Multi-frequency Phase Unwrap from Noisy Data: Adaptive Least Squares Approach

NASA Astrophysics Data System (ADS)

Katkovnik, Vladimir; Bioucas-Dias, José

2010-04-01

Multiple frequency interferometry is, basically, a phase acquisition strategy aimed at reducing or eliminating the ambiguity of the wrapped phase observations or, equivalently, reducing or eliminating the fringe ambiguity order. In multiple frequency interferometry, the phase measurements are acquired at different frequencies (or wavelengths) and recorded using the corresponding sensors (measurement channels). Assuming that the absolute phase to be reconstructed is piece-wise smooth, we use a nonparametric regression technique for the phase reconstruction. The nonparametric estimates are derived from a local least squares criterion, which, when applied to the multifrequency data, yields denoised (filtered) phase estimates with extended ambiguity (periodized), compared with the phase ambiguities inherent to each measurement frequency. The filtering algorithm is based on local polynomial (LPA) approximation for design of nonlinear filters (estimators) and adaptation of these filters to unknown smoothness of the spatially varying absolute phase [9]. For phase unwrapping, from filtered periodized data, we apply the recently introduced robust (in the sense of discontinuity preserving) PUMA unwrapping algorithm [1]. Simulations give evidence that the proposed algorithm yields state-of-the-art performance for continuous as well as for discontinues phase surfaces, enabling phase unwrapping in extraordinary difficult situations when all other algorithms fail.

Reliable two-dimensional phase unwrapping method using region growing and local linear estimation.

PubMed

Zhou, Kun; Zaitsev, Maxim; Bao, Shanglian

2009-10-01

In MRI, phase maps can provide useful information about parameters such as field inhomogeneity, velocity of blood flow, and the chemical shift between water and fat. As phase is defined in the (-pi,pi] range, however, phase wraps often occur, which complicates image analysis and interpretation. This work presents a two-dimensional phase unwrapping algorithm that uses quality-guided region growing and local linear estimation. The quality map employs the variance of the second-order partial derivatives of the phase as the quality criterion. Phase information from unwrapped neighboring pixels is used to predict the correct phase of the current pixel using a linear regression method. The algorithm was tested on both simulated and real data, and is shown to successfully unwrap phase images that are corrupted by noise and have rapidly changing phase. (c) 2009 Wiley-Liss, Inc.

Applications and development of new algorithms for displacement analysis using InSAR time series

NASA Astrophysics Data System (ADS)

Osmanoglu, Batuhan

Time series analysis of Synthetic Aperture Radar Interferometry (InSAR) data has become an important scientific tool for monitoring and measuring the displacement of Earth's surface due to a wide range of phenomena, including earthquakes, volcanoes, landslides, changes in ground water levels, and wetlands. Time series analysis is a product of interferometric phase measurements, which become ambiguous when the observed motion is larger than half of the radar wavelength. Thus, phase observations must first be unwrapped in order to obtain physically meaningful results. Persistent Scatterer Interferometry (PSI), Stanford Method for Persistent Scatterers (StaMPS), Short Baselines Interferometry (SBAS) and Small Temporal Baseline Subset (STBAS) algorithms solve for this ambiguity using a series of spatio-temporal unwrapping algorithms and filters. In this dissertation, I improve upon current phase unwrapping algorithms, and apply the PSI method to study subsidence in Mexico City. PSI was used to obtain unwrapped deformation rates in Mexico City (Chapter 3),where ground water withdrawal in excess of natural recharge causes subsurface, clay-rich sediments to compact. This study is based on 23 satellite SAR scenes acquired between January 2004 and July 2006. Time series analysis of the data reveals a maximum line-of-sight subsidence rate of 300mm/yr at a high enough resolution that individual subsidence rates for large buildings can be determined. Differential motion and related structural damage along an elevated metro rail was evident from the results. Comparison of PSI subsidence rates with data from permanent GPS stations indicate root mean square (RMS) agreement of 6.9 mm/yr, about the level expected based on joint data uncertainty. The Mexico City results suggest negligible recharge, implying continuing degradation and loss of the aquifer in the third largest metropolitan area in the world. Chapters 4 and 5 illustrate the link between time series analysis and three-dimensional (3-D) phase unwrapping. Chapter 4 focuses on the unwrapping path. Unwrapping algorithms can be divided into two groups, path-dependent and path-independent algorithms. Path-dependent algorithms use local unwrapping functions applied pixel-by-pixel to the dataset. In contrast, path-independent algorithms use global optimization methods such as least squares, and return a unique solution. However, when aliasing and noise are present, path-independent algorithms can underestimate the signal in some areas due to global fitting criteria. Path-dependent algorithms do not underestimate the signal, but, as the name implies, the unwrapping path can affect the result. Comparison between existing path algorithms and a newly developed algorithm based on Fisher information theory was conducted. Results indicate that Fisher information theory does indeed produce lower misfit results for most tested cases. Chapter 5 presents a new time series analysis method based on 3-D unwrapping of SAR data using extended Kalman filters. Existing methods for time series generation using InSAR data employ special filters to combine two-dimensional (2-D) spatial unwrapping with one-dimensional (1-D) temporal unwrapping results. The new method, however, combines observations in azimuth, range and time for repeat pass interferometry. Due to the pixel-by-pixel characteristic of the filter, the unwrapping path is selected based on a quality map. This unwrapping algorithm is the first application of extended Kalman filters to the 3-D unwrapping problem. Time series analyses of InSAR data are used in a variety of applications with different characteristics. Consequently, it is difficult to develop a single algorithm that can provide optimal results in all cases, given that different algorithms possess a unique set of strengths and weaknesses. Nonetheless, filter-based unwrapping algorithms such as the one presented in this dissertation have the capability of joining multiple observations into a uniform solution, which is becoming an important feature with continuously growing datasets.

Phase recovery from a single interferogram with closed fringes by phase unwrapping

DOE Office of Scientific and Technical Information (OSTI.GOV)

Munoz-Maciel, Jesus; Casillas-Rodriguez, Francisco J.; Mora-Gonzalez, Miguel

2011-01-01

We describe a new algorithm for phase determination from a single interferogram with closed fringes based on an unwrapping procedure. Here we use bandpass filtering in the Fourier domain, obtaining two wrapped phases with sign changes corresponding to the orientation of the applied filters. An unwrapping scheme that corrects the sign ambiguities by comparing the local derivatives is then proposed. This can be done, assuming that the phase derivatives do not change abruptly among adjacent areas as occurs with smooth continuous phase maps. The proposed algorithm works fast and is robust against noise, as demonstrated in experimental and simulated data.

Unweighted least squares phase unwrapping by means of multigrid techniques

NASA Astrophysics Data System (ADS)

Pritt, Mark D.

1995-11-01

We present a multigrid algorithm for unweighted least squares phase unwrapping. This algorithm applies Gauss-Seidel relaxation schemes to solve the Poisson equation on smaller, coarser grids and transfers the intermediate results to the finer grids. This approach forms the basis of our multigrid algorithm for weighted least squares phase unwrapping, which is described in a separate paper. The key idea of our multigrid approach is to maintain the partial derivatives of the phase data in separate arrays and to correct these derivatives at the boundaries of the coarser grids. This maintains the boundary conditions necessary for rapid convergence to the correct solution. Although the multigrid algorithm is an iterative algorithm, we demonstrate that it is nearly as fast as the direct Fourier-based method. We also describe how to parallelize the algorithm for execution on a distributed-memory parallel processor computer or a network-cluster of workstations.

Phase retrieval based wavefront sensing experimental implementation and wavefront sensing accuracy calibration

NASA Astrophysics Data System (ADS)

Mao, Heng; Wang, Xiao; Zhao, Dazun

2009-05-01

As a wavefront sensing (WFS) tool, Baseline algorithm, which is classified as the iterative-transform algorithm of phase retrieval, estimates the phase distribution at pupil from some known PSFs at defocus planes. By using multiple phase diversities and appropriate phase unwrapping methods, this algorithm can accomplish reliable unique solution and high dynamic phase measurement. In the paper, a Baseline algorithm based wavefront sensing experiment with modification of phase unwrapping has been implemented, and corresponding Graphical User Interfaces (GUI) software has also been given. The adaptability and repeatability of Baseline algorithm have been validated in experiments. Moreover, referring to the ZYGO interferometric results, the WFS accuracy of this algorithm has been exactly calibrated.

Fringe-period selection for a multifrequency fringe-projection phase unwrapping method

NASA Astrophysics Data System (ADS)

Zhang, Chunwei; Zhao, Hong; Jiang, Kejian

2016-08-01

The multi-frequency fringe-projection phase unwrapping method (MFPPUM) is a typical phase unwrapping algorithm for fringe projection profilometry. It has the advantage of being capable of correctly accomplishing phase unwrapping even in the presence of surface discontinuities. If the fringe frequency ratio of the MFPPUM is too large, fringe order error (FOE) may be triggered. FOE will result in phase unwrapping error. It is preferable for the phase unwrapping to be kept correct while the fewest sets of lower frequency fringe patterns are used. To achieve this goal, in this paper a parameter called fringe order inaccuracy (FOI) is defined, dominant factors which may induce FOE are theoretically analyzed, a method to optimally select the fringe periods for the MFPPUM is proposed with the aid of FOI, and experiments are conducted to research the impact of the dominant factors in phase unwrapping and demonstrate the validity of the proposed method. Some novel phenomena are revealed by these experiments. The proposed method helps to optimally select the fringe periods and detect the phase unwrapping error for the MFPPUM.

Evaluation of expansion algorithm of measurement range suited for 3D shape measurement using two pitches of projected grating with light source-stepping method

NASA Astrophysics Data System (ADS)

Sakaguchi, Toshimasa; Fujigaki, Motoharu; Murata, Yorinobu

2015-03-01

Accurate and wide-range shape measurement method is required in industrial field. The same technique is possible to be used for a shape measurement of a human body for the garment industry. Compact 3D shape measurement equipment is also required for embedding in the inspection system. A shape measurement by a phase shifting method can measure the shape with high spatial resolution because the coordinates can be obtained pixel by pixel. A key-device to develop compact equipment is a grating projector. Authors developed a linear LED projector and proposed a light source stepping method (LSSM) using the linear LED projector. The shape measurement euipment can be produced with low-cost and compact without any phase-shifting mechanical systems by using this method. Also it enables us to measure 3D shape in very short time by switching the light sources quickly. A phase unwrapping method is necessary to widen the measurement range with constant accuracy for phase shifting method. A general phase unwrapping method with difference grating pitches is often used. It is one of a simple phase unwrapping method. It is, however, difficult to apply the conventional phase unwrapping algorithm to the LSSM. Authors, therefore, developed an expansion unwrapping algorithm for the LSSM. In this paper, an expansion algorithm of measurement range suited for 3D shape measurement using two pitches of projected grating with the LSSM was evaluated.

Edgelist phase unwrapping algorithm for time series InSAR analysis.

PubMed

Shanker, A Piyush; Zebker, Howard

2010-03-01

We present here a new integer programming formulation for phase unwrapping of multidimensional data. Phase unwrapping is a key problem in many coherent imaging systems, including time series synthetic aperture radar interferometry (InSAR), with two spatial and one temporal data dimensions. The minimum cost flow (MCF) [IEEE Trans. Geosci. Remote Sens. 36, 813 (1998)] phase unwrapping algorithm describes a global cost minimization problem involving flow between phase residues computed over closed loops. Here we replace closed loops by reliable edges as the basic construct, thus leading to the name "edgelist." Our algorithm has several advantages over current methods-it simplifies the representation of multidimensional phase unwrapping, it incorporates data from external sources, such as GPS, where available to better constrain the unwrapped solution, and it treats regularly sampled or sparsely sampled data alike. It thus is particularly applicable to time series InSAR, where data are often irregularly spaced in time and individual interferograms can be corrupted with large decorrelated regions. We show that, similar to the MCF network problem, the edgelist formulation also exhibits total unimodularity, which enables us to solve the integer program problem by using efficient linear programming tools. We apply our method to a persistent scatterer-InSAR data set from the creeping section of the Central San Andreas Fault and find that the average creep rate of 22 mm/Yr is constant within 3 mm/Yr over 1992-2004 but varies systematically with ground location, with a slightly higher rate in 1992-1998 than in 1999-2003.

Comparison of multihardware parallel implementations for a phase unwrapping algorithm

NASA Astrophysics Data System (ADS)

Hernandez-Lopez, Francisco Javier; Rivera, Mariano; Salazar-Garibay, Adan; Legarda-Sáenz, Ricardo

2018-04-01

Phase unwrapping is an important problem in the areas of optical metrology, synthetic aperture radar (SAR) image analysis, and magnetic resonance imaging (MRI) analysis. These images are becoming larger in size and, particularly, the availability and need for processing of SAR and MRI data have increased significantly with the acquisition of remote sensing data and the popularization of magnetic resonators in clinical diagnosis. Therefore, it is important to develop faster and accurate phase unwrapping algorithms. We propose a parallel multigrid algorithm of a phase unwrapping method named accumulation of residual maps, which builds on a serial algorithm that consists of the minimization of a cost function; minimization achieved by means of a serial Gauss-Seidel kind algorithm. Our algorithm also optimizes the original cost function, but unlike the original work, our algorithm is a parallel Jacobi class with alternated minimizations. This strategy is known as the chessboard type, where red pixels can be updated in parallel at same iteration since they are independent. Similarly, black pixels can be updated in parallel in an alternating iteration. We present parallel implementations of our algorithm for different parallel multicore architecture such as CPU-multicore, Xeon Phi coprocessor, and Nvidia graphics processing unit. In all the cases, we obtain a superior performance of our parallel algorithm when compared with the original serial version. In addition, we present a detailed comparative performance of the developed parallel versions.

A temporal phase unwrapping algorithm for photoelastic stress analysis

NASA Astrophysics Data System (ADS)

Baldi, Antonio; Bertolino, Filippo; Ginesu, Francesco

2007-05-01

Photoelastic stress analysis is a full-field optical technique for experimental stress analysis whose automation has received considerable research attention over the last 15 years. The latest developments have been made possible largely due to the availability of powerful calculators with large memory capacity and colour, high resolution, cameras. A further stimulus is provided by the photoelastic resins now used for rapid prototyping. However, one critical aspect which still deserves attention is phase unwrapping. The algorithms most commonly used for this purpose have been developed in other scientific areas (classical interferometry, profilometry, moiré, etc.) for solving different problems. In this article a new algorithm is proposed for temporal phase unwrapping, which offers several advantages over those used today.

Application of a swarm-based approach for phase unwrapping

NASA Astrophysics Data System (ADS)

da S. Maciel, Lucas; Albertazzi G., Armando, Jr.

2014-07-01

An algorithm for phase unwrapping based on swarm intelligence is proposed. The novel approach is based on the emergent behavior of swarms. This behavior is the result of the interactions between independent agents following a simple set of rules and is regarded as fast, flexible and robust. The rules here were designed with two purposes. Firstly, the collective behavior must result in a reliable map of the unwrapped phase. The unwrapping reliability was evaluated by each agent during run-time, based on the quality of the neighboring pixels. In addition, the rule set must result in a behavior that focuses on wrapped regions. Stigmergy and communication rules were implemented in order to enable each agent to seek less worked areas of the image. The agents were modeled as Finite-State Machines. Based on the availability of unwrappable pixels, each agent assumed a different state in order to better adapt itself to the surroundings. The implemented rule set was able to fulfill the requirements on reliability and focused unwrapping. The unwrapped phase map was comparable to those from established methods as the agents were able to reliably evaluate each pixel quality. Also, the unwrapping behavior, being observed in real time, was able to focus on workable areas as the agents communicated in order to find less traveled regions. The results were very positive for such a new approach to the phase unwrapping problem. Finally, the authors see great potential for future developments concerning the flexibility, robustness and processing times of the swarm-based algorithm.

A new fringeline-tracking approach for color Doppler ultrasound imaging phase unwrapping

NASA Astrophysics Data System (ADS)

Saad, Ashraf A.; Shapiro, Linda G.

2008-03-01

Color Doppler ultrasound imaging is a powerful non-invasive diagnostic tool for many clinical applications that involve examining the anatomy and hemodynamics of human blood vessels. These clinical applications include cardio-vascular diseases, obstetrics, and abdominal diseases. Since its commercial introduction in the early eighties, color Doppler ultrasound imaging has been used mainly as a qualitative tool with very little attempts to quantify its images. Many imaging artifacts hinder the quantification of the color Doppler images, the most important of which is the aliasing artifact that distorts the blood flow velocities measured by the color Doppler technique. In this work we will address the color Doppler aliasing problem and present a recovery methodology for the true flow velocities from the aliased ones. The problem is formulated as a 2D phase-unwrapping problem, which is a well-defined problem with solid theoretical foundations for other imaging domains, including synthetic aperture radar and magnetic resonance imaging. This paper documents the need for a phase unwrapping algorithm for use in color Doppler ultrasound image analysis. It describes a new phase-unwrapping algorithm that relies on the recently developed cutline detection approaches. The algorithm is novel in its use of heuristic information provided by the ultrasound imaging modality to guide the phase unwrapping process. Experiments have been performed on both in-vitro flow-phantom data and in-vivo human blood flow data. Both data types were acquired under a controlled acquisition protocol developed to minimize the distortion of the color Doppler data and hence to simplify the phase-unwrapping task. In addition to the qualitative assessment of the results, a quantitative assessment approach was developed to measure the success of the results. The results of our new algorithm have been compared on ultrasound data to those from other well-known algorithms, and it outperforms all of them.

A polarized low-coherence interferometry demodulation algorithm by recovering the absolute phase of a selected monochromatic frequency.

PubMed

Jiang, Junfeng; Wang, Shaohua; Liu, Tiegen; Liu, Kun; Yin, Jinde; Meng, Xiange; Zhang, Yimo; Wang, Shuang; Qin, Zunqi; Wu, Fan; Li, Dingjie

2012-07-30

A demodulation algorithm based on absolute phase recovery of a selected monochromatic frequency is proposed for optical fiber Fabry-Perot pressure sensing system. The algorithm uses Fourier transform to get the relative phase and intercept of the unwrapped phase-frequency linear fit curve to identify its interference-order, which are then used to recover the absolute phase. A simplified mathematical model of the polarized low-coherence interference fringes was established to illustrate the principle of the proposed algorithm. Phase unwrapping and the selection of monochromatic frequency were discussed in detail. Pressure measurement experiment was carried out to verify the effectiveness of the proposed algorithm. Results showed that the demodulation precision by our algorithm could reach up to 0.15kPa, which has been improved by 13 times comparing with phase slope based algorithm.

Quantification of susceptibility change at high-concentrated SPIO-labeled target by characteristic phase gradient recognition.

PubMed

Zhu, Haitao; Nie, Binbin; Liu, Hua; Guo, Hua; Demachi, Kazuyuki; Sekino, Masaki; Shan, Baoci

2016-05-01

Phase map cross-correlation detection and quantification may produce highlighted signal at superparamagnetic iron oxide nanoparticles, and distinguish them from other hypointensities. The method may quantify susceptibility change by performing least squares analysis between a theoretically generated magnetic field template and an experimentally scanned phase image. Because characteristic phase recognition requires the removal of phase wrap and phase background, additional steps of phase unwrapping and filtering may increase the chance of computing error and enlarge the inconsistence among algorithms. To solve problem, phase gradient cross-correlation and quantification method is developed by recognizing characteristic phase gradient pattern instead of phase image because phase gradient operation inherently includes unwrapping and filtering functions. However, few studies have mentioned the detectable limit of currently used phase gradient calculation algorithms. The limit may lead to an underestimation of large magnetic susceptibility change caused by high-concentrated iron accumulation. In this study, mathematical derivation points out the value of maximum detectable phase gradient calculated by differential chain algorithm in both spatial and Fourier domain. To break through the limit, a modified quantification method is proposed by using unwrapped forward differentiation for phase gradient generation. The method enlarges the detectable range of phase gradient measurement and avoids the underestimation of magnetic susceptibility. Simulation and phantom experiments were used to quantitatively compare different methods. In vivo application performs MRI scanning on nude mice implanted by iron-labeled human cancer cells. Results validate the limit of detectable phase gradient and the consequent susceptibility underestimation. Results also demonstrate the advantage of unwrapped forward differentiation compared with differential chain algorithms for susceptibility quantification at high-concentrated iron accumulation. Copyright © 2015 Elsevier Inc. All rights reserved.

Evaluation of a Cubature Kalman Filtering-Based Phase Unwrapping Method for Differential Interferograms with High Noise in Coal Mining Areas

PubMed Central

Liu, Wanli; Bian, Zhengfu; Liu, Zhenguo; Zhang, Qiuzhao

2015-01-01

Differential interferometric synthetic aperture radar has been shown to be effective for monitoring subsidence in coal mining areas. Phase unwrapping can have a dramatic influence on the monitoring result. In this paper, a filtering-based phase unwrapping algorithm in combination with path-following is introduced to unwrap differential interferograms with high noise in mining areas. It can perform simultaneous noise filtering and phase unwrapping so that the pre-filtering steps can be omitted, thus usually retaining more details and improving the detectable deformation. For the method, the nonlinear measurement model of phase unwrapping is processed using a simplified Cubature Kalman filtering, which is an effective and efficient tool used in many nonlinear fields. Three case studies are designed to evaluate the performance of the method. In Case 1, two tests are designed to evaluate the performance of the method under different factors including the number of multi-looks and path-guiding indexes. The result demonstrates that the unwrapped results are sensitive to the number of multi-looks and that the Fisher Distance is the most suitable path-guiding index for our study. Two case studies are then designed to evaluate the feasibility of the proposed phase unwrapping method based on Cubature Kalman filtering. The results indicate that, compared with the popular Minimum Cost Flow method, the Cubature Kalman filtering-based phase unwrapping can achieve promising results without pre-filtering and is an appropriate method for coal mining areas with high noise. PMID:26153776

Using digital inline holographic microscopy and quantitative phase contrast imaging to assess viability of cultured mammalian cells

NASA Astrophysics Data System (ADS)

Missan, Sergey; Hrytsenko, Olga

2015-03-01

Digital inline holographic microscopy was used to record holograms of mammalian cells (HEK293, B16, and E0771) in culture. The holograms have been reconstructed using Octopus software (4Deep inwater imaging) and phase shift maps were unwrapped using the FFT-based phase unwrapping algorithm. The unwrapped phase shifts were used to determine the maximum phase shifts in individual cells. Addition of 0.5 mM H2O2 to cell media produced rapid rounding of cultured cells, followed by cell membrane rupture. The cell morphology changes and cell membrane ruptures were detected in real time and were apparent in the unwrapped phase shift images. The results indicate that quantitative phase contrast imaging produced by the digital inline holographic microscope can be used for the label-free real time automated determination of cell viability and confluence in mammalian cell cultures.

Phase unwrapping algorithm using polynomial phase approximation and linear Kalman filter.

PubMed

Kulkarni, Rishikesh; Rastogi, Pramod

2018-02-01

A noise-robust phase unwrapping algorithm is proposed based on state space analysis and polynomial phase approximation using wrapped phase measurement. The true phase is approximated as a two-dimensional first order polynomial function within a small sized window around each pixel. The estimates of polynomial coefficients provide the measurement of phase and local fringe frequencies. A state space representation of spatial phase evolution and the wrapped phase measurement is considered with the state vector consisting of polynomial coefficients as its elements. Instead of using the traditional nonlinear Kalman filter for the purpose of state estimation, we propose to use the linear Kalman filter operating directly with the wrapped phase measurement. The adaptive window width is selected at each pixel based on the local fringe density to strike a balance between the computation time and the noise robustness. In order to retrieve the unwrapped phase, either a line-scanning approach or a quality guided strategy of pixel selection is used depending on the underlying continuous or discontinuous phase distribution, respectively. Simulation and experimental results are provided to demonstrate the applicability of the proposed method.

Weighted least squares phase unwrapping based on the wavelet transform

NASA Astrophysics Data System (ADS)

Chen, Jiafeng; Chen, Haiqin; Yang, Zhengang; Ren, Haixia

2007-01-01

The weighted least squares phase unwrapping algorithm is a robust and accurate method to solve phase unwrapping problem. This method usually leads to a large sparse linear equation system. Gauss-Seidel relaxation iterative method is usually used to solve this large linear equation. However, this method is not practical due to its extremely slow convergence. The multigrid method is an efficient algorithm to improve convergence rate. However, this method needs an additional weight restriction operator which is very complicated. For this reason, the multiresolution analysis method based on the wavelet transform is proposed. By applying the wavelet transform, the original system is decomposed into its coarse and fine resolution levels and an equivalent equation system with better convergence condition can be obtained. Fast convergence in separate coarse resolution levels speeds up the overall system convergence rate. The simulated experiment shows that the proposed method converges faster and provides better result than the multigrid method.

Phase processing for quantitative susceptibility mapping of regions with large susceptibility and lack of signal.

PubMed

Fortier, Véronique; Levesque, Ives R

2018-06-01

Phase processing impacts the accuracy of quantitative susceptibility mapping (QSM). Techniques for phase unwrapping and background removal have been proposed and demonstrated mostly in brain. In this work, phase processing was evaluated in the context of large susceptibility variations (Δχ) and negligible signal, in particular for susceptibility estimation using the iterative phase replacement (IPR) algorithm. Continuous Laplacian, region-growing, and quality-guided unwrapping were evaluated. For background removal, Laplacian boundary value (LBV), projection onto dipole fields (PDF), sophisticated harmonic artifact reduction for phase data (SHARP), variable-kernel sophisticated harmonic artifact reduction for phase data (V-SHARP), regularization enabled sophisticated harmonic artifact reduction for phase data (RESHARP), and 3D quadratic polynomial field removal were studied. Each algorithm was quantitatively evaluated in simulation and qualitatively in vivo. Additionally, IPR-QSM maps were produced to evaluate the impact of phase processing on the susceptibility in the context of large Δχ with negligible signal. Quality-guided unwrapping was the most accurate technique, whereas continuous Laplacian performed poorly in this context. All background removal algorithms tested resulted in important phase inaccuracies, suggesting that techniques used for brain do not translate well to situations where large Δχ and no or low signal are expected. LBV produced the smallest errors, followed closely by PDF. Results suggest that quality-guided unwrapping should be preferred, with PDF or LBV for background removal, for QSM in regions with large Δχ and negligible signal. This reduces the susceptibility inaccuracy introduced by phase processing. Accurate background removal remains an open question. Magn Reson Med 79:3103-3113, 2017. © 2017 International Society for Magnetic Resonance in Medicine. © 2017 International Society for Magnetic Resonance in Medicine.

Application of ALOS and Envisat Data in Improving Multi-Temporal InSAR Methods for Monitoring Damavand Volcano and Landslide Deformation in the Center of Alborz Mountains, North Iran

NASA Astrophysics Data System (ADS)

Vajedian, S.; Motagh, M.; Nilfouroushan, F.

2013-09-01

InSAR capacity to detect slow deformation over terrain areas is limited by temporal and geometric decorrelations. Multitemporal InSAR techniques involving Persistent Scatterer (Ps-InSAR) and Small Baseline (SBAS) are recently developed to compensate the decorrelation problems. Geometric decorrelation in mountainous areas especially for Envisat images makes phase unwrapping process difficult. To improve this unwrapping problem, we first modified phase filtering to make the wrapped phase image as smooth as possible. In addition, in order to improve unwrapping results, a modified unwrapping method has been developed. This method includes removing possible orbital and tropospheric effects. Topographic correction is done within three-dimensional unwrapping, Orbital and tropospheric corrections are done after unwrapping process. To evaluate the effectiveness of our improved method we tested the proposed algorithm by Envisat and ALOS dataset and compared our results with recently developed PS software (StaMAPS). In addition we used GPS observations for evaluating the modified method. The results indicate that our method improves the estimated deformation significantly.

Finding minimum spanning trees more efficiently for tile-based phase unwrapping

NASA Astrophysics Data System (ADS)

Sawaf, Firas; Tatam, Ralph P.

2006-06-01

The tile-based phase unwrapping method employs an algorithm for finding the minimum spanning tree (MST) in each tile. We first examine the properties of a tile's representation from a graph theory viewpoint, observing that it is possible to make use of a more efficient class of MST algorithms. We then describe a novel linear time algorithm which reduces the size of the MST problem by half at the least, and solves it completely at best. We also show how this algorithm can be applied to a tile using a sliding window technique. Finally, we show how the reduction algorithm can be combined with any other standard MST algorithm to achieve a more efficient hybrid, using Prim's algorithm for empirical comparison and noting that the reduction algorithm takes only 0.1% of the time taken by the overall hybrid.

Spatio-temporal phase retrieval in speckle interferometry with Hilbert transform and two-dimensional phase unwrapping

NASA Astrophysics Data System (ADS)

Li, Xiangyu; Huang, Zhanhua; Zhu, Meng; He, Jin; Zhang, Hao

2014-12-01

Hilbert transform (HT) is widely used in temporal speckle pattern interferometry, but errors from low modulations might propagate and corrupt the calculated phase. A spatio-temporal method for phase retrieval using temporal HT and spatial phase unwrapping is presented. In time domain, the wrapped phase difference between the initial and current states is directly determined by using HT. To avoid the influence of the low modulation intensity, the phase information between the two states is ignored. As a result, the phase unwrapping is shifted from time domain to space domain. A phase unwrapping algorithm based on discrete cosine transform is adopted by taking advantage of the information in adjacent pixels. An experiment is carried out with a Michelson-type interferometer to study the out-of-plane deformation field. High quality whole-field phase distribution maps with different fringe densities are obtained. Under the experimental conditions, the maximum number of fringes resolvable in a 416×416 frame is 30, which indicates a 15λ deformation along the direction of loading.

Interferometric synthetic aperture radar phase unwrapping based on sparse Markov random fields by graph cuts

NASA Astrophysics Data System (ADS)

Zhou, Lifan; Chai, Dengfeng; Xia, Yu; Ma, Peifeng; Lin, Hui

2018-01-01

Phase unwrapping (PU) is one of the key processes in reconstructing the digital elevation model of a scene from its interferometric synthetic aperture radar (InSAR) data. It is known that two-dimensional (2-D) PU problems can be formulated as maximum a posteriori estimation of Markov random fields (MRFs). However, considering that the traditional MRF algorithm is usually defined on a rectangular grid, it fails easily if large parts of the wrapped data are dominated by noise caused by large low-coherence area or rapid-topography variation. A PU solution based on sparse MRF is presented to extend the traditional MRF algorithm to deal with sparse data, which allows the unwrapping of InSAR data dominated by high phase noise. To speed up the graph cuts algorithm for sparse MRF, we designed dual elementary graphs and merged them to obtain the Delaunay triangle graph, which is used to minimize the energy function efficiently. The experiments on simulated and real data, compared with other existing algorithms, both confirm the effectiveness of the proposed MRF approach, which suffers less from decorrelation effects caused by large low-coherence area or rapid-topography variation.

Comparison of phase unwrapping algorithms for topography reconstruction based on digital speckle pattern interferometry

NASA Astrophysics Data System (ADS)

Li, Yuanbo; Cui, Xiaoqian; Wang, Hongbei; Zhao, Mengge; Ding, Hongbin

2017-10-01

Digital speckle pattern interferometry (DSPI) can diagnose the topography evolution in real-time, continuous and non-destructive, and has been considered as a most promising technique for Plasma-Facing Components (PFCs) topography diagnostic under the complicated environment of tokamak. It is important for the study of digital speckle pattern interferometry to enhance speckle patterns and obtain the real topography of the ablated crater. In this paper, two kinds of numerical model based on flood-fill algorithm has been developed to obtain the real profile by unwrapping from the wrapped phase in speckle interference pattern, which can be calculated through four intensity images by means of 4-step phase-shifting technique. During the process of phase unwrapping by means of flood-fill algorithm, since the existence of noise pollution, and other inevitable factors will lead to poor quality of the reconstruction results, this will have an impact on the authenticity of the restored topography. The calculation of the quality parameters was introduced to obtain the quality-map from the wrapped phase map, this work presents two different methods to calculate the quality parameters. Then quality parameters are used to guide the path of flood-fill algorithm, and the pixels with good quality parameters are given priority calculation, so that the quality of speckle interference pattern reconstruction results are improved. According to the comparison between the flood-fill algorithm which is suitable for speckle pattern interferometry and the quality-guided flood-fill algorithm (with two different calculation approaches), the errors which caused by noise pollution and the discontinuous of the strips were successfully reduced.

Efficient Phase Unwrapping Architecture for Digital Holographic Microscopy

PubMed Central

Hwang, Wen-Jyi; Cheng, Shih-Chang; Cheng, Chau-Jern

2011-01-01

This paper presents a novel phase unwrapping architecture for accelerating the computational speed of digital holographic microscopy (DHM). A fast Fourier transform (FFT) based phase unwrapping algorithm providing a minimum squared error solution is adopted for hardware implementation because of its simplicity and robustness to noise. The proposed architecture is realized in a pipeline fashion to maximize throughput of the computation. Moreover, the number of hardware multipliers and dividers are minimized to reduce the hardware costs. The proposed architecture is used as a custom user logic in a system on programmable chip (SOPC) for physical performance measurement. Experimental results reveal that the proposed architecture is effective for expediting the computational speed while consuming low hardware resources for designing an embedded DHM system. PMID:22163688

Phase estimation for magnetic resonance imaging near metal prostheses

NASA Astrophysics Data System (ADS)

Bones, Philip J.; King, Laura J.; Millane, Rick P.

2015-09-01

Magnetic resonance imaging (MRI) has the potential to be the best technique for assessing complications in patients with metal orthopedic implants. The presence of fat can obscure definition of the other soft tissues in MRI images, so fat suppression is often required. However, the performance of existing fat suppression techniques is inadequate near implants, due to very significant magnetic field perturbations induced by the metal. The three-point Dixon technique is potentially a method of choice as it is able to suppress fat in the presence of inhomogeneities, but the success of this technique depends on being able to accurately calculate the phase shift. This is generally done using phase unwrapping and/or iterative reconstruction algorithms. Most current phase unwrapping techniques assume that the phase function is slowly varying and phase differences between adjacent points are limited to less than π radians in magnitude. Much greater phase differences can be present near metal implants. We present our experience with two phase unwrapping techniques which have been adapted to use prior knowledge of the implant. The first method identifies phase discontinuities before recovering the phase along paths through the image. The second method employs a transform to find the least squares solution to the unwrapped phase. Simulation results indicate that the methods show promise.

A Constant Envelope OFDM Implementation on GNU Radio

DTIC Science & Technology

2015-02-02

more advanced schemes like Decision Feedback Equalization or Turbo Equalization must be implemented to avoid the noise enhancement that all linear...block is coded in C++, and uses the phase unwrapping algorithm similar to MATLABs unwrap() function. To avoid false wraps propagating throughout the...outperform the real-time GNU radio implementation at higher SNR’s. While the unequalized experiment with the Matlab processor usually stayed within 5

TanDEM-X calibrated Raw DEM generation

NASA Astrophysics Data System (ADS)

Rossi, Cristian; Rodriguez Gonzalez, Fernando; Fritz, Thomas; Yague-Martinez, Nestor; Eineder, Michael

2012-09-01

The TanDEM-X mission successfully started on June 21st 2010 with the launch of the German radar satellite TDX, placed in orbit in close formation with the TerraSAR-X (TSX) satellite, and establishing the first spaceborne bistatic interferometer. The processing of SAR raw data to the Raw DEM is performed by one single processor, the Integrated TanDEM-X Processor (ITP). The quality of the Raw DEM is a fundamental parameter for the mission planning. In this paper, a novel quality indicator is derived. It is based on the comparison of the interferometric measure, the unwrapped phase, and the stereo-radargrammetric measure, the geometrical shifts computed in the coregistration stage. By stating the accuracy of the unwrapped phase, it constitutes a useful parameter for the determination of problematic scenes, which will be resubmitted to the dual baseline phase unwrapping processing chain for the mitigation of phase unwrapping errors. The stereo-radargrammetric measure is also operationally used for the Raw DEM absolute calibration through an accurate estimation of the absolute phase offset. This paper examines the interferometric algorithms implemented for the operational TanDEM-X Raw DEM generation, focusing particularly on its quality assessment and its calibration.

Phase gradient imaging for positive contrast generation to superparamagnetic iron oxide nanoparticle-labeled targets in magnetic resonance imaging.

PubMed

Zhu, Haitao; Demachi, Kazuyuki; Sekino, Masaki

2011-09-01

Positive contrast imaging methods produce enhanced signal at large magnetic field gradient in magnetic resonance imaging. Several postprocessing algorithms, such as susceptibility gradient mapping and phase gradient mapping methods, have been applied for positive contrast generation to detect the cells targeted by superparamagnetic iron oxide nanoparticles. In the phase gradient mapping methods, smoothness condition has to be satisfied to keep the phase gradient unwrapped. Moreover, there has been no discussion about the truncation artifact associated with the algorithm of differentiation that is performed in k-space by the multiplication with frequency value. In this work, phase gradient methods are discussed by considering the wrapping problem when the smoothness condition is not satisfied. A region-growing unwrapping algorithm is used in the phase gradient image to solve the problem. In order to reduce the truncation artifact, a cosine function is multiplied in the k-space to eliminate the abrupt change at the boundaries. Simulation, phantom and in vivo experimental results demonstrate that the modified phase gradient mapping methods may produce improved positive contrast effects by reducing truncation or wrapping artifacts. Copyright © 2011 Elsevier Inc. All rights reserved.

Research and implementation of the algorithm for unwrapped and distortion correction basing on CORDIC for panoramic image

NASA Astrophysics Data System (ADS)

Zhang, Zhenhai; Li, Kejie; Wu, Xiaobing; Zhang, Shujiang

2008-03-01

The unwrapped and correcting algorithm based on Coordinate Rotation Digital Computer (CORDIC) and bilinear interpolation algorithm was presented in this paper, with the purpose of processing dynamic panoramic annular image. An original annular panoramic image captured by panoramic annular lens (PAL) can be unwrapped and corrected to conventional rectangular image without distortion, which is much more coincident with people's vision. The algorithm for panoramic image processing is modeled by VHDL and implemented in FPGA. The experimental results show that the proposed panoramic image algorithm for unwrapped and distortion correction has the lower computation complexity and the architecture for dynamic panoramic image processing has lower hardware cost and power consumption. And the proposed algorithm is valid.

Two-dimensional phase unwrapping using robust derivative estimation and adaptive integration.

PubMed

Strand, Jarle; Taxt, Torfinn

2002-01-01

The adaptive integration (ADI) method for two-dimensional (2-D) phase unwrapping is presented. The method uses an algorithm for noise robust estimation of partial derivatives, followed by a noise robust adaptive integration process. The ADI method can easily unwrap phase images with moderate noise levels, and the resulting images are congruent modulo 2pi with the observed, wrapped, input images. In a quantitative evaluation, both the ADI and the BLS methods (Strand et al.) were better than the least-squares methods of Ghiglia and Romero (GR), and of Marroquin and Rivera (MRM). In a qualitative evaluation, the ADI, the BLS, and a conjugate gradient version of the MRM method (MRMCG), were all compared using a synthetic image with shear, using 115 magnetic resonance images, and using 22 fiber-optic interferometry images. For the synthetic image and the interferometry images, the ADI method gave consistently visually better results than the other methods. For the MR images, the MRMCG method was best, and the ADI method second best. The ADI method was less sensitive to the mask definition and the block size than the BLS method, and successfully unwrapped images with shears that were not marked in the masks. The computational requirements of the ADI method for images of nonrectangular objects were comparable to only two iterations of many least-squares-based methods (e.g., GR). We believe the ADI method provides a powerful addition to the ensemble of tools available for 2-D phase unwrapping.

A three-dimensional quality-guided phase unwrapping method for MR elastography

NASA Astrophysics Data System (ADS)

Wang, Huifang; Weaver, John B.; Perreard, Irina I.; Doyley, Marvin M.; Paulsen, Keith D.

2011-07-01

Magnetic resonance elastography (MRE) uses accumulated phases that are acquired at multiple, uniformly spaced relative phase offsets, to estimate harmonic motion information. Heavily wrapped phase occurs when the motion is large and unwrapping procedures are necessary to estimate the displacements required by MRE. Two unwrapping methods were developed and compared in this paper. The first method is a sequentially applied approach. The three-dimensional MRE phase image block for each slice was processed by two-dimensional unwrapping followed by a one-dimensional phase unwrapping approach along the phase-offset direction. This unwrapping approach generally works well for low noise data. However, there are still cases where the two-dimensional unwrapping method fails when noise is high. In this case, the baseline of the corrupted regions within an unwrapped image will not be consistent. Instead of separating the two-dimensional and one-dimensional unwrapping in a sequential approach, an interleaved three-dimensional quality-guided unwrapping method was developed to combine both the two-dimensional phase image continuity and one-dimensional harmonic motion information. The quality of one-dimensional harmonic motion unwrapping was used to guide the three-dimensional unwrapping procedures and it resulted in stronger guidance than in the sequential method. In this work, in vivo results generated by the two methods were compared.

High Resolution Deformation Time Series Estimation for Distributed Scatterers Using Terrasar-X Data

NASA Astrophysics Data System (ADS)

Goel, K.; Adam, N.

2012-07-01

In recent years, several SAR satellites such as TerraSAR-X, COSMO-SkyMed and Radarsat-2 have been launched. These satellites provide high resolution data suitable for sophisticated interferometric applications. With shorter repeat cycles, smaller orbital tubes and higher bandwidth of the satellites; deformation time series analysis of distributed scatterers (DSs) is now supported by a practical data basis. Techniques for exploiting DSs in non-urban (rural) areas include the Small Baseline Subset Algorithm (SBAS). However, it involves spatial phase unwrapping, and phase unwrapping errors are typically encountered in rural areas and are difficult to detect. In addition, the SBAS technique involves a rectangular multilooking of the differential interferograms to reduce phase noise, resulting in a loss of resolution and superposition of different objects on ground. In this paper, we introduce a new approach for deformation monitoring with a focus on DSs, wherein, there is no need to unwrap the differential interferograms and the deformation is mapped at object resolution. It is based on a robust object adaptive parameter estimation using single look differential interferograms, where, the local tilts of deformation velocity and local slopes of residual DEM in range and azimuth directions are estimated. We present here the technical details and a processing example of this newly developed algorithm.

A General Formulation for Robust and Efficient Integration of Finite Differences and Phase Unwrapping on Sparse Multidimensional Domains

NASA Astrophysics Data System (ADS)

Costantini, Mario; Malvarosa, Fabio; Minati, Federico

2010-03-01

Phase unwrapping and integration of finite differences are key problems in several technical fields. In SAR interferometry and differential and persistent scatterers interferometry digital elevation models and displacement measurements can be obtained after unambiguously determining the phase values and reconstructing the mean velocities and elevations of the observed targets, which can be performed by integrating differential estimates of these quantities (finite differences between neighboring points).In this paper we propose a general formulation for robust and efficient integration of finite differences and phase unwrapping, which includes standard techniques methods as sub-cases. The proposed approach allows obtaining more reliable and accurate solutions by exploiting redundant differential estimates (not only between nearest neighboring points) and multi-dimensional information (e.g. multi-temporal, multi-frequency, multi-baseline observations), or external data (e.g. GPS measurements). The proposed approach requires the solution of linear or quadratic programming problems, for which computationally efficient algorithms exist.The validation tests obtained on real SAR data confirm the validity of the method, which was integrated in our production chain and successfully used also in massive productions.

The ZpiM algorithm: a method for interferometric image reconstruction in SAR/SAS.

PubMed

Dias, José M B; Leitao, José M N

2002-01-01

This paper presents an effective algorithm for absolute phase (not simply modulo-2-pi) estimation from incomplete, noisy and modulo-2pi observations in interferometric aperture radar and sonar (InSAR/InSAS). The adopted framework is also representative of other applications such as optical interferometry, magnetic resonance imaging and diffraction tomography. The Bayesian viewpoint is adopted; the observation density is 2-pi-periodic and accounts for the interferometric pair decorrelation and system noise; the a priori probability of the absolute phase is modeled by a compound Gauss-Markov random field (CGMRF) tailored to piecewise smooth absolute phase images. We propose an iterative scheme for the computation of the maximum a posteriori probability (MAP) absolute phase estimate. Each iteration embodies a discrete optimization step (Z-step), implemented by network programming techniques and an iterative conditional modes (ICM) step (pi-step). Accordingly, the algorithm is termed ZpiM, where the letter M stands for maximization. An important contribution of the paper is the simultaneous implementation of phase unwrapping (inference of the 2pi-multiples) and smoothing (denoising of the observations). This improves considerably the accuracy of the absolute phase estimates compared to methods in which the data is low-pass filtered prior to unwrapping. A set of experimental results, comparing the proposed algorithm with alternative methods, illustrates the effectiveness of our approach.

Robust dynamic 3-D measurements with motion-compensated phase-shifting profilometry

NASA Astrophysics Data System (ADS)

Feng, Shijie; Zuo, Chao; Tao, Tianyang; Hu, Yan; Zhang, Minliang; Chen, Qian; Gu, Guohua

2018-04-01

Phase-shifting profilometry (PSP) is a widely used approach to high-accuracy three-dimensional shape measurements. However, when it comes to moving objects, phase errors induced by the movement often result in severe artifacts even though a high-speed camera is in use. From our observations, there are three kinds of motion artifacts: motion ripples, motion-induced phase unwrapping errors, and motion outliers. We present a novel motion-compensated PSP to remove the artifacts for dynamic measurements of rigid objects. The phase error of motion ripples is analyzed for the N-step phase-shifting algorithm and is compensated using the statistical nature of the fringes. The phase unwrapping errors are corrected exploiting adjacent reliable pixels, and the outliers are removed by comparing the original phase map with a smoothed phase map. Compared with the three-step PSP, our method can improve the accuracy by more than 95% for objects in motion.

Phase retrieval algorithm for JWST Flight and Testbed Telescope

NASA Astrophysics Data System (ADS)

Dean, Bruce H.; Aronstein, David L.; Smith, J. Scott; Shiri, Ron; Acton, D. Scott

2006-06-01

An image-based wavefront sensing and control algorithm for the James Webb Space Telescope (JWST) is presented. The algorithm heritage is discussed in addition to implications for algorithm performance dictated by NASA's Technology Readiness Level (TRL) 6. The algorithm uses feedback through an adaptive diversity function to avoid the need for phase-unwrapping post-processing steps. Algorithm results are demonstrated using JWST Testbed Telescope (TBT) commissioning data and the accuracy is assessed by comparison with interferometer results on a multi-wave phase aberration. Strategies for minimizing aliasing artifacts in the recovered phase are presented and orthogonal basis functions are implemented for representing wavefronts in irregular hexagonal apertures. Algorithm implementation on a parallel cluster of high-speed digital signal processors (DSPs) is also discussed.

Sequential Bayesian Filters for Estimating Time Series of Wrapped and Unwrapped Angles with Hyperparameter Estimation

NASA Astrophysics Data System (ADS)

Umehara, Hiroaki; Okada, Masato; Naruse, Yasushi

2018-03-01

The estimation of angular time series data is a widespread issue relating to various situations involving rotational motion and moving objects. There are two kinds of problem settings: the estimation of wrapped angles, which are principal values in a circular coordinate system (e.g., the direction of an object), and the estimation of unwrapped angles in an unbounded coordinate system such as for the positioning and tracking of moving objects measured by the signal-wave phase. Wrapped angles have been estimated in previous studies by sequential Bayesian filtering; however, the hyperparameters that are to be solved and that control the properties of the estimation model were given a priori. The present study establishes a procedure of hyperparameter estimation from the observation data of angles only, using the framework of Bayesian inference completely as the maximum likelihood estimation. Moreover, the filter model is modified to estimate the unwrapped angles. It is proved that without noise our model reduces to the existing algorithm of Itoh's unwrapping transform. It is numerically confirmed that our model is an extension of unwrapping estimation from Itoh's unwrapping transform to the case with noise.

Time series analysis of Mexico City subsidence constrained by radar interferometry

NASA Astrophysics Data System (ADS)

López-Quiroz, Penélope; Doin, Marie-Pierre; Tupin, Florence; Briole, Pierre; Nicolas, Jean-Marie

2009-09-01

In Mexico City, subsidence rates reach up to 40 cm/yr mainly due to soil compaction led by the over exploitation of the Mexico Basin aquifer. In this paper, we map the spatial and temporal patterns of the Mexico City subsidence by differential radar interferometry, using 38 ENVISAT images acquired between end of 2002 and beginning of 2007. We present the severe interferogram unwrapping problems partly due to the coherence loss but mostly due to the high fringe rates. These difficulties are overcome by designing a new methodology that helps the unwrapping step. Our approach is based on the fact that the deformation shape is stable for similar time intervals during the studied period. As a result, a stack of the five best interferograms can be used to compute an average deformation rate for a fixed time interval. Before unwrapping, the number of fringes is then decreased in wrapped interferograms using a scaled version of the stack together with the estimation of the atmospheric phase contribution related with the troposphere vertical stratification. The residual phase, containing less fringes, is more easily unwrapped than the original interferogram. The unwrapping procedure is applied in three iterative steps. The 71 small baseline unwrapped interferograms are inverted to obtain increments of radar propagation delays between the 38 acquisition dates. Based on the redundancy of the interferometric data base, we quantify the unwrapping errors and show that they are strongly decreased by iterations in the unwrapping process. A map of the RMS interferometric system misclosure allows to define the unwrapping reliability for each pixel. Finally, we present a new algorithm for time series analysis that differs from classical SVD decomposition and is best suited to the present data base. Accurate deformation time series are then derived over the metropolitan area of the city with a spatial resolution of 30 × 30 m.

2-D weighted least-squares phase unwrapping

DOEpatents

Ghiglia, Dennis C.; Romero, Louis A.

1995-01-01

Weighted values of interferometric signals are unwrapped by determining the least squares solution of phase unwrapping for unweighted values of the interferometric signals; and then determining the least squares solution of phase unwrapping for weighted values of the interferometric signals by preconditioned conjugate gradient methods using the unweighted solutions as preconditioning values. An output is provided that is representative of the least squares solution of phase unwrapping for weighted values of the interferometric signals.

2-D weighted least-squares phase unwrapping

DOEpatents

Ghiglia, D.C.; Romero, L.A.

1995-06-13

Weighted values of interferometric signals are unwrapped by determining the least squares solution of phase unwrapping for unweighted values of the interferometric signals; and then determining the least squares solution of phase unwrapping for weighted values of the interferometric signals by preconditioned conjugate gradient methods using the unweighted solutions as preconditioning values. An output is provided that is representative of the least squares solution of phase unwrapping for weighted values of the interferometric signals. 6 figs.

Quantitative evaluation of phase processing approaches in susceptibility weighted imaging

NASA Astrophysics Data System (ADS)

Li, Ningzhi; Wang, Wen-Tung; Sati, Pascal; Pham, Dzung L.; Butman, John A.

2012-03-01

Susceptibility weighted imaging (SWI) takes advantage of the local variation in susceptibility between different tissues to enable highly detailed visualization of the cerebral venous system and sensitive detection of intracranial hemorrhages. Thus, it has been increasingly used in magnetic resonance imaging studies of traumatic brain injury as well as other intracranial pathologies. In SWI, magnitude information is combined with phase information to enhance the susceptibility induced image contrast. Because of global susceptibility variations across the image, the rate of phase accumulation varies widely across the image resulting in phase wrapping artifacts that interfere with the local assessment of phase variation. Homodyne filtering is a common approach to eliminate this global phase variation. However, filter size requires careful selection in order to preserve image contrast and avoid errors resulting from residual phase wraps. An alternative approach is to apply phase unwrapping prior to high pass filtering. A suitable phase unwrapping algorithm guarantees no residual phase wraps but additional computational steps are required. In this work, we quantitatively evaluate these two phase processing approaches on both simulated and real data using different filters and cutoff frequencies. Our analysis leads to an improved understanding of the relationship between phase wraps, susceptibility effects, and acquisition parameters. Although homodyne filtering approaches are faster and more straightforward, phase unwrapping approaches perform more accurately in a wider variety of acquisition scenarios.

High-speed three-dimensional shape measurement for dynamic scenes using bi-frequency tripolar pulse-width-modulation fringe projection

NASA Astrophysics Data System (ADS)

Zuo, Chao; Chen, Qian; Gu, Guohua; Feng, Shijie; Feng, Fangxiaoyu; Li, Rubin; Shen, Guochen

2013-08-01

This paper introduces a high-speed three-dimensional (3-D) shape measurement technique for dynamic scenes by using bi-frequency tripolar pulse-width-modulation (TPWM) fringe projection. Two wrapped phase maps with different wavelengths can be obtained simultaneously by our bi-frequency phase-shifting algorithm. Then the two phase maps are unwrapped using a simple look-up-table based number-theoretical approach. To guarantee the robustness of phase unwrapping as well as the high sinusoidality of projected patterns, TPWM technique is employed to generate ideal fringe patterns with slight defocus. We detailed our technique, including its principle, pattern design, and system setup. Several experiments on dynamic scenes were performed, verifying that our method can achieve a speed of 1250 frames per second for fast, dense, and accurate 3-D measurements.

Use of (N-1)-D expansions for N-D phase unwrapping in MRI

NASA Astrophysics Data System (ADS)

Bones, Philip J.; King, Laura J.; Millane, Rick P.

2017-09-01

In MRI the presence of metal implants causes severe artifacts in images and interferes with the usual techniques used to separate fat signals from other tissues. In the Dixon method, three images are acquired at different echo times to enable the variation in the magnetic field to be estimated. However, the estimate is represented as the phase of a complex quantity and therefore suffers from wrapping. High field gradients near the metal mean that the phase estimate is undersampled and therefore challenging to unwrap. We have developed POP, phase estimation by onion peeling, an algorithm which unwraps the phase along 1-D paths for a 2-D image obtained with the Dixon method. The unwrapping is initially performed along a closed path enclosing the implant and well separated from it. The recovered phase is expanded using a smooth periodic basis along the path. Then, path-by-path, the estimate is applied to the next path and then the expansion coefficients are estimated to best fit the wrapped measurements. We have successfully tested POP on MRI images of specially constructed phantoms and on a group of patients with hip implants. In principle, POP can be extended to 3-D imaging. In that case, POP would entail representing phase with a suitably smooth basis over a series of surfaces enclosing the implant (the "onion skins"), again beginning the phase estimation well away from the implant. An approach for this is proposed. Results are presented for fat and water separation for 2-D images of phantoms and actual patients. The practicality of the method and its employment in clinical MRI are discussed.

Iris unwrapping using the Bresenham circle algorithm for real-time iris recognition

NASA Astrophysics Data System (ADS)

Carothers, Matthew T.; Ngo, Hau T.; Rakvic, Ryan N.; Broussard, Randy P.

2015-02-01

An efficient parallel architecture design for the iris unwrapping process in a real-time iris recognition system using the Bresenham Circle Algorithm is presented in this paper. Based on the characteristics of the model parameters this algorithm was chosen over the widely used polar conversion technique as the iris unwrapping model. The architecture design is parallelized to increase the throughput of the system and is suitable for processing an inputted image size of 320 × 240 pixels in real-time using Field Programmable Gate Array (FPGA) technology. Quartus software is used to implement, verify, and analyze the design's performance using the VHSIC Hardware Description Language. The system's predicted processing time is faster than the modern iris unwrapping technique used today∗.

Phase unwrapping methods of corner reflector DInSAR monitoring slow ground deformation

NASA Astrophysics Data System (ADS)

Fu, Wenxue; Guo, Xiaofang; Tian, Qingjiu

2007-06-01

Difference interferometric Synthetic aperture radar (DInSAR) has turned out to be a very powerful technique for the measurement of land deformations, but it requires the observed area to be correlated, and coherence degradation will seriously affect the quality of interferogram. Corner reflector DInSAR (CRDInSAR) is a new technique in recently years, which can compensate for the limitation of the classical DInSAR. Due to the stable amplitude and phase performance of the reflector, the interferometric phase difference of the reflector can be used to monitor or measure the small and slowly ground deformation for the cases of large geometrical baseline and large time interval between acquisitions. Phase unwrapping is the process where the absolute phase is reconstructed from its principal value as accurately as possible. It is a key step in the analysis of DInSAR. The classical phase unwrapping methods are either of path following type or of minimum-norm type. However, if the coherence of the two images is very low, the both methods will get error result. In application of CRDInSAR, due to the scattered points, the phase unwrapping of corner reflectors is only dealt with on a sparse grid, so all the reflectors are connected with Delaunay triangulation firstly, which can be used to define neighboring points and elementary cycles. When the monitoring ground deformation is slow, that is unwrapped neighboring-CR phase gradients are supposed to equal their wrapped-phase counterparts, then path-following method and Phase unwrapping using Coefficient of Elevation-Phase-Relation can be used to phase unwrapping. However, in the cases of unwrapped gradients exceeding one-half cycle, minimum cost flow (MCF) method can be used to unwrap the interferogram.

Erratum: Erratum: Denoising Phase Unwrapping Algorithm for Precise Phase Shifting Interferometry

NASA Astrophysics Data System (ADS)

Phuc, Phan Huy; Rhee, Hyug-Gyo; Ghim, Young-Sik

2018-06-01

This is a revision of the reference list reported in the original article. In order to clear the contribution of the previous work on the incremental breadth-first search (IBFS) method applied to the PUMA algorithm, we add one more reference to the existing reference list, as in this erratum. Page 83 : In this paper, we propose an algorithm that modifies the Boykov-Kolmogorov (BK) algorithm using the incremental breadth-first search (IBFS) method [27, 28] to find paths from the source to the sink of a graph. [28] S. Ali, H. Khan, I. Shaik and F. Ali, Int. J. Eng. and Technol. 7, 254 (2015).

An advanced algorithm for deformation estimation in non-urban areas

NASA Astrophysics Data System (ADS)

Goel, Kanika; Adam, Nico

2012-09-01

This paper presents an advanced differential SAR interferometry stacking algorithm for high resolution deformation monitoring in non-urban areas with a focus on distributed scatterers (DSs). Techniques such as the Small Baseline Subset Algorithm (SBAS) have been proposed for processing DSs. SBAS makes use of small baseline differential interferogram subsets. Singular value decomposition (SVD), i.e. L2 norm minimization is applied to link independent subsets separated by large baselines. However, the interferograms used in SBAS are multilooked using a rectangular window to reduce phase noise caused for instance by temporal decorrelation, resulting in a loss of resolution and the superposition of topography and deformation signals from different objects. Moreover, these have to be individually phase unwrapped and this can be especially difficult in natural terrains. An improved deformation estimation technique is presented here which exploits high resolution SAR data and is suitable for rural areas. The implemented method makes use of small baseline differential interferograms and incorporates an object adaptive spatial phase filtering and residual topography removal for an accurate phase and coherence estimation, while preserving the high resolution provided by modern satellites. This is followed by retrieval of deformation via the SBAS approach, wherein, the phase inversion is performed using an L1 norm minimization which is more robust to the typical phase unwrapping errors encountered in non-urban areas. Meter resolution TerraSAR-X data of an underground gas storage reservoir in Germany is used for demonstrating the effectiveness of this newly developed technique in rural areas.

Insar Unwrapping Error Correction Based on Quasi-Accurate Detection of Gross Errors (quad)

NASA Astrophysics Data System (ADS)

Kang, Y.; Zhao, C. Y.; Zhang, Q.; Yang, C. S.

2018-04-01

Unwrapping error is a common error in the InSAR processing, which will seriously degrade the accuracy of the monitoring results. Based on a gross error correction method, Quasi-accurate detection (QUAD), the method for unwrapping errors automatic correction is established in this paper. This method identifies and corrects the unwrapping errors by establishing a functional model between the true errors and interferograms. The basic principle and processing steps are presented. Then this method is compared with the L1-norm method with simulated data. Results show that both methods can effectively suppress the unwrapping error when the ratio of the unwrapping errors is low, and the two methods can complement each other when the ratio of the unwrapping errors is relatively high. At last the real SAR data is tested for the phase unwrapping error correction. Results show that this new method can correct the phase unwrapping errors successfully in the practical application.

NASADEM Overview and First Results: Shuttle Radar Topography Mission (SRTM) Reprocessing and Improvements

NASA Astrophysics Data System (ADS)

Buckley, S.; Agram, P. S.; Belz, J. E.; Crippen, R. E.; Gurrola, E. M.; Hensley, S.; Kobrick, M.; Lavalle, M.; Martin, J. M.; Neumann, M.; Nguyen, Q.; Rosen, P. A.; Shimada, J.; Simard, M.; Tung, W.

2015-12-01

NASADEM is a significant modernization of SRTM digital elevation model (DEM) data supported by the NASA MEaSUREs program. We are reprocessing the raw radar signal data using improved algorithms and incorporating ICESat and ASTER-derived DEM data unavailable during the original processing. The NASADEM products will be freely-available through the Land Processes Distributed Active Archive Center (LPDAAC) at 1-arcsecond spacing. The most significant processing improvements involve void reduction through improved phase unwrapping and using ICESat data for control. The updated unwrapping strategy now includes the use of SNAPHU for data processing patches where the unwrapped coverage from the original residue-based unwrapper falls below a coverage threshold. In North America continental processing, first experiments show the strip void area is reduced by more than 50% and the number of strip void patches is reduced by 40%. Patch boundary voids are mitigated by reprocessing with a different starting burst and merging the unwrapping results. We also updated a low-resolution elevation database to aid with unwrapping bootstrapping, retaining isolated component of unwrapped phase, and assessing the quality of the strip DEMs. We introduce a height ripple error correction to reduce artifacts in the strip elevation data. These ripples are a few meters in size with along-track spatial scales of tens of kilometers and are due to uncompensated mast motion most pronounced after Shuttle roll angle adjustment maneuvers. We developed an along-track filter utilizing differences between the SRTM heights and ICESat lidar elevation data. For a test using all data over North America, the algorithm reduced the ICESat-SRTM bias from 80 cm to 3 cm and the RMS from 5m to 4m. After merging and regridding the SRTM strip DEMs into 1x1-degree tiles, remaining voids are primarily filled with the ASTER-derived Global DEM. We use a Delta Surface Fill method to rubbersheet fill data across the void for a seamless merger. We find this to provide a more accurate fill than cut-and-paste patching. A new post-processing module creates DEM-derived layers from the void-free elevation data. The slope/aspect & plan/profile curvatures are found by fitting a local quadratic surface to each DEM post and computing metrics from the fit coefficients.

High-precision real-time 3D shape measurement based on a quad-camera system

NASA Astrophysics Data System (ADS)

Tao, Tianyang; Chen, Qian; Feng, Shijie; Hu, Yan; Zhang, Minliang; Zuo, Chao

2018-01-01

Phase-shifting profilometry (PSP) based 3D shape measurement is well established in various applications due to its high accuracy, simple implementation, and robustness to environmental illumination and surface texture. In PSP, higher depth resolution generally requires higher fringe density of projected patterns which, in turn, lead to severe phase ambiguities that must be solved with additional information from phase coding and/or geometric constraints. However, in order to guarantee the reliability of phase unwrapping, available techniques are usually accompanied by increased number of patterns, reduced amplitude of fringe, and complicated post-processing algorithms. In this work, we demonstrate that by using a quad-camera multi-view fringe projection system and carefully arranging the relative spatial positions between the cameras and the projector, it becomes possible to completely eliminate the phase ambiguities in conventional three-step PSP patterns with high-fringe-density without projecting any additional patterns or embedding any auxiliary signals. Benefiting from the position-optimized quad-camera system, stereo phase unwrapping can be efficiently and reliably performed by flexible phase consistency checks. Besides, redundant information of multiple phase consistency checks is fully used through a weighted phase difference scheme to further enhance the reliability of phase unwrapping. This paper explains the 3D measurement principle and the basic design of quad-camera system, and finally demonstrates that in a large measurement volume of 200 mm × 200 mm × 400 mm, the resultant dynamic 3D sensing system can realize real-time 3D reconstruction at 60 frames per second with a depth precision of 50 μm.

Profilometry of three-dimensional discontinuous solids by combining two-steps temporal phase unwrapping, co-phased profilometry and phase-shifting interferometry

NASA Astrophysics Data System (ADS)

Servin, Manuel; Padilla, Moises; Garnica, Guillermo; Gonzalez, Adonai

2016-12-01

In this work we review and combine two techniques that have been recently published for three-dimensional (3D) fringe projection profilometry and phase unwrapping, namely: co-phased profilometry and 2-steps temporal phase-unwrapping. By combining these two methods we get a more accurate, higher signal-to-noise 3D profilometer for discontinuous industrial objects. In single-camera single-projector (standard) profilometry, the camera and the projector must form an angle between them. The phase-sensitivity of the profilometer depends on this angle, so it cannot be avoided. This angle produces regions with self-occluding shadows and glare from the solid as viewed from the camera's perspective, making impossible the demodulation of the fringe-pattern there. In other words, the phase data is undefined at those shadow regions. As published recently, this limitation can be solved by using several co-phased fringe-projectors and a single camera. These co-phased projectors are positioned at different directions towards the object, and as a consequence most shadows are compensated. In addition to this, most industrial objects are highly discontinuous, which precludes the use of spatial phase-unwrappers. One way to avoid spatial unwrapping is to decrease the phase-sensitivity to a point where the demodulated phase is bounded to one lambda, so the need for phase-unwrapping disappears. By doing this, however, the recovered non-wrapped phase contains too much harmonic distortion and noise. Using our recently proposed two-step temporal phase-unwrapping technique, the high-sensitivity phase is unwrapped using the low-frequency one as initial gross estimation. This two-step unwrapping technique solves the 3D object discontinuities while keeping the accuracy of the high-frequency profilometry data. In scientific research, new art are derived as logical and consistent result of previous efforts in the same direction. Here we present a new 3D-profilometer combining these two recently published methods: co-phased profilometry and two-steps temporal phase-unwrapping. By doing this, we obtain a new and more powerful 3D profilometry technique which overcomes the two main limitations of previous fringe-projection profilometers namely: high phase-sensitivity digitalization of discontinuous objects and solid's self-generated shadow minimization. This new 3D profilometer is demonstrated by an experiment digitizing a discontinuous 3D industrial-solid where the advantages of this new profilometer with respect to previous art are clearly shown.

A combined multi-interferogram algorithm for high resolution DEM reconstruction over deformed regions with TerraSAR-X data

NASA Astrophysics Data System (ADS)

Zhao, Chaoying; Qu, Feifei; Zhang, Qin; Zhu, Wu

2012-10-01

The accuracy of DEM generated with interferometric synthetic aperture radar (InSAR) technique mostly depends on phase unwrapping errors, atmospheric effects, baseline errors and phase noise. The first term is more serious if the high-resolution TerraSAR-X data over urban regions and mountainous regions are applied. In addition, the deformation effect cannot be neglected if the study regions are suffering from surface deformation within the SAR acquisition dates. In this paper, several measures have been taken to generate high resolution DEM over urban regions and mountainous regions with TerraSAR data. The SAR interferometric pairs are divided into two subsets: (a) DEM subsets and (b) deformation subsets. These two interferometric sets serve to generate DEM and deformation, respectively. The external DEM is applied to assist the phase unwrapping with "remove-restore" procedure. The deformation phase is re-scaled and subtracted from each DEM observations. Lastly, the stochastic errors including atmospheric effects and phase noise are suppressed by averaging heights from several interferograms with weights. Six TerraSAR-X data are applied to generate a 6-m-resolution DEM over Xi'an, China using these procedures. Both discrete GPS heights and local high resolution and high precision DEM data are applied to calibrate the DEM generated with our algorithm, and around 4.1 m precision is achieved.

Multibaseline interferometric SAR at millimeterwaves test of an algorithm on real data and a synthetic scene

NASA Astrophysics Data System (ADS)

Essen, Helmut; Brehm, Thorsten; Boehmsdorff, Stephan

2007-10-01

Interferometric Synthetic Aperture Radar has the capability to provide the user with the 3-D-Information of land surfaces. To gather data with high height estimation accuracy it is necessary to use a wide interferometric baseline or a high radar frequency. However the problem of resolving the phase ambiguity at smaller wavelengths is more critical than at longer wavelengths, as the unambiguous height interval is inversely proportional to the radar wavelength. To solve this shortcoming, a multiple baseline approach can be used with a number of neighbouring horns and an increasing baselength going from narrow to wide. The narrowest, corresponding to adjacent horns, is then assumed to be unambiguous in phase. This initial interferogram is used as a starting point for the algorithm, which in the next step, unwraps the interferogram with the next wider baseline using the coarse height information to solve the phase ambiguities. This process is repeated consecutively until the interferogram with highest precision is unwrapped. On the expense of this multi-channel-approach the algorithm is simple and robust, and even the amount of processing time is reduced considerably, compared to traditional methods. The multiple baseline approach is especially adequate for millimeterwave radars as antenna horns with relatively small aperture can be used, while a sufficient 3-dB beamwidth is maintained. The paper describes the multiple baseline algorithm and shows the results of tests on real data and a synthetic area. Possibilities and limitations of this approach are discussed. Examples of digital elevation maps derived from measured data at millimeterwaves are shown.

A high resolution InSAR topographic reconstruction research in urban area based on TerraSAR-X data

NASA Astrophysics Data System (ADS)

Qu, Feifei; Qin, Zhang; Zhao, Chaoying; Zhu, Wu

2011-10-01

Aiming at the problems of difficult unwrapping and phase noise in InSAR DEM reconstruction, especially for the high-resolution TerraSAR-X data, this paper improved the height reconstruction algorithm in view of "remove-restore" based on external coarse DEM and multi-interferogram processing, proposed a height calibration method based on CR+GPS data. Several measures have been taken for urban high resolution DEM reconstruction with TerraSAR data. The SAR interferometric pairs with long spatial and short temporal baselines are served for the DEM. The external low resolution and low accuracy DEM is applied for the "remove-restore" concept to ease the phase unwrapping. The stochastic errors including atmospheric effects and phase noise are suppressed by weighted averaging of DEM phases. Six TerraSAR-X data are applied to create the twelve-meter's resolution DEM over Xian, China with the newly-proposed method. The heights in discrete GPS benchmarks are used to calibrate the result, and the RMS of 3.29 meter is achieved by comparing with 1:50000 DEM.

Linear least squares approach for evaluating crack tip fracture parameters using isochromatic and isoclinic data from digital photoelasticity

NASA Astrophysics Data System (ADS)

Patil, Prataprao; Vyasarayani, C. P.; Ramji, M.

2017-06-01

In this work, digital photoelasticity technique is used to estimate the crack tip fracture parameters for different crack configurations. Conventionally, only isochromatic data surrounding the crack tip is used for SIF estimation, but with the advent of digital photoelasticity, pixel-wise availability of both isoclinic and isochromatic data could be exploited for SIF estimation in a novel way. A linear least square approach is proposed to estimate the mixed-mode crack tip fracture parameters by solving the multi-parameter stress field equation. The stress intensity factor (SIF) is extracted from those estimated fracture parameters. The isochromatic and isoclinic data around the crack tip is estimated using the ten-step phase shifting technique. To get the unwrapped data, the adaptive quality guided phase unwrapping algorithm (AQGPU) has been used. The mixed mode fracture parameters, especially SIF are estimated for specimen configurations like single edge notch (SEN), center crack and straight crack ahead of inclusion using the proposed algorithm. The experimental SIF values estimated using the proposed method are compared with analytical/finite element analysis (FEA) results, and are found to be in good agreement.

Phase retrieval without unwrapping by single-shot dual-wavelength digital holography

NASA Astrophysics Data System (ADS)

Min, Junwei; Yao, Baoli; Zhou, Meiling; Guo, Rongli; Lei, Ming; Yang, Yanlong; Dan, Dan; Yan, Shaohui; Peng, Tong

2014-12-01

A phase retrieval method by using single-shot dual-wavelength digital holography is proposed. Each single wavelength hologram is extracted from the color CCD recorded hologram at one exposure, and the unwrapped phase image of object can be reconstructed directly. Different from the traditional multiple wavelength phase unwrapping techniques, any single complex wave-fronts at different wavelengths have no need to be calculated any more. Thus, the phase retrieval is computationally fast and straightforward, and the limitations on the total optical path difference are significantly relaxed. The practicability of the proposed method is demonstrated by both simulated and experimental results.

A novel phase retrieval method from three-wavelength in-line phase-shifting interferograms based on positive negative 2π phase shifts

NASA Astrophysics Data System (ADS)

Xu, Xiaoqing; Wang, Yawei; Ji, Ying; Xu, Yuanyuan; Xie, Ming

2018-01-01

A new method to extract quantitative phases for each wavelength from three-wavelength in-line phase-shifting interferograms is proposed. Firstly, seven interferograms with positive negative 2π phase shifts are sequentially captured by using the phase-shifting technique. Secondly, six dc-term suppressed intensities can be achieved by the use of the algebraic algorithm. Finally, the wrapped phases at the three wavelengths can be acquired simultaneously from these six interferograms add-subtracting by employing the trigonometric function method. The surface morphology with increased ambiguity-free range at synthetic beat wavelength can be obtained, while maintaining the low noise precision of the single wavelength measurement, by combining this method with three-wavelength phase unwrapping method. We illustrate the principle of this algorithm, and the simulated experiments of the spherical cap and the HeLa cell are conducted to prove our proposed method, respectively.

Unwrapping eddy current compensation: improved compensation of eddy current induced baseline shifts in high-resolution phase-contrast MRI at 9.4 Tesla.

PubMed

Espe, Emil K S; Zhang, Lili; Sjaastad, Ivar

2014-10-01

Phase-contrast MRI (PC-MRI) is a versatile tool allowing evaluation of in vivo motion, but is sensitive to eddy current induced phase offsets, causing errors in the measured velocities. In high-resolution PC-MRI, these offsets can be sufficiently large to cause wrapping in the baseline phase, rendering conventional eddy current compensation (ECC) inadequate. The purpose of this study was to develop an improved ECC technique (unwrapping ECC) able to handle baseline phase discontinuities. Baseline phase discontinuities are unwrapped by minimizing the spatiotemporal standard deviation of the static-tissue phase. Computer simulations were used for demonstrating the theoretical foundation of the proposed technique. The presence of baseline wrapping was confirmed in high-resolution myocardial PC-MRI of a normal rat heart at 9.4 Tesla (T), and the performance of unwrapping ECC was compared with conventional ECC. Areas of phase wrapping in static regions were clearly evident in high-resolution PC-MRI. The proposed technique successfully eliminated discontinuities in the baseline, and resulted in significantly better ECC than the conventional approach. We report the occurrence of baseline phase wrapping in PC-MRI, and provide an improved ECC technique capable of handling its presence. Unwrapping ECC offers improved correction of eddy current induced baseline shifts in high-resolution PC-MRI. Copyright © 2013 Wiley Periodicals, Inc.

Full-Field Calibration of Color Camera Chromatic Aberration using Absolute Phase Maps.

PubMed

Liu, Xiaohong; Huang, Shujun; Zhang, Zonghua; Gao, Feng; Jiang, Xiangqian

2017-05-06

The refractive index of a lens varies for different wavelengths of light, and thus the same incident light with different wavelengths has different outgoing light. This characteristic of lenses causes images captured by a color camera to display chromatic aberration (CA), which seriously reduces image quality. Based on an analysis of the distribution of CA, a full-field calibration method based on absolute phase maps is proposed in this paper. Red, green, and blue closed sinusoidal fringe patterns are generated, consecutively displayed on an LCD (liquid crystal display), and captured by a color camera from the front viewpoint. The phase information of each color fringe is obtained using a four-step phase-shifting algorithm and optimum fringe number selection method. CA causes the unwrapped phase of the three channels to differ. These pixel deviations can be computed by comparing the unwrapped phase data of the red, blue, and green channels in polar coordinates. CA calibration is accomplished in Cartesian coordinates. The systematic errors introduced by the LCD are analyzed and corrected. Simulated results show the validity of the proposed method and experimental results demonstrate that the proposed full-field calibration method based on absolute phase maps will be useful for practical software-based CA calibration.

Phase unwrapping with a virtual Hartmann-Shack wavefront sensor.

PubMed

Akondi, Vyas; Falldorf, Claas; Marcos, Susana; Vohnsen, Brian

2015-10-05

The use of a spatial light modulator for implementing a digital phase-shifting (PS) point diffraction interferometer (PDI) allows tunability in fringe spacing and in achieving PS without the need for mechanically moving parts. However, a small amount of detector or scatter noise could affect the accuracy of wavefront sensing. Here, a novel method of wavefront reconstruction incorporating a virtual Hartmann-Shack (HS) wavefront sensor is proposed that allows easy tuning of several wavefront sensor parameters. The proposed method was tested and compared with a Fourier unwrapping method implemented on a digital PS PDI. The rewrapping of the Fourier reconstructed wavefronts resulted in phase maps that matched well the original wrapped phase and the performance was found to be more stable and accurate than conventional methods. Through simulation studies, the superiority of the proposed virtual HS phase unwrapping method is shown in comparison with the Fourier unwrapping method in the presence of noise. Further, combining the two methods could improve accuracy when the signal-to-noise ratio is sufficiently high.

Improved Topographic Mapping Through Multi-Baseline SAR Interferometry with MAP Estimation

NASA Astrophysics Data System (ADS)

Dong, Yuting; Jiang, Houjun; Zhang, Lu; Liao, Mingsheng; Shi, Xuguo

2015-05-01

There is an inherent contradiction between the sensitivity of height measurement and the accuracy of phase unwrapping for SAR interferometry (InSAR) over rough terrain. This contradiction can be resolved by multi-baseline InSAR analysis, which exploits multiple phase observations with different normal baselines to improve phase unwrapping accuracy, or even avoid phase unwrapping. In this paper we propose a maximum a posteriori (MAP) estimation method assisted by SRTM DEM data for multi-baseline InSAR topographic mapping. Based on our method, a data processing flow is established and applied in processing multi-baseline ALOS/PALSAR dataset. The accuracy of resultant DEMs is evaluated by using a standard Chinese national DEM of scale 1:10,000 as reference. The results show that multi-baseline InSAR can improve DEM accuracy compared with single-baseline case. It is noteworthy that phase unwrapping is avoided and the quality of multi-baseline InSAR DEM can meet the DTED-2 standard.

Coherent multiscale image processing using dual-tree quaternion wavelets.

PubMed

Chan, Wai Lam; Choi, Hyeokho; Baraniuk, Richard G

2008-07-01

The dual-tree quaternion wavelet transform (QWT) is a new multiscale analysis tool for geometric image features. The QWT is a near shift-invariant tight frame representation whose coefficients sport a magnitude and three phases: two phases encode local image shifts while the third contains image texture information. The QWT is based on an alternative theory for the 2-D Hilbert transform and can be computed using a dual-tree filter bank with linear computational complexity. To demonstrate the properties of the QWT's coherent magnitude/phase representation, we develop an efficient and accurate procedure for estimating the local geometrical structure of an image. We also develop a new multiscale algorithm for estimating the disparity between a pair of images that is promising for image registration and flow estimation applications. The algorithm features multiscale phase unwrapping, linear complexity, and sub-pixel estimation accuracy.

Deformation Estimation In Non-Urban Areas Exploiting High Resolution SAR Data

NASA Astrophysics Data System (ADS)

Goel, Kanika; Adam, Nico

2012-01-01

Advanced techniques such as the Small Baseline Subset Algorithm (SBAS) have been developed for terrain motion mapping in non-urban areas with a focus on extracting information from distributed scatterers (DSs). SBAS uses small baseline differential interferograms (to limit the effects of geometric decorrelation) and these are typically multilooked to reduce phase noise, resulting in loss of resolution. Various error sources e.g. phase unwrapping errors, topographic errors, temporal decorrelation and atmospheric effects also affect the interferometric phase. The aim of our work is an improved deformation monitoring in non-urban areas exploiting high resolution SAR data. The paper provides technical details and a processing example of a newly developed technique which incorporates an adaptive spatial phase filtering algorithm for an accurate high resolution differential interferometric stacking, followed by deformation retrieval via the SBAS approach where we perform the phase inversion using a more robust L1 norm minimization.

Time series analysis of Mexico City subsidence constrained by radar interferometry

NASA Astrophysics Data System (ADS)

Doin, Marie-Pierre; Lopez-Quiroz, Penelope; Yan, Yajing; Bascou, Pascale; Pinel, Virginie

2010-05-01

In Mexico City, subsidence rates reach up to 40 cm/yr mainly due to soil compaction led by the over exploitation of the Mexico Basin aquifer. The Mexico Valley, an endoreic basin surrounded by mountains, was in the past covered by large lakes. After the Spanish conquest, the lakes have almost completely disappeared, being progressively replaced by buildings of the current Mexican capital. The simplified hydrogeologic structure includes a superficial 50 to 300 m thick lacustrine aquitard overlying a thicker aquifer made of alluvial deposits. The aquitard layer plays a crucial role in the subsidence process due to the extremely high compressibility of its clay deposits separated by a less compressible sand layer where the biggest buildings of the city are anchored. The aquifer over-exploitation leads to a large scale 30m depression of its piezometric level, inducing water downwards flow in the clays, yielding compaction and subsidence. In order to quantitatively link subsidence to water pumping, the Mexico city subsidence needs to be mapped and analyzed through space and time. We map its spatial and temporal patterns by differential radar interferometry, using 38 ENVISAT images acquired between end of 2002 and beginning of 2007. We employ both a Permanent Scatterer (PS) and a small baseline (SBAS) approach. The main difficulty consists in the severe unwrapping problems mostly due to the high deformation rate. We develop a specific SBAS approach based on 71 differential interferograms with a perpendicular baseline smaller than 500 m and a temporal baseline smaller than 9 months, forming a redundant network linking all images: (1) To help the unwrapping step, we use the fact that the deformation shape is stable for similar time intervals during the studied period. As a result, a stack of the five best interferograms can be used to reduce the number of fringes in wrapped interferograms. (2) Based on the redundancy of the interferometric data base, we quantify the unwrapping errors for each pixel and show that they are strongly decreased by iterations in the unwrapping process. (3) Finally, we present a new algorithm for time series analysis that differs from classical SVD decomposition and is best suited to the present data base. Accurate deformation time series are then derived over the metropolitan area of the city with a spatial resolution of 30 × 30 m. We also use the Gamma-PS software on the same data set. The phase differences are unwrapped within small patches with respect to a reference point chosen in each patch, whose phase is in turn unwrapped relatively to a reference point common for the whole area of interest. After removing the modelled contribution of the linear displacement rate and DEM error, some residual interferograms, presenting unwrapping errors because of strong residual orbital ramp or atmospheric phase screen, are spatially unwrapped by a minimum cost-flow algorithm. The next steps are to estimate and remove the residual orbital ramp and to apply temporal low-pass filter to remove atmospheric contributions. The step by step comparison of the SBAS and PS approaches shows both methods complementarity. The SBAS analysis provide subsidence rates with an accuracy of a mm/yr over the whole basin in a large area, together with the subsidence non linear behavior through time, however at the expense of some spatial regularization. The PS method provides locally accurate and punctual deformation rates, but fails in this case to yield a good large scale map and the non linear temporal behavior of the subsidence. We conclude that the relative contrast in subsidence between individual buildings and infrastructure must be relatively small, on average of the order of 5mm/yr.

Mapping ground surface deformation using temporarily coherent point SAR interferometry: Application to Los Angeles Basin

USGS Publications Warehouse

Zhang, L.; Lu, Zhong; Ding, X.; Jung, H.-S.; Feng, G.; Lee, C.-W.

2012-01-01

Multi-temporal interferometric synthetic aperture radar (InSAR) is an effective tool to detect long-term seismotectonic motions by reducing the atmospheric artifacts, thereby providing more precise deformation signal. The commonly used approaches such as persistent scatterer InSAR (PSInSAR) and small baseline subset (SBAS) algorithms need to resolve the phase ambiguities in interferogram stacks either by searching a predefined solution space or by sparse phase unwrapping methods; however the efficiency and the success of phase unwrapping cannot be guaranteed. We present here an alternative approach – temporarily coherent point (TCP) InSAR (TCPInSAR) – to estimate the long term deformation rate without the need of phase unwrapping. The proposed approach has a series of innovations including TCP identification, TCP network and TCP least squares estimator. We apply the proposed method to the Los Angeles Basin in southern California where structurally active faults are believed capable of generating damaging earthquakes. The analysis is based on 55 interferograms from 32 ERS-1/2 images acquired during Oct. 1995 and Dec. 2000. To evaluate the performance of TCPInSAR on a small set of observations, a test with half of interferometric pairs is also performed. The retrieved TCPInSAR measurements have been validated by a comparison with GPS observations from Southern California Integrated GPS Network. Our result presents a similar deformation pattern as shown in past InSAR studies but with a smaller average standard deviation (4.6 mm) compared with GPS observations, indicating that TCPInSAR is a promising alternative for efficiently mapping ground deformation even from a relatively smaller set of interferograms.

Phase gradient algorithm based on co-axis two-step phase-shifting interferometry and its application

NASA Astrophysics Data System (ADS)

Wang, Yawei; Zhu, Qiong; Xu, Yuanyuan; Xin, Zhiduo; Liu, Jingye

2017-12-01

A phase gradient method based on co-axis two-step phase-shifting interferometry, is used to reveal the detailed information of a specimen. In this method, the phase gradient distribution can only be obtained by calculating both the first-order derivative and the radial Hilbert transformation of the intensity difference between two phase-shifted interferograms. The feasibility and accuracy of this method were fully verified by the simulation results for a polystyrene sphere and a red blood cell. The empirical results demonstrated that phase gradient is sensitive to changes in the refractive index and morphology. Because phase retrieval and tedious phase unwrapping are not required, the calculation speed is faster. In addition, co-axis interferometry has high spatial resolution.

Study on Landslide Disaster Extraction Method Based on Spaceborne SAR Remote Sensing Images - Take Alos Palsar for AN Example

NASA Astrophysics Data System (ADS)

Xue, D.; Yu, X.; Jia, S.; Chen, F.; Li, X.

2018-04-01

In this paper, sequence ALOS PALSAR data and airborne SAR data of L-band from June 5, 2008 to September 8, 2015 are used. Based on the research of SAR data preprocessing and core algorithms, such as geocode, registration, filtering, unwrapping and baseline estimation, the improved Goldstein filtering algorithm and the branch-cut path tracking algorithm are used to unwrap the phase. The DEM and surface deformation information of the experimental area were extracted. Combining SAR-specific geometry and differential interferometry, on the basis of composite analysis of multi-source images, a method of detecting landslide disaster combining coherence of SAR image is developed, which makes up for the deficiency of single SAR and optical remote sensing acquisition ability. Especially in bad weather and abnormal climate areas, the speed of disaster emergency and the accuracy of extraction are improved. It is found that the deformation in this area is greatly affected by faults, and there is a tendency of uplift in the southeast plain and western mountainous area, while in the southwest part of the mountain area there is a tendency to sink. This research result provides a basis for decision-making for local disaster prevention and control.

Quantitative phase imaging using a programmable wavefront sensor

NASA Astrophysics Data System (ADS)

Soldevila, F.; Durán, V.; Clemente, P.; Lancis, J.; Tajahuerce, E.

2018-02-01

We perform phase imaging using a non-interferometric approach to measure the complex amplitude of a wavefront. We overcome the limitations in spatial resolution, optical efficiency, and dynamic range that are found in Shack-Hartmann wavefront sensing. To do so, we sample the wavefront with a high-speed spatial light modulator. A single lens forms a time-dependent light distribution on its focal plane, where a position detector is placed. Our approach is lenslet-free and does not rely on any kind of iterative or unwrap algorithm. The validity of our technique is demonstrated by performing both aberration sensing and phase imaging of transparent samples.

A method to detect layover and shadow based on distributed spaceborne single-baseline InSAR

NASA Astrophysics Data System (ADS)

Yun, Ren; Huanxin, Zou; Shilin, Zhou; Hao, Sun; Kefeng, Ji

2014-03-01

Layover and Shadow are inevitable phenomenena in InSAR, which seriously destroy the continuity of interferometric phase images and present difficulties in the follow-up phase unwrapping. Thus, it's significant to detect layover and shadow. This paper presents an approach to detect layover and shadow using the auto-correlation matrix and amplitude of the two images. The method can make full use of the spatial information of neighboring pixels and effectively detect layover and shadow regions in the case of low registration accuracy. Experiment result on the simulated data verifies effectiveness of the algorithm.

Ground settlement monitoring based on temporarily coherent points between two SAR acquisitions

USGS Publications Warehouse

Zhang, L.; Ding, X.; Lu, Z.

2011-01-01

An InSAR analysis approach for identifying and extracting the temporarily coherent points (TCP) that exist between two SAR acquisitions and for determining motions of the TCP is presented for applications such as ground settlement monitoring. TCP are identified based on the spatial characteristics of the range and azimuth offsets of coherent radar scatterers. A method for coregistering TCP based on the offsets of TCP is given to reduce the coregistration errors at TCP. An improved phase unwrapping method based on the minimum cost flow (MCF) algorithm and local Delaunay triangulation is also proposed for sparse TCP data. The proposed algorithms are validated using a test site in Hong Kong. The test results show that the algorithms work satisfactorily for various ground features.

Effects of Heterogeneities on the Propagation, Scattering and Attenuation of Seismic Waves and the Characterization of Seismic Source

DTIC Science & Technology

1985-01-01

of Kilauea volcano , Hawaii . Science. 223. 165-167. 1984. Tribolet. J.M., A new phase unwrapping algorithm IEEE Trans. Acoust. Speech and Signal...34 under the Kilauea volcano using ä travel time inversion. He found a high velocity core of the volcano surrounding an interior lower velocity region...Helens volcano ’his -.vas a joint effort undertaken by Oregon State University. Massachusetts Institute of Technology, and f.he L’.S. Geological Survey

Large-baseline InSAR for precise topographic mapping: a framework for TanDEM-X large-baseline data

NASA Astrophysics Data System (ADS)

Pinheiro, Muriel; Reigber, Andreas; Moreira, Alberto

2017-09-01

The global Digital Elevation Model (DEM) resulting from the TanDEM-X mission provides information about the world topography with outstanding precision. In fact, performance analysis carried out with the already available data have shown that the global product is well within the requirements of 10 m absolute vertical accuracy and 2 m relative vertical accuracy for flat to moderate terrain. The mission's science phase took place from October 2014 to December 2015. During this phase, bistatic acquisitions with across-track separation between the two satellites up to 3.6 km at the equator were commanded. Since the relative vertical accuracy of InSAR derived elevation models is, in principle, inversely proportional to the system baseline, the TanDEM-X science phase opened the doors for the generation of elevation models with improved quality with respect to the standard product. However, the interferometric processing of the large-baseline data is troublesome due to the increased volume decorrelation and very high frequency of the phase variations. Hence, in order to fully profit from the increased baseline, sophisticated algorithms for the interferometric processing, and, in particular, for the phase unwrapping have to be considered. This paper proposes a novel dual-baseline region-growing framework for the phase unwrapping of the large-baseline interferograms. Results from two experiments with data from the TanDEM-X science phase are discussed, corroborating the expected increased level of detail of the large-baseline DEMs.

Structure function monitor

DOEpatents

McGraw, John T [Placitas, NM; Zimmer, Peter C [Albuquerque, NM; Ackermann, Mark R [Albuquerque, NM

2012-01-24

Methods and apparatus for a structure function monitor provide for generation of parameters characterizing a refractive medium. In an embodiment, a structure function monitor acquires images of a pupil plane and an image plane and, from these images, retrieves the phase over an aperture, unwraps the retrieved phase, and analyzes the unwrapped retrieved phase. In an embodiment, analysis yields atmospheric parameters measured at spatial scales from zero to the diameter of a telescope used to collect light from a source.

Reliable absolute analog code retrieval approach for 3D measurement

NASA Astrophysics Data System (ADS)

Yu, Shuang; Zhang, Jing; Yu, Xiaoyang; Sun, Xiaoming; Wu, Haibin; Chen, Deyun

2017-11-01

The wrapped phase of phase-shifting approach can be unwrapped by using Gray code, but both the wrapped phase error and Gray code decoding error can result in period jump error, which will lead to gross measurement error. Therefore, this paper presents a reliable absolute analog code retrieval approach. The combination of unequal-period Gray code and phase shifting patterns at high frequencies are used to obtain high-frequency absolute analog code, and at low frequencies, the same unequal-period combination patterns are used to obtain the low-frequency absolute analog code. Next, the difference between the two absolute analog codes was employed to eliminate period jump errors, and a reliable unwrapped result can be obtained. Error analysis was used to determine the applicable conditions, and this approach was verified through theoretical analysis. The proposed approach was further verified experimentally. Theoretical analysis and experimental results demonstrate that the proposed approach can perform reliable analog code unwrapping.

Linear programming phase unwrapping for dual-wavelength digital holography.

PubMed

Wang, Zhaomin; Jiao, Jiannan; Qu, Weijuan; Yang, Fang; Li, Hongru; Tian, Ailing; Asundi, Anand

2017-01-20

A linear programming phase unwrapping method in dual-wavelength digital holography is proposed and verified experimentally. The proposed method uses the square of height difference as a convergence standard and theoretically gives the boundary condition in a searching process. A simulation was performed by unwrapping step structures at different levels of Gaussian noise. As a result, our method is capable of recovering the discontinuities accurately. It is robust and straightforward. In the experiment, a microelectromechanical systems sample and a cylindrical lens were measured separately. The testing results were in good agreement with true values. Moreover, the proposed method is applicable not only in digital holography but also in other dual-wavelength interferometric techniques.

Robust water fat separated dual-echo MRI by phase-sensitive reconstruction.

PubMed

Romu, Thobias; Dahlström, Nils; Leinhard, Olof Dahlqvist; Borga, Magnus

2017-09-01

The purpose of this work was to develop and evaluate a robust water-fat separation method for T1-weighted symmetric two-point Dixon data. A method for water-fat separation by phase unwrapping of the opposite-phase images by phase-sensitive reconstruction (PSR) is introduced. PSR consists of three steps; (1), identification of clusters of tissue voxels; (2), unwrapping of the phase in each cluster by solving Poisson's equation; and (3), finding the correct sign of each unwrapped opposite-phase cluster, so that the water-fat images are assigned the correct identities. Robustness was evaluated by counting the number of water-fat swap artifacts in a total of 733 image volumes. The method was also compared to commercial software. In the water-fat separated image volumes, the PSR method failed to unwrap the phase of one cluster and misclassified 10. One swap was observed in areas affected by motion and was constricted to the affected area. Twenty swaps were observed surrounding susceptibility artifacts, none of which spread outside the artifact affected regions. The PSR method had fewer swaps when compared to commercial software. The PSR method can robustly produce water-fat separated whole-body images based on symmetric two-echo spoiled gradient echo images, under both ideal conditions and in the presence of common artifacts. Magn Reson Med 78:1208-1216, 2017. © 2016 International Society for Magnetic Resonance in Medicine. © 2016 International Society for Magnetic Resonance in Medicine.

Virtual pyramid wavefront sensor for phase unwrapping.

PubMed

Akondi, Vyas; Vohnsen, Brian; Marcos, Susana

2016-10-10

Noise affects wavefront reconstruction from wrapped phase data. A novel method of phase unwrapping is proposed with the help of a virtual pyramid wavefront sensor. The method was tested on noisy wrapped phase images obtained experimentally with a digital phase-shifting point diffraction interferometer. The virtuality of the pyramid wavefront sensor allows easy tuning of the pyramid apex angle and modulation amplitude. It is shown that an optimal modulation amplitude obtained by monitoring the Strehl ratio helps in achieving better accuracy. Through simulation studies and iterative estimation, it is shown that the virtual pyramid wavefront sensor is robust to random noise.

Spectroscopic Doppler analysis for visible-light optical coherence tomography

NASA Astrophysics Data System (ADS)

Shu, Xiao; Liu, Wenzhong; Duan, Lian