZ as a high/low borderline permeability compound and are in agreement with the Biopharmaceutics Classification Systems (BCS). This conclusion is consistent with the in vivo pharmacokinetic properties of SDZ.

A Fractal Permeability Model for Shale Oil Reservoir

NASA Astrophysics Data System (ADS)

Zhang, Tao; Dong, Mingzhe; Li, Yajun

2018-01-01

In this work, a fractal analytical model is proposed to predict the permeability of shale reservoir. The proposed model explicitly relates the permeability to the micro-structural parameters (tortuosity, pore area fractal dimensions, porosity and slip velocity coefficient) of shale.

Dynamic permeability in fault damage zones induced by repeated coseismic fracturing events

NASA Astrophysics Data System (ADS)

Aben, F. M.; Doan, M. L.; Mitchell, T. M.

2017-12-01

Off-fault fracture damage in upper crustal fault zones change the fault zone properties and affect various co- and interseismic processes. One of these properties is the permeability of the fault damage zone rocks, which is generally higher than the surrounding host rock. This allows large-scale fluid flow through the fault zone that affects fault healing and promotes mineral transformation processes. Moreover, it might play an important role in thermal fluid pressurization during an earthquake rupture. The damage zone permeability is dynamic due to coseismic damaging. It is crucial for earthquake mechanics and for longer-term processes to understand how the dynamic permeability structure of a fault looks like and how it evolves with repeated earthquakes. To better detail coseismically induced permeability, we have performed uniaxial split Hopkinson pressure bar experiments on quartz-monzonite rock samples. Two sample sets were created and analyzed: single-loaded samples subjected to varying loading intensities - with damage varying from apparently intact to pulverized - and samples loaded at a constant intensity but with a varying number of repeated loadings. The first set resembles a dynamic permeability structure created by a single large earthquake. The second set resembles a permeability structure created by several earthquakes. After, the permeability and acoustic velocities were measured as a function of confining pressure. The permeability in both datasets shows a large and non-linear increase over several orders of magnitude (from 10-20 up to 10-14 m2) with an increasing amount of fracture damage. This, combined with microstructural analyses of the varying degrees of damage, suggests a percolation threshold. The percolation threshold does not coincide with the pulverization threshold. With increasing confining pressure, the permeability might drop up to two orders of magnitude, which supports the possibility of large coseismic fluid pulses over relatively large distances along a fault. Also, a relatively small threshold could potentially increase permeability in a large volume of rock, given that previous earthquakes already damaged these rocks.

Predicting permeability of regular tissue engineering scaffolds: scaling analysis of pore architecture, scaffold length, and fluid flow rate effects.

PubMed

Rahbari, A; Montazerian, H; Davoodi, E; Homayoonfar, S

2017-02-01

The main aim of this research is to numerically obtain the permeability coefficient in the cylindrical scaffolds. For this purpose, a mathematical analysis was performed to derive an equation for desired porosity in terms of morphological parameters. Then, the considered cylindrical geometries were modeled and the permeability coefficient was calculated according to the velocity and pressure drop values based on the Darcy's law. In order to validate the accuracy of the present numerical solution, the obtained permeability coefficient was compared with the published experimental data. It was observed that this model can predict permeability with the utmost accuracy. Then, the effect of geometrical parameters including porosity, scaffold pore structure, unit cell size, and length of the scaffolds as well as entrance mass flow rate on the permeability of porous structures was studied. Furthermore, a parametric study with scaling laws analysis of sample length and mass flow rate effects on the permeability showed good fit to the obtained data. It can be concluded that the sensitivity of permeability is more noticeable at higher porosities. The present approach can be used to characterize and optimize the scaffold microstructure due to the necessity of cell growth and transferring considerations.

Impact of monovalent cations on soil structure. Part II. Results of two Swiss soils

NASA Astrophysics Data System (ADS)

Farahani, Elham; Emami, Hojat; Keller, Thomas

2018-01-01

In this study, we investigated the impact of adding solutions with different potassium and sodium concentrations on dispersible clay, water retention characteristics, air permeability, and soil shrinkage behaviour using two agricultural soils from Switzerland with different clay content but similar organic carbon to clay ratio. Three different solutions (including only Na, only K, and the combination of both) were added to soil samples at three different cation ratio of soil structural stability levels, and the soil samples were incubated for one month. Our findings showed that the amount of readily dispersible clay increased with increasing Na concentrations and with increasing cation ratio of soil structural stability. The treatment with the maximum Na concentration resulted in the highest water retention and in the lowest shrinkage capacity. This was was associated with high amounts of readily dispersible clay. Air permeability generally increased during incubation due to moderate wetting and drying cycles, but the increase was negatively correlated with readily dispersible clay. Readily dispersible clay decreased with increasing K, while readily dispersible clay increased with increasing K in Iranian soil (Part I of our study). This can be attributed to the different clay mineralogy of the studied soils (muscovite in Part I and illite in Part II).

Simplified Physics Based Models Research Topical Report on Task #2

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mishra, Srikanta; Ganesh, Priya

We present a simplified-physics based approach, where only the most important physical processes are modeled, to develop and validate simplified predictive models of CO2 sequestration in deep saline formation. The system of interest is a single vertical well injecting supercritical CO2 into a 2-D layered reservoir-caprock system with variable layer permeabilities. We use a set of well-designed full-physics compositional simulations to understand key processes and parameters affecting pressure propagation and buoyant plume migration. Based on these simulations, we have developed correlations for dimensionless injectivity as a function of the slope of fractional-flow curve, variance of layer permeability values, and themore » nature of vertical permeability arrangement. The same variables, along with a modified gravity number, can be used to develop a correlation for the total storage efficiency within the CO2 plume footprint. Similar correlations are also developed to predict the average pressure within the injection reservoir, and the pressure buildup within the caprock.« less

The dynamics of coherent flow structures within a submerged permeable bed

NASA Astrophysics Data System (ADS)

Blois, G.; Best, J.; Sambrook Smith, G.; Hardy, R. J.; Lead, J.

2009-12-01

The existence of complex 3D coherent vortical structures in turbulent boundary layers has been widely reported from experimental observations (Adrian et al., 2007, Christensen and Adrian, 2001) and investigations of natural open channel flows (e.g. Kostaschuk and Church, 1993; Best, 2005). The interaction between these flow structures and the solid boundary that is responsible for their generation is also receiving increasing attention due to the central role played by turbulence in governing erosion-deposition processes. Yet, for the majority of studies, the bed roughness has been represented using rough impermeable surfaces. While not inherently acknowledged, most research in this area is thus only strictly applicable to those natural river beds composed either of bedrock or clay, or that have armoured, impermeable, surfaces. Recently, many researchers have noted the need to account for the role of bed permeability in order to accurately reproduce the true nature of flow over permeable gravel-bed rivers. For these cases, the near-bed flow is inherently and mutually linked to the interstitial-flow occurring in the porous solid matrix. This interaction is established through turbulence mechanisms occurring across the interface that may be important for influencing the incipient motion of cohesionless sediment. However, the nature of this turbulence and the formation of coherent structures within such permeable beds remain substantially unresolved due to the technical challenges of collecting direct data in this region. In this paper, we detail the existence and dynamic nature of coherent vortical structures within the individual pore spaces of a permeable bed submerged by a free stream flow. Laboratory experiments are reported in which a permeable flume bed was constructed using spheres packed in an offset cubic arrangement. We applied a high resolution E-PIV (Endoscopic Particle Image Velocimetry) approach in order to fully resolve the instantaneous structure of flow within the permeable bed, which allowed visualisation of coherent vortices in the pore space, and investigation of their formative mechanisms and spatio-temporal evolution. The spatial scale of these structures is found to be of the order of the pore space, with jet flows occurring between interconnected pores and interacting with the spherical particles constituting the solid matrix. Such jets are hypothesized to be triggered by the interstitial pressure gradients between interconnected pores, which in turn are linked to large-scale coherent flow structures in the free-flow that advect and propagate through the permeable bed. As the jet flow interacts with the matrix around the pore space, coherent flow structures are generated with both clockwise and anticlockwise rotation. The nature of these subsurface turbulent flow patterns will be presented, which allows new insight into flows within permeable beds and the hydrodynamic processes triggering the motion of sediment.

Modeling of Permeability Structure Using Pore Pressure and Borehole Strain Monitoring

NASA Astrophysics Data System (ADS)

Kano, Y.; Ito, H.

2011-12-01

Hydraulic or transport property, especially permeability, of the rock affect the behavior of the fault during earthquake rupture and also interseismic period. The methods to determine permeability underground are hydraulic test utilizing borehole and packer or core measurement in laboratory. Another way to know the permeability around a borehole is to examine responses of pore pressure to natural loading such as barometric pressure change at surface or earth tides. Using response to natural deformation is conventional method for water resource research. The scale of measurement is different among in-situ hydraulic test, response method, and core measurement. It is not clear that the relationship between permeability values form each method for an inhomogeneous medium such as a fault zone. Supposing the measurement of the response to natural loading, we made a model calculation of permeability structure around a fault zone. The model is 2 dimensional and constructed with vertical high-permeability layer in uniform low-permeability zone. We assume the upper and lower boundaries are drained and no-flow condition. We calculated the flow and deformation of the model for step and cyclic loading by numerically solving a two-dimensional diffusion equation. The model calculation shows that the width of the high-permeability zone and contrast of the permeability between high- and low- permeability zones control the contribution of the low-permeability zone. We made a calculation with combinations of permeability and fault width to evaluate the sensitivity of the parameters to in-situ measurement of permeability. We applied the model calculation to the field results of in-situ packer test, and natural response of water level and strain monitoring carried out in the Kamioka mine. The model calculation shows that knowledge of permeability in host rock is also important to obtain permeability of fault zone itself. The model calculations help to design long-term pore pressure monitoring, in-situ hydraulic test, and core measurement using drill holes to better understand fault zone hydraulic properties.

Positron annihilation lifetime spectroscopy (PALS) as a characterization technique for nanostructured self-assembled amphiphile systems.

PubMed

Dong, Aurelia W; Pascual-Izarra, Carlos; Pas, Steven J; Hill, Anita J; Boyd, Ben J; Drummond, Calum J

2009-01-08

Positron annihilation lifetime spectroscopy (PALS) has potential as a novel rapid characterization method for self-assembly amphiphile systems; however, a lack of systematic correlation of PALS parameters with structural attributes has limited its more widespread application. In this study, using the well-characterized phytantriol/water and the phytantriol/vitamin E acetate/water self-assembly amphiphile systems, the impact of systematic structural changes controlled by changes in composition and temperature on PALS parameters has been studied. The PALS parameters (orthopositronium (oPs) lifetime and intensity signatures) were shown to be sensitive to the molecular packing and mobility of the self-assembled lipid molecules in various lyotropic liquid crystalline phases, enabling differentiation between liquid crystalline structures. The oPs lifetime, related to the molecular packing and mobility, is correlated with rheological properties of the individual mesophases. The oPs lifetime links the lipid chain packing and mobility in the various mesophases to resultant macroscopic properties, such as permeability, which is critical for the use of these mesophase structures as diffusion-controlled release matrices for active liposoluble compounds.

The formation of inflammatory demyelinated lesions in cerebral white matter

PubMed Central

Maggi, Pietro; Cummings Macri, Sheila M.; Gaitán, María I.; Leibovitch, Emily; Wholer, Jillian E; Knight, Heather L.; Ellis, Mary; Wu, Tianxia; Silva, Afonso C.; Massacesi, Luca; Jacobson, Steven; Westmoreland, Susan; Reich, Daniel S.

2016-01-01

Objective Vascular permeability and inflammatory demyelination are intimately linked in the brain, but what is their temporal relationship? We aimed to determine the radiological correlates of the earliest tissue changes accompanying demyelination in a primate model of multiple sclerosis (MS), experimental autoimmune encephalomyelitis (EAE) in the common marmoset. Methods At 7 tesla MRI, T1 maps, proton density and T2-weighted images were acquired before and after EAE induction in 5 marmosets (every other week before lesions appeared, weekly thereafter). From scans before and after intravenous injection of contrast material, we measured the evolution of lesional blood-brain-barrier (BBB) permeability, comparing in vivo MRI to postmortem tissue examination. Results On average, BBB permeability increased 3.5 fold (p<0.0001) over the 4 weeks prior to lesion appearance. Permeability gradually decreased after lesion appearance, with attendant changes in the distribution of inflammatory cells (predominantly macrophages and microglia) and demyelination. On tissue analysis, we also identified small perivascular foci of microglia and T cells without blood-derived macrophages or demyelination. These foci had no visible MRI correlates, though permeability within the foci, but not outside, increased in the weeks before the animals died (p<0.0001). Interpretation This study provides compelling evidence that in marmoset EAE, which forms lesions strongly resembling those of MS, early changes in vascular permeability are associated with perivascular inflammatory cuffing and parenchymal microglial activation but precede the arrival of blood-derived monocytes that accompany demyelination. Prospective detection of transient permeability changes could afford an opportunity for early intervention to forestall tissue damage in newly forming lesions. PMID:25088017

The formation of inflammatory demyelinated lesions in cerebral white matter.

PubMed

Maggi, Pietro; Macri, Sheila M Cummings; Gaitán, María I; Leibovitch, Emily; Wholer, Jillian E; Knight, Heather L; Ellis, Mary; Wu, Tianxia; Silva, Afonso C; Massacesi, Luca; Jacobson, Steven; Westmoreland, Susan; Reich, Daniel S

2014-10-01

Vascular permeability and inflammatory demyelination are intimately linked in the brain, but what is their temporal relationship? We aimed to determine the radiological correlates of the earliest tissue changes accompanying demyelination in a primate model of multiple sclerosis (MS), experimental autoimmune encephalomyelitis (EAE) in the common marmoset. By 7T magnetic resonance imaging (MRI), T1 maps, proton density, and T2-weighted images were acquired before and after EAE induction in 5 marmosets (every other week before lesions appeared, weekly thereafter). From scans before and after intravenous injection of contrast material, we measured the evolution of lesional blood-brain barrier (BBB) permeability, comparing in vivo MRI to postmortem tissue examination. On average, BBB permeability increased 3.5-fold (p < 0.0001) over the 4 weeks prior to lesion appearance. Permeability gradually decreased after lesion appearance, with attendant changes in the distribution of inflammatory cells (predominantly macrophages and microglia) and demyelination. On tissue analysis, we also identified small perivascular foci of microglia and T cells without blood-derived macrophages or demyelination. These foci had no visible MRI correlates, although permeability within the foci, but not outside, increased in the weeks before the animals died (p < 0.0001). This study provides compelling evidence that in marmoset EAE, which forms lesions strongly resembling those of MS, early changes in vascular permeability are associated with perivascular inflammatory cuffing and parenchymal microglial activation but precede the arrival of blood-derived monocytes that accompany demyelination. Prospective detection of transient permeability changes could afford an opportunity for early intervention to forestall tissue damage in newly forming lesions. © 2014 American Neurological Association.

Measurements of pore-scale flow through apertures

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chojnicki, Kirsten

Pore-scale aperture effects on flow in pore networks was studied in the laboratory to provide a parameterization for use in transport models. Four cases were considered: regular and irregular pillar/pore alignment with and without an aperture. The velocity field of each case was measured and simulated, providing quantitatively comparable results. Two aperture effect parameterizations were considered: permeability and transmission. Permeability values varied by an order of magnitude between the cases with and without apertures. However, transmission did not correlate with permeability. Despite having much greater permeability the regular aperture case permitted less transmission than the regular case. Moreover, both irregularmore » cases had greater transmission than the regular cases, a difference not supported by the permeabilities. Overall, these findings suggest that pore-scale aperture effects on flow though a pore-network may not be adequately captured by properties such as permeability for applications that are interested in determining particle transport volume and timing.« less

Method for directional hydraulic fracturing

DOEpatents

Swanson, David E.; Daly, Daniel W.

1994-01-01

A method for directional hydraulic fracturing using borehole seals to confine pressurized fluid in planar permeable regions, comprising: placing a sealant in the hole of a structure selected from geologic or cemented formations to fill the space between a permeable planar component and the geologic or cemented formation in the vicinity of the permeable planar component; making a hydraulic connection between the permeable planar component and a pump; permitting the sealant to cure and thereby provide both mechanical and hydraulic confinement to the permeable planar component; and pumping a fluid from the pump into the permeable planar component to internally pressurize the permeable planar component to initiate a fracture in the formation, the fracture being disposed in the same orientation as the permeable planar component.

Petrophysics of low-permeability medina sandstone, northwestern Pennsylvania, Appalachian Basin

USGS Publications Warehouse

Castle, J.W.; Byrnes, A.P.

1998-01-01

Petrophysical core testing combined with geophysical log analysis of low-permeability, Lower Silurian sandstones of the Appalachian basin provides guidelines and equations for predicting gas producibility. Permeability values are predictable from the borehole logs by applying empirically derived equations based on correlation between in-situ porosity and in-situ effective gas permeability. An Archie-form equation provides reasonable accuracy of log-derived water saturations because of saturated brine salinities and low clay content in the sands. Although measured porosity and permeability average less than 6% and 0.1 mD, infrequent values as high as 18% and 1,048 mD occur. Values of effective gas permeability at irreducible water saturation (Swi) range from 60% to 99% of routine values for the highest permeability rocks to several orders of magnitude less for the lowest permeability rocks. Sandstones having porosity greater than 6% and effective gas permeability greater than 0.01 mD exhibit Swi less than 20%. With decreasing porosity, Swi sharply increases to values near 40% at 3 porosity%. Analysis of cumulative storage and flow capacity indicates zones with porosity greater than 6% generally contain over 90% of flow capacity and hold a major portion of storage capacity. For rocks with Swi < 20%, gas relative permeabilities exceed 45%. Gas relative permeability and hydrocarbon volume decrease rapidly with increasing Swi as porosity drops below 6%. At Swi above 40%, gas relative permeabilities are less than approximately 10%.

Endothelial permeability is controlled by spatially defined cytoskeletal mechanics: atomic force microscopy force mapping of pulmonary endothelial monolayer.

PubMed

Birukova, Anna A; Arce, Fernando T; Moldobaeva, Nurgul; Dudek, Steven M; Garcia, Joe G N; Lal, Ratnesh; Birukov, Konstantin G

2009-03-01

Actomyosin contraction directly regulates endothelial cell (EC) permeability, but intracellular redistribution of cytoskeletal tension associated with EC permeability is poorly understood. We used atomic force microscopy (AFM), EC permeability assays, and fluorescence microscopy to link barrier regulation, cell remodeling, and cytoskeletal mechanical properties in EC treated with barrier-protective as well as barrier-disruptive agonists. Thrombin, vascular endothelial growth factor, and hydrogen peroxide increased EC permeability, disrupted cell junctions, and induced stress fiber formation. Oxidized 1-palmitoyl-2-arachidonoyl-sn-glycero-3-phosphocholine, hepatocyte growth factor, and iloprost tightened EC barriers, enhanced peripheral actin cytoskeleton and adherens junctions, and abolished thrombin-induced permeability and EC remodeling. AFM force mapping and imaging showed differential distribution of cell stiffness: barrier-disruptive agonists increased stiffness in the central region, and barrier-protective agents decreased stiffness in the center and increased it at the periphery. Attenuation of thrombin-induced permeability correlates well with stiffness changes from the cell center to periphery. These results directly link for the first time the patterns of cell stiffness with specific EC permeability responses.

Microscale diffusion measurements and simulation of a scaffold with a permeable strut.

PubMed

Lee, Seung Youl; Lee, Byung Ryong; Lee, Jongwan; Kim, Seongjun; Kim, Jung Kyung; Jeong, Young Hun; Jin, Songwan

2013-10-10

Electrospun nanofibrous structures provide good performance to scaffolds in tissue engineering. We measured the local diffusion coefficients of 3-kDa FITC-dextran in line patterns of electrospun nanofibrous structures fabricated by the direct-write electrospinning (DWES) technique using the fluorescence recovery after photobleaching (FRAP) method. No significant differences were detected between DWES line patterns fabricated with polymer supplied at flow rates of 0.1 and 0.5 mL/h. The oxygen diffusion coefficients of samples were estimated to be ~92%-94% of the oxygen diffusion coefficient in water based on the measured diffusion coefficient of 3-kDa FITC-dextran. We also simulated cell growth and distribution within spatially patterned scaffolds with struts consisting of either oxygen-permeable or non-permeable material. The permeable strut scaffolds exhibited enhanced cell growth. Saturated depths at which cells could grow to confluence were 15% deeper for the permeable strut scaffolds than for the non-permeable strut scaffold.

Analytical solution for vacuum preloading considering the nonlinear distribution of horizontal permeability within the smear zone.

PubMed

Peng, Jie; He, Xiang; Ye, Hanming

2015-01-01

The vacuum preloading is an effective method which is widely used in ground treatment. In consolidation analysis, the soil around prefabricated vertical drain (PVD) is traditionally divided into smear zone and undisturbed zone, both with constant permeability. In reality, the permeability of soil changes continuously within the smear zone. In this study, the horizontal permeability coefficient of soil within the smear zone is described by an exponential function of radial distance. A solution for vacuum preloading consolidation considers the nonlinear distribution of horizontal permeability within the smear zone is presented and compared with previous analytical results as well as a numerical solution, the results show that the presented solution correlates well with the numerical solution, and is more precise than previous analytical solution.

Analytical solution for vacuum preloading considering the nonlinear distribution of horizontal permeability within the smear zone

PubMed Central

Peng, Jie; He, Xiang; Ye, Hanming

2015-01-01

The vacuum preloading is an effective method which is widely used in ground treatment. In consolidation analysis, the soil around prefabricated vertical drain (PVD) is traditionally divided into smear zone and undisturbed zone, both with constant permeability. In reality, the permeability of soil changes continuously within the smear zone. In this study, the horizontal permeability coefficient of soil within the smear zone is described by an exponential function of radial distance. A solution for vacuum preloading consolidation considers the nonlinear distribution of horizontal permeability within the smear zone is presented and compared with previous analytical results as well as a numerical solution, the results show that the presented solution correlates well with the numerical solution, and is more precise than previous analytical solution. PMID:26447973

Biofilm Effect on Flow Structure over a Permeable Bed

NASA Astrophysics Data System (ADS)

Kazemifar, F.; Blois, G.; Aybar, M.; Perez-Calleja, P.; Nerenberg, R.; Sinha, S.; Hardy, R. J.; Best, J.; Sambrook Smith, G.; Christensen, K. T.

2017-12-01

Biofilms constitute an important form of bacterial life in aquatic environments and are present at the fluid-solid interfaces in natural and industrial settings, such as water distribution systems and riverbeds among others. The permeable, heterogeneous, and deformable structure of biofilms can influence mass and momentum transport between the subsurface and freestream. However, this interaction is not fully understood, in part due to technical obstacles impeding quantitative experimental investigations. In this work, the effect of biofilm on flow structure over a permeable bed is studied. Experiments are conducted in a closed water channel equipped with an idealized two-dimensional permeable bed. Prior to conducting flow experiments, the models are placed within an independent recirculating reactor for biofilm growth. Once a targeted biofilm growth stage is achieved, the models are transferred to the water channel and subjected to transitional and turbulent flows. Long-distance microscopic particle image velocimetry measurements are performed to quantify the effect of biofilm on the turbulence structure of the free flow as well as the freestream-subsurface flow interaction.

Predicting A Drug'S Membrane Permeability: Evolution of a Computational Model Validated with in Vitro Permeability Assay Data

DOE PAGES

Carpenter, Timothy S.; McNerney, M. Windy; Be, Nicholas A.; ...

2016-02-16

Membrane permeability is a key property to consider in drug design, especially when the drugs in question need to cross the blood-brain barrier (BBB). A comprehensive in vivo assessment of the BBB permeability of a drug takes considerable time and financial resources. A current, simplified in vitro model to investigate drug permeability is a Parallel Artificial Membrane Permeability Assay (PAMPA) that generally provides higher throughput and initial quantification of a drug's passive permeability. Computational methods can also be used to predict drug permeability. Our methods are highly advantageous as they do not require the synthesis of the desired drug, andmore » can be implemented rapidly using high-performance computing. In this study, we have used umbrella sampling Molecular Dynamics (MD) methods to assess the passive permeability of a range of compounds through a lipid bilayer. Furthermore, the permeability of these compounds was comprehensively quantified using the PAMPA assay to calibrate and validate the MD methodology. And after demonstrating a firm correlation between the two approaches, we then implemented our MD method to quantitatively predict the most permeable potential drug from a series of potential scaffolds. This permeability was then confirmed by the in vitro PAMPA methodology. Therefore, in this work we have illustrated the potential that these computational methods hold as useful tools to help predict a drug's permeability in a faster and more cost-effective manner. Release number: LLNL-ABS-677757.« less

Predicting A Drug'S Membrane Permeability: Evolution of a Computational Model Validated with in Vitro Permeability Assay Data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carpenter, Timothy S.; McNerney, M. Windy; Be, Nicholas A.

Membrane permeability is a key property to consider in drug design, especially when the drugs in question need to cross the blood-brain barrier (BBB). A comprehensive in vivo assessment of the BBB permeability of a drug takes considerable time and financial resources. A current, simplified in vitro model to investigate drug permeability is a Parallel Artificial Membrane Permeability Assay (PAMPA) that generally provides higher throughput and initial quantification of a drug's passive permeability. Computational methods can also be used to predict drug permeability. Our methods are highly advantageous as they do not require the synthesis of the desired drug, andmore » can be implemented rapidly using high-performance computing. In this study, we have used umbrella sampling Molecular Dynamics (MD) methods to assess the passive permeability of a range of compounds through a lipid bilayer. Furthermore, the permeability of these compounds was comprehensively quantified using the PAMPA assay to calibrate and validate the MD methodology. And after demonstrating a firm correlation between the two approaches, we then implemented our MD method to quantitatively predict the most permeable potential drug from a series of potential scaffolds. This permeability was then confirmed by the in vitro PAMPA methodology. Therefore, in this work we have illustrated the potential that these computational methods hold as useful tools to help predict a drug's permeability in a faster and more cost-effective manner. Release number: LLNL-ABS-677757.« less

Large-scale model of flow in heterogeneous and hierarchical porous media

NASA Astrophysics Data System (ADS)

Chabanon, Morgan; Valdés-Parada, Francisco J.; Ochoa-Tapia, J. Alberto; Goyeau, Benoît

2017-11-01

Heterogeneous porous structures are very often encountered in natural environments, bioremediation processes among many others. Reliable models for momentum transport are crucial whenever mass transport or convective heat occurs in these systems. In this work, we derive a large-scale average model for incompressible single-phase flow in heterogeneous and hierarchical soil porous media composed of two distinct porous regions embedding a solid impermeable structure. The model, based on the local mechanical equilibrium assumption between the porous regions, results in a unique momentum transport equation where the global effective permeability naturally depends on the permeabilities at the intermediate mesoscopic scales and therefore includes the complex hierarchical structure of the soil. The associated closure problem is numerically solved for various configurations and properties of the heterogeneous medium. The results clearly show that the effective permeability increases with the volume fraction of the most permeable porous region. It is also shown that the effective permeability is sensitive to the dimensionality spatial arrangement of the porous regions and in particular depends on the contact between the impermeable solid and the two porous regions.

From mitochondrial large amplitude swelling to the permeability transition - a short historic overview.

PubMed

Wojtczak, Lech; Więckowski, Mariusz R

An outline of studies on the mitochondrial large conductance permeability pore is presented starting from the early observations in the 1950s on the large amplitude mitochondrial swelling, through the concept of the permeability transition and various theories on the structure of the related permeability transition pore, up to its present identification as a part of mitochondrial (F 1 F O ) ATPase/ATP synthase.

Gating connexin 43 channels reconstituted in lipid vesicles by mitogen-activated protein kinase phosphorylation.

PubMed

Kim, D Y; Kam, Y; Koo, S K; Joe, C O

1999-02-26

The regulation of gap junctional permeability by phosphorylation was examined in a model system in which connexin 43 (Cx43) gap junction hemichannels were reconstituted in lipid vesicles. Cx43 was immunoaffinity-purified from rat brain, and Cx43 channels were reconstituted into unilamellar phospholipid liposomes. The activities of the reconstituted channels were measured by monitoring liposome permeability. Liposomes containing the Cx43 protein were fractionated on the basis of permeability to sucrose using sedimentation in an iso-osmolar density gradient. The gradient allowed separation of the sucrose-permeable and -impermeable liposomes. Liposomes that were permeable to sucrose were also permeable to the communicating dye molecule lucifer yellow. Permeability, and therefore activity of the reconstituted Cx43 channels, were directly dependent on the state of Cx43 phosphorylation. The permeability of liposomes containing Cx43 channels was increased by treatment of liposomes with calf intestinal phosphatase. Moreover, liposomes formed with Cx43 that had been dephosphorylated by calf intestinal phosphatase treatment showed increased permeability to sucrose. The role of phosphorylation in the gating mechanism of Cx43 channels was supported further by the observation that phosphorylation of Cx43 by mitogen-activated protein kinase reversibly reduced the permeability of liposomes containing dephosphorylated Cx43. Our results show a direct correlation between gap junctional permeability and the phosphorylation state of Cx43.

Pig and guinea pig skin as surrogates for human in vitro penetration studies: a quantitative review.

PubMed

Barbero, Ana M; Frasch, H Frederick

2009-02-01

Both human and animal skin in vitro models are used to predict percutaneous penetration in humans. The objective of this review is a quantitative comparison of permeability and lag time measurements between human and animal skin, including an evaluation of the intra and inter species variability. We limit our focus to domestic pig and rodent guinea pig skin as surrogates for human skin, and consider only studies in which both animal and human penetration of a given chemical were measured jointly in the same lab. When the in vitro permeability of pig and human skin were compared, the Pearson product moment correlation coefficient (r) was 0.88 (P<0.0001), with an intra species average coefficient of variation of skin permeability of 21% for pig and 35% for human, and an inter species average coefficient of variation of 37% for the set of studied compounds (n=41). The lag times of pig skin and human skin did not correlate (r=0.35, P=0.26). When the in vitro permeability of guinea pig and human skin were compared, r=0.96 (P<0.0001), with an average intra species coefficient of variation of 19% for guinea pig and 24% for human, and an inter species coefficient of variation of permeability of 41% for the set of studied compounds (n=15). Lag times of guinea pig and human skin correlated (r=0.90, P<0.0001, n=12). When permeability data was not reported a factor of difference (FOD) of animal to human skin was calculated for pig skin (n=50) and guinea pig skin (n=25). For pig skin, 80% of measurements fell within the range 0.3

Investigation of negative permeability metamaterials for wireless power transfer

NASA Astrophysics Data System (ADS)

Xin, Wenhui; Mi, Chunting Chris; He, Fei; Jiang, Meng; Hua, Dengxin

2017-11-01

In order to enhance the transmission efficiency of wireless power transfer (WPT), a negative permeability metamaterials (NPM) with a structure of honeycomb composed by units of hexagon-shaped spirals copper is proposed in this paper. The unit parameters of the NPM are optimized, to make sure the negative permeability at the special frequency. The S-parameters of the designed NPM are measured by a network analyzer and the permeability is extracted, it shows the honeycomb NPM has a negative permeability at 6.43 MHz. A two-coil WPT is setup and the transmission efficiency of WPT embedded with NPM at the different position and with different structure are investigated. The measured results show that the 2-slab honeycomb NPM have a good perform compared with the 1-slab NPM, and the efficiency can be increased up to 51%. The results show that honeycomb NPM embedded in the WPT help to improve the transmission efficiency remarkable.

Optimizing solubility and permeability of a biopharmaceutics classification system (BCS) class 4 antibiotic drug using lipophilic fragments disturbing the crystal lattice.

PubMed

Tehler, Ulrika; Fagerberg, Jonas H; Svensson, Richard; Larhed, Mats; Artursson, Per; Bergström, Christel A S

2013-03-28

Esterification was used to simultaneously increase solubility and permeability of ciprofloxacin, a biopharmaceutics classification system (BCS) class 4 drug (low solubility/low permeability) with solid-state limited solubility. Molecular flexibility was increased to disturb the crystal lattice, lower the melting point, and thereby improve the solubility, whereas lipophilicity was increased to enhance the intestinal permeability. These structural changes resulted in BCS class 1 analogues (high solubility/high permeability) emphasizing that simple medicinal chemistry may improve both these properties.

Numerical analysis of the impact of permeability on trailing-edge noise

NASA Astrophysics Data System (ADS)

Koh, Seong Ryong; Meinke, Matthias; Schröder, Wolfgang

2018-05-01

The impact of porous surfaces on the near-wall turbulent structures and the generated trailing-edge noise is analyzed for several trailing-edge shapes of finite thickness using a high resolution large-eddy simulation (LES)/computational aeroacoustics (CAA) method. The porous surface of the trailing edge is defined by the porosity and the viscous permeability determined by the solution of a turbulent flat plate boundary layer at a Reynolds number 1280 based on the displacement thickness in the inflow cross section. The volume-averaged approach for the homogeneous porous medium shows that the porous impedance scales linearly with the porosity and exponentially with the mean structure size of a porous medium. The drag induced by the porous surface changes the friction velocity and the permeability Reynolds number ReK which determines the porous impedance Rs scaled by ReK-2/3. The trailing-edge noise is analyzed for three solid and three porous trailing edges. The effect of a finite span is investigated by the spanwise correlation model based on the measured coherence distribution. The acoustic prediction shows a good agreement with measurements of the broadband spectrum and the strong tone generated by a finite trailing-edge thickness. The pressure gradient inside the porous media is redistributed by the Darcy drag defined by the viscous permeability and the porosity. The mean pressure increases in the upstream direction inside the porous medium such that the flow acceleration involved in the acoustic generation is reduced inside the porous medium. The noise reduction by a porous medium reaches 11 dB for the trailing-edge shape which possesses a sharp corner for the solid surface. The porous surface applied to a semi-circular trailing edge achieves a 4 dB noise reduction. The directivity pattern for individual components of the acoustic spectrum shows that the massive noise reduction is determined at the tone. Enhanced wave diffraction by the thick flat plate changes the directivity pattern in the high frequency range.

Resin Film Infusion (RFI) Process Modeling for Large Transport Aircraft Wing Structures

NASA Technical Reports Server (NTRS)

Knott, Tamara W.; Loos, Alfred C.

2000-01-01

Resin film infusion (RFI) is a cost-effective method for fabricating stiffened aircraft wing structures. The RFI process lends itself to the use of near net shape textile preforms manufactured through a variety of automated textile processes such as knitting and braiding. Often, these advanced fiber architecture preforms have through-the-thickness stitching for improved damage tolerance and delamination resistance. The challenge presently facing RFI is to refine the process to ensure complete infiltration and cure of a geometrically complex shape preform with the high fiber volume fraction needed for structural applications. An accurate measurement of preform permeability is critical for successful modeling of the RFI resin infiltration process. Small changes in the permeability can result in very different infiltration behavior and times. Therefore, it is important to accurately measure the permeabilities of the textile preforms used in the RFI process. The objective of this investigation was to develop test methods that can be used to measure the compaction behavior and permeabilities of high fiber volume fraction, advanced fiber architecture textile preforms. These preforms are often highly compacted due to through-the-thickness stitching used to improve damage tolerance. Test fixtures were designed and fabricated and used to measure both transverse and in-plane permeabilities. The fixtures were used to measure the permeabilities of multiaxial warp knit and triaxial braided preforms at fiber volume fractions from 55% to 65%. In addition, the effects of stitching characteristics, thickness, and batch variability on permeability and compaction behavior were investigated.

Control of the permeability loss-peak frequency of Ni81Fe19 thin films through laser ablation of triangular and square cluster geometries

NASA Technical Reports Server (NTRS)

Grimes, C. A.; Lumpp, J. K.

2000-01-01

Laser ablation arrays of triangular and square shaped clusters, comprised of 23 micrometers diam circular holes, are defined upon 100 nm thick Ni81Fe19 films used to control the rf permeability spectra. Cluster-to-cluster spacing is varied from 200 to 600 micrometers. For each geometry it is found that the loss peak frequency and permeability magnitude shift lower, in a step-wise fashion, at a cluster-to-cluster spacing between 275 and 300 micrometers. The nonlinear shift in the behavior of the permeability spectra correlates with a dramatic increase in domain wall density. c2000 American Institute of Physics.

Mimicking brain tissue binding in an in vitro model of the blood-brain barrier illustrates differences between in vitro and in vivo methods for assessing the rate of brain penetration.

PubMed

Heymans, Marjolein; Sevin, Emmanuel; Gosselet, Fabien; Lundquist, Stefan; Culot, Maxime

2018-06-01

Assessing the rate of drug delivery to the central nervous system (CNS) in vitro has been used for decades to predict whether CNS drug candidates are likely to attain their pharmacological targets, located within the brain parenchyma, at an effective dose. The predictive value of in vitro blood-brain barrier (BBB) models is therefore frequently assessed by comparing in vitro BBB permeability, usually quoted as the endothelial permeability coefficient (P e ) or apparent permeability (P app ), to their rate of BBB permeation measured in vivo, the latter being commonly assessed in rodents. In collaboration with AstraZeneca (DMPK department, Södertälje, Sweden), the in vitro BBB permeability (P app and P e ) of 27 marketed CNS drugs has been determined using a bovine in vitro BBB model and compared to their in vivo permeability (P vivo ), obtained by rat in-situ brain perfusion. The latter was taken from published data from Summerfield et al. (2007). This comparison confirmed previous reports, showing a strong in vitro/in vivo correlation for hydrophilic compounds, characterized by low brain tissue binding and a weak correlation for lipophilic compounds, characterized by high brain tissue binding. This observation can be explained by the influence of brain tissue binding on the uptake of drugs into the CNS in vivo and the absence of possible brain tissue binding in vitro. The use of glial cells (GC) in the in vitro BBB model to mimic brain tissue binding and the introduction of a new calculation method for in vitro BBB permeability (P vitro ) resulted in a strong correlation between the in vitro and in vivo rate of BBB permeation for the whole set of compounds. These findings might facilitate further in vitro to in vivo extrapolation for CNS drug candidates. Copyright © 2018 The Authors. Published by Elsevier B.V. All rights reserved.

Automated Coastal Engineering System: Technical Reference

DTIC Science & Technology

1992-09-01

of Contents ACES Technical Reference Wave Transmission Through Permeable Structures ..................................... 5-4 Littoral Processes...A-2 Table A-4: Grain-Size Scales ( Soil Classification) ..................................... A-3 Table A-5: Major Tidal Constituents... Permeable Structures Lonphore Sediment Tranaport Littoral Numerical Si~ulation of Time-Dependent Beach and Dune Erosion Processes Calculation of Composite

Fully coupled two-phase flow and poromechanics modeling of coalbed methane recovery: Impact of geomechanics on production rate

DOE PAGES

Ma, Tianran; Rutqvist, Jonny; Oldenburg, Curtis M.; ...

2017-06-03

This study presents the development and application of a fully coupled two-phase (methane and water) flow, transport, and poromechanics num erical model for the analysis of geomechanical impacts on coalbed methane (CBM) production. The model considers changes in two-phase fluid flow properties, i.e., coal porosity, permeability, water retention, and relative permeability curves through changes in cleat fractures induced by effective stress variations and desorption-induced shrinkage. The coupled simulator is first verified for poromechanics coupling, and simulation parameters of a CBM reservoir model are calibrated by history matching against one year of CBM production field data from Shanxi Province, China. Then,more » the verified simulator and the calibrated CBM reservoir model are used for predicting the impact of geomechanics on the production rate for twenty years of continuous CBM production. The simulation results show that desorption-induced shrinkage is the dominant process in increasing permeability in the near wellbore region. Away from the wellbore, desorption-induced shrinkage is weaker, and permeability is reduced by pressure depletion and increased effective stress. A sensitivity analysis shows that for coal with a higher sorption strain, a larger initial Young's modulus and a smaller Poisson's ratio promote the enhancement of permeability as well as an increased production rate. Moreover, the conceptual model of the cleat system, whether dominated by vertical cleats with permeability correlated to horizontal stress or with permeability correlated to mean stress, can have a significant impact on the predicted production rate. Overall, the study clearly demonstrates and confirms the critical importance of considering geomechanics for an accurate prediction of CBM production.« less

Fully coupled two-phase flow and poromechanics modeling of coalbed methane recovery: Impact of geomechanics on production rate

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ma, Tianran; Rutqvist, Jonny; Oldenburg, Curtis M.

This study presents the development and application of a fully coupled two-phase (methane and water) flow, transport, and poromechanics num erical model for the analysis of geomechanical impacts on coalbed methane (CBM) production. The model considers changes in two-phase fluid flow properties, i.e., coal porosity, permeability, water retention, and relative permeability curves through changes in cleat fractures induced by effective stress variations and desorption-induced shrinkage. The coupled simulator is first verified for poromechanics coupling, and simulation parameters of a CBM reservoir model are calibrated by history matching against one year of CBM production field data from Shanxi Province, China. Then,more » the verified simulator and the calibrated CBM reservoir model are used for predicting the impact of geomechanics on the production rate for twenty years of continuous CBM production. The simulation results show that desorption-induced shrinkage is the dominant process in increasing permeability in the near wellbore region. Away from the wellbore, desorption-induced shrinkage is weaker, and permeability is reduced by pressure depletion and increased effective stress. A sensitivity analysis shows that for coal with a higher sorption strain, a larger initial Young's modulus and a smaller Poisson's ratio promote the enhancement of permeability as well as an increased production rate. Moreover, the conceptual model of the cleat system, whether dominated by vertical cleats with permeability correlated to horizontal stress or with permeability correlated to mean stress, can have a significant impact on the predicted production rate. Overall, the study clearly demonstrates and confirms the critical importance of considering geomechanics for an accurate prediction of CBM production.« less

Characterization of articular cartilage by combining microscopic analysis with a fibril-reinforced finite-element model.

PubMed

Julkunen, Petro; Kiviranta, Panu; Wilson, Wouter; Jurvelin, Jukka S; Korhonen, Rami K

2007-01-01

Load-bearing characteristics of articular cartilage are impaired during tissue degeneration. Quantitative microscopy enables in vitro investigation of cartilage structure but determination of tissue functional properties necessitates experimental mechanical testing. The fibril-reinforced poroviscoelastic (FRPVE) model has been used successfully for estimation of cartilage mechanical properties. The model includes realistic collagen network architecture, as shown by microscopic imaging techniques. The aim of the present study was to investigate the relationships between the cartilage proteoglycan (PG) and collagen content as assessed by quantitative microscopic findings, and model-based mechanical parameters of the tissue. Site-specific variation of the collagen network moduli, PG matrix modulus and permeability was analyzed. Cylindrical cartilage samples (n=22) were harvested from various sites of the bovine knee and shoulder joints. Collagen orientation, as quantitated by polarized light microscopy, was incorporated into the finite-element model. Stepwise stress-relaxation experiments in unconfined compression were conducted for the samples, and sample-specific models were fitted to the experimental data in order to determine values of the model parameters. For comparison, Fourier transform infrared imaging and digital densitometry were used for the determination of collagen and PG content in the same samples, respectively. The initial and strain-dependent fibril network moduli as well as the initial permeability correlated significantly with the tissue collagen content. The equilibrium Young's modulus of the nonfibrillar matrix and the strain dependency of permeability were significantly associated with the tissue PG content. The present study demonstrates that modern quantitative microscopic methods in combination with the FRPVE model are feasible methods to characterize the structure-function relationships of articular cartilage.

Practical characterization of eolian reservoirs for development: Nugget Sandstone, Utah—Wyoming thrust belt

NASA Astrophysics Data System (ADS)

Lindquist, Sandra J.

1988-04-01

The Jurassic eolian Nugget Sandstone of the Utah-Wyoming thrust belt is a texturally heterogeneous formation with anisotropic reservoir inherited primarily from the depositional environment. Original reservoir quality has been reduced somewhat by cementation and slightly enhanced by dissolution. Low-permeability, gouge-filled micro-faults compartmentalize the formation, whereas intermittently open fractures provide effective permeability paths locally. Where productive, the Nugget Sandstone ranges from approximately 800 to 1050 ft (244-320 m) thick at subsurface depths of 7500 to 15,000 ft (2286-4572 m). Porosity ranges from several percent to 25%, and permeability covers five orders of magnitude from hundredths of milliDarcies to Darcies. Some Nugget reservoirs are fully charged with hydrocarbons. Different stratification types have unique depositional textures, primary and diagenetic mineralogies, and deformational fabrics resulting in characteristic porosity, permeability, permeability directionality, and pore geometry attributes. Such characteristics can be determined from core analysis, mercury injection, nuclear magnetic resonance, conventional log, dipmeter and production data. Nugget dune deposits (good reservoir facies) primarily consist of grainflow and wind-ripple cross-strata, the former of which have the better reservoir quality and the lesser heterogeneity in bedding texture. High-permeability facies are commonly affected by local quartz and nodular carbonate cementation, chlorite (and lesser illite) precipitation, and minor framework and cement dissolution. Gouge-filled micro-faults are the predominant deformational overprint. Interdune, sand-sheet, and other water-associated deposits (poor reservoir facies) are characterized by low-angle wind-ripple laminae and more irregular bedding, some of which is associated with damp or wet conditions. Water-associated Nugget stratification generally contains the finest grained depositional textures and has the poorest reservoir properties. These non-dune facies contain intergranular micritic carbonate and illite precipitates and are most affected by compaction and pressure solution phenomena. Open types of fractures are somewhat more likely in this lower permeability rock. Depositional models incorporating dune morphologies, facies distribution, permeability directionality, and theoretical concepts regarding dune migration through time are useful in delineating correlative intervals most likely to have continuity and potential communication of reservoir properties. Stratigraphic models can be adapted for reservoir simulation studies and also can be utilized in solving structural resolution problems if correlatable vertical sequences and relatively consistent cross-strata orientations exist.

Internal architecture, permeability structure, and hydrologic significance of contrasting fault-zone types

NASA Astrophysics Data System (ADS)

Rawling, Geoffrey C.; Goodwin, Laurel B.; Wilson, John L.

2001-01-01

The Sand Hill fault is a steeply dipping, large-displacement normal fault that cuts poorly lithified Tertiary sediments of the Albuquerque basin, New Mexico, United States. The fault zone does not contain macroscopic fractures; the basic structural element is the deformation band. The fault core is composed of foliated clay flanked by structurally and lithologically heterogeneous mixed zones, in turn flanked by damage zones. Structures present within these fault-zone architectural elements are different from those in brittle faults formed in lithified sedimentary and crystalline rocks that do contain fractures. These differences are reflected in the permeability structure of the Sand Hill fault. Equivalent permeability calculations indicate that large-displacement faults in poorly lithified sediments have little potential to act as vertical-flow conduits and have a much greater effect on horizontal flow than faults with fractures.

[Adaptive reactions of students from mountain and plain regions of Latin America to conditions of middle Russia].

PubMed

Ermakova, N V

2003-01-01

This article contains results of the comparative study of the functional state of respiratory and cardiovascular systems of almost healthy students (man) of age 19-22, inhabitants of mountain and plain regions of Latin America during their adaptation to the conditions of middle Russia. We have established that there are reliable distinctions in the functional state of cardio-respiratory system of students from mountain and plain regions of Latin America. So for representatives of mountain regions of LA were typical higher indicators of vital capacity, permeability of large and medium bronchial tubes, stroke volume, lower indicators of heart rate, systolic arterial pressure, myocard tension index, but higher coefficient of myocard efficiency than for inhabitants the plain. Considerable distinctions have been observed also in the intercommunication between different indicators. There have been marked considerable correlation connections between small bronchial tubes permeability and cardiovascular system indicators for plain inhabitants. For mountain regions inhabitants almost every indicator of bronchial tubes permeability correlate reliably with vital capacity, but didn't correlate with hemodynamics indicators.

Defining clogging potential for permeable concrete.

PubMed

Kia, Alalea; Wong, Hong S; Cheeseman, Christopher R

2018-08-15

Permeable concrete is used to reduce urban flooding as it allows water to flow through normally impermeable infrastructure. It is prone to clogging by particulate matter and predicting the long-term performance of permeable concrete is challenging as there is currently no reliable means of characterising clogging potential. This paper reports on the performance of a range of laboratory-prepared and commercial permeable concretes, close packed glass spheres and aggregate particles of varying size, exposed to different clogging methods to understand this phenomena. New methods were developed to study clogging and define clogging potential. The tests involved applying flowing water containing sand and/or clay in cycles, and measuring the change in permeability. Substantial permeability reductions were observed in all samples, particularly when exposed to sand and clay simultaneously. Three methods were used to define clogging potential based on measuring the initial permeability decay, half-life cycle and number of cycles to full clogging. We show for the first time strong linear correlations between these parameters for a wide range of samples, indicating their use for service-life prediction. Copyright © 2018 Elsevier Ltd. All rights reserved.

Permeability Estimation Directly From Logging-While-Drilling Induced Polarization Data

NASA Astrophysics Data System (ADS)

Fiandaca, G.; Maurya, P. K.; Balbarini, N.; Hördt, A.; Christiansen, A. V.; Foged, N.; Bjerg, P. L.; Auken, E.

2018-04-01

In this study, we present the prediction of permeability from time domain spectral induced polarization (IP) data, measured in boreholes on undisturbed formations using the El-log logging-while-drilling technique. We collected El-log data and hydraulic properties on unconsolidated Quaternary and Miocene deposits in boreholes at three locations at a field site in Denmark, characterized by different electrical water conductivity and chemistry. The high vertical resolution of the El-log technique matches the lithological variability at the site, minimizing ambiguity in the interpretation originating from resolution issues. The permeability values were computed from IP data using a laboratory-derived empirical relationship presented in a recent study for saturated unconsolidated sediments, without any further calibration. A very good correlation, within 1 order of magnitude, was found between the IP-derived permeability estimates and those derived using grain size analyses and slug tests, with similar depth trends and permeability contrasts. Furthermore, the effect of water conductivity on the IP-derived permeability estimations was found negligible in comparison to the permeability uncertainties estimated from the inversion and the laboratory-derived empirical relationship.

Evaluation of surface resistivity measurements as an alternative to the rapid chloride permeability test for quality assurance and acceptance : LTRC research project capsule 10-1C.

DOT National Transportation Integrated Search

2010-02-01

Many entities currently use permeability specifications in Portland cement : concrete (PCC) pavements and structures. For those states using : permeability specifications, two test methods are generally used and include : ASTM C 1202 (Standard Test M...

Hierarchical tailoring of strut architecture to control permeability of additive manufactured titanium implants.

PubMed

Zhang, Z; Jones, D; Yue, S; Lee, P D; Jones, J R; Sutcliffe, C J; Jones, E

2013-10-01

Porous titanium implants are a common choice for bone augmentation. Implants for spinal fusion and repair of non-union fractures must encourage blood flow after implantation so that there is sufficient cell migration, nutrient and growth factor transport to stimulate bone ingrowth. Additive manufacturing techniques allow a large number of pore network designs. This study investigates how the design factors offered by selective laser melting technique can be used to alter the implant architecture on multiple length scales to control and even tailor the flow. Permeability is a convenient parameter that characterises flow, correlating to structure openness (interconnectivity and pore window size), tortuosity and hence flow shear rates. Using experimentally validated computational simulations, we demonstrate how additive manufacturing can be used to tailor implant properties by controlling surface roughness at a microstructual level (microns), and by altering the strut ordering and density at a mesoscopic level (millimetre). Copyright © 2013 The Authors. Published by Elsevier B.V. All rights reserved.

Flowmeter and Ground Penetrating Radar: comparison between hydrogeological and geophysical methods

NASA Astrophysics Data System (ADS)

Villa, A.; Basirico', S.; Arato, A.; Crosta, G. B.; Frattini, P.; Godio, A.

2012-04-01

A comparison between saturated hydraulic conductivity calculated with Electromagnetic Borehole Flowmeter (EBF) and water content obtained by Ground Penetrating Radar (GPR) Zero Offset Profile (ZOP) is presented. EBF technique permits to obtain permeability profiles along one borehole in the saturated zone by using the Moltz (1993) method. The analysis of ZOP data provides information about the water content (Topp, 1980) in the section between two adjacent boreholes. Water content profiles in the saturated zone can be related to the porosity of the medium which, together with the permeability from EBF measurements, is fundamental for any hydrogeological characterization. These two methods have been applied to three different test-sites located in the Northern Italy. A first site regards a complex aquifer, characterized by a chaotic sequence of gypsum-marls. The other two sites are characterized by an alternation of sandy and silty-sandy layers. For each site, we adopted the EBF along screened boreholes with 0.25 m spacing, under ambient and stressed conditions. The cross-hole georadar survey was performed within the saturated zone by using 100 Hz borehole antennas with 0.25 m spacing. The results from the analysis of EBF and ZOP profiles show a general positive correlation between permeability and water content and porosity. This is reasonable for granular soils where the permeability is controlled by the pore space available for water flow, i.e., the effective porosity. For this soils, where EBF permeability and ZOP water-content profiles are in good agreement, the volume between the boreholes can be supposed to be homogeneous. On the other hand, a poor correlation suggests the presence of heterogeneity between the boreholes, which can be observed because the two techniques involve different volumes of soil: the EBF permeability refers to a portion of volume just around the borehole while the ZOP investigates the entire volume between the two boreholes. The poor correlation could be enhanced when enlarging the borehole separation, because the difference in the involved volume between the two techniques increases. Finally, the degree of correlation between the EBF permeability profile and the ZOP water content profile can indicate how much the volume investigated by EBF is effectively representative of the entire volume between the boreholes. Molz, F.J. and S.C. Young, 1993. Development and Application of Borehole Flowmeters for Environmental Assessment, The Log Analyst, 13-23. Topp G.C., J.L. Davis and A.P. Annan, 1980. Electromagnetic determination of soil water content: measurements in coaxial transmission lines, Water Resources Research, 16, 574-582.

Laboratory measurements of shock propagation through spherical cavities in an optically accessible polymer.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chojnicki, Kirsten; Cooper, Marcia A.; Guo, Shuyue

Pore-scale aperture effects on flow in pore networks was studied in the laboratory to provide a parameterization for use in transport models. Four cases were considered: regular and irregular pillar/pore alignment with and without an aperture. The velocity field of each case was measured and simulated, providing quantitatively comparable results. Two aperture effect parameterizations were considered: permeability and transmission. Permeability values varied by an order of magnitude between the cases with and without apertures. However, transmission did not correlate with permeability. Despite having much greater permeability the regular aperture case permitted less transmission than the regular case. Moreover, both irregularmore » cases had greater transmission than the regular cases, a difference not supported by the permeabilities. Overall, these findings suggest that pore-scale aperture effects on flow though a pore-network may not be adequately captured by properties such as permeability for applications that are interested in determining particle transport volume and timing.« less

Hydrotropic Solubilization of Lipophilic Drugs for Oral Delivery: The Effects of Urea and Nicotinamide on Carbamazepine Solubility–Permeability Interplay

PubMed Central

Beig, Avital; Lindley, David; Miller, Jonathan M.; Agbaria, Riad; Dahan, Arik

2016-01-01

Hydrotropy refers to increasing the water solubility of otherwise poorly soluble compound by the presence of small organic molecules. While it can certainly increase the apparent solubility of a lipophilic drug, the effect of hydrotropy on the drugs’ permeation through the intestinal membrane has not been studied. The purpose of this work was to investigate the solubility–permeability interplay when using hydrotropic drug solubilization. The concentration-dependent effects of the commonly used hydrotropes urea and nicotinamide, on the solubility and the permeability of the lipophilic antiepileptic drug carbamazepine were studied. Then, the solubility–permeability interplay was mathematically modeled, and was compared to the experimental data. Both hydrotropes allowed significant concentration-dependent carbamazepine solubility increase (up to ∼30-fold). A concomitant permeability decrease was evident both in vitro and in vivo (∼17-fold for nicotinamide and ∼9-fold for urea), revealing a solubility–permeability tradeoff when using hydrotropic drug solubilization. A relatively simplified simulation approach based on proportional opposite correlation between the solubility increase and the permeability decrease at a given hydrotrope concentration allowed excellent prediction of the overall solubility–permeability tradeoff. In conclusion, when using hydrotropic drug solubilization it is prudent to not focus solely on solubility, but to account for the permeability as well; achieving optimal solubility–permeability balance may promote the overall goal of the formulation to maximize oral drug exposure. PMID:27826241

Variation and correlation of hydrologic properties

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, J.S.Y.

1991-06-01

Hydrological properties vary within a given geological formation and even more so among different soil and rock media. The variance of the saturated permeability is shown to be related to the variance of the pore-size distribution index of a given medium by a simple equation. This relationship is deduced by comparison of the data from Yucca Mountain, Nevada (Peters et al., 1984), Las Cruces, New Mexico (Wierenga et al., 1989), and Apache Leap, Arizona (Rasmussen et al., 1990). These and other studies in different soils and rocks also support the Poiseuille-Carmen relationship between the mean value of saturated permeability andmore » the mean value of capillary radius. Correlations of the mean values and variances between permeability and pore-geometry parameters can lead us to better quantification of heterogeneous flow fields and better understanding of the scaling laws of hydrological properties.« less

Generation, Analysis and Characterization of Anisotropic Engineered Meta Materials

NASA Astrophysics Data System (ADS)

Trifale, Ninad T.

A methodology for a systematic generation of highly anisotropic micro-lattice structures was investigated. Multiple algorithms for generation and validation of engineered structures are developed and evaluated. Set of all possible permutations of structures for an 8-node cubic unit cell were considered and the degree of anisotropy of meta-properties in heat transport and mechanical elasticity were evaluated. Feasibility checks were performed to ensure that the generated unit cell network was repeatable and a continuous lattice structure. Four different strategies for generating permutations of the structures are discussed. Analytical models were developed to predict effective thermal, mechanical and permeability characteristics of these cellular structures.Experimentation and numerical modeling techniques were used to validate the models that are developed. A self-consistent mechanical elasticity model was developed which connects the meso-scale properties to stiffness of individual struts. A three dimensional thermal resistance network analogy was used to evaluate the effective thermal conductivity of the structures. The struts were modeled as a network of one dimensional thermal resistive elements and effective conductivity evaluated. Models were validated against numerical simulations and experimental measurements on 3D printed samples. Model was developed to predict effective permeability of these engineered structures based on Darcy's law. Drag coefficients were evaluated for individual connections in transverse and longitudinal directions and an interaction term was calibrated from the experimental data in literature in order to predict permeability. Generic optimization framework coupled to finite element solver is developed for analyzing any application involving use of porous structures. An objective functions were generated structure to address frequently observed trade-off between the stiffness, thermal conductivity, permeability and porosity. Three application were analyzed for potential use of engineered materials. Heat spreader application involving thermal and mechanical constraints, artificial bone grafts application involving mechanical and permeability constraints and structural materials applications involving mechanical, thermal and porosity constraints is analyzed. Recommendations for optimum topologies for specific operating conditions are provided.

Permeability measurement and control for epoxy composites

NASA Astrophysics Data System (ADS)

Chang, Tsun-Hsu; Tsai, Cheng-Hung; Wong, Wei-Syuan; Chen, Yen-Ren; Chao, Hsien-Wen

2017-08-01

The coupling of the electric and magnetic fields leads to a strong interplay in materials' permittivity and permeability. Here, we proposed a specially designed cavity, called the mu cavity. The mu cavity, consisting of a mushroom structure inside a cylindrical resonator, is exclusively sensitive to permeability, but not to permittivity. It decouples materials' electromagnetic properties and allows an accurate measurement of the permeability. With the help of an epsilon cavity, these two cavities jointly determine the complex permeability and permittivity of the materials at microwave frequencies. Homemade epoxy-based composite materials were prepared and tested. Measurement and manipulation of the permeability and permittivity of the epoxy composites will be shown. The results will be compared with the effective medium theories.

Biofilm effect on flow structure over a permeable bed

NASA Astrophysics Data System (ADS)

Kazemifar, Farzan; Blois, Gianluca; Aybar, Marcelo; Perez-Calleja, Patricia; Nerenberg, Robert; Sinha, Sumit; Hardy, Richard; Best, James; Sambrook Smith, Gregory; Christensen, Kenneth

2017-11-01

Biofilms constitute an important form of bacterial life in aquatic environments and are present at the fluid-solid interfaces in natural and industrial settings, such as water distribution systems and riverbeds among others. The permeable, heterogeneous, and deformable structure of biofilms can influence mass and momentum transport between the subsurface and freestream. However, this interaction is not fully understood, in part due to technical obstacles impeding quantitative experimental investigations. In this work, the effect of biofilm on flow structure over a permeable bed is studied. Experiments are conducted in a closed water channel equipped with an idealized two-dimensional permeable bed. Prior to conducting flow experiments, the models are placed within an independent recirculating reactor for biofilm growth. Once a targeted biofilm growth stage is achieved, the models are transferred to the water channel and subjected to transitional and turbulent flows. Long-distance microscopic particle image velocimetry measurements are performed to quantify the effect of biofilm on the turbulence structure of the free flow as well as the freestream-subsurface flow interaction. Funded by UK Natural Environment Research Council.

The solubility-permeability interplay and its implications in formulation design and development for poorly soluble drugs.

PubMed

Dahan, Arik; Miller, Jonathan M

2012-06-01

While each of the two key parameters of oral drug absorption, the solubility and the permeability, has been comprehensively studied separately, the relationship and interplay between the two have been largely ignored. For instance, when formulating a low-solubility drug using various solubilization techniques: what are we doing to the apparent permeability when we increase the solubility? Permeability is equal to the drug's diffusion coefficient through the membrane times the membrane/aqueous partition coefficient divided by the membrane thickness. The direct correlation between the intestinal permeability and the membrane/aqueous partitioning, which in turn is dependent on the drug's apparent solubility in the GI milieu, suggests that the solubility and the permeability are closely associated, exhibiting a certain interplay between them, and the current view of treating the one irrespectively of the other may not be sufficient. In this paper, we describe the research that has been done thus far, and present new data, to shed light on this solubility-permeability interplay. It has been shown that decreased apparent permeability accompanies the solubility increase when using different solubilization methods. Overall, the weight of the evidence indicates that the solubility-permeability interplay cannot be ignored when using solubility-enabling formulations; looking solely at the solubility enhancement that the formulation enables may be misleading with regards to predicting the resulting absorption, and hence, the solubility-permeability interplay must be taken into account to strike the optimal solubility-permeability balance, in order to maximize the overall absorption.

Intestinal infection with Giardia spp. reduces epithelial barrier function in a myosin light chain kinase-dependent fashion.

PubMed

Scott, Kevin G-E; Meddings, Jonathon B; Kirk, David R; Lees-Miller, Susan P; Buret, André G

2002-10-01

Giardiasis causes malabsorptive diarrhea, and symptoms can be present in the absence of any significant morphologic injury to the intestinal mucosa. The effects of giardiasis on epithelial permeability in vivo remain unknown, and the role of T cells and myosin light chain kinase (MLCK) in altered intestinal barrier function is unclear. This study was conducted to determine whether Giardia spp. alters intestinal permeability in vivo, to assess whether these abnormalities are dependent on T cells, and to assess the role of MLCK in altered epithelial barrier function. Immunocompetent and isogenic athymic mice were inoculated with axenic Giardia muris trophozoites or sterile vehicle (control), then assessed for trophozoite colonization and gastrointestinal permeability. Mechanistic studies using nontransformed human duodenal epithelial monolayers (SCBN) determined the effects of Giardia on myosin light chain (MLC) phosphorylation, transepithelial fluorescein isothiocyanate-dextran fluxes, cytoskeletal F-actin, tight junctional zonula occludens-1 (ZO-1), and MLCK. Giardia infection caused a significant increase in small intestinal, but not gastric or colonic, permeability that correlated with trophozoite colonization in both immunocompetent and athymic mice. In vitro, Giardia increased permeability and phosphorylation of MLC and reorganized F-actin and ZO-1. These alterations were abolished with an MLCK inhibitor. Disruption of small intestinal barrier function is T cell independent, disappears on parasite clearance, and correlates with reorganization of cytoskeletal F-actin and tight junctional ZO-1 in an MLCK-dependent fashion.

Intestinal permeability defects: Is it time to treat?

PubMed Central

Odenwald, Matthew A.; Turner, Jerrold R.

2013-01-01

An essential role of the intestinal epithelium is to separate luminal contents from the interstitium, a function primarily determined by the integrity of the epithelium and the tight junction that seals the paracellular space. Intestinal tight junctions are selectively-permeable, and intestinal permeability can be increased physiologically in response to luminal nutrients or pathologically by mucosal immune cells and cytokines, the enteric nervous system, and pathogens. Compromised intestinal barrier function is associated with an array of clinical conditions, both intestinal and systemic. While most available data are correlative, some studies support a model where cycles of increased intestinal permeability, intestinal immune activation, and subsequent immune-mediated barrier loss contribute to disease progression. This model is applicable to intestinal and systemic diseases. However, it has not been proven and both mechanistic and therapeutic studies are ongoing. Nevertheless, the correlation between increased intestinal permeability and disease has caught the attention of the public, leading to a rise in popularity of the diagnosis of “leaky gut syndrome,” which encompasses a range of systemic disorders. Proponents claim that barrier restoration will cure underlying disease, but this has not been demonstrated in clinical trials. Moreover, human and mouse studies show that intestinal barrier loss alone is insufficient to initiate disease. It is therefore uncertain if increased permeability in these patients is a cause or effect of the underlying disorder. Although drug targets that may mediate barrier restoration have been proposed, none have been proven effective. As such, current treatments for barrier dysfunction should target the underlying disease. PMID:23851019

Low-frequency ESR studies on permeable and impermeable deuterated nitroxyl radicals in corn oil solution.

PubMed

David Jebaraj, D; Utsumi, Hideo; Milton Franklin Benial, A

2018-04-01

Low-frequency electron spin resonance studies were performed for 2 mM concentration of deuterated permeable and impermeable nitroxyl spin probes, 3-methoxycarbonyl-2,2,5,5-tetramethyl-pyrrolidine-1-oxyl and 3-carboxy-2,2,5,5,-tetramethyl-1-pyrrolidinyloxy in pure water and various concentrations of corn oil solution. The electron spin resonance parameters such as the line width, hyperfine coupling constant, g factor, rotational correlation time, permeability, and partition parameter were estimated. The broadening of line width was observed for nitroxyl radicals in corn oil mixture. The rotational correlation time increases with increasing concentration of corn oil, which indicates the less mobile nature of spin probe in corn oil mixture. The membrane permeability and partition parameter values were estimated as a function of corn oil concentration, which reveals that the nitroxyl radicals permeate equally into the aqueous phase and oil phase at the corn oil concentration of 50%. The electron spin resonance spectra demonstrate the permeable and impermeable nature of nitroxyl spin probes. From these results, the corn oil concentration was optimized as 50% for phantom studies. In this work, the corn oil and pure water mixture phantom models with various viscosities correspond to plasma membrane, and whole blood membrane with different hematocrit levels was studied for monitoring the biological characteristics and their interactions with permeable nitroxyl spin probe. These results will be useful for the development of electron spin resonance and Overhauser-enhanced magnetic resonance imaging modalities in biomedical applications. Copyright © 2017 John Wiley & Sons, Ltd.

Evaluation of permeable fractures in rock aquifers

NASA Astrophysics Data System (ADS)

Bok Lee, Hang

2015-04-01

In this study, the practical usefulness and fundamental applicability of a self-potential (SP) method for identifying the permeable fractures were evaluated by a comparison of SP methods with other geophysical logging methods and hydraulic tests. At a 10 m-shallow borehole in the study site, the candidates of permeable fractures crossing the borehole were first determined by conventional geophysical methods such as an acoustic borehole televiwer, temperature, electrical conductivity and gamma-gamma loggings, which was compared to the analysis by the SP method. Constant pressure injection and recovery tests were conducted for verification of the hydraulic properties of the fractures identified by various logging methods. The acoustic borehole televiwer and gamma-gamma loggings detected the open space or weathering zone within the borehole, but they cannot prove the possibility of a groundwater flow through the detected fractures. The temperature and electrical conductivity loggings had limitations to detect the fractured zones where groundwater in the borehole flows out to the surrounding rock aquifers. Comparison of results from different methods showed that there is a best correlation between the distribution of hydraulic conductivity and the variation of the SP signals, and the SP logging can estimate accurately the hydraulic activity as well as the location of permeable fractures. Based on the results, the SP method is recommended for determining the hydraulically-active fractures rather than other conventional geophysical loggings. This self-potential method can be effectively applied in the initial stage of a site investigation which selects the optimal location and evaluates the hydrogeological property of fractures in target sites for the underground structure including the geothermal reservoir and radioactive waste disposal.

Enhancement and inhibition effects on the corneal permeability of timolol maleate: Polymers, cyclodextrins and chelating agents.

PubMed

Rodríguez, Isabel; Vázquez, José Antonio; Pastrana, Lorenzo; Khutoryanskiy, Vitaliy V

2017-08-30

This study investigates how both bioadhesive polymers (chitosan, hyaluronic acid and alginate) and permeability enhancers (ethylene glycol- bis(2-aminoethylether)- N, N, N', N'- tetraacetic acid (EGTA) and hydroxypropyl-ß-cyclodextrin) influence the permeability of the anti-glaucoma drug timolol maleate through ex vivo bovine corneas. Our results showed that only the permeability enhancers alone were able to increase drug permeability, whereas the polymers significantly reduced drug permeation, and however, they increased the pre-corneal residence of timolol. Ternary systems (polymer-enhancer-drug) showed a reduced drug permeability compared to the polymers alone. Fluorescence microscopy analysis of the epithelium surface confirmed there was no evidence of epithelial disruption caused by these formulations, suggesting that polymer-enhancer interactions reduce drug solubilization and counteract the disruptive effect of the permeability enhancers on the surface of the cornea. Further mucoadhesive tests, revealed a stable interaction of chitosan and hyaluronic acid with the epithelium, while alginate showed poor mucoadhesive properties. The differences in mucoadhesion correlated with the permeability of timolol maleate observed, i.e. formulations containing mucoadhesive polymers showed lower drug permeabilities. The results of the present study indicate polymers acting as an additional barrier towards drug permeability which is even more evident in the presence of permeability enhancers like EGTA and hydroxypropyl-ß-cyclodextrin. Then, this study highlights the need to adequately select additives intended for ocular applications since interactions between them can have opposite results to what expected in terms of drug permeability. Copyright © 2017 Elsevier B.V. All rights reserved.

Greater scaffold permeability promotes growth of osteoblastic cells in a perfused bioreactor.

PubMed

Fan, Jie; Jia, Xiaoling; Huang, Yan; Fu, Bingmei M; Fan, Yubo

2015-12-01

Pore size and porosity have been widely acknowledged as important structural factors in tissue-engineered scaffolds. In fact, scaffolds with similar pore size and porosity can provide important and varied permeability due to different pore shape, interconnectivity and tortuosity. However, the effects of scaffold permeability on seeded cells remains largely unknown during tissue regeneration in vitro. In this study, we measured the Darcy permeability (K) of tri-calcium phosphate scaffolds by distributed them into three groups: Low, Medium and High. As a result, the effects of scaffold permeability on cell proliferation, cellular activity and growth in the inner pores were investigated in perfused and static cultures in vitro. Results demonstrated that higher permeable scaffolds exhibited superior performance during bone regeneration in vitro and the advantages of higher scaffold permeability were amplified in perfused culture. Based on these findings, scaffold permeability should be considered in future scaffold fabrications. Copyright © 2013 John Wiley & Sons, Ltd.

Permeability studies on 3D Ni foam/graphene composites

NASA Astrophysics Data System (ADS)

Yang, Zhuxian; Chen, Hongmei; Wang, Nannan; Xia, Yongde; Zhu, Yanqiu

2017-09-01

This study investigates the permeability of new 3D Ni foam/graphene composites (Ni foam covered with graphene) using compressed air, Ar and N2 as the probe gases. The results show that the introduction of graphene on the surface of Ni foam via in situ chemical vapour deposition is not detrimental to the permeability of the composites; on the contrary, in some cases it improves permeability. A modified Ergun-type correlation has been proposed, which represents very well the permeability of the Ni foam/graphene composites, especially at flow rates higher than 0.3 m s-1. Further studies show that graphene also helps to improve the thermal conductivity of the composite. These results suggest that the graphene involvement will make the Ni foam/graphene composite a good candidate for potential applications such as filters or heat exchangers suitable for working under harsh conditions such as at high temperatures, in corrosive environments, etc.

Lab and Pore-Scale Study of Low Permeable Soils Diffusional Tortuosity

NASA Astrophysics Data System (ADS)

Lekhov, V.; Pozdniakov, S. P.; Denisova, L.

2016-12-01

Diffusion plays important role in contaminant spreading in low permeable units. The effective diffusion coefficient of saturated porous medium depends on this coefficient in water, porosity and structural parameter of porous space - tortuosity. Theoretical models of relationship between porosity and diffusional tortuosity are usually derived for conceptual granular models of medium filled by solid particles of simple geometry. These models usually do not represent soils with complex microstructure. The empirical models, like as Archie's law, based on the experimental electrical conductivity data are mostly useful for practical applications. Such models contain empirical parameters that should be defined experimentally for given soil type. In this work, we compared tortuosity values obtained in lab-scale diffusional experiments and pore scale diffusion simulation for the studied soil microstructure and exanimated relationship between tortuosity and porosity. Samples for the study were taken from borehole cores of low-permeable silt-clay formation. Using the samples of 50 cm3 we performed lab scale diffusional experiments and estimated the lab-scale tortuosity. Next using these samples we studied the microstructure with X-ray microtomograph. Shooting performed on undisturbed microsamples of size 1,53 mm with a resolution ×300 (10243 vox). After binarization of each obtained 3-D structure, its spatial correlation analysis was performed. This analysis showed that the spatial correlation scale of the indicator variogram is considerably smaller than microsample length. Then there was the numerical simulation of the Laplace equation with binary coefficients for each microsamples. The total number of simulations at the finite-difference grid of 1753 cells was 3500. As a result the effective diffusion coefficient, tortuosity and porosity values were obtained for all studied microsamples. The results were analyzed in the form of graph of tortuosity versus porosity. The 6 experimental tortuosity values well agree with pore-scale simulations falling in the general pattern that shows nonlinear decreasing of tortuosity with decreasing of porosity. Fitting this graph by Archie model we found exponent value in the range between 1,8 and 2,4. This work was supported by RFBR via grant 14-05-00409.

The interaction of hydrogen with metal alloys

NASA Technical Reports Server (NTRS)

Danford, M. D.; Montano, J. W.

1991-01-01

Hydrogen diffusion coefficients were measured for several alloys, and these were determined to be about the same at 25 C for all alloys investigated. The relation of structure, both metallurgical and crystallographic, to the observed hydrogen distribution on charging was investigated, as well as the role of hydride formation in the hydrogen resistance of metal alloys. An attempt was made to correlate the structures and compositions of metal alloys as well as other parameters with the ratios of their notched tensile strengths in hydrogen to that in helium, R(H2/He), which are believed to represent a measure of their hydrogen resistance. Evidence supports the belief that hydrogen permeability and hydrogen resistance are increased by smaller grain sizes for a given alloy composition.

Along-axis hydrothermal flow at the axis of slow spreading Mid-Ocean Ridges: Insights from numerical models of the Lucky Strike vent field (MAR)

NASA Astrophysics Data System (ADS)

Fontaine, Fabrice J.; Cannat, Mathilde; Escartin, Javier; Crawford, Wayne C.

2014-07-01

processes and efficiency of hydrothermal heat extraction along the axis of mid-ocean ridges are controlled by lithospheric thermal and permeability structures. Hydrothermal circulation models based on the structure of fast and intermediate spreading ridges predict that hydrothermal cell organization and vent site distribution are primarily controlled by the thermodynamics of high-temperature mid-ocean ridge hydrothermal fluids. Using recent constraints on shallow structure at the slow spreading Lucky Strike segment along the Mid-Atlantic Ridge, we present a physical model of hydrothermal cooling that incorporates the specificities of a magma-rich slow spreading environment. Using three-dimensional numerical models, we show that, in contrast to the aforementioned models, the subsurface flow at Lucky Strike is primarily controlled by across-axis permeability variations. Models with across-axis permeability gradients produce along-axis oriented hydrothermal cells and an alternating pattern of heat extraction highs and lows that match the distribution of microseismic clusters recorded at the Lucky Strike axial volcano. The flow is also influenced by temperature gradients at the base of the permeable hydrothermal domain. Although our models are based on the structure and seismicity of the Lucky Strike segment, across-axis permeability gradients are also likely to occur at faster spreading ridges and these results may also have important implications for the cooling of young crust at fast and intermediate spreading centers.

Characterization of Carbonate Hydrostratigraphy Using Ambient Seismic Noise: A Pilot Study in the Floridan Aquifer System, Ocala, FL, USA

NASA Astrophysics Data System (ADS)

James, S.; Screaton, E.; Russo, R. M.; Panning, M. P.; Bremner, P. M.; Stanciu, A. C.; Torpey, M. E.; Hongsresawat, S.; Farrell, M. E.

2014-12-01

Defining zones of high and low hydraulic conductivity within aquifers is vital to hydrogeologic research and groundwater management. Carbonate aquifers are particularly difficult to characterize due to dissolution and dolomitization. We investigated a new imaging technique for aquifer characterization that uses cross-correlation of ambient seismic noise to determine seismic velocity structure. Differences in densities between confining units and high permeability flow zones can produce distinct seismic velocities in the correlated signals. We deployed an array of 9 short period geophones from 11/2013 to 3/2014 in Indian Lake State Forest, Florida, to determine if the high frequency diffusive seismic wavefield can be used for imaging hydrostratigraphy. Here, a thin surficial layer of siliciclastic deposits overlie a ~ 0.6 km sequence of Cenozoic limestone and dolomite units that comprise the Floridan Aquifer System (FAS). A low permeability dolomite unit vertically divides the FAS throughout most of Florida. Deep boreholes surrounding the site constrain hydrostratigraphy, however the horizontal continuity of the middle dolomite unit as well as its effectiveness as a confining unit in the study area are not well known. The stations were spaced at distances ranging from 0.18 to 2.6 km, and yielded 72 cross-correlation Green's functions for Rayleigh wave propagation at frequencies between 0.2 and 40 Hz, with dominant peaks around 0.8 Hz, 3 Hz and 13 Hz. Local vehicle traffic did interfere to a degree with the correlation of the diffuse waves, but was minimized by using only nighttime data. At the lowest frequencies (greatest depths) investigated, velocities increase with depth; however, correlations become less coherent at higher frequencies, perhaps due to shallow complex scattering. Comparison of cross-correlations for all station pairs also indicates spatial variations in velocity. Thus, the method shows promise for characterization of the heterogeneity of the Floridan Aquifer System.

Stereochemistry Balances Cell Permeability and Solubility in the Naturally Derived Phepropeptin Cyclic Peptides.

PubMed

Schwochert, Joshua; Lao, Yongtong; Pye, Cameron R; Naylor, Matthew R; Desai, Prashant V; Gonzalez Valcarcel, Isabel C; Barrett, Jaclyn A; Sawada, Geri; Blanco, Maria-Jesus; Lokey, R Scott

2016-08-11

Cyclic peptide (CP) natural products provide useful model systems for mapping "beyond-Rule-of-5" (bRo5) space. We identified the phepropeptins as natural product CPs with potential cell permeability. Synthesis of the phepropeptins and epimeric analogues revealed much more rapid cellular permeability for the natural stereochemical pattern. Despite being more cell permeable, the natural compounds exhibited similar aqueous solubility as the corresponding epimers, a phenomenon explained by solvent-dependent conformational flexibility among the natural compounds. When analyzing the polarity of the solution structures we found that neither the number of hydrogen bonds nor the total polar surface area accurately represents the solvation energies of the high and low dielectric conformations. This work adds to a growing number of natural CPs whose solvent-dependent conformational behavior allows for a balance between aqueous solubility and cell permeability, highlighting structural flexibility as an important consideration in the design of molecules in bRo5 chemical space.

Variations of petrophysical properties and spectral induced polarization in response to drainage and imbibition: a study on a correlated random tube network

NASA Astrophysics Data System (ADS)

Maineult, Alexis; Jougnot, Damien; Revil, André

2018-02-01

We implement a procedure to simulate the drainage and imbibition in random, 2-D, square networks. We compute the resistivity index, the relative permeability and the characteristic lengths of a correlated network at various saturation states, under the assumption that the surface conductivity can be neglected. These parameters exhibit a hysteretic behaviour. Then, we calculate the spectral induced polarization (SIP) response of the medium, under the assumption that the electrical impedance of each tube follows a local Warburg conductivity model, with identical DC conductivity and chargeability for all the tubes. We evidence that the shape of the SIP spectra depends on the saturation state. The analysis of the evolution of the macroscopic Cole-Cole parameters of the spectra in function of the saturation also behaves hysteretically, except for the Cole-Cole exponent. We also observe a power-law relationship between the macroscopic DC conductivity and time constant and the relative permeability. We also show that the frequency peak of the phase spectra is directly related to the characteristic length and to the relative permeability, underlining the potential interest of SIP measurements for the estimation of the permeability of unsaturated media.

Permeability studies of redox-sensitive nitroxyl spin probes in corn oil using an L-band ESR spectrometer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jebaraj, D. David; Utsumi, Hideo; Asath, R. Mohamed

Electron spin resonance (ESR) studies were carried out for 2mM {sup 14}N labeled {sup 2}H enriched 3-methoxycarbonyl-2,2,5,5-tetramethyl-pyrrolidine-1-oxyl (MC-PROXYL) and 3–carboxy-2,2,5,5,-tetramethyl-1-pyrrolidinyloxy (carboxy-PROXYL) in pure water and various concentrations of corn oil. The ESR parameters, such as the line width, hyperfine coupling constant, g-factor, rotational correlation time, partition parameter and permeability were reported for the samples. The line width broadening was observed for both nitroxyl radicals in corn oil solutions. The partition parameter for permeable MC-PROXYL in corn oil increases with increasing concentration of corn oil, which reveals that the nitroxyl spin probe permeates into the oil phase. From the results, themore » corn oil concentration was optimized as 50 % for phantom studies. The rotational correlation time also increases with increasing concentration of corn oil. The permeable and impermeable nature of nitroxyl spin probes was demonstrated. These results will be useful for the development of ESR/OMR imaging modalities in in vivo and in vitro studies.« less

Properties of the moon and its environment from lunar magnetometer measurements

NASA Technical Reports Server (NTRS)

Parkin, C. W.

1976-01-01

Lunar analysis of data from a total of nine lunar magnetometers is described. Results obtained concerning electromagnetic, compositional, and structural properties of the lunar interior are discussed. Specific topics covered include: lunar magnetic permeability and iron abundance; limits on a highly conducting lunar core; lunar electrical conductivity; and internal structure inferred from conductivity and permeability results.

Segmental-dependent permeability throughout the small intestine following oral drug administration: Single-pass vs. Doluisio approach to in-situ rat perfusion.

PubMed

Lozoya-Agullo, Isabel; Zur, Moran; Beig, Avital; Fine, Noa; Cohen, Yael; González-Álvarez, Marta; Merino-Sanjuán, Matilde; González-Álvarez, Isabel; Bermejo, Marival; Dahan, Arik

2016-12-30

Intestinal drug permeability is position dependent and pertains to a specific point along the intestinal membrane, and the resulted segmental-dependent permeability phenomenon has been recognized as a critical factor in the overall absorption of drug following oral administration. The aim of this research was to compare segmental-dependent permeability data obtained from two different rat intestinal perfusion approaches: the single-pass intestinal perfusion (SPIP) model and the closed-loop (Doluisio) rat perfusion method. The rat intestinal permeability of 12 model drugs with different permeability characteristics (low, moderate, and high, as well as passively and actively absorbed) was assessed in three small intestinal regions: the upper jejunum, mid-small intestine, and the terminal ileum, using both the SPIP and the Doluisio experimental methods. Excellent correlation was evident between the two approaches, especially in the upper jejunum (R 2 =0.95). Significant regional-dependent permeability was found in half of drugs studied, illustrating the importance and relevance of segmental-dependent intestinal permeability. Despite the differences between the two methods, highly comparable results were obtained by both methods, especially in the medium-high P eff range. In conclusion, the SPIP and the Doluisio method are both equally useful in obtaining crucial segmental-dependent intestinal permeability data. Copyright © 2016 Elsevier B.V. All rights reserved.

Cocrystals of Hydrochlorothiazide: Solubility and Diffusion/Permeability Enhancements through Drug-Coformer Interactions.

PubMed

Sanphui, Palash; Devi, V Kusum; Clara, Deepa; Malviya, Nidhi; Ganguly, Somnath; Desiraju, Gautam R

2015-05-04

Hydrochlorothiazide (HCT) is a diuretic and a BCS class IV drug with low solubility and low permeability, exhibiting poor oral absorption. The present study attempts to improve the physicochemical properties of the drug using a crystal engineering approach with cocrystals. Such multicomponent crystals of HCT with nicotinic acid (NIC), nicotinamide (NCT), 4-aminobenzoic acid (PABA), succinamide (SAM), and resorcinol (RES) were prepared using liquid-assisted grinding, and their solubilities in pH 7.4 buffer were evaluated. Diffusion and membrane permeability were studied using a Franz diffusion cell. Except for the SAM and NIC cocrystals, all other binary systems exhibited improved solubility. All of the cocrystals showed improved diffusion/membrane permeability compared to that of HCT with the exception of the SAM cocrystal. When the solubility was high, as in the case of PABA, NCT, and RES cocrystals, the flux/permeability dropped slightly. This is in agreement with the expected interplay between solubility and permeability. Improved solubility/permeability is attributed to new drug-coformer interactions. Cocrystals of SAM, however, showed poor solubility and flux. This cocrystal contains a primary sulfonamide dimer synthon similar to that of HCT polymorphs, which may be a reason for its unusual behavior. Hirshfeld surface analysis was carried out in all cases to determine whether a correlation exists between cocrystal permeability and drug-coformer interactions.

Distinguishing between the Permeability Relationships with Absorption and Metabolism To Improve BCS and BDDCS Predictions in Early Drug Discovery

PubMed Central

2015-01-01

The biopharmaceutics classification system (BCS) and biopharmaceutics drug distribution classification system (BDDCS) are complementary classification systems that can improve, simplify, and accelerate drug discovery, development, and regulatory processes. Drug permeability has been widely accepted as a screening tool for determining intestinal absorption via the BCS during the drug development and regulatory approval processes. Currently, predicting clinically significant drug interactions during drug development is a known challenge for industry and regulatory agencies. The BDDCS, a modification of BCS that utilizes drug metabolism instead of intestinal permeability, predicts drug disposition and potential drug–drug interactions in the intestine, the liver, and most recently the brain. Although correlations between BCS and BDDCS have been observed with drug permeability rates, discrepancies have been noted in drug classifications between the two systems utilizing different permeability models, which are accepted as surrogate models for demonstrating human intestinal permeability by the FDA. Here, we recommend the most applicable permeability models for improving the prediction of BCS and BDDCS classifications. We demonstrate that the passive transcellular permeability rate, characterized by means of permeability models that are deficient in transporter expression and paracellular junctions (e.g., PAMPA and Caco-2), will most accurately predict BDDCS metabolism. These systems will inaccurately predict BCS classifications for drugs that particularly are substrates of highly expressed intestinal transporters. Moreover, in this latter case, a system more representative of complete human intestinal permeability is needed to accurately predict BCS absorption. PMID:24628254

Distinguishing between the permeability relationships with absorption and metabolism to improve BCS and BDDCS predictions in early drug discovery.

PubMed

Larregieu, Caroline A; Benet, Leslie Z

2014-04-07

The biopharmaceutics classification system (BCS) and biopharmaceutics drug distribution classification system (BDDCS) are complementary classification systems that can improve, simplify, and accelerate drug discovery, development, and regulatory processes. Drug permeability has been widely accepted as a screening tool for determining intestinal absorption via the BCS during the drug development and regulatory approval processes. Currently, predicting clinically significant drug interactions during drug development is a known challenge for industry and regulatory agencies. The BDDCS, a modification of BCS that utilizes drug metabolism instead of intestinal permeability, predicts drug disposition and potential drug-drug interactions in the intestine, the liver, and most recently the brain. Although correlations between BCS and BDDCS have been observed with drug permeability rates, discrepancies have been noted in drug classifications between the two systems utilizing different permeability models, which are accepted as surrogate models for demonstrating human intestinal permeability by the FDA. Here, we recommend the most applicable permeability models for improving the prediction of BCS and BDDCS classifications. We demonstrate that the passive transcellular permeability rate, characterized by means of permeability models that are deficient in transporter expression and paracellular junctions (e.g., PAMPA and Caco-2), will most accurately predict BDDCS metabolism. These systems will inaccurately predict BCS classifications for drugs that particularly are substrates of highly expressed intestinal transporters. Moreover, in this latter case, a system more representative of complete human intestinal permeability is needed to accurately predict BCS absorption.

Grain-Size Dynamics Beneath Mid-Ocean Ridges: Implications for Permeability and Melt Extraction

NASA Astrophysics Data System (ADS)

Turner, A. J.; Katz, R. F.; Behn, M. D.

2014-12-01

The permeability structure of the sub-ridge mantle plays an important role in how melt is focused and extracted at mid-ocean ridges. Permeability is controlled by porosity and the grain size of the solid mantle matrix, which is in turn controlled by the deformation conditions. To date, models of grain size evolution and mantle deformation have not been coupled to determine the influence of spatial variations in grain-size on the permeability structure at mid-ocean ridges. Rather, current models typically assume a constant grain size for the whole domain [1]. Here, we use 2-D numerical models to evaluate the influence of grain-size variability on the permeability structure beneath a mid-ocean ridge and use these results to speculate on the consequences for melt focusing and extraction. We construct a two-dimensional, single phase model for the steady-state grain size beneath a mid-ocean ridge. The model employs a composite rheology of diffusion creep, dislocation creep, dislocation accommodated grain boundary sliding, and a brittle stress limiter. Grain size is calculated using the "wattmeter" model of Austin and Evans [2]. We investigate the sensitivity of the model to global variations in grain growth exponent, potential temperature, spreading-rate, and grain boundary sliding parameters [3,4]. Our model predicts that permeability varies by two orders of magnitude due to the spatial variability of grain size within the expected melt region of a mid-ocean ridge. The predicted permeability structure suggests grain size may promote focusing of melt towards the ridge axis. Furthermore, the calculated grain size structure should focus melt from a greater depth than models that exclude grain-size variability. Future work will involve evaluating this hypothesis by implementing grain-size dynamics within a two-phase mid-ocean ridge model. The developments of such a model will be discussed. References: [1] R. F. Katz, Journal of Petrology, volume 49, issue 12, page 2099, 2008. [2] N. J. Austin and B. Evans, Geology, 35:354, 2007. [3] G. Hirth and D. Kohlstedt, In Inside the Subduction Factory, volume 138 of AGU Geophysical Monograph, 2003. [4] L. N. Hansen et al., JGR (Solid Earth), 116:B08201, 2011.

Assessment of porous material anisotropy and its effect on gas permeability

NASA Astrophysics Data System (ADS)

Wałowski, Grzegorz

2017-10-01

The results of experimental research upon the assessment of porous material anisotropy and its effect on gas permeability of porous materials with respect to the gas flow. The conducted research applied to natural materials with an anisotropic gap-porous structure and - for comparative purposes - to model materials such as coke, pumice and polyamide agglomerates. The research was conducted with the use of a special test stand that enables measuring the gas permeability with respect to three flow orientations compared with symmetric cubic-shaped samples. The research results show an explicit impact of the flow direction on the permeability of materials porous, which results from their anisotropic internal structures. The anisotropy coefficient and permeability effective coefficient of such materials was determined and an experimental evaluation of the value of this coefficient was conducted with respect to the gas stream and the total pressure drop across the porous deposit. The process of gas permeability was considered in the category of hydrodynamics of gas flow through porous deposits. It is important to broaden the knowledge of gas hydrodynamics assessment in porous media so far unrecognised for the development of a new generation of clean energy sources, especially in the context of biogas or raw gas production.

Dynamic permeability of the lacunar–canalicular system in human cortical bone

PubMed Central

Benalla, M.; Palacio-Mancheno, P. E.; Fritton, S. P.; Cardoso, L.

2013-01-01

A new method for the experimental determination of the permeability of a small sample of a fluid-saturated hierarchically structured porous material is described and applied to the determination of the lacunar–canalicular permeability (KLC) in bone. The interest in the permeability of the lacunar–canalicular pore system (LCS) is due to the fact that the LCS is considered to be the site of bone mechanotransduction due to the loading-driven fluid flow over cellular structures. The permeability of this space has been estimated to be anywhere from 10−17 to 10−25 m2. However, the vascular pore system and LCS are intertwined, rendering the permeability of the much smaller-dimensioned LCS challenging to measure. In this study, we report a combined experimental and analytical approach that allowed the accurate determination of the KLC to be on the order of 10−22 m2 for human osteonal bone. It was found that the KLC has a linear dependence on loading frequency, decreasing at a rate of 2 × 10−24 m2/Hz from 1 to 100 Hz, and using the proposed model, the porosity alone was able to explain 86 % of the KLC variability. PMID:24146291

Permeability of cork to gases.

PubMed

Faria, David P; Fonseca, Ana L; Pereira, Helen; Teodoro, Orlando M N D

2011-04-27

The permeability of gases through uncompressed cork was investigated. More than 100 samples were assessed from different plank qualities to provide a picture of the permeability distribution. A novel technique based on a mass spectrometer leak detector was used to directly measure the helium flow through the central area of small disks 10 mm in diameter and 2 mm thick. The permeability for nitrogen, oxygen, and other gases was measured by the pressure rise technique. Boiled and nonboiled cork samples from different sections were evaluated. An asymmetric frequency distribution ranging 3 orders of magnitude (roughly from 1 to 1000 μmol/(cm·atm·day)) for selected samples without macroscopic defects was found, having a peak below 100 μmol/(cm·atm·day). Correlation was found between density and permeability: higher density samples tend to show lower permeability. However, boiled cork showed a mean lower permeability despite having a lower density. The transport mechanism of gases through cork was also examined. Calculations suggest that gases permeate uncompressed cork mainly through small channels between cells under a molecular flow regime. The diameter of such channels was estimated to be in the range of 100 nm, in agreement with the plasmodesmata size in the cork cell walls.

Structure-function study on a de novo synthetic hydrophobic ion channel.

PubMed Central

Qi, Z; Sokabe, M; Donowaki, K; Ishida, H

1999-01-01

Ion conduction properties of a de novo synthesized channel, formed from cyclic octa-peptides consisting of four alternate L-alanine (Ala) and N'-acylated 3-aminobenzoic acid (Aba) moieties, were studied in bilayer membranes. The single-channel conductance was 9 pS in symmetrical 500 mM KCl. The channel favored permeation of cations over anions with a permeability ratio (PCl-/PK+) of 0.15. The selectivity sequence among monovalent cations based on permeability ratio (PX+/PK+) fell into an order: NH4+(1.4) > Cs+(1. 1) >/= K+(1.0) > Na+(0.4) >> Li+(0). The conductance-activity relationship of the channel in K+ solutions followed simple Michaelis-Menten kinetics with a half-maximal saturating activity of 8 mM and a maximal conductance of 9 pS. The permeability ratio PNa+/PK+ remained constant ( approximately 0.40) under biionic concentrations from 10 to 500 mM. These results suggests that the channel is a one-ion channel. The pore diameter probed by a set of organic cations was approximately 6 A. The single-channel current was blocked by Ca2+ in a dose-dependent manner that followed a single-site titration curve with a voltage-dependent dissociation constant of 0.6 mM at 100 mV. The electric distance of the binding site for Ca2+ was 0.07 from both entrances of the channel, indicating the presence of two symmetrical binding sites in each vicinity of the channel entrance. Correlations between conduction properties and structural aspects of the channel are discussed in terms of a three-barrier and two-binding-site (3B2S) model of Eyring rate theory. All available structural information supported an idea that the channel was formed from a tail-to-tail associated dimer of the molecule, the pore of which was lined with hydrophobic acyl chains. This is the first report to have made a systematic analysis of ion permeation through a hydrophobic pore. PMID:9929469

Doxycycline Attenuates Lipopolysaccharide-Induced Microvascular Endothelial Cell Derangements.

PubMed

Wiggins-Dohlvik, Katie; Stagg, Hayden W; Han, Min Suk; Alluri, Himakarnika; Oakley, Ryan P; Anasooya Shaji, Chinchusha; Davis, Matthew L; Tharakan, Binu

2016-06-01

Lipopolysaccharide (LPS) is known to induce vascular derangements. The pathophysiology involved therein is unknown, but matrix metalloproteinases (MMPs) may be an important mediator. We hypothesized that in vitro LPS provokes vascular permeability, damages endothelial structural proteins, and increases MMP activity; that in vivo LPS increases permeability and fluid requirements; and that the MMP inhibitor doxycycline mitigates such changes. Rat lung microvascular endothelial cells were divided into four groups: control, LPS, LPS plus doxycycline, and doxycycline. Permeability, structural proteins β-catenin and Filamentous-actin, and MMP-9 activity were examined. Sprauge Dawley rats were divided into sham, IV LPS, and IV LPS plus IV doxycycline groups. Mesenteric postcapillary venules were observed. Blood pressure was measured as animals were resuscitated and fluid requirements were compared. Statistical analysis was conducted using Student's t-test and ANOVA. In vitro LPS increased permeability, damaged adherens junctions, induced actin stress fiber formation, and increased MMP-9 enzyme activity. In vivo, IV LPS administration induced vascular permeability. During resuscitation, significantly more fluid was necessary to maintain normotension in the IV LPS group. Doxycycline mitigated all derangements observed. We conclude that LPS increases permeability, damages structural proteins, and increases MMP-9 activity in endothelial cells. Additionally, endotoxemia induces hyperpermeability and increases the amount of IV fluid required to maintain normotension in vivo. Doxycycline mitigates such changes both in vitro and in vivo. Our findings illuminate the possible role of matrix metalloproteinases in the pathophysiology of lipopolysaccharide-induced microvascular hyperpermeability and pave the way for better understanding and treatment of this process.

Permeability estimations and frictional flow features passing through porous media comprised of structured microbeads

NASA Astrophysics Data System (ADS)

Shin, C.

2017-12-01

Permeability estimation has been extensively researched in diverse fields; however, methods that suitably consider varying geometries and changes within the flow region, for example, hydraulic fracture closing for several years, are yet to be developed. Therefore, in the present study a new permeability estimation method is presented based on the generalized Darcy's friction flow relation, in particular, by examining frictional flow parameters and characteristics of their variations. For this examination, computational fluid dynamics (CFD) simulations of simple hydraulic fractures filled with five layers of structured microbeads and accompanied by geometry changes and flow transitions are performed. Consequently, it was checked whether the main structures and shapes of each flow path are preserved, even for geometry variations within porous media. However, the scarcity and discontinuity of streamlines increase dramatically in the transient- and turbulent-flow regions. The quantitative and analytic examinations of the frictional flow features were also performed. Accordingly, the modified frictional flow parameters were successfully presented as similarity parameters of porous flows. In conclusion, the generalized Darcy's friction flow relation and friction equivalent permeability (FEP) equation were both modified using the similarity parameters. For verification, the FEP values of the other aperture models were estimated and then it was checked whether they agreed well with the original permeability values. Ultimately, the proposed and verified method is expected to efficiently estimate permeability variations in porous media with changing geometric factors and flow regions, including such instances as hydraulic fracture closings.

Increased small intestinal permeability in ulcerative colitis: rather genetic than environmental and a risk factor for extensive disease?

PubMed

Büning, Carsten; Geissler, Nora; Prager, Matthias; Sturm, Andreas; Baumgart, Daniel C; Büttner, Janine; Bühner, Sabine; Haas, Verena; Lochs, Herbert

2012-10-01

A disturbed epithelial barrier could play a pivotal role in ulcerative colitis (UC). We performed a family-based study analyzing in vivo gastrointestinal permeability in patients with UC, their healthy relatives, spouses, and controls. In total, 89 patients with UC in remission, 35 first-degree relatives (UC-R), 24 nonrelated spouses (UC-NR), and 99 healthy controls (HC) were studied. Permeability was assessed by a sugar-drink test using sucrose (gastroduodenal permeability), lactulose/mannitol (intestinal permeability), and sucralose (colonic permeability). Data were correlated with clinical characteristics including medical treatment. Increased intestinal permeability was detected significantly more often in UC patients in remission (25/89, 28.1%) compared with HC (6/99, 6.1%; P < 0.001). Similar results were obtained in UC-R (7/35, 20.0%; P = 0.01 compared with HC) regardless of sharing the same household with the patients or not. No difference was found between UC-NR (3/24, 12.5%) and HC. Notably, in UC patients increased intestinal permeability was found in 12/28 patients (42.9%) with pancolitis, 7/30 (23.3%) patients with left-sided colitis, and in 2/19 (10.5%) patients with proctitis (P = 0.04). Gastroduodenal and colonic permeability were similar in all groups. Among patients on azathioprine, increased intestinal permeability was only seen in 1/18 (5.6%) patients. In contrast, in 24/70 (34.3%) patients without azathioprine, an increased intestinal permeability was found (P = 0.005). An increased intestinal but not colonic permeability was found in UC patients in clinical remission that could mark a new risk factor for extensive disease location. Similar findings in healthy relatives but not spouses suggest that this barrier defect is genetically determined. Copyright © 2012 Crohn's & Colitis Foundation of America, Inc.

Effects of biofilm on flow over and through a permeable bed

NASA Astrophysics Data System (ADS)

Kazemifar, Farzan; Blois, Gianluca; Aybar, Marcelo; Perez-Calleja, Patricia; Nerenberg, Robert; Sinha, Sumit; Hardy, Richard; Best, James; Sambrook-Smith, Gregory; Christensen, Kenneth

2016-11-01

Biofilms constitute an important form of bacterial life in aquatic environments and are present at the interface of fluids and solids, such as riverbeds. Biofilms are permeable, heterogeneous, and deformable structures that can influence the flow and mass/momentum transport, yet their interaction with flow is not fully understood in part due to technical obstacles impeding quantitative experimental investigations. The porosity of river beds results in the generation of a diverse mosaic of 'suction' and 'ejection' events that are far removed from typical assumptions of turbulent flow structure over an impermeable bed. In this work, the effect of biofilm on bed permeability is studied. Experiments are conducted in a closed water channel equipped with 4-cm-deep permeable bed models consisting of horizontal cylinders normal to the bulk flow direction, forming an idealized two-dimensional permeable bed. Prior to conducting flow experiments, the models are placed within an independent biofilm reactor to initiate and control the biofilm growth. Once a targeted biofilm growth stage is achieved, the models are transferred to the water channel and subjected to transitional and turbulent flows. Long-distance microscopic particle image velocimetry measurements are performed to quantify the effect of biofilm on the turbulence structure of the free flow as well as the freestream-subsurface flow interaction.

Effects of biofilm on flow over and through a permeable bed

NASA Astrophysics Data System (ADS)

Kazemifar, F.; Blois, G.; Aybar, M.; Perez Calleja, P.; Nerenberg, R.; Sinha, S.; Hardy, R. J.; Best, J.; Sambrook Smith, G.; Christensen, K. T.

2016-12-01

Biofilms constitute an important form of bacterial life in aquatic environments and are present at the fluid-solid interfaces, such as riverbeds. Biofilms are permeable, heterogeneous, and deformable structures that can influence the flow and mass/momentum transport, yet their interaction with flow is not fully understood in part due to technical obstacles impeding quantitative experimental investigations. The porosity of river beds results in the generation of a diverse mosaic of `suction' and `ejection' events that are far removed from typical assumptions of turbulent flow structure over an impermeable bed. In this work, the effect of biofilm on bed permeability is studied. Experiments are conducted in a closed water channel equipped with 4-cm-deep permeable bed models consisting of horizontal cylinders normal to the bulk flow direction, forming an idealized two-dimensional permeable bed (Figure 1). Prior to conducting flow experiments, the models are placed within an independent biofilm reactor to initiate and accurately control the biofilm growth. Once a targeted biofilm growth stage is achieved, the models are transferred to the water channel and subjected to transitional and turbulent flows. Long-distance microscopic particle image velocimetry measurements are performed to quantify the effect of biofilm on the turbulence structure of the free flow as well as the freestream-subsurface flow interaction.

Acoustic Cavitation-Based Monitoring of the Reversibility and Permeability of Ultrasound-Induced Blood-Brain Barrier Opening

PubMed Central

Sun, Tao; Samiotaki, Gesthimani; Wang, Shutao; Acosta, Camilo; Chen, Cherry C.; Konofagou, Elisa E.

2015-01-01

Cavitation events seeded by microbubbles have been previously reported to be associated with MR- or fluorescent-contrast enhancement after focused ultrasound (FUS)-induced blood-brain barrier (BBB) opening. However, it is still unknown whether bubble activity can be correlated with the reversibility (the duration of opening and the likelihood of safe reinstatement) and the permeability of opened BBB, which is critical for the clinical translation of using passive cavitation detection to monitor, predict and control the opening. In this study, the dependence of acoustic cavitation on the BBB opening duration, permeability coefficient and histological damage occurrence were thus investigated. Transcranial pulsed FUS at 1.5 MHz in the presence of systemically circulating microbubbles was applied in the mouse hippocampi (n = 60). The stable and inertial cavitation activities were monitored during sonication. Contrast-enhanced MRI was performed immediately after sonication and every 24 h up to 6 days thereafter, to assess BBB opening, brain tissue permeability and potential edema. Histological evaluations were used to assess the occurrence of neurovascular damages. It was found that stable cavitation was well correlated with: 1) the duration of the BBB opening (r2 = 0.77); 2) the permeability of the opened BBB (r2 = 0.82); 3) the likelihood of safe opening (P < 0.05, safe opening compared to cases of damage; P < 0.0001, no opening compared to safe opening). The inertial cavitation dose was correlated with the resulting BBB permeability (r2 = 0.72). Stable cavitation was found to be more reliable than inertial cavitation at assessing the BBB opening within the pressure range used in this study. This study demonstrates that the stable cavitation response during BBB opening holds promise for predicting and controlling the restoration and pharmacokinetics of FUS-opened BBB. The stable cavitation response therefore showed great promise in predicting the BBB opening duration, enabling thus control of opening according to the drug circulation time. In addition, avoiding adverse effects in the brain and assessing the pharmacokinetics of the compounds delivered can also be achieved by monitoring and controlling the stable cavitation emissions. PMID:26562661

Lung microvascular transport properties measured by multiple indicator dilution methods in patients with adult respiratory distress syndrome. A comparison between patients reversing respiratory failure and those failing to reverse

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harris, T.R.; Bernard, G.R.; Brigham, K.L.

1990-02-01

We conducted indicator dilution studies on the lungs of patients in the early phases of adult respiratory distress syndrome (ARDS) to test the hypothesis that capillary permeability was increased in patients with respiratory failure. Indicator dilution studies were performed using 51Cr-erythrocytes, 125I-albumin, 14C-urea, and 3H-water as tracers. The injectate was infused as a bolus into a central venous line. Peripheral arterial blood was collected and counted for radioactivity. Mathematical analysis of the indicator curves yielded cardiac output, measures of the product of capillary permeability and surface area for urea (PS and D1/2S), the intravascular lung volume (Vv), and the extravascularmore » lung water volume (Ve). Permeability was separated from surface area by normalizing PS and D1/2S to Vv. Patients could be divided into 16 in whom blood gas determinations and radiologic criteria for ARDS were reversed and 23 in whom they were not. We examined indicator dilution and other measures of lung function in the two groups to determine whether significant differences in microvascular function existed. PS and PS/Vv were significantly higher in the nonreversal patients. Ve was above normal, but not different between groups. Linear regression analysis showed significant correlations for all of the following in the nonreversal group: Ve and all measures of permeability, pulmonary vascular resistance (PVR), and the inverse of permeability-surface area measures and AaDO2 and PVR. Only measures of Ve and PS correlated in the reversal group. These results support the hypothesis that capillary permeability is increased in patients with early ARDS and continuing respiratory failure.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heath, Jason E.; Bauer, Stephen J.; Broome, Scott Thomas

The Iowa Stored Energy Plant Agency selected a geologic structure at Dallas Center, Iowa, for evaluation of subsurface compressed air energy storage. The site was rejected due to lower-than-expected and heterogeneous permeability of the target reservoir, lower-than-desired porosity, and small reservoir volume. In an initial feasibility study, permeability and porosity distributions of flow units for the nearby Redfield gas storage field were applied as analogue values for numerical modeling of the Dallas Center Structure. These reservoir data, coupled with an optimistic reservoir volume, produced favorable results. However, it was determined that the Dallas Center Structure cannot be simplified to fourmore » zones of high, uniform permeabilities. Updated modeling using field and core data for the site provided unfavorable results for air fill-up. This report presents Sandia National Laboratories petrologic and petrophysical analysis of the Dallas Center Structure that aids in understanding why the site was not suitable for gas storage.« less

Low Permeability Oil and Gas Plays

EIA Publications

The map shows boundaries, structure (elevation of the top contours), and isopachs (thickness contours) for major low permeability oil and gas plays in the lower 48 States. Additionally, related oil and gas infrastructure layers are included

Anion-Cation Permeability Correlates with Hydrated Counterion Size in Glycine Receptor Channels

PubMed Central

Sugiharto, Silas; Lewis, Trevor M.; Moorhouse, Andrew J.; Schofield, Peter R.; Barry, Peter H.

2008-01-01

The functional role of ligand-gated ion channels depends critically on whether they are predominantly permeable to cations or anions. However, these, and other ion channels, are not perfectly selective, allowing some counterions to also permeate. To address the mechanisms by which such counterion permeation occurs, we measured the anion-cation permeabilities of different alkali cations, Li+ Na+, and Cs+, relative to either Cl− or \\documentclass[10pt]{article} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{pmc} \\usepackage[Euler]{upgreek} \\pagestyle{empty} \\oddsidemargin -1.0in \\begin{document} \\begin{equation*}{\\mathrm{NO}}_{3}^{-}\\end{equation*}\\end{document} anions in both a wild-type glycine receptor channel (GlyR) and a mutant GlyR with a wider pore diameter. We hypothesized and showed that counterion permeation in anionic channels correlated inversely with an equivalent or effective hydrated size of the cation relative to the channel pore radius, with larger counterion permeabilities being observed in the wider pore channel. We also showed that the anion component of conductance was independent of the nature of the cation. We suggest that anions and counterion cations can permeate through the pore as neutral ion pairs, to allow the cations to overcome the large energy barriers resulting from the positively charged selectivity filter in small GlyR channels, with the permeability of such ion pairs being dependent on the effective hydrated diameter of the ion pair relative to the pore diameter. PMID:18708455

Determination of petrophysical properties of sedimentary rocks by optical methods

NASA Astrophysics Data System (ADS)

Korte, D.; Kaukler, D.; Fanetti, M.; Cabrera, H.; Daubront, E.; Franko, M.

2017-04-01

Petrophysical properties of rocks (thermal diffusivity and conductivity, porosity and density) as well as the correlation between them are of great importance for many geoscientific applications. The porosity of the reservoir rocks and their permeability are the most fundamental physical properties with respect to the storage and transmission of fluids, mainly oil characterization. Accurate knowledge of these parameters for any hydrocarbon reservoir is required for efficient development, management, and prediction of future performance of the oilfield. Thus, the porosity and permeability, as well as the chemical composition must be quantified as precisely as possible. This should be done along with the thermal properties, density, conductivity, diffusivity and effusivity that are intimately related with them. For this reason, photothermal Beam Deflection Spectrometry (BDS) technique for determination of materials' thermal properties together with other methods such as Energy Dispersive X-ray Scanning Electron Microscopy (SEM-EDX) for determining the chemical composition and sample structure, as well as optical microscopy to determine the particles size, were applied for characterization of sedimentary rocks. The rocks were obtained from the Andes south flank in the Venezuela's western basin. The validation of BDS applicability for determination of petrophysical properties of three sedimentary rocks of different texture and composition (all from Late Cretaceous associated with the Luna, Capacho and Colón-Mito Juan geological formations) was performed. The rocks' thermal properties were correlated to the microstructures and chemical composition of the examined samples.

Permeability and strength structure around an ancient exhumed subduction-zone fault

NASA Astrophysics Data System (ADS)

Kato, A.; Sakaguchi, A.; Yoshida, S.; Kaneda, Y.

2003-12-01

Investigating the transporting properties of subduction zone faults is crucial for understanding shear strength and slip-stability, or instability, of subduction zone faults. Despite the influence of pore pressure on a wide range of subduction-zone fault processes, few previous studies have evaluated the permeability structure around the fault placed in a well-defined structural context. In this study, the aim is to gain the entire permeability and the shear strength structure around the ancient subduction zone fault. We have conducted a series of permeability measurements and shear failure experiments in seismogenic environments using intact rocks sampled at the outcrop of an exhumed fault zone in the Cretaceous Shimanto accretionary complex, in Shikoku, SW Japan, where a typical evidence for seismic fault rock of pseudotachylyte has been demonstrated [Ikesawa et al., 2003]. This fault zone is located at boundary between the sandstone-dominant coherent unit of the Nonokawa Formation and the Okitsu mélange. The porosity of each rock sample is less than 1 %, except for the shear zone. Cylindrical test specimens (length = 40 mm, diameter = 20 mm) were cored to an accuracy of within 0.02 mm. Most of values of permeability were evaluated at confining pressure Pc of 140 MPa and pore pressure Pp of 115 MPa simulating the depth of 5 km (suprahydrostatic pore pressure). It is found that the permeability at room temperature shows the heterogeneous structure across the fault zone. The permeability of sandstone-dominant coherent unit is the lowest (10-19 m2) across the fault zone. In contrast, high shear zone has the highest permeability (10-16 m2). Following the increase in temperature, permeability evolution has been investigated. The permeability at 250oC continuously decreases with hold time for all types of rock specimens, and the reduction rate of permeability against hold time seems to become small with hold time. It seems that the reduction rate does not significantly depend on the rock types. The specimen was loaded at a strain rate of 2*E-6 /s under the conditions (Pc, Pp, T) = (140 MPa, 105 MPa, 250oC) to conduct the shear fracture experiments. High shear zone has a minimum value in strength profile. In contrast, the largest shear strength is observed at sandstone in coherent unit. From the seismic reflection surveys in the Nankai Trough, Park et al. [2002] delineated reflections with negative polarities beneath the Nankai accretionary prism 20-60 km landward of the frontal thrust, which are located deeper than the negative polarity décollement near the frontal thrust. They interpreted that the DSRs indicate the elevated fluid pressures. The fault zone studied in this paper is consistent with the duplex-model, and corresponds to the area where the décollement near the frontal thrust stepped down. Present results show the possibility that the coherent sandstone acts as a cap rock for fluid flow, and shear zone as a conduit for the flow, which leads to the elevated pore pressures along the roof thrust.

Three-scale analysis of the permeability of a natural shale

NASA Astrophysics Data System (ADS)

Davy, C. A.; Adler, P. M.

2017-12-01

The macroscopic permeability of a natural shale is determined by using structural measurements on three different scales. Transmission electron microscopy yields two-dimensional (2D) images with pixels smaller than 1 nm; these images are used to reconstruct 3D nanostructures. Three-dimensional focused ion beam-scanning electron microscopy (5.95- to 8.48-nm voxel size) provides 3D mesoscale pores of limited relative volume (1.71-5.9%). Micro-computed tomography (700-nm voxel size) provides information on the mineralogy of the shale, including the pores on this scale which do not percolate; synthetic 3D media are derived on the macroscopic scale by a training image technique. Permeability of the nanoscale, of the mesoscale structures and of their superposition is determined by solving the Stokes equation and this enables us to estimate the permeabilities of the 700-nm voxels located within the clay matrix. Finally, the Darcy equation is solved on synthetic 3D macroscale media to obtain the macroscopic permeability which is found in good agreement with experimental results obtained on the centimetric scale.

Polysulfone - CNT composite membrane with enhanced water permeability

NASA Astrophysics Data System (ADS)

Hirani, Bhakti; Kar, Soumitra; Aswal, V. K.; Bindal, R. C.; Goyal, P. S.

2018-04-01

Polymeric membranes are routinely used for water purification. The performance of these conventional membranes can be improved by incorporating nanomaterials, such as metal oxide nanoparticle and carbon nanotubes (CNTs). This manuscript reports the synthesis and characterization of polysulfone (Psf) based nanocomposite membranes where multi wall carbon nanotubes (MWCNTs) and oleic acid coated Fe3O4 nanoparticles have been impregnated onto the polymeric host matrix. The performance of the membranes was evaluated by water permeability and solute rejection measurements. It was observed that the permeability of Psf membrane increases three times at 0.1% loading of MWCNT without compromise in selectivity. It was further observed that the increase in permeability is not affected upon addition of Fe3O4 nanoparticles into the membrane. In order to get a better insight into the membrane microstructure, small angle neutron scattering (SANS) studies were carried out. There is a good correlation between the water permeability and the pore sizes of the membranes as measured using SANS.

Low-permeability concretes containing slag and silica fume.

DOT National Transportation Integrated Search

1993-01-01

Chloride-induced corrosion causes significant deterioration in transportation structures where uncoated reinforcing steel is used. Concretes having a very low permeability are used to prevent the intrusion of chlorides into concrete to the level of t...

Superconducting magnet and fabrication method

NASA Technical Reports Server (NTRS)

Israelsson, Ulf E. (Inventor); Strayer, Donald M. (Inventor)

1994-01-01

A method of trapping a field in a block of superconductor material, includes providing (i) a block of material defining a bore, (ii) a high permeability core within the bore that defines a low reluctance path through the bore, (iii) a high permeability external structure on the exterior of the block of material that defines a low reluctance path between opposite ends of the core, and (iv) an electromagnet configured to apply a magnetic field around the high permeability core. The method proceeds by energizing the electromagnet to produce an applied magnetic field around the high permeability core, cooling the block of material sufficiently to render the block of material superconducting, de-energizing the electromagnet to result in a trapped magnetic field, and at least partially removing the low reluctance path defined by the core and the external structure in order to increase the magnetic flux density of the trapped magnetic field.

Anisotropy of permeability of reservoir rocks over Miaoli area, NW Taiwan.

NASA Astrophysics Data System (ADS)

Bo-Siang, Xiong; Loung-Yie, Tsai

2013-04-01

The amount of the CO2 has risen since the Industrial Evolution. In order to reduce the amount of CO2 in atmosphere, CO2 sequestration is considered to be the most effective way. In recent years, research about subsurface storage of CO2 into geological formations has increased rapidly. Assessment of storage capability is needed before selecting a site for sequestration. Porosity and permeability are important assessment factors for CO2 sequestration in reservoir rocks. In order to improve the assessment, reservoir rock properties are important and need to be evaluated in advance. Porosity of sandstone is controlled by texture and degree of cementation, whereas permeability is controlled by pore-throat size, pore types and connectivity of pore throat. Sandstones of Miocene to Pleistocene in Miaoli area, NW Taiwan, were collected in this study. YOKO2 porosity/permeability detector is used to measure their permeability perpendicular and parallel to bedding planes under 3 to 60MPa confining pressure with Helium as media. Optical microscope and scanning electron microscope (SEM) were then used to observe the mineral composition, lithology, texture and pore type of sandstones, so as to explore the influence of rock properties on porosity and anisotropy of permeability, as well as the storage potential for CO2 sequestration in the future. The experimental results show that most of the horizontal permeability exceeds the vertical permeability and the anisotropy increases with increasing confining pressure. Mineral composition of sandstones studied were mainly quartz and lithic with little feldspar content. The pore types were mainly primary pores and micropores in this study. The correlation between quantity of macropores and permeability were higher than total porosity and permeability, mainly due to total porosity contains micropores which contribute little to permeability.

Generalized lattice Boltzmann model for flow through tight porous media with Klinkenberg's effect

NASA Astrophysics Data System (ADS)

Chen, Li; Fang, Wenzhen; Kang, Qinjun; De'Haven Hyman, Jeffrey; Viswanathan, Hari S.; Tao, Wen-Quan

2015-03-01

Gas slippage occurs when the mean free path of the gas molecules is in the order of the characteristic pore size of a porous medium. This phenomenon leads to Klinkenberg's effect where the measured permeability of a gas (apparent permeability) is higher than that of the liquid (intrinsic permeability). A generalized lattice Boltzmann model is proposed for flow through porous media that includes Klinkenberg's effect, which is based on the model of Guo et al. [Phys. Rev. E 65, 046308 (2002), 10.1103/PhysRevE.65.046308]. The second-order Beskok and Karniadakis-Civan's correlation [A. Beskok and G. Karniadakis, Microscale Thermophys. Eng. 3, 43 (1999), 10.1080/108939599199864 and F. Civan, Transp. Porous Med. 82, 375 (2010), 10.1007/s11242-009-9432-z] is adopted to calculate the apparent permeability based on intrinsic permeability and the Knudsen number. Fluid flow between two parallel plates filled with porous media is simulated to validate the model. Simulations performed in a heterogeneous porous medium with components of different porosity and permeability indicate that Klinkenberg's effect plays a significant role on fluid flow in low-permeability porous media, and it is more pronounced as the Knudsen number increases. Fluid flow in a shale matrix with and without fractures is also studied, and it is found that the fractures greatly enhance the fluid flow and Klinkenberg's effect leads to higher global permeability of the shale matrix.

Heterogeneity of hydrodynamic properties and groundwater circulation of a coastal andesitic volcanic aquifer controlled by tectonic induced faults and rock fracturing - Martinique island (Lesser Antilles - FWI)

NASA Astrophysics Data System (ADS)

Vittecoq, B.; Reninger, P. A.; Violette, S.; Martelet, G.; Dewandel, B.; Audru, J. C.

2015-10-01

We conducted a multidisciplinary study to analyze the structure and the hydrogeological functioning of an andesitic coastal aquifer and to highlight the importance of faults and associated rock fracturing on groundwater flow. A helicopter-borne geophysical survey with an unprecedented resolution (SkyTEM) was flown over this aquifer in 2013. TDEM resistivity, total magnetic intensity, geological and hydrogeological data from 30 boreholes and two pumping tests were correlated, including one which lasted an exceptional 15 months. We demonstrate that heterogeneous hydrodynamic properties and channelized flows result from tectonically-controlled aquifer compartmentalization along the structural directions of successive tectonic phases. Significant fracturing of the central compartment results in enhanced hydrodynamic properties of the aquifer and an inverse relationship between electrical resistivity and transmissivity. Basalts within the fractured compartment have lower resistivity and higher permeability than basalts outside the compartment. Pumping tests demonstrate that the key factor is the hydraulic conductivity contrast between compartments rather than the hydrodynamic properties of the fault structure. In addition, compartmentalization and associated transmissivity contrasts protect the aquifer from seawater intrusion. Finally, unlike basaltic volcanic islands, the age of the volcanic formations is not the key factor that determines hydrodynamic properties of andesitic islands. Basalts that are several million years old (15 Ma here) have favorable hydrodynamic properties that are generated or maintained by earthquakes/faulting that result from active subduction beneath these islands, which is superimposed on their primary permeability.

Gastrointestinal (GI) permeability correlates with trait anxiety and urinary norepinephrine/creatinine (CR)ratio in children with functional abdominal pain (FAP)and irritable bowel syndrome (IBS) but not in controls

USDA-ARS?s Scientific Manuscript database

FAP and IBS affect 10–15% of school age children and bear many similarities to irritable bowel syndrome (IBS) in adults (e.g., functional pain, visceral hyperalgesia). Animal models of IBS have suggested a relationship between neonatal stress/anxiety and increased GI permeability later in life. We h...

Impact of geometrical properties on permeability and fluid phase distribution in porous media

NASA Astrophysics Data System (ADS)

Lehmann, P.; Berchtold, M.; Ahrenholz, B.; Tölke, J.; Kaestner, A.; Krafczyk, M.; Flühler, H.; Künsch, H. R.

2008-09-01

To predict fluid phase distribution in porous media, the effect of geometric properties on flow processes must be understood. In this study, we analyze the effect of volume, surface, curvature and connectivity (the four Minkowski functionals) on the hydraulic conductivity and the water retention curve. For that purpose, we generated 12 artificial structures with 800 3 voxels (the units of a 3D image) and compared them with a scanned sand sample of the same size. The structures were generated with a Boolean model based on a random distribution of overlapping ellipsoids whose size and shape were chosen to fulfill the criteria of the measured functionals. The pore structure of sand material was mapped with X-rays from synchrotrons. To analyze the effect of geometry on water flow and fluid distribution we carried out three types of analysis: Firstly, we computed geometrical properties like chord length, distance from the solids, pore size distribution and the Minkowski functionals as a function of pore size. Secondly, the fluid phase distribution as a function of the applied pressure was calculated with a morphological pore network model. Thirdly, the permeability was determined using a state-of-the-art lattice-Boltzmann method. For the simulated structure with the true Minkowski functionals the pores were larger and the computed air-entry value of the artificial medium was reduced to 85% of the value obtained from the scanned sample. The computed permeability for the geometry with the four fitted Minkowski functionals was equal to the permeability of the scanned image. The permeability was much more sensitive to the volume and surface than to curvature and connectivity of the medium. We conclude that the Minkowski functionals are not sufficient to characterize the geometrical properties of a porous structure that are relevant for the distribution of two fluid phases. Depending on the procedure to generate artificial structures with predefined Minkowski functionals, structures differing in pore size distribution can be obtained.

Predicting phenolic acid absorption in Caco-2 cells: a theoretical permeability model and mechanistic study.

PubMed

Farrell, Tracy L; Poquet, Laure; Dew, Tristan P; Barber, Stuart; Williamson, Gary

2012-02-01

There is a considerable need to rationalize the membrane permeability and mechanism of transport for potential nutraceuticals. The aim of this investigation was to develop a theoretical permeability equation, based on a reported descriptive absorption model, enabling calculation of the transcellular component of absorption across Caco-2 monolayers. Published data for Caco-2 permeability of 30 drugs transported by the transcellular route were correlated with the descriptors 1-octanol/water distribution coefficient (log D, pH 7.4) and size, based on molecular mass. Nonlinear regression analysis was used to derive a set of model parameters a', β', and b' with an integrated molecular mass function. The new theoretical transcellular permeability (TTP) model obtained a good fit of the published data (R² = 0.93) and predicted reasonably well (R² = 0.86) the experimental apparent permeability coefficient (P(app)) for nine non-training set compounds reportedly transported by the transcellular route. For the first time, the TTP model was used to predict the absorption characteristics of six phenolic acids, and this original investigation was supported by in vitro Caco-2 cell mechanistic studies, which suggested that deviation of the P(app) value from the predicted transcellular permeability (P(app)(trans)) may be attributed to involvement of active uptake, efflux transporters, or paracellular flux.

General slip regime permeability model for gas flow through porous media

NASA Astrophysics Data System (ADS)

Zhou, Bo; Jiang, Peixue; Xu, Ruina; Ouyang, Xiaolong

2016-07-01

A theoretical effective gas permeability model was developed for rarefied gas flow in porous media, which holds over the entire slip regime with the permeability derived as a function of the Knudsen number. This general slip regime model (GSR model) is derived from the pore-scale Navier-Stokes equations subject to the first-order wall slip boundary condition using the volume-averaging method. The local closure problem for the volume-averaged equations is studied analytically and numerically using a periodic sphere array geometry. The GSR model includes a rational fraction function of the Knudsen number which leads to a limit effective permeability as the Knudsen number increases. The mechanism for this behavior is the viscous fluid inner friction caused by converging-diverging flow channels in porous media. A linearization of the GSR model leads to the Klinkenberg equation for slightly rarefied gas flows. Finite element simulations show that the Klinkenberg model overestimates the effective permeability by as much as 33% when a flow approaches the transition regime. The GSR model reduces to the unified permeability model [F. Civan, "Effective correlation of apparent gas permeability in tight porous media," Transp. Porous Media 82, 375 (2010)] for the flow in the slip regime and clarifies the physical significance of the empirical parameter b in the unified model.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Davis, J.M.

Three outcrop studies were conducted in deposits of different depositional environments. At each site, permeability measurements were obtained with an air-minipermeameter developed as part of this study. In addition, the geological units were mapped with either surveying, photographs, or both. Geostatistical analysis of the permeability data was performed to estimate the characteristics of the probability distribution function and the spatial correlation structure. The information obtained from the geological mapping was then compared with the results of the geostatistical analysis for any relationships that may exist. The main field site was located in the Albuquerque Basin of central New Mexico atmore » an outcrop of the Pliocene-Pleistocene Sierra Ladrones Formation. The second study was conducted on the walls of waste pits in alluvial fan deposits at the Nevada Test Site. The third study was conducted on an outcrop of an eolian deposit (miocene) south of Socorro, New Mexico. The results of the three studies were then used to construct a conceptual model relating depositional environment to geostatistical models of heterogeneity. The model presented is largely qualitative but provides a basis for further hypothesis formulation and testing.« less

The permeaiblity of fault-zones:the role of stylolites as incipit of dissolution

NASA Astrophysics Data System (ADS)

Magni, Silvana

2017-04-01

Fault zones and fractures play an important role in fluid circulation and then in dissolution, acting as barriers or conductors depending on the distribution of other features associated with them and on the specific conditions (lithological and structural, as well). The fault zone have a high permeability only in the early stages of the movement but shortly after recrystallization and reprecipitation processes greatly reduce the permeability within them. Indeed the dissolution is a complex phenomenon which involves both several factors that lead to the formation of caves and karst systems often complex. Traditionally, in the field of karst , the dissolution is associated with extensional structures such as faults and joints believing that they are more favorable to the water circulation. In this context compressional tectonic structures, as like the stylolites, are never considered. In fact the stylolites play an important role in the fluid circulation (Rawling, 2001) and in particular in the incipit of dissolution and then of the karst. We have so focused our research on the study of permeability of four fault zones in a karst area of Alte Murge (South Italy). Through a detailed structural analysis in the field and using the method of Caine (Caine, 1996), we reconstructed the permeability of the four previous fault zones. Our attention was focused on faults, joints and on stylolites. Contrary to the literature the dissolution and therefore the karst was mainly found along the stylolites and only secondarily along faults. No sign of dissolution was found along the joints. In the context of karst studies, the stylolites, which are structures due to pressure solution has never been taken into account, thinking that in compressional structures is not possible any circulation of water and that therefore there is no fluid-rock interaction. No consideration has been given to the enormous role that the pressure and the microfluidic that are created have in this context. The styololites, the focus of our research open important questions about their exact role as incipit of the dissolution. Through petrophysical analysis and microstructural we are characterizing the porosity and permeability near the stylolites. Recently, fluid-rock interactions and their impact on carbonate rocks is becoming very important because of an increasing interest it the carbonate reservoirs as a consequence of a progressive deterioration of the quantity and quality of the groundwater due to increasing pollution phenomena. In fact the aquifers represent about 40% of the drinking water resources and their importance will increase in coming years. REFERENCESE Caine, J.S.,Evans, J.P., Forster,C.B. (1996). Fault zone architecture and permeability structure. Geology 24, 1025-1032 Rawling,G.C., Goodwin,L.B., Wilson,J.L. (2001). Internal architecture permeability structure and hydrogeologic significance of contrasting fault-zone types. Geology 29, 43-46

Gas Permeable Chemochromic Compositions for Hydrogen Sensing

NASA Technical Reports Server (NTRS)

Mohajeri, Nahid (Inventor); Muradov, Nazim (Inventor); Tabatabaie-Raissi, Ali (Inventor); Bokerman, Gary (Inventor)

2013-01-01

A (H2) sensor composition includes a gas permeable matrix material intermixed and encapsulating at least one chemochromic pigment. The chemochromic pigment produces a detectable change in color of the overall sensor composition in the presence of H2 gas. The matrix material provides high H2 permeability, which permits fast permeation of H2 gas. In one embodiment, the chemochromic pigment comprises PdO/TiO2. The sensor can be embodied as a two layer structure with the gas permeable matrix material intermixed with the chemochromic pigment in one layer and a second layer which provides a support or overcoat layer.

Human Disc Nucleus Properties and Vertebral Endplate Permeability

PubMed Central

Rodriguez, Azucena G.; Slichter, Chloe K.; Acosta, Frank L.; Rodriguez-Soto, Ana E.; Burghardt, Andrew J.; Majumdar, Sharmila; Lotz, Jeffrey C.

2010-01-01

Study of human cadaveric discs quantifying endplate permeability and porosity and correlating these with measures of disc quality: cell density, proteoglycan content, and overall degeneration. Permeability and porosity increased with age and were not correlated with cell density or overall degeneration, suggesting that endplate calcification may not accelerate disc degeneration. Study Design Experimental quantification of relationships between vertebral endplate morphology, permeability, disc cell density, glycosaminoglycan content and degeneration in samples harvested from human cadaveric spines. Objective To test the hypothesis that variation in endplate permeability and porosity contribute to changes in intervertebral disc cell density and overall degeneration. Summary of Background Data Cells within the intervertebral disc are dependent on diffusive exchange with capillaries in the adjacent vertebral bone. Previous findings suggest that blocked routes of transport negatively affect disc quality, yet there are no quantitative relationships between human vertebral endplate permeability, porosity, cell density and disc degeneration. Such relationships would be valuable for clarifying degeneration risk factors, and patient features that may impede efforts at disc tissue engineering. Methods Fifty-one motion segments were harvested from 13 frozen cadaveric human lumbar spines (32 to 85 years) and classified for degeneration using the MRI-based Pfirrmann scale. A cylindrical core was harvested from the center of each motion segment that included vertebral bony and cartilage endplates along with adjacent nucleus tissue. The endplate mobility, a type of permeability, was measured directly using a custom-made permeameter before and after the cartilage endplate was removed. Cell density within the nucleus tissue was estimated using the picogreen method while the nuclear GAG content was quantified using the DMMB technique. Specimens were imaged at 8 μm resolution using microCT, bony porosity was calculated. Analysis of variance, linear regression, and multiple comparison tests were used to analyze the data. Results Nucleus cell density increased as the disc height decreased (R2=0.13; p=0.01) but was not related to subchondral bone porosity (p>0.5), total mobility (p>0.4) or age (p>0.2). When controlling for disc height however, a significant, negative effect of age on cell density was observed (p=0.03). In addition to this, GAG content decreased with age non-linearly (R2=0.83, p<0.0001) and a cell function measurement, GAGs/cell decreased with degeneration (R2=0.24; p<0.0001). Total mobility (R2=0.14; p<0.01) and porosity (R2=0.1, p<0.01) had a positive correlation with age. Conclusion Although cell density increased with degeneration, cell function indicated that GAGs/cell decreased. Since permeability and porosity increase with age and degeneration, this implies that cell dysfunction, rather than physical barriers to transport, accelerate disc disease. PMID:21240044

Classical transport in disordered systems

NASA Astrophysics Data System (ADS)

Papaioannou, Antonios

This thesis reports on the manifestation of structural disorder on molecular transport and it consists of two parts. Part I discusses the relations between classical transport and the underlying structural complexity of the system. Both types of molecular diffusion, namely Gaussian and non- Gaussian are presented and the relevant time regimes are discussed. In addition the concept of structural universality is introduced and connected with the diffusion metrics. One of the most robust techniques for measuring molecular mean square displacements is magnetic resonance. This method requires encoding and subsequently reading out after an experimentally controlled time, a phase φ to the spins using magnetic field gradients. The main limitation for probing short diffusion lengths L(t) ˜ 1micro m with magnetic resonance is the requirement to encode and decode the phase φ in very short time intervals. Therefore, to probe such displacements a special probe was developed equipped with a gradient coil capable of delivering magnetic field gradients of approximately 90 G/cmA . The design of the probe is reported. Part I also includes a discussion of experiments of transport in two qualitatively different disordered phantoms and reports on a direct observation of universality in one-dimension. The results reveal the universal power law scaling of the diffusion coefficient at the long-time regime and illustrate the essence of structural universality by experimentally determining the structure correlation function of the phantoms. In addition, the scaling of the diffusive permeability of the phantoms with respect to the pore size is investigated. Additional work presented includes a detailed study of adsorption of methane gas in Vycor disordered glass. The techniques described in Part I of this thesis are widely used for measuring structural parameters of porous media, such as the surface-to-volume ratio or diffusive permeability. Part II of this thesis discusses the biophysical application of diffusion in disordered systems in the field of bioengineering. Elastin-based bioengineered scaffolds, which are mainly used for tissue and bone regeneration, must be able to deliver nutrients to the native tissue. It is therefore essential to quantitatively assess their structural parameters such as their surface-to-volume ratio and diffusive permeability. Part II focuses on a detailed study of structure and dynamics of elastin, the principle protein component found in tissues and one of the main components for scaffold engineering, using NMR 13C-MAS techniques. Lastly, the second half of Part II, discusses preliminary experiments of diffusion in elastin-based films.

Synthesis of the Hydrogeologic Framework of the Floridan Aquifer System and Delineation of a Major Avon Park Permeable Zone in Central and Southern Florida

USGS Publications Warehouse

Reese, Ronald S.; Richardson, Emily

2008-01-01

The carbonate Floridan aquifer system of central and southern Florida (south of a latitude of about 29 degrees north) is an invaluable resource with a complex framework that has previously been mapped and managed primarily in a subregional context according to geopolitical boundaries. As interest and use of the Floridan aquifer system in this area increase, a consistent regional hydrogeologic framework is needed for effective management across these boundaries. This study synthesizes previous studies on the Floridan aquifer system and introduces a new regional hydrogeologic conceptual framework, linking physical relations between central and southern Florida and between the west and east coastal areas. The differences in hydrogeologic nomenclature and interpretation across the study area from previous studies were identified and resolved. The Floridan aquifer system consists of the Upper Floridan aquifer, middle confining unit, and Lower Floridan aquifer. This study introduces and delineates a new major, regional productive zone or subaquifer, referred to as the Avon Park permeable zone. This zone is contained within the middle confining unit and synthesizes an extensive zone that has been referred to differently in different parts of the study area in previous studies. The name of this zone derives from the description of this zone as the ?Avon Park highly permeable zone? in west-central Florida in a previous study. Additionally, this zone has been identified previously in southeastern Florida as the ?middle Floridan aquifer.? An approximately correlative or approximate time-stratigraphic framework was developed and was used to provide guidance in the identification and determination of aquifers, subaquifers, and confining units within the Floridan aquifer system and to determine their structural relations. Two stratigraphic marker horizons within the Floridan aquifer system and a marker unit near the top of the aquifer system were delineated or mapped. The marker horizons are correlative points in the stratigraphic section rather than a unit with upper and lower boundaries. The two marker horizons and the marker unit originated from previous studies, wherein they were based on lithology and correlation of geophysical log signatures observed in boreholes. The depths of these marker horizons and the marker unit were extended throughout the study area by correlation of natural gamma-ray logs between wells. The Floridan aquifer system includes, in ascending order, the upper part of the Cedar Keys Formation, Oldsmar Formation, Avon Park Formation, Ocala Limestone, Suwannee Limestone, and in some areas the lower part of the Hawthorn Group. The first marker horizon is in the lower part of the aquifer system near the top of the Oldsmar Formation and is associated with the top of distinctive glauconitic limestone beds that are present in some regions; the second marker horizon is near the middle of the aquifer system in the middle part of the Avon Park Formation. The marker unit lies at the top of a basal unit in the Hawthorn Group and provides a stratigraphic constraint for the top of the Floridan aquifer system. The marker horizons do not have distinguishing lithologic characteristics or a characteristic gamma-ray log pattern in all areas but are still thought to be valid because of correlation of the entire section and correlation of all sufficiently deep wells with gamma-ray logs. The Avon Park permeable zone is contained entirely within the Avon Park Formation; its position within the section is either near the middle Avon Park marker horizon or within a thick part of the section that extends several hundred feet above the marker horizon. This subaquifer is present over most of the study area and characteristically consists of thick units of dolostone and interbedded limestone, and limestone in its upper part. Permeability is primarily associated with fracturing. This subaquifer is well developed in west-cen

Permeability of the blood-brain barrier predicts conversion from optic neuritis to multiple sclerosis.

PubMed

Cramer, Stig P; Modvig, Signe; Simonsen, Helle J; Frederiksen, Jette L; Larsson, Henrik B W

2015-09-01

Optic neuritis is an acute inflammatory condition that is highly associated with multiple sclerosis. Currently, the best predictor of future development of multiple sclerosis is the number of T2 lesions visualized by magnetic resonance imaging. Previous research has found abnormalities in the permeability of the blood-brain barrier in normal-appearing white matter of patients with multiple sclerosis and here, for the first time, we present a study on the capability of blood-brain barrier permeability in predicting conversion from optic neuritis to multiple sclerosis and a direct comparison with cerebrospinal fluid markers of inflammation, cellular trafficking and blood-brain barrier breakdown. To this end, we applied dynamic contrast-enhanced magnetic resonance imaging at 3 T to measure blood-brain barrier permeability in 39 patients with monosymptomatic optic neuritis, all referred for imaging as part of the diagnostic work-up at time of diagnosis. Eighteen healthy controls were included for comparison. Patients had magnetic resonance imaging and lumbar puncture performed within 4 weeks of onset of optic neuritis. Information on multiple sclerosis conversion was acquired from hospital records 2 years after optic neuritis onset. Logistic regression analysis showed that baseline permeability in normal-appearing white matter significantly improved prediction of multiple sclerosis conversion (according to the 2010 revised McDonald diagnostic criteria) within 2 years compared to T2 lesion count alone. There was no correlation between permeability and T2 lesion count. An increase in permeability in normal-appearing white matter of 0.1 ml/100 g/min increased the risk of multiple sclerosis 8.5 times whereas having more than nine T2 lesions increased the risk 52.6 times. Receiver operating characteristic curve analysis of permeability in normal-appearing white matter gave a cut-off of 0.13 ml/100 g/min, which predicted conversion to multiple sclerosis with a sensitivity of 88% and specificity of 72%. We found a significant correlation between permeability and the leucocyte count in cerebrospinal fluid as well as levels of CXCL10 and MMP9 in the cerebrospinal fluid. These findings suggest that blood-brain barrier permeability, as measured by magnetic resonance imaging, may provide novel pathological information as a marker of neuroinflammation related to multiple sclerosis, to some extent reflecting cellular permeability of the blood-brain barrier, whereas T2 lesion count may more reflect the length of the subclinical pre-relapse phase.See Naismith and Cross (doi:10.1093/brain/awv196) for a scientific commentary on this article. © The Author (2015). Published by Oxford University Press on behalf of the Guarantors of Brain.

Fresh and Salt Water Distribution in Passive Margin Sediments: Insights from Iodp Expedition 313 ON the New Jersey Margin

NASA Astrophysics Data System (ADS)

Lofi, J.; Inwood, J.; Proust, J.; Monteverde, D.; Loggia, D.; Basile, C.; Hayashi, T.; Stadler, S.; Fehr, A.; Pezard, P.

2012-12-01

For the first time in the history of international scientific drillings, the Integrated Ocean Drilling Program (IODP) mission-specific platform (MSP) Expedition 313 drilled three 631-755 m-deep boreholes on the middle shelf of a clastic passive margin. This expedition gathered a full set of geophysical data tied to drillcores with 80% of recovery. It offers a unique opportunity to access the internal structure of a siliciclastic system, at scales ranging from the matrix to the margin, and to correlate the geological skeleton with the spatial distribution and salinity of saturating fluids. In addition to the discovery of very low salinity pore water (<3g/l) at depths exceeding 400 m below the middle shelf, this expedition provides evidence for a multi-layered reservoir, with fresh/brackish water intervals alternating vertically with salty intervals. Our observations suggest that the processes controlling salinity distribution are strongly influenced by lithology, porosity and permeability. Saltier pore waters are recovered in less porous, more permeable, intervals whereas fresher pore waters are recovered in more porous, less permeable, intervals. Pore water concentrations are inversely correlated to the Thorium content, with high salinities in low Th intervals (i.e. sandy formations). The transition from fresher to saltier intervals is often marked by cemented horizons acting as permeability barrier. In the lower part of some holes, the salinity varies independently of lithology, suggesting different mechanisms and/or sources of salinity. We have developed a 2D model of permeability distribution along a dip transect of the margin, extrapolated from combined clinoform geometries observed on seismic data and sedimentary facies described on cores. This model clearly illustrates the importance of taking into account the spatial heterogeneity of geological system at several scales. Lithology reflects permeability at a small scale whereas seismic facies and system tracts can be used to infer the reservoir geometry at a larger scale. Four main reservoirs (R1 to R4) that are relatively disconnected have been identified. These are essentially developed in coarse-grained deposits observed either in some clinoform topsets (R4), in upper foresets (R2, R3), or in both of them (R1). R2 to R4 contain salty water while the most proximal reservoir R1, located close to the coastline, is saturated with fresh water, and may form the seaward extension of onshore aquifers. Each of these four reservoirs is separated by confining units of varied thicknesses and of relatively broad spatial extension. At the Expedition 313 drilling sites, the fresh waters stored in confining units have a post-deposition age and may have a fossil origin (Pleistocene low-stands?), whereas saltier water recovered in distal reservoirs (R2 to R4) penetrated at a later stage. Further work must be done to clarify the emplacement mechanisms. Future studies should focus on the inclusion of our 2D permeability model in a groundwater model, in order to examine the specific flow processes that are active in this environment. This research used samples and data provided by the Integrated Ocean Drilling Program (IODP) and the International Continental Scientific Drilling Program (ICDP).

Corneal and conjunctival drug permeability: Systematic comparison and pharmacokinetic impact in the eye.

PubMed

Ramsay, Eva; Del Amo, Eva M; Toropainen, Elisa; Tengvall-Unadike, Unni; Ranta, Veli-Pekka; Urtti, Arto; Ruponen, Marika

2018-07-01

On the surface of the eye, both the cornea and conjunctiva are restricting ocular absorption of topically applied drugs, but barrier contributions of these two membranes have not been systemically compared. Herein, we studied permeability of 32 small molecular drug compounds across an isolated porcine cornea and built a quantitative structure-property relationship (QSPR) model for the permeability. Corneal drug permeability (data obtained for 25 drug molecules) showed a 52-fold range in permeability (0.09-4.70 × 10 -6  cm/s) and the most important molecular descriptors in predicting the permeability were hydrogen bond donor, polar surface area and halogen ratio. Corneal permeability values were compared to their conjunctival drug permeability values. Ocular drug bioavailability and systemic absorption via conjunctiva were predicted for this drug set with pharmacokinetic calculations. Drug bioavailability in the aqueous humour was simulated to be <5% and trans-conjunctival systemic absorption was 34-79% of the dose. Loss of drug across the conjunctiva to the blood circulation restricts significantly ocular drug bioavailability and, therefore, ocular absorption does not increase proportionally with the increasing corneal drug permeability. Copyright © 2018 Elsevier B.V. All rights reserved.

A new structure of permeable pavement for mitigating urban heat island.

PubMed

Liu, Yong; Li, Tian; Peng, Hangyu

2018-09-01

The urban heat island (UHI) effect has been a great threat to human habitation, and how to mitigate this problem has been a global concern over decades. This paper addresses the cooling effect of a novel permeable pavement called evaporation-enhancing permeable pavement, which has capillary columns in aggregate and a liner at the bottom. To explore the efficiency of mitigating the UHI, bench-scale permeable pavement units with capillary columns were developed and compared with conventional permeable pavement. Criteria of capillary capacities of the column, evaporation rates, and surface temperature of the pavements were monitored under simulated rainfall and Shanghai local weather conditions. Results show the capillary column was important in increasing evaporation by lifting water from the bottom to the surface, and the evaporation-enhancing permeable pavement was cooler than a conventional permeable pavement by as much as 9.4°C during the experimental period. Moreover, the cooling effect of the former pavement could persist more than seven days under the condition of no further rainfall. Statistical analysis result reveals that evaporation-enhancing permeable pavement can mitigate the UHI effect significantly more than a conventional permeable pavement. Copyright © 2018 Elsevier B.V. All rights reserved.

Scale dependence of in-situ permeability measurements in the Nankai accretionary prism: The role of fractures

NASA Astrophysics Data System (ADS)

Boutt, David F.; Saffer, Demian; Doan, Mai-Linh; Lin, Weiren; Ito, Takatoshi; Kano, Yasuyuki; Flemings, Peter; McNeill, Lisa C.; Byrne, Timothy; Hayman, Nicholas W.; Moe, Kyaw Thu

2012-04-01

Modeling studies suggest that fluid permeability is an important control on the maintenance and distribution of pore fluid pressures at subduction zones generated through tectonic loading. Yet, to date, few data are available to constrain permeability of these materials, at appropriate scales. During IODP Expedition 319, downhole measurements of permeability within the uppermost accretionary wedge offshore SW Japan were made using a dual-packer device to isolate 1 m sections of borehole at a depth of 1500 m below sea floor. Analyses of pressure transients using numerical models suggest a range of in-situ fluid permeabilities (5E-15-9E-17 m2). These values are significantly higher than those measured on core samples (2E-19 m2). Borehole imagery and cores suggests the presence of multiple open fractures at this depth of measurement. These observations suggest that open permeable natural fractures at modest fracture densities could be important contributors to overall prism permeability structure at these scales.

Urban permeable pavement system design based on “sponge city” concept

NASA Astrophysics Data System (ADS)

Yu, M. M.; Zhu, J. W.; Gao, W. F.; Xu, D. P.; Zhao, M.

2017-08-01

Based on the “sponge city” concept, to implement the goal of building a city within the city to solve the sponge waterlogging, rational utilization of water resources, reduce water pollution this paper, combined with the city planning level in China, establishes the design system of city road flooding from the macro, medium and micro level, explore the design method of city water permeable pavement system, and has a practical significance the lower flood risk water ecological problems. On the macro level, we established an urban pavement sponge system under the regional ecological pattern by “spot permeable open space - low impact developing rain water road system - catchment area and catchment wetland”. On a medium level, this paper proposed the permeable suitability of pavement and the planning control indicators when combined with urban functional districts to conduct permeable pavement roads plans and controls. On micro level, the paper studied sponge technology design of permeable pavement from road structure, surface material, and other aspects aimed at the pavement permeability requirements.

The effect of air permeability characteristics of protective garments on the induced physiological strain under exercise-heat stress.

PubMed

Epstein, Yoram; Heled, Yuval; Ketko, Itay; Muginshtein, Jeni; Yanovich, Ran; Druyan, Amit; Moran, Daniel S

2013-08-01

The high values of thermal resistance (Rct) and/or vapor resistance (Ret) of chemical protective clothing (CPC) induce a considerable thermal stress. The present study compared the physiological strain induced by CPCs and evaluates the relative importance of the fabrics' Rct, Ret, and air permeability in determining heat strain. Twelve young (20-30 years) healthy, heat-acclimated male subjects were exposed fully encapsulated for 3h daily to an exercise-heat stress (35°C and 30% relative humidity, walking on a motor-driven treadmill at a pace of 5 km h(1) and a 4% inclination, in a work-rest cycle of 45 min work and 15 min rest). Two bipack CPCs (PC1 and PC2) were tested and the results were compared with those attained by two control suits-a standard cotton military BDU (CO1) and an impermeable material suit (CO2). The physiological burden imposed by the two bilayer garments was within the boundaries set by the control conditions. Overall, PC2 induced a lower strain, which was closer to CO1, whereas PC1 was closer to CO2. Air permeability of the PC2 cloth was almost three times higher than that of PC1, enabling a better heat dissipation and consequently a lower physiological strain. Furthermore, air permeability characteristic of the fabrics, which is associated with its construction and weave, significantly correlated with the physiological strain, whereas the correlation with Rct, Ret, and weight was poor. The results emphasize the importance of air permeability in reducing the physiological strain induced by CPCs.

Permeability of continental crust influenced by internal and external forcing

USGS Publications Warehouse

Rojstaczer, S.A.; Ingebritsen, S.E.; Hayba, D.O.

2008-01-01

The permeability of continental crust is so highly variable that it is often considered to defy systematic characterization. However, despite this variability, some order has been gleaned from globally compiled data. What accounts for the apparent coherence of mean permeability in the continental crust (and permeability-depth relations) on a very large scale? Here we argue that large-scale crustal permeability adjusts to accommodate rates of internal and external forcing. In the deeper crust, internal forcing - fluxes induced by metamorphism, magmatism, and mantle degassing - is dominant, whereas in the shallow crust, external forcing - the vigor of the hydrologic cycle - is a primary control. Crustal petrologists have long recognized the likelihood of a causal relation between fluid flux and permeability in the deep, ductile crust, where fluid pressures are typically near-lithostatic. It is less obvious that such a relation should pertain in the relatively cool, brittle upper crust, where near-hydrostatic fluid pressures are the norm. We use first-order calculations and numerical modeling to explore the hypothesis that upper-crustal permeability is influenced by the magnitude of external fluid sources, much as lower-crustal permeability is influenced by the magnitude of internal fluid sources. We compare model-generated permeability structures with various observations of crustal permeability. ?? 2008 The Authors Journal compilation ?? 2008 Blackwell Publishing Ltd.

Oral Delivery of Lipophilic Drugs: The Tradeoff between Solubility Increase and Permeability Decrease When Using Cyclodextrin-Based Formulations

PubMed Central

Beig, Avital; Agbaria, Riad; Dahan, Arik

2013-01-01

The purpose of this study was to investigate the impact of oral cyclodextrin-based formulation on both the apparent solubility and intestinal permeability of lipophilic drugs. The apparent solubility of the lipophilic drug dexamethasone was measured in the presence of various HPβCD levels. The drug’s permeability was measured in the absence vs. presence of HPβCD in the rat intestinal perfusion model, and across Caco-2 cell monolayers. The role of the unstirred water layer (UWL) in dexamethasone’s absorption was studied, and a simplified mass-transport analysis was developed to describe the solubility-permeability interplay. The PAMPA permeability of dexamethasone was measured in the presence of various HPβCD levels, and the correlation with the theoretical predictions was evaluated. While the solubility of dexamethasone was greatly enhanced by the presence of HPβCD (K1∶1 = 2311 M−1), all experimental models showed that the drug’s permeability was significantly reduced following the cyclodextrin complexation. The UWL was found to have no impact on the absorption of dexamethasone. A mass transport analysis was employed to describe the solubility-permeability interplay. The model enabled excellent quantitative prediction of dexamethasone’s permeability as a function of the HPβCD level. This work demonstrates that when using cyclodextrins in solubility-enabling formulations, a tradeoff exists between solubility increase and permeability decrease that must not be overlooked. This tradeoff was found to be independent of the unstirred water layer. The transport model presented here can aid in striking the appropriate solubility-permeability balance in order to achieve optimal overall absorption. PMID:23874557

Long-term stormwater quantity and quality performance of permeable pavement systems.

PubMed

Brattebo, Benjamin O; Booth, Derek B

2003-11-01

This study examined the long-term effectiveness of permeable pavement as an alternative to traditional impervious asphalt pavement in a parking area. Four commercially available permeable pavement systems were evaluated after 6 years of daily parking usage for structural durability, ability to infiltrate precipitation, and impacts on infiltrate water quality. All four permeable pavement systems showed no major signs of wear. Virtually all rainwater infiltrated through the permeable pavements, with almost no surface runoff. The infiltrated water had significantly lower levels of copper and zinc than the direct surface runoff from the asphalt area. Motor oil was detected in 89% of samples from the asphalt runoff but not in any water sample infiltrated through the permeable pavement. Neither lead nor diesel fuel were detected in any sample. Infiltrate measured 5 years earlier displayed significantly higher concentrations of zinc and significantly lower concentrations of copper and lead.

Regional-dependent intestinal permeability and BCS classification: elucidation of pH-related complexity in rats using pseudoephedrine.

PubMed

Fairstein, Moran; Swissa, Rotem; Dahan, Arik

2013-04-01

Based on its lower Log P value relative to metoprolol, a marker for the low/high-permeability (P(eff)) class boundary, pseudoephedrine was provisionally classified as BCS low-permeability compound. On the other hand, following oral administration, pseudoephedrine fraction dose absorbed (F(abs)) and systemic bioavailability approaches 100%. This represents a challenge to the generally recognized P(eff)-F(abs) correlation. The purpose of this study was to elucidate the underlying mechanisms behind the confusion in pseudoephedrine's BCS classification. Pseudoephedrine's BCS solubility class was determined, and its physicochemical properties and intestinal permeability were thoroughly investigated, both in vitro and in vivo in rats, considering the complexity of the whole of the small intestine. Pseudoephedrine was found to be unequivocally a high-solubility compound. All of the permeability studies revealed similar phenomenon; at any given intestinal segment/pH, the permeability of metoprolol was higher than that of pseudoephedrine, however, as the intestinal region becomes progressively distal, and the pH gradually increases, pseudoephedrine's permeability rises above that of metoprolol in the former segment. This unique permeability pattern likely explains pseudoephedrine's complete absorption. In conclusion, pseudoephedrine is a BCS Class I compound; no discrepancy between P(eff) and F(abs) is involved in its absorption. Rather, it reflects the complexity behind P(eff) when considering the whole of the intestine. We propose to allow high-permeability classification to drugs with P(eff) that matches/exceeds the low/high class benchmark anywhere throughout the intestinal tract and not restricted necessarily to the jejunum.

ToxiM: A Toxicity Prediction Tool for Small Molecules Developed Using Machine Learning and Chemoinformatics Approaches.

PubMed

Sharma, Ashok K; Srivastava, Gopal N; Roy, Ankita; Sharma, Vineet K

2017-01-01

The experimental methods for the prediction of molecular toxicity are tedious and time-consuming tasks. Thus, the computational approaches could be used to develop alternative methods for toxicity prediction. We have developed a tool for the prediction of molecular toxicity along with the aqueous solubility and permeability of any molecule/metabolite. Using a comprehensive and curated set of toxin molecules as a training set, the different chemical and structural based features such as descriptors and fingerprints were exploited for feature selection, optimization and development of machine learning based classification and regression models. The compositional differences in the distribution of atoms were apparent between toxins and non-toxins, and hence, the molecular features were used for the classification and regression. On 10-fold cross-validation, the descriptor-based, fingerprint-based and hybrid-based classification models showed similar accuracy (93%) and Matthews's correlation coefficient (0.84). The performances of all the three models were comparable (Matthews's correlation coefficient = 0.84-0.87) on the blind dataset. In addition, the regression-based models using descriptors as input features were also compared and evaluated on the blind dataset. Random forest based regression model for the prediction of solubility performed better ( R 2 = 0.84) than the multi-linear regression (MLR) and partial least square regression (PLSR) models, whereas, the partial least squares based regression model for the prediction of permeability (caco-2) performed better ( R 2 = 0.68) in comparison to the random forest and MLR based regression models. The performance of final classification and regression models was evaluated using the two validation datasets including the known toxins and commonly used constituents of health products, which attests to its accuracy. The ToxiM web server would be a highly useful and reliable tool for the prediction of toxicity, solubility, and permeability of small molecules.

ToxiM: A Toxicity Prediction Tool for Small Molecules Developed Using Machine Learning and Chemoinformatics Approaches

PubMed Central

Sharma, Ashok K.; Srivastava, Gopal N.; Roy, Ankita; Sharma, Vineet K.

2017-01-01

The experimental methods for the prediction of molecular toxicity are tedious and time-consuming tasks. Thus, the computational approaches could be used to develop alternative methods for toxicity prediction. We have developed a tool for the prediction of molecular toxicity along with the aqueous solubility and permeability of any molecule/metabolite. Using a comprehensive and curated set of toxin molecules as a training set, the different chemical and structural based features such as descriptors and fingerprints were exploited for feature selection, optimization and development of machine learning based classification and regression models. The compositional differences in the distribution of atoms were apparent between toxins and non-toxins, and hence, the molecular features were used for the classification and regression. On 10-fold cross-validation, the descriptor-based, fingerprint-based and hybrid-based classification models showed similar accuracy (93%) and Matthews's correlation coefficient (0.84). The performances of all the three models were comparable (Matthews's correlation coefficient = 0.84–0.87) on the blind dataset. In addition, the regression-based models using descriptors as input features were also compared and evaluated on the blind dataset. Random forest based regression model for the prediction of solubility performed better (R2 = 0.84) than the multi-linear regression (MLR) and partial least square regression (PLSR) models, whereas, the partial least squares based regression model for the prediction of permeability (caco-2) performed better (R2 = 0.68) in comparison to the random forest and MLR based regression models. The performance of final classification and regression models was evaluated using the two validation datasets including the known toxins and commonly used constituents of health products, which attests to its accuracy. The ToxiM web server would be a highly useful and reliable tool for the prediction of toxicity, solubility, and permeability of small molecules. PMID:29249969

Relations between the structure of storage and the transport of chemical compounds in karstic aquifers

NASA Astrophysics Data System (ADS)

Vaute, L.; Drogue, C.; Garrelly, L.; Ghelfenstein, M.

1997-12-01

Study of the movement of chemical compounds naturally present in the water, or which result from pollution, are examined according to the reservoir structure in karstic aquifers. Structure is represented by a simple geometrical model; slow flow takes place in blocks with a network of low-permeability cracks. The blocks are separated by highly permeable karstic conduits that allow rapid flow, and these form the aquifer drainage system. The karst studied covers 110 km 2. It is fed by an interrupted stream draining a 35 km 2 non-karstic basin, contaminated at the entry to the karst by effluents from a sewage treatment station. The underground water reappears as a resurgence with an annual average flow of approximately 1 m 3 s -1, after an apparent underground course of 8 km in the karst. Several local sources of pollution (effluent from septic tanks) contaminate the underground water during its course. Sixteen measurement operations were performed at 12 water points, between the interrupted stream and the spring. Some sampling points were at drains, and others were in the low-permeability fissured blocks. Comparison at each point of the concentrations of 14 chemical compounds gave the following results: when pollutant discharge occurs in a permeable zone, movement is rapid in the drainage network formed by the karstic conduits, and does not reach the less permeable fissured blocks which are thus protected; however, if discharge is in a low-permeability zone, the flow does not allow rapid movement of the polluted water, and this increases the pollutant concentration at the discharge. This simple pattern can be upset by a reversal of the apparent piezometric gradient between a block and a conduit during floods or pumping; this may reverse flow directions and hence modify the movement of contaminants. The study made it possible to site five boreholes whose positions in the karstic structure were unknown, showing the interest of such an approach for the forecasting of the impact of potential pollution.

The generation and evolution of anisotropic gas-permeability during viscous deformation in conduit-filling ignimbrites

NASA Astrophysics Data System (ADS)

Kolzenburg, Stephan; Russell, Kelly

2015-04-01

Gas-permeability plays a governing role in the pre-explosive pressurization of volcanic edifices. Pressurization may only occur once the total volume flux of gases emitted by an underlying magmatic or hydrothermal source exceeds the flow capacity of the permeable pathways present in the edifice. We have measured the physical properties (strain, porosity, permeability and ultrasonic wave velocities) of breadcrust bombs recovered from the deposits of the 2350 B.P. eruption of Mt Meager, BC, Canada. These rocks represent a conduit-infilling pyroclastic breccia that underwent various degrees of welding and deformation and present a remarkable opportunity to constrain the nature and timescale of mechanical processes operating within explosive volcanic conduits during repose periods between eruptive cycles. Here we present data from permeability measurements along the directions of maximum and minimum shortening which help quantifying the effect of vesicle microstructure on permeability. Permeability is measured by applying a range of confining pressures (between 3.4 and 17.2 MPa) to each sample and imposing a constant head (of 0.2 to 3.5 MPa) across the sample. The permeability is then determined using a modified version of Darcy's law applicable to compressible fluids. These rocks display a profound directionality in the measured physical properties resulting from the deformation-induced fabric. For all samples the permeability across the elongation fabric is highly correlated to the sample porosity whereas along the elongation fabric there is little effect of porosity on permeability. At porosity values of about 20% the permeability seems to reach a minimum at 10-16 m2 and does not change significantly with further reduction of porosity. Further, the effect of confining pressure on the permeability of these samples appears to be more pronounced across the elongation fabric than along the elongation fabric. The deformation fabric has a significant effect on the gas-permeability of the deposit. Porosity, on the other hand, appears to play a secondary role. This, fabric dependent, anisotropic permeability evolution of fragmental deposits during welding directly affects the gas escape from, and transport through the deposit and, therewith, plays a key role in the gas-pressure distribution and evolution within the volcano.

SOD activity of carboxyfullerenes predicts their neuroprotective efficacy: A structure-activity study

PubMed Central

Ali, Sameh Saad; Hardt, Joshua I.; Dugan, Laura L.

2008-01-01

Superoxide radical anion is a biologically important oxidant that has been linked to tissue injury and inflammation in several diseases. Here we carried out a structure-activity study on 6 different carboxyfullerene superoxide dismutase (SOD) mimetics with distinct electronic and biophysical characteristics. Neurotoxicity via NMDA receptors, which involves intracellular superoxide, was used as a model to evaluate structure-activity relationships between reactivity towards superoxide and neuronal rescue by these drugs. A significant correlation between neuroprotection by carboxyfullerenes and their ki towards superoxide radical was observed. Computer-assistant molecular modeling demonstrated that the reactivity towards superoxide is sensitive to changes in dipole moment which are dictated not only by the number of carboxyl groups, but also by their distribution on the fullerene ball. These results indicate that the SOD activity of these cell-permeable compounds predicts neuroprotection, and establishes a structure-activity relationship to aid in future studies on the biology of superoxide across disciplines. PMID:18656425

Hydrogen Permeability of Polymer Matrix Composites at Cryogenic Temperatures

NASA Technical Reports Server (NTRS)

Grenoble, Ray W.; Gates, Thomas S

2005-01-01

This paper presents experimental methods and results of an ongoing study of the correlation between damage state and hydrogen gas permeability of laminated composite materials under mechanical strains and thermal loads. A specimen made from IM-7/977-2 composite material has been mechanically cycled at room temperature to induce microcrack damage. Crack density and tensile modulus were observed as functions of number of cycles. Damage development was found to occur most quickly in the off-axis plies near the outside of the laminate. Permeability measurements were made after 170,000 cycles and 430,000 cycles. Leak rate was found to depend on applied mechanical strain, crack density, and test temperature.

Experimental assessment of the spatial variability of porosity, permeability and sorption isotherms in an ordinary building concrete

NASA Astrophysics Data System (ADS)

Issaadi, N.; Hamami, A. A.; Belarbi, R.; Aït-Mokhtar, A.

2017-10-01

In this paper, spatial variabilities of some transfer and storage properties of a concrete wall were assessed. The studied parameters deal with water porosity, water vapor permeability, intrinsic permeability and water vapor sorption isotherms. For this purpose, a concrete wall was built in the laboratory and specimens were periodically taken and tested. The obtained results allow highlighting a statistical estimation of the mean value, the standard deviation and the spatial correlation length of the studied fields for each parameter. These results were discussed and a statistical analysis was performed in order to assess for each of these parameters the appropriate probability density function.

Surface resistivity as an alternative for rapid chloride permeability test of hardened concrete.

DOT National Transportation Integrated Search

2015-03-01

Kansas experiences harsh winters that require frequent use of de-icing salts, making it critical to the long-term : durability of concrete structures that the permeability is kept under control. Under current KDOT specification, the : Rapid Chloride ...

The complexity of intestinal permeability: Assigning the correct BCS classification through careful data interpretation.

PubMed

Zur, Moran; Hanson, Allison S; Dahan, Arik

2014-09-30

While the solubility parameter is fairly straightforward when assigning BCS classification, the intestinal permeability (Peff) is more complex than generally recognized. In this paper we emphasize this complexity through the analysis of codeine, a commonly used antitussive/analgesic drug. Codeine was previously classified as a low-permeability compound, based on its lower LogP compared to metoprolol, a marker for the low-high permeability class boundary. In contrast, high fraction of dose absorbed (Fabs) was reported for codeine, which challenges the generally recognized Peff-Fabs correlation. The purpose of this study was to clarify this ambiguity through elucidation of codeine's BCS solubility/permeability class membership. Codeine's BCS solubility class was determined, and its intestinal permeability throughout the small intestine was investigated, both in vitro and in vivo in rats. Codeine was found to be unequivocally a high-solubility compound. All in vitro studies indicated that codeine's permeability is higher than metoprolol's. In vivo studies in rats showed similar permeability for both drugs throughout the entire small-intestine. In conclusion, codeine was found to be a BCS Class I compound. No Peff-Fabs discrepancy is involved in its absorption; rather, it reflects the risk of assigning BCS classification based on merely limited physicochemical characteristics. A thorough investigation using multiple experimental methods is prudent before assigning a BCS classification, to avoid misjudgment in various settings, e.g., drug discovery, formulation design, drug development and regulation. Copyright © 2013 Elsevier B.V. All rights reserved.

A study on the correlation between soil radon potential and average indoor radon potential in Canadian cities.

PubMed

Chen, Jing; Ford, Ken L

2017-01-01

Exposure to indoor radon is identified as the main source of natural radiation exposure to the population. Since radon in homes originates mainly from soil gas radon, it is of public interest to study the correlation between radon in soil and radon indoors in different geographic locations. From 2007 to 2010, a total of 1070 sites were surveyed for soil gas radon and soil permeability. Among the sites surveyed, 430 sites were in 14 cities where indoor radon information is available from residential radon and thoron surveys conducted in recent years. It is observed that indoor radon potential (percentage of homes above 200 Bq m -3 ; range from 1.5% to 42%) correlates reasonably well with soil radon potential (SRP: an index proportional to soil gas radon concentration and soil permeability; average SRP ranged from 8 to 26). In five cities where in-situ soil permeability was measured at more than 20 sites, a strong correlation (R 2  = 0.68 for linear regression and R 2  = 0.81 for non-linear regression) was observed between indoor radon potential and soil radon potential. This summary report shows that soil gas radon measurement is a practical and useful predictor of indoor radon potential in a geographic area, and may be useful for making decisions around prioritizing activities to manage population exposure and future land-use planning. Crown Copyright © 2016. Published by Elsevier Ltd. All rights reserved.

Pore Pressure Distribution and Flank Instability in Hydrothermally Altered Stratovolcanoes

NASA Astrophysics Data System (ADS)

Ball, J. L.; Taron, J.; Hurwitz, S.; Reid, M. E.

2015-12-01

Field and geophysical investigations of stratovolcanoes with long-lived hydrothermal systems commonly reveal that initially permeable regions (such as brecciated layers of pyroclastic material) can become both altered and water-bearing. Hydrothermal alteration in these regions, including clay formation, can turn them into low-permeability barriers to fluid flow, which could increase pore fluid pressures resulting in flank slope instability. We examined elevated pore pressure conditions using numerical models of hydrothermal flow in stratovolcanoes, informed by geophysical data about internal structures and deposits. Idealized radially symmetric meshes were developed based on cross-sectional profiles and alteration/permeability structures of Cascade Range stratovolcanoes. We used the OpenGeoSys model to simulate variably saturated conditions in volcanoes heated only by regional heat fluxes, as well as 650°C intrusions at two km depth below the surface. Meteoric recharge was estimated from precipitation rates in the Cascade Range. Preliminary results indicate zones of elevated pore pressures form: 1) where slopes are underlain by continuous low-permeability altered layers, or 2) when the edifice has an altered core with saturated, less permeable limbs. The first scenario might control shallow collapses on the slopes above the altered layers. The second could promote deeper flank collapses that are initially limited to the summit and upper slopes, but could progress to the core of an edifice. In both scenarios, pore pressures can be further elevated by shallow intrusions, or evolve over longer time scales under forcing from regional heat flux. Geometries without confining low-permeability layers do not show these pressure effects. Our initial scenarios use radially symmetric models, but we are also simulating hydrothermal flow under real 3D geometries with asymmetric subsurface structures (Mount Adams). Simulation results will be used to inform 3D slope-stability models.

Modelling of wildlife migrations and its economic impacts

NASA Astrophysics Data System (ADS)

Myšková, Kateřina; Žák, Jaroslav

2013-10-01

Natural wildlife migrations are often disrupted by the construction of line structures, especially freeways. Various overpasses and underpasses (migration objects) are being designed to enable species to pass through line structures. The newly developed original procedure for the quantification of the utility of migration objects (migration potentials) and sections of line structures retrieves the deficiencies of the previous ones. The procedure has been developed under bulk information obtained by monitoring migrations using camera system and spy games. The log-normal distribution functions are used. The procedure for the evaluation of the probability of the permeability of the line structures sectors is also presented. The above mentioned procedures and algorithms can be used while planning, preparing, constructing or verifying the measures to assure the permeability of line structures for selected feral species. Using the procedures can significantly reduce financial costs and improve the permeability. When the migration potentials are correctly determined and the whole sector is taken into account for the migrations, some originally designed objects may be found to be redundant and not building them will bring financial savings.

Acoustic cavitation-based monitoring of the reversibility and permeability of ultrasound-induced blood-brain barrier opening

NASA Astrophysics Data System (ADS)

Sun, Tao; Samiotaki, Gesthimani; Wang, Shutao; Acosta, Camilo; Chen, Cherry C.; Konofagou, Elisa E.

2015-12-01

Cavitation events seeded by microbubbles have been previously reported to be associated with MR- or fluorescent-contrast enhancement after focused ultrasound (FUS)-induced blood-brain barrier (BBB) opening. However, it is still unknown whether bubble activity can be correlated with the reversibility (the duration of opening and the likelihood of safe reinstatement) and the permeability of opened BBB, which is critical for the clinical translation of using passive cavitation detection to monitor, predict and control the opening. In this study, the dependence of acoustic cavitation on the BBB opening duration, permeability coefficient and histological damage occurrence were thus investigated. Transcranial pulsed FUS at 1.5 MHz in the presence of systemically circulating microbubbles was applied in the mouse hippocampi (n  =  60). The stable and inertial cavitation activities were monitored during sonication. Contrast-enhanced MRI was performed immediately after sonication and every 24 h up to 6 d thereafter, to assess BBB opening, brain tissue permeability and potential edema. Histological evaluations were used to assess the occurrence of neurovascular damages. It was found that stable cavitation was well correlated with: (1) the duration of the BBB opening (r2  =  0.77) (2) the permeability of the opened BBB (r2  =  0.82) (3) the likelihood of safe opening (P  <  0.05, safe opening compared to cases of damage; P  <  0.0001, no opening compared to safe opening). The inertial cavitation dose was correlated with the resulting BBB permeability (r2  =  0.72). Stable cavitation was found to be more reliable than inertial cavitation at assessing the BBB opening within the pressure range used in this study. This study demonstrates that the stable cavitation response during BBB opening holds promise for predicting and controlling the restoration and pharmacokinetics of FUS-opened BBB. The stable cavitation response therefore showed great promise in predicting the BBB opening duration, enabling thus control of opening according to the drug circulation time. In addition, avoiding adverse effects in the brain and assessing the pharmacokinetics of the compounds delivered can also be achieved by monitoring and controlling the stable cavitation emissions.

Acoustic cavitation-based monitoring of the reversibility and permeability of ultrasound-induced blood-brain barrier opening.

PubMed

Sun, Tao; Samiotaki, Gesthimani; Wang, Shutao; Acosta, Camilo; Chen, Cherry C; Konofagou, Elisa E

2015-12-07

Cavitation events seeded by microbubbles have been previously reported to be associated with MR- or fluorescent-contrast enhancement after focused ultrasound (FUS)-induced blood-brain barrier (BBB) opening. However, it is still unknown whether bubble activity can be correlated with the reversibility (the duration of opening and the likelihood of safe reinstatement) and the permeability of opened BBB, which is critical for the clinical translation of using passive cavitation detection to monitor, predict and control the opening. In this study, the dependence of acoustic cavitation on the BBB opening duration, permeability coefficient and histological damage occurrence were thus investigated. Transcranial pulsed FUS at 1.5 MHz in the presence of systemically circulating microbubbles was applied in the mouse hippocampi (n  =  60). The stable and inertial cavitation activities were monitored during sonication. Contrast-enhanced MRI was performed immediately after sonication and every 24 h up to 6 d thereafter, to assess BBB opening, brain tissue permeability and potential edema. Histological evaluations were used to assess the occurrence of neurovascular damages. It was found that stable cavitation was well correlated with: (1) the duration of the BBB opening (r(2)  =  0.77); (2) the permeability of the opened BBB (r(2)  =  0.82); (3) the likelihood of safe opening (P  <  0.05, safe opening compared to cases of damage; P  <  0.0001, no opening compared to safe opening). The inertial cavitation dose was correlated with the resulting BBB permeability (r(2)  =  0.72). Stable cavitation was found to be more reliable than inertial cavitation at assessing the BBB opening within the pressure range used in this study. This study demonstrates that the stable cavitation response during BBB opening holds promise for predicting and controlling the restoration and pharmacokinetics of FUS-opened BBB. The stable cavitation response therefore showed great promise in predicting the BBB opening duration, enabling thus control of opening according to the drug circulation time. In addition, avoiding adverse effects in the brain and assessing the pharmacokinetics of the compounds delivered can also be achieved by monitoring and controlling the stable cavitation emissions.

Permeability, transport, and metabolism of solutes in Caco-2 cell monolayers: a theoretical study.

PubMed

Sun, Huadong; Pang, K Sandy

2008-01-01

We explored the properties of a catenary model that includes the basolateral (B), apical (A), and cellular compartments via simulations under linear and nonlinear conditions to understand the asymmetric observations arising from transporters, enzymes, and permeability in Caco-2 cells. The efflux ratio (EfR; P(app,B-->A)/P(app,A-->B)), obtained from the effective permeability from the A-->B and B-->A direction under linear conditions, was unity for passively permeable drugs whose transport does not involve transporters; the value was unaffected by cellular binding or metabolism, but increased with apical efflux. Metabolism was asymmetric, showing lesser metabolite accrual for the B-->A than A-->B direction because of inherent differences in the volumes for A and B. Moreover, the net flux (total - passive permeation) due to saturable apical efflux, absorption, or metabolism showed nonconformity to simple Michaelis-Menten kinetics against C(D,0), the loading donor concentration. EfR values differed with saturable apical efflux and metabolism (>1), as well as apical absorption (EfRs <1), but approached unity with high passive diffusive clearance (CL(d)) and increasing C(D,0) at a higher degree of saturation of the process. The J(max) (apparent V(max) estimated for the carrier system) and K(m)(') [or the K(m)('') based on a modified equation with the Hill coefficient (beta)] estimates from the Eadie-Hofstee plot revealed spurious correlations with the assigned V(max) and K(m). The sampling time, CL(d), and parameter space of K(m) and V(max) strongly influenced both the correlation and accuracy of estimates. Improved correlation was found for compounds with high CL(d). These observations showed that the catenary model is appropriate in the description of transport and metabolic data in Caco-2 cells.

Temporal and spatial correlation of platelet-activating factor-induced increases in endothelial [Ca²⁺]i, nitric oxide, and gap formation in intact venules.

PubMed

Zhou, Xueping; He, Pingnian

2011-11-01

We have previously demonstrated that platelet-activating factor (PAF)-induced increases in microvessel permeability were associated with endothelial gap formation and that the magnitude of peak endothelial intracellular Ca(2+) concentration ([Ca(2+)](i)) and nitric oxide (NO) production at the single vessel level determines the degree of the permeability increase. This study aimed to examine whether the magnitudes of PAF-induced peak endothelial [Ca(2+)](i), NO production, and gap formation are correlated at the individual endothelial cell level in intact rat mesenteric venules. Endothelial gaps were quantified by the accumulation of fluorescent microspheres at endothelial clefts using confocal imaging. Endothelial [Ca(2+)](i) was measured on fura-2- or fluo-4-loaded vessels, and 4,5-diaminofluorescein (DAF-2) was used for NO measurements. The results showed that increases in endothelial [Ca(2+)](i), NO production, and gap formation occurred in all endothelial cells when vessels were exposed to PAF but manifested a spatial heterogeneity in magnitudes among cells in each vessel. PAF-induced peak endothelial [Ca(2+)](i) preceded the peak NO production by 0.6 min at the cellular level, and the magnitudes of NO production and gap formation linearly correlated with that of the peak endothelial [Ca(2+)](i) in each cell, suggesting that the initial levels of endothelial [Ca(2+)](i) determine downstream NO production and gap formation. These results provide direct evidence from intact venules that inflammatory mediator-induced increases in microvessel permeability are associated with the generalized formation of endothelial gaps around all endothelial cells. The spatial differences in the molecular signaling that were initiated by the heterogeneous endothelial Ca(2+) response contribute to the heterogeneity in permeability increases along the microvessel wall during inflammation.

Innovative computational tools for reducing exploration risk through integration of water-rock interactions and magnetotelluric surveys

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moore, Joseph

2017-04-20

Mapping permeability distributions in geothermal reservoirs is essential for reducing the cost of geothermal development. To avoid the cost and sampling bias of measuring permeability directly through drilling, we require remote methods of imaging permeability such as geophysics. Electrical resistivity (or its inverse, conductivity) is one of the most sensitive geophysical properties known to reflect long range fluid interconnection and thus the likelihood of permeability. Perhaps the most widely applied geophysical methods for imaging subsurface resistivity is magnetotellurics (MT) due to its relatively great penetration depths. A primary goal of this project is to confirm through ground truthing at existingmore » geothermal systems that MT resistivity structure interpreted integratively is capable of revealing permeable fluid pathways into geothermal systems.« less

Liquid-permeable electrode

DOEpatents

Folser, George R.

1980-01-01

Electrodes for use in an electrolytic cell, which are liquid-permeable and have low electrical resistance and high internal surface area are provided of a rigid, porous, carbonaceous matrix having activated carbon uniformly embedded throughout. The activated carbon may be catalyzed with platinum for improved electron transfer between electrode and electrolyte. Activated carbon is mixed with a powdered thermosetting phenolic resin and compacted to the desired shape in a heated mold to melt the resin and form the green electrode. The compact is then heated to a pyrolyzing temperature to carbonize and volatilize the resin, forming a rigid, porous structure. The permeable structure and high internal surface area are useful in electrolytic cells where it is necessary to continuously remove the products of the electrochemical reaction.

Complementary analyses of hollow cylindrical unioriented permanent magnet (HCM) with high permeability external layer

NASA Astrophysics Data System (ADS)

Lobo, Carlos M. S.; Tosin, Giancarlo; Baader, Johann E.; Colnago, Luiz A.

2017-10-01

In this article, several studies based on analytical expressions and computational simulations on Hollow Cylindrical Magnets with an external soft ferromagnetic material (HCM magnets) are presented. Electromagnetic configurations, as well as permanent-magnet-based structures, are studied in terms of magnetic field strength and homogeneity. Permanent-magnet-based structures are further analyzed in terms of the anisotropy of the magnetic permeability. It was found that the HCM magnets produce a highly homogeneous magnetic field as long as the magnetic material is isotropic. The dependency of the magnetic field strength and homogeneity in terms of the anisotropy of the magnetic permeability is also explored here. These magnets can potentially be used in medium-resolution NMR spectrometers and high-field NMR spectrometers.

A novel multi-coaxial hollow fiber bioreactor for adherent cell types. Part 1: hydrodynamic studies.

PubMed

Wolfe, Stephen P; Hsu, Edward; Reid, Lola M; Macdonald, Jeffrey M

2002-01-05

A novel multi-coaxial bioreactor for three-dimensional cultures of adherent cell types, such as liver, is described. It is composed of four tubes of increasing diameter placed one inside the other, creating four spatially isolated compartments. Liver acinar structure and physiological parameters are mimicked by sandwiching cells in the space between the two innermost semi-permeable tubes, or hollows fibers, and creating a radial flow of media from an outer compartment (ECC), through the cell mass compartment, and to an inner compartment (ICC). The outermost compartment is created by gas-permeable tubing, and the housing is used to oxygenate the perfusion media to periportal levels in the ECC. Experiments were performed using distilled water to correlate the radial flow rate (Q(r)) with (1) the pressure drop (DeltaP) between the media compartments that sandwich the cell compartment and (2) the pressure in the cell compartment (P(c)). These results were compared with the theoretical profile calculated based on the hydraulic permeability of the two innermost fibers. Phase-contrast velocity-encoded magnetic resonance imaging was used to visualize directly the axial velocities inside the bioreactor and confirm the assumptions of laminar flow and zero axial velocity at the boundaries of each compartment in the bioreactor. Axial flow rates were calculated from the magnetic resonance imaging results and were similar to the measured axial flow rates for the previously described experiments. Copyright 2002 John Wiley & Sons, Inc.

Investigation of properties of high-performance fiber-reinforced concrete : very early strength, toughness, permeability, and fiber distribution : final report.

DOT National Transportation Integrated Search

2017-01-01

Concrete cracking, high permeability, and leaking joints allow for intrusion of harmful solutions, resulting in concrete deterioration and corrosion of reinforcement in structures. The development of durable, high-performance concretes with limited c...

Surface resistivity as an alternative for rapid chloride permeability test of hardened concrete : [technical summary].

DOT National Transportation Integrated Search

2015-03-01

Kansas experiences harsh winters that require frequent use of de-icing salts, making it : critical to the long-term durability of concrete structures that the permeability is kept : under control. Under current KDOT specification, the Rapid Chloride ...

Selective molecular transport through the protein shell of a bacterial microcompartment organelle

DOE PAGES

Chowdhury, Chiranjit; Chun, Sunny; Pang, Allan; ...

2015-02-23

Bacterial microcompartments are widespread prokaryotic organelles that have important and diverse roles ranging from carbon fixation to enteric pathogenesis. Current models for microcompartment function propose that their outer protein shell is selectively permeable to small molecules, but whether a protein shell can mediate selective permeability and how this occurs are unresolved questions. In this paper, biochemical and physiological studies of structure-guided mutants are used to show that the hexameric PduA shell protein of the 1,2-propanediol utilization (Pdu) microcompartment forms a selectively permeable pore tailored for the influx of 1,2-propanediol (the substrate of the Pdu microcompartment) while restricting the efflux ofmore » propionaldehyde, a toxic intermediate of 1,2-propanediol catabolism. Crystal structures of various PduA mutants provide a foundation for interpreting the observed biochemical and phenotypic data in terms of molecular diffusion across the shell. Finally and overall, these studies provide a basis for understanding a class of selectively permeable channels formed by nonmembrane proteins.« less

A relationship between porosity and permeability of carbonate rock reservoirs

NASA Astrophysics Data System (ADS)

Lee, J.; Park, Y.; Jo, Y.; Jeong, J.; Eom, S.

2009-12-01

Most of oil reservoirs in the world occur in carbonate rocks. Thus, characterization of the carbonate reservoirs, including understanding the correlation between porosity and permeability is essentially required to enhance oil recovery. Compared with the other sedimentary rocks such as sandstone and shale, the carbonate rocks would exhibit a wide variety of vertical and horizontal heterogeneities. In general, pores of the carbonate rocks can be affected by mineral dissolution, replacement by other minerals and re-crystallization, which are the post-depositional processes. Permeability has been estimated at a wide scale by thin section image analysis, rock core experiments, geophysical well logging data and large scale aquifer tests. For the same porosity, the permeability might show a wide variation. In this study, a large number of the porosity and the permeability data pairs for world wide carbonate rocks (reservoirs) were collected from many literatures. The porosity and permeability data were grouped according to test scale, the reservoir location and the rock types. As is already known, the relation showed a rather scattered distribution also in this study, not monotonous, which indicates that higher porosity does not mean higher permeability of the rock formation. This study provides the analysis results and implications for oil production of the carbonate reservoirs. This research was funded by Energy Efficiency and Resources Program of KETEP (Korea Institute of Energy Technology Evaluation and Planning), Grant No. 2009T100200058.

Evaluation of the use of partition coefficients and molecular surface properties as predictors of drug absorption: a provisional biopharmaceutical classification of the list of national essential medicines of Pakistan

PubMed Central

Shawahna, R.; Rahman, NU.

2011-01-01

Background and the purpose of the study Partition coefficients (log D and log P) and molecular surface area (PSA) are potential predictors of the intestinal permeability of drugs. The aim of this investigation was to evaluate and compare these intestinal permeability indicators. Methods Aqueous solubility data were obtained from literature or calculated using ACD/Labs and ALOGPS. Permeability data were predicted based on log P, log D at pH 6.0 (log D6.0), and PSA. Results Metoprolol's log P, log D6.0, and a PSA of <65 Å correctly predicted 55.9%, 50.8% and 54.2% of permeability classes, respectively. Labetalol's log P, log D6.0 and PSA correctly predicted 54.2%, 64.4% and 61% of permeability classes, respectively. Log D6.0 correlated well (81%) with Caco-2 permeability (Papp). Of the list of national essential medicines, 135 orally administered drugs were classified into biopharmaceutical classification system (BCS). Of these, 57 (42.2%), 28 (20.7%), 44 (32.6%), and 6 (4.4%) were class I, II, III and IV respectively. Conclusion Log D6.0 showed better prediction capability than log P. Metoprolol as permeability internal standard was more conservative than labetalol. PMID:22615645

Topical Apigenin Improves Epidermal Permeability Barrier Homeostasis in Normal Murine Skin by Divergent Mechanisms

PubMed Central

Hou, Maihua; Sun, Richard; Hupe, Melanie; Kim, Peggy L.; Park, Kyungho; Crumrine, Debra; Lin, Tzu-kai; Santiago, Juan Luis; Mauro, Theodora M.; Elias, Peter M.; Man, Mao-Qiang

2013-01-01

The beneficial effects of certain herbal medicines on cutaneous function have been appreciated for centuries. Among these agents, Chrysanthemum extract, apigenin, has been used for skin care, particularly in China, for millennia. However, the underlying mechanisms by which apigenin benefits the skin are not known. In the present study, we first determined whether topical apigenin positively influences permeability barrier homeostasis, and then the basis thereof. Hairless mice were treated topically with either 0.1% apigenin or vehicle alone twice-daily for 9 days. At the end of treatments, permeability barrier function was assessed with either an electrolytic water analyzer or a Tewameter. Our results show that topical apigenin significantly enhanced permeability barrier homeostasis after tape stripping, though basal permeability barrier function remained unchanged. Improved barrier function correlated with enhanced filaggrin expression and lamellar body production, which was paralleled by elevated mRNA levels for the epidermal ABCA12. The mRNA levels for key lipid synthetic enzymes also were up-regulated by apigenin. Finally, both CAMP and mBD3 immunostaining were increased by apigenin. We conclude that topical apigenin improves epidermal permeability barrier function by stimulating epidermal differentiation, lipid synthesis and secretion, as well as cutaneous antimicrobial peptide production. Apigenin could be useful for the prevention and treatment of skin disorders characterized by permeability barrier dysfunction, associated with reduced filaggrin levels, and impaired antimicrobial defenses, such as atopic dermatitis. PMID:23489424

Heavy Cigarette Smokers in a Chinese Population Display a Compromised Permeability Barrier

PubMed Central

Xin, Shujun; Ye, Li; Lv, Chengzhi; Elias, Peter M.

2016-01-01

Cigarette smoking is associated with various cutaneous disorders with defective permeability. Yet, whether cigarette smoking influences epidermal permeability barrier function is largely unknown. Here, we measured skin biophysical properties, including permeability barrier homeostasis, stratum corneum (SC) integrity, SC hydration, skin surface pH, and skin melanin/erythema index, in cigarette smokers. A total of 99 male volunteers were enrolled in this study. Smokers were categorized as light-to-moderate (<20 cigarettes/day) or heavy smokers (≥20 cigarettes/day). An MPA5 was used to measure SC hydration and skin melanin/erythema index on the dorsal hand, forehead, and cheek. Basal transepidermal water loss (TEWL) and barrier recovery rates were assessed on the forearm. A Skin-pH-Meter pH900 was used to measure skin surface pH. Our results showed that heavy cigarette smokers exhibited delayed barrier recovery after acute abrogation (1.02% ± 13.06 versus 16.48% ± 6.07), and barrier recovery rates correlated negatively with the number of daily cigarettes consumption (p = 0.0087). Changes in biophysical parameters in cigarette smokers varied with body sites. In conclusion, heavy cigarette smokers display compromised permeability barrier homeostasis, which could contribute, in part, to the increased prevalence of certain cutaneous disorders characterized by defective permeability. Thus, improving epidermal permeability barrier should be considered for heavy cigarette smokers. PMID:27437403

The Effect of DA-6034 on Intestinal Permeability in an Indomethacin-Induced Small Intestinal Injury Model.

PubMed

Kwak, Dong Shin; Lee, Oh Young; Lee, Kang Nyeong; Jun, Dae Won; Lee, Hang Lak; Yoon, Byung Chul; Choi, Ho Soon

2016-05-23

DA-6034 has anti-inflammatory activities and exhibits cytoprotective effects in acute gastric injury models. However, explanations for the protective effects of DA-6034 on intestinal permeability are limited. This study sought to investigate the effect of DA-6034 on intestinal permeability in an indomethacin-induced small intestinal injury model and its protective effect against small intestinal injury. Rats in the treatment group received DA-6034 from days 0 to 2 and indomethacin from days 1 to 2. Rats in the control group received indomethacin from days 1 to 2. On the fourth day, the small intestines were examined to compare the severity of inflammation. Intestinal permeability was evaluated by using fluorescein isothiocyanate-labeled dextran. Western blotting was performed to confirm the association between DA-6034 and the extracellular signal-regulated kinase (ERK) pathway. The inflammation scores in the treatment group were lower than those in the control group, but the difference was statistically insignificant. Hemorrhagic lesions in the treatment group were broader than those in the control group, but the difference was statistically insignificant. Intestinal permeability was lower in the treatment group than in the control group. DA-6034 enhanced extracellular signal-regulated kinase expression, and intestinal permeability was negatively correlated with ERK expression. DA-6034 may decrease intestinal permeability in an indomethacin-induced intestinal injury model via the ERK pathway.

Development and characterization of a new oral dapsone nanoemulsion system: permeability and in silico bioavailability studies

PubMed Central

Monteiro, Lidiane M; Lione, Viviane F; do Carmo, Flavia A; do Amaral, Lilian H; da Silva, Julianna H; Nasciutti, Luiz E; Rodrigues, Carlos R; Castro, Helena C; de Sousa, Valeria P; Cabral, Lucio M

2012-01-01

Background Dapsone is described as being active against Mycobacterium leprae, hence its role in the treatment of leprosy and related pathologies. Despite its therapeutic potential, the low solubility of dapsone in water results in low bioavailability and high microbial resistance. Nanoemulsions are pharmaceutical delivery systems derived from micellar solutions with a good capacity for improving absorption. The aim of this work was to develop and compare the permeability of a series of dapsone nanoemulsions in Caco-2 cell culture against that of effective permeability in the human body simulated using Gastroplus™ software. Methods and results The release profiles of the dapsone nanoemulsions using different combinations of surfactants and cosolvent showed a higher dissolution rate in simulated gastric and enteric fluid than did the dispersed dapsone powder. The drug release kinetics were consistent with a Higuchi model. Conclusion This comparison of dapsone permeability in Caco-2 cells with effective permeability in the human body simulated by Gastroplus showed a good correlation and indicates potential improvement in the biodisponibility of dapsone using this new system. PMID:23055729

Development and characterization of a new oral dapsone nanoemulsion system: permeability and in silico bioavailability studies.

PubMed

Monteiro, Lidiane M; Lione, Viviane F; do Carmo, Flavia A; do Amaral, Lilian H; da Silva, Julianna H; Nasciutti, Luiz E; Rodrigues, Carlos R; Castro, Helena C; de Sousa, Valeria P; Cabral, Lucio M

2012-01-01

Dapsone is described as being active against Mycobacterium leprae, hence its role in the treatment of leprosy and related pathologies. Despite its therapeutic potential, the low solubility of dapsone in water results in low bioavailability and high microbial resistance. Nanoemulsions are pharmaceutical delivery systems derived from micellar solutions with a good capacity for improving absorption. The aim of this work was to develop and compare the permeability of a series of dapsone nanoemulsions in Caco-2 cell culture against that of effective permeability in the human body simulated using Gastroplus™ software. The release profiles of the dapsone nanoemulsions using different combinations of surfactants and cosolvent showed a higher dissolution rate in simulated gastric and enteric fluid than did the dispersed dapsone powder. The drug release kinetics were consistent with a Higuchi model. This comparison of dapsone permeability in Caco-2 cells with effective permeability in the human body simulated by Gastroplus showed a good correlation and indicates potential improvement in the biodisponibility of dapsone using this new system.

Light propagation in tissues with controlled optical properties

NASA Astrophysics Data System (ADS)

Tuchin, Valery V.; Maksimova, Irina L.; Zimnyakov, Dmitry A.; Kon, Irina L.; Mavlyutov, Albert H.; Mishin, Alexey A.

1997-10-01

Theoretical and computer modeling approaches, such as Mie theory, radiative transfer theory, diffusion wave correlation spectroscopy, and Monte Carlo simulation were used to analyze tissue optics during a process of optical clearing due to refractive index matching. Continuous wave transmittance and forward scattering measurement as well as intensity correlation experiments were used to monitor tissue structural and optical properties. As a control, tissue samples of the human sclera were taken. Osmotically active solutions, such as Trazograph, glucose, and polyethylene glycol, were used as chemicals. A characteristic time response of human scleral optical clearing the range 3 to 10 min was determined. The diffusion coefficients describing the permeability of the scleral samples to Trazograph were experimentally estimated; the average value was DT approximately equals (0.9 +/- 0.5) X 10-5 cm2/s. The results are general and can be used to describe many other fibrous tissues.

Heterogeneous porous media: Fronts and noise

NASA Astrophysics Data System (ADS)

Chaouchel, M.; Rakotomalala, N.; Salin, D.; Xu, B.; Yortsos, Y. C.

Capillary effects can be important in immiscible flows in heterogeneous media, particularly at low capillary numbers (Ca). We present experiments and simulations of slow drainage in 3-D porous media, either homogeneous and in the presence of buoyancy or heterogeneous and in its absence. An acoustic technique allows for an accurate study of the 3-D fronts and the cross-over region. Our results suggest that both cases can be described by invasion percolation in a gradient. Both front tails scale with the corresponding Bond numbers as σft≈B-47 in agreement with the theory. An analogous scaling for viscous effects is also given. The noise of these fronts are found correlated in the form of a fractional Brownian motion (fBm) of a Hurst exponent H≈.5. At higher Ca, experiments performed in 3-D porous media with sharp changes in permeability, exhibit a saturation profile response closely linked to the permeability variations. This viscous response to heterogeneity provides an opportunity to investigate and determine correlated (even at all scales, i.e. fBm), permeability fields.

Markers of Vascular Perturbation Correlate with Airway Structural Change in Asthma

PubMed Central

Kruger, Stanley J.; Schiebler, Mark L.; Evans, Michael D.; Sorkness, Ronald L.; Denlinger, Loren C.; Busse, William W.; Jarjour, Nizar N.; Montgomery, Robert R.; Mosher, Deane F.; Fain, Sean B.

2013-01-01

Rationale: Air trapping and ventilation defects on imaging are characteristics of asthma. Airway wall thickening occurs in asthma and is associated with increased bronchial vascularity and vascular permeability. Vascular endothelial cell products have not been explored as a surrogate to mark structural airway changes in asthma. Objectives: Determine whether reporters of vascular endothelial cell perturbation correlate with airway imaging metrics in patients with asthma of varying severity. Methods: Plasma from Severe Asthma Research Program subjects was analyzed by ELISAs for soluble von Willebrand factor mature protein (VWF:Ag) and propeptide (VWFpp), P-selectin, and platelet factor 4. Additional subjects were analyzed over 48 hours after whole-lung antigen challenge. We calculated ventilation defect volume by hyperpolarized helium-3 magnetic resonance imaging and areas of low signal density by multidetector computed tomography (less than −856 Hounsfield units [HU] at functional residual capacity and −950 HU at total lung capacity [TLC]). Measurements and Main Results: VWFpp and VWFpp/Ag ratio correlated with and predicted greater percentage defect volume on hyperpolarized helium-3 magnetic resonance imaging. P-selectin correlated with and predicted greater area of low density on chest multidetector computed tomography less than −950 HU at TLC. Platelet factor 4 did not correlate. Following whole-lung antigen challenge, variation in VWFpp, VWFpp/Ag, and P-selectin among time-points was less than that among subjects, indicating stability and repeatability of the measurements. Conclusions: Plasma VWFpp and P-selectin may be useful as surrogates of functional and structural defects that are evident on imaging. The results raise important questions about why VWFpp and P-selectin are associated specifically with different imaging abnormalities. PMID:23855693

Acute high-intensity interval running increases markers of gastrointestinal damage and permeability but not gastrointestinal symptoms.

PubMed

Pugh, Jamie N; Impey, Samuel G; Doran, Dominic A; Fleming, Simon C; Morton, James P; Close, Graeme L

2017-09-01

The purpose of this study was to investigate the effects of high-intensity interval running on markers of gastrointestinal (GI) damage and permeability alongside subjective symptoms of GI discomfort. Eleven male runners completed an acute bout of high-intensity interval training (HIIT) (eighteen 400-m runs at 120% maximal oxygen uptake) where markers of GI permeability, intestinal damage, and GI discomfort symptoms were assessed and compared with resting conditions. Compared with rest, HIIT significantly increased serum lactulose/rhamnose ratio (0.051 ± 0.016 vs. 0.031 ± 0.021, p = 0.0047; 95% confidence interval (CI) = 0.006 to 0.036) and sucrose concentrations (0.388 ± 0.217 vs. 0.137 ± 0.148 mg·L -1 ; p < 0.001; 95% CI = 0.152 to 0.350). In contrast, urinary lactulose/rhamnose (0.032 ± 0.005 vs. 0.030 ± 0.005; p = 0.3; 95% CI = -0.012 to 0.009) or sucrose concentrations (0.169% ± 0.168% vs. 0.123% ± 0.120%; p = 0.54; 95% CI = -0.199 to 0.108) did not differ between HIIT and resting conditions. Plasma intestinal-fatty acid binding protein (I-FABP) was significantly increased (p < 0.001) during and in the recovery period from HIIT whereas no changes were observed during rest. Mild symptoms of GI discomfort were reported immediately and at 24 h post-HIIT, although these symptoms did not correlate to GI permeability or I-FABP. In conclusion, acute HIIT increased GI permeability and intestinal I-FABP release, although these do not correlate with symptoms of GI discomfort. Furthermore, by using serum sampling, we provide data showing that it is possible to detect changes in intestinal permeability that is not observed using urinary sampling over a shorter time-period.

Sharp Permeability Transitions due to Shallow Diagenesis of Subduction Zone Sediments

NASA Astrophysics Data System (ADS)

James, S.; Screaton, E.

2013-12-01

The permeability of hemipelagic sediments is an important factor in fluid flow in subduction zones and can be affected by porosity changes and cementation-dissolution processes acting during diagenesis. Anomalously high porosities have been observed in cores from the Shikoku Basin sediments approaching the Nankai Trough subduction zone. These high porosities have been attributed to the presence of minor amounts of amorphous silica cement that strengthen the sediment and inhibit consolidation. The porosity rapidly drops from 66-68% to 54-56% at a diagenetic boundary where the amorphous silica cement dissolves. Although the anomalous porosity profiles at Nankai have received attention, the magnitude of the corresponding permeability change has not been addressed. In this study, permeability profiles were constructed using permeability-porosity relationships from previous studies, to estimate the magnitude and rate of permeability changes with depth. The predicted permeability profiles for the Nankai Trough sediment cores indicate that permeability drops by almost one order of magnitude across the diagenetic boundary. This abrupt drop in permeability has the potential to facilitate significant changes in pore fluid pressures and thus to influence the deformation of the sediment onto the accretionary prism. At the Costa Rica subduction zone, results vary with location. Site U1414 offshore the Osa Peninsula shows porosities stable at 69% above 145 mbsf and then decrease to 54% over a 40 m interval. A porosity drop of that magnitude is predicted to correlate to an order of magnitude permeability decrease. In contrast, porosity profiles from Site 1039 offshore the Nicoya Peninsula and Site U1381 offshore the Osa Peninsula show anomalously high porosities but no sharp drop. It is likely that sediments do not cross the diagenetic boundary due to the extremely low (<10°C/km) thermal gradient at Site 1039 and the thin (<100 m) sediment cover at Site U1381. At these locations, the porosity loss and permeability reduction may occur after the sediment is subducted and contribute to high pore pressures at the plate boundary.

In vitro porcine blood-brain barrier model for permeability studies: pCEL-X software pKa(FLUX) method for aqueous boundary layer correction and detailed data analysis.

PubMed

Yusof, Siti R; Avdeef, Alex; Abbott, N Joan

2014-12-18

In vitro blood-brain barrier (BBB) models from primary brain endothelial cells can closely resemble the in vivo BBB, offering valuable models to assay BBB functions and to screen potential central nervous system drugs. We have recently developed an in vitro BBB model using primary porcine brain endothelial cells. The model shows expression of tight junction proteins and high transendothelial electrical resistance, evidence for a restrictive paracellular pathway. Validation studies using small drug-like compounds demonstrated functional uptake and efflux transporters, showing the suitability of the model to assay drug permeability. However, one limitation of in vitro model permeability measurement is the presence of the aqueous boundary layer (ABL) resulting from inefficient stirring during the permeability assay. The ABL can be a rate-limiting step in permeation, particularly for lipophilic compounds, causing underestimation of the permeability. If the ABL effect is ignored, the permeability measured in vitro will not reflect the permeability in vivo. To address the issue, we explored the combination of in vitro permeability measurement using our porcine model with the pKa(FLUX) method in pCEL-X software to correct for the ABL effect and allow a detailed analysis of in vitro (transendothelial) permeability data, Papp. Published Papp using porcine models generated by our group and other groups are also analyzed. From the Papp, intrinsic transcellular permeability (P0) is derived by simultaneous refinement using a weighted nonlinear regression, taking into account permeability through the ABL, paracellular permeability and filter restrictions on permeation. The in vitro P0 derived for 22 compounds (35 measurements) showed good correlation with P0 derived from in situ brain perfusion data (r(2)=0.61). The analysis also gave evidence for carrier-mediated uptake of naloxone, propranolol and vinblastine. The combination of the in vitro porcine model and the software analysis provides a useful tool to better predict BBB permeability in vivo and gain better mechanistic information about BBB permeation. Copyright © 2014 The Authors. Published by Elsevier B.V. All rights reserved.

Utilization of in vitro Caco-2 permeability and liver microsomal half-life screens in discovering BMS-488043, a novel HIV-1 attachment inhibitor with improved pharmacokinetic properties.

PubMed

Yang, Zheng; Zadjura, Lisa M; Marino, Anthony M; D'Arienzo, Celia J; Malinowski, Jacek; Gesenberg, Christoph; Lin, Pin-Fang; Colonno, Richard J; Wang, Tao; Kadow, John F; Meanwell, Nicholas A; Hansel, Steven B

2010-04-01

Optimizing pharmacokinetic properties to improve oral exposure is a common theme in modern drug discovery. In the present work, in vitro Caco-2 permeability and microsomal half-life screens were utilized in an effort to guide the structure-activity relationship in order to improve the pharmacokinetic properties of novel HIV-1 attachment inhibitors. The relevance of the in vitro screens to in vivo pharmacokinetic properties was first demonstrated with a number of program compounds at the early stage of lead optimization. The Caco-2 permeability, tested at 200 microM, was quantitatively predictive of in vivo oral absorption, with complete absorption occurring at a Caco-2 permeability of 100 nm/s or higher. The liver microsomal half-life screen, conducted at 1 microM substrate concentration, can readily differentiate low-, intermediate-, and high-clearance compounds in rats, with a nearly 1:1 correlation in 12 out of 13 program compounds tested. Among the >100 compounds evaluated, BMS-488043 emerged as a lead, exhibiting a Caco-2 permeability of 178 nm/s and a microsomal half-life predictive of a low clearance (4 mL/min/kg) in humans. These in vitro characteristics translated well to the in vivo setting. The oral bioavailability of BMS-488043 in rats, dogs, and monkeys was 90%, 57%, and 60%, respectively. The clearance was low in all three species tested, with a terminal half-life ranging from 2.4 to 4.7 h. Furthermore, the oral exposure of BMS-488043 was significantly improved (6- to 12-fold in rats and monkeys) compared to the prototype compound BMS-378806 that had a suboptimal Caco-2 permeability (51 nm/s) and microsomal half-life. More importantly, the improvements in preclinical pharmacokinetics translated well to humans, leading to a >15-fold increase in the human oral exposure of BMS-488043 than BMS-378806 and enabling a clinical proof-of-concept for this novel class of anti-HIV agents. The current studies demonstrated the valuable role of in vitro ADME screens in improving oral pharmacokinetics at the lead optimization stage. 2009 Wiley-Liss, Inc. and the American Pharmacists Association

Evaluation of in silico pharmacokinetic properties and in vitro cytotoxic activity of selected newly synthesized N-succinimide derivatives.

PubMed

Milosevic, Natasa P; Kojic, Vesna; Curcic, Jelena; Jakimov, Dimitar; Milic, Natasa; Banjac, Nebojsa; Uscumlic, Gordana; Kaliszan, Roman

2017-04-15

Design of a new drug entity is usually preceded by analysis of quantitative structure activity (properties) relationships, QSA(P)R. Six newly synthesized succinimide derivatives have been determined for (i) in silico physico-chemical descriptors, pharmacokinetic and toxicity predictors, (ii) in vitro biological activity on four different carcinoma cell lines and on normal fetal lung cells and (iii) lipophilicity on liquid chromatography. All compounds observed were predicted for good permeability and solubility, good oral absorption rate and moderate volume of distribution as well as for modest blood brain permeation, followed by acceptable observed toxicity. In silico determined lipophilicity, permeability through jejunum and aqueous solubility were correlated with experimentally obtained lipophilic constants (by use of high pressure liquid chromatography) and linear correlations were obtained. Absorption rate and volume of distribution were predicted by chromatographic lipophilicity measurements while permeation through blood bran barrier was predicted dominantly by molecular size defined with molecular weight. Five compounds have demonstrated antiproliferative activity toward cervix carcinoma HeLa cell lines; three were cytotoxic against breast carcinoma MCF-7 cells, while one inhibited proliferation of colon carcinoma HT-29 cell lines. Only one compound was cytotoxic toward normal cell lines, while other compounds were proven as safe. Antiproliferative potential against HeLa cells was described as exponential function of lipophilicity. Based on obtained results, lead compounds were selected. Copyright © 2017 Elsevier B.V. All rights reserved.

The permeability of fractured rocks in pressurised volcanic and geothermal systems.

PubMed

Lamur, A; Kendrick, J E; Eggertsson, G H; Wall, R J; Ashworth, J D; Lavallée, Y

2017-07-21

The connectivity of rocks' porous structure and the presence of fractures influence the transfer of fluids in the Earth's crust. Here, we employed laboratory experiments to measure the influence of macro-fractures and effective pressure on the permeability of volcanic rocks with a wide range of initial porosities (1-41 vol. %) comprised of both vesicles and micro-cracks. We used a hand-held permeameter and hydrostatic cell to measure the permeability of intact rock cores at effective pressures up to 30 MPa; we then induced a macro-fracture to each sample using Brazilian tensile tests and measured the permeability of these macro-fractured rocks again. We show that intact rock permeability increases non-linearly with increasing porosity and decreases with increasing effective pressure due to compactional closure of micro-fractures. Imparting a macro-fracture both increases the permeability of rocks and their sensitivity to effective pressure. The magnitude of permeability increase induced by the macro-fracture is more significant for dense rocks. We finally provide a general equation to estimate the permeability of intact and fractured rocks, forming a basis to constrain fluid flow in volcanic and geothermal systems.

Evaluation of Surface Resistivity Measurements as an Alternative to the Rapid Chloride Permeability Test for Quality Assurance and Acceptance - Implementation Report

DOT National Transportation Integrated Search

2012-10-01

Many contracting agencies currently use permeability specifications in portland cement concrete (PCC) pavements and structures. This project followed the implementation of the surface resistivity test (TR 233) on a field project in Louisiana. Additio...

Water Quality Performance of Three Side-by-Side Permeable Pavement Surface Materials: Three Year Update

EPA Science Inventory

Communities are increasingly installing structural low impact development (LID) practices to mange stormwater and reduce pollutant loads associated with stormwater runoff. Permeable pavement is a LID practice that has limited research on working-scale, side-by-side performance o...

Evaluation of surface resistivity measurements as an alternative to the rapid chloride permeability test for quality assurance and acceptance.

DOT National Transportation Integrated Search

2011-07-01

Many entities currently use permeability specifications in portland cement concrete (PCC) pavements and structures. This project investigated the use of a surface resistivity device as an indication of concretes ability to resist chloride ion pene...

Fracture network topology and characterization of structural permeability

NASA Astrophysics Data System (ADS)

Hansberry, Rowan; King, Rosalind; Holford, Simon

2017-04-01

There are two fundamental requirements for successful geothermal development: elevated temperatures at accessible depths, and a reservoir from which fluids can be extracted. The Australian geothermal sector has successfully targeted shallow heat, however, due in part to the inherent complexity of targeting permeability, obtaining adequate flow rates for commercial production has been problematic. Deep sedimentary aquifers are unlikely to be viable geothermal resources due to the effects of diagenetic mineral growth on rock permeability. Therefore, it is likely structural permeability targets, exploiting natural or induced fracture networks will provide the primary means for fluid flow in geothermal, as well as unconventional gas, reservoirs. Recent research has focused on the pattern and generation of crustal stresses across Australia, while less is known about the resultant networks of faults, joints, and veins that can constitute interconnected sub-surface permeability pathways. The ability of a fracture to transmit fluid is controlled by the orientation and magnitude of the in-situ stress field that acts on the fracture walls, rock strength, and pore pressure, as well as fracture properties such as aperture, orientation, and roughness. Understanding the distribution, orientation and character of fractures is key to predicting structural permeability. This project focuses on extensive mapping of fractures over various scales in four key Australian basins (Cooper, Otway, Surat and Perth) with the potential to host geothermal resources. Seismic attribute analysis is used in concert with image logs from petroleum wells, and field mapping to identify fracture networks that are usually not resolved in traditional seismic interpretation. We use fracture network topology to provide scale-invariant characterisation of fracture networks from multiple data sources to assess similarity between data sources, and fracture network connectivity. These results are compared with other permeability indicators such as drilling fluid losses, and pore pressure measurements. Initial work with these techniques has led to new developments in our ability to image subsurface faults and fractures at a variety of scales from independent datasets. We establish a strong relationship between features identified using seismic attribute analysis and interpreted natural fractures. However, care must be taken to use these methods in a case-by-case basis, as controls on fracture distribution and orientation can vary significantly with both regional and local influences. These results outline and effective method by which structural permeability can be assessed with existing petroleum datasets. However, unlike the broad stress field, mapping fracture orientation and characteristics within the Australian Continent is complicated as the distribution, geometry, areal extent and connectivity of fracture networks can vary significantly.

Permeability and selectivity of reverse osmosis membranes: correlation to swelling revisited.

PubMed

Dražević, Emil; Košutić, Krešimir; Freger, Viatcheslav

2014-02-01

Membrane swelling governs both rejection of solutes and permeability of polymeric membranes, however very few data have been available on swelling in water of salt-rejecting reverse osmosis (RO) membranes. This study assesses swelling, thickness and their relation to water permeability for four commercial polyamide (PA) RO membranes (SWC4+, ESPA1, XLE and BW30) using atomic force microscopy (AFM) and attenuated total reflection Fourier transform IR spectroscopy (ATR-FTIR). ATR-FTIR offered a significantly improved estimate of the actual barrier thickness of PA, given AFM is biased by porosity ("fluffy parts") or wiggling of the active layer or presence of a coating layer. Thus obtained intrinsic permeability (permeability times thickness) and selectivity of aromatic polyamides plotted versus swelling falls well on a general trend, along with previously reported data on several common materials showing RO and NF selectivity. The observed general trend may be rationalized by viewing the polymers as a random composite medium containing molecularly small pores. The results suggest that the combination of a rigid low dielectric matrix, limiting the pore size, with multiple hydrophilic H-bonding sites may be a common feature of RO/NF membranes, allowing both high permeability and selectivity. Crown Copyright © 2013. Published by Elsevier Ltd. All rights reserved.

Aneurysm permeability following coil embolization: packing density and coil distribution

PubMed Central

Chueh, Ju-Yu; Vedantham, Srinivasan; Wakhloo, Ajay K; Carniato, Sarena L; Puri, Ajit S; Bzura, Conrad; Coffin, Spencer; Bogdanov, Alexei A; Gounis, Matthew J

2015-01-01

Background Rates of durable aneurysm occlusion following coil embolization vary widely, and a better understanding of coil mass mechanics is desired. The goal of this study is to evaluate the impact of packing density and coil uniformity on aneurysm permeability. Methods Aneurysm models were coiled using either Guglielmi detachable coils or Target coils. The permeability was assessed by taking the ratio of microspheres passing through the coil mass to those in the working fluid. Aneurysms containing coil masses were sectioned for image analysis to determine surface area fraction and coil uniformity. Results All aneurysms were coiled to a packing density of at least 27%. Packing density, surface area fraction of the dome and neck, and uniformity of the dome were significantly correlated (p<0.05). Hence, multivariate principal components-based partial least squares regression models were used to predict permeability. Similar loading vectors were obtained for packing and uniformity measures. Coil mass permeability was modeled better with the inclusion of packing and uniformity measures of the dome (r2=0.73) than with packing density alone (r2=0.45). The analysis indicates the importance of including a uniformity measure for coil distribution in the dome along with packing measures. Conclusions A densely packed aneurysm with a high degree of coil mass uniformity will reduce permeability. PMID:25031179

Effects of dexamethasone on angiotensin II-induced changes of monolayer permeability and F-actin distribution in glomerular endothelial cells.

PubMed

Fang, Junyan; Wang, Miao; Zhang, Wei; Wang, Yingdeng

2013-11-01

The aim of this study was to investigate the changes in monolayer permeability and F-actin distribution caused by angiotensin II (Ang II)-induced injury in glomerular endothelial cells (GENCs) and the effects of dexamethasone on these changes. GENCs isolated and cultured from Wistar rats were used to examine the changes in monolayer permeability and F-actin distribution induced by Ang II. GENC permeability was evaluated by measuring the diffusion of biotin-conjugated bovine serum albumin (biotin-BSA) across a cell monolayer. The expression levels and distribution of F-actin were assessed by flow cytometry. The biotin-BSA concentrations were measured by capture enzyme-linked immunosorbent assay. Ang II at a concentration of 10 mg/l increased the permeability of the GENC monolayer at 6 h and 12 h (P<0.05 and P<0.01, respectively) and caused F-actin depolymerisation at 6 h and 12 h (P<0.01). The two effects attributed to Ang II were significantly inhibited by dexamethasone treatment (P<0.01). The increased permeability of the GENC monolayer induced by Ang II was significantly correlated with the depolymerisation of F-actin. Dexamethasone abrogated the Ang II-mediated damage to GENCs indicating that it may play an important role in protecting GENCs from injury.

Effects of metformin treatment on glioma-induced brain edema

PubMed Central

Zhao, Bin; Wang, Xiaoke; Zheng, Jun; Wang, Hailiang; Liu, Jun

2016-01-01

Considerable evidence has demonstrated that metformin can activate 5’-AMP-activated protein kinase (AMPK) signaling pathway, which plays a critical role in protection of endothelial cell permeability. Hence, the present study evaluated the effects of metformin on blood brain barrier permeability and AQP4 expression in vitro, and assessed the effects of metformin treatment on tumor-induced brain edema in vivo. Hypoxia or VEGF exposure enhanced bEnd3 endothelial cell monolayer permeability and attenuated the expression of tight junction proteins including Occludin, Claudin-5, ZO-1, and ZO-2. However, 0.5 mM metformin treatment protected bEnd3 endothelial cell monolayer from hypoxia or VEGF-induced permeability, which was correlated with increased expression of tight junction proteins. Furthermore, metformin treatment attenuated AQP4 protein expression in cultured astrocytes. Such an effect involved the activation of AMPK and inhibition of NF-κB. Finally, metformin treatment dose-dependently reduced glioma induced vascular permeability and cerebral edema in vivo in rats. Thus, our results suggested that metformin may protect endothelial cell tight junction, prevent damage to the blood brain barrier induced by brain tumor growth, and alleviate the formation of cerebral edema. Furthermore, since the formation of cytotoxic edema and AQP4 expression was positively correlated, our results indicated that metformin may reduce the formation of cytotoxic edema. However, given that AQP4 plays a key role in the elimination of cerebral edema, attenuation of AQP4 expression by metformin may reduce the elimination of cerebral edema. Hence, future studies will be necessary to dissect the specific mechanisms of metformin underlying the dynamics of tumor-induced brain edema in vivo. PMID:27648126

Effects of metformin treatment on glioma-induced brain edema.

PubMed

Zhao, Bin; Wang, Xiaoke; Zheng, Jun; Wang, Hailiang; Liu, Jun

2016-01-01

Considerable evidence has demonstrated that metformin can activate 5'-AMP-activated protein kinase (AMPK) signaling pathway, which plays a critical role in protection of endothelial cell permeability. Hence, the present study evaluated the effects of metformin on blood brain barrier permeability and AQP4 expression in vitro, and assessed the effects of metformin treatment on tumor-induced brain edema in vivo. Hypoxia or VEGF exposure enhanced bEnd3 endothelial cell monolayer permeability and attenuated the expression of tight junction proteins including Occludin, Claudin-5, ZO-1, and ZO-2. However, 0.5 mM metformin treatment protected bEnd3 endothelial cell monolayer from hypoxia or VEGF-induced permeability, which was correlated with increased expression of tight junction proteins. Furthermore, metformin treatment attenuated AQP4 protein expression in cultured astrocytes. Such an effect involved the activation of AMPK and inhibition of NF-κB. Finally, metformin treatment dose-dependently reduced glioma induced vascular permeability and cerebral edema in vivo in rats. Thus, our results suggested that metformin may protect endothelial cell tight junction, prevent damage to the blood brain barrier induced by brain tumor growth, and alleviate the formation of cerebral edema. Furthermore, since the formation of cytotoxic edema and AQP4 expression was positively correlated, our results indicated that metformin may reduce the formation of cytotoxic edema. However, given that AQP4 plays a key role in the elimination of cerebral edema, attenuation of AQP4 expression by metformin may reduce the elimination of cerebral edema. Hence, future studies will be necessary to dissect the specific mechanisms of metformin underlying the dynamics of tumor-induced brain edema in vivo.

Dietary management of acute diarrhoea in children: effect of fermented and amylase-digested weaning foods on intestinal permeability.

PubMed

Willumsen, J F; Darling, J C; Kitundu, J A; Kingamkono, R R; Msengi, A E; Mduma, B; Sullivan, K R; Tomkins, A M

1997-03-01

There is a strong relationship between diarrhoea, malnutrition, and intestinal integrity. To investigate the effect of different dietary-treatment on intestinal permeability during acute diarrhoea, 87 Tanzanian children aged 6-25 months were recruited to this study when admitted to hospital. Children with acute diarrhoea were rehydrated and then randomly assigned to one of three dietary treatment groups: a conventional low-energy density porridge, a high-energy density amylase digested porridge (AMD), or a high-energy density amylase digested and then fermented porridge (FAD). Lactulose/mannitol permeability tests were performed on admission, at 3 days, and at follow-up 2 and 4 weeks after discharge. The lactulose/mannitol (L/M) ratios were compared between dietary treatment groups and to a group of age-matched, healthy control subjects. Children with diarrhoea had higher L/M ratios (geometric mean 0.85, 95% CI 0.68-1.05) compared with control subjects (0.14, 0.12-0.17) on admission. There was a significant difference in the change in L/M ratio between admission and 3 days between dietary treatment groups in favour of the FAD group (p < 0.05). Dietary treatment and intestinal damage at admission explain 13.5% of the variation in L/M ratio, but when age at admission and age at weaning are included as covariants, 21.9% is explained. FAD porridge seems to be more effective in the treatment of intestinal permeability than AMD or conventional porridge. Urinary lactose concentrations in spot urine samples taken prior to the permeability test were also measured. There was a significant correlation with the L/M ratio (correlation coefficient = 0.62, p < 0.001).

Decreased melatonin secretion is associated with increased intestinal permeability and marker of endotoxemia in alcoholics

PubMed Central

Gorenz, Annika; Shaikh, Maliha; Desai, Vishal; Forsyth, Christopher; Fogg, Louis; Burgess, Helen J.; Keshavarzian, Ali

2015-01-01

Chronic heavy alcohol use is known to cause gut leakiness and alcoholic liver disease (ALD), but only 30% of heavy drinkers develop increased intestinal permeability and ALD. The hypothesis of this study was that disruption of circadian rhythms is a potential risk factor in actively drinking alcoholics for gut leakiness and endotoxemia. We studied 20 subjects with alcohol use disorder (AD) and 17 healthy controls (HC, 6 day workers, 11 night workers). Subjects wore a wrist actiwatch for 7 days and underwent a 24-h dim light phase assessment and urine collection for intestinal permeability. The AD group had significantly less total sleep time and increased fragmentation of sleep (P < 0.05). AD also had significantly lower plasma melatonin levels compared with the HC [mean area under the curve (AUC) 322.78 ± 228.21 vs. 568.75 ± 304.26 pg/ml, P = 0.03]. In the AD group, AUC of melatonin was inversely correlated with small bowel and colonic intestinal permeability (lactulose-to-mannitol ratio, r = −0.39, P = 0.03; urinary sucralose, r = −0.47, P = 0.01). Cosinor analysis of lipopolysaccharide-binding protein (marker of endotoxemia) and lipopolysaccharide every 4 h for 24 h in HC and AD subjects had a midline estimating statistic of rhythm of 5,026.15 ± 409.56 vs. 6,818.02 ± 628.78 ng/ml (P < 0.01) and 0.09 ± 0.03 vs. 0.15 ± 0.19 EU/ml (P < 0.05), respectively. We found plasma melatonin was significantly lower in the AD group, and lower melatonin levels correlated with increased intestinal permeability and a marker of endotoxemia. Our study suggests the suppression of melatonin in AD may promote gut leakiness and endotoxemia. PMID:25907689

Electrical and fluid transport in consolidated sphere packs

NASA Astrophysics Data System (ADS)

Zhan, Xin; Schwartz, Lawrence M.; Toksöz, M. Nafi

2015-05-01

We calculate geometrical and transport properties (electrical conductivity, permeability, specific surface area, and surface conductivity) of a family of model granular porous media from an image based representation of its microstructure. The models are based on the packing described by Finney and cover a wide range of porosities. Finite difference methods are applied to solve for electrical conductivity and hydraulic permeability. Two image processing methods are used to identify the pore-grain interface and to test correlations linking permeability to electrical conductivity. A three phase conductivity model is developed to compute surface conductivity associated with the grain-pore interface. Our results compare well against empirical models over the entire porosity range studied. We conclude by examining the influence of image resolution on our calculations.

Monitoring pulmonary vascular permeability using radiolabeled transferrin

DOE Office of Scientific and Technical Information (OSTI.GOV)

Basran, G.S.; Hardy, J.G.

1988-07-01

A simple, noninvasive technique for monitoring pulmonary vascular permeability in patients in critical care units is discussed. High vascular permeability is observed in patients with clinically defined adult respiratory distress syndrome (ARDS) but not in patients with hydrostatic pulmonary edema or in patients with minor pulmonary insults who are considered to be at risk of developing ARDS. The technique has been used in the field of therapeutics and pharmacology to test the effects of the putative antipermeability agents methylprednisolone and terbutaline sulfate. There appears to be a good correlation between the acute inhibitory effect of either drug on transferrin exudationmore » and patient prognosis. Thus, a byproduct of such drug studies may be an index of survival in patients with established ARDS.« less

Effect of lactobacilli on paracellular permeability in the gut.

PubMed

Ahrne, Siv; Hagslatt, Marie-Louise Johansson

2011-01-01

Paracellular permeability is determined by the complex structures of junctions that are located between the epithelial cells. Already in 1996, it was shown that the human probiotic strain Lactobacillus plantarum 299v and the rat-originating strain Lactobacillus reuteri R2LC could reduce this permeability in a methotrexate-induced colitis model in the rat. Subsequently, many animal models and cell culture systems have shown indications that lactobacilli are able to counteract increased paracellular permeability evoked by cytokines, chemicals, infections, or stress. There have been few human studies focusing on the effect of lactobacilli on intestinal paracellular permeability but recently it has been shown that they could influence the tight junctions. More precisely, short-term administration of L. plantarum WCSF1 to healthy volunteers increased the relocation of occludin and ZO-1 into the tight junction area between duodenal epithelial cells.

The effect of platelets on fibrin gel structure formed in the presence of recombinant factor VIIa in hemophilia plasma and in plasma from a patient with Glanzmann thrombasthenia.

PubMed

He, S; Ekman, G Jacobsson; Hedner, U

2005-02-01

Fibrin gel structure has been shown to be dependent on the thrombin concentration as well as the rate of thrombin generation. Accordingly, factor VIII (FVIII)- and FIX-deficient plasma (hemophilia A and B) form loose fibrin clots with high permeability constants. By adding rFVIIa in vitro to FVIII-deficient plasma containing platelets (frozen and thawed), the fibrin gel permeability constant normalized, indicating that extra rFVIIa (1.2 microg mL(-1) or higher) induced a tight fibrin structure. Thrombin generation is highly dependent on the number of platelets, and in this study it was demonstrated that the addition of rFVIIa (5 microg mL(-1)) normalizes the fibrin gel permeability in samples containing platelets (frozen-thawed) in numbers of at least down to 20 x 10(6) mL(-1). The effect of rFVIIa was not observed when unfrozen platelets instead of frozen-thawed platelets were added. Neither was any effect on the fibrin permeability seen, in the presence of annexin V, known to block the effect of phospholipids on the platelet surface. This indicates an important role of platelet phospholipids for the effect of rFVIIa. A similar effect on the fibrin permeability of rFVIIa was observed when added to platelet-rich plasma from a patient with Glanzmann thrombasthenia. Recombinant FVIIa has been found to induce hemostasis in patients with hemophilia and inhibitors against FVIII/FIX as well as in patients with Glanzmann thrombasthenia, indicating the importance of the formation of a tight fibrin gel structure, more resistant against premature proteolysis, for maintaining hemostasis. In conclusion, the addition of rFVIIa (5 microg mL(-1)) also substantially decreased the permeability constant of fibrin gels formed in FVIII-deficient plasma in the presence of low numbers of frozen-thawed platelets (down to 20 x 10(6) mL(-1)). A similar pattern was obtained in plasma from a Glanzmann patient. No effect was found in the presence of unfrozen instead of frozen-thawed platelets. Annexin V blocked any effect of rFVIIa. A normalization of the overall fibrinolysis potential (OFP) during the same condition supports the effect of rFVIIa on the fibrin permeability in the presence of a limited number of platelets.

Claudins and the Modulation of Tight Junction Permeability

PubMed Central

Günzel, Dorothee

2013-01-01

Claudins are tight junction membrane proteins that are expressed in epithelia and endothelia and form paracellular barriers and pores that determine tight junction permeability. This review summarizes our current knowledge of this large protein family and discusses recent advances in our understanding of their structure and physiological functions. PMID:23589827

Evaluation of Surface Resistivity Measurements as an Alternative to the Rapid Chloride Permeability Test for Quality Assurance and Acceptance : Tech Summary

DOT National Transportation Integrated Search

2012-10-01

Many contracting agencies currently use permeability specifi cations in Portland cement concrete (PCC) : pavements and structures. This project followed the implementation of the surface resistivity test TR 233 : on a fi eld project in Louisiana. Add...

Air Permeability and Infiltration Differences Associated with Grass and Gravel Streambeds in an Urban Environment

NASA Astrophysics Data System (ADS)

Witte, B.; Ferlin, C.; Gallo, E. L.; Lohse, K. A.; Meixner, T.; Brooks, P. D.; Ferre, T. A.

2010-12-01

Storm water infiltration and recharge is a key component of sustainable water resource management in rapidly expanding urban areas of arid and semi-arid regions. Near surface streambed permeability affects the partitioning of stream flows to infiltration and subsequent groundwater recharge, or increasing runoff to be conveyed downstream. Therefore, in this study, we assessed how air permeability varied among distinct stream beds of ephemeral urban washes in the semi-arid southwest. A Soil Core Air Permeameter (SCAP) was used to quantify in situ air permeability at sixteen sites in the Tucson, Arizona metropolitan area. Significant air permeability differences between gravel and grass lined ephemeral stream beds were found, where the average air permeability at the gravel sites was 3.58 x10-2 ± 1.11 x 10-2 mm2 (mean ± std error) and the air permeability at the grass sites was 7.13 x 10-3 ± 2.02 x 10-3 mm2. A previously published linear correlation between air permeability and saturated hydraulic conductivity was used to predict saturated hydraulic conductivity at the ephemeral stream beds of this study. Preliminary results suggest that the predicted saturated hydraulic conductivity values are comparable to ring infiltration measurements taken in the field. Findings from this study indicate that the higher porosity and decreased vegetation at the gravel lined urban washes enhanced infiltration rates, which may lead to decreased storm water runoff. However, higher infiltration rates at gravel lined sites may result in less time for processing of potential pollutants with negative implications for water quality.

Silicon-based Porous Ceramics via Freeze Casting of Preceramic Polymers

NASA Astrophysics Data System (ADS)

Naviroj, Maninpat

Freeze casting is a technique for processing porous materials that has drawn significant attention for its effectiveness in producing a variety of tailorable pore structures for ceramics, metals, and polymers. With freeze casting, pores are generated based on a solidification process where ice crystals act as a sacrificial template which can eventually be sublimated to create pores. While the majority of freeze-casting studies have been performed using conventional ceramic suspensions, this work explores an alternative processing route by freeze casting with preceramic polymer solutions. Significant differences exist between freeze casting of a particulate suspension and a polymeric solution. These changes affect the processing method, solidification behavior, and pore structure, thereby introducing new challenges and possibilities for the freeze-casting technique. The first part of this study explored the processing requirements involved with freeze casting of preceramic polymers, along with methods to control the resulting pore structure. Solvent choice, freezing front velocity, and polymer concentration were used as processing variables to manipulate the pore structures. A total of seven organic solvents were freeze cast with a polymethylsiloxane preceramic polymer to produce ceramics with isotropic, dendritic, prismatic, and lamellar pore morphologies. Changes in freezing front velocity and polymer concentration were shown to influence pore size, shape, and connectivity. Differences between suspension- and solution-based samples freeze cast under equivalent conditions were also investigated. Certain solidification microstructures were strongly affected by the presence of suspended particles, creating differences between pore structures generated from the same solvents. Additionally, processing of solution-based samples were found to be the more facile technique. Compressive strength and water permeability of dendritic and lamellar structures were analyzed to determine functional differences between the pore structures. Results show that dendritic structures were up to 30 times stronger, while lamellar structures provided higher permeability constants. A change in freezing front velocity was shown to significantly affect permeability but not compressive strength. Finally, improved pore alignment along the freezing direction was achieved by controlling the nucleation and growth of solvent crystals through the use of a grain-selection template. Dendritic samples freeze cast with a template showed substantial increase in pore alignment, as determined by image analysis and permeability tests, with the permeability constant increasing by up to 6-fold when compared to a control sample.

Permeability and Microstructure of Suspension Plasma-Sprayed YSZ Electrolytes for SOFCs on Various Substrates

NASA Astrophysics Data System (ADS)

Marr, Michael; Kesler, Olivera

2012-12-01

Yttria-stabilized zirconia electrolyte coatings for solid oxide fuel cells were deposited by suspension plasma spraying using a range of spray conditions and a variety of substrates, including finely structured porous stainless steel disks and cathode layers on stainless steel supports. Electrolyte permeability values and trends were found to be highly dependent on which substrate was used. The most gas-tight electrolyte coatings were those deposited directly on the porous metal disks. With this substrate, permeability was reduced by increasing the torch power and reducing the stand-off distance to produce dense coating microstructures. On the substrates with cathodes, electrolyte permeability was reduced by increasing the stand-off distance, which reduced the formation of segmentation cracks and regions of aligned and concentrated porosity. The formation mechanisms of the various permeability-related coating features are discussed and strategies for reducing permeability are presented. The dependences of electrolyte deposition efficiency and surface roughness on process conditions and substrate properties are also presented.

Stochastic simulation of uranium migration at the Hanford 300 Area.

PubMed

Hammond, Glenn E; Lichtner, Peter C; Rockhold, Mark L

2011-03-01

This work focuses on the quantification of groundwater flow and subsequent U(VI) transport uncertainty due to heterogeneity in the sediment permeability at the Hanford 300 Area. U(VI) migration at the site is simulated with multiple realizations of stochastically-generated high resolution permeability fields and comparisons are made of cumulative water and U(VI) flux to the Columbia River. The massively parallel reactive flow and transport code PFLOTRAN is employed utilizing 40,960 processor cores on DOE's petascale Jaguar supercomputer to simultaneously execute 10 transient, variably-saturated groundwater flow and U(VI) transport simulations within 3D heterogeneous permeability fields using the code's multi-realization simulation capability. Simulation results demonstrate that the cumulative U(VI) flux to the Columbia River is less responsive to fine scale heterogeneity in permeability and more sensitive to the distribution of permeability within the river hyporheic zone and mean permeability of larger-scale geologic structures at the site. Copyright © 2010 Elsevier B.V. All rights reserved.

Influence of capillary end effects on steady-state relative permeability estimates from direct pore-scale simulations

NASA Astrophysics Data System (ADS)

Guédon, Gaël Raymond; Hyman, Jeffrey De'Haven; Inzoli, Fabio; Riva, Monica; Guadagnini, Alberto

2017-12-01

We investigate and characterize the influence of capillary end effects on steady-state relative permeabilities obtained in pore-scale numerical simulations of two-phase flows. Our study is motivated by the observation that capillary end effects documented in two-phase laboratory-scale experiments can significantly influence permeability estimates. While numerical simulations of two-phase flows in reconstructed pore-spaces are increasingly employed to characterize relative permeabilities, a phenomenon which is akin to capillary end effects can also arise in such analyses due to the constraints applied at the boundaries of the computational domain. We profile the relative strength of these capillary end effects on the calculation of steady-state relative permeabilities obtained within randomly generated porous micro-structures using a finite volume-based two-phase flow solver. We suggest a procedure to estimate the extent of the regions influenced by these capillary end effects, which in turn allows for the alleviation of bias in the estimation of relative permeabilities.

Gas permeability of ice-templated, unidirectional porous ceramics

NASA Astrophysics Data System (ADS)

Seuba, Jordi; Deville, Sylvain; Guizard, Christian; Stevenson, Adam J.

2016-01-01

We investigate the gas flow behavior of unidirectional porous ceramics processed by ice-templating. The pore volume ranged between 54% and 72% and pore size between 2.9 ?m and 19.1 ?m. The maximum permeability (?? m?) was measured in samples with the highest total pore volume (72%) and pore size (19.1 ?m). However, we demonstrate that it is possible to achieve a similar permeability (?? m?) at 54% pore volume by modification of the pore shape. These results were compared with those reported and measured for isotropic porous materials processed by conventional techniques. In unidirectional porous materials tortuosity (?) is mainly controlled by pore size, unlike in isotropic porous structures where ? is linked to pore volume. Furthermore, we assessed the applicability of Ergun and capillary model in the prediction of permeability and we found that the capillary model accurately describes the gas flow behavior of unidirectional porous materials. Finally, we combined the permeability data obtained here with strength data for these materials to establish links between strength and permeability of ice-templated materials.

Seed Hydropriming and Smoke Water Significantly Improve Low-Temperature Germination of Lupinus angustifolius L.

PubMed

Płażek, Agnieszka; Dubert, Franciszek; Kopeć, Przemysław; Dziurka, Michał; Kalandyk, Agnieszka; Pastuszak, Jakub; Wolko, Bogdan

2018-03-26

Seed imbibition under cold temperature is dangerous when dry seeds have relatively low water content. The aim of this study was to investigate germination of 20 lines/cultivars of narrow-leaf lupine at 7 °C (cold) and 13 °C (control) under the influence of smoke water and following seed hydropriming for 3 h at 20 °C. The efficacy of individual treatments was examined with regard to seed protection during low-temperature germination. Based on seed germination, vigour at cold was evaluated four days after sowing by means of hypocotyl length, the studied lines/cultivars were divided into three groups with low, high and very high germination rates. Germination vigour correlated with cell membrane permeability, dehydrogenase activity and abscisic acid (ABA) content and was analysed in the seeds one day after sowing. Gibberellin content did not correlate with germination vigour. The seeds of weakly germinating lines/cultivars had the highest cell permeability and ABA content as well as the lowest amylolytic activity at both studied temperatures. Additionally, the vigour of weakly germinating seeds at 7 °C correlated with dehydrogenase activity. Three-hour hydropriming was the most effective for seed germination under cold due to reduced cell membrane permeability and ABA level. Stimulating effects of smoke water on germination under cold could be explained by enhanced dehydrogenase activity.

The role of mitosis in LDL transport through cultured endothelial cell monolayers

PubMed Central

Cancel, Limary M.

2011-01-01

We (7) have previously shown that leaky junctions associated with dying or dividing cells are the dominant pathway for LDL transport under convective conditions, accounting for >90% of the transport. We (8) have also recently shown that the permeability of bovine aortic endothelial cell monolayers is highly correlated with their rate of apoptosis and that inhibiting apoptosis lowers the permeability of the monolayers to LDL. To explore the role of mitosis in the leaky junction pathway, the microtubule-stabilizing agent paclitaxel was used to alter the rate of mitosis, and LDL flux and water flux (Jv) were measured. Control monolayers had an average mitosis rate of 0.029%. Treatment with paclitaxel (2.5 μM) for 1.5, 3, 4.5, or 6 h yielded increasing rates of mitosis ranging from 0.099% to 1.03%. The convective permeability of LDL (Pe) increased up to fivefold, whereas Jv increased up to threefold, over this range of mitosis rates. We found strong correlations between the mitosis rate and both Pe and Jv. However, compared with our previous apoptosis study (8), we found that mitosis was only half as effective as apoptosis in increasing Pe. The results led us to conclude that while mitotsis-related leaky junctions might play a role in the initial infiltration of LDL into the artery wall, the progression of atherosclerosis might be more closely correlated with apoptosis-related leaky junctions. PMID:21169397

Complementary analyses of hollow cylindrical unioriented permanent magnet (HCM) with high permeability external layer.

PubMed

Lobo, Carlos M S; Tosin, Giancarlo; Baader, Johann E; Colnago, Luiz A

2017-10-01

In this article, several studies based on analytical expressions and computational simulations on Hollow Cylindrical Magnets with an external soft ferromagnetic material (HCM magnets) are presented. Electromagnetic configurations, as well as permanent-magnet-based structures, are studied in terms of magnetic field strength and homogeneity. Permanent-magnet-based structures are further analyzed in terms of the anisotropy of the magnetic permeability. It was found that the HCM magnets produce a highly homogeneous magnetic field as long as the magnetic material is isotropic. The dependency of the magnetic field strength and homogeneity in terms of the anisotropy of the magnetic permeability is also explored here. These magnets can potentially be used in medium-resolution NMR spectrometers and high-field NMR spectrometers. Copyright © 2017 Elsevier Inc. All rights reserved.

Discontinuities in effective permeability due to fracture percolation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hyman, Jeffrey De'Haven; Karra, Satish; Carey, James William

Motivated by a triaxial coreflood experiment with a sample of Utica shale where an abrupt jump in permeability was observed, possibly due to the creation of a percolating fracture network through the sample, we perform numerical simulations based on the experiment to characterize how the effective permeability of otherwise low-permeability porous media depends on fracture formation, connectivity, and the contrast between the fracture and matrix permeabilities. While a change in effective permeability due to fracture formation is expected, the dependence of its magnitude upon the contrast between the matrix permeability and fracture permeability and the fracture network structure is poorlymore » characterized. We use two different high-fidelity fracture network models to characterize how effective permeability changes as percolation occurs. The first is a dynamic two-dimensional fracture propagation model designed to mimic the laboratory settings of the experiment. The second is a static three-dimensional discrete fracture network (DFN) model, whose fracture and network statistics are based on the fractured sample of Utica shale. Once the network connects the inflow and outflow boundaries, the effective permeability increases non-linearly with network density. In most networks considered, a jump in the effective permeability was observed when the embedded fracture network percolated. We characterize how the magnitude of the jump, should it occur, depends on the contrast between the fracture and matrix permeabilities. For small contrasts between the matrix and fracture permeabilities the change is insignificant. However, for larger contrasts, there is a substantial jump whose magnitude depends non-linearly on the difference between matrix and fracture permeabilities. A power-law relationship between the size of the jump and the difference between the matrix and fracture permeabilities is observed. In conclusion, the presented results underscore the importance of fracture network topology on the upscaled properties of the porous medium in which it is embedded.« less

Discontinuities in effective permeability due to fracture percolation

DOE PAGES

Hyman, Jeffrey De'Haven; Karra, Satish; Carey, James William; ...

2018-01-31

Motivated by a triaxial coreflood experiment with a sample of Utica shale where an abrupt jump in permeability was observed, possibly due to the creation of a percolating fracture network through the sample, we perform numerical simulations based on the experiment to characterize how the effective permeability of otherwise low-permeability porous media depends on fracture formation, connectivity, and the contrast between the fracture and matrix permeabilities. While a change in effective permeability due to fracture formation is expected, the dependence of its magnitude upon the contrast between the matrix permeability and fracture permeability and the fracture network structure is poorlymore » characterized. We use two different high-fidelity fracture network models to characterize how effective permeability changes as percolation occurs. The first is a dynamic two-dimensional fracture propagation model designed to mimic the laboratory settings of the experiment. The second is a static three-dimensional discrete fracture network (DFN) model, whose fracture and network statistics are based on the fractured sample of Utica shale. Once the network connects the inflow and outflow boundaries, the effective permeability increases non-linearly with network density. In most networks considered, a jump in the effective permeability was observed when the embedded fracture network percolated. We characterize how the magnitude of the jump, should it occur, depends on the contrast between the fracture and matrix permeabilities. For small contrasts between the matrix and fracture permeabilities the change is insignificant. However, for larger contrasts, there is a substantial jump whose magnitude depends non-linearly on the difference between matrix and fracture permeabilities. A power-law relationship between the size of the jump and the difference between the matrix and fracture permeabilities is observed. In conclusion, the presented results underscore the importance of fracture network topology on the upscaled properties of the porous medium in which it is embedded.« less

Real-Time Maps of Fluid Flow Fields in Porous Biomaterials

PubMed Central

Mack, Julia J.; Youssef, Khalid; Noel, Onika D.V.; Lake, Michael P.; Wu, Ashley; Iruela-Arispe, M. Luisa; Bouchard, Louis-S.

2013-01-01

Mechanical forces such as fluid shear have been shown to enhance cell growth and differentiation, but knowledge of their mechanistic effect on cells is limited because the local flow patterns and associated metrics are not precisely known. Here we present real-time, noninvasive measures of local hydrodynamics in 3D biomaterials based on nuclear magnetic resonance. Microflow maps were further used to derive pressure, shear and fluid permeability fields. Finally, remodeling of collagen gels in response to precise fluid flow parameters was correlated with structural changes. It is anticipated that accurate flow maps within 3D matrices will be a critical step towards understanding cell behavior in response to controlled flow dynamics. PMID:23245922

Using artificial intelligence to predict permeability from petrographic data

NASA Astrophysics Data System (ADS)

Ali, Maqsood; Chawathé, Adwait

2000-10-01

Petrographic data collected during thin section analysis can be invaluable for understanding the factors that control permeability distribution. Reliable prediction of permeability is important for reservoir characterization. The petrographic elements (mineralogy, porosity types, cements and clays, and pore morphology) interact with each other uniquely to generate a specific permeability distribution. It is difficult to quantify accurately this interaction and its consequent effect on permeability, emphasizing the non-linear nature of the process. To capture these non-linear interactions, neural networks were used to predict permeability from petrographic data. The neural net was used as a multivariate correlative tool because of its ability to learn the non-linear relationships between multiple input and output variables. The study was conducted on the upper Queen formation called the Shattuck Member (Permian age). The Shattuck Member is composed of very fine-grained arkosic sandstone. The core samples were available from the Sulimar Queen and South Lucky Lake fields located in Chaves County, New Mexico. Nineteen petrographic elements were collected for each permeability value using a combined minipermeameter-petrographic technique. In order to reduce noise and overfitting the permeability model, these petrographic elements were screened, and their control (ranking) with respect to permeability was determined using fuzzy logic. Since the fuzzy logic algorithm provides unbiased ranking, it was used to reduce the dimensionality of the input variables. Based on the fuzzy logic ranking, only the most influential petrographic elements were selected as inputs for permeability prediction. The neural net was trained and tested using data from Well 1-16 in the Sulimar Queen field. Relying on the ranking obtained from the fuzzy logic analysis, the net was trained using the most influential three, five, and ten petrographic elements. A fast algorithm (the scaled conjugate gradient method) was used to optimize the network weight matrix. The net was then successfully used to predict the permeability in the nearby South Lucky Lake field, also in the Shattuck Member. This study underscored various important aspects of using neural networks as non-linear estimators. The neural network learnt the complex relationships between petrographic control and permeability. By predicting permeability in a remotely-located, yet geologically similar field, the generalizing capability of the neural network was also demonstrated. In old fields, where conventional petrographic analysis was routine, this technique may be used to supplement core permeability estimates.

Petroleum system of the Shelf Rift Basin, East China Sea

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cunningham, A.C.; Armentrout, J.M.; Prebish, M.

1996-12-31

The Tertiary section of the Oujioang and Quiontang Depressions of the East China Sea Basin consists of at least eight rift-related depositional sequences identified seismically by regionally significant onlap and truncation surfaces. These sequences are calibrated by several wells including the Wenzhou 6-1-1 permitting extrapolation of petroleum system elements using seismic facies analysis. Gas and condensate correlated to non-marine source rocks and reservoired in sandstone at the Pinghu field to the north of the study area provides an known petroleum system analogue. In the Shelf Rift Basin, synrift high-amplitude parallel reflections within the graben axes correlate with coaly siltstone stratamore » and are interpreted as coastal plain and possibly lacustrine facies with source rock potential. Synrift clinoform seismic facies prograding from the northwest footwall correlate with non-marine to marginal marine conglomerate, sandstone and siltstone, and are interpreted as possible delta or fan-delta facies with reservoir potential although porosity and permeability is low within the Wenzhou 6-1-1 well. Post-rift thermal sag sequences are characterized by parallel and relatively continuous seismic reflections and locally developed clinoform packages. These facies correlate with porous and permeable marine sandstone and siltstone. Shales of potential sealing capacity occur within marine flooding intervals of both the synrift and post-rift sequences. Traps consist of differentially rotated synrift fill, and post-rift inversion anticlines. Major exploration risk factors include migration from the synrift coaly source rocks to the post-rift porous and permeable sandstones, and seismic imaging and drilling problems associated with extensive Tertiary igneous intrusions.« less

Petroleum system of the Shelf Rift Basin, East China Sea

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cunningham, A.C.; Armentrout, J.M.; Prebish, M.

1996-01-01

The Tertiary section of the Oujioang and Quiontang Depressions of the East China Sea Basin consists of at least eight rift-related depositional sequences identified seismically by regionally significant onlap and truncation surfaces. These sequences are calibrated by several wells including the Wenzhou 6-1-1 permitting extrapolation of petroleum system elements using seismic facies analysis. Gas and condensate correlated to non-marine source rocks and reservoired in sandstone at the Pinghu field to the north of the study area provides an known petroleum system analogue. In the Shelf Rift Basin, synrift high-amplitude parallel reflections within the graben axes correlate with coaly siltstone stratamore » and are interpreted as coastal plain and possibly lacustrine facies with source rock potential. Synrift clinoform seismic facies prograding from the northwest footwall correlate with non-marine to marginal marine conglomerate, sandstone and siltstone, and are interpreted as possible delta or fan-delta facies with reservoir potential although porosity and permeability is low within the Wenzhou 6-1-1 well. Post-rift thermal sag sequences are characterized by parallel and relatively continuous seismic reflections and locally developed clinoform packages. These facies correlate with porous and permeable marine sandstone and siltstone. Shales of potential sealing capacity occur within marine flooding intervals of both the synrift and post-rift sequences. Traps consist of differentially rotated synrift fill, and post-rift inversion anticlines. Major exploration risk factors include migration from the synrift coaly source rocks to the post-rift porous and permeable sandstones, and seismic imaging and drilling problems associated with extensive Tertiary igneous intrusions.« less

Convective mixing in vertically-layered porous media: The linear regime and the onset of convection

NASA Astrophysics Data System (ADS)

Ghorbani, Zohreh; Riaz, Amir; Daniel, Don

2017-08-01

We study the effect of permeability heterogeneity on the stability of gravitationally unstable, transient, diffusive boundary layers in porous media. Permeability is taken to vary periodically in the horizontal plane normal to the direction of gravity. In contrast to the situation for vertical permeability variation, the horizontal perturbation structures are multimodal. We therefore use a two-dimensional quasi-steady eigenvalue analysis as well as a complementary initial value problem to investigate the stability behavior in the linear regime, until the onset of convection. We find that thick permeability layers enhance instability compared with thin layers when heterogeneity is increased. On the contrary, for thin layers the instability is weakened progressively with increasing heterogeneity to the extent that the corresponding homogeneous case is more unstable. For high levels of heterogeneity, we find that a small change in the permeability field results in large variations in the onset time of convection, similar to the instability event in the linear regime. However, this trend does not persist unconditionally because of the reorientation of vorticity pairs due to the interaction of evolving perturbation structures with heterogeneity. Consequently, an earlier onset of instability does not necessarily imply an earlier onset of convection. A resonant amplification of instability is observed within the linear regime when the dominant perturbation mode is equal to half the wavenumber of permeability variation. On the other hand, a substantial damping occurs when the perturbation mode is equal to the harmonic and sub-harmonic components of the permeability wavenumber. The phenomenon of such harmonic interactions influences both the onset of instability as well as the onset of convection.

Convective mixing in vertically-layered porous media: The linear regime and the onset of convection

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ghorbani, Zohreh; Riaz, Amir; Daniel, Don

In this paper, we study the effect of permeability heterogeneity on the stability of gravitationally unstable, transient, diffusive boundary layers in porous media. Permeability is taken to vary periodically in the horizontal plane normal to the direction of gravity. In contrast to the situation for vertical permeability variation, the horizontal perturbation structures are multimodal. We therefore use a two-dimensional quasi-steady eigenvalue analysis as well as a complementary initial value problem to investigate the stability behavior in the linear regime, until the onset of convection. We find that thick permeability layers enhance instability compared with thin layers when heterogeneity is increased.more » On the contrary, for thin layers the instability is weakened progressively with increasing heterogeneity to the extent that the corresponding homogeneous case is more unstable. For high levels of heterogeneity, we find that a small change in the permeability field results in large variations in the onset time of convection, similar to the instability event in the linear regime. However, this trend does not persist unconditionally because of the reorientation of vorticity pairs due to the interaction of evolving perturbation structures with heterogeneity. Consequently, an earlier onset of instability does not necessarily imply an earlier onset of convection. A resonant amplification of instability is observed within the linear regime when the dominant perturbation mode is equal to half the wavenumber of permeability variation. On the other hand, a substantial damping occurs when the perturbation mode is equal to the harmonic and sub-harmonic components of the permeability wavenumber. Finally, the phenomenon of such harmonic interactions influences both the onset of instability as well as the onset of convection.« less

Convective mixing in vertically-layered porous media: The linear regime and the onset of convection

DOE PAGES

Ghorbani, Zohreh; Riaz, Amir; Daniel, Don

2017-08-02

In this paper, we study the effect of permeability heterogeneity on the stability of gravitationally unstable, transient, diffusive boundary layers in porous media. Permeability is taken to vary periodically in the horizontal plane normal to the direction of gravity. In contrast to the situation for vertical permeability variation, the horizontal perturbation structures are multimodal. We therefore use a two-dimensional quasi-steady eigenvalue analysis as well as a complementary initial value problem to investigate the stability behavior in the linear regime, until the onset of convection. We find that thick permeability layers enhance instability compared with thin layers when heterogeneity is increased.more » On the contrary, for thin layers the instability is weakened progressively with increasing heterogeneity to the extent that the corresponding homogeneous case is more unstable. For high levels of heterogeneity, we find that a small change in the permeability field results in large variations in the onset time of convection, similar to the instability event in the linear regime. However, this trend does not persist unconditionally because of the reorientation of vorticity pairs due to the interaction of evolving perturbation structures with heterogeneity. Consequently, an earlier onset of instability does not necessarily imply an earlier onset of convection. A resonant amplification of instability is observed within the linear regime when the dominant perturbation mode is equal to half the wavenumber of permeability variation. On the other hand, a substantial damping occurs when the perturbation mode is equal to the harmonic and sub-harmonic components of the permeability wavenumber. Finally, the phenomenon of such harmonic interactions influences both the onset of instability as well as the onset of convection.« less

Purely in silico BCS classification: science based quality standards for the world's drugs.

PubMed

Dahan, Arik; Wolk, Omri; Kim, Young Hoon; Ramachandran, Chandrasekharan; Crippen, Gordon M; Takagi, Toshihide; Bermejo, Marival; Amidon, Gordon L

2013-11-04

BCS classification is a vital tool in the development of both generic and innovative drug products. The purpose of this work was to provisionally classify the world's top selling oral drugs according to the BCS, using in silico methods. Three different in silico methods were examined: the well-established group contribution (CLogP) and atom contribution (ALogP) methods, and a new method based solely on the molecular formula and element contribution (KLogP). Metoprolol was used as the benchmark for the low/high permeability class boundary. Solubility was estimated in silico using a thermodynamic equation that relies on the partition coefficient and melting point. The validity of each method was affirmed by comparison to reference data and literature. We then used each method to provisionally classify the orally administered, IR drug products found in the WHO Model list of Essential Medicines, and the top-selling oral drug products in the United States (US), Great Britain (GB), Spain (ES), Israel (IL), Japan (JP), and South Korea (KR). A combined list of 363 drugs was compiled from the various lists, and 257 drugs were classified using the different in silico permeability methods and literature solubility data, as well as BDDCS classification. Lastly, we calculated the solubility values for 185 drugs from the combined set using in silico approach. Permeability classification with the different in silico methods was correct for 69-72.4% of the 29 reference drugs with known human jejunal permeability, and for 84.6-92.9% of the 14 FDA reference drugs in the set. The correlations (r(2)) between experimental log P values of 154 drugs and their CLogP, ALogP and KLogP were 0.97, 0.82 and 0.71, respectively. The different in silico permeability methods produced comparable results: 30-34% of the US, GB, ES and IL top selling drugs were class 1, 27-36.4% were class 2, 22-25.5% were class 3, and 5.46-14% were class 4 drugs, while ∼8% could not be classified. The WHO list included significantly less class 1 and more class 3 drugs in comparison to the countries' lists, probably due to differences in commonly used drugs in developing vs industrial countries. BDDCS classified more drugs as class 1 compared to in silico BCS, likely due to the more lax benchmark for metabolism (70%), in comparison to the strict permeability benchmark (metoprolol). For 185 out of the 363 drugs, in silico solubility values were calculated, and successfully matched the literature solubility data. In conclusion, relatively simple in silico methods can be used to estimate both permeability and solubility. While CLogP produced the best correlation to experimental values, even KLogP, the most simplified in silico method that is based on molecular formula with no knowledge of molecular structure, produced comparable BCS classification to the sophisticated methods. This KLogP, when combined with a mean melting point and estimated dose, can be used to provisionally classify potential drugs from just molecular formula, even before synthesis. 49-59% of the world's top-selling drugs are highly soluble (class 1 and class 3), and are therefore candidates for waivers of in vivo bioequivalence studies. For these drugs, the replacement of expensive human studies with affordable in vitro dissolution tests would ensure their bioequivalence, and encourage the development and availability of generic drug products in both industrial and developing countries.

Darcy Permeability of Hollow Fiber Bundles Used in Blood Oxygenation Devices

PubMed Central

Pacella, Heather E.; Eash, Heidi J.; Federspiel, William J.

2011-01-01

Many industrial and biomedical devices (e.g. blood oxygenators and artificial lungs) use bundles of hollow fiber membranes for separation processes. Analyses of flow and mass transport within the shell-side of the fiber bundles most often model the bundle for simplicity as a packed bed or porous media, using a Darcy permeability coefficient estimated from the Blake-Kozeny equation to account for viscous drag from the fibers. In this study, we developed a simple method for measuring the Darcy permeability of hollow fiber membrane bundles and evaluated how well the Blake-Kozeny (BK) equation predicted the Darcy permeability for these bundles. Fiber bundles were fabricated from commercially available Celgard® ×30-240 fiber fabric (300 μm outer diameter fibers @ 35 and 54 fibers/inch) and from a fiber fabric with 193 μm fibers (61 fibers/inch). The fiber bundles were mounted to the bottom of an acrylic tube and Darcy permeability was determined by measuring the elapsed time for a column of glycerol solution to flow through a fiber bundle. The ratio of the measured Darcy permeability to that predicted from the BK equation varied from 1.09 to 0.56. A comprehensive literature review suggested a modified BK equation with the “constant” correlated to porosity. This modification improved the predictions of the BK equation, with the ratio of measured to predicted permeability varying from 1.13 to 0.84. PMID:22927706

Fault-controlled permeability and fluid flow in low-porosity crystalline rocks: an example from naturally fractured geothermal systems in the Southern Andes

NASA Astrophysics Data System (ADS)

Arancibia, G.; Roquer, T.; Sepúlveda, J.; Veloso, E. A.; Morata, D.; Rowland, J. V.

2017-12-01

Fault zones can control the location, emplacement, and evolution of economic mineral deposits and geothermal systems by acting as barriers and/or conduits to crustal fluid flow (e.g. magma, gas, oil, hydro-geothermal and groundwater). The nature of the fault control permeability is critical in the case of fluid flow into low porosity/permeability crystalline rocks, since structural permeability provides the main hydraulic conductivity to generate a natural fractured system. However, several processes accompanying the failure of rocks (i.e. episodic permeability given by cycling ruptures, mineral precipitation from fluids in veins, dissolution of minerals in the vicinity of a fracture) promote a complex time-dependent and enhancing/reducing fault-controlled permeability. We propose the Southern Volcanic Zone (Southern Andes, Chile) as a case study to evaluate the role of the structural permeability in low porosity crystalline rocks belonging to the Miocene North Patagonian Batholith. Recently published studies propose a relatively well-constrained first-order role of two active fault systems, the arc-parallel (NS to NNE trending) Liquiñe Ofqui Fault System and the arc-oblique (NW trending) Andean Transverse Fault Zones, in fluid flow at crustal scales. We now propose to examine the Liquiñe ( 39°S) and Maihue ( 40°S) areas as sites of interaction between these fault systems, in order to evaluate a naturally fractured geothermal system. Preliminary results indicate upwelling of thermal water directly from fractured granite or from fluvial deposits overlying granitoids. Measured temperatures of thermal springs suggest a low- to medium-enthalpy system, which could potentially be harnessed for use in geothermal energy applications (e.g. heating, wood dryer and green house), which are much needed in Southern Chile. Future work will aim to examine the nature of structural permeability from the regional to the microscopic scale connecting the paleo- and current- fluid flow through the fractured media. Results will contribute to a better understanding of geothermal systems in the Andean tectonic setting and of naturally fractured reservoirs in low-porosity crystalline rocks around the world. Acknowledgments: This work is funded by CEGA-FONDAP/CONICYT #15090013 and VRI-PUENTE #P1703/2017.

The effect of stress on limestone permeability and its effective stress behavior

NASA Astrophysics Data System (ADS)

Meng, F.; Baud, P.; Ge, H.; Wong, T. F.

2017-12-01

The evolution of permeability and its effective stress behavior is related to inelastic deformation and failure mode. This was investigated in Indiana and Purbeck limestones with porosities of 18% and 13%, respectively. Hydrostatic and triaxial compression tests were conducted at room temperature on water-saturated samples at pore pressure of 5 MPa and confining pressures up to 90 MPa. Permeability was measured using steady flow at different stages of deformation. For Indiana limestone, under hydrostatic loading pore collapse initiated at critical pressure P* 55 MPa with an accelerated reduction of permeability by 1/2. At a confinement of 35 MPa and above, shear-enhanced compaction initiated at critical stress C*, beyond which permeability reduction up to a factor of 3 was observed. At a confinement of 15 MPa and below, dilatancy initiated at critical stress C', beyond which permeability continued to decrease, with a negative correlation between porosity and permeability changes. Purbeck limestone showed similar evolution of permeability. Microstructural and mercury porosimetry data showed that pore size distribution in both Indiana and Purbeck limestones is bimodal, with significant proportions of macropores and micropores. The effective stress behaviour of a limestone with dual porosity is different from the prediction for a microscopically homogeneous assemblage, in that its effective stress coefficients for permeability and porosity change may attain values significantly >1. Indeed this was confirmed by our measurements (at confining pressures of 7-15 MPa and pore pressures of 1-3 MPa) in samples that had not been deformed inelastically. We also investigated the behavior in samples hydrostatically and triaxially compacted to beyond the critical stresses P* and C*, respectively. Experimental data for these samples consistently showed effective stress coefficients for both permeability and porosity change with values <1. Thus the effective stress behavior in an inelastically compacted sample is fundamentally different, with attributes akin to that of a microscopically homogeneous assemblage. This is likely related to compaction from pervasive collapse of macropores, which would effectively homogenize the initially bimodal pore size distribution.

Application of carbonate cyclostratigraphy and borehole geophysics to delineate porosity and preferential flow in the karst limestone of the Biscayne aquifer, SE Florida

USGS Publications Warehouse

Cunningham, K.J.; Renken, R.A.; Wacker, M.A.; Zygnerski, M.R.; Robinson, E.; Shapiro, A.M.; Wingard, G.L.

2006-01-01

Combined analyses of cores, borehole geophysical logs, and cyclostratigraphy produced a new conceptual hydrogeologic framework for the triple-porosity (matrix, touching-vug, and conduit porosity) karst limestone of the Biscayne aquifer in a 0.65 km2 study area, SE Florida. Vertical lithofacies successions, which have recurrent stacking patterns, fit within high-frequency cycles. We define three ideal high-frequency cycles as: (1) upward-shallowing subtidal cycles, (2) upward-shallowing paralic cycles, and (3) aggradational subtidal cycles. Digital optical borehole images, tracers, and flow meters indicate that there is a predictable vertical pattern of porosity and permeability within the three ideal cycles, because the distribution of porosity and permeability is related to lithofacies. Stratiform zones of high permeability commonly occur just above flooding surfaces in the lower part of upward-shallowing subtidal and paralic cycles, forming preferential groundwater flow zones. Aggradational subtidal cycles are either mostly high-permeability zones or leaky, low-permeability units. In the study area, groundwater flow within stratiform high-permeability zones is through a secondary pore system of touching-vug porosity principally related to molds of burrows and pelecypods and to interburrow vugs. Movement of a dye-tracer pulse observed using a borehole fluid-temperature tool during a conservative tracer test indicates heterogeneous permeability. Advective movement of the tracer appears to be most concentrated within a thin stratiform flow zone contained within the lower part of a high-frequency cycle, indicating a distinctly high relative permeability for this zone. Borehole flow-meter measurements corroborate the relatively high permeability of the flow zone. Identification and mapping of such high-permeability flow zones is crucial to conceptualization of karst groundwater flow within a cyclostratigraphic framework. Many karst aquifers are included in cyclic platform carbonates. Clearly, a cyclostratigraphic approach that translates carbonate aquifer heterogeneity into a consistent framework of correlative units will improve simulation of karst groundwater flow. ?? 2006 Geological Society of America.

Stress concentrations at structural discontinuities in active fault zones in the western United States: Implications for permeability and fluid flow in geothermal fields

USGS Publications Warehouse

Siler, Drew; Hinz, Nicholas H.; Faulds, James E.

2018-01-01

Slip can induce concentration of stresses at discontinuities along fault systems. These structural discontinuities, i.e., fault terminations, fault step-overs, intersections, bends, and other fault interaction areas, are known to host fluid flow in ore deposition systems, oil and gas reservoirs, and geothermal systems. We modeled stress transfer associated with slip on faults with Holocene-to-historic slip histories at the Salt Wells and Bradys geothermal systems in western Nevada, United States. Results show discrete locations of stress perturbation within discontinuities along these fault systems. Well field data, surface geothermal manifestations, and subsurface temperature data, each a proxy for modern fluid circulation in the fields, indicate that geothermal fluid flow is focused in these same areas where stresses are most highly perturbed. These results suggest that submeter- to meter-scale slip on these fault systems generates stress perturbations that are sufficiently large to promote slip on an array of secondary structures spanning the footprint of the modern geothermal activity. Slip on these secondary faults and fractures generates permeability through kinematic deformation and allows for transmission of fluids. Still, mineralization is expected to seal permeability along faults and fractures over time scales that are generally shorter than either earthquake recurrence intervals or the estimated life span of geothermal fields. This suggests that though stress perturbations resulting from fault slip are broadly important for defining the location and spatial extent of enhanced permeability at structural discontinuities, continual generation and maintenance of flow conduits throughout these areas are probably dependent on the deformation mechanism(s) affecting individual structures.

Towards Practical Carbonation Prediction and Modelling for Service Life Design of Reinforced Concrete Structures

NASA Astrophysics Data System (ADS)

Ekolu, O. S.

2015-11-01

Amongst the scientific community, the interest in durability of concrete structures has been high for quite a long time of over 40 years. Of the various causes of degradation of concrete structures, corrosion is the most widespread durability problem and carbonation is one of the two causes of steel reinforcement corrosion. While much scientific understanding has been gained from the numerous carbonation studies undertaken over the past years, it is still presently not possible to accurately predict carbonation and apply it in design of structures. This underscores the complex nature of the mechanisms as influenced by several interactive factors. Based on critical literature and some experience of the author, it is found that there still exist major challenges in establishing a mathematical constitutive relation for realistic carbonation prediction. While most current models employ permeability /diffusion as the main model property, analysis shows that the most practical material property would be compressive strength, which has a low coefficient of variation of 20% compared to 30 to 50% for permeability. This important characteristic of compressive strength, combined with its merit of simplicity and data availability at all stages of a structure's life, promote its potential use in modelling over permeability. By using compressive strength in carbonation prediction, the need for accelerated testing and permeability measurement can be avoided. This paper attempts to examine the issues associated with carbonation prediction, which could underlie the current lack of a sound established prediction method. Suggestions are then made for possible employment of different or alternative approaches.

A PERMEABLE ACTIVE AMENDMENT CONCRETE (PAAC) FOR CONTAMINANT REMEDIATION AND EROSION CONTROL

DOE Office of Scientific and Technical Information (OSTI.GOV)

Knox, A.; Paller, M.; Dixon, K.

2012-06-29

The final project report for SEED SERDP ER - 2134 describes the development of permeable active amendment concrete (PAAC), which was evaluated through four tasks: 1) development of PAAC; 2) assessment of PAAC for contaminant removal; 3) evaluation of promising PAAC formulations for potential environmental impacts; and 4) assessment of the hydraulic, physical, and structural properties of PAAC. Conventional permeable concrete (often referred to as pervious concrete) is concrete with high porosity as a result of an extensive and interconnected void content. It is made from carefully controlled amounts of water and cementitious materials used to create a paste thatmore » forms a coating around aggregate particles. The mixture has a substantial void content (e.g., 15% - 25%) that results in a highly permeable structure that drains quickly. In PAAC, the aggregate material is partly replaced by chemically-active amendments that precipitate or adsorb contaminants in water that flows through the concrete interstices. PAAC combines the relatively high structural strength, ample void space, and water permeability of pervious concrete with the contaminant sequestration ability of chemically-active amendments to produce a new material with superior durability and ability to control contaminant mobility. The high surface area provided by the concrete interstices in PAAC provides significant opportunity for contaminants to react with the amendments incorporated into the concrete matrix. PAAC has the potential to immobilize a large variety of organic and inorganic contaminants by incorporating different active sequestering agents including phosphate materials (rock phosphate), organoclays, zeolite, and lime individually or in combinations.« less

High permeable microporous structured carbon counter electrode assisted by polystyrene sphere for fully printable perovskite solar cells

NASA Astrophysics Data System (ADS)

Tao, Haijun; Li, Yongtao; Zhang, Chuanxiang; Wang, Kang; Wang, Jiayue; Tan, Bin; Han, Linxuan; Tao, Jie

2018-03-01

The permeability of the carbon counter electrode (CCE) is critical to the HTM-free fully printable perovskite solar cells. In this work, we report a CCE assisted by polystyrene spheres (PS-spheres) as pore-forming agent to gain microporous structure for a better permeability. Due to its decomposition temperature at 400 °C, the porous structure is obtained in the carbon layer easily. By optimization towards the contents of PS-spheres in CCE, the filling rate of perovskite solution and the photovoltaic performance of the device have been significantly improved. Using this method, an average efficiency enhancement of 22% has been obtained for HTM-free fully printable perovskite solar cells, resulting in a better fill rate of CH3NH3PbI3 and an efficiency of 4.49%. This kind of CCE with the advantages of simple, easy preparation process and well performance, show excellent potential application in perovskite solar cells.

The casting of semi-permeable membranes in a microgravity environment

NASA Technical Reports Server (NTRS)

Vera, I.

1986-01-01

The experiment is to study polymeric membranes. Presently, semipermeable membranes are being manufactured from several different kinds of polymers all over the world and specific applications have been identified in fluid separation processes such as reverse osmosis, ultrafiltration and electrodialysis. Although, the ultrastructure of asymmetric and composite membranes have been under intensive study, still there are many questions about the factors affecting this structure and their degree of correlation. Nevertheless, there is indication that the entire morphological structure of polymeric membranes could be affected by the difference in specific gravity between the cast solution and the coagulation liquid normally used in the membranes preparation process. The casting of semipermeable membranes in space might help to identify the effect of gravity upon the structure of these membranes. It is important to recognize that the casting process involves changes of state and that in a microgravity environment, there will be a reduction on buoyancy-driven natural convection and density gradients.

Decision trees to characterise the roles of permeability and solubility on the prediction of oral absorption.

PubMed

Newby, Danielle; Freitas, Alex A; Ghafourian, Taravat

2015-01-27

Oral absorption of compounds depends on many physiological, physiochemical and formulation factors. Two important properties that govern oral absorption are in vitro permeability and solubility, which are commonly used as indicators of human intestinal absorption. Despite this, the nature and exact characteristics of the relationship between these parameters are not well understood. In this study a large dataset of human intestinal absorption was collated along with in vitro permeability, aqueous solubility, melting point, and maximum dose for the same compounds. The dataset allowed a permeability threshold to be established objectively to predict high or low intestinal absorption. Using this permeability threshold, classification decision trees incorporating a solubility-related parameter such as experimental or predicted solubility, or the melting point based absorption potential (MPbAP), along with structural molecular descriptors were developed and validated to predict oral absorption class. The decision trees were able to determine the individual roles of permeability and solubility in oral absorption process. Poorly permeable compounds with high solubility show low intestinal absorption, whereas poorly water soluble compounds with high or low permeability may have high intestinal absorption provided that they have certain molecular characteristics such as a small polar surface or specific topology. Copyright © 2015 Elsevier Masson SAS. All rights reserved.

Effect of Lactobacilli on Paracellular Permeability in the Gut

PubMed Central

Ahrne, Siv; Hagslatt, Marie-Louise Johansson

2011-01-01

Paracellular permeability is determined by the complex structures of junctions that are located between the epithelial cells. Already in 1996, it was shown that the human probiotic strain Lactobacillus plantarum 299v and the rat-originating strain Lactobacillus reuteri R2LC could reduce this permeability in a methotrexate-induced colitis model in the rat. Subsequently, many animal models and cell culture systems have shown indications that lactobacilli are able to counteract increased paracellular permeability evoked by cytokines, chemicals, infections, or stress. There have been few human studies focusing on the effect of lactobacilli on intestinal paracellular permeability but recently it has been shown that they could influence the tight junctions. More precisely, short-term administration of L. plantarum WCSF1 to healthy volunteers increased the relocation of occludin and ZO-1 into the tight junction area between duodenal epithelial cells. PMID:22254077

Octopus microvasculature: permeability to ferritin and carbon.

PubMed

Browning, J

1979-01-01

The permeability of Octopus microvasculature was investigated by intravascular injection of carbon and ferritin. Vessels were tight to carbon while ferritin penetrated the pericyte junction, and was found extravascularly 1-2 min after its introduction. Vesicles occurred rarely in pericytes; fenestrae were absent. The discontinuous endothelial layer did not consitute a permeability barrier. The basement membrane, although retarding the movement of ferritin, was permeable to it; carbon did not penetrate the basement membrane. Evidence indicated that ferritin, and thus similarly sized and smaller water soluble materials, traverse the pericyte junction as a result of bulk fluid flow. Comparisons are made with the convective (or junctional) and slower, diffusive (or vesicular) passage of materials known to occur across the endothelium of continuous capillaries in mammals. Previous macrophysiological determinations concerning the permeability of Octopus vessels are questioned in view of these findings. Possible reasons for some major structural differences in the microcirculatory systems of cephalopods and vertebrates are briefly discussed.

Effects of Ether vs. Ester Linkage on Lipid Bilayer Structure and Water Permeability

PubMed Central

Guler, S. Deren; Ghosh, D. Dipon; Pan, Jianjun; Matthai, John C.; Zeidel, Mark L.; Nagle, John F.; Tristram-Nagle, Stephanie

2009-01-01

The structure and water permeability of bilayers composed of the ether linked lipid, dihexadecylphosphatidylcholine (DHPC), were studied and compared with the ester linked lipid, dipalmitoylphosphaditdylcholine (DPPC). Wide angle x-ray scattering on oriented bilayers in the fluid phase indicate that the area per lipid A is slightly larger for DHPC than for DPPC. Low angle x-ray scattering yields A=65.1Å2 for DHPC at 48°C. LAXS data provide the bending modulus, KC=4.2×10−13erg, and the Hamaker parameter H=7.2×10−14erg for the van der Waals attractive interaction between neighboring bilayers. For the low temperature phases with ordered hydrocarbon chains, we confirm the transition from a tilted Lß’ gel phase to an untilted, interdigitated LßI phase as the sample hydrates at 20°C. Our measurement of water permeability, Pf=0.022 cm/s at 48 °C for fluid phase DHPC is slightly smaller than that of DPPC, (Pf=0.027 cm/s) at 50 °C, consistent with our triple slab theory of permeability. PMID:19416724

Assessment of Passive Intestinal Permeability Using an Artificial Membrane Insert System.

PubMed

Berben, Philippe; Brouwers, Joachim; Augustijns, Patrick

2018-01-01

Despite reasonable predictive power of current cell-based and cell-free absorption models for the assessment of intestinal drug permeability, high costs and lengthy preparation steps hamper their use. The use of a simple artificial membrane (without any lipids present) as intestinal barrier substitute would overcome these hurdles. In the present study, a set of 14 poorly water-soluble drugs, dissolved in 2 different media (fasted state simulated/human intestinal fluids [FaSSIF/FaHIF]), were applied to the donor compartment of an artificial membrane insert system (AMI-system) containing a regenerated cellulose membrane. Furthermore, to investigate the predictive capacity of the AMI-system as substitute for the well-established Caco-2 system to assess intestinal permeability, the same set of 14 drugs dissolved in FaHIF were applied to the donor compartment of a Caco-2 system. For 14 drugs, covering a broad range of physicochemical parameters, a reasonable correlation between both absorption systems was observed, characterized by a Pearson correlation coefficient r of 0.95 (FaHIF). Using the AMI-system, an excellent predictive capacity of FaSSIF as surrogate medium for FaHIF was demonstrated (r = 0.96). Based on the acquired data, the AMI-system appears to be a time- and cost-effective tool for the early-stage estimation of passive intestinal permeability for poorly water-soluble drugs. Copyright © 2018 American Pharmacists Association®. Published by Elsevier Inc. All rights reserved.

Understanding fluid transport through the multiscale pore network of a natural shale

NASA Astrophysics Data System (ADS)

Davy, Catherine; Adler, Pierre; Song, Yang; Nguyen, Thang Kim; Troadec, David; Dhénin, Jean-Francois

2017-04-01

Natural shales have a complex pore structure, which is only partly understood today. In the present contribution, a combination of different techniques is used to get information on three different scales. On each scale, the relevant flow equation is solved and provides input for the flow equation of the next higher scale. More precisely, micro-CT, FIB/SEM (Focused Ion Beam/Scanning Electron Microscopy) and TEM (Transmission Electron Microscopy) provide a full representative 3D pore space on the macroscopic scale, the mesoscale and the nanoscale. The corresponding typical voxel sizes are 0.7 μm, 10 nm and 1 nm, respectively. The porosity on the micro-CT images is 0.5 %, and it is not connected. One can distinguish between the pores, the porous clay matrix and non porous minerals; the volume percentages of these last two phases are 0.6 and 0.395, respectively. Samples of the porous clay matrix were analyzed by FIB/SEM which yields 3D information. They have a porosity ranging from 2 to 6 %. In some of them, the pore space is connected. Finally, TEM provides 2D images with a porosity of about 10 to 25 %. These information were used in the following way to estimate the macroscopic permeability which has been measured independently and found equal to 6 x10-20 m2. At the nanoscopic scale analyzed by 2D TEM, in the absence of 3D images, the pore structure is reconstructed by using a technique based on truncated Gaussian fields. Then, the Stokes equations are solved by using a 3D Lattice Boltzmann method. The resulting velocity field is averaged and this provides the permeability K_n. The permeability of the nanoscale structure varies between 0.7x 10-20 and 1.8x10-19 m2. As expected, the material is anisotropic. At the mesoscale, percolation of the FIB/SEM pore volume occurs only along a single direction. The Stokes equations are again solved by the same method and the mesoscopic permeability Km varies between 3.3 10-20 and 1.20 10-18 m2, depending on the nature of the percolating volume. The influence of the nanoscale porosity on the mesoscopic permeability is also studied. Two examples show that despite the scale ratio between the mesoscopic and nanoscopic pores, the nanoscopic pore structure cannot be neglected to estimate the permeability of the pore clay matrix. Finally, the sample provided by micro-CT is considered as a porous medium composed of three phases with permeabilities 0 (for the non porous minerals), 1 (for the porous clay matrix) and infinity (for the macroscopic pores). The overall permeability Kmacro is obtained by solving the Darcy's equation with a variable local permeability with spatially periodic boundary conditions. Kmacro is found of the order of 0.4 and the medium is relatively isotropic on this scale. This estimation of Kmacro is in agreement with the measured value.

The Evolution of Cracks in Maluanshan Granite Subjected to Different Temperature Processing

NASA Astrophysics Data System (ADS)

Jiang, Guanghui; Zuo, Jianping; Li, Liyun; Ma, Teng; Wei, Xu

2018-06-01

The understanding of the change in the physical and mechanical properties of rock before and after heating is of great significance for the site selection of mattamore and the exploitation of geothermal resources. It is known that before and after heating, the changes in wave velocity, wave velocity anisotropy and permeability of rock are due to the evolution of cracks in the rock. In this study, the wave velocity and permeability of granite specimen from the Maluanshan tunnel in Shenzhen, China, were measured after high-temperature processing at atmospheric pressure. The effects of temperature on the properties of rock based on the acoustics and permeability were measured and analyzed. The evolution of the cracks in Maluanshan granite was inverted through the change rule of the cracks, wave velocity anisotropy and permeability with temperature. The main conclusions were as follows: (1) Both granite P and S wave velocities decreased with the increasing temperature, and the thermal cracking occurred in four stages: between 50 and 250 °C, the crack stabilization development stage was in effect; between 250 and 300 °C, an accelerated development stage of the cracks existed; between 300 and 350 °C, a shift stage for the cracks was entered; and finally, from 350 to 700 °C, the cracks continued into a further development stage; (2) The coefficient of variation could be used to reflect the structural feature change of the rocks in the study of the wave velocity anisotropy. The structures of cracks were observed to change before and after 300 °C. (3) The Maluanshan granite permeability increases with the increasing processing temperature. It was observed that the higher the processing temperature, the larger the increase in the permeability rate. A porosity function was used as a variable to analyze the relationship between the porosity function and permeability as follows: from 50 to 200 °C, the permeability was determined by the microcracks; 200-400 °C was the transition stage; and between 400 and 700 °C, the permeability was determined by the macrocracks.

Finite Element Modeling of Transient Head Field Associated with Partially Penetrating, Slug Tests in a Heterogeneous Aquifer with Low Permeability, Stratigraphic Zones and Faults

NASA Astrophysics Data System (ADS)

Cheng, J.; Johnson, B.; Everett, M.

2003-12-01

Preliminary field work shows slug interference tests using an array of multilevel active and monitoring wells have potential of permitting enhanced aquifer characterization. Analysis of these test data, however, ultimately will rely on numerical geophysical inverse models. In order to gain insight as well as to provide synthetic data sets, we use a 3-D finite element analysis (code:FEHM-LANL) to explore the effect of idealized, low permeability, stratigraphical and structural (faults) heterogeneities on the transient head field associated with a slug test in a packer-isolated interval of an open borehole. The borehole and packers are modeled explicitly; wellbore storage is selected to match values of field tests. The homogeneous model exhibits excellent agreement with that of the semi-analytical model of Liu and Butler (1995). Models are axisymmetric with a centrally located slugged interval within a homogenous, isotropic, confined aquifer with embedded, horizontal or vertical zones of lower permeability that represent low permeability strata or faults, respectively. Either one or two horizontal layers are located opposite the borehole packers, which is a common situation at the field site; layer thickness (0.15-0.75 m), permeability contrast (up to 4 orders of magnitude contrast) and lateral continuity of layers are varied between models. The effect of a "hole" in a layer also is assessed. Fault models explore effects of thickness (0.05-0.75 m) and permeability contrast as well as additional effects associated with the offset of low permeability strata. Results of models are represented most clearly by contour maps of time of arrival and normalized amplitude of peak head perturbation, but transient head histories at selected locations provide additional insight. Synthesis of the models is on-going but a few points can be made at present. Spatial patterns are distinctive and allow easy discrimination between stratigraphic and structural impedance features. Time delays and amplitude reduction increase nonlinearly with increasing permeability contrast. The capacity to discriminate the effect of layer thickness decreases as permeability contrast increases.

Analysis and application of classification methods of complex carbonate reservoirs

NASA Astrophysics Data System (ADS)

Li, Xiongyan; Qin, Ruibao; Ping, Haitao; Wei, Dan; Liu, Xiaomei

2018-06-01

There are abundant carbonate reservoirs from the Cenozoic to Mesozoic era in the Middle East. Due to variation in sedimentary environment and diagenetic process of carbonate reservoirs, several porosity types coexist in carbonate reservoirs. As a result, because of the complex lithologies and pore types as well as the impact of microfractures, the pore structure is very complicated. Therefore, it is difficult to accurately calculate the reservoir parameters. In order to accurately evaluate carbonate reservoirs, based on the pore structure evaluation of carbonate reservoirs, the classification methods of carbonate reservoirs are analyzed based on capillary pressure curves and flow units. Based on the capillary pressure curves, although the carbonate reservoirs can be classified, the relationship between porosity and permeability after classification is not ideal. On the basis of the flow units, the high-precision functional relationship between porosity and permeability after classification can be established. Therefore, the carbonate reservoirs can be quantitatively evaluated based on the classification of flow units. In the dolomite reservoirs, the average absolute error of calculated permeability decreases from 15.13 to 7.44 mD. Similarly, the average absolute error of calculated permeability of limestone reservoirs is reduced from 20.33 to 7.37 mD. Only by accurately characterizing pore structures and classifying reservoir types, reservoir parameters could be calculated accurately. Therefore, characterizing pore structures and classifying reservoir types are very important to accurate evaluation of complex carbonate reservoirs in the Middle East.

Mapping Metals Incorporation of a Whole Single Catalyst Particle Using Element Specific X-ray Nanotomography

DOE PAGES

Meirer, Florian; Morris, Darius T.; Kalirai, Sam; ...

2015-01-02

Full-field transmission X-ray microscopy has been used to determine the 3D structure of a whole individual fluid catalytic cracking (FCC) particle at high spatial resolution and in a fast, noninvasive manner, maintaining the full integrity of the particle. Using X-ray absorption mosaic imaging to combine multiple fields of view, computed tomography was performed to visualize the macropore structure of the catalyst and its availability for mass transport. We mapped the relative spatial distributions of Ni and Fe using multiple-energy tomography at the respective X-ray absorption K-edges and correlated these distributions with porosity and permeability of an equilibrated catalyst (E-cat) particle.more » Both metals were found to accumulate in outer layers of the particle, effectively decreasing porosity by clogging of pores and eventually restricting access into the FCC particle.« less

Experimental methods and transport models for drug delivery across the blood-brain barrier.

PubMed

Fu, Bingmei M

2012-06-01

The blood-brain barrier (BBB) is a dynamic barrier essential for maintaining the micro-environment of the brain. Although the special anatomical features of the BBB determine its protective role for the central nervous system (CNS) from blood-born neurotoxins, however, the BBB extremely limits the therapeutic efficacy of drugs into the CNS, which greatly hinders the treatment of major brain diseases. This review summarized the unique structures of the BBB, described a variety of in vivo and in vitro experimental methods for determining the transport properties of the BBB, e.g., the permeability of the BBB to water, ions, and solutes including nutrients, therapeutic agents and drug carriers, and presented newly developed mathematical models which quantitatively correlate the anatomical structures of the BBB with its barrier functions. Finally, on the basis of the experimental observations and the quantitative models, several strategies for drug delivery through the BBB were proposed.

Experimental Methods and Transport Models for Drug Delivery across the Blood-Brain Barrier

PubMed Central

Fu, Bingmei M

2017-01-01

The blood-brain barrier (BBB) is a dynamic barrier essential for maintaining the micro-environment of the brain. Although the special anatomical features of the BBB determine its protective role for the central nervous system (CNS) from blood-born neurotoxins, however, the BBB extremely limits the therapeutic efficacy of drugs into the CNS, which greatly hinders the treatment of major brain diseases. This review summarized the unique structures of the BBB, described a variety of in vivo and in vitro experimental methods for determining the transport properties of the BBB, e.g., the permeability of the BBB to water, ions, and solutes including nutrients, therapeutic agents and drug carriers, and presented newly developed mathematical models which quantitatively correlate the anatomical structures of the BBB with its barrier functions. Finally, on the basis of the experimental observations and the quantitative models, several strategies for drug delivery through the BBB were proposed. PMID:22201587

The hydraulic structure of the Gole Larghe Fault Zone (Italian Southern Alps) through the seismic cycle

NASA Astrophysics Data System (ADS)

Bistacchi, A.; Mittempergher, S.; Di Toro, G.; Smith, S. A. F.; Garofalo, P. S.

2017-12-01

The 600 m-thick, strike slip Gole Larghe Fault Zone (GLFZ) experienced several hundred seismic slip events at c. 8 km depth, well-documented by numerous pseudotachylytes, was then exhumed and is now exposed in beautiful and very continuous outcrops. The fault zone was also characterized by hydrous fluid flow during the seismic cycle, demonstrated by alteration halos and precipitation of hydrothermal minerals in veins and cataclasites. We have characterized the GLFZ with > 2 km of scanlines and semi-automatic mapping of faults and fractures on several photogrammetric 3D Digital Outcrop Models (3D DOMs). This allowed us obtaining 3D Discrete Fracture Network (DFN) models, based on robust probability density functions for parameters of fault and fracture sets, and simulating the fault zone hydraulic properties. In addition, the correlation between evidences of fluid flow and the fault/fracture network parameters have been studied with a geostatistical approach, allowing generating more realistic time-varying permeability models of the fault zone. Based on this dataset, we have developed a FEM hydraulic model of the GLFZ for a period of some tens of years, covering one seismic event and a postseismic period. The higher permeability is attained in the syn- to early post-seismic period, when fractures are (re)opened by off-fault deformation, then permeability decreases in the postseismic due to fracture sealing. The flow model yields a flow pattern consistent with the observed alteration/mineralization pattern and a marked channelling of fluid flow in the inner part of the fault zone, due to permeability anisotropy related to the spatial arrangement of different fracture sets. Amongst possible seismological applications of our study, we will discuss the possibility to evaluate the coseismic fracture intensity due to off-fault damage, and the heterogeneity and evolution of mechanical parameters due to fluid-rock interaction.

Diffusion coefficient of alginate microcapsules used in pancreatic islet transplantation, a method to cure type 1 diabetes

NASA Astrophysics Data System (ADS)

Najdahmadi, Avid; Lakey, Jonathan R. T.; Botvinick, Elliot

2018-02-01

Pancreatic islet transplantation is a promising approach of providing insulin in type 1 diabetes. One strategy to protect islets from the host immune system is encapsulation within a porous biocompatible alginate membrane. This encapsulation provides mechanical support to the cells and allows selective diffusion of oxygen, nutrients and insulin while blocking immunoglobulins. These hydrogels form by diffusion of calcium ions into the polymer network and therefore they are highly sensitive to environmental changes and fluctuations in temperature. We investigated the effects of gel concentration, crosslinking time and ambient conditions on material permeability, volume, and rigidity, all of which may change the immunoisolating characteristics of alginate. To measure diffusion coefficient as a method to capture structural changes we studied the diffusion of fluorescently tagged dextrans of different molecular weight into the midplane of alginate microcapsules, the diffusion coefficient is then calculated by fitting observed fluorescence dynamics to the mathematical solution of 1-D diffusion into a sphere. These measurements were performed after incubation in different conditions as well as after an in vivo experiment in six immunocompetent mice for seven days. Additionally, the changes in gel volume after incubation at different temperatures and environmental conditions as well as changes in compression modulus of alginate gels during crosslinking were investigated. Our result show that increase of polymer concentration and crosslinking time leads to a decrease in volume and increase in compression modulus. Furthermore, we found that samples crosslinked and placed in physiological environment, experience an increase in volume. As expected, these volume changes affect diffusion rates of fluorescent dextrans, where volume expansion is correlated with higher calculated diffusion coefficient. This observation is critical to islet protection since higher permeability due to the expansion in vivo may lead to increased permeability to immunoglobulins. Capsules from the in vivo study showed similar volume expansion and increased permeability, indicating our in vitro assay is a good predictor of volume change in vivo.

Measuring accessibility of sustainable transportation using space syntax in Bojonggede area

NASA Astrophysics Data System (ADS)

Suryawinata, B. A.; Mariana, Y.; Wijaksono, S.

2017-12-01

Changes in the physical structure of regional space as a result of the increase of planned and unplanned settlements in the Bojonggede area have an impact on the road network pattern system. Changes in road network patterns will have an impact on the permeability of the area. Permeability measures the extent to which road network patterns provide an option in traveling. If the permeability increases the travel distance decreases and the route of travel choice increases, permeability like this can create an easy access system and physically integrated. This study aims to identify the relationship of physical characteristics of residential area and road network pattern to the level of space permeability in Bojonggede area. By conducting this research can be a reference for the arrangement of circulation, accessibility, and land use in the vicinity of Bojonggede. This research uses quantitative method and space syntax method to see global integration and local integration on the region which become the parameter of permeability level. The results showed that the level of permeability globally and locally high in Bojonggede physical area is the physical characteristics of the area that has a grid pattern of road network grid.

Morphological Characterization of Silicone Hydrogels

NASA Astrophysics Data System (ADS)

Gido, Samuel

2007-03-01

Silicone hydrogel materials are used in the latest generation of extended wear soft contact lenses. To ensure comfort and eye health, these materials must simultaneously exhibit high oxygen permeability and high water permeability / hydrophilicity. The materials achieve these opposing requirements based on bicontinuous composite of nanoscale domains of oxygen permeable (silicones) and hydrophilic (water soluble polymer) materials. The microphase separated morphology of silicone hydrogel contact lens materials was imaged using field emission gun scanning transmission electron microscopy (FEGSTEM), and atomic force microscopy (AFM). Additional morphological information was provided by small angle X-ray scattering (SAXS). These results all indicate a nanophase separated structure of silicone rich (oxygen permeable) and carbon rich (water soluble polymer) domains separated on a length scale of about 10 nm.

Facies-controlled fluid migration patterns and subsequent reservoir collapse by depressurization - the Entrada Sandstone, Utah

NASA Astrophysics Data System (ADS)

Sundal, A.; Skurtveit, E.; Midtkandal, I.; Hope, I.; Larsen, E.; Kristensen, R. S.; Braathen, A.

2016-12-01

The thick and laterally extensive Middle Jurassic Entrada Sandstone forms a regionally significant reservoir both in the subsurface and as outcrops in Utah. Individual layers of fluvial sandstone within otherwise fine-grained aeolian dunes and silty inter-dune deposits of the Entrada Earthy Member are of particular interest as CO2 reservoir analogs to study injectivity, reservoir-caprock interaction and bypass systems. Detailed mapping of facies and deformation structures, including petrographic studies and core plug tests, show significant rock property contrasts between layers of different sedimentary facies. Beds representing fluvial facies appear as white, medium-grained, well-sorted and cross-stratified sandstone, displaying high porosity, high micro-scale permeability, low tensile strength, and low seismic velocity. Subsequent to deposition, these beds were structurally deformed and contain a dense network of deformation bands, especially in proximity to faults and injectites. Over- and underlying low-permeability layers of inter-dune aeolian facies contain none or few deformation bands, display significantly higher rock strengths and high seismic velocities compared to the fluvial inter-beds. Permeable units between low-permeability layers are prone to become over-pressured during burial, and the establishment of fluid escape routes during regional tectonic events may have caused depressurization and selective collapse of weak layers. Through-cutting, vertical sand pipes display large clasts of stratified sandstone suspended in remobilized sand matrix, and may have served as permeable fluid conduits and pressure vents before becoming preferentially cemented and plugged. Bleached zones around faults and fractures throughout the succession indicate leakage and migration of reducing fluids. The fluvial beds are porous and would appear in wireline logs and seismic profiles as excellent reservoirs; whereas due to dense populations of deformation bands they may in fact display reduced horizontal and vertical permeability locally. Facies-related differences in geomechanical properties, pressure distribution and selective structural collapse have significant implications for injectivity and reservoir behavior.

Activated carbon fiber composite material and method of making

DOEpatents

Burchell, Timothy D.; Weaver, Charles E.; Chilcoat, Bill R.; Derbyshire, Frank; Jagtoyen, Marit

2000-01-01

An activated carbon fiber composite for separation and purification, or catalytic processing of fluids is described. The activated composite comprises carbon fibers rigidly bonded to form an open, permeable, rigid monolith capable of being formed to near-net-shape. Separation and purification of gases are effected by means of a controlled pore structure that is developed in the carbon fibers contained in the composite. The open, permeable structure allows the free flow of gases through the monolith accompanied by high rates of adsorption. By modification of the pore structure and bulk density the composite can be rendered suitable for applications such as gas storage, catalysis, and liquid phase processing.

Activated carbon fiber composite material and method of making

DOEpatents

Burchell, Timothy D.; Weaver, Charles E.; Chilcoat, Bill R.; Derbyshire, Frank; Jagtoyen, Marit

2001-01-01

An activated carbon fiber composite for separation and purification, or catalytic processing of fluids is described. The activated composite comprises carbon fibers rigidly bonded to form an open, permeable, rigid monolith capable of being formed to near-net-shape. Separation and purification of gases are effected by means of a controlled pore structure that is developed in the carbon fibers contained in the composite. The open, permeable structure allows the free flow of gases through the monolith accompanied by high rates of adsorption. By modification of the pore structure and bulk density the composite can be rendered suitable for applications such as gas storage, catalysis, and liquid phase processing.

Fault Damage Zone Permeability in Crystalline Rocks from Combined Field and Laboratory Measurements

NASA Astrophysics Data System (ADS)

Mitchell, T.; Faulkner, D.

2008-12-01

In nature, permeability is enhanced in the damage zone of faults, where fracturing occurs on a wide range of scales. Here we analyze the contribution of microfracture damage on the permeability of faults that cut through low porosity, crystalline rocks by combining field and laboratory measurements. Microfracture densities surrounding strike-slip faults with well-constrained displacements ranging over 3 orders of magnitude (~0.12 m - 5000 m) have been analyzed. The faults studied are excellently exposed within the Atacama Fault Zone, where exhumation from 6-10 km has occurred. Microfractures in the form of fluid inclusion planes (FIPs) show a log-linear decrease in fracture density with perpendicular distance from the fault core. Damage zone widths defined by the density of FIPs scale with fault displacement, and an empirical relationship for microfracture density distribution throughout the damage zone with displacement is derived. Damage zone rocks will have experienced differential stresses that were less than, but some proportion of, the failure stress. As such, permeability data from progressively loaded, initially intact laboratory samples, in the pre-failure region provide useful insights into fluid flow properties of various parts of the damage zone. The permeability evolution of initially intact crystalline rocks under increasing differential load leading to macroscopic failure was determined at water pore pressures of 50 MPa and effective pressure of 10 MPa. Permeability is seen to increase by up to, and over, two orders of magnitude prior to macroscopic failure. Further experiments were stopped at various points in the loading history in order to correlate microfracture density within the samples with permeability. By combining empirical relationships determined from both quantitative fieldwork and experiments we present a model that allows microfracture permeability distribution throughout the damage zone to be determined as function of increasing fault displacement.

Rectification properties and Ca2+ permeability of glutamate receptor channels in hippocampal cells.

PubMed

Lerma, J; Morales, M; Ibarz, J M; Somohano, F

1994-07-01

Excitatory amino acids exert a depolarizing action on central nervous system cells through an increase in cationic conductances. Non-NMDA receptors have been considered to be selectively permeable to Na+ and K+, while Ca2+ influx has been thought to occur through the NMDA receptor subtype. Recently, however, the expression of cloned non-NMDA receptor subunits has shown that alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors are permeable to Ca2+ whenever the receptor lacks a particular subunit (edited GluR-B). The behaviour of recombinant glutamate receptor channels predicts that Ca2+ would only permeate through receptors that show strong inward rectification and vice versa, i.e. AMPA receptors with linear current-voltage relationships would be impermeable to Ca2+. Using the whole-cell configuration of the patch-clamp technique, we have studied the Ca2+ permeability and the rectifying properties of AMPA receptors, when activated by kainate, in hippocampal neurons kept in culture or acutely dissociated from differentiated hippocampus. Cells were classified according to whether they showed outward rectifying (type I), inward rectifying (type II) or almost linear (type III) current-voltage relationships for kainate-activated responses. AMPA receptors of type I cells (52.2%) were mostly Ca(2+)-impermeable (PCa/PCs = 0.1), while type II cells (6.5%) expressed Ca(2+)-permeable receptors (PCa/PCs = 0.9). Type III cells (41.3%) showed responses with low but not negligible Ca2+ permeability (PCa/PCs = 0.18). The degree of Ca2+ permeability and inward rectification were well correlated in cultured cells, i.e. more inward rectification corresponded to higher Ca2+ permeability.(ABSTRACT TRUNCATED AT 250 WORDS)

Identification of Reversible Disruption of the Human Blood-Brain Barrier Following Acute Ischemia.

PubMed

Simpkins, Alexis N; Dias, Christian; Leigh, Richard

2016-09-01

Animal models of acute cerebral ischemia have demonstrated that diffuse blood-brain barrier (BBB) disruption can be reversible after early reperfusion. However, irreversible, focal BBB disruption in humans is associated with hemorrhagic transformation in patients receiving intravenous thrombolytic therapy. The goal of this study was to use a magnetic resonance imaging biomarker of BBB permeability to differentiate these 2 forms of BBB disruption. Acute stroke patients imaged with magnetic resonance imaging before, 2 hours after, and 24 hours after treatment with intravenous tissue-type plasminogen activator were included. The average BBB permeability of the acute ischemic region before and 2 hours after treatment was calculated using a T2* perfusion-weighted source images. Change in average permeability was compared with percent reperfusion using linear regression. Focal regions of maximal BBB permeability from the pretreatment magnetic resonance imaging were compared with the occurrence of parenchymal hematoma (PH) formation on the 24-hour magnetic resonance imaging scan using logistic regression. Signals indicating reversible BBB permeability were detected in 18/36 patients. Change in average BBB permeability correlated inversely with percent reperfusion (P=0.006), indicating that early reperfusion is associated with decreased BBB permeability, whereas sustained ischemia is associated with increased BBB disruption. Focal regions of maximal BBB permeability were significantly associated with subsequent formation of PH (P=0.013). This study demonstrates that diffuse, mild BBB disruption in the acutely ischemic human brain is reversible with reperfusion. This study also confirms prior findings that focal severe BBB disruption confers an increased risk of hemorrhagic transformation in patients treated with intravenous tissue-type plasminogen activator. © 2016 American Heart Association, Inc.

Evaluation of capillary permeability and microcirculation in patients with chronic venous hypertension treated with venoruton by the vacuum suction chamber (VSC) device and laser-Doppler flowmetry.

PubMed

Belcaro, G; D'Aulerio, A; Rulo, A; Candiani, C

1988-01-01

A new system to study capillary permeability, the VSC (vacuum suction chamber) device has been developed to evaluate the variations of capillary permeability in postphlebitic limbs. The VSC device produces by negative pressure [obtained in a plastic chamber applied to the skin at the perimalleolar region] a wheal which disappears in normals in less than one hour. In twelve patients with moderate [superficial] venous hypertension and in twelve patients with postphlebitic limbs the time of disappearance of the wheals was significantly longer in comparison with ten normal limbs. There was also a significantly increased time of disappearance of the wheals in postphlebitic legs in comparison with those with superficial incompetence. The validation of the VSC technique with venous occlusion plethysmography (VOP) showed that the increase of time of disappearance of the wheals is well correlated with the increase of capillary permeability demonstrated by VOP. After 2 weeks treatment with Venoruton (at the dosage of 1000 mg t.i.d.) the time of disappearance of the wheal was significantly reduced in both groups of patients (while it was unchanged in normals). Laser-Doppler parameters used together with the VSC device to evaluate the microcirculatory changes associated with an altered capillary permeability also showed a significant improvement of the laser-Doppler parameters after treatment. In conclusion there is evidence by the VSC device that capillary permeability [which is abnormally increased] in chronic venous hypertension is improved [decreased] after treatment for two weeks with Venoruton. This study demonstrated also the efficacy of the VSC device to study capillary permeability and the effects of drugs active on capillary permeability.

Influence of a high-fat diet on gut microbiota, intestinal permeability and metabolic endotoxaemia.

PubMed

Moreira, Ana Paula Boroni; Texeira, Tatiana Fiche Salles; Ferreira, Alessandra Barbosa; Peluzio, Maria do Carmo Gouveia; Alfenas, Rita de Cássia Gonçalves

2012-09-01

Lipopolysaccharide (LPS) may play an important role in chronic diseases through the activation of inflammatory responses. The type of diet consumed is of major concern for the prevention and treatment of these diseases. Evidence from animal and human studies has shown that LPS can diffuse from the gut to the circulatory system in response to the intake of high amounts of fat. The method by which LPS move into the circulatory system is either through direct diffusion due to intestinal paracellular permeability or through absorption by enterocytes during chylomicron secretion. Considering the impact of metabolic diseases on public health and the association between these diseases and the levels of LPS in the circulatory system, this review will mainly discuss the current knowledge about high-fat diets and subclinical inflammation. It will also describe the new evidence that correlates gut microbiota, intestinal permeability and alkaline phosphatase activity with increased blood LPS levels and the biological effects of this increase, such as insulin resistance. Although the majority of the studies published so far have assessed the effects of dietary fat, additional studies are necessary to deepen the understanding of how the amount, the quality and the structure of the fat may affect endotoxaemia. The potential of food combinations to reduce the negative effects of fat intake should also be considered in future studies. In these studies, the effects of flavonoids, prebiotics and probiotics on endotoxaemia should be investigated. Thus, it is essential to identify dietetic strategies capable of minimising endotoxaemia and its postprandial inflammatory effects.

Role of vascular endothelial cell growth factor in Ovarian Hyperstimulation Syndrome.

PubMed Central

Levin, E R; Rosen, G F; Cassidenti, D L; Yee, B; Meldrum, D; Wisot, A; Pedram, A

1998-01-01

Controlled ovarian hyperstimulation with gonadotropins is followed by Ovarian Hyperstimulation Syndrome (OHSS) in some women. An unidentified capillary permeability factor from the ovary has been implicated, and vascular endothelial cell growth/permeability factor (VEGF) is a candidate protein. Follicular fluids (FF) from 80 women who received hormonal induction for infertility were studied. FFs were grouped according to oocyte production, from group I (0-7 oocytes) through group IV (23-31 oocytes). Group IV was comprised of four women with the most severe symptoms of OHSS. Endothelial cell (EC) permeability induced by the individual FF was highly correlated to oocytes produced (r2 = 0.73, P < 0.001). Group IV FF stimulated a 63+/-4% greater permeability than FF from group I patients (P < 0. 01), reversed 98% by anti-VEGF antibody. Group IV fluids contained the VEGF165 isoform and significantly greater concentrations of VEGF as compared with group I (1,105+/-87 pg/ml vs. 353+/-28 pg/ml, P < 0. 05). Significant cytoskeletal rearrangement of F-actin into stress fibers and a destruction of ZO-1 tight junction protein alignment was caused by group IV FF, mediated in part by nitric oxide. These mechanisms, which lead to increased EC permeability, were reversed by the VEGF antibody. Our results indicate that VEGF is the FF factor responsible for increased vascular permeability, thereby contributing to the pathogenesis of OHSS. PMID:9835623

Fracture size and transmissivity correlations: Implications for transport simulations in sparse three-dimensional discrete fracture networks following a truncated power law distribution of fracture size

NASA Astrophysics Data System (ADS)

Hyman, J.; Aldrich, G. A.; Viswanathan, H. S.; Makedonska, N.; Karra, S.

2016-12-01

We characterize how different fracture size-transmissivity relationships influence flow and transport simulations through sparse three-dimensional discrete fracture networks. Although it is generally accepted that there is a positive correlation between a fracture's size and its transmissivity/aperture, the functional form of that relationship remains a matter of debate. Relationships that assume perfect correlation, semi-correlation, and non-correlation between the two have been proposed. To study the impact that adopting one of these relationships has on transport properties, we generate multiple sparse fracture networks composed of circular fractures whose radii follow a truncated power law distribution. The distribution of transmissivities are selected so that the mean transmissivity of the fracture networks are the same and the distributions of aperture and transmissivity in models that include a stochastic term are also the same.We observe that adopting a correlation between a fracture size and its transmissivity leads to earlier breakthrough times and higher effective permeability when compared to networks where no correlation is used. While fracture network geometry plays the principal role in determining where transport occurs within the network, the relationship between size and transmissivity controls the flow speed. These observations indicate DFN modelers should be aware that breakthrough times and effective permeabilities can be strongly influenced by such a relationship in addition to fracture and network statistics.

Scale effect and value criterion of the permeability of the interlayer staggered zones in the basalt of Jinsha River basin, China

NASA Astrophysics Data System (ADS)

Zhou, Zhifang; Lin, Mu; Guo, Qiaona; Chen, Meng

2018-05-01

The hydrogeological characteristics of structural planes are different to those of the associated bedrock. The permeability, and therefore hydraulic conductivity (K), of a structural plane can be significantly different at different scales. The interlayer staggered zones in the Emeishan Basalt of early Late Permian were studied; this formation is located in the Baihetan hydropower project area in Jinsha River Basin, China. The seepage flow distribution of a solid model and two generalized models (A and B) were computed using COMSOL. The K values of the interlayer staggered zones for all three models were calculated by both simulation and analytical methods. The results show that the calculated K results of the generalized models can reflect the variation trend of permeability in each section of the solid model, and the approximate analytical calculation of K can be taken into account in the calculation of K in the generalized models instead of that found by simulation. Further studies are needed to investigate permeability variation in the interlayer staggered zones under the condition of different scales, considering the scaling variation in each section of an interlayer staggered zone. The permeability of each section of an interlayer staggered zone presents a certain degree of dispersivity at small scales; however, the permeability values tends to converge to a similar value as the scale of each section increases. The regularity of each section of the interlayer staggered zones under the condition of different scales can provide a scientific basis for reasonable selection of different engineering options.

Water and solute permeability of rat lung caveolae: high permeabilities explained by acyl chain unsaturation.

PubMed

Hill, Warren G; Almasri, Eyad; Ruiz, W Giovanni; Apodaca, Gerard; Zeidel, Mark L

2005-07-01

Caveolae are invaginated membrane structures with high levels of cholesterol, sphingomyelin, and caveolin protein that are predicted to exist as liquid-ordered domains with low water permeability. We isolated a caveolae-enriched membrane fraction without detergents from rat lung and characterized its permeability properties to nonelectrolytes and protons. Membrane permeability to water was 2.85 +/- 0.41 x 10(-3) cm/s, a value 5-10 times higher than expected based on comparisons with other cholesterol and sphingolipid-enriched membranes. Permeabilities to urea, ammonia, and protons were measured and found to be moderately high for urea and ammonia at 8.85 +/- 2.40 x 10(-7)and 6.84 +/- 1.03 x 10(-2) respectively and high for protons at 8.84 +/- 3.06 x 10(-2) cm/s. To examine whether caveolin or other integral membrane proteins were responsible for high permeabilities, liposomes designed to mimic the lipids of the inner and outer leaflets of the caveolar membrane were made. Osmotic water permeability to both liposome compositions were determined and a combined inner/outer leaflet water permeability was calculated and found to be close to that of native caveolae at 1.58 +/- 1.1 x 10(-3) cm/s. In caveolae, activation energy for water flux was high (19.4 kcal/mol) and water permeability was not inhibited by HgCl2; however, aquaporin 1 was detectable by immunoblotting. Immunostaining of rat lung with AQP1 and caveolin antisera revealed very low levels of colocalization. We conclude that aquaporin water channels do not contribute significantly to the observed water flux and that caveolae have relatively high water and solute permeabilities due to the high degree of unsaturation in their fatty acyl chains.

Improving packaged food quality and safety. Part 1: synchrotron X-ray analysis.

PubMed

López-Rubio, A; Hernandez-Muñoz, P; Catala, R; Gavara, R; Lagarón, J M

2005-10-01

The objective was to demonstrate, as an example of an application, the potential of synchrotron X-ray analysis to detect morphological alterations that can occur in barrier packaging materials and structures. These changes can affect the packaging barrier characteristics when conventional food preservation treatments are applied to packaged food. The paper presents the results of a number of experiments where time-resolved combined wide-angle X-ray scattering and small-angle X-ray scattering analysis as a function of temperature and humidity were applied to ethylene-vinyl alcohol co-polymers (EVOH), polypropylene (PP)/EVOH/PP structures, aliphatic polyketone terpolymer (PK) and amorphous polyamide (aPA) materials. A comparison between conventional retorting and high-pressure processing treatments in terms of morphologic alterations are also presented for EVOH. The impact of retorting on the EVOH structure contrasts with the good behaviour of the PK during this treatment and with that of aPA. However, no significant structural changes were observed by wide-angle X-ray scattering in the EVOH structures after high-pressure processing treatment. These structural observations have also been correlated with oxygen permeability measurements that are of importance when guaranteeing the intended levels of safety and quality of packaged food.

The influence of spreading rate, basement composition, fluid chemistry and chimney morphology on the formation of gold-rich SMS deposits at slow and ultraslow mid-ocean ridges

NASA Astrophysics Data System (ADS)

Knight, Robert D.; Roberts, Stephen; Webber, Alexander P.

2018-01-01

Seafloor massive sulphide (SMS) deposits are variably enriched in precious metals including gold. However, the processes invoked to explain the formation of auriferous deposits do not typically apply to mid-ocean ridge settings. Here, we show a statistically significant, negative correlation between the average gold concentration of SMS deposits with spreading rate, at non-sedimented mid-ocean ridges. Deposits located at slow spreading ridges (20-40 mm/a) have average gold concentrations of between 850 and 1600 ppb; however, with increasing spreading rate (up to 140 mm/a), gold concentrations gradually decrease to between 50 and 150 ppb. This correlation of gold content with spreading rate may be controlled by the degree and duration of fluid-rock interaction, which is a function of the heat flux, crustal structure (faulting) and the permeability of the source rocks. Deposits at ultraslow ridges, including ultramafic-hosted deposits, are particularly enriched in gold. This is attributed to the higher permeability of the ultramafic source rocks achieved by serpentinisation and the inherent porosity of serpentine minerals, combined with relatively high gold concentrations in peridotite compared with mid-ocean ridge basalt. Variations in fluid chemistry, such as reducing conditions and the potential for increased sulphur availability at ultramafic-hosted sites, may also contribute to the high concentrations observed. Beehive chimneys, which offer more favourable conditions for gold precipitation, may be more prevalent at ultramafic-hosted sites due to diffuse low-velocity venting compared with more focussed venting at basalt-hosted sites.

Predicting Air Permeability of Handloom Fabrics: A Comparative Analysis of Regression and Artificial Neural Network Models

NASA Astrophysics Data System (ADS)

Mitra, Ashis; Majumdar, Prabal Kumar; Bannerjee, Debamalya

2013-03-01

This paper presents a comparative analysis of two modeling methodologies for the prediction of air permeability of plain woven handloom cotton fabrics. Four basic fabric constructional parameters namely ends per inch, picks per inch, warp count and weft count have been used as inputs for artificial neural network (ANN) and regression models. Out of the four regression models tried, interaction model showed very good prediction performance with a meager mean absolute error of 2.017 %. However, ANN models demonstrated superiority over the regression models both in terms of correlation coefficient and mean absolute error. The ANN model with 10 nodes in the single hidden layer showed very good correlation coefficient of 0.982 and 0.929 and mean absolute error of only 0.923 and 2.043 % for training and testing data respectively.

Laboratory test investigations on soil water characteristic curve and air permeability of municipal solid waste.

PubMed

Shi, Jianyong; Wu, Xun; Ai, Yingbo; Zhang, Zhen

2018-05-01

The air permeability coefficient has a high correlation with the water content of municipal solid waste. In this study, continuous drying methodology using a tension meter was employed to construct the soil water characteristic curve of municipal solid waste (M-SWCC). The municipal solid waste air permeability test was conducted by a newly designed apparatus. The measured M-SWCC was well reproduced by the van Genuchten (V-G) model and was used to predict the parameters of typical points in M-SWCC, including saturated water content, field capacity, residual water content and water content at the inflection point. It was found that the M-SWCC was significantly influenced by void ratio. The final evaporation and test period of M-SWCC increase with the increase in void ratio of municipal solid waste. The evolution of air permeability coefficient with water content of municipal solid waste depicted three distinct characteristic stages. It was observed that the water contents that corresponded to the two cut-off points of the three stages were residual water content and water content at the inflection point, respectively. The air permeability coefficient of municipal solid waste decreased with the increase of the water content from zero to the residual water content. The air permeability coefficient was almost invariable when the water content increased from residual water content to the water content at the inflection point. When the water content of municipal solid waste exceeded the water content at the inflection point, the air permeability coefficient sharply decreased with the increase of water content.

Using soft computing techniques to predict corrected air permeability using Thomeer parameters, air porosity and grain density

NASA Astrophysics Data System (ADS)

Nooruddin, Hasan A.; Anifowose, Fatai; Abdulraheem, Abdulazeez

2014-03-01

Soft computing techniques are recently becoming very popular in the oil industry. A number of computational intelligence-based predictive methods have been widely applied in the industry with high prediction capabilities. Some of the popular methods include feed-forward neural networks, radial basis function network, generalized regression neural network, functional networks, support vector regression and adaptive network fuzzy inference system. A comparative study among most popular soft computing techniques is presented using a large dataset published in literature describing multimodal pore systems in the Arab D formation. The inputs to the models are air porosity, grain density, and Thomeer parameters obtained using mercury injection capillary pressure profiles. Corrected air permeability is the target variable. Applying developed permeability models in recent reservoir characterization workflow ensures consistency between micro and macro scale information represented mainly by Thomeer parameters and absolute permeability. The dataset was divided into two parts with 80% of data used for training and 20% for testing. The target permeability variable was transformed to the logarithmic scale as a pre-processing step and to show better correlations with the input variables. Statistical and graphical analysis of the results including permeability cross-plots and detailed error measures were created. In general, the comparative study showed very close results among the developed models. The feed-forward neural network permeability model showed the lowest average relative error, average absolute relative error, standard deviations of error and root means squares making it the best model for such problems. Adaptive network fuzzy inference system also showed very good results.

The role of mitosis in LDL transport through cultured endothelial cell monolayers.

PubMed

Cancel, Limary M; Tarbell, John M

2011-03-01

We (7) have previously shown that leaky junctions associated with dying or dividing cells are the dominant pathway for LDL transport under convective conditions, accounting for >90% of the transport. We (8) have also recently shown that the permeability of bovine aortic endothelial cell monolayers is highly correlated with their rate of apoptosis and that inhibiting apoptosis lowers the permeability of the monolayers to LDL. To explore the role of mitosis in the leaky junction pathway, the microtubule-stabilizing agent paclitaxel was used to alter the rate of mitosis, and LDL flux and water flux (J(v)) were measured. Control monolayers had an average mitosis rate of 0.029%. Treatment with paclitaxel (2.5 μM) for 1.5, 3, 4.5, or 6 h yielded increasing rates of mitosis ranging from 0.099% to 1.03%. The convective permeability of LDL (P(e)) increased up to fivefold, whereas J(v) increased up to threefold, over this range of mitosis rates. We found strong correlations between the mitosis rate and both P(e) and J(v). However, compared with our previous apoptosis study (8), we found that mitosis was only half as effective as apoptosis in increasing P(e). The results led us to conclude that while mitosis-related leaky junctions might play a role in the initial infiltration of LDL into the artery wall, the progression of atherosclerosis might be more closely correlated with apoptosis-related leaky junctions.

Deregulation of levels of angiopoietin-1 and angiopoietin-2 is associated with severe courses of hantavirus infection.

PubMed

Nusshag, Christian; Osberghaus, Anja; Baumann, Alexandra; Schnitzler, Paul; Zeier, Martin; Krautkrämer, Ellen

2017-09-01

Hantavirus disease is characterized by endothelial dysfunction. Angiopoietin-1 (Ang-1) and its antagonist angiopoietin-2 (Ang-2) play a key role in the control of capillary permeability. Ang-1 is responsible for maintenance of cell-to-cell contacts whereas Ang-2 destabilizes monolayers. An imbalance of Ang-1 and Ang-2 levels results in enhanced permeability and capillary leakage. To analyze the involvement of angiopoietins in hantavirus-induced disruption of endothelia, we measured the levels of Ang-1 and Ang-2 in hantavirus infection. Levels of angiopoietins of 31 patients with acute Puumala virus (PUUV) infection and a patient infected with Dobrava-Belgrade virus genotype Sochi (DOBV-Sochi) were analyzed. An age-matched group of 16 healthy volunteers served as control. The ratios of Ang-2 to Ang-1 levels were calculated and correlated with laboratory parameters. Patients with PUUV and DOBV-Sochi infection exhibited elevated ratios of Ang-2/Ang-1 compared to the control group. The imbalance of Ang-2 to Ang-1 levels was observed early after onset of symptoms and lasted for the acute phase of infection. The deregulation in DOBV-Sochi infection was more prominent than in PUUV infection. Analysis of Ang-2/Ang-1 ratio and laboratory parameters in the PUUV cohort revealed a positive correlation with serum creatinine and a negative correlation with serum albumin and thrombocyte levels. We observed an imbalance between levels of Ang-1 and Ang-2 in patients infected with PUUV and DOBV-Sochi. Elevated Ang-2/Ang-1 ratios correlate with disease severity. The virus-induced deregulation of angiopoietin levels may enhance capillary permeability and contribute to the pathogenesis of hantavirus disease. Copyright © 2017 Elsevier B.V. All rights reserved.

Structure of the cell envelope of corynebacteria: importance of the non-covalently bound lipids in the formation of the cell wall permeability barrier and fracture plane.

PubMed

Puech, V; Chami, M; Lemassu, A; Lanéelle, M A; Schiffler, B; Gounon, P; Bayan, N; Benz, R; Daffé, M

2001-05-01

With the recent success of the heterologous expression of mycobacterial antigens in corynebacteria, in addition to the importance of these bacteria in biotechnology and medicine, a better understanding of the structure of their cell envelopes was needed. A combination of molecular compositional analysis, ultrastructural appearance and freeze-etch electron microscopy study was used to arrive at a chemical model, unique to corynebacteria but consistent with their phylogenetic relatedness to mycobacteria and other members of the distinctive suprageneric actinomycete taxon. Transmission electron microscopy and chemical analyses showed that the cell envelopes of the representative strains of corynebacteria examined consisted of (i) an outer layer composed of polysaccharides (primarily a high-molecular-mass glucan and arabinomannans), proteins, which include the mycoloyltransferase PS1, and lipids; (ii) a cell wall glycan core of peptidoglycan-arabinogalactan which may contain other sugar residues and was usually esterified by corynomycolic acids; and (iii) a typical plasma membrane bilayer. Freeze-etch electron microscopy showed that most corynomycolate-containing strains exhibited a main fracture plane in their cell wall and contained low-molecular-mass porins, while the fracture occurred within the plasma membrane of strains devoid of both corynomycolate and pore-forming proteins. Importantly, in most strains, the amount of cell wall-linked corynomycolates was not sufficient to cover the bacterial surface; interestingly, the occurrence of a cell wall fracture plane correlated with the amount of non-covalently bound lipids of the strains. Furthermore, these lipids were shown to spontaneously form liposomes, indicating that they may participate in a bilayer structure. Altogether, the data suggested that the cell wall permeability barrier in corynebacteria involved both covalently linked corynomycolates and non-covalently bound lipids of their cell envelopes.

The permeability of fault zones in the upper continental crust: statistical analysis from 460 datasets, updated depth-trends, and permeability contrasts between fault damage zones and protoliths.

NASA Astrophysics Data System (ADS)

Scibek, J.; Gleeson, T. P.; Ingebritsen, S.; McKenzie, J. M.

2017-12-01

Fault zones are an important part of the hydraulic structure of the Earth's crust and influence a wide range of Earth processes and a large amount of test data has been collected over the years. We conducted a meta-analysis of global of fault zone permeabilities in the upper brittle continental crust, using about 10,000 published research items from a variety of geoscience and engineering disciplines. Using 460 datasets at 340 localities, the in-situ bulk permeabilities (>10's meters scale, including macro-fractures) and matrix permeabilities (drilled core samples or outcrop spot tests) are separated, analyzed, and compared. The values have log-normal distributions and we analyze the log-permeability values. In the fault damage zones of plutonic and metamorphic rocks the mean bulk permeability was 1x10-14m2, compared to matrix mean of 1x10-16m2. In sedimentary siliciclastic rocks the mean value was the same for bulk and matrix permeability (4x10-14m2). More useful insights were determined from the regression analysis of paired permeability data at all sites (fault damage zone vs. protolith). Much of the variation in fault permeability is explained by the permeability of protolith: in relatively weak volcaniclastic and clay-rich rocks up to 70 to 88% of the variation is explained, and only 20-30% in plutonic and metamorphic rocks. We propose a revision at shallow depths for previously published upper-bound curves for the "fault-damaged crust " and the geothermal-metamorphic rock assemblage outside of major fault zones. Although the bounding curves describe the "fault-damaged crust" permeability parameter space adequately, the only statistically significant permeability-depth trend is for plutonic and metamorphic rocks (50% of variation explained). We find a depth-dependent systematic variation of the permeability ratio (fault damage zone / protolith) from the in-situ bulk permeability global data. A moving average of the log-permeability ratio value is 2 to 2.5 (global mean is 2.2). Although the data is unevenly distributed with depth, the present evidence is that the permeability ratio is at a maximum at depths 1 to 2 kilometers, decreases with depth below 2km, and is also lower near the ground surface.

The Application of Fractal and Multifractal Theory in Hydraulic-Flow-Unit Characterization and Permeability Estimation

NASA Astrophysics Data System (ADS)

Chen, X.; Yao, G.; Cai, J.

2017-12-01

Pore structure characteristics are important factors in influencing the fluid transport behavior of porous media, such as pore-throat ratio, pore connectivity and size distribution, moreover, wettability. To accurately characterize the diversity of pore structure among HFUs, five samples selected from different HFUs (porosities are approximately equal, however permeability varies widely) were chosen to conduct micro-computerized tomography test to acquire direct 3D images of pore geometries and to perform mercury injection experiments to obtain the pore volume-radii distribution. To characterize complex and high nonlinear pore structure of all samples, three classic fractal geometry models were applied. Results showed that each HFU has similar box-counting fractal dimension and generalized fractal dimension in the number-area model, but there are significant differences in multifractal spectrums. In the radius-volume model, there are three obvious linear segments, corresponding to three fractal dimension values, and the middle one is proved as the actual fractal dimension according to the maximum radius. In the number-radius model, the spherical-pore size distribution extracted by maximum ball algorithm exist a decrease in the number of small pores compared with the fractal power rate rather than the traditional linear law. Among the three models, only multifractal analysis can classify the HFUs accurately. Additionally, due to the tightness and low-permeability in reservoir rocks, connate water film existing in the inner surface of pore channels commonly forms bound water. The conventional model which is known as Yu-Cheng's model has been proved to be typically not applicable. Considering the effect of irreducible water saturation, an improved fractal permeability model was also deduced theoretically. The comparison results showed that the improved model can be applied to calculate permeability directly and accurately in such unconventional rocks.

Pore-Scale Simulation and Sensitivity Analysis of Apparent Gas Permeability in Shale Matrix

PubMed Central

Zhang, Pengwei; Hu, Liming; Meegoda, Jay N.

2017-01-01

Extremely low permeability due to nano-scale pores is a distinctive feature of gas transport in a shale matrix. The permeability of shale depends on pore pressure, porosity, pore throat size and gas type. The pore network model is a practical way to explain the macro flow behavior of porous media from a microscopic point of view. In this research, gas flow in a shale matrix is simulated using a previously developed three-dimensional pore network model that includes typical bimodal pore size distribution, anisotropy and low connectivity of the pore structure in shale. The apparent gas permeability of shale matrix was calculated under different reservoir pressures corresponding to different gas exploitation stages. Results indicate that gas permeability is strongly related to reservoir gas pressure, and hence the apparent permeability is not a unique value during the shale gas exploitation, and simulations suggested that a constant permeability for continuum-scale simulation is not accurate. Hence, the reservoir pressures of different shale gas exploitations should be considered. In addition, a sensitivity analysis was also performed to determine the contributions to apparent permeability of a shale matrix from petro-physical properties of shale such as pore throat size and porosity. Finally, the impact of connectivity of nano-scale pores on shale gas flux was analyzed. These results would provide an insight into understanding nano/micro scale flows of shale gas in the shale matrix. PMID:28772465

Pore-Scale Simulation and Sensitivity Analysis of Apparent Gas Permeability in Shale Matrix.

PubMed

Zhang, Pengwei; Hu, Liming; Meegoda, Jay N

2017-01-25

Extremely low permeability due to nano-scale pores is a distinctive feature of gas transport in a shale matrix. The permeability of shale depends on pore pressure, porosity, pore throat size and gas type. The pore network model is a practical way to explain the macro flow behavior of porous media from a microscopic point of view. In this research, gas flow in a shale matrix is simulated using a previously developed three-dimensional pore network model that includes typical bimodal pore size distribution, anisotropy and low connectivity of the pore structure in shale. The apparent gas permeability of shale matrix was calculated under different reservoir pressures corresponding to different gas exploitation stages. Results indicate that gas permeability is strongly related to reservoir gas pressure, and hence the apparent permeability is not a unique value during the shale gas exploitation, and simulations suggested that a constant permeability for continuum-scale simulation is not accurate. Hence, the reservoir pressures of different shale gas exploitations should be considered. In addition, a sensitivity analysis was also performed to determine the contributions to apparent permeability of a shale matrix from petro-physical properties of shale such as pore throat size and porosity. Finally, the impact of connectivity of nano-scale pores on shale gas flux was analyzed. These results would provide an insight into understanding nano/micro scale flows of shale gas in the shale matrix.

Structural control on geothermal circulation in the Tocomar geothermal volcanic area (Puna plateau, Argentina)

NASA Astrophysics Data System (ADS)

Giordano, Guido

2016-04-01

The reconstruction of the stratigraphical-structural framework and the hydrogeology of geothermal areas is fundamental for understanding the relationships between cap rocks, reservoir and circulation of geothermal fluids and for planning the exploitation of the field. The Tocomar geothermal volcanic area (Puna plateau, Central Andes, NW Argentina) has a high geothermal potential. It is crossed by the active NW-SE trans-Andean tectonic lineament known as the Calama-Olacapato-Toro (COT) fault system, which favours a high secondary permeability testified by the presence of numerous thermal springs. This study presents new stratigraphic, structural, volcanological, geochemical and hydrogeological data on the geothermal field. Our data suggest that the main geothermal reservoir is located within or below the Pre-Palaeozoic-Ordovician basement units, characterised by unevenly distributed secondary permeability. The reservoir is recharged by infiltration in the ridges above 4500 m a.s.l., where basement rocks are in outcrop. Below 4500 m a.s.l., the reservoir is covered by the low permeable Miocene-Quaternary units that allow a poor circulation of shallow groundwater. Geothermal fluids upwell in areas with more intense fracturing, especially where main regional structures, particularly NW-SE COT-parallel lineaments, intersect with secondary structures, such as at the Tocomar field.

Whole lesion histogram analysis of meningiomas derived from ADC values. Correlation with several cellularity parameters, proliferation index KI 67, nucleic content, and membrane permeability.

PubMed

Surov, Alexey; Hamerla, Gordian; Meyer, Hans Jonas; Winter, Karsten; Schob, Stefan; Fiedler, Eckhard

2018-09-01

To analyze several histopathological features and their possible correlations with whole lesion histogram analysis derived from ADC maps in meningioma. The retrospective study involved 36 patients with primary meningiomas. For every tumor, the following histogram analysis parameters of apparent diffusion coefficient (ADC) were calculated: ADC mean , ADC max , ADC min , ADC median , ADC mode , ADC percentiles: P10, P25, P75, P90, as well kurtosis, skewness, and entropy. All measures were performed by two radiologists. Proliferation index KI 67, minimal, maximal and mean cell count, total nucleic area, and expression of water channel aquaporin 4 (AQP4) were estimated. Spearman's correlation coefficient was used to analyze associations between investigated parameters. A perfect interobserver agreement for all ADC values (0.84-0.97) was identified. All ADC values correlated inversely with tumor cellularity with the strongest correlation between P10, P25 and mean cell count (-0.558). KI 67 correlated inversely with all ADC values except ADC min . ADC parameters did not correlate with total nucleic area. All ADC values correlated statistically significant with expression of AQP4. ADC histogram analysis is a valid method with an excellent interobserver agreement. Cellularity parameters and proliferation potential are associated with different ADC values. Membrane permeability may play a greater role for water diffusion than cell count and proliferation activity. Copyright © 2018 Elsevier Inc. All rights reserved.

Development and Differentiation of Mesenchymal Bone Marrow Cells in Porous Permeable Titanium Nickelide Implants In Vitro and In Vivo.

PubMed

Kokorev, O V; Khodorenko, V N; Radkevich, A A; Dambaev, G Ts; Gunter, V E

2016-08-01

We studied the structure of porous permeable titanium nickelide used as the scaffold. In vitro population of the porous scaffold with multipotent mesenchymal stem bone marrow cells on days 7, 14, 21, and 28 was analyzed by scanning electron microscopy. Stage-by-stage histogenesis of the tissues formed from the bone marrow cells in the titanium nickelide scaffold in vivo is described in detail. Using mesenchymal stem cells, we demonstrated that porous permeable titanium nickelide scaffolds are unique incubators for cell cultures applicable for tissue engineering.

The application and limitations of mathematical modelling in the prediction of permeability across mammalian skin and polydimethylsiloxane membranes.

PubMed

Moss, Gary P; Sun, Yi; Wilkinson, Simon C; Davey, Neil; Adams, Rod; Martin, Gary P; Prapopopolou, M; Brown, Marc B

2011-11-01

Predicting the rate of percutaneous absorption of a drug is an important issue with the increasing use of the skin as a means of moderating and controlling drug delivery. One key feature of this problem domain is that human skin permeability (as K(p)) has been shown to be inherently non-linear when mathematically related to the physicochemical parameters of penetrants. As such, the aims of this study were to apply and evaluate Gaussian process (GP) regression methods to datasets for membranes other than human skin, and to explore how the nature of the dataset may influence its analysis. Permeability data for absorption across rodent and pig skin, and artificial membranes (polydimethylsiloxane, PDMS, i.e. Silastic) membranes was collected from the literature. Two quantitative structure-permeability relationship (QSPR) models were used to compare with the GP models. Further performance metrics were computed in terms of all predictions, and a range of covariance functions were examined: the squared exponential (SE), neural network (NNone) and rational quadratic (QR) covariance functions, along with two simple cases of Matern covariance function (Matern3 and Matern5) where the polynomial order is set to 1 and 2, respectively. As measures of performance, the correlation coefficient (CORR), negative log estimated predictive density (NLL, or negative log loss) and mean squared error (MSE) were employed. The results demonstrated that GP models with different covariance functions outperform QSPR models for human, pig and rodent datasets. For the artificial membranes, GPs perform better in one instance, and give similar results in other experiments (where different covariance parameters produce similar results). In some cases, the GP predictions for some of the artificial membrane dataset are poorly correlated, suggesting that the physicochemical parameters employed in this study might not be appropriate for developing models that represent this membrane. While the results of this study indicate that permeation across rodent (mouse and rat) and pig skin is, in a statistical sense, similar, and that the artificial membranes are poor replacements of human or animal skin, the overriding issue raised in this study is the nature of the dataset and how it can influence the results, and subsequent interpretation, of any model produced for particular membranes. The size of the datasets, in both absolute and comparative senses, appears to influence model quality. Ideally, to generate viable cross-comparisons the datasets for different mammalian membranes should, wherever possible, exhibit as much commonality as possible. © 2011 The Authors. JPP © 2011 Royal Pharmaceutical Society.

Numerical modeling of flow and transport in the far-field of a generic nuclear waste repository in fractured crystalline rock using updated fracture continuum model

NASA Astrophysics Data System (ADS)

Hadgu, T.; Kalinina, E.; Klise, K. A.; Wang, Y.

2016-12-01

Disposal of high-level radioactive waste in a deep geological repository in crystalline host rock is one of the potential options for long term isolation. Characterization of the natural barrier system is an important component of the disposal option. In this study we present numerical modeling of flow and transport in fractured crystalline rock using an updated fracture continuum model (FCM). The FCM is a stochastic method that maps the permeability of discrete fractures onto a regular grid. The original method by McKenna and Reeves (2005) has been updated to provide capabilities that enhance representation of fractured rock. As reported in Hadgu et al. (2015) the method was first modified to include fully three-dimensional representations of anisotropic permeability, multiple independent fracture sets, and arbitrary fracture dips and orientations, and spatial correlation. More recently the FCM has been extended to include three different methods. (1) The Sequential Gaussian Simulation (SGSIM) method uses spatial correlation to generate fractures and define their properties for FCM (2) The ELLIPSIM method randomly generates a specified number of ellipses with properties defined by probability distributions. Each ellipse represents a single fracture. (3) Direct conversion of discrete fracture network (DFN) output. Test simulations were conducted to simulate flow and transport using ELLIPSIM and direct conversion of DFN methods. The simulations used a 1 km x 1km x 1km model domain and a structured with grid block of size of 10 m x 10m x 10m, resulting in a total of 106 grid blocks. Distributions of fracture parameters were used to generate a selected number of realizations. For each realization, the different methods were applied to generate representative permeability fields. The PFLOTRAN (Hammond et al., 2014) code was used to simulate flow and transport in the domain. Simulation results and analysis are presented. The results indicate that the FCM approach is a viable method to model fractured crystalline rocks. The FCM is a computationally efficient way to generate realistic representation of complex fracture systems. This approach is of interest for nuclear waste disposal models applied over large domains. SAND2016-7509 A

Analytical Expressions for Thermo-Osmotic Permeability of Clays

NASA Astrophysics Data System (ADS)

Gonçalvès, J.; Ji Yu, C.; Matray, J.-M.; Tremosa, J.

2018-01-01

In this study, a new formulation for the thermo-osmotic permeability of natural pore solutions containing monovalent and divalent cations is proposed. The mathematical formulation proposed here is based on the theoretical framework supporting thermo-osmosis which relies on water structure alteration in the pore space of surface-charged materials caused by solid-fluid electrochemical interactions. The ionic content balancing the surface charge of clay minerals causes a disruption in the hydrogen bond network when more structured water is present at the clay surface. Analytical expressions based on our heuristic model are proposed and compared to the available data for NaCl solutions. It is shown that the introduction of divalent cations reduces the thermo-osmotic permeability by one third compared to the monovalent case. The analytical expressions provided here can be used to advantage for safety calculations in deep underground nuclear waste repositories.

Correlation of Gas Permeability in a Metal-Organic Framework MIL-101(Cr)–Polysulfone Mixed-Matrix Membrane with Free Volume Measurements by Positron Annihilation Lifetime Spectroscopy (PALS)

PubMed Central

Jeazet, Harold B. Tanh; Koschine, Tönjes; Staudt, Claudia; Raetzke, Klaus; Janiak, Christoph

2013-01-01

Hydrothermally stable particles of the metal-organic framework MIL-101(Cr) were incorporated into a polysulfone (PSF) matrix to produce mixed-matrix or composite membranes with excellent dispersion of MIL-101 particles and good adhesion within the polymer matrix. Pure gas (O2, N2, CO2 and CH4) permeation tests showed a significant increase of gas permeabilities of the mixed-matrix membranes without any loss in selectivity. Positron annihilation lifetime spectroscopy (PALS) indicated that the increased gas permeability is due to the free volume in the PSF polymer and the added large free volume inside the MIL-101 particles. The trend of the gas transport properties of the composite membranes could be reproduced by a Maxwell model. PMID:24957061

Fault geometry and fluid-rock reaction: Combined controls on mineralization in the Xinli gold deposit, Jiaodong Peninsula, China

NASA Astrophysics Data System (ADS)

Yang, Lin; Zhao, Rui; Wang, Qingfei; Liu, Xuefei; Carranza, Emmanuel John M.

2018-06-01

The structures and fluid-rock reaction in the Xinli gold deposit, Jiaodong Peninsula, were investigated to further understand their combined controls on the development of permeability associated with ore-forming fluid migration. Orebodies in this deposit are hosted by the moderately SE-to S-dipping Sanshandao-Cangshang fault (SCF). Variations in both dip direction and dip angle along the SCF plane produced fault bends, which controlled the fluid accumulation and ore-shoot formation. Gold mineralizations occurred in early gold-quartz-pyrite and late gold-quartz-polymetallic sulphide stages following pervasive sericitization and silicification alterations. Theoretical calculation indicates that sericitization caused 8-57% volume decrease resulting in the development/enlargement of voids, further increase of grain-scale permeability, and resultant precipitation of the early gold-quartz-pyrite pods, which destroyed permeability. The rock softening produced by alterations promoted activities of SCF secondary faults and formation of new fractures, which rebuilt the permeability and controlled the late gold-quartz-polymetallic sulfide veins. Quantitative studies on permeability distributions show that the southwestern and northeastern bend areas with similar alteration and mineralization have persistent and anti-persistent permeability networks, respectively. These were likely caused by different processes of rebuilding permeability due to different stress states resulting from changes in fault geometry.

Quantifying the clay content with borehole depth and impact on reservoir flow

NASA Astrophysics Data System (ADS)

Sarath Kumar, Aaraellu D.; Chattopadhyay, Pallavi B.

2017-04-01

This study focuses on the application of reservoir well log data and 3D transient numerical model for proper optimization of flow dynamics and hydrocarbon potential. Fluid flow through porous media depends on clay content that controls porosity, permeability and pore pressure. The pressure dependence of permeability is more pronounced in tight formations. Therefore, preliminary clay concentration analysis and geo-mechanical characterizations have been done by using wells logs. The assumption of a constant permeability for a reservoir is inappropriate and therefore the study deals with impact of permeability variation for pressure-sensitive formation. The study started with obtaining field data from available well logs. Then, the mathematical models are developed to understand the efficient extraction of oil in terms of reservoir architecture, porosity and permeability. The fluid flow simulations have been done using COMSOL Multiphysics Software by choosing time dependent subsurface flow module that is governed by Darcy's law. This study suggests that the reservoir should not be treated as a single homogeneous structure with unique porosity and permeability. The reservoir parameters change with varying clay content and it should be considered for effective planning and extraction of oil. There is an optimum drawdown for maximum production with varying permeability in a reservoir.

Left-handed transmission in a simple cut-wire pair structure

NASA Astrophysics Data System (ADS)

Tung, Nguyen Thanh; Thuy, Vu Tran Thanh; Park, Jin Woo; Rhee, Joo Yull; Lee, YoungPak

2010-01-01

It is well known that, together with the plasma behavior of continuous wires, the use of cut-wire pair as a metamagnetic component is to drive the negative permeability in the left-handed combined structure. In this study, we have investigated a strange left-handed transmission in a metamaterial consisting of only conventional cut-wire pair structure without additional adjustment. It is shown that the observed left-handed behavior, which occurs at a frequency three times higher than that for the combined structure, originates from the fundamental negative permittivity provided by the symmetric resonant mode and a negative permeability by the third-order asymmetric resonance. Our results would simplify extremely the fabricating procedure, especially, for terahertz regime as well as reveal many possibilities to design optical devices based on the electromagnetic responses of cut-wire structure.

An Analytical Solution and Numerical Modeling Study of Gas Hydrate Saturation Effects on Porosity and Permeability of Porous Media

NASA Astrophysics Data System (ADS)

Zerpa, L.; Gao, F.; Wang, S.

2017-12-01

There are two major types of natural gas hydrate distributions in porous media: pore filling and contact cementing. The difference between these two distribution types is related to hydrate nucleation and growth processes. In the pore filling distribution, hydrate nucleates from a gas-dissolved aqueous phase at the grain boundary and grows away from grain contacts and surfaces into the pore space. In the contact cementing distribution, hydrate nucleates and grows at the gas-water interface and at intergranular contacts. Previous attempts to correlate changes on porosity and permeability during hydrate formation/dissociation were based on the length difference between the pore body and pore throat, and only considered contact cementing hydrate distribution. This work consists of a study of mathematical models of permeability and porosity as a function of gas hydrate saturation during formation and dissociation of gas hydrates in porous media. In this work, first we derive the permeability equation for the pore filling hydrate deposition as a function of hydrate saturation. Then, a more comprehensive model considering both types of gas hydrate deposition is developed to represent changes in permeability and porosity during hydrate formation and dissociation. This resulted in a model that combines pore filling and contact cementing deposition types in the same reservoir. Finally, the TOUGH+Hydrate numerical reservoir simulator was modified to include these models to analyze the response of production and saturation during a depressurization process, considering different combinations of pore filling and contact cementing hydrate distributions. The empirical exponent used in the permeability adjustment factor model influences both production profile and saturation results. This empirical factor describes the permeability dependence to changes in porosity caused by solid phase formation in the porous medium. The use of the permeability exponent decreases the permeability of the system for a given hydrate saturation, which affects the hydraulic performance of the system. However, from published experimental work, there is only a rough estimation of this permeability exponent. This factor could be represented with an empirical equation if more laboratory and field data becomes available.

pH-dependent stability of creatine ethyl ester: relevance to oral absorption.

PubMed

Gufford, Brandon T; Ezell, Edward L; Robinson, Dennis H; Miller, Donald W; Miller, Nicholas J; Gu, Xiaochen; Vennerstrom, Jonathan L

2013-09-01

Creatine ethyl ester hydrochloride (CEE) was synthesized as a prodrug of creatine (CRT) to improve aqueous solubility, gastrointestinal permeability, and ultimately the pharmacodynamics of CRT. We used high-performance liquid chromatography (HPLC) and proton nuclear magnetic resonance (NMR) to characterize the pH-dependent stability of CEE in aqueous solution and compared the permeability of CEE to CRT and creatinine (CRN) across Caco-2 human epithelial cell monolayers and transdermal permeability across porcine skin. CEE was most stable in a strongly acidic condition (half-life = 570 hours at pH 1.0) where it undergoes ester hydrolysis to CRT and ethanol. At pH ≥ 1.0, CEE cyclizes to CRN with the logarithm of the first order rate constant increasing linearly with pH. Above pH 8.0 (half-life = 23 sec) the rate of degradation was too rapid to be determined. The rate of degradation of CEE in cell culture media and simulated intestinal fluid (SIF) was a function of pH and correlated well with the stability in aqueous buffered solutions. The permeability of CEE across Caco-2 monolayers and porcine skin was significantly greater than that of CRT or CRN. The stability of CEE in acidic media together with its improved permeability suggests that CEE has potential for improved oral absorption compared to CRT.

Quantitative prediction of ionization effect on human skin permeability.

PubMed

Baba, Hiromi; Ueno, Yusuke; Hashida, Mitsuru; Yamashita, Fumiyoshi

2017-04-30

Although skin permeability of an active ingredient can be severely affected by its ionization in a dose solution, most of the existing prediction models cannot predict such impacts. To provide reliable predictors, we curated a novel large dataset of in vitro human skin permeability coefficients for 322 entries comprising chemically diverse permeants whose ionization fractions can be calculated. Subsequently, we generated thousands of computational descriptors, including LogD (octanol-water distribution coefficient at a specific pH), and analyzed the dataset using nonlinear support vector regression (SVR) and Gaussian process regression (GPR) combined with greedy descriptor selection. The SVR model was slightly superior to the GPR model, with externally validated squared correlation coefficient, root mean square error, and mean absolute error values of 0.94, 0.29, and 0.21, respectively. These models indicate that Log D is effective for a comprehensive prediction of ionization effects on skin permeability. In addition, the proposed models satisfied the statistical criteria endorsed in recent model validation studies. These models can evaluate virtually generated compounds at any pH; therefore, they can be used for high-throughput evaluations of numerous active ingredients and optimization of their skin permeability with respect to permeant ionization. Copyright © 2017 Elsevier B.V. All rights reserved.

Quantification of Tumor Vascular Permeability and Blood Volume by Positron Emission Tomography

PubMed Central

Chen, Haojun; Tong, Xiao; Lang, Lixin; Jacobson, Orit; Yung, Bryant C.; Yang, Xiangyu; Bai, Ruiliang; Kiesewetter, Dale O.; Ma, Ying; Wu, Hua; Niu, Gang; Chen, Xiaoyuan

2017-01-01

Purpose: Evans Blue (EB) is an azo dye that binds quantitatively with serum albumin. With an albumin binding, NOTA conjugated truncated Evan's blue (NEB) dye derived PET tracer, we aimed to establish a strategy for evaluating vascular permeability in malignant tumors via non-invasive PET. Experimental design: Sixty-minute dynamic PET using [18F]FAl-NEB was performed in three xenograft tumor models including INS-1 rat insulinoma, UM-SCC-22B human head and neck carcinoma and U-87 MG human glioblastoma. Tumor vascular permeability was quantified by the difference of the slopes between tumor and blood time-activity curve (TACs, expressed as Ps). The method was further substantiated by EB extraction and colorimetric assay and correlates with that calculated from dynamic contrast enhanced magnetic resonance imaging (DCE-MRI). The changes in tumor vasculature at different time points were assessed with NEB PET in U-87 MG and UM-SCC-22B tumor models after treatment with bevacizumab or doxorubicin. Result: The Ps values calculated from tumor and blood TACs from multiple time-point static images are consistent with those from dynamic images. Moreover, the Ps showed a positive and significant correlation with extracted EB concentration and KPS-MRI generated from DCE-MRI, which further confirmed the soundness of this methodology. The antiangiogenic effect of bevacizumab could be revealed by NEB PET in U-87 MG tumors as early as 8 hrs after therapy, demonstrated by a substantial decrease of Ps. On the contrary, there was no significant change of Ps in bevacizumab treated UM-SCC-22B tumors, compared with control group. However, the significant changes of Pswere overestimated in doxorubicin treated UM-SCC-22B tumors. Conclusions: We successfully developed a relatively convenient and novel strategy to evaluate vascular permeability and blood volume using NEB PET. This method will be advantageous in evaluating vascular permeability, promoting drug delivery, and monitoring tumor response to therapeutics that affect tumor angiogenesis. PMID:28744320

Cage and linear structured polysiloxane/epoxy hybrids for coatings: Surface property and film permeability.

PubMed

Ma, Yanli; He, Ling; Jia, Mengjun; Zhao, Lingru; Zuo, Yanyan; Hu, Pingan

2017-08-15

Three polysiloxane/epoxy hybrids obtained by evolving cage- or linear-structured polysiloxane into poly glycidyl methacrylate (PGMA) matrix are compared used as coatings. One is the cage-structured hybrid of P(GMA/MA-POSS) copolymer obtained by GMA and methacrylisobutyl polyhedral oligomeric silsesquioxane (MA-POSS) via free radical polymerization, the other two are PGMA/NH 2 -POSS and PGMA/NH 2 -PDMS hybrids by cage-structured aminopropyllsobutyl POSS (NH 2 -POSS) or linear-structured diamino terminated poly(dimethylsiloxane) (NH 2 -PDMS) to cure PGMA. The effect of MA-POSS, NH 2 -POSS and NH 2 -PDMS on polysiloxane/epoxy hybrid films is characterized according to their surface morphology, transparency, permeability, adhesive strength and thermo-mechanical properties. Due to caged POSS tending to agglomerate onto the film surface, P(GMA/MA-POSS) and PGMA/NH 2 -POSS films exhibit much more heterogeneous surfaces than PGMA/NH 2 -PDMS film, but the well-compatibility between epoxy matrix and MA-POSS has provided P(GMA/MA-POSS) film with much higher transmittance (98%) than PGMA/NH 2 -POSS film (24%), PGMA/NH 2 -PDMS film (27%) and traditional epoxy resin film (5%). The introduction of polysiloxane into epoxy matrix is confirmed to create hybrids with strong adhesive strength (526-1113N) and high thermos-stability (T g =262-282°C), especially the cage-structured P(GMA/MA-POSS) hybrid (1113N and 282°C), but the flexible PDMS improves PGMA/NH 2 -PDMS hybrid with much higher storage modulus (519MPa) than PGMA/NH 2 -POSS (271MPa), which suggests that PDMS is advantage in improving the film stiffness than POSS cages. However, cage-structured P(GMA/MA-POSS) and PGMA/NH 2 -POSS indicate higher permeability than PGMA/NH 2 -PDMS and traditional epoxy resin. Comparatively, the cage-structured P(GMA/MA-POSS) hybrid is the best coating in transparency, permeability, adhesive strength and thermostability, but linear-structured PGMA/NH 2 -PDMS hybrid behaviors the best coating in mechanical property. Copyright © 2017 Elsevier Inc. All rights reserved.

Geothermal implications of a refined composition-age geologic map for the volcanic terrains of southeast Oregon, northeast California, and southwest Idaho, USA

USGS Publications Warehouse

Burns, Erick; Gannett, Marshall W.; Sherrod, David R.; Keith, Mackenzie K.; Curtis, Jennifer A.; Bartolino, James R.; Engott, John A.; Scandella, Benjamin P.; Stern, Michelle A.; Flint, Alan L.

2017-01-01

Sufficient temperatures to generate steam likely exist under most of the dominantly volcanic terrains of southeast Oregon, northeast California, and southeast Idaho, USA, but finding sufficient permeability to allow efficient advective heat exchange is an outstanding challenge. A new thematic interpretation of existing state-level geologic maps provides an updated and refined distribution of the composition and age of geologic units for the purposes of assessing the implications for measurement and development of geothermal resources. This interpretation has been developed to better understand geothermal and hydrologic resources of the region. Comparison of the new geologic categories with available hydrologic data shows that younger volcanogenic terrains tend to have higher primary permeability than older terrains. Decrease in primary permeability with age is attributable to weathering and hydrothermal alteration of volcanogenic deposits to pore-filling clays and deposition of secondary deposits (e.g., zeolites). Spring density as a function of geology and precipitation can be used to infer groundwater flow path length within the upper aquifers. Beneath the upper aquifers, we postulate that, due to accelerated hydrothermal alteration at temperatures ~>30 °C, primary permeability at depths of geothermal interest will be limited, and that secondary permeability is a more viable target for hydrothermal fluid withdrawal. Because open fractures resulting from tensile stresses will affect all geologic layers, regions with a significant amount of groundwater flow through shallow, structurally controlled secondary permeability may overlay zones of deep secondary permeability. Regardless of whether the shallow permeability is connected with the deep permeability, shallow groundwater flow can mask the presence of deep hydrothermal flow, resulting in blind geothermal systems. Ideally, hydraulic connectivity between shallow and deep secondary permeability is limited, so that shallow groundwater does not cool potential geothermal reservoirs.

Monitoring CO2 penetration and storage in the brine-saturated low permeable sandstone by the geophysical exploration technologies

NASA Astrophysics Data System (ADS)

Honda, H.; Mitani, Y.; Kitamura, K.; Ikemi, H.; Imasato, M.

2017-12-01

Carbon dioxide (CO2) capture and storage (CCS) plays a vital role in reducing greenhouse gas emissions. In the northern part of Kyushu region of Japan, complex geological structure (Coalfield) is existed near the CO2 emission source and has 1.06 Gt of CO2 storage capacity. The geological survey shows that these layers are formed by low permeable sandstone. It is necessary to monitor the CO2 behavior and clear the mechanisms of CO2 penetration and storage in the low permeable sandstone. In this study, measurements of complex electrical impedance (Z) and elastic wave velocity (P-wave velocity: Vp) were conducted during the supercritical CO2 injection experiment into the brine-saturated low permeable sandstone. The experiment conditions were as follows; Confining pressure: 20 MPa, Initial pore pressure: 10 MPa, 40 °, CO2 injection rate: 0.01 to 0.5 mL/min. Z was measured in the center of the specimen and Vp were measured at three different heights of the specimen at constant intervals. In addition, we measured the longitudinal and lateral strain at the center of the specimen, the pore pressure and CO2 injection volume (CO2 saturation). During the CO2 injection, the change of Z and Vp were confirmed. In the drainage terms, Vp decreased drastically once CO2 reached the measurement cross section.Vp showed the little change even if the flow rate increased (CO2 saturation increased). On the other hand, before the CO2 front reached, Z decreased with CO2-dissolved brine. After that, Z showed continuously increased as the CO2 saturation increased. From the multi-parameter (Hydraulic and Rock-physics parameters), we revealed the detail CO2 behavior in the specimen. In the brine-saturated low permeable sandstone, the slow penetration of CO2 was observed. However, once CO2 has passed, the penetration of CO2 became easy in even for brine-remainded low permeable sandstone. We conclude low permeable sandstone has not only structural storage capacity but also residual tapping (Capillary trapping) capacity. There is a positive possibility to conduct CCS in the low-quality reservoir (low permeable sandstone).

Estimating permeability from quasi-static deformation: Temporal variations and arrival time inversion

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vasco, D.W.; Ferretti, Alessandro; Novali, Fabrizio

2008-05-01

Transient pressure variations within a reservoir can be treated as a propagating front and analyzed using an asymptotic formulation. From this perspective one can define a pressure 'arrival time' and formulate solutions along trajectories, in the manner of ray theory. We combine this methodology and a technique for mapping overburden deformation into reservoir volume change as a means to estimate reservoir flow properties, such as permeability. Given the entire 'travel time' or phase field, obtained from the deformation data, we can construct the trajectories directly, there-by linearizing the inverse problem. A numerical study indicates that, using this approach, we canmore » infer large-scale variations in flow properties. In an application to Interferometric Synthetic Aperture (InSAR) observations associated with a CO{sub 2} injection at the Krechba field, Algeria, we image pressure propagation to the northwest. An inversion for flow properties indicates a linear trend of high permeability. The high permeability correlates with a northwest trending fault on the flank of the anticline which defines the field.« less

Lesion dehydration rate changes with the surface layer thickness during enamel remineralization

NASA Astrophysics Data System (ADS)

Chang, Nai-Yuan N.; Jew, Jamison M.; Fried, Daniel

2018-02-01

A transparent highly mineralized outer surface zone is formed on caries lesions during remineralization that reduces the permeability to water and plaque generated acids. However, it has not been established how thick the surface zone should be to inhibit the penetration of these fluids. Near-IR (NIR) reflectance coupled with dehydration can be used to measure changes in the fluid permeability of lesions in enamel and dentin. Based on our previous studies, we postulate that there is a strong correlation between the surface layer thickness and the rate of dehydration. In this study, the rates of dehydration for simulated lesions in enamel with varying remineralization durations were measured. Reflectance imaging at NIR wavelengths from 1400-2300 nm, which coincides with higher water absorption and manifests the greatest sensitivity to contrast changes during dehydration measurements, was used to image simulated enamel lesions. The results suggest that the relationship between surface zone thickness and lesion permeability is highly non-linear, and that a small increase in the surface layer thickness may lead to a significant decrease in permeability.

Dynamic Measurement of Tumor Vascular Permeability and Perfusion using a Hybrid System for Simultaneous Magnetic Resonance and Fluorescence Imaging.

PubMed

Ren, Wuwei; Elmer, Andreas; Buehlmann, David; Augath, Mark-Aurel; Vats, Divya; Ripoll, Jorge; Rudin, Markus

2016-04-01

Assessing tumor vascular features including permeability and perfusion is essential for diagnostic and therapeutic purposes. The aim of this study was to compare fluorescence and magnetic resonance imaging (MRI)-based vascular readouts in subcutaneously implanted tumors in mice by simultaneous dynamic measurement of tracer uptake using a hybrid fluorescence molecular tomography (FMT)/MRI system. Vascular permeability was measured using a mixture of extravascular imaging agents, GdDOTA and the dye Cy5.5, and perfusion using a mixture of intravascular agents, Endorem and a fluorescent probe (Angiosense). Dynamic fluorescence reflectance imaging (dFRI) was integrated into the hybrid system for high temporal resolution. Excellent correspondence between uptake curves of Cy5.5/GdDOTA and Endorem/Angiosense has been found with correlation coefficients R > 0.98. The two modalities revealed good agreement regarding permeability coefficients and centers-of-gravity of the imaging agent distribution. The FMT/dFRI protocol presented is able to accurately map physiological processes and poses an attractive alternative to MRI for characterizing tumor neoangiogenesis.

Basalt fiber reinforced polymer composites: Processing and properties

NASA Astrophysics Data System (ADS)

Liu, Qiang

A high efficiency rig was designed and built for in-plane permeability measurement of fabric materials. A new data derivation procedure to acquire the flow fluid pattern in the experiment was developed. The measurement results of the in-plane permeability for basalt twill 31 fabric material showed that a high correlation exists between the two principal permeability values for this fabric at 35% fiber volume fraction. This may be the most important scientific contribution made in this thesis. The results from radial measurements corresponded quite well with those from Unidirectional (UD) measurements, which is a well-established technique. No significant differences in mechanical properties were found between basalt fabric reinforced polymer composites and glass composites reinforced by a fabric of similar weave pattern. Aging results indicate that the interfacial region in basalt composites may be more vulnerable to environmental damage than that in glass composites. However, the basalt/epoxy interface may have been more durable than the glass/epoxy interface in tension-tension fatigue because the basalt composites have significantly longer fatigue life. In this thesis, chapter I reviews the literature on fiber reinforced polymer composites, with concentration on permeability measurement, mechanical properties and durability. Chapter II discusses the design of the new rig for in-plane permeability measurement, the new derivation procedure for monitoring of the fluid flow pattern, and the permeability measurement results. Chapter III compares the mechanical properties and durability between basalt fiber and glass fiber reinforced polymer composites. Lastly, chapter IV gives some suggestions and recommendations for future work.

The utility of rat jejunal permeability for biopharmaceutics classification system.

PubMed

Zakeri-Milani, Parvin; Valizadeh, Hadi; Tajerzadeh, Hosnieh; Islambulchilar, Ziba

2009-12-01

The biopharmaceutical classification system has been developed to provide a scientific approach for classifying drug compounds based on their dose/solubility ratio and human intestinal permeability. Therefore in this study a new classification is presented, which is based on a correlation between rat and human intestinal permeability values. In situ technique in rat jejunum was used to determine the effective intestinal permeability of tested drugs. Then three dimensionless parameters--dose number, absorption number, and dissolution number (D(o), A(n), and D(n))--were calculated for each drug. Four classes of drugs were defined, that is, class I, D(0) < 0.5, P(eff(rat)) > 5.09 x 10(-5) cm/s; class II, D(o) > 1, P(eff(rat)) > 5.09 x 10( -5) cm/s; class III, D(0) < 0.5, P(eff(rat)) < 4.2 x 10(-5) cm/s; and class IV, D(o) > 1, P(eff(rat)) < 4.2 x 10(-5) cm/s. A region of borderline drugs (0.5 < D(o) < 1, 4.2 x 10(-5) < P(eff(rat)) < 5.09 x 10(-5) cm/s) was also defined. According to obtained results and proposed classification for drugs, it is concluded that drugs could be categorized correctly based on dose number and their intestinal permeability values in rat model using single-pass intestinal perfusion technique. This classification enables us to remark defined characteristics for intestinal absorption of all four classes using suitable cutoff points for both dose number and rat effective intestinal permeability values.

Moisture sorption and permeability characteristics of polymer films: implications for their use as barrier coatings for solid dosage forms containing hydrolyzable drug substances.

PubMed

Mwesigwa, Enosh; Basit, Abdul W; Buckton, Graham

2008-10-01

Moisture sorption and permeability characteristics of polymer films were studied and their effectiveness to protect a hydrolyzable drug assessed. Cast films were prepared from Eudragit L30 D-55, Eudragit EPO, Opadry AMB and Sepifilm LP dispersions, which were also applied onto tablet cores formulated with aspirin as a model moisture sensitive active ingredient. Sorption studies were undertaken using dynamic vapour sorption, ranging between 0% and 90% RH at 25 degrees C. Cast films exhibited fast equilibration (

Quantification of gap junction selectivity.

PubMed

Ek-Vitorín, Jose F; Burt, Janis M

2005-12-01

Gap junctions, which are essential for functional coordination and homeostasis within tissues, permit the direct intercellular exchange of small molecules. The abundance and diversity of this exchange depends on the number and selectivity of the comprising channels and on the transjunctional gradient for and chemical character of the permeant molecules. Limited knowledge of functionally significant permeants and poor detectability of those few that are known have made it difficult to define channel selectivity. Presented herein is a multifaceted approach to the quantification of gap junction selectivity that includes determination of the rate constant for intercellular diffusion of a fluorescent probe (k2-DYE) and junctional conductance (gj) for each junction studied, such that the selective permeability (k2-DYE/gj) for dyes with differing chemical characteristics or junctions with differing connexin (Cx) compositions (or treatment conditions) can be compared. In addition, selective permeability can be correlated using single-channel conductance when this parameter is also measured. Our measurement strategy is capable of detecting 1) rate constants and selective permeabilities that differ across three orders of magnitude and 2) acute changes in that rate constant. Using this strategy, we have shown that 1) the selective permeability of Cx43 junctions to a small cationic dye varied across two orders of magnitude, consistent with the hypothesis that the various channel configurations adopted by Cx43 display different selective permeabilities; and 2) the selective permeability of Cx37 vs. Cx43 junctions was consistently and significantly lower.

Aneurysm permeability following coil embolization: packing density and coil distribution.

PubMed

Chueh, Ju-Yu; Vedantham, Srinivasan; Wakhloo, Ajay K; Carniato, Sarena L; Puri, Ajit S; Bzura, Conrad; Coffin, Spencer; Bogdanov, Alexei A; Gounis, Matthew J

2015-09-01

Rates of durable aneurysm occlusion following coil embolization vary widely, and a better understanding of coil mass mechanics is desired. The goal of this study is to evaluate the impact of packing density and coil uniformity on aneurysm permeability. Aneurysm models were coiled using either Guglielmi detachable coils or Target coils. The permeability was assessed by taking the ratio of microspheres passing through the coil mass to those in the working fluid. Aneurysms containing coil masses were sectioned for image analysis to determine surface area fraction and coil uniformity. All aneurysms were coiled to a packing density of at least 27%. Packing density, surface area fraction of the dome and neck, and uniformity of the dome were significantly correlated (p<0.05). Hence, multivariate principal components-based partial least squares regression models were used to predict permeability. Similar loading vectors were obtained for packing and uniformity measures. Coil mass permeability was modeled better with the inclusion of packing and uniformity measures of the dome (r(2)=0.73) than with packing density alone (r(2)=0.45). The analysis indicates the importance of including a uniformity measure for coil distribution in the dome along with packing measures. A densely packed aneurysm with a high degree of coil mass uniformity will reduce permeability. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions.

Petrophysics of Lower Silurian sandstones and integration with the tectonic-stratigraphic framework, Appalachian basin, United States

USGS Publications Warehouse

Castle, J.W.; Byrnes, A.P.

2005-01-01

Petrophysical properties were determined for six facies in Lower Silurian sandstones of the Appalachian basin: fluvial, estuarine, upper shoreface, lower shoreface, tidal channel, and tidal flat. Fluvial sandstones have the highest permeability for a given porosity and exhibit a wide range of porosity (2-18%) and permeability (0.002-450 md). With a transition-zone thickness of only 1-6 m (3-20 ft), fluvial sandstones with permeability greater than 5 md have irreducible water saturation (Siw) less than 20%, typical of many gas reservoirs. Upper shoreface sandstones exhibit good reservoir properties with high porosity (10-21%), high permeability (3-250 md), and low S iw (<20%). Lower shoreface sandstones, which are finer grained, have lower porosity (4-12%), lower permeability (0.0007-4 md), thicker transition zones (6-180 m [20-600 ft]), and higher S iw. In the tidal-channel, tidal-flat, and estuarine facies, low porosity (average < 6%), low permeability (average < 0.02 md), and small pore throats result in large transition zones (30-200 m; 100-650 ft) and high water saturations. The most favorable reservoir petrophysical properties and the best estimated production from the Lower Silurian sandstones are associated with fluvial and upper shoreface facies of incised-valley fills, which we interpret to have formed predominantly in areas of structural recesses that evolved from promontories along a collisional margin during the Taconic orogeny. Although the total thickness of the sandstone may not be as great in these areas, reservoir quality is better than in adjacent structural salients, which is attributed to higher energy depositional processes and shallower maximum burial depth in the recesses than in the salients. Copyright ??2005. The American Association of Petroleum Geologists. All rights reserved.

Clay minerals related to the circulation of geothermal fluids in boreholes at Rittershoffen (Alsace, France)

NASA Astrophysics Data System (ADS)

Vidal, Jeanne; Patrier, Patricia; Genter, Albert; Beaufort, Daniel; Dezayes, Chrystel; Glaas, Carole; Lerouge, Catherine; Sanjuan, Bernard

2018-01-01

Two geothermal wells, GRT-1 and GRT-2, were drilled into the granite at Rittershoffen (Alsace, France) in the Upper Rhine Graben to exploit geothermal resources at the sediment-basement interface. Brine circulation occurs in a permeable fracture network and leads to hydrothermal alteration of the host rocks. The goal of the study was to characterize the petrography and mineralogy of the altered rocks with respect to the permeable fracture zones in the granitic basement. As clay minerals are highly reactive to hydrothermal alteration, they can be used as indicators of present-day and paleo-circulation systems. Special attention has been paid to the textural, structural and chemical properties of these minerals. The fine-grained clay fraction (< 5 μm) was analyzed around the originally permeable fracture zones to observe the crystal structure of clay minerals using X-ray diffraction. Chemical microanalysis of the clay minerals was performed using scanning electron microscopy coupled with energy dispersive X-ray spectroscopy. The occurrences of mixed layers illite-smectite ( 10% smectite) provide a promising guide for identifying the fracture zones that control the present-day circulation of geothermal fluids in the Rittershoffen wells. However, multistage paleo-circulation systems could lead to an abundance of heterogeneous and fine-grained illitic minerals that could plug the fracture system. The permeability of fracture zones in the GRT-1 well was likely reduced because of an intense illitization, and the well was stimulated. The occurrence of chlorite in the permeable fracture zones of GRT-2 is indicative of less intense illitization, and the natural permeability is much higher in GRT-2 than in GRT-1.

Modelling the effect of mixture components on permeation through skin.

PubMed

Ghafourian, T; Samaras, E G; Brooks, J D; Riviere, J E

2010-10-15

A vehicle influences the concentration of penetrant within the membrane, affecting its diffusivity in the skin and rate of transport. Despite the huge amount of effort made for the understanding and modelling of the skin absorption of chemicals, a reliable estimation of the skin penetration potential from formulations remains a challenging objective. In this investigation, quantitative structure-activity relationship (QSAR) was employed to relate the skin permeation of compounds to the chemical properties of the mixture ingredients and the molecular structures of the penetrants. The skin permeability dataset consisted of permeability coefficients of 12 different penetrants each blended in 24 different solvent mixtures measured from finite-dose diffusion cell studies using porcine skin. Stepwise regression analysis resulted in a QSAR employing two penetrant descriptors and one solvent property. The penetrant descriptors were octanol/water partition coefficient, logP and the ninth order path molecular connectivity index, and the solvent property was the difference between boiling and melting points. The negative relationship between skin permeability coefficient and logP was attributed to the fact that most of the drugs in this particular dataset are extremely lipophilic in comparison with the compounds in the common skin permeability datasets used in QSAR. The findings show that compounds formulated in vehicles with small boiling and melting point gaps will be expected to have higher permeation through skin. The QSAR was validated internally, using a leave-many-out procedure, giving a mean absolute error of 0.396. The chemical space of the dataset was compared with that of the known skin permeability datasets and gaps were identified for future skin permeability measurements. Copyright 2010 Elsevier B.V. All rights reserved.

Permeability measurements on rock samples from Unzen Scientific Drilling Project Drill Hole 4 (USDP-4)

NASA Astrophysics Data System (ADS)

Watanabe, Tohru; Shimizu, Yuhta; Noguchi, Satoshi; Nakada, Setsuya

2008-07-01

Permeability measurement was made on five rock samples from USDP-4 cores. Rock samples were collected from the conduit zone and its country rock. One sample (C14-1-1) is considered as a part of the feeder dyke for the 1991-1995 eruption. The transient pulse method was employed under confining pressure up to 50 MPa. Compressional wave velocity was measured along with permeability. The measured permeability ranges from 10 - 19 to 10 - 17 m 2 at the atmospheric pressure, and is as low as that reported for tight rocks such as granite. The permeability decreases with increasing confining pressure, while the compressional wave velocity increases. Assuming that pores are parallel elliptical tubes, the pressure dependence of permeability requires aspect ratio of 10 - 4 -10 - 2 at the atmospheric pressure. The pore aperture is estimated to be less than 1 μm. The estimated aspect ratio and pore aperture suggest that connectivity of pores is maintained by narrow cracks. The existence of cracks is supported by the pressure dependence of compressional wave velocity. Narrow cracks (< 1 μm) are observed in dyke samples, and they must have been created after solidification. Dyke samples do not provide us information of pore structures during degassing, since exsolved gas has mostly escaped and pores governing the gas permeable flow should have been lost. Both dyke and country rock samples provide us information of materials around ascending magma. Although the measured small-scale permeability cannot be directly applied to geological-scale processes, it gives constrains on studies of large-scale permeability.

The Correlation between Radon Emission Concentration and Subsurface Geological Condition

NASA Astrophysics Data System (ADS)

Kuntoro, Yudi; Setiawan, Herru L.; Wijayanti, Teni; Haerudin, Nandi

2018-03-01

Exploration activities with standard methods have already encountered many obstacles in the field. Geological survey is often difficult to find outcrop because they are covered by vegetation, alluvial layer or as a result of urban development and housing. Seismic method requires a large expense and licensing in the use of dynamite is complicated. Method of gravity requires the operator to go back (looping) to the starting point. Given some of these constraints, therefore it needs a solution in the form of new method that can work more efficiently with less cost. Several studies in various countries have shown a correlation between the presence of hydrocarbons and Radon gas concentration in the earth surface. By utilizing the properties of Radon that can migrate to the surface, the value of Radon concentration in the surface is suggested to provide information about the subsurface structure condition. Radon is the only radioactive substance that gas-phased at atmospheric temperature. It is very abundant in the earth mantle. The vast differences of temperatures and pressures between the mantle and the earth crust cause the convection flow toward earth surface. Radon in gas phase will be carried by convection flow to the surface. The quantity of convection currents depend on the porosity and permeability of rocks where Radon travels within, so that Radon concentration in the earth surface delineates the porosity and permeability of subsurface rock layers. Some measurements were carried out at several locations with various subsurface geological conditions, including proven oil fields, proven geothermal field, and frontier area as a comparison. These measurements show that the average and the background concentration threshold in the proven oil field (11,200 Bq/m3) and proven geothermal field (7,820 Bq/m3) is much higher than the quantity in frontier area (329 and 1,620 Bq/m3). Radon concentration in the earth surface is correlated with the presence of geological faults. Peak concentrations of Radon takes place along the fault.

The role of wellbore remediation on the evolution of groundwater quality from CO₂ and brine leakage

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mansoor, Kayyum; Carroll, Susan A.; Sun, Yunwei

Long-term storage of CO₂ in underground reservoirs requires a careful assessment to evaluate risk to groundwater sources. The focus of this study is to assess time-frames required to restore water quality to pre-injection levels based on output from complex reactive transport simulations that exhibit plume retraction within a 200-year simulation period. We examined the relationship between plume volume, cumulative injected CO₂ mass, and permeability. The role of mitigation was assessed by projecting falloffs in plume volumes from their maximum peak levels with a Gaussian function to estimate plume recovery times to reach post-injection groundwater compositions. The results show a strongmore » correlation between cumulative injected CO₂ mass and maximum plume pH volumes and a positive correlation between CO₂ flux, cumulative injected CO₂, and plume recovery times, with secondary dependence on permeability.« less

The role of wellbore remediation on the evolution of groundwater quality from CO₂ and brine leakage

DOE PAGES

Mansoor, Kayyum; Carroll, Susan A.; Sun, Yunwei

2014-12-31

Long-term storage of CO₂ in underground reservoirs requires a careful assessment to evaluate risk to groundwater sources. The focus of this study is to assess time-frames required to restore water quality to pre-injection levels based on output from complex reactive transport simulations that exhibit plume retraction within a 200-year simulation period. We examined the relationship between plume volume, cumulative injected CO₂ mass, and permeability. The role of mitigation was assessed by projecting falloffs in plume volumes from their maximum peak levels with a Gaussian function to estimate plume recovery times to reach post-injection groundwater compositions. The results show a strongmore » correlation between cumulative injected CO₂ mass and maximum plume pH volumes and a positive correlation between CO₂ flux, cumulative injected CO₂, and plume recovery times, with secondary dependence on permeability.« less

Indoor radon, geogenic radon surrogates and geology - Investigations on their correlation.

PubMed

Friedmann, H; Baumgartner, A; Bernreiter, M; Gräser, J; Gruber, V; Kabrt, F; Kaineder, H; Maringer, F J; Ringer, W; Seidel, C; Wurm, G

2017-01-01

The indoor radon concentration was measured in most houses in a couple of municipalities in Austria. At the same time the activity concentration of radium in soil, the soil gas radon concentration, the permeability of the ground and the ambient dose equivalent rate were also measured and the geological situations (geological units) were recorded too. From the indoor radon concentration and different house and living parameters a radon potential (Austrian radon potential) was derived which should represent the radon concentration in a standard room. Another radon potential (Neznal radon potential) was calculated from the soil gas radon concentration and the permeability. The aim of the investigation was to correlate all the different variables and to test if the use of surrogate data (e.g. geological information, ambient dose equivalent rate, etc.) can be used to judge the radon risk for an area without performing numerous indoor measurements. Copyright © 2016 Elsevier Ltd. All rights reserved.

Computation of fluid flow and pore-space properties estimation on micro-CT images of rock samples

NASA Astrophysics Data System (ADS)

Starnoni, M.; Pokrajac, D.; Neilson, J. E.

2017-09-01

Accurate determination of the petrophysical properties of rocks, namely REV, mean pore and grain size and absolute permeability, is essential for a broad range of engineering applications. Here, the petrophysical properties of rocks are calculated using an integrated approach comprising image processing, statistical correlation and numerical simulations. The Stokes equations of creeping flow for incompressible fluids are solved using the Finite-Volume SIMPLE algorithm. Simulations are then carried out on three-dimensional digital images obtained from micro-CT scanning of two rock formations: one sandstone and one carbonate. Permeability is predicted from the computed flow field using Darcy's law. It is shown that REV, REA and mean pore and grain size are effectively estimated using the two-point spatial correlation function. Homogeneity and anisotropy are also evaluated using the same statistical tools. A comparison of different absolute permeability estimates is also presented, revealing a good agreement between the numerical value and the experimentally determined one for the carbonate sample, but a large discrepancy for the sandstone. Finally, a new convergence criterion for the SIMPLE algorithm, and more generally for the family of pressure-correction methods, is presented. This criterion is based on satisfaction of bulk momentum balance, which makes it particularly useful for pore-scale modelling of reservoir rocks.

Integration of ANFIS, NN and GA to determine core porosity and permeability from conventional well log data

NASA Astrophysics Data System (ADS)

Ja'fari, Ahmad; Hamidzadeh Moghadam, Rasoul

2012-10-01

Routine core analysis provides useful information for petrophysical study of the hydrocarbon reservoirs. Effective porosity and fluid conductivity (permeability) could be obtained from core analysis in laboratory. Coring hydrocarbon bearing intervals and analysis of obtained cores in laboratory is expensive and time consuming. In this study an improved method to make a quantitative correlation between porosity and permeability obtained from core and conventional well log data by integration of different artificial intelligent systems is proposed. The proposed method combines the results of adaptive neuro-fuzzy inference system (ANFIS) and neural network (NN) algorithms for overall estimation of core data from conventional well log data. These methods multiply the output of each algorithm with a weight factor. Simple averaging and weighted averaging were used for determining the weight factors. In the weighted averaging method the genetic algorithm (GA) is used to determine the weight factors. The overall algorithm was applied in one of SW Iran’s oil fields with two cored wells. One-third of all data were used as the test dataset and the rest of them were used for training the networks. Results show that the output of the GA averaging method provided the best mean square error and also the best correlation coefficient with real core data.

Flow unit modeling and fine-scale predicted permeability validation in Atokan sandstones: Norcan East Kansas

USGS Publications Warehouse

Bhattacharya, S.; Byrnes, A.P.; Watney, W.L.; Doveton, J.H.

2008-01-01

Characterizing the reservoir interval into flow units is an effective way to subdivide the net-pay zone into layers for reservoir simulation. Commonly used flow unit identification techniques require a reliable estimate of permeability in the net pay on a foot-by-foot basis. Most of the wells do not have cores, and the literature is replete with different kinds of correlations, transforms, and prediction methods for profiling permeability in pay. However, for robust flow unit determination, predicted permeability at noncored wells requires validation and, if necessary, refinement. This study outlines the use o f a spreadsheet-based permeability validation technique to characterize flow units in wells from the Norcan East field, Clark County, Kansas, that produce from Atokan aged fine- to very fine-grained quartzarenite sandstones interpreted to have been deposited in brackish-water, tidally dominated restricted tidal-flat, tidal-channel, tidal-bar, and estuary bay environments within a small incised-valley-fill system. The methodology outlined enables the identification of fieldwide free-water level and validates and refines predicted permeability at 0.5-ft (0.15-m) intervals by iteratively reconciling differences in water saturation calculated from wire-line log and a capillary-pressure formulation that models fine- to very fine-grained sandstone with diagenetic clay and silt or shale laminae. The effectiveness of this methodology was confirmed by successfully matching primary and secondary production histories using a flow unit-based reservoir model of the Norcan East field without permeability modifications. The methodologies discussed should prove useful for robust flow unit characterization of different kinds of reservoirs. Copyright ?? 2008. The American Association of Petroleum Geologists. All rights reserved.

Permeability predictions for sand-clogged Portland cement pervious concrete pavement systems.

PubMed

Haselbach, Liv M; Valavala, Srinivas; Montes, Felipe

2006-10-01

Pervious concrete is an alternative paving surface that can be used to reduce the nonpoint source pollution effects of stormwater runoff from paved surfaces such as roadways and parking lots by allowing some of the rainfall to permeate into the ground below. This infiltration rate may be adversely affected by clogging of the system, particularly clogging or covering by sand in coastal areas. A theoretical relation was developed between the effective permeability of a sand-clogged pervious concrete block, the permeability of sand, and the porosity of the unclogged block. Permeabilities were then measured for Portland cement pervious concrete systems fully covered with extra fine sand in a flume using simulated rainfalls. The experimental results correlated well with the theoretical calculated permeability of the pervious concrete system for pervious concrete systems fully covered on the surface with sand. Two different slopes (2% and 10%) were used. Rainfall rates were simulated for the combination of direct rainfall (passive runoff) and for additional stormwater runoff from adjacent areas (active runoff). A typical pervious concrete block will allow water to pass through at flow rates greater than 0.2 cm/s and a typical extra fine sand will have a permeability of approximately 0.02 cm/s. The limit of the system with complete sand coverage resulted in an effective system permeability of approximately 0.004 cm/s which is similar to the rainfall intensity of a 30 min duration, 100-year frequency event in the southeastern United States. The results obtained are important in designing and evaluating pervious concrete as a paving surface within watershed management systems for controlling the quantity of runoff.

Heterogeneous blood-tumor barrier permeability determines drug efficacy in experimental brain metastases of breast cancer.

PubMed

Lockman, Paul R; Mittapalli, Rajendar K; Taskar, Kunal S; Rudraraju, Vinay; Gril, Brunilde; Bohn, Kaci A; Adkins, Chris E; Roberts, Amanda; Thorsheim, Helen R; Gaasch, Julie A; Huang, Suyun; Palmieri, Diane; Steeg, Patricia S; Smith, Quentin R

2010-12-01

Brain metastases of breast cancer appear to be increasing in incidence, confer significant morbidity, and threaten to compromise gains made in systemic chemotherapy. The blood-tumor barrier (BTB) is compromised in many brain metastases; however, the extent to which this influences chemotherapeutic delivery and efficacy is unknown. Herein, we answer this question by measuring BTB passive integrity, chemotherapeutic drug uptake, and anticancer efficacy in vivo in two breast cancer models that metastasize preferentially to brain. Experimental brain metastasis drug uptake and BTB permeability were simultaneously measured using novel fluorescent and phosphorescent imaging techniques in immune-compromised mice. Drug-induced apoptosis and vascular characteristics were assessed using immunofluorescent microscopy. Analysis of over 2,000 brain metastases from two models (human 231-BR-Her2 and murine 4T1-BR5) showed partial BTB permeability compromise in greater than 89% of lesions, varying in magnitude within and between metastases. Brain metastasis uptake of ¹⁴C-paclitaxel and ¹⁴C-doxorubicin was generally greater than normal brain but less than 15% of that of other tissues or peripheral metastases, and only reached cytotoxic concentrations in a small subset (∼10%) of the most permeable metastases. Neither drug significantly decreased the experimental brain metastatic ability of 231-BR-Her2 tumor cells. BTB permeability was associated with vascular remodeling and correlated with overexpression of the pericyte protein desmin. This work shows that the BTB remains a significant impediment to standard chemotherapeutic delivery and efficacy in experimental brain metastases of breast cancer. New brain permeable drugs will be needed. Evidence is presented for vascular remodeling in BTB permeability alterations. ©2010 AACR.

Heterogeneous Blood-Tumor Barrier Permeability Determines Drug Efficacy in Experimental Brain Metastases of Breast Cancer

PubMed Central

Lockman, Paul R.; Mittapalli, Rajendar K.; Taskar, Kunal S.; Rudraraju, Vinay; Gril, Brunilde; Bohn, Kaci A.; Adkins, Chris E.; Roberts, Amanda; Thorsheim, Helen R.; Gaasch, Julie A.; Huang, Suyun; Palmieri, Diane; Steeg, Patricia S.; Smith, Quentin R.

2010-01-01

Purpose Brain metastases of breast cancer appear to be increasing in incidence, confer significant morbidity, and threaten to compromise gains made in systemic chemotherapy. The blood-tumor barrier (BTB) is compromised in many brain metastases, however, the extent to which this influences chemotherapeutic delivery and efficacy is unknown. Herein, we answer this question by measuring BTB passive integrity, chemotherapeutic drug uptake, and anticancer efficacy in vivo in two breast cancer models that metastasize preferentially to brain. Experimental Design Experimental brain metastasis drug uptake and BTB permeability were simultaneously measured using novel fluorescent and phosphorescent imaging techniques in immune compromised mice. Drug-induced apoptosis and vascular characteristics were assessed using immunofluorescent microscopy. Results Analysis of >2000 brain metastases from two models (human 231-BR-Her2 and murine 4T1-BR5) demonstrated partial BTB permeability compromise in >89% lesions, varying in magnitude within and between metastases. Brain metastasis uptake of 14C- paclitaxel and 14C- doxorubicin was generally greater than normal brain but <15% of that of other tissues or peripheral metastases, and only reached cytotoxic concentrations in a small subset (~10%) of the most permeable metastases. Neither drug significantly decreased the experimental brain metastatic ability of 231-BR-Her2 tumor cells. BTB permeability was associated with vascular remodeling and correlated with over expression of the pericyte protein, desmin. Conclusions This work demonstrates that the BTB remains a significant impediment to standard chemotherapeutic delivery and efficacy in experimental brain metastases of breast cancer. New brain permeable drugs will be needed. Evidence is presented for vascular remodeling in BTB permeability alterations. PMID:20829328

Influence of overconsolidated condition on permeability evolution in silica sand

NASA Astrophysics Data System (ADS)

Kimura, S.; Kaneko, H.; Ito, T.; Nishimura, O.; Minagawa, H.

2013-12-01

Permeability of sediments is important factors for production of natural gas from natural gas hydrate bearing layers. Methane-hydrate is regarded as one of the potential resources of natural gas. As results of coring and logging, the existence of a large amount of methane-hydrate is estimated in the Nankai Trough, offshore central Japan, where many folds and faults have been observed. In the present study, we investigate the permeability of silica sand specimen forming the artificial fault zone after large displacement shear in the ring-shear test under two different normal consolidated and overconsolidated conditions. The significant influence of overconsolidation ratio (OCR) on permeability evolution is not found. The permeability reduction is influenced a great deal by the magnitude of normal stress during large displacement shearing. The grain size distribution and structure observation in the shear zone of specimen after shearing at each normal stress level are analyzed by laser scattering type particle analyzer and scanning electron microscope, respectively. It is indicated that the grain size and porosity reduction due to the particle crushing are the factor of the permeability reduction. This study is financially supported by METI and Research Consortium for Methane Hydrate Resources in Japan (the MH21 Research Consortium).

The Permeability of the Sodium Channel to Metal Cations in Myelinated Nerve

PubMed Central

Hille, Bertil

1972-01-01

The relative permeability of sodium channels to eight metal cations is studied in myelinated nerve fibers. Ionic currents under voltage-clamp conditions are measured in Na-free solutions containing the test ion. Measured reversal potentials and the Goldman equation are used to calculate the permeability sequence: Na+ ≈ Li+ > Tl+ > K+. The ratio P K/P Na is 1/12. The permeabilities to Rb+, Cs+, Ca++, and Mg++ are too small to measure. The permeability ratios agree with observations on the squid giant axon and show that the reversal potential E Na differs significantly from the Nernst potential for Na+ in normal axons. Opening and closing rates for sodium channels are relatively insensitive to the ionic composition of the bathing medium, implying that gating is a structural property of the channel rather than a result of the movement or accumulation of particular ions around the channel. A previously proposed pore model of the channel accommodates the permeant metal cations in a partly hydrated form. The observed sequence of permeabilities follows the order expected for binding to a high field strength anion in Eisenman's theory of ion exchange equilibria. PMID:5025743

Gas permeability of ice-templated, unidirectional porous ceramics.

PubMed

Seuba, Jordi; Deville, Sylvain; Guizard, Christian; Stevenson, Adam J

2016-01-01

We investigate the gas flow behavior of unidirectional porous ceramics processed by ice-templating. The pore volume ranged between 54% and 72% and pore size between 2.9 [Formula: see text]m and 19.1 [Formula: see text]m. The maximum permeability ([Formula: see text] [Formula: see text] m[Formula: see text]) was measured in samples with the highest total pore volume (72%) and pore size (19.1 [Formula: see text]m). However, we demonstrate that it is possible to achieve a similar permeability ([Formula: see text] [Formula: see text] m[Formula: see text]) at 54% pore volume by modification of the pore shape. These results were compared with those reported and measured for isotropic porous materials processed by conventional techniques. In unidirectional porous materials tortuosity ([Formula: see text]) is mainly controlled by pore size, unlike in isotropic porous structures where [Formula: see text] is linked to pore volume. Furthermore, we assessed the applicability of Ergun and capillary model in the prediction of permeability and we found that the capillary model accurately describes the gas flow behavior of unidirectional porous materials. Finally, we combined the permeability data obtained here with strength data for these materials to establish links between strength and permeability of ice-templated materials.

Study of the internal morphology of cation-exchange membranes by means of electroosmotic permeability relaxations.

PubMed

Barragán, V M; Izquierdo-Gil, M A; Godino, M P; Villaluenga, J P G

2009-10-01

The effect of an ac sinusoidal perturbation of known amplitude and frequency superimposed to the usual dc applied electric voltage difference on the electroosmotic flow through three cation-exchange membranes with different morphology has been studied. A dispersion of the electroosmotic permeability on the frequency of the applied ac signal has been found for the three membranes investigated, observing that the electroosmotic permeability reaches maximum values for some characteristic values of the frequency. These characteristic frequency values, which are related to relaxation processes in heterogeneous media, depend on the membrane system and permit to obtain information about the different structures of the membrane system. Thus, the study of the electroosmotic permeability relaxation can be used as a method to study the internal morphology of a cation-exchange membrane in a given electrolyte medium.

Bovine and Porcine Transscleral Solute Transport: Influence of Lipophilicity and the Choroid–Bruch’s Layer

PubMed Central

Cheruvu, Narayan P. S.; Kompella, Uday B.

2012-01-01

Purpose To determine the influence of the choroid–Bruch’s layer and solute lipophilicity on in vitro transscleral drug permeability in bovine and porcine eyes. Methods The in vitro permeability of two VEGF inhibitory drugs, budesonide and celecoxib, which are lipophilic and neutral at physiologic pH, and of three marker solutes, 3H-mannitol (hydrophilic, neutral), sodium fluorescein (hydrophilic, anionic), and rhodamine 6G (lipophilic, cationic), were determined across freshly excised scleras, with or without the underlying choroid–Bruch’s layer. Select studies were performed using porcine sclera with and without choroid–Bruch’s layer. Neural retina was removed by exposure of the eyecup to isotonic buffer and wherever required, the retinal pigment epithelial (RPE) layer of the preparation was disrupted and removed by exposure to hypertonic buffer. Because of the poor solubility of celecoxib and budesonide, permeability studies were conducted with 5% wt/vol of hydroxypropyl-β-cyclodextrin (HPβCD). For other solutes, permeability studies were conducted, with and without HPβCD. Partitioning of the solutes into bovine sclera and choroid–Bruch’s layer was also determined. Results The calculated log (distribution coefficient) values were −2.89, −0.68, 2.18, 3.12, and 4.02 for mannitol, sodium fluorescein, budesonide, celecoxib, and rhodamine 6G, respectively. Removal of RPE was confirmed by transmission electron microscopy and differences in the transport of mannitol. The order of the permeability coefficients (Papp) across sclera and sclera–choroid–Bruch’s layers in bovine and porcine models was 3H-mannitol > fluorescein > budesonide > celecoxib > rhodamine 6G, with HPβCD, and 3H-mannitol > fluorescein > rhodamine 6G, without HPβCD. The presence of choroid–Bruch’s layer reduced the bovine scleral permeability by 2-, 8-, 16-, 36-, and 50-fold and porcine tissue permeability by 2-, 7-, 15-, 33-, and 40-fold, respectively, for mannitol, sodium fluorescein, budesonide, celecoxib, and rhodamine 6G. The partition coefficients measured in bovine tissues correlated positively with the log (distribution coefficient) and exhibited a trend opposite that of transport. The partition coefficient ratio of bovine choroid–Bruch’s layer to sclera was ~1, 1.5, 1.7, 2, and 3.5, respectively, for the solutes, as listed earlier. Conclusions The choroid–Bruch’s layer is a more significant barrier to drug transport than is sclera. It hinders the transport of lipophilic solutes, especially a cationic solute, more than hydrophilic solutes and in a more dramatic way than does sclera. The reduction in transport across this layer directly correlates with solute binding to the tissue. Understanding the permeability properties of sclera and underlying layers would be beneficial in designing better drugs for transscleral delivery. PMID:17003447

Ultrasound-Enhanced Delivery of Antibiotics and Anti-Inflammatory Drugs into the Eye

PubMed Central

Nabili, Marjan; Patel, Hetal; Mahesh, Sankaranarayana P.; Liu, Ji; Geist, Craig; Zderic, Vesna

2013-01-01

Delivery of sufficient amounts of therapeutic drugs into the eye is often a challenging task. In this study, ultrasound application (frequencies of 400 KHz to 1 MHz, intensities of 0.3–1.0 W/cm2 and exposure duration of 5 min) was investigated to overcome the barrier properties of cornea, which is a typical route for topical administration of ophthalmic drugs. Permeability of ophthalmic drugs, tobramycin and dexamethasone and sodium fluorescein, a drug-mimicking compound, was studied in ultrasound- and sham-treated rabbit corneas in vitro using a standard diffusion cell setup. Light microscopy observations were used to determine ultrasound-induced structural changes in the cornea. For tobramycin, an increase in permeability for ultrasound- and sham-treated corneas was not statistically significant. Increase of 46%–126% and 32%–109% in corneal permeability was observed for sodium fluorescein and dexamethasone, respectively, with statistical significance (p < 0.05) achieved at all treatment parameter combinations (compared with sham treatments) except for 1-MHz ultrasound applications for dexamethasone experiments. This permeability increase was highest at 400 kHz and appeared to be higher at higher intensities applied. Histologic analysis showed structural changes that were limited to epithelial layers of cornea. In summary, ultrasound application provided enhancement of drug delivery, increasing the permeability of the cornea for the anti-inflammatory ocular drug dexamethasone. Future investigations are needed to determine the effectiveness and safety of this application in in vivo long-term survival studies. (E-mail: mnabili@gwu.edu) PMID:23415283

Stress path dependent hydromechanical behaviour of heterogeneous carbonate rock

NASA Astrophysics Data System (ADS)

Gland, N.; Dautriat, J.; Dimanov, A.; Raphanel, J.

2010-06-01

The influence of stress paths, representative of reservoir conditions, on the hydromechanical behavior of a moderately heterogeneous carbonate has been investigated. Multiscale structural heterogeneities, common for instance in carbonate rocks, can strongly alter the mechanical response and significantly influence the evolution of flow properties with stress. Using a triaxial cell, the permeability evolutions during compression and the effects of brittle (fracture) and plastic (pore collapse) deformations at yield, were measured. A strong scattering was observed on the mechanical response both in term of compressibility and failure threshold. Using the porosity scaling predicted by an adapted effective medium theory (based on crack growth under Hertzian contact), we have rescaled the critical pressures by the normalized porosity deviation. This procedure reduces efficiently the scattering, revealing in the framework of proportional stress path loading, a linear relation between the critical pressures and the stress path parameter through all the deformation regimes. It leads to a new formulation for the critical state envelope in the 'mean stress, deviatoric stress' diagram. The attractive feature of this new yield envelope formulation relies on the fact that only the two most common different mechanical tests 'Uniaxial Compression' and 'Hydrostatic Compression', are needed to define entirely the yield envelope. Volumic strains and normalized permeabilities are finally mapped in the stresses diagram and correlated.

CO2 sequestration potential of Charqueadas coal field in Brazil

DOE Office of Scientific and Technical Information (OSTI.GOV)

Romanov, V; Santarosa, C; Crandall, D

2013-02-01

Although coal is not the primary source of energy in Brazil there is growing interest to evaluate the potential of coal from the south of the country for various activities. The I2B coal seamin the Charqueadas coal field has been considered a target for enhanced coal bed methane production and CO2 sequestration. A detailed experimental study of the samples from this seam was conducted at the NETL with assistance from the Pontif?cia Universidade Cat?lica Do Rio Grande Do Sul. Such properties as sorption capacity, internal structure of the samples, porosity and permeability were of primary interest in this characterization study.more » The samples used were low rank coals (high volatile bituminous and sub-bituminous) obtained from the I2B seam. It was observed that the temperature effect on adsorption capacity correlates negatively with as-received water and mineral content. Langmuir CO2 adsorption capacity of the coal samples ranged 0.61?2.09 mmol/g. The upper I2B seam appears to be overall more heterogeneous and less permeable than the lower I2B seam. The lower seam coal appears to have a large amount of micro-fractures that do not close even at 11 MPa of confining pressure.« less

Characterization of maximally random jammed sphere packings. III. Transport and electromagnetic properties via correlation functions

NASA Astrophysics Data System (ADS)

Klatt, Michael A.; Torquato, Salvatore

2018-01-01

In the first two papers of this series, we characterized the structure of maximally random jammed (MRJ) sphere packings across length scales by computing a variety of different correlation functions, spectral functions, hole probabilities, and local density fluctuations. From the remarkable structural features of the MRJ packings, especially its disordered hyperuniformity, exceptional physical properties can be expected. Here we employ these structural descriptors to estimate effective transport and electromagnetic properties via rigorous bounds, exact expansions, and accurate analytical approximation formulas. These property formulas include interfacial bounds as well as universal scaling laws for the mean survival time and the fluid permeability. We also estimate the principal relaxation time associated with Brownian motion among perfectly absorbing traps. For the propagation of electromagnetic waves in the long-wavelength limit, we show that a dispersion of dielectric MRJ spheres within a matrix of another dielectric material forms, to a very good approximation, a dissipationless disordered and isotropic two-phase medium for any phase dielectric contrast ratio. We compare the effective properties of the MRJ sphere packings to those of overlapping spheres, equilibrium hard-sphere packings, and lattices of hard spheres. Moreover, we generalize results to micro- and macroscopically anisotropic packings of spheroids with tensorial effective properties. The analytic bounds predict the qualitative trend in the physical properties associated with these structures, which provides guidance to more time-consuming simulations and experiments. They especially provide impetus for experiments to design materials with unique bulk properties resulting from hyperuniformity, including structural-color and color-sensing applications.

Occurrence of oil in the Austin Chalk at Van field, Van Zandt County, Texas: A unique geologic setting

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lowe, J.T.; Carrington, D.B.

1990-09-01

The Austin Chalk is buried to a depth of only 2,100-2,500 ft and has retained primary microporosity unlike the typical deep fractured chalk reservoirs. The Van structure is a complexly faulted domal anticline created by salt intrusion and is approximately 2,000 ft higher than surrounding structures in the area. A major northwest-dipping fault acts as the primary trapping mechanism. The field has produced 0.5 billion BO from thick Woodbine sands since its discovery in 1929. Occurrence of oil in the Austin Chalk has been known since the field discovery, but prior completions were low rate oil producers. Recent development ofmore » a large fracture stimulation technique has resulted in increased production rates of up to 300 BOPD. The Austin Chalk reservoir limits were determined by isopaching feet of minimum productive resistivity having porosity above a cutoff value. The resistivity/porosity isopach showed a direct correlation between Austin Chalk productivity and the Austin Chalk structure and faulting pattern. Structural evidence along with oil typing indicate that the oil in the Austin Chalk has migrated upward along fault planes and through fault juxtaposition from the Woodbine sands 200 ft below the Austin Chalk. Thin-section and scanning electron microscopy work performed on conventional cores showed that the Van Austin Chalk formation is a very fine grained limestone composed primarily of coccoliths. Various amounts of detrital illite clay are present in the coccolith matrix. All effective porosity is micro-intergranular and ranges from 15 to 35%. Based on the core analyses, the main porosity reducing agent and therefore control on reservoir quality is the amount of detrital clay present filling the micropores. Permeability is very low with values ranging from 0.01 to 1.5 md. There is no evidence of significant natural fractures in the core. Artificial fractures are therefore required to create the permeability needed to sustain commercial production rates.« less

Strain-dependent permeability of volcanic rocks.

NASA Astrophysics Data System (ADS)

Farquharson, Jamie; Heap, Michael; Baud, Patrick

2016-04-01

We explore permeability evolution during deformation of volcanic materials using a suite of rocks with varying compositions and physical properties (such as porosity ϕ). 40 mm × 20 mm cylindrical samples were made from a range of extrusive rocks, including andesites from Colima, Mexico (ϕ˜0.08; 0.18; 0.21), Kumamoto, Japan (ϕ˜0.13), and Ruapehu, New Zealand (ϕ˜0.15), and basalt from Mt Etna, Italy (ϕ˜0.04). Gas permeability of each sample was measured before and after triaxial deformation using a steady-state benchtop permeameter. To study the strain-dependence of permeability in volcanic rocks, we deformed samples to 2, 3, 4, 6, and 12 % axial strain at a constant strain rate of 10-5 s-1. Further, the influence of failure mode - dilatant or compactant - on permeability was assessed by repeating experiments at different confining pressures. During triaxial deformation, porosity change of the samples was monitored by a servo-controlled pore fluid pump. Below an initial porosity of ˜0.18, and at low confining pressures (≤ 20 MPa), we observe a dilatant failure mode (shear fracture formation). With increasing axial strain, stress is accommodated by fault sliding and the generation of ash-sized gouge between the fracture planes. In higher-porosity samples, or at relatively higher confining pressures (≥ 60 MPa), we observe compactant deformation characterised by a monotonous decrease in porosity with increasing axial strain. The relative permeability k' is given by the change in permeability divided by the initial reference state. When behaviour is dilatant, k' tends to be positive: permeability increases with progressive deformation. However, results suggest that after a threshold amount of strain, k' can decrease. k' always is negative (permeability decreases during deformation) when compaction is the dominant behaviour. Our results show that - in the absence of a sealing or healing process - the efficiency of a fault to transmit fluids is correlated to the degree of strain to which is subjected. Volcanic processes such as dome extrusion, which involve progressive strain on complex fault systems, have been seen to cause fault sliding and the prolific generation of fault gouge. Our results indicate that the permeability of these faults will tend to remain constant or increase during continued extrusion, allowing magmatic gases to readily outgas through permeable fault architectures despite the generation and accumulation of gouge. On the other hand, deeper regions of the edifice that will typically be compacting due to the relatively higher confining pressures, will exhibit a continuous decrease in permeability. The interplay between permeability-increasing and permeability-decreasing processes within the edifice is likely to influence outgassing and eruptive cycles at active volcanoes.

Fault current limiter

DOEpatents

Darmann, Francis Anthony

2013-10-08

A fault current limiter (FCL) includes a series of high permeability posts for collectively define a core for the FCL. A DC coil, for the purposes of saturating a portion of the high permeability posts, surrounds the complete structure outside of an enclosure in the form of a vessel. The vessel contains a dielectric insulation medium. AC coils, for transporting AC current, are wound on insulating formers and electrically interconnected to each other in a manner such that the senses of the magnetic field produced by each AC coil in the corresponding high permeability core are opposing. There are insulation barriers between phases to improve dielectric withstand properties of the dielectric medium.

Reservoir characterization of the Upper Jurassic geothermal target formations (Molasse Basin, Germany): role of thermofacies as exploration tool

NASA Astrophysics Data System (ADS)

Homuth, S.; Götz, A. E.; Sass, I.

2015-06-01

The Upper Jurassic carbonates of the southern German Molasse Basin are the target of numerous geothermal combined heat and power production projects since the year 2000. A production-orientated reservoir characterization is therefore of high economic interest. Outcrop analogue studies enable reservoir property prediction by determination and correlation of lithofacies-related thermo- and petrophysical parameters. A thermofacies classification of the carbonate formations serves to identify heterogeneities and production zones. The hydraulic conductivity is mainly controlled by tectonic structures and karstification, whilst the type and grade of karstification is facies related. The rock permeability has only a minor effect on the reservoir's sustainability. Physical parameters determined on oven-dried samples have to be corrected, applying reservoir transfer models to water-saturated reservoir conditions. To validate these calculated parameters, a Thermo-Triaxial-Cell simulating the temperature and pressure conditions of the reservoir is used and calorimetric and thermal conductivity measurements under elevated temperature conditions are performed. Additionally, core and cutting material from a 1600 m deep research drilling and a 4850 m (total vertical depth, measured depth: 6020 m) deep well is used to validate the reservoir property predictions. Under reservoir conditions a decrease in permeability of 2-3 magnitudes is observed due to the thermal expansion of the rock matrix. For tight carbonates the matrix permeability is temperature-controlled; the thermophysical matrix parameters are density-controlled. Density increases typically with depth and especially with higher dolomite content. Therefore, thermal conductivity increases; however the dominant factor temperature also decreases the thermal conductivity. Specific heat capacity typically increases with increasing depth and temperature. The lithofacies-related characterization and prediction of reservoir properties based on outcrop and drilling data demonstrates that this approach is a powerful tool for exploration and operation of geothermal reservoirs.

Permeability, storage and hydraulic diffusivity controlled by earthquakes

NASA Astrophysics Data System (ADS)

Brodsky, E. E.; Fulton, P. M.; Xue, L.

2016-12-01

Earthquakes can increase permeability in fractured rocks. In the farfield, such permeability increases are attributed to seismic waves and can last for months after the initial earthquake. Laboratory studies suggest that unclogging of fractures by the transient flow driven by seismic waves is a viable mechanism. These dynamic permeability increases may contribute to permeability enhancement in the seismic clouds accompanying hydraulic fracking. Permeability enhancement by seismic waves could potentially be engineered and the experiments suggest the process will be most effective at a preferred frequency. We have recently observed similar processes inside active fault zones after major earthquakes. A borehole observatory in the fault that generated the M9.0 2011 Tohoku earthquake reveals a sequence of temperature pulses during the secondary aftershock sequence of an M7.3 aftershock. The pulses are attributed to fluid advection by a flow through a zone of transiently increased permeability. Directly after the M7.3 earthquake, the newly damaged fault zone is highly susceptible to further permeability enhancement, but ultimately heals within a month and becomes no longer as sensitive. The observation suggests that the newly damaged fault zone is more prone to fluid pulsing than would be expected based on the long-term permeability structure. Even longer term healing is seen inside the fault zone of the 2008 M7.9 Wenchuan earthquake. The competition between damage and healing (or clogging and unclogging) results in dynamically controlled permeability, storage and hydraulic diffusivity. Recent measurements of in situ fault zone architecture at the 1-10 meter scale suggest that active fault zones often have hydraulic diffusivities near 10-2 m2/s. This uniformity is true even within the damage zone of the San Andreas fault where permeability and storage increases balance each other to achieve this value of diffusivity over a 400 m wide region. We speculate that fault zones may evolve to a preferred diffusivity in a dynamic equilibrium.

Understanding fluid transport through the multiscale pore network of a natural shale

NASA Astrophysics Data System (ADS)

Davy, Catherine A.; Nguyen Kim, Thang; Song, Yang; Troadec, David; Blanchenet, Anne-Marie; Adler, Pierre M.

2017-06-01

The pore structure of a natural shale is obtained by three imaging means. Micro-tomography results are extended to provide the spatial arrangement of the minerals and pores present at a voxel size of 700 nm (the macroscopic scale). FIB/SEM provides a 3D representation of the porous clay matrix on the so-called mesoscopic scale (10-20 nm); a connected pore network, devoid of cracks, is obtained for two samples out of five, while the pore network is connected through cracks for two other samples out of five. Transmission Electron Microscopy (TEM) is used to visualize the pore space with a typical pixel size of less than 1 nm and a porosity ranging from 0.12 to 0.25. On this scale, in the absence of 3D images, the pore structure is reconstructed by using a classical technique, which is based on truncated Gaussian fields. Permeability calculations are performed with the Lattice Boltzmann Method on the nanoscale, on the mesoscale, and on the combination of the two. Upscaling is finally done (by a finite volume approach) on the bigger macroscopic scale. Calculations show that, in the absence of cracks, the contribution of the nanoscale pore structure on the overall permeability is similar to that of the mesoscale. Complementarily, the macroscopic permeability is measured on a centimetric sample with a neutral fluid (ethanol). The upscaled permeability on the macroscopic scale is in good agreement with the experimental results.

Electro-osmosis of non-Newtonian fluids in porous media using lattice Poisson-Boltzmann method.

PubMed

Chen, Simeng; He, Xinting; Bertola, Volfango; Wang, Moran

2014-12-15

Electro-osmosis in porous media has many important applications in various areas such as oil and gas exploitation and biomedical detection. Very often, fluids relevant to these applications are non-Newtonian because of the shear-rate dependent viscosity. The purpose of this study was to investigate the behaviors and physical mechanism of electro-osmosis of non-Newtonian fluids in porous media. Model porous microstructures (granular, fibrous, and network) were created by a random generation-growth method. The nonlinear governing equations of electro-kinetic transport for a power-law fluid were solved by the lattice Poisson-Boltzmann method (LPBM). The model results indicate that: (i) the electro-osmosis of non-Newtonian fluids exhibits distinct nonlinear behaviors compared to that of Newtonian fluids; (ii) when the bulk ion concentration or zeta potential is high enough, shear-thinning fluids exhibit higher electro-osmotic permeability, while shear-thickening fluids lead to the higher electro-osmotic permeability for very low bulk ion concentration or zeta potential; (iii) the effect of the porous medium structure depends significantly on the constitutive parameters: for fluids with large constitutive coefficients strongly dependent on the power-law index, the network structure shows the highest electro-osmotic permeability while the granular structure exhibits the lowest permeability on the entire range of power law indices considered; when the dependence of the constitutive coefficient on the power law index is weaker, different behaviors can be observed especially in case of strong shear thinning. Copyright © 2014 Elsevier Inc. All rights reserved.

Assessment of mechanical properties of isolated bovine intervertebral discs from multi-parametric magnetic resonance imaging.

PubMed

Recuerda, Maximilien; Périé, Delphine; Gilbert, Guillaume; Beaudoin, Gilles

2012-10-12

The treatment planning of spine pathologies requires information on the rigidity and permeability of the intervertebral discs (IVDs). Magnetic resonance imaging (MRI) offers great potential as a sensitive and non-invasive technique for describing the mechanical properties of IVDs. However, the literature reported small correlation coefficients between mechanical properties and MRI parameters. Our hypothesis is that the compressive modulus and the permeability of the IVD can be predicted by a linear combination of MRI parameters. Sixty IVDs were harvested from bovine tails, and randomly separated in four groups (in-situ, digested-6h, digested-18h, digested-24h). Multi-parametric MRI acquisitions were used to quantify the relaxation times T1 and T2, the magnetization transfer ratio MTR, the apparent diffusion coefficient ADC and the fractional anisotropy FA. Unconfined compression, confined compression and direct permeability measurements were performed to quantify the compressive moduli and the hydraulic permeabilities. Differences between groups were evaluated from a one way ANOVA. Multi linear regressions were performed between dependent mechanical properties and independent MRI parameters to verify our hypothesis. A principal component analysis was used to convert the set of possibly correlated variables into a set of linearly uncorrelated variables. Agglomerative Hierarchical Clustering was performed on the 3 principal components. Multilinear regressions showed that 45 to 80% of the Young's modulus E, the aggregate modulus in absence of deformation HA0, the radial permeability kr and the axial permeability in absence of deformation k0 can be explained by the MRI parameters within both the nucleus pulposus and the annulus pulposus. The principal component analysis reduced our variables to two principal components with a cumulative variability of 52-65%, which increased to 70-82% when considering the third principal component. The dendograms showed a natural division into four clusters for the nucleus pulposus and into three or four clusters for the annulus fibrosus. The compressive moduli and the permeabilities of isolated IVDs can be assessed mostly by MT and diffusion sequences. However, the relationships have to be improved with the inclusion of MRI parameters more sensitive to IVD degeneration. Before the use of this technique to quantify the mechanical properties of IVDs in vivo on patients suffering from various diseases, the relationships have to be defined for each degeneration state of the tissue that mimics the pathology. Our MRI protocol associated to principal component analysis and agglomerative hierarchical clustering are promising tools to classify the degenerated intervertebral discs and further find biomarkers and predictive factors of the evolution of the pathologies.

Occipital blood-brain barrier permeability is an independent predictor of visual outcome in type 2 diabetes, irrespective of the retinal barrier: A longitudinal study.

PubMed

Abuhaiba, S I; Cordeiro, M; Amorim, A; Cruz, Â; Quendera, B; Ferreira, C; Ribeiro, L; Bernardes, R; Castelo-Branco, M

2018-01-01

Blood-brain barrier (BBB) permeability in type 2 diabetic patients has been previously shown to be altered in certain brain regions such as the basal ganglia and the hippocampus. Because of the histological and functional similarities between the BBB) and the blood-retinal barrier (BRB), we aimed to investigate how the permeability of both barriers predicts visual outcome. We included 2 control groups (acute unilateral stroke patients, n = 9; type 2 diabetics without BRB leakage n = 10) and a case study group of type 2 diabetics with established BRB leakage (n = 17). We evaluated sex, age, disease duration, metabolic impairment, retinopathy grade and BBB permeability as predictors of visual acuity at baseline, 12  and 24 months in the type 2 diabetics without BRB leakage group and the case study group. We have also explored differences in BBB permeability in the occipital lobe and frontal lobe in the 3 different groups. K trans (volume transfer coefficient) and V p (fractional plasma volume) were estimated. The BBB permeability parameter V p was higher in the case study group compared to the unaffected hemisphere of the stroke patient control group, suggesting vascular dynamics were changed in the occipital lobe of type 2 diabetics with established BRB leakage. These patients showed a significant correlation between glycated hemoglobin (HbA1C) levels and occipital and frontal K trans . We report for the first time that occipital BBB permeability is an independent predictor of visual acuity at baseline, as well as at 12 and 24 months, in type 2 diabetics with established BRB leakage. Our results suggest that occipital BBB permeability might be an independent biomarker for visual impairment in patients with established BRB leakage. © 2017 British Society for Neuroendocrinology.

Examination of Blood-Brain Barrier (BBB) Integrity In A Mouse Brain Tumor Model

PubMed Central

On, Ngoc; Mitchell, Ryan; Savant, Sanjot D.; Bachmeier, Corbin. J.; Hatch, Grant M.; Miller, Donald W.

2013-01-01

The present study evaluates, both functionally and biochemically, brain tumor-induced alterations in brain capillary endothelial cells. Brain tumors were induced in Balb/c mice via intracranial injection of Lewis Lung carcinoma (3LL) cells into the right hemisphere of the mouse brain using stereotaxic apparatus. Blood-brain barrier (BBB) permeability was assessed at various stages of tumor development, using both radiolabeled tracer permeability and magnetic resonance imaging (MRI) with gadolinium diethylene-triamine-pentaacetate contrast enhancement (Gad-DTPA). The expression of the drug efflux transporter, P-glycoprotein (P-gp), in the BBB at various stages of tumor development was also evaluated by Western blot and immunohistochemistry. Median mouse survival following tumor cell injection was 17 days. The permeability of the BBB to 3H-mannitol was similar in both brain hemispheres at 7 and 10 days post-injection. By day 15, there was a 2-fold increase in 3H-mannitol permeability in the tumor bearing hemispheres compared to the non-tumor hemispheres. Examination of BBB permeability with Gad-DTPA contrast enhanced MRI indicated cerebral vascular permeability changes were confined to the tumor area. The permeability increase observed at the later stages of tumor development correlated with an increase in cerebral vascular volume suggesting angiogenesis within the tumor bearing hemisphere. Furthermore, the Gad-DPTA enhancement observed within the tumor area was significantly less than Gad-DPTA enhancement within the circumventricular organs not protected by the BBB. Expression of P-gp in both the tumor bearing and non-tumor bearing portions of the brain appeared similar at all time points examined. These studies suggest that although BBB integrity is altered within the tumor site at later stages of development, the BBB is still functional and limiting in terms of solute and drug permeability in and around the tumor. PMID:23184143

The development and evaluation of advanced Kevlar sandwich structure for application to rotorcraft airframes

NASA Astrophysics Data System (ADS)

Minguet, Pierre; Llorente, Steven; Fay, Russell

1991-05-01

The results of an evaluation of DuPont Kevlar-based material systems in sandwich structure designed for rotorcraft primary airframe structure are presented in this report. The focus of this work has been to evaluate the durability and compression strength of thin-gage Kevlar sandwich panels and investigate means of improvement. It was found that sandwich panels made with Kevlar 149 fibers can be as strong as Kevlar 49 structures but have reduced compression stiffness properties at typical operating strain levels. Thermal cycling was found to affect permeability but not strength in thin facesheet sandwich structure. Any increased permeability can be prevented with the use of an interleaf or surfacing plies. The surfacing plies investigated also had a beneficial effect on sandwich strength due to their stabilizing effect on the facesheet in compression. Finally, a previously developed model was used to analyze the residual strength of a sandwich panel after impact damage.

Altered blood-brain barrier permeability and its effect on the distribution of Evans blue and sodium fluorescein in the rat brain applied by intracarotid injection.

PubMed

Kozler, P; Pokorný, J

2003-01-01

The aim was to study the blood-brain permeability according to the distribution in the rat brain of Evans blue (EB) and sodium fluorescein (NaFl) administered by an intracarotid injection. Eighteen animals were divided into six groups according to the state of the blood-brain barrier (BBB) at the moment when the dyes were being applied. In the first two groups, the BBB was intact, in groups 3 and 4 the barrier had been opened osmotically prior to the application of the dyes, and in groups 5 and 6 a cellular edema was induced by hyperhydration before administration of the dyes. The intracellular and extracellular distribution of the dyes was studied by fluorescence microscopy. The histological picture thus represented the morphological correlate of the way BBB permeability had been changed before the application of the dyes.

Permeable Reactive Barriers Designed To Mitigate Eutrophication Alter Bacterial Community Composition and Aquifer Redox Conditions

PubMed Central

Hiller, Kenly A.; Foreman, Kenneth H.; Weisman, David

2015-01-01

Permeable reactive barriers (PRBs) consist of a labile carbon source that is positioned to intercept nitrate-laden groundwater to prevent eutrophication. Decomposition of carbon in the PRB drives groundwater anoxic, fostering microbial denitrification. Such PRBs are an ideal habitat to examine microbial community structure under high-nitrate, carbon-replete conditions in coastal aquifers. We examined a PRB installed at the Waquoit Bay National Estuarine Research Reserve in Falmouth, MA. Groundwater within and below the PRB was depleted in oxygen compared to groundwater at sites upgradient and at adjacent reference sites. Nitrate concentrations declined from a high of 25 μM upgradient and adjacent to the barrier to <0.1 μM within the PRB. We analyzed the total and active bacterial communities filtered from groundwater flowing through the PRB using amplicons of 16S rRNA and of the 16S rRNA genes. Analysis of the 16S rRNA genes collected from the PRB showed that the total bacterial community had high relative abundances of bacteria thought to have alternative metabolisms, such as fermentation, including candidate phyla OD1, OP3, TM7, and GN02. In contrast, the active bacteria had lower abundances of many of these bacteria, suggesting that the bacterial taxa that differentiate the PRB groundwater community were not actively growing. Among the environmental variables analyzed, dissolved oxygen concentration explained the largest proportion of total community structure. There was, however, no significant correlation between measured environmental parameters and the active microbial community, suggesting that controls on the active portion may differ from the community as a whole. PMID:26231655

Seismic-sequence stratigraphy and geologic structure of the Floridan aquifer system near "Boulder Zone" deep wells in Miami-Dade County, Florida

USGS Publications Warehouse

Cunningham, Kevin J.

2015-01-01

In addition to the preceding seismic-reflection analysis, interpretation of geophysical well log data from four effluent injection wells at the North District “Boulder Zone” Well Field delineated a narrow karst collapse structure beneath the injection facility that extends upward about 900 ft from the top of the Boulder Zone to about 125 ft above the top of the uppermost major permeable zone of the Lower Floridan aquifer. No karst collapse structures were identified in the seismic-reflection profiles acquired near the North District “Boulder Zone” Well Field. However, karst collapse structures at the level of the lowermost major permeable zone of the Lower Floridan aquifer at the South District “Boulder Zone” Well Field are present at three locations, as indicated by seismic-reflection data acquired in the C–1 Canal bordering the south side of the injection facility. Results from the North District “Boulder Zone” Well Field well data indicate that a plausible hydraulic connection between faults and stratiform permeability zones may contribute to the upward transport of effluent, terminating above the base of the deepest U.S. Environmental Protection Agency designated underground source of drinking water at the North District “Boulder Zone” Well Field.

Structure-function relationships in soft tissue mechanics: Examining how the micro-scale architecture of biochemical constituents effects health

NASA Astrophysics Data System (ADS)

Schultz, David Sheldon

Countless debilitating pathologies exhibit symptoms that result from altered mechanical behavior of soft tissue. Therefore, it is of clinical and economic importance to mechanically evaluate soft tissues and attribute degenerative changes to alterations in structural constituents. The studies presented here focus on the annulus fibrosus and the sclera. Failure in these tissues is common and catastrophic. The annulus fibrosus may fail, resulting in herniation and nerve impingement, or the disc may degenerate over time, resulting in reduced mobility and pain. Similarly, the sclera may degenerate over time with intraocular pressure spurring creep behavior that distends the eye beyond its ideal shape. This causes myopic vision and puts patients at risk of macular degeneration and retinal detachment. These two tissues share a common structural role as the outer wall of a pressure vessel. Also, they are made of strikingly similar constituents, primarily consisting of water, type I collagen, glycosaminoglycans and elastin. The microstructure of these tissues, however, is very different. The annulus fibrosus is representative of an anisotropic tissue. Its well-organized fibril structure was analyzed via polarization modulated second harmonic microscopy in order to characterize fibril architecture. Structurally relevant biochemical constituents were quantified with biochemical assays. Morphologically healthy annulus tended to have a more highly organized microstructure and tended to absorb more strain energy when subject to a tensile load cycle. Given the strong correlation between fibril organization and select mechanical properties, predictive models will likely benefit from a characterization of fibril continuity and orientation coherence. The sclera is representative of an isotropic tissue. Its less-organized fibril structure has evolved to sustain biaxial plane stress. In the sclera, collagen content and associated crosslinks were primary determinants of stiffness. Substantial collagen crosslink accumulation is a primary factor causing the stiffening of sclera with increased age. The influence of crosslinks dominates diffusion and permeability behavior. Exogenous crosslinking may help modulate the mechanical and fluid transport properties of the sclera and cornea. Treatment with methylglyoxal reduces the permeability and increases the stiffness of both. However, differences in the pre-treatment level of organization within the microstructure encourages asymmetric results.

A stress-dependent model for reservoir stimulation in enhanced geothermal systems

NASA Astrophysics Data System (ADS)

Troiano, Antonio; Giulia Di Giuseppe, Maria; Troise, Claudia; De Natale, Giuseppe

2015-04-01

We present a procedure for testing the interpretation of the induced seismicity. The procedure is based on Coulomb stress changes induced by deep fluid injection during well stimulation, providing a way to estimate how the potential for seismic failure in different volumes of a geothermal reservoir might change due to the water injection. Coulomb stress changes appear to be the main cause for the induced seismicity during the water injection. These stress changes do not only result from changes in the pore pressure, but also from the whole change in the stress tensor at any point in the medium, which results from the pressure perturbations. The numerical procedure presented takes into account the permeability increase that is due to the induced stress changes. A conceptual model that links the induced stress tensor and the permeability modifications is considered to estimate the permeability change induced during the water injection. In this way, we can adapt the medium behavior to mechanical changes, in order to better evaluate the effectiveness of the stimulation process for the enhancement of the reservoir permeability, while also refining the reconstruction of the Coulomb stress change patterns. Numerical tests have been developed that consider a physical medium and a geometry of the system comparable with that of Soultz EGS site (Alsace, France). Tests considering a fixed permeability, both isotropic and anisotropic, indicate a general decrease in the pressure changes when an anisotropic permeability was considered, with respect to the isotropic case. A marked elongation of the coulomb stress change patterns in the regional load direction was retrieved. This effect is enforced when a stress-dependent permeability is taken into account. Permeability enhancement progressively enlarges the seismic volume in turns, while decreasing the pressure in the neighborhood of the bottom of the well. The use of stress-dependent permeability also improves the reconstruction of the observed seismicity pattern. In particular, the large maximum of the coulomb stress changes at the point of injection, which was already mitigated by the consideration of anisotropic permeability, appears further decreased in the new data. The improving of the correlation between the coulomb stress changes and the induced seismicity distribution supports the reliability and robustness of the main hypothesis of this study of the relationship between the induced stress tensor variation and the permeability enhancement. The use of stress-dependent permeability constitutes an important step towards the theoretical planning of stimulation procedures, and towards interpretation and mitigation of the induced seismicity.

Oxygen, water, and sodium chloride transport in soft contact lenses materials.

PubMed

Gavara, Rafael; Compañ, Vicente

2017-11-01

Oxygen permeability, diffusion coefficient of the sodium ions and water flux and permeability in different conventional hydrogel (Hy) and silicone-hydrogel (Si-Hy) contact lenses have been measured experimentally. The results showed that oxygen permeability and transmissibility requirements of the lens have been addressed through the use of siloxane containing hydrogels. In general, oxygen and sodium chloride permeability values increased with the water content of the lens but there was a percolation phenomenon from a given value of water uptake mainly in the Si-Hy lenses which appeared to be related with the differences between free water and bound water contents. The increase of ion permeability with water content did not follow a unique trend indicating a possible dependence of the chemical structure of the polymer and character ionic and non-ionic of the lens. Indeed, the salt permeability values for silicone hydrogel contact lenses were one order of magnitude below those of conventional hydrogel contact lenses, which can be explained by a diffusion of sodium ions occurring only through the hydrophilic channels. The increase of the ionic permeability in Si-Hy materials may be due to the confinement of ions in nanoscale water channels involving possible decreased degrees of freedom for diffusion of both water and ions. In general, ionic lenses presented values of ionic permeability and diffusivity higher than most non-ionic lenses. The tortuosity of the ionic lenses is lower than the non-ionic Si-Hy lenses. Frequency 55 and PureVision exhibited the highest water permeability and flux values and, these parameters were greater for ionic Si-Hy lenses than for ionic conventional hydrogel lenses. © 2016 Wiley Periodicals, Inc. J Biomed Mater Res Part B: Appl Biomater, 105B: 2218-2231, 2017. © 2016 Wiley Periodicals, Inc.

[Effect of plasma membrane ion permeability modulators on respiration and heat output of wheat roots].

PubMed

Alekseeva, V A; Gordon, L Kh; Loseva, N L; Rakhimova, G G; Tsentsevitskiĭ, A N

2006-01-01

A study was made of changes in the rates of respiration, heat production, and membrane characteristics in cells of excised roots of wheat seedlings under the modulation of plasma membrane ion permeability by two membrane active compounds: valinomycin (20 microM (V50)) and chlorpromazine (50 microM (CP50) and 100 microM (CP100)). Both compounds increased the loss of potassium ions, which correlated with the lowering of membrane potential, rate of respiration, and heat production after a 2 h exposure. The differences in alteration of these parameters were due to specific action of either compound on the membrane and to the extent of ion homeostasis disturbance. V20 had a weak effect on the studied parameters. V50 caused an increase of the rate of respiration and heat production, which enhanced following a prolonged action (5 h) and were associated with ion homeostatis restoration. The extent of alteration of membrane characteristics (an increase of potassium loss by roots, and lowering of cell membrane potential) as well as energy expense under the action of CP50 during the first period were more pronounced than in the presence of V50. During a prolonged action of CP50, the increase of respiration intensity and heat production correlated with partial recovery of ion homeostatis in cells. Essential lowering of membrane potential and substantial loss of potassium by cells, starting from the early stages of their response reaction, were followed by inhibition of respiration rate and heat production. Alterations of the structure and functional characteristics of excised root cells indicate the intensification of the membrane-tropic effect of a prolonged action of CP100, and the lack of cell energy resources.

Fault Damage Zone Permeability in Crystalline Rocks from Combined Field and Laboratory Measurements: Can we Predict Damage Zone Permeability?

NASA Astrophysics Data System (ADS)

Mitchell, T. M.; Faulkner, D. R.

2009-04-01

Models predicting crustal fluid flow are important for a variety of reasons; for example earthquake models invoking fluid triggering, predicting crustal strength modelling flow surrounding deep waste repositories or the recovery of natural resources. Crustal fluid flow is controlled by both the bulk transport properties of rocks as well as heterogeneities such as faults. In nature, permeability is enhanced in the damage zone of faults, where fracturing occurs on a wide range of scales. Here we analyze the contribution of microfracture damage on the permeability of faults that cut through low porosity, crystalline rocks by combining field and laboratory measurements. Microfracture densities surrounding strike-slip faults with well-constrained displacements ranging over 3 orders of magnitude (~0.12 m - 5000 m) have been analyzed. The faults studied are excellently exposed within the Atacama Fault Zone, where exhumation from 6-10 km has occurred. Microfractures in the form of fluid inclusion planes (FIPs) show a log-linear decrease in fracture density with perpendicular distance from the fault core. Damage zone widths defined by the density of FIPs scale with fault displacement, and an empirical relationship for microfracture density distribution throughout the damage zone with displacement is derived. Damage zone rocks will have experienced differential stresses that were less than, but some proportion of, the failure stress. As such, permeability data from progressively loaded, initially intact laboratory samples, in the pre-failure region provide useful insights into fluid flow properties of various parts of the damage zone. The permeability evolution of initially intact crystalline rocks under increasing differential load leading to macroscopic failure was determined at water pore pressures of 50 MPa and effective pressure of 10 MPa. Permeability is seen to increase by up to, and over, two orders of magnitude prior to macroscopic failure. Further experiments were stopped at various points in the loading history in order to correlate microfracture density within the samples with permeability. By combining empirical relationships determined from both quantitative fieldwork and experiments we present a new model that allows microfracture permeability distribution throughout the damage zone to be determined as function of increasing fault displacement.

Relative permeability of fractured wellbore cement: an experimental investigation using electrical resistivity monitoring for moisture content

NASA Astrophysics Data System (ADS)

Um, W.; Rod, K. A.; Strickland, C. E.

2016-12-01

Permeability is a critical parameter needed to understand flow in subsurface environments; it is particularly important in deep subsurface reservoirs where multiphase fluid flow is common, such as carbon sequestration and geothermal reservoirs. Cement is used in the annulus of wellbores due to its low permeable properties to seal aquifers, reducing leaks to adjacent strata. Extreme subsurface environments of CO2 storage and geothermal production conditions will eventually reduce the cement integrity, propagating fracture networks and increasing the permeability for air and/or water. To date, there have been no reproducible experimental investigations of relative permeability in fractured wellbore cement published. To address this gap, we conducted a series of experiments using fractured Portland cement monoliths with increasing fracture networks. The monolith cylinder sides were jacketed with heavy-duty moisture-seal heat-shrink tubing, then fractured using shear force applied via a hydraulic press. Fractures were generated with different severity for each of three monoliths. Stainless steel endcaps were fixed to the monoliths using the same shrink-wrapped jacket. Fracture characteristics were determined using X-ray microtomography and image analysis. Flow controllers were used to control flow of water and air to supply continuous water or water plus air, both of which were delivered through the influent end cap. Effluent air flow was monitored using a flow meter, and water flow was measured gravimetrically. To monitor the effective saturation of the fractures, a RCON2 concrete bulk electrical resistivity test device was attached across both endcaps and a 0.1M NaNO3 brine was used as the transport fluid to improve resistivity measurements. Water content correlated to resistivity measurements with a r2 > 0.96. Data from the experiments was evaluated using two relative permeability models, the Corey-curve, often used for modeling relative permeability in porous media, and the X-curve, commonly used to depict the relative permeability of fractures. Relative permeability measurements from the cores containing a higher degree of fracturing showed a better fit to X-curve, while data from the minimally fractured cores were better described by fitting to the Corey-curve.

Relations between acoustic cavitation and skin resistance during intermediate- and high-frequency sonophoresis.

PubMed

Rich, Kyle T; Hoerig, Cameron L; Rao, Marepalli B; Mast, T Douglas

2014-11-28

Enhanced skin permeability is known to be achieved during sonophoresis due to ultrasound-induced cavitation. However, the mechanistic role of cavitation during sonophoresis has been extensively investigated only for low-frequency (LFS, <100 kHz) applications. Here, mechanisms of permeability-enhancing stable and inertial cavitation were investigated by passively monitoring subharmonic and broadband emissions arising from cavitation isolated within or external to porcine skin in vitro during intermediate- (IFS, 100-700 kHz) and high-frequency sonophoresis (HFS, >1 MHz). The electrical resistance of skin, a surrogate measure of the permeability of skin to a variety of compounds, was measured to quantify the reduction and subsequent recovery of the skin barrier during and after exposure to pulsed (1 second pulse, 20% duty cycle) 0.41 and 2.0 MHz ultrasound over a range of acoustic powers (0-21.7 W) for 30 min. During IFS, significant skin resistance reductions and acoustic emissions from cavitation were measured exclusively when cavitation was isolated outside of the skin. Time-dependent skin resistance reductions measured during IFS correlated significantly with subharmonic and broadband emission levels. During HFS, significant skin resistance reductions were accompanied by significant acoustic emissions from cavitation measured during trials that isolated cavitation activity either outside of skin or within skin. Time-dependent skin resistance reductions measured during HFS correlated significantly greater with subharmonic than with broadband emission levels. The reduction of the skin barrier due to sonophoresis was reversible in all trials; however, effects incurred during IFS recovered more slowly and persisted over a longer period of time than HFS. These results quantitatively demonstrate the significance of cavitation during sonophoresis and suggest that the mechanisms and post-treatment longevity of permeability enhancement due to IFS and HFS treatments are different. Copyright © 2014 Elsevier B.V. All rights reserved.

Effect of human rhinovirus infection on airway epithelium tight junction protein disassembly and transepithelial permeability.

PubMed

Looi, Kevin; Troy, Niamh M; Garratt, Luke W; Iosifidis, Thomas; Bosco, Anthony; Buckley, Alysia G; Ling, Kak-Ming; Martinovich, Kelly M; Kicic-Starcevich, Elizabeth; Shaw, Nicole C; Sutanto, Erika N; Zosky, Graeme R; Rigby, Paul J; Larcombe, Alexander N; Knight, Darryl A; Kicic, Anthony; Stick, Stephen M

2016-10-11

No studies have assessed the effects of human rhinovirus (HRV) infection on epithelial tight junctions (TJs) and resultant barrier function. To correlate viral infection with TJ disassembly, epithelial barrier integrity, and function. Human airway epithelial cells were infected with HRV minor serotype 1B (HRV-1B) at various 50% tissue culture infectivity doses (TCID 50 ) over 72 hours. HRV replication was assessed by quantitative-polymerase chain reaction (qPCR) while cell viability and apoptosis were assessed by proliferation and apoptotic assays, respectively. Protein expression of claudin-1, occludin, and zonula occludens protein-1 (ZO-1) was assessed using In-Cell™ Western assays. Transepithelial permeability assays were performed to assess effects on barrier functionality. RT 2 Profiler focused qPCR arrays and pathway analysis evaluating associations between human TJ and antiviral response were performed to identify potential interactions and pathways between genes of interests. HRV-1B infection affected viability that was both time and TCID 50 dependent. Significant increases in apoptosis and viral replication post-infection correlated with viral titer. Viral infection significantly decreased claudin-1 protein expression at the lower TCID 50 , while a significant decrease in all three TJ protein expressions occurred at higher TCID 50 . Decrease in protein expression was concomitant with significant increases in epithelial permeability of fluorescein isothiocynate labeled-dextran 4 and 20 kDa. Analysis of focused qPCR arrays demonstrated a significant decrease in ZO-1 gene expression. Furthermore, network analysis between human TJ and antiviral response genes revealed possible interactions and regulation of TJ genes via interleukin (IL)-15 in response to HRV-1B infection. HRV-1B infection directly alters human airway epithelial TJ expression leading to increased epithelial permeability potentially via an antiviral response of IL-15.

Analytical modeling of mercury injection in high-rank coalbed methane reservoirs based on pores and microfractures: a case study of the upper carboniferous Taiyuan Formation in the Heshun block of the Qinshui Basin, central China

NASA Astrophysics Data System (ADS)

Gu, Yang; Ding, Wenlong; Yin, Shuai; Wang, Ruyue; Mei, Yonggui; Liu, Jianjun

2017-03-01

The coalbed gas reservoirs in the Qinshui Basin in central China are highly heterogeneous; thus, the reservoir characteristics are difficult to assess. Research on the pore structure of a reservoir can provide a basis for understanding the occurrence and seepage mechanisms of coal reservoirs, rock physics modeling and the formulation of rational development plans. Therefore, the pore structure characteristics of the coalbed gas reservoirs in the high rank bituminous coal in the No. 15 coal seam of the Carboniferous Taiyuan Group in the Heshun coalbed methane (CBM) blocks in the northeastern Qinshui Basin were analyzed based on pressure mercury and scanning electron microscopy data. The results showed that the effective porosity system of the coal reservoir was mainly composed of pores and microfractures and that the pore throat configuration of the coal reservoir was composed of pores and microthroats. A model was developed based on the porosity and microfractures of the high rank coal rock and the mercury injection and drainage curves. The mercury injection curve model and the coal permeability are well correlated and were more reliable for the analysis of coal and rock pore system connectivity than the mercury drainage curve model. Coal rocks with developed microfractures are highly permeable; the production levels are often high during the initial drainage stages, but they decrease rapidly. A significant portion of the natural gas remains in the strata and cannot be exploited; therefore, the ultimate recovery is rather low. Coal samples with underdeveloped microfractures have lower permeabilities. While the initial production levels are lower, the production cycle is longer, and the ultimate recovery is higher. Therefore, the initial production levels of coal reservoirs with poorly developed microfractures in some regions of China may be low. However, over the long term, due to their higher ultimate recoveries and longer production cycles, the total gas production levels will increase. This understanding can provide an important reference for developing appropriate CBM development plans.

Fracture size and transmissivity correlations: Implications for transport simulations in sparse three-dimensional discrete fracture networks following a truncated power law distribution of fracture size

NASA Astrophysics Data System (ADS)

Hyman, J. D.; Aldrich, G.; Viswanathan, H.; Makedonska, N.; Karra, S.

2016-08-01

We characterize how different fracture size-transmissivity relationships influence flow and transport simulations through sparse three-dimensional discrete fracture networks. Although it is generally accepted that there is a positive correlation between a fracture's size and its transmissivity/aperture, the functional form of that relationship remains a matter of debate. Relationships that assume perfect correlation, semicorrelation, and noncorrelation between the two have been proposed. To study the impact that adopting one of these relationships has on transport properties, we generate multiple sparse fracture networks composed of circular fractures whose radii follow a truncated power law distribution. The distribution of transmissivities are selected so that the mean transmissivity of the fracture networks are the same and the distributions of aperture and transmissivity in models that include a stochastic term are also the same. We observe that adopting a correlation between a fracture size and its transmissivity leads to earlier breakthrough times and higher effective permeability when compared to networks where no correlation is used. While fracture network geometry plays the principal role in determining where transport occurs within the network, the relationship between size and transmissivity controls the flow speed. These observations indicate DFN modelers should be aware that breakthrough times and effective permeabilities can be strongly influenced by such a relationship in addition to fracture and network statistics.

The Mitochondrial Permeability Transition Pore: Channel Formation by F-ATP Synthase, Integration in Signal Transduction, and Role in Pathophysiology

PubMed Central

Bernardi, Paolo; Rasola, Andrea; Forte, Michael; Lippe, Giovanna

2015-01-01

The mitochondrial permeability transition (PT) is a permeability increase of the inner mitochondrial membrane mediated by a channel, the permeability transition pore (PTP). After a brief historical introduction, we cover the key regulatory features of the PTP and provide a critical assessment of putative protein components that have been tested by genetic analysis. The discovery that under conditions of oxidative stress the F-ATP synthases of mammals, yeast, and Drosophila can be turned into Ca2+-dependent channels, whose electrophysiological properties match those of the corresponding PTPs, opens new perspectives to the field. We discuss structural and functional features of F-ATP synthases that may provide clues to its transition from an energy-conserving into an energy-dissipating device as well as recent advances on signal transduction to the PTP and on its role in cellular pathophysiology. PMID:26269524

Detachment and diffusive-convective transport in an evolving heterogeneous two-dimensional biofilm hybrid model.

PubMed

Luna, E; Domínguez-Zacarias, G; Ferreira, C Pio; Velasco-Hernandez, J X

2004-12-01

Under the hypothesis of correlation between biofilm survival and nutrient availability, by considering fluid drag forces and mortality due to nutrient depletion, a biofilm detachment/breaking condition is derived. The mechanisms leading to biofilm detachment/breaking are discussed. We construct and describe a hybrid model for a heterogeneous biofilm attached to walls in a channel where liquid is flowing. The model is called hybrid because it couples conservation equations with a cellular automaton. The biofilm layer is viewed as a porous medium with variable porosity, tortuosity, and permeability. The model is solved using asymptotic and finite differences methods. Results for porosity, nutrient distribution, and average surface location are presented. The model is capable of reproducing biofilm heterogeneity as well as the typical surface fingering (mushroomlike structure).

Identification of a residue in helix 2 of rice plasma membrane intrinsic proteins that influences water permeability.

PubMed

Zhang, Minhua; Lü, Shouqin; Li, Guowei; Mao, Zhilei; Yu, Xin; Sun, Weining; Tang, Zhangcheng; Long, Mian; Su, Weiai

2010-12-31

Molecular selection, ion exclusion, and water permeation are well known regulatory mechanisms in aquaporin. Water permeability was found to be diverse in different subgroups of plasma membrane intrinsic proteins (PIPs), even though the residues surrounding the water holes remained the same across the subgroups. Upon homology modeling and structural comparison, a conserved Ala/Ile(Val) residue difference was identified in helix 2 that affected the conformation of the NPA region and consequently influenced the water permeability. The residue difference was found to be conservative within the two subgroups of PIPs in rice as well as in other plants. Functional tests further confirmed the prediction via site-directed mutagenesis where replacement of Ala(103) or Ala(102) in respective OsPIP1;1 or OsPIP1;3 with Val yielded 7.0- and 2.2-fold increases in water transportation, and substitution of Ile(98) or Val(95) in respective OsPIP2;3 or OsPIP2;7 with Ala resulted in 73 or 52% reduction of water transportation. Based on structural analyses and molecular dynamics simulations, we proposed that the difference in water permeability was attributed to the orientation variations of helix 2 that modified water-water and water-protein interactions.

Drug Delivery to the Brain by Focused Ultrasound Induced Blood-Brain Barrier Disruption: Quantitative Evaluation of Enhanced Permeability of Cerebral Vasculature Using Two-Photon Microscopy

PubMed Central

Nhan, Tam; Burgess, Alison; Cho, Eunice E.; Stefanovic, Bojana; Lilge, Lothar; Hynynen, Kullervo

2013-01-01

Reversible and localized blood-brain barrier disruption (BBBD) using focused ultrasound (FUS) in combination with intravascularly administered microbubbles (MBs) has been established as a non-invasive method for drug delivery to the brain. Using two-photon fluorescence microscopy (2PFM), we imaged the cerebral vasculature during BBBD and observed the extravasation of fluorescent dye in real-time in vivo. We measured the enhanced permeability upon BBBD for both 10kDa and 70kDa dextran conjugated Texas Red (TR) at the acoustic pressure range of 0.2-0.8 MPa and found permeability constants of TR10kDa and TR70kDa vary from 0.0006 to 0.0359 min−1 and 0.0003 to 0.0231 min−1, respectively. For both substances, a linear regression was applied on the permeability constant against the acoustic pressure and the slope from best-fit was found to be 0.039±0.005 min−1/MPa and 0.018±0.005 min−1/MPa, respectively. In addition, the pressure threshold for successfully induced BBBD was confirmed to be 0.4-0.6 MPa. Finally, we identified two types of leakage kinetics (fast and slow) that exhibit distinct permeability constants and temporal disruption onsets, as well as demonstrated their correlations with the applied acoustic pressure and vessel diameter. Direct assessment of vascular permeability and insights on its dependency on acoustic pressure, vessel size and leakage kinetics are important for treatment strategies of BBBD-based drug delivery. PMID:24008151

pH-Dependent Stability of Creatine Ethyl Ester: Relevance to Oral Absorption

PubMed Central

Gufford, Brandon T.; Ezell, Edward L.; Robinson, Dennis H.; Miller, Donald W.; Miller, Nicholas J.; Gu, Xiaochen; Vennerstrom, Jonathan L.

2015-01-01

Creatine ethyl ester hydrochloride (CEE) was synthesized as a prodrug of creatine (CRT) to improve aqueous solubility, gastrointestinal permeability, and ultimately the pharmacodynamics of CRT. We used high-performance liquid chromatography (HPLC) and proton nuclear magnetic resonance (NMR) to characterize the pH-dependent stability of CEE in aqueous solution and compared the permeability of CEE to CRT and creatinine (CRN) across Caco-2 human epithelial cell monolayers and transdermal permeability across porcine skin. CEE was most stable in a strongly acidic condition (half-life = 570 hours at pH 1.0) where it undergoes ester hydrolysis to CRT and ethanol. At pH ≥ 1.0, CEE cyclizes to CRN with the logarithm of the first order rate constant increasing linearly with pH. Above pH 8.0 (half-life = 23 sec) the rate of degradation was too rapid to be determined. The rate of degradation of CEE in cell culture media and simulated intestinal fluid (SIF) was a function of pH and correlated well with the stability in aqueous buffered solutions. The permeability of CEE across Caco-2 monolayers and porcine skin was significantly greater than that of CRT or CRN. The stability of CEE in acidic media together with its improved permeability suggests that CEE has potential for improved oral absorption compared to CRT. PMID:23957855

New insight in quantitative analysis of vascular permeability during immune reaction (Conference Presentation)

NASA Astrophysics Data System (ADS)

Kalchenko, Vyacheslav; Molodij, Guillaume; Kuznetsov, Yuri; Smolyakov, Yuri; Israeli, David; Meglinski, Igor; Harmelin, Alon

2016-03-01

The use of fluorescence imaging of vascular permeability becomes a golden standard for assessing the inflammation process during experimental immune response in vivo. The use of the optical fluorescence imaging provides a very useful and simple tool to reach this purpose. The motivation comes from the necessity of a robust and simple quantification and data presentation of inflammation based on a vascular permeability. Changes of the fluorescent intensity, as a function of time is a widely accepted method to assess the vascular permeability during inflammation related to the immune response. In the present study we propose to bring a new dimension by applying a more sophisticated approach to the analysis of vascular reaction by using a quantitative analysis based on methods derived from astronomical observations, in particular by using a space-time Fourier filtering analysis followed by a polynomial orthogonal modes decomposition. We demonstrate that temporal evolution of the fluorescent intensity observed at certain pixels correlates quantitatively to the blood flow circulation at normal conditions. The approach allows to determine the regions of permeability and monitor both the fast kinetics related to the contrast material distribution in the circulatory system and slow kinetics associated with extravasation of the contrast material. Thus, we introduce a simple and convenient method for fast quantitative visualization of the leakage related to the inflammatory (immune) reaction in vivo.

Influence of Membrane Equivalent Weight and Reinforcement on Ionic Species Crossover in All-Vanadium Redox Flow Batteries.

PubMed

Ashraf Gandomi, Yasser; Aaron, Doug S; Mench, Matthew M

2017-06-06

One of the major sources of lost capacity in all-vanadium redox flow batteries (VRFBs) is the undesired transport (usually called crossover) of water and vanadium ions through the ion-exchange membrane. In this work, an experimental assessment of the impact of ion-exchange membrane properties on vanadium ion crossover and capacity decay of VRFBs has been performed. Two types of cationic membranes (non-reinforced and reinforced) with three equivalent weights of 800, 950 and 1100 g·mol -1 were investigated via a series of in situ performance and capacity decay tests along with ex situ vanadium crossover measurement and membrane characterization. For non-reinforced membranes, increasing the equivalent weight (EW) from 950 to 1100 g·mol -1 decreases the V(IV) permeability by ~30%, but increases the area-specific resistance (ASR) by ~16%. This increase in ASR and decrease in V(IV) permeability was accompanied by increased through-plane membrane swelling. Comparing the non-reinforced with reinforced membranes, membrane reinforcement increases ASR, but V(IV) permeability decreases. It was also shown that there exists a monotonic correlation between the discharge capacity decay over long-term cycling and V(IV) permeability values. Thus, V(IV) permeability is considered a representative diagnostic for assessing the overall performance of a particular ion-exchange membrane with respect to capacity fade in a VRFB.

Influence of Membrane Equivalent Weight and Reinforcement on Ionic Species Crossover in All-Vanadium Redox Flow Batteries

PubMed Central

Ashraf Gandomi, Yasser; Aaron, Doug S.; Mench, Matthew M.

2017-01-01

One of the major sources of lost capacity in all-vanadium redox flow batteries (VRFBs) is the undesired transport (usually called crossover) of water and vanadium ions through the ion-exchange membrane. In this work, an experimental assessment of the impact of ion-exchange membrane properties on vanadium ion crossover and capacity decay of VRFBs has been performed. Two types of cationic membranes (non-reinforced and reinforced) with three equivalent weights of 800, 950 and 1100 g·mol−1 were investigated via a series of in situ performance and capacity decay tests along with ex situ vanadium crossover measurement and membrane characterization. For non-reinforced membranes, increasing the equivalent weight (EW) from 950 to 1100 g·mol−1 decreases the V(IV) permeability by ~30%, but increases the area-specific resistance (ASR) by ~16%. This increase in ASR and decrease in V(IV) permeability was accompanied by increased through-plane membrane swelling. Comparing the non-reinforced with reinforced membranes, membrane reinforcement increases ASR, but V(IV) permeability decreases. It was also shown that there exists a monotonic correlation between the discharge capacity decay over long-term cycling and V(IV) permeability values. Thus, V(IV) permeability is considered a representative diagnostic for assessing the overall performance of a particular ion-exchange membrane with respect to capacity fade in a VRFB. PMID:28587268

Simulation of gas flow in micro-porous media with the regularized lattice Boltzmann method

DOE PAGES

Wang, Junjian; Kang, Qinjun; Wang, Yuzhu; ...

2017-06-01

One primary challenge for prediction of gas flow in the unconventional gas reservoir at the pore-scale such as shale and tight gas reservoirs is the geometric complexity of the micro-porous media. In this paper, a regularized multiple-relaxation-time (MRT) lattice Boltzmann (LB) model is applied to analyze gas flow in 2-dimensional micro-porous medium reconstructed by quartet structure generation set (QSGS) on pore-scale. In this paper, the velocity distribution inside the porous structure is presented and analyzed, and the effects of the porosity and specific surface area on the rarefied gas flow and apparent permeability are examined and investigated. The simulation resultsmore » indicate that the gas exhibits different flow behaviours at various pressure conditions and the gas permeability is strongly related to the pressure. Finally, the increased porosity or the decreased specific surface area leads to the increase of the gas apparent permeability, and the gas flow is more sensitive to the pore morphological properties at low-pressure conditions.« less

Simulation of gas flow in micro-porous media with the regularized lattice Boltzmann method

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Junjian; Kang, Qinjun; Wang, Yuzhu

One primary challenge for prediction of gas flow in the unconventional gas reservoir at the pore-scale such as shale and tight gas reservoirs is the geometric complexity of the micro-porous media. In this paper, a regularized multiple-relaxation-time (MRT) lattice Boltzmann (LB) model is applied to analyze gas flow in 2-dimensional micro-porous medium reconstructed by quartet structure generation set (QSGS) on pore-scale. In this paper, the velocity distribution inside the porous structure is presented and analyzed, and the effects of the porosity and specific surface area on the rarefied gas flow and apparent permeability are examined and investigated. The simulation resultsmore » indicate that the gas exhibits different flow behaviours at various pressure conditions and the gas permeability is strongly related to the pressure. Finally, the increased porosity or the decreased specific surface area leads to the increase of the gas apparent permeability, and the gas flow is more sensitive to the pore morphological properties at low-pressure conditions.« less

Micromachined evaporators for AMTEC cells

DOE Office of Scientific and Technical Information (OSTI.GOV)

Izenson, M.G.; Crowley, C.J.

1996-12-31

To achieve high cell efficiency and reliability, the capillary pumping system for Alkali Metal Thermal to Electric Conversion (AMTEC) must have three key characteristics: (1) very small pores to achieve a high capillary pumping head, (2) high permeability for the flow of liquid sodium to minimize internal losses, and (3) be made from a material that is exceptionally stable at high temperatures in a sodium environment. The authors have developed micromachining techniques to manufacture high performance evaporators for AMTEC cells. The evaporators have been fabricated from stainless steel, molybdenum, and a niobium alloy (Nb-1Zr). The regular, micromachined structure leads tomore » very high capillary pumping head with high permeability for liquid flow. Data from tests performed with common fluids at room temperature characterize the capillary pumping head and permeability of these structures. Three micromachined evaporators have been built into AMTEC cells and operated at temperatures up to 1,100 K. Results from these tests confirm the excellent pumping capabilities of the micromachined evaporators.« less

Highly predictive and interpretable models for PAMPA permeability.

PubMed

Sun, Hongmao; Nguyen, Kimloan; Kerns, Edward; Yan, Zhengyin; Yu, Kyeong Ri; Shah, Pranav; Jadhav, Ajit; Xu, Xin

2017-02-01

Cell membrane permeability is an important determinant for oral absorption and bioavailability of a drug molecule. An in silico model predicting drug permeability is described, which is built based on a large permeability dataset of 7488 compound entries or 5435 structurally unique molecules measured by the same lab using parallel artificial membrane permeability assay (PAMPA). On the basis of customized molecular descriptors, the support vector regression (SVR) model trained with 4071 compounds with quantitative data is able to predict the remaining 1364 compounds with the qualitative data with an area under the curve of receiver operating characteristic (AUC-ROC) of 0.90. The support vector classification (SVC) model trained with half of the whole dataset comprised of both the quantitative and the qualitative data produced accurate predictions to the remaining data with the AUC-ROC of 0.88. The results suggest that the developed SVR model is highly predictive and provides medicinal chemists a useful in silico tool to facilitate design and synthesis of novel compounds with optimal drug-like properties, and thus accelerate the lead optimization in drug discovery. Copyright © 2016 Elsevier Ltd. All rights reserved.

Structure/permeability relationships of silicon-containing polyimides

NASA Technical Reports Server (NTRS)

Stern, S. A.; Vaidyanathan, R.; Pratt, J. R.

1989-01-01

The permeability to H2, O2, N2, CO2 and CH4 of three silicone-polyimide random copolymers and two polyimides containing silicon atoms in their backbone chains, was determined at 35.0 C and at pressures up to about 120 psig (approximately 8.2 atm). The copolymers contained different amounts of BPADA-m-PDA and amine-terminated poly (dimethyl siloxane) and also had different numbers of siloxane linkages in their silicone component. The polyimides containing silicon atoms (silicon-modified polyimides) were SiDA-4,4'-ODA and SiDA-p-PDA. The gas permeability and selectivity of the copolymers are more similar to those of their silicone component than of the polyimide component. By contrast, the permeability and selectivity of the silicon-modified polyimides are more similar to those of their parent polyimides, PMDA-4,4'-ODA and SiDA-p-PDA. The substitution of SiDA for the PMDA moiety in a polyimide appears to result in a significant increase in gas permeability, without a correspondingly large decrease in selectivity. The potential usefulness of the above polymers and copolymers as gas separation membranes is discussed.

Preparation of Low fouling Polyethersulfone Membranes by Simultaneously Phase Separation and Redox Polymerization

NASA Astrophysics Data System (ADS)

Roihatin, A.; Susanto, H.

2017-05-01

This paper presents preparation of low fouling PES membranes by non solvent induced phase separation (NIPS) coupled with redox polymerization. The membrane characterization included water permeability, morphology structure (by SEM) and surface chemistry (by FTIR). Water permeability measurements showed thatthe membranes have water permeability within the range 10-50 L/h.m2.bar. Addition of PEG dan PEGMA intopolymer solution increased water permeability, whereas blending redox initiator and crosslinker, MBAA in polymer solution decreased water permeability. Surface morfology of membranes by SEM showed that unmodified PES membrane had smaller pore size than PEG or PEGMA modified PES membranes. Furthermore, PES-PEG or PES-PEGMA membranes modified by blending with redox initiator and MBAA as crosslinker showed smaller pore size than unmodified membrane. FTIR analysis showed that all membranes have typical spectraof PES polymer; however no additional peak was observed forthe membranes prepared with addition of PEG/PEGMA, initiator redox and also crosslinker. The addition of PEG/PEGMA, redox initiator and crosslinker resulted in membranes with high rejection and an acceptable flux as well as more stable due to relatively high fouling resistance.

Field determination of vertical permeability to air in the unsaturated zone

USGS Publications Warehouse

Weeks, Edwin P.

1978-01-01

The vertical permeability to air of layered materials in the unsaturated zone may be determined from air pressure data obtained at depth during a period when air pressure is changing at land surface. Such data may be obtained by monitoring barometric pressure with a microbarograph or surveying altimeter and simultaneously measuring down-hole pneumatic head differences in specially constructed piezometers. These data, coupled with air-filled porosity data from other sources, may be compared with the results of electric-analog or numerical solution of the one-dimensional diffusion equation to make a trial-and-error determination of the air permeability for each layer. The permeabilities to air may in turn be converted to equivalent hydraulic conductivity values if the materials are well drained, are permeable enough that the Klinkenberg effect is small, and are structurally unaffected by wetting. The method offers potential advantages over present methods to evaluate sites for artificial recharge by spreading; to evaluate ground-water pollution hazards from feedlots, sanitary landfills , and land irrigated with sewage effluent; and to evaluate sites for temporary storage of gas in the unsaturated zone. (Woodard-USGS)

Surface nano-structure of polyamide 6 film by hydrothermal treatment

NASA Astrophysics Data System (ADS)

Wang, Xiaosong; Wang, Zhiliang; Liang, Songmiao; Jin, Yan; Lotz, Bernard; Yang, Shuguang

2018-06-01

Polyamide 6 (PA 6) melts and dissolves in super-heated water when T > 160 °C. Commercial PA 6 films were treated in super-heated water at 140 °C < T < 160 °C, i.e. below melting. Morphology, thermal behavior, mechanical properties, oxygen permeability and transparency of the film before and after hydrothermal treatment are investigated. After hydrothermal treatment, the melting temperature, crystallinity, elongation at break and toughness increase, whereas the strength decreases. The transparency and oxygen permeability decrease slightly. More interestingly, the hydrothermal treatment generates on the film surface a nano-structured layer 100 nm thick, which greatly improves adhesion and printing performance.

Creation of Novel Cores for β-Secretase (BACE-1) Inhibitors: A Multiparameter Lead Generation Strategy

PubMed Central

2014-01-01

In order to find optimal core structures as starting points for lead optimization, a multiparameter lead generation workflow was designed with the goal of finding BACE-1 inhibitors as a treatment for Alzheimer’s disease. De novo design of core fragments was connected with three predictive in silico models addressing target affinity, permeability, and hERG activity, in order to guide synthesis. Taking advantage of an additive SAR, the prioritized cores were decorated with a few, well-characterized substituents from known BACE-1 inhibitors in order to allow for core-to-core comparisons. Prediction methods and analyses of how physicochemical properties of the core structures correlate to in vitro data are described. The syntheses and in vitro data of the test compounds are reported in a separate paper by Ginman et al. [J. Med. Chem.2013, 56, 4181–4205]. The affinity predictions are described in detail by Roos et al. [J. Chem. Inf.2014, DOI: 10.1021/ci400374z]. PMID:24900855

Creation of Novel Cores for β-Secretase (BACE-1) Inhibitors: A Multiparameter Lead Generation Strategy.

PubMed

Viklund, Jenny; Kolmodin, Karin; Nordvall, Gunnar; Swahn, Britt-Marie; Svensson, Mats; Gravenfors, Ylva; Rahm, Fredrik

2014-04-10

In order to find optimal core structures as starting points for lead optimization, a multiparameter lead generation workflow was designed with the goal of finding BACE-1 inhibitors as a treatment for Alzheimer's disease. De novo design of core fragments was connected with three predictive in silico models addressing target affinity, permeability, and hERG activity, in order to guide synthesis. Taking advantage of an additive SAR, the prioritized cores were decorated with a few, well-characterized substituents from known BACE-1 inhibitors in order to allow for core-to-core comparisons. Prediction methods and analyses of how physicochemical properties of the core structures correlate to in vitro data are described. The syntheses and in vitro data of the test compounds are reported in a separate paper by Ginman et al. [J. Med. Chem. 2013, 56, 4181-4205]. The affinity predictions are described in detail by Roos et al. [J. Chem. Inf. 2014, DOI: 10.1021/ci400374z].

Role of Hydrogen and Structure on CMSX-2

NASA Technical Reports Server (NTRS)

Baker, C. L.; Chene, J.; Kromp, W.; Pinczolitis, H.; Bernstein, S. M.; Williams, J. C.

1985-01-01

The goal was to characterize and understand the detailed effect of hydrogen on the tensile and fatigue behavior of single crystals of CMSX-2. Specimens were solutionized, air cooled, and then aged in one of two ways. The resultant macro and microstructure included a pronounced dendritic structure with numerous low angle boundaries in the interdendritic region and on the average a high level of porosity with a large variation in size and distribution. Hydrogen permeability and diffusivity in this material was found to be very low at room temperature. Hydrogen concentration studies on thin samples yielded values significantly higher than found for similar charging conditions in nickel and stainless steels. The tensile mechanical properties were found to depend on hydrogen concentration. SEM observations of the brittle subsurface zone revealed a strong correlation between crack initiation sites and voids just beneath the surface. The hollow and solid samples were compared to better understand the influence of increased charged volume on the fatigue behavior.

High frequency permeability of Fe-Cu-Nb-Si-B nanocrystalline flakes with the distribution of shape anisotropy fields

NASA Astrophysics Data System (ADS)

Luo, Xing; Wu, Yanhui; Han, Mangui; Deng, Longjiang

2018-04-01

Fe-Cu-Nb-Si-B flakes with multiphase nanostructures have been obtained by annealing the amorphous ribbon and subsequently ball milled for 30 h. The crystal structures have been examined by X-ray diffraction pattern and Mössbauer spectrum. The results show that the particles annealed at 900 °C are made up of amorphous ferromagnetic phase, α-Fe3Si ferromagnetic phase and Fe2B phase, and the average hyperfine magnetic field (HBhf) of particles is 24.02 T. Meanwhile, the relationships between the structure and the high frequency permeability have been studied. Compared with particles annealed at 600 °C, particles annealed at 900 °C exhibit higher saturation magnetization, which is evidenced by the larger HBhf. Also, three magnetic loss peaks in a permeability spectrum have been observed for the particles annealed at 900 °C. The natural resonance frequencies are calculated, which are in good agreement with the experimental resonance peaks. The origin of the multiple magnetic loss peaks can be explained from the perspective of the distribution of shape anisotropy fields which is caused by multiple phase structure.

An integrated simulator of structure and anisotropic flow in gas diffusion layers with hydrophobic additives

NASA Astrophysics Data System (ADS)

Burganos, Vasilis N.; Skouras, Eugene D.; Kalarakis, Alexandros N.

2017-10-01

The lattice-Boltzmann (LB) method is used in this work to reproduce the controlled addition of binder and hydrophobicity-promoting agents, like polytetrafluoroethylene (PTFE), into gas diffusion layers (GDLs) and to predict flow permeabilities in the through- and in-plane directions. The present simulator manages to reproduce spreading of binder and hydrophobic additives, sequentially, into the neat fibrous layer using a two-phase flow model. Gas flow simulation is achieved by the same code, sidestepping the need for a post-processing flow code and avoiding the usual input/output and data interface problems that arise in other techniques. Compression effects on flow anisotropy of the impregnated GDL are also studied. The permeability predictions for different compression levels and for different binder or PTFE loadings are found to compare well with experimental data for commercial GDL products and with computational fluid dynamics (CFD) predictions. Alternatively, the PTFE-impregnated structure is reproduced from Scanning Electron Microscopy (SEM) images using an independent, purely geometrical approach. A comparison of the two approaches is made regarding their adequacy to reproduce correctly the main structural features of the GDL and to predict anisotropic flow permeabilities at different volume fractions of binder and hydrophobic additives.

Arsenite induces endothelial cell permeability increase through a reactive oxygen species-vascular endothelial growth factor pathway.

PubMed

Bao, Lingzhi; Shi, Honglian

2010-11-15

As a potent environmental oxidative stressor, arsenic exposure has been reported to exacerbate cardiovascular diseases and increase vascular endothelial cell monolayer permeability. However, the underlying mechanism of this effect is not well understood. In this paper, we test our hypothesis that reactive oxygen species (ROS)-induced vascular endothelial growth factor (VEGF) expression may play an important role in an arsenic-caused increase of endothelial cell monolayer permeability. The mouse brain vascular endothelial cell bEnd3 monolayer was exposed to arsenite for 1, 3, and 6 days. The monolayer permeability, VEGF protein release, and ROS generation were determined. In addition, VE-cadherin and zonula occludens-1 (ZO-1), two membrane structure proteins, were immunostained to elucidate the effects of arsenite on the cell-cell junction. The roles of ROS and VEGF in arsenite-induced permeability was determined by inhibiting ROS with antioxidants and immuno-depleting VEGF with a VEGF antibody. We observed that arsenite increased bEnd3 monolayer permeability, elevated the production of cellular ROS, and increased VEGF release. VE-cadherin and ZO-1 disruptions were also found in cells treated with arsenite. Furthermore, both antioxidant (N-acetyl cysteine and tempol) and the VEGF antibody treatments significantly lowered the arsenite-induced permeability of the bEnd3 monolayer as well as VEGF expression. VE-cadherin and ZO-1 disruptions were also diminished by N-acetyl cysteine and the VEGF antibody. Our data suggest that the increase in VEGF expression caused by ROS may play an important role in the arsenite-induced increase in endothelial cell permeability.

Correlative study of functional and structural regeneration of urothelium after chitosan-induced injury.

PubMed

Erman, Andreja; Kerec Kos, Mojca; Žakelj, Simon; Resnik, Nataša; Romih, Rok; Veranič, Peter

2013-11-01

High transepithelial electrical resistance (TEER) demonstrates a functional permeability barrier of the normal urothelium, which is maintained by a layer of highly differentiated superficial cells. When the barrier is challenged, a quick regeneration is induced. We used side-by-side diffusion chambers as an ex vivo system to determine the time course of functional and structural urothelial regeneration after chitosan-induced injury. The exposure of the urothelium to chitosan caused a 60 % decrease in TEER, the exposure of undifferentiated urothelial cells to the luminal surface and leaky tight junctions. During the regeneration period (350 min), TEER recovered to control values after approximately 200 min, while structural regeneration continued until 350 min after injury. The tight junctions are the earliest and predominant component of the barrier to appear, while complete barrier regeneration is achieved by delayed superficial cell terminal differentiation. The barrier function and the structure of untreated urothelium were unaffected in side-by-side diffusion chambers for at least 6 h. The urinary bladder tissue excised from an animal thus retains the ability to maintain and restore the transepithelial barrier and cellular ultrastructure for a sufficient period to allow for studies of regeneration in ex vivo conditions.

Nε-Acryloyllysine Piperazides as Irreversible Inhibitors of Transglutaminase 2: Synthesis, Structure-Activity Relationships, and Pharmacokinetic Profiling.

PubMed

Wodtke, Robert; Hauser, Christoph; Ruiz-Gómez, Gloria; Jäckel, Elisabeth; Bauer, David; Lohse, Martin; Wong, Alan; Pufe, Johanna; Ludwig, Friedrich-Alexander; Fischer, Steffen; Hauser, Sandra; Greif, Dieter; Pisabarro, M Teresa; Pietzsch, Jens; Pietsch, Markus; Löser, Reik

2018-05-24

Transglutaminase 2 (TGase 2)-catalyzed transamidation represents an important post-translational mechanism for protein modification with implications in physiological and pathophysiological conditions, including fibrotic and neoplastic processes. Consequently, this enzyme is considered a promising target for the diagnosis of and therapy for these diseases. In this study, we report on the synthesis and kinetic characterization of N ε -acryloyllysine piperazides as irreversible inhibitors of TGase 2. Systematic structural modifications on 54 new compounds were performed with a major focus on fluorine-bearing substituents due to the potential of such compounds to serve as radiotracer candidates for positron emission tomography. The determined inhibitory activities ranged from 100 to 10 000 M -1 s -1 , which resulted in comprehensive structure-activity relationships. Structure-activity correlations using various substituent parameters accompanied by covalent docking studies provide an advanced understanding of the molecular recognition for this inhibitor class within the active site of TGase 2. Selectivity profiling of selected compounds for other transglutaminases demonstrated an excellent selectivity toward transglutaminase 2. Furthermore, an initial pharmacokinetic profiling of selected inhibitors was performed, including the assessment of potential membrane permeability and liver microsomal stability.

Parameterization and Modeling of Coupled Heat and Mass Transport in the Vadose Zone

NASA Astrophysics Data System (ADS)

Mohanty, B.; Yang, Z.

2016-12-01

The coupled heat and mass transport in the vadose zone is essentially a multiphysics issue. Addressing this issue appropriately has remarkable impacts on soil physical, chemical and biological processes. To data, most coupled heat and water transport modeling has focused on the interactions between liquid water, water vapor and heat transport in homogeneous and layered soils. Comparatively little work has been done on structured soils where preferential infiltration and evaporation flow occurs. Moreover, the traditional coupled heat and water model usually neglects the nonwetting phase air flow, which was found to be significant in the state-of-the-art modeling framework for coupled heat and water transport investigation. However, the parameterizations for the nonwetting phase air permeability largely remain elusive so far. In order to address the above mentioned limitations, this study aims to develop and validate a predictive multiphysics modeling framework for coupled soil heat and water transport in the heterogeneous shallow subsurface. To this end, the following research work is specifically conducted: (a) propose an improved parameterization to better predict the nonwetting phase relative permeability; (b) determine the dynamics, characteristics and processes of simultaneous soil moisture and heat movement in homogeneous and layered soils; and (c) develop a nonisothermal dual permeability model for heterogeneous structured soils. The results of our studies showed that: (a) the proposed modified nonwetting phase relative permeability models are much more accurate, which can be adopted for better parameterization in the subsequent nonisothermal two phase flow models; (b) the isothermal liquid film flow, nonwetting phase gas flow and liquid-vapor phase change non-equilibrium effects are significant in the arid and semiarid environments (Riverside, California and Audubon, Arizona); and (c) the developed nonisothermal dual permeability model is capable of characterizing the preferential evaporation path in the heterogeneous structured soils due to the fact that the capillary forces divert the pore water from coarse-textured soils (high temperature region) toward the fine-textured soils (low temperature region).

Effect of CH4 on the CO2 breakthrough pressure and permeability of partially saturated low-permeability sandstone in the Ordos Basin, China

NASA Astrophysics Data System (ADS)

Zhao, Yan; Yu, Qingchun

2018-01-01

The behavior of CO2 that coexists with CH4 and the effect of CH4 on the CO2 stream need to be deeply analyzed and studied, especially in the presence of water. Our previous studies investigated the breakthrough pressure and permeability of pure CO2 in five partially saturated low-permeability sandstone core samples from the Ordos Basin, and we concluded that rocks with a small pore size and low permeability show considerable sealing capacity even under unsaturated conditions. In this paper, we selected three of these samples for CO2-CH4 gas-mixture breakthrough experiments under various degrees of water saturation. The breakthrough experiments were performed by increasing the gas pressure step by step until breakthrough occurred. Then, the effluent gas mixture was collected for chromatographic partitioning analysis. The results indicate that CH4 significantly affects the breakthrough pressure and permeability of CO2. The presence of CH4 in the gas mixture increases the interfacial tension and, thus, the breakthrough pressure. Therefore, the injected gas mixture that contains the highest (lowest) mole fraction of CH4 results in the largest (smallest) breakthrough pressure. The permeability of the gas mixture is greater than that for pure CO2 because of CH4, and the effective permeability decreases with increased breakthrough pressure. Chromatographic partitioning of the effluent mixture gases indicates that CH4 breaks through ahead of CO2 as a result of its weaker solubility in water. Correlations are established between (1) the breakthrough pressure and water saturation, (2) the effective permeability and water saturation, (3) the breakthrough pressure and effective permeability, and (4) the mole fraction of CO2/CH4 in the effluent mixture gases and water saturation. These results deepen our understanding of the multi-phase flow behavior in the porous media under unsaturated conditions, which have implications for formulating emergency response plans for gas leakage into unsaturated zones. Finally, knowing the flow characteristic of gas mixture can guide CO2 storage, CO2-EOR and CO2-ECBM projects. Future studies should pay attention to the effects of saline water with different salt types and concentrations on the multi-phase flow behavior with applications to geological CO2 storage and energy storage using CH4.

Compaction and gas loss in welded pyroclastic deposits as revealed by porosity, permeability, and electrical conductivity measurements of the Shevlin Park Tuff

USGS Publications Warehouse

Wright, Heather M.; Cashman, Katharine V.

2014-01-01

Pyroclastic flows produced by large volcanic eruptions commonly densify after emplacement. Processes of gas escape, compaction, and welding in pyroclastic-flow deposits are controlled by the physical and thermal properties of constituent material. Through measurements of matrix porosity, permeability, and electrical conductivity, we provide a framework for understanding the evolution of pore structure during these processes. Using data from the Shevlin Park Tuff in central Oregon, United States, and from the literature, we find that over a porosity range of 0%–70%, matrix permeability varies by almost 10 orders of magnitude (from 10–20 to 10–11 m2), with over three orders of magnitude variation at any given porosity. Part of the variation at a given porosity is due to permeability anisotropy, where oriented core samples indicate higher permeabilities parallel to foliation (horizontally) than perpendicular to foliation (vertically). This suggests that pore space is flattened during compaction, creating anisotropic crack-like networks, a geometry that is supported by electrical conductivity measurements. We find that the power law equation: k1 = 1.3 × 10–21 × ϕ5.2 provides the best approximation of dominant horizontal gas loss, where k1 = permeability, and ϕ = porosity. Application of Kozeny-Carman fluid-flow approximations suggests that permeability in the Shevlin Park Tuff is controlled by crack- or disk-like pore apertures with minimum widths of 0.3 and 7.5 μm. We find that matrix permeability limits compaction over short times, but deformation is then controlled by competition among cooling, compaction, water resorption, and permeable gas escape. These competing processes control the potential for development of overpressure (and secondary explosions) and the degree of welding in the deposit, processes that are applicable to viscous densification of volcanic deposits in general. Further, the general relationships among porosity, permeability, and pore geometry are relevant for flow of any fluid through an ignimbritic host.

Modeling the formation of porphyry-copper ores

USGS Publications Warehouse

Ingebritsen, Steven E.

2012-01-01

Porphyry-copper ore systems, the source of much of the world's copper and molybdenum, form when metal-bearing fluids are expelled from shallow, degassing magmas. On page 1613 of this issue, Weis et al. (1) demonstrate that self-organizing processes focus metal deposition. Specifically, their simulation studies indicate that ores develop as consequences of dynamic variations in rock permeability driven by injection of volatile species from rising magmas. Scenarios with a static permeability structure could not reproduce key field observations, whereas dynamic permeability responses to magmatic-fluid injection localized a metal-precipitation front where enrichment by a factor of 103 could be achieved [for an overview of their numerical-simulation model CSMP++, see (2)].

Modeling the Relationship Between Porosity and Permeability During Oxidation of Ablative Materials

NASA Technical Reports Server (NTRS)

Thornton, John M.; Panerai, Francesco; Ferguson, Joseph C.; Borner, Arnaud; Mansour, Nagi N.

2017-01-01

The ablative materials used in thermal protection systems (TPS) undergo oxidation during atmospheric entry which leads to an in-depth change in both permeability and porosity. These properties have a significant affect on heat transfer in a TPS during entry. X-ray micro-tomography has provided 3D images capturing the micro-structure of TPS materials. In this study, we use micro-tomography based simulations to create high-fidelity models relating permeability to porosity during oxidation of FiberForm, the carbon fiber preform of the Phenolic Impregnated Carbon Ablator (PICA) often used as a TPS material. The goal of this study is to inform full-scale models and reduce uncertainty in TPS modeling.

Ultrasound-enhanced delivery of antibiotics and anti-inflammatory drugs into the eye.

PubMed

Nabili, Marjan; Patel, Hetal; Mahesh, Sankaranarayana P; Liu, Ji; Geist, Craig; Zderic, Vesna

2013-04-01

Delivery of sufficient amounts of therapeutic drugs into the eye is often a challenging task. In this study, ultrasound application (frequencies of 400 KHz to 1 MHz, intensities of 0.3-1.0 W/cm(2) and exposure duration of 5 min) was investigated to overcome the barrier properties of cornea, which is a typical route for topical administration of ophthalmic drugs. Permeability of ophthalmic drugs, tobramycin and dexamethasone and sodium fluorescein, a drug-mimicking compound, was studied in ultrasound- and sham-treated rabbit corneas in vitro using a standard diffusion cell setup. Light microscopy observations were used to determine ultrasound-induced structural changes in the cornea. For tobramycin, an increase in permeability for ultrasound- and sham-treated corneas was not statistically significant. Increase of 46%-126% and 32%-109% in corneal permeability was observed for sodium fluorescein and dexamethasone, respectively, with statistical significance (p < 0.05) achieved at all treatment parameter combinations (compared with sham treatments) except for 1-MHz ultrasound applications for dexamethasone experiments. This permeability increase was highest at 400 kHz and appeared to be higher at higher intensities applied. Histologic analysis showed structural changes that were limited to epithelial layers of cornea. In summary, ultrasound application provided enhancement of drug delivery, increasing the permeability of the cornea for the anti-inflammatory ocular drug dexamethasone. Future investigations are needed to determine the effectiveness and safety of this application in in vivo long-term survival studies. Copyright © 2013 World Federation for Ultrasound in Medicine & Biology. Published by Elsevier Inc. All rights reserved.

Microbial mineral illization of montmorillonite in low-permeability oil reservoirs for microbial enhanced oil recovery.

PubMed

Cui, Kai; Sun, Shanshan; Xiao, Meng; Liu, Tongjing; Xu, Quanshu; Dong, Honghong; Wang, Di; Gong, Yejing; Sha, Te; Hou, Jirui; Zhang, Zhongzhi; Fu, Pengcheng

2018-05-11

Microbial mineral illization has been investigated for its role in the extraction and recovery of metals from ores. Here we report our application of mineral bioillization for the microbial enhanced oil recovery in low-permeability oil reservoirs. It aimed to reveal the etching mechanism of the four Fe (III)-reducing microbial strains under anaerobic growth conditions on the Ca-montmorillonite. The mineralogical characterization of the Ca-montmorillonite was performed by Fourier transform infrared spectroscopy, X-ray powder diffraction, scanning electron microscopy and energy dispersive spectrometer. Results showed that the microbial strains could efficiently reduce Fe (III) at an optimal rate of 71 %, and alter the crystal lattice structure of the lamella to promote the interlayer cation exchange, and to efficiently inhibit the Ca-montmorillonite swelling at an inhibitory rate of 48.9 %. Importance Microbial mineral illization is ubiquitous in the natural environment. Microbes in low-permeability reservoirs are able to enable the alteration of the structure and phase of the Fe-poor minerals by reducing Fe (III) and inhibiting clay swelling which is still poorly studied. This study aimed to reveal the interaction mechanism between Fe (III)-reducing bacterial strains and Ca-montmorillonite under anaerobic atmosphere, and to investigate the extent and rates of Fe (III) reduction and phase changes with their activities. Application of Fe (III)-reducing bacteria will provide a new way to inhibit clay swelling, to elevate reservoir permeability, and to reduce pore throat resistance after water flooding for enhanced oil recovery in low-permeability reservoirs. Copyright © 2018 American Society for Microbiology.

Low resistivity and permeability in actively deforming shear zones on the San Andreas Fault at SAFOD

USGS Publications Warehouse

Morrow, Carolyn A.; Lockner, David A.; Hickman, Stephen H.

2015-01-01

The San Andreas Fault Observatory at Depth (SAFOD) scientific drillhole near Parkfield, California crosses the San Andreas Fault at a depth of 2.7 km. Downhole measurements and analysis of core retrieved from Phase 3 drilling reveal two narrow, actively deforming zones of smectite-clay gouge within a roughly 200 m-wide fault damage zone of sandstones, siltstones and mudstones. Here we report electrical resistivity and permeability measurements on core samples from all of these structural units at effective confining pressures up to 120 MPa. Electrical resistivity (~10 ohm-m) and permeability (10-21 to 10-22 m2) in the actively deforming zones were one to two orders of magnitude lower than the surrounding damage zone material, consistent with broader-scale observations from the downhole resistivity and seismic velocity logs. The higher porosity of the clay gouge, 2 to 8 times greater than that in the damage zone rocks, along with surface conduction were the principal factors contributing to the observed low resistivities. The high percentage of fine-grained clay in the deforming zones also greatly reduced permeability to values low enough to create a barrier to fluid flow across the fault. Together, resistivity and permeability data can be used to assess the hydrogeologic characteristics of the fault, key to understanding fault structure and strength. The low resistivities and strength measurements of the SAFOD core are consistent with observations of low resistivity clays that are often found in the principal slip zones of other active faults making resistivity logs a valuable tool for identifying these zones.

Dynamic Contrast-Enhanced Magnetic Resonance Imaging Reveals Stress-Induced Angiogenesis in MCF7 Human Breast Tumors

NASA Astrophysics Data System (ADS)

Furman-Haran, Edna; Margalit, Raanan; Grobgeld, Dov; Degani, Hadassa

1996-06-01

The mechanism of contrast enhancement of tumors using magnetic resonance imaging was investigated in MCF7 human breast cancer implanted in nude mice. Dynamic contrast-enhanced images recorded at high spatial resolution were analyzed by an image analysis method based on a physiological model, which included the blood circulation, the tumor, the remaining tissues, and clearance via the kidneys. This analysis enabled us to map in rapidly enhancing regions within the tumor, the capillary permeability factor (capillary permeability times surface area per voxel volume) and the fraction of leakage space. Correlation of these maps with T2-weighted spin echo images, with histopathology, and with immunohistochemical staining of endothelial cells demonstrated the presence of dense permeable microcapillaries in the tumor periphery and in intratumoral regions that surrounded necrotic loci. The high leakage from the intratumoral permeable capillaries indicated an induction of a specific angiogenic process associated with stress conditions that cause necrosis. This induction was augmented in tumors responding to tamoxifen treatment. Determination of the distribution and extent of this stress-induced angiogenic activity by contrast-enhanced MRI might be of diagnostic and of prognostic value.

Transport of surface engineered polyamidoamine (PAMAM) dendrimers across IPEC-J2 cell monolayers.

PubMed

Pisal, Dipak S; Yellepeddi, Venkata K; Kumar, Ajay; Palakurthi, Srinath

2008-11-01

The aim of our study was to prepare arginine-and ornithine-conjugated Polyamidoamine (PAMAM) dendrimers and study their permeability across IPEC-J2 cell monolayers, a new intestinal cell line model for drug absorption studies. Arginine and ornithine were conjugated to the amine terminals of the PAMAM(G4) dendrimers by Fmoc synthesis. The apical-to-basolateral (AB) and basolateral-to-apical (BA) apparent permeability coefficients (P(app)) for the PAMAM dendrimers increased by conjugating the dendrimers with both of these polyamines. The enhancement in permeability was dependent on the dendrimer concentration and duration of incubation. Correlation between monolayer permeability and the decrease in transepithelial electrical resistance (TEER) with the PAMAM dendrimers and the polyamine-conjugated dendrimers suggests that paracellular transport is one of the mechanisms of transport across the epithelial cells. Cytotoxicity of these surface-modified dendrimers was evaluated in IPEC-J2 cells by MTT (methylthiazoletetrazolium) assay. Arginine-conjugated dendrimers were insignificantly more toxic than PAMAM dendrimer as well as ornithine-conjugated dendrimers. Though investigations on the possible involvement of other transport mechanisms are in progress, results of the present study suggest the potential of dendrimer-polyamine conjugates as the carriers for antigen/drug delivery through the oral mucosa.

Deepwater Gulf of Mexico turbidites -- Compaction effects on porosity and permeability

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ostermeier, R.M.

1995-06-01

The deepwater Gulf of Mexico is now a major area of activity for the US oil industry. Compaction causes particular concern because most prospective deepwater reservoirs are highly geo-pressured and many have limited aquifer support; water injection may also be problematic. To address some of the issues associated with compaction, the authors initiated a special core-analysis program to study compaction effects on turbidite sand porosity and permeability specifically. This program also addressed a number of subsidiary but no less important issues, such as sample characterization and quality, sample preparation, and test procedures. These issues are particularly pertinent, because Gulf ofmore » Mexico turbidites are generally unconsolidated, loose sands, and are thus susceptible to a whole array of potentially serious core-disturbing processes. One key result of the special core analysis program is that turbidite compressibilities exhibit large variations in both magnitude and stress dependence. These variations correlate with creep response in the laboratory measurements. The effects of compaction on permeability are significant. To eliminate complicating effects caused by fines movement, the authors made oil flow measurements at initial water saturation. The measurements indicate compaction reduces permeability four to five times more than porosity on a relative basis.« less

Thermodynamic Modeling of Gas Transport in Glassy Polymeric Membranes.

PubMed

Minelli, Matteo; Sarti, Giulio Cesare

2017-08-19

Solubility and permeability of gases in glassy polymers have been considered with the aim of illustrating the applicability of thermodynamically-based models for their description and prediction. The solubility isotherms are described by using the nonequilibrium lattice fluid (NELF) (model, already known to be appropriate for nonequilibrium glassy polymers, while the permeability isotherms are described through a general transport model in which diffusivity is the product of a purely kinetic factor, the mobility coefficient, and a thermodynamic factor. The latter is calculated from the NELF model and mobility is considered concentration-dependent through an exponential relationship containing two parameters only. The models are tested explicitly considering solubility and permeability data of various penetrants in three glassy polymers, PSf, PPh and 6FDA-6FpDA, selected as the reference for different behaviors. It is shown that the models are able to calculate the different behaviors observed, and in particular the permeability dependence on upstream pressure, both when it is decreasing as well as when it is increasing, with no need to invoke the onset of additional plasticization phenomena. The correlations found between polymer and penetrant properties with the two parameters of the mobility coefficient also lead to the predictive ability of the transport model.

Electroporation-assisted discrimination of normal, benign and cancerous human gastric tissues by OCT and diffuse reflectance spectra images

NASA Astrophysics Data System (ADS)

Li, Caiyun; Wei, Huajiang; Zhao, Yanping; Wu, Guoyong; Gu, Huaimin; Guo, Zhouyi; Yang, Hongqin; He, Yonghong; Xie, Shusen

2018-07-01

The purpose of this study is to illustrate experimentally the optical coherence tomography (OCT) signal slope and diffuse reflectance (DR) spectra of 30% and 80% glycerol combined with electroporation (EP) diffusion in normal, benign and cancerous human gastric tissues in vitro. The results of OCT showed that the permeability coefficients of 80% and 30% glycerol (both with and without EP) have the following trend: human cancerous gastric tissue  >  human benign gastric tissue  >  human normal gastric tissue under the same conditions. The permeability coefficient of the 30% glycerol group is larger than that of the 80% glycerol group under the same circumstances; the permeability coefficient of glycerol combined with the EP group is larger than that without the EP group under the same conditions. The permeability coefficient and the reduction of the DR spectra have perfect linear correlation (R2  =  0.9745). The research results suggest that OCT and the DR spectra combined with an optical clearing agent (glycerol) and the EP method can potentially become a powerful tool for the early diagnosis and monitoring of human gastric cancer.

Thermodynamic Modeling of Gas Transport in Glassy Polymeric Membranes

PubMed Central

Minelli, Matteo; Sarti, Giulio Cesare

2017-01-01

Solubility and permeability of gases in glassy polymers have been considered with the aim of illustrating the applicability of thermodynamically-based models for their description and prediction. The solubility isotherms are described by using the nonequilibrium lattice fluid (NELF) (model, already known to be appropriate for nonequilibrium glassy polymers, while the permeability isotherms are described through a general transport model in which diffusivity is the product of a purely kinetic factor, the mobility coefficient, and a thermodynamic factor. The latter is calculated from the NELF model and mobility is considered concentration-dependent through an exponential relationship containing two parameters only. The models are tested explicitly considering solubility and permeability data of various penetrants in three glassy polymers, PSf, PPh and 6FDA-6FpDA, selected as the reference for different behaviors. It is shown that the models are able to calculate the different behaviors observed, and in particular the permeability dependence on upstream pressure, both when it is decreasing as well as when it is increasing, with no need to invoke the onset of additional plasticization phenomena. The correlations found between polymer and penetrant properties with the two parameters of the mobility coefficient also lead to the predictive ability of the transport model. PMID:28825619

Distribution of effluent injected into the Boulder Zone of the Floridan aquifer system at the North District Wastewater Treatment Plant, southeastern Florida, 1997–2011

USGS Publications Warehouse

King, Jeffrey N.; Decker, Jeremy D.

2018-02-09

Nonhazardous, secondarily treated, domestic wastewater (effluent) has been injected about 1 kilometer below land surface into the Boulder Zone of the Floridan aquifer system at the North District Wastewater Treatment Plant in southeastern Florida. The Boulder Zone contains saline, nonpotable water. Effluent transport out of the injection zone is a risk of underground effluent injection. At the North District Wastewater Treatment Plant, injected effluent was detected outside the Boulder Zone. The U.S. Geological Survey, in cooperation with Miami-Dade Water and Sewer Department, investigated effluent transport from the Boulder Zone to overlying permeable zones in the Floridan aquifer system.One conceptual model is presented to explain the presence of effluent outside of the injection zone in which effluent injected into the Boulder Zone was transported to the Avon Park permeable zone, forced by buoyancy and injection pressure. In this conceptual model, effluent injected primarily into the Boulder Zone reaches a naturally occurring feature (a karst-collapse structure) near an injection well, through which the effluent is transported vertically upward to the uppermost major permeable zone of the Lower Floridan aquifer. The effluent is then transported laterally through the uppermost major permeable zone of the Lower Floridan aquifer to another naturally occurring feature northwest of the North District Wastewater Treatment Plant, through which it is then transported vertically upward into the Avon Park permeable zone. In addition, a leak within a monitoring well, between monitoring zones, allowed interflow between the Avon Park permeable zone and the Upper Floridan aquifer. A groundwater flow and effluent transport simulation of the hydrogeologic system at the North District Wastewater Treatment Plant, based on the hypothesized and non-unique conceptualization of the subsurface hydrogeology and flow system, generally replicated measured effluent constituent concentration trends. The model was calibrated to match observed concentration trends for total ammonium (NH4+) and total dissolved solids.The investigation qualitatively indicates that fractures, karst-collapse structures, faults, or other hydrogeologic features may permit effluent injected into the Boulder Zone to be transported to overlying permeable zones in the Floridan aquifer system. These findings, however, are qualitative because the locations of transport pathways that might exist from the Boulder Zone to the Avon Park permeable zone are largely unknown.

A New Model for Gas Transfer and Storage in a Permeable Volcanic Edifice

NASA Astrophysics Data System (ADS)

Collinson, A. D.; Neuberg, J.

2011-12-01

There is a marked contrast between the behaviour of a volcano in an open system compared to one which is closed. It is therefore essential to understand degassing, to appreciate how much gas is lost and where. Previous studies by a variety of scientists have led to the accumulation of data via field evidence from both active and fossil volcanoes (Stasiuk et al., 1996), laboratory experiments (Moore et al., 1994) and conceptual modelling, in which Darcy's law has become increasingly applicable (Eichelberger et al., 1986; Edmonds et al., 2003). Of particular interest for this study, is the effect different permeabilities have on the degree and pattern of the gas flux. A new method has been devised to investigate gas transport and storage in a permeable volcanic edifice. The continuity equation and Darcy's law are amalgamated to derive a partial differential equation which is solved using a finite element method to obtain the gas pressure. The associated pressure gradient is then used within Darcy's law to calculate the gas flux. The properties of the gas are described by the ideal gas law. The strength of this method is that it allows the modelling of two and three dimensional structures both in stationary equilibrium and as a time dependent progression. A geometry is created and the pressure and permeabilites incorporated into the model as boundary and domain conditions respectively. The aim of the model is to investigate how variable permeability and pressure gradients influence the gas flux, for example highly permeable cracks in the dome, or impermeable layers within the volcanic structure. We also use this gas model to complement the model of Neuberg et al. (2006) in which brittle failure of the conduit-wall boundary is used as a trigger mechanism of low-frequency earthquakes. The associated behaviour of the gas in response to the brittle failure is simulated in our model by increasing the permeability through a narrow zone at the boundary between the conduit and country rock. In addition, we investigate how the presence of gas and variations in permeability influence the rate and degree of deformation seen in the volcanic edifice. Our model is highly versatile and has the potential to be integral to the understanding of gas transport and storage within a permeable volcanic edifice.

Firefly luciferase-based dynamic bioluminescence imaging: a noninvasive technique to assess tumor angiogenesis.

PubMed

Sun, Amy; Hou, Lewis; Prugpichailers, Tiffany; Dunkel, Jason; Kalani, Maziyar A; Chen, Xiaoyuan; Kalani, M Yashar S; Tse, Victor

2010-04-01

Bioluminescence imaging (BLI) is emerging as a cost-effective, high-throughput, noninvasive, and sensitive imaging modality to monitor cell growth and trafficking. We describe the use of dynamic BLI as a noninvasive method of assessing vessel permeability during brain tumor growth. With the use of stereotactic technique, 10 firefly luciferase-transfected GL26 mouse glioblastoma multiforme cells were injected into the brains of C57BL/6 mice (n = 80). After intraperitoneal injection of D-luciferin (150 mg/kg), serial dynamic BLI was performed at 1-minute intervals (30 seconds exposure) every 2 to 3 days until death of the animals. The maximum intensity was used as an indirect measurement of tumor growth. The adjusted slope of initial intensity (I90/Im) was used as a proxy to monitor the flow rate of blood into the vascular tree. Using a modified Evans blue perfusion protocol, we calculated the relative permeability of the vascular tree at various time points. Daily maximum intensity correlated strongly with tumor volume. At postinjection day 23, histology and BLI demonstrated an exponential growth of the tumor mass. Slopes were calculated to reflect the flow in the vessels feeding the tumor (adjusted slope = I90/Im). The increase in BLI intensity was correlated with a decrease in adjusted slope, reflecting a decrease in the rate of blood flow as tumor volume increased (y = 93.8e-0.49, R2 = 0.63). Examination of calculated slopes revealed a peak in permeability around postinjection day 20 (n = 42, P < .02 by 1-way analysis of variance) and showed a downward trend in relation to both postinjection day and maximum intensity observed; as angiogenesis progressed, tumor vessel caliber increased dramatically, resulting in sluggish but increased flow. This trend was correlated with Evans blue histology, revealing an increase in Evans blue dye uptake into the tumor, as slope calculated by BLI increases. Dynamic BLI is a practical, noninvasive technique that can semiquantitatively monitor changes in vascular permeability and therefore facilitate the study of tumor angiogenesis in animal models of disease.

Inferring Firn Permeability from Pneumatic Testing: A Case Study on the Greenland Ice Sheet

NASA Astrophysics Data System (ADS)

Sommers, Aleah N.; Rajaram, Harihar; Weber, Eliezer P.; MacFerrin, Michael J.; Colgan, William T.; Stevens, C. Max

2017-03-01

Across the accumulation zone of the Greenland ice sheet, summer temperatures can be sufficiently warm to cause widespread melting, as was the case in July 2012 when the entire ice sheet experienced a brief episode of enhanced surface ablation. The resulting meltwater percolates into the firn and refreezes, to create ice lenses and layers within the firn column. This is an important process to consider when estimating the surface mass balance of the ice sheet. The rate of meltwater percolation depends on the permeability of the firn, a property that is not well constrained in the presence of refrozen ice layers and lenses. We present a novel, inexpensive method for measuring in-situ firn permeability using pneumatic testing, a well-established technique used in environmental engineering and hydrology. To illustrate the capabilities of this method, we estimate both horizontal and vertical permeability from pilot tests at six sites on the Greenland ice sheet: KAN-U, DYE-2, EKT, NASA-SE, Saddle, and EastGRIP. These sites cover a range of conditions from mostly dry firn (EastGRIP), to firn with several ice layers and lenses from refrozen meltwater (Saddle, NASA-SE, EKT), to firn with extensive ice layers (DYE-2 and KAN-U). The estimated permeability in firn without refrozen ice layers at EastGRIP agrees well with the range previously reported using an air permeameter to measure permeability through firn core samples at Summit, Greenland. At sites with ice lenses or layers, we find high degrees of anisotropy, with vertical permeability much lower than horizontal permeability. Pneumatic testing is a promising and low-cost technique for measuring firn permeability, particularly as meltwater production increases in the accumulation zone and ice layers and lenses from refrozen melt layers become more prevalent. In these initial proof-of-concept tests, the estimated permeabilities represent effective permeability at the meter scale. With appropriately higher vacuum pressures and more detailed monitoring, effective permeabilities over a larger scale may be quantified reliably, and multiple measurements during a season and across multiple years could improve understanding of the evolving firn structure and permeability. The technique is also suitable for broad application in Antarctica and other glaciers and ice caps.

Petrophysical analysis of geophysical logs of the National Drilling Company-U.S. Geological Survey ground-water research project for Abu Dhabi Emirate, United Arab Emirates

USGS Publications Warehouse

Jorgensen, Donald G.; Petricola, Mario

1994-01-01

A program of borehole-geophysical logging was implemented to supply geologic and geohydrologic information for a regional ground-water investigation of Abu Dhabi Emirate. Analysis of geophysical logs was essential to provide information on geohydrologic properties because drill cuttings were not always adequate to define lithologic boundaries. The standard suite of logs obtained at most project test holes consisted of caliper, spontaneous potential, gamma ray, dual induction, microresistivity, compensated neutron, compensated density, and compensated sonic. Ophiolitic detritus from the nearby Oman Mountains has unusual petrophysical properties that complicated the interpretation of geophysical logs. The density of coarse ophiolitic detritus is typically greater than 3.0 grams per cubic centimeter, porosity values are large, often exceeding 45 percent, and the clay fraction included unusual clays, such as lizardite. Neither the spontaneous-potential log nor the natural gamma-ray log were useable clay indicators. Because intrinsic permeability is a function of clay content, additional research in determining clay content was critical. A research program of geophysical logging was conducted to determine the petrophysical properties of the shallow subsurface formations. The logging included spectral-gamma and thermal-decay-time logs. These logs, along with the standard geophysical logs, were correlated to mineralogy and whole-rock chemistry as determined from sidewall cores. Thus, interpretation of lithology and fluids was accomplished. Permeability and specific yield were calculated from geophysical-log data and correlated to results from an aquifer test. On the basis of results from the research logging, a method of lithologic and water-resistivity interpretation was developed for the test holes at which the standard suite of logs were obtained. In addition, a computer program was developed to assist in the analysis of log data. Geohydrologic properties were estimated, including volume of clay matrix, volume of matrix other than clay, density of matrix other than clay, density of matrix, intrinsic permeability, specific yield, and specific storage. Geophysical logs were used to (1) determine lithology, (2) correlate lithologic and permeable zones, (3) calibrate seismic reprocessing, (4) calibrate transient-electromagnetic surveys, and (5) calibrate uphole-survey interpretations. Logs were used at the drill site to (1) determine permeability zones, (2) determine dissolved-solids content, which is a function of water resistivity, and (3) design wells accordingly. Data and properties derived from logs were used to determine transmissivity and specific yield of aquifer materials.

Application of histogram analysis for the evaluation of vascular permeability in glioma by the K2 parameter obtained with the dynamic susceptibility contrast method: Comparisons with Ktrans obtained with the dynamic contrast enhance method and cerebral blood volume.

PubMed

Taoka, Toshiaki; Kawai, Hisashi; Nakane, Toshiki; Hori, Saeka; Ochi, Tomoko; Miyasaka, Toshiteru; Sakamoto, Masahiko; Kichikawa, Kimihiko; Naganawa, Shinji

2016-09-01

The "K2" value is a factor that represents the vascular permeability of tumors and can be calculated from datasets obtained with the dynamic susceptibility contrast (DSC) method. The purpose of the current study was to correlate K2 with Ktrans, which is a well-established permeability parameter obtained with the dynamic contrast enhance (DCE) method, and determine the usefulness of K2 for glioma grading with histogram analysis. The subjects were 22 glioma patients (Grade II: 5, III: 6, IV: 11) who underwent DSC studies, including eight patients in which both DSC and DCE studies were performed on separate days within 10days. We performed histogram analysis of regions of interest of the tumors and acquired 20th percentile values for leakage-corrected cerebral blood volume (rCBV20%ile), K2 (K220%ile), and for patients who underwent a DCE study, Ktrans (Ktrans20%ile). We evaluated the correlation between K220%ile and Ktrans20%ile and the statistical difference between rCBV20%ile and K220%ile. We found a statistically significant correlation between K220%ile and Ktrans20%ile (r=0.717, p<0.05). rCBV20%ile showed a significant difference between Grades II and III and between Grades II and IV, whereas K220%ile showed a statistically significant (p<0.05) difference between Grades II and IV and between Grades III and IV. The K2 value calculated from the DSC dataset, which can be obtained with a short acquisition time, showed a correlation with Ktrans obtained with the DCE method and may be useful for glioma grading when analyzed with histogram analysis. Copyright © 2016 Elsevier Inc. All rights reserved.

Plasma endotoxin core antibody concentration and linear growth are unrelated in rural Malawian children aged 2-5 years.

PubMed

Benzoni, Nicole; Korpe, Poonum; Thakwalakwa, Chrissie; Maleta, Ken; Stephenson, Kevin; Manary, Micah; Manary, Mark

2015-06-24

Environmental enteropathy is subclinical inflammation of the upper gastrointestinal tract associated with reduced linear growth in developing countries. Usually investigators have used biopsy or a dual sugar absorption test to assess environmental enteropathy. Such tests are time and resource intensive, restricting their utility as screening methods. Serum endotoxin core antibody (EndoCab) concentration is a potential indicator of intestinal inflammation and integrity, and thus may be useful to predict environmental enteropathy. We analyzed the association of serum EndoCab levels versus linear growth and lactulose-mannitol assay results in 2-5 year old rural Malawian children. This was an observational study of 388 rural, asymptomatic Malawian children who had anthropometric measurements taken at least every 3 months since birth. In June and July 2011, dual sugar permeability tests were performed and serum samples were drawn for EndoCab assays. Pearson correlation, Student's t test and multivariable linear regression were used to compare ln EndoCab concentrations with height-for-age z scores (HAZ) at time of sampling and 3 months later. Identical analysis was also performed for ln EndoCab versus measurements from dual sugar permeability testing performed in conjunction with serum sampling. In a subgroup of children with anthropometric data in the months prior to serum sampling, Pearson correlation was used to estimate the relationship between ln EndoCab and recent linear growth. Ln EndoCab concentrations were not correlated with HAZ at time of measurement (B = -0.078, P = 0.14) nor change in HAZ over the subsequent 3 months HAZ (B = -0.018, P = 0.27). EndoCab concentration was not associated with %lactulose excretion (B < 0.001, P = 0.98) nor the lactulose:mannitol ratio (B = 0.021, P = 0.62). Subgroup analysis also did not reveal any significant association between EndoCab and recent growth. EndoCab titers were not correlated with measurements of growth or intestinal permeability in rural pre-school aged Malawian children.

Assessment of Jahn permeable mortar system in a historic bridge abutment application.

DOT National Transportation Integrated Search

2015-06-01

Increasingly, the importance of historic preservation is competing with the requirements to enhance : structural capacity of older unique structures. Preservation of the functional and aesthetic qualities limits : potential change to meet the expande...

The main factors controlling petrophysical alteration in hydrothermal systems of the Kuril-Kamchatka island arch

NASA Astrophysics Data System (ADS)

Frolova, J.; Ladygin, V.; Rychagov, S.; Shanina, V.; Blyumkina, M.

2009-04-01

This report is based on the results of petrophysical studies obtained on a number of hydrothermal systems in the Kuril-Kamchatka island arc (Pauzhetsky, Mutnovsky, Koshelevsky, Essovsky, a volcano of Ebeko, Oceansky). Mineral composition and pore-space structure of primary rocks change intensively during hydrothermal process, results in alteration of petrophysical properties - porosity, density, permeability, hygroscopy, sonic velocity, elastic modulus, mechanical properties, thermal and magnetic characteristics. Petrophysical alterations gradually lead to the change of the structure of hydrothermal system, and its hydrodynamic and temperature regime. The tendency of petrophysical alteration can be different. In some cases rocks "improvement" is observed i.e. consolidation, hardening, decrease of porosity and permeability, removal of hygroscopy. In other cases rocks "deterioration" occurs, i.e. formation of secondary porosity and permeability, a decrease of density, strength, and elastic modulus, and occurrence of hygroscopic moisture. The classical example of cardinal petrophysical alteration is the transformation of hard basalts to plastic clays. The opposite example is the transformation of only slightly consolidates porous tuffs to hard and dense secondary quartzite. The character of petrophysical alteration depends on a number of factors including peculiarities of primary rocks, temperature, pressure and composition of thermal fluids, duration of fluid-rock interaction, and condition of fluid (steam, water, boiling water). The contribution of each factor to change of volcanic rocks properties is considered and analyzed in details. In particular, primary rocks controls speed, intensity and character of petrophysical alterations. Factors favorable for alteration are high porosity and permeability, micro crakes, weak cementation, glassy structure, basaltic composition. Kuril-Kamchatka region represents the volcanic island arch so host rocks in hydrothermal systems are mainly volcanic or volcaniclastic types of Neogene-Quaternary age. Volcanic rocks (lava rocks) are dense with high strength and elastic modulus and low porosity and permeability. The speed of their alteration is low. Basically volcanic rocks form impermeable horizons in the structure of hydrothermal system. But sometimes they form fracture-type reservoir. The origin of fracturing can be various. Volcanoclastic rocks are characterized by lower physical and mechanical properties, higher porosity and permeability. Due to high porosity and permeability they are greatly exposed to thermal fluids so they are altered intensively. Volcaniclastic rocks are the most common host rocks of geothermal reservoirs. Typically they form porous or fracture-porous aquifers. But in some cases they form water confining layers. The well-studied example is Pauzhetskaya hydrothermal system. The main reservoir is composed of highly porous (30-40%) and permeable medium-grained tuffs. The caprock is composed of fine-grained argillized tuffs. They are highly porous but due to small pore size porosity is un-effective for fluid and permeability is low. The temperature and pressure in a hydrothermal system cardinally influence on rocks properties. High-temperature deep fluids (Т>200C) cause the perfect tendency of petrophysical alteration - consolidation, hardening, a decrease of porosity and permeability, and removal of a hygroscopic moisture. This petrophysical tendency is observed independently of composition of fluids. This is the result of the development of high-temperature secondary minerals, which fill pores and cracks, and substitute matrix and phenocrystals. The contacts between grains become strong and dense, intergranular porosity is disappeared that reinforces cementation of rock. The petrophysical alteration caused by low-temperature subsurface fluids (Т<150C) are more difficult and diverse. Depending on what process prevails - rocks leaching, sedimentation of secondary minerals in pores and cracks or replacement of primary minerals by secondary minerals, it can lead to both: an increase or a decrease in petrophysical properties. Financial support from RFBR (project 05-07-00118-a)

A comparison of etched-geometry and overgrown silicon permeable base transistors by two-dimensional numerical simulations

NASA Astrophysics Data System (ADS)

Vojak, B. A.; Alley, G. D.

1983-08-01

Two-dimensional numerical simulations are used to compare etched geometry and overgrown Si permeable base transistors (PTBs), considering both the etched collector and etched emitter biasing conditions made possible by the asymmetry of the etched structure. In PTB devices, the two-dimensional nature of the depletion region near the Schottky contact base grating results in a smaller electron barrier and, therefore, a larger collector current in the etched than in the overgrown structure. The parasitic feedback effects which result at high base-to-emitter bias levels lead to a deviation from the square-law behavior found in the collector characteristics of the overgrown PBT. These structures also have lower device capacitances and smaller transconductances at high base-to-emitter voltages. As a result, overgrown and etched structures have comparable predicted maximum values of the small signal unity short-circuit current gain frequency and maximum oscillation frequency.

Reduction in lipophilicity improved the solubility, plasma–protein binding, and permeability of tertiary sulfonamide RORc inverse agonists

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fauber, Benjamin P.; René, Olivier; de Leon Boenig, Gladys

2014-08-01

Using structure-based drug design principles, we identified opportunities to reduce the lipophilicity of our tertiary sulfonamide RORc inverse agonists. The new analogs possessed improved RORc cellular potencies with >77-fold selectivity for RORc over other nuclear receptors in our cell assay suite. The reduction in lipophilicity also led to an increased plasma–protein unbound fraction and improvements in cellular permeability and aqueous solubility.

Physiological barriers to the oral delivery of curcumin.

PubMed

Berginc, K; Trontelj, J; Basnet, N Skalko; Kristl, A

2012-06-01

Curcumin, a principal component from Curcuma longa, with antioxidant and anti-inflammatory activities was proposed as a potential candidate for the preventation and/or treatment of cancer and chronic diseases. However, curcumin could not achieve its expected therapeutic outcome in clinical trials due to its low solubility and poor bioavailability. The actual intestinal physiological barriers limiting curcumin absorption after oral administration have not been fully investigated. To identify the main barriers curtailing its absorption, in vitro permeability of curcumin and flux of its glucuronide were monitored in rat jejunum and Transwell grown Caco-2 cells. Curcumin was more permeable under acidic conditions, but the permeability was substantially below the permeability of highly permeable standards. Its efflux could not be inhibited by specific Pgp and MRP inhibitors. BCRP was found to participate in curcumin transport, but the Organic Anion Transporting Polypeptide (OATP) did not. The permeability of curcumin significantly increased when the structure of mucus was compromised. The inhibitor of curcumin metabolism, piperin, failed to act as a permeability enhancer. Piperin inhibited Pgp and MRP transporters and decreased the amount of glucuronide transported back into the intestine. Inclusion of piperin in curcumin-containing formulations is highly recommended as to inhibit curcumin glucuronidation and to increase the transport of formed glucuronides into the plasma, therefore increasing the probability of glucuronide distribution into target tissue and inter-convertion to curcumin. It would also be beneficial, if curcumin delivery systems could reversibly compromise the mucous integrity to minimize the non-specific binding of curcumin to its constituents.

On the Examination of Darcy Permeability a Thin Fibrous Porous Layer

NASA Astrophysics Data System (ADS)

Zhu, Zenghao; Wang, Qiuyun; Wu, Qianhong; Vucbmss Team

2016-11-01

In this paper, we report a novel experimental approach to investigate the Darcy permeability of a soft and thin fibrous porous layer. The project is inspired by recent studies involved compression of very thin porous films and the resultant pore fluid flow inside the confined porous structure. The Darcy permeability plays a critical role during the process, which however, is tricky to measure due to the very thin nature of the porous media. In the current study, a special micro-fluidic device is developed that consists of a rectangular flow channel with adjustable gap height ranging from 20 mm to 0.5 mm. Air is forced through the thin gap filled with testing fibrous materials. By measuring the flow rate and the pressure drop, we have successfully obtained the Darcy permeability of different thin porous sheets at different compression ratios. Furthermore, the surface area of the fibers are evaluated using a Micromeritics® ASAP 2020 (Accelerated Surface Area and Porosimetry) system. We found that, although the functions relating the permeability and porosities are different for different fibrous materials, these functions collapse to a single relationship if one express the permeability as a function of the solid phase surface area per unit volume. This finding provides a useful approach to evaluate the permeability of very thin fibrous porous sheet, which otherwise is difficult to measure directly. This research was supported by the National Science Foundation under Award #1511096.

C1-Continuous relative permeability and hybrid upwind discretization of three phase flow in porous media

NASA Astrophysics Data System (ADS)

Lee, S. H.; Efendiev, Y.

2016-10-01

Three-phase flow in a reservoir model has been a major challenge in simulation studies due to slowly convergent iterations in Newton solution of nonlinear transport equations. In this paper, we examine the numerical characteristics of three-phase flow and propose a consistent, "C1-continuous discretization" (to be clarified later) of transport equations that ensures a convergent solution in finite difference approximation. First, we examine three-phase relative permeabilities that are critical in solving nonlinear transport equations. Three-phase relative permeabilities are difficult to measure in the laboratory, and they are often correlated with two-phase relative permeabilities (e.g., oil-gas and water-oil systems). Numerical convergence of non-linear transport equations entails that three-phase relative permeability correlations are a monotonically increasing function of the phase saturation and the consistency conditions of phase transitions are satisfied. The Modified Stone's Method II and the Linear Interpolation Method for three-phase relative permeability are closely examined for their mathematical properties. We show that the Linear Interpolation Method yields C1-continuous three-phase relative permeabilities for smooth solutions if the two phase relative permeabilities are monotonic and continuously differentiable. In the second part of the paper, we extend a Hybrid-Upwinding (HU) method of two-phase flow (Lee, Efendiev and Tchelepi, ADWR 82 (2015) 27-38) to three phase flow. In the HU method, the phase flux is divided into two parts based on the driving forces (in general, it can be divided into several parts): viscous and buoyancy. The viscous-driven and buoyancy-driven fluxes are upwinded differently. Specifically, the viscous flux, which is always co-current, is upwinded based on the direction of the total velocity. The pure buoyancy-induced flux is shown to be only dependent on saturation distributions and counter-current. In three-phase flow, the buoyancy effect can be expressed as a sum of two buoyancy effects from two-phase flows, i.e., oil-water and oil-gas systems. We propose an upwind scheme for the buoyancy flux term from three-phase flow as a sum of two buoyancy terms from two-phase flows. The upwind direction of the buoyancy flux in two phase flow is always fixed such that the heavier fluid goes downward and the lighter fluid goes upward. It is shown that the Implicit Hybrid-Upwinding (IHU) scheme for three-phase flow is locally conservative and produces physically-consistent numerical solutions. As in two phase flow, the primary advantage of the IHU scheme is that the flux of a fluid phase remains continuous and differentiable as the flow regime changes between co-current and counter-current conditions as a function of time, or (Newton) iterations. This is in contrast to the standard phase-potential-based upwinding scheme, in which the overall fractional-flow (flux) function is non-differentiable across the transition between co-current and counter-current flows.

Transient pressure-pulse decay permeability measurements in the Barnett shale

NASA Astrophysics Data System (ADS)

Bhandari, A. R.; Reece, J.; Cronin, M. B.; Flemings, P. B.; Polito, P. J.

2012-12-01

We conducted transient pressure-pulse decay permeability measurements on core plugs of the Barnett shale using a hydrostatic pressure cell. Core plugs, 3.8 cm in diameter and less than 2.5 cm in length, were prepared from a core obtained at a depth of approximately 2330 m from the Mitchel Energy 2 T. P. Sims well in the Mississippian Barnett Formation (Loucks and Ruppel, 2007). We performed permeability measurements of the core plugs using argon at varying confining pressures in two different directions (perpendicular and parallel to bedding planes). We calculate gas permeability from changes in pressure with time using the analytical solution of the pressure diffusion equation with appropriate boundary conditions for our test setup (Dicker and Smits, 1988). Based on our limited results, we interpret 2 × 10-18 m2 for vertical permeability and 156 × 10-18 m2 for horizontal permeability. We demonstrate an extreme stress dependence of the horizontal flow permeability where permeability decreases from 156 × 10-18 m2 to 2.5 × 10-18 m2 as the confining stress is increased from 3.5 to 35 MPa. These permeability measurements are at the high side of other pulsed permeability measurements in the Barnett shale (Bustin et al. 2008; Vermylen, 2011). Permeabilities calculated from mercury injection capillary pressure curves, using theoretically derived permeability-capillary pressure models based on parallel tubes assumption, are orders of magnitude less than our transient pressure-pulse decay permeability measurements (for example, 3.7×10-21 m2 (this study), 10-21 -10-20 m2 (Sigal, 2007), 10-20 -10-17 m2 (Prince et al., 2010)). We interpret that the high measured permeabilities are due to microfractures in the sample. At this point, we do not know if the microfractures are due to sampling disturbance (stress-relief induced) or represent an in-situ fracture network. Our study illustrates the importance of characterization of microfractures at the core scale to understand better the transport behavior in shale matrix and sealing efficiency of cap rocks. References Bustin et al. (2008), Impact of shale properties on pore structure and storage characteristics, SPE 119892. Dicker and Smits (1988), A practical method for determining permeability from laboratory pressure-pulse decay measurements, SPE 17578. Loucks and Ruppel (2007), Mississippian Barnett Shale: Lithofacies and depositional setting of a deep-water shale gas succession in the Fort Worth Basin, Texas, AAPG 2007. Sigal (2007), Mercury capillary pressure measurements on Barnett core. (http://shale.ou.edu/Home/Publication) Prince et al. (2010), Shale diagenesis and permeability: examples from the Barnett shale and the Marcellus formation, AAPG 2010. Vermylen, J.P. (2011), Geomechanical studies of the Barnett Shale, Texas, USA, PhD thesis, Stanford University.

Evaluation of the suitability of chromatographic systems to predict human skin permeation of neutral compounds.

PubMed

Hidalgo-Rodríguez, Marta; Soriano-Meseguer, Sara; Fuguet, Elisabet; Ràfols, Clara; Rosés, Martí

2013-12-18

Several chromatographic systems (three systems of high-performance liquid chromatography and two micellar electrokinetic chromatography systems) besides the reference octanol-water partition system are evaluated by a systematic procedure previously proposed in order to know their ability to model human skin permeation. The precision achieved when skin-water permeability coefficients are correlated against chromatographic retention factors is predicted within the framework of the solvation parameter model. It consists in estimating the contribution of error due to the biological and chromatographic data, as well as the error coming from the dissimilarity between the human skin permeation and the chromatographic systems. Both predictions and experimental tests show that all correlations are greatly affected by the considerable uncertainty of the skin permeability data and the error associated to the dissimilarity between the systems. Correlations with much better predictive abilities are achieved when the volume of the solute is used as additional variable, which illustrates the main roles of both lipophilicity and size of the solute to penetrate through the skin. In this way, the considered systems are able to give precise estimations of human skin permeability coefficients. In particular, the HPLC systems with common C18 columns provide the best performances in emulating the permeation of neutral compounds from aqueous solution through the human skin. As a result, a methodology based on easy, fast, and economical HPLC measurements in a common C18 column has been developed. After a validation based on training and test sets, the method has been applied with good results to the estimation of skin permeation of several hormones and pesticides. Copyright © 2013 Elsevier B.V. All rights reserved.

Prediction of blood-brain barrier permeation of α-adrenergic and imidazoline receptor ligands using PAMPA technique and quantitative-structure permeability relationship analysis.

PubMed

Vucicevic, Jelica; Nikolic, Katarina; Dobričić, Vladimir; Agbaba, Danica

2015-02-20

Imidazoline receptor ligands are a numerous family of biologically active compounds known to produce central hypotensive effect by interaction with both α2-adrenoreceptors (α2-AR) and imidazoline receptors (IRs). Recent hypotheses connect those ligands with several neurological disorders. Therefore some IRs ligands are examined as novel centrally acting antihypertensives and drug candidates for treatment of various neurological diseases. Effective Blood-Brain Barrier (BBB) permeability (P(e)) of 18 IRs/α-ARs ligands and 22 Central Nervous System (CNS) drugs was experimentally determined using Parallel Artificial Membrane Permeability Assay (PAMPA) and studied by the Quantitative-Structure-Permeability Relationship (QSPR) methodology. The dominant molecules/cations species of compounds have been calculated at pH = 7.4. The analyzed ligands were optimized using Density Functional Theory (B3LYP/6-31G(d,p)) included in ChemBio3D Ultra 13.0 program and molecule descriptors for optimized compounds were calculated using ChemBio3D Ultra 13.0, Dragon 6.0 and ADMET predictor 6.5 software. Effective permeability of compounds was used as dependent variable (Y), while calculated molecular parametres were used as independent variables (X) in the QSPR study. SIMCA P+ 12.0 was used for Partial Least Square (PLS) analysis, while the stepwise Multiple Linear Regression (MLR) and Artificial Neural Networks (ANN) modeling were performed using STASTICA Neural Networks 4.0. Predictive potential of the formed models was confirmed by Leave-One-Out Cross- and external-validation and the most reliable models were selected. The descriptors that are important for model building are identified as well as their influence on BBB permeability. Results of the QSPR studies could be used as time and cost efficient screening tools for evaluation of BBB permeation of novel α-adrenergic/imidazoline receptor ligands, as promising drug candidates for treatment of hypertension or neurological diseases. Copyright © 2014 Elsevier B.V. All rights reserved.

Transmural Intestinal Wall Permeability in Severe Ischemia after Enteral Protease Inhibition

PubMed Central

Altshuler, Angelina E.; Lamadrid, Itze; Li, Diana; Ma, Stephanie R.; Kurre, Leena; Schmid-Schönbein, Geert W.; Penn, Alexander H.

2014-01-01

In intestinal ischemia, inflammatory mediators in the small intestine's lumen such as food byproducts, bacteria, and digestive enzymes leak into the peritoneal space, lymph, and circulation, but the mechanisms by which the intestinal wall permeability initially increases are not well defined. We hypothesize that wall protease activity (independent of luminal proteases) and apoptosis contribute to the increased transmural permeability of the intestine's wall in an acutely ischemic small intestine. To model intestinal ischemia, the proximal jejunum to the distal ileum in the rat was excised, the lumen was rapidly flushed with saline to remove luminal contents, sectioned into equal length segments, and filled with a tracer (fluorescein) in saline, glucose, or protease inhibitors. The transmural fluorescein transport was determined over 2 hours. Villi structure and epithelial junctional proteins were analyzed. After ischemia, there was increased transmural permeability, loss of villi structure, and destruction of epithelial proteins. Supplementation with luminal glucose preserved the epithelium and significantly attenuated permeability and villi damage. Matrix metalloproteinase (MMP) inhibitors (doxycycline, GM 6001), and serine protease inhibitor (tranexamic acid) in the lumen, significantly reduced the fluorescein transport compared to saline for 90 min of ischemia. Based on these results, we tested in an in-vivo model of hemorrhagic shock (90 min 30 mmHg, 3 hours observation) for intestinal lesion formation. Single enteral interventions (saline, glucose, tranexamic acid) did not prevent intestinal lesions, while the combination of enteral glucose and tranexamic acid prevented lesion formation after hemorrhagic shock. The results suggest that apoptotic and protease mediated breakdown cause increased permeability and damage to the intestinal wall. Metabolic support in the lumen of an ischemic intestine with glucose reduces the transport from the lumen across the wall and enteral proteolytic inhibition attenuates tissue breakdown. These combined interventions ameliorate lesion formation in the small intestine after hemorrhagic shock. PMID:24805256

Simulation of Groundwater Mounding Beneath Hypothetical Stormwater Infiltration Basins

USGS Publications Warehouse

Carleton, Glen B.

2010-01-01

Groundwater mounding occurs beneath stormwater management structures designed to infiltrate stormwater runoff. Concentrating recharge in a small area can cause groundwater mounding that affects the basements of nearby homes and other structures. Methods for quantitatively predicting the height and extent of groundwater mounding beneath and near stormwater Finite-difference groundwater-flow simulations of infiltration from hypothetical stormwater infiltration structures (which are typically constructed as basins or dry wells) were done for 10-acre and 1-acre developments. Aquifer and stormwater-runoff characteristics in the model were changed to determine which factors are most likely to have the greatest effect on simulating the maximum height and maximum extent of groundwater mounding. Aquifer characteristics that were changed include soil permeability, aquifer thickness, and specific yield. Stormwater-runoff variables that were changed include magnitude of design storm, percentage of impervious area, infiltration-structure depth (maximum depth of standing water), and infiltration-basin shape. Values used for all variables are representative of typical physical conditions and stormwater management designs in New Jersey but do not include all possible values. Results are considered to be a representative, but not all-inclusive, subset of likely results. Maximum heights of simulated groundwater mounds beneath stormwater infiltration structures are the most sensitive to (show the greatest change with changes to) soil permeability. The maximum height of the groundwater mound is higher when values of soil permeability, aquifer thickness, or specific yield are decreased or when basin depth is increased or the basin shape is square (and values of other variables are held constant). Changing soil permeability, aquifer thickness, specific yield, infiltration-structure depth, or infiltration-structure shape does not change the volume of water infiltrated, it changes the shape or height of the groundwater mound resulting from the infiltration. An aquifer with a greater soil permeability or aquifer thickness has an increased ability to transmit water away from the source of infiltration than aquifers with lower soil permeability; therefore, the maximum height of the groundwater mound will be lower, and the areal extent of mounding will be larger. The maximum height of groundwater mounding is higher when values of design storm magnitude or percentage of impervious cover (from which runoff is captured) are increased (and other variables are held constant) because the total volume of water to be infiltrated is larger. The larger the volume of infiltrated water the higher the head required to move that water away from the source of recharge if the physical characteristics of the aquifer are unchanged. The areal extent of groundwater mounding increases when soil permeability, aquifer thickness, design-storm magnitude, or percentage of impervious cover are increased (and values of other variables are held constant). For 10-acre sites, the maximum heights of the simulated groundwater mound range from 0.1 to 18.5 feet (ft). The median of the maximum-height distribution from 576 simulations is 1.8 ft. The maximum areal extent (measured from the edge of the infiltration basins) of groundwater mounding of 0.25-ft ranges from 0 to 300 ft with a median of 51 ft for 576 simulations. Stormwater infiltration at a 1-acre development was simulated, incorporating the assumption that the hypothetical infiltration structure would be a pre-cast concrete dry well having side openings and an open bottom. The maximum heights of the simulated groundwater-mounds range from 0.01 to 14.0 ft. The median of the maximum-height distribution from 432 simulations is 1.0 ft. The maximum areal extent of groundwater mounding of 0.25-ft ranges from 0 to 100 ft with a median of 10 ft for 432 simulations. Simulated height and extent of groundwater mounding associ

Fluorescein permeability and electrical resistance of human skin during low frequency ultrasound application.

PubMed

Cancel, Limary M; Tarbell, John M; Ben-Jebria, Abdellaziz

2004-09-01

Transdermal drug delivery offers an alternative to injections and oral medication but is limited by the low skin permeability of most drugs. The use of low-frequency ultrasound over long periods of time, typically over an hour, has been shown to enhance skin permeability, a phenomenon referred to as sonophoresis. In this study, we investigated the effects of short time sonication of human skin at 20 kHz and at variable intensities and duty cycles on the dynamics of fluorescein transport across the skin (permeability) as well as the changes in the skin's structural integrity (electrical resistance). We found that a short application of ultrasound enhanced the transport of fluorescein across human skin by a factor in the range of 2-9 for full thickness skin samples and by a factor in the range of 2-28 000 for heat-stripped stratum corneum samples (however, samples with very high (10(3)) enhancement were likely to have been damaged by ultrasound). The electrical resistance of the skin decreased by an average of 20% for full thickness samples and 58% for stratum corneum samples. Increasing the duty cycle from 10 to 60% caused a significant increase in permeability enhancement from 2.3 to 9.1, and an increase in intensity from 8 to 23 mW cm(-2) induced a significant increase in permeability enhancement from 2 to 7.4, indicating a clear dependence of the permeability on both duty cycle and intensity. The increase in solute flux upon ultrasound exposure was immediate, demonstrating for the first time the fast response dynamics of sonophoretic enhancement. In addition, a quantitative analysis of the thermal and convective dispersion effects associated with ultrasound application showed that each contributes significantly to the overall permeability enhancement observed.

Evaluation of Cone Penetrometer Data for Permeability Correlation at the Savannah River Site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harris, M.K.

1997-02-01

This report documents the results of an assessment of cone penetrometer technology (CPT) use at the Savannah River Site. The study is intended to provide valuable insight into methods of increasing the utility of CPT data for site characterization.

Circulating Biomarkers of Gut Barrier Function: Correlates and Nonresponse to Calcium Supplementation among Colon Adenoma Patients.

PubMed

Yang, Baiyu; Bostick, Roberd M; Tran, Hao Quang; Gewirtz, Andrew T; Campbell, Peter T; Fedirko, Veronika

2016-02-01

Gut barrier dysfunction contributes to several gastrointestinal disorders, including colorectal cancer, but factors associated with intestinal hyperpermeability have been minimally studied in humans. We tested the effects of two doses of calcium (1.0 or 2.0 g/d) on circulating biomarkers of gut permeability [anti-flagellin and anti-lipopolysaccharide (LPS) Ig, measured via ELISA] over a 4-month treatment period among colorectal adenoma patients in a randomized, double-blinded, placebo-controlled clinical trial (n = 193), and evaluated the factors associated with baseline levels of these biomarkers. Baseline concentrations of anti-flagellin IgA and anti-LPS IgA were, respectively, statistically significantly proportionately higher by 11.8% and 14.1% among men, 31.3% and 39.8% among those with a body mass index ≥ 35 kg/m(2), and 19.9% and 22.0% among those in the upper relative to the lowest sex-specific tertile of waist circumference. A combined permeability score (the summed optical densities of all four biomarkers) was 24.3% higher among women in the upper tertile of plasma C-reactive protein (Ptrend < 0.01). We found no appreciable effects of supplemental calcium on anti-flagellin or anti-LPS Igs. Our results suggest that (i) men and those with higher adiposity may have greater gut permeability, (ii) gut permeability and systemic inflammation may be directly associated with one another, and (iii) supplemental calcium may not modify circulating levels of gut permeability biomarkers within 4 months. Our findings may improve the understanding of the factors that influence gut permeability to inform development of treatable biomarkers of risk for colorectal cancer and other health outcomes. ©2015 American Association for Cancer Research.

A laboratory study to estimate pore geometric parameters of sandstones using complex conductivity and nuclear magnetic resonance for permeability prediction

DOE Office of Scientific and Technical Information (OSTI.GOV)

Osterman, Gordon; Keating, Kristina; Binley, Andrew

Here, we estimate parameters from the Katz and Thompson permeability model using laboratory complex electrical conductivity (CC) and nuclear magnetic resonance (NMR) data to build permeability models parameterized with geophysical measurements. We use the Katz and Thompson model based on the characteristic hydraulic length scale, determined from mercury injection capillary pressure estimates of pore throat size, and the intrinsic formation factor, determined from multisalinity conductivity measurements, for this purpose. Two new permeability models are tested, one based on CC data and another that incorporates CC and NMR data. From measurements made on forty-five sandstone cores collected from fifteen different formations,more » we evaluate how well the CC relaxation time and the NMR transverse relaxation times compare to the characteristic hydraulic length scale and how well the formation factor estimated from CC parameters compares to the intrinsic formation factor. We find: (1) the NMR transverse relaxation time models the characteristic hydraulic length scale more accurately than the CC relaxation time (R 2 of 0.69 and 0.33 and normalized root mean square errors (NRMSE) of 0.16 and 0.21, respectively); (2) the CC estimated formation factor is well correlated with the intrinsic formation factor (NRMSE50.23). We demonstrate that that permeability estimates from the joint-NMR-CC model (NRMSE50.13) compare favorably to estimates from the Katz and Thompson model (NRMSE50.074). Lastly, this model advances the capability of the Katz and Thompson model by employing parameters measureable in the field giving it the potential to more accurately estimate permeability using geophysical measurements than are currently possible.« less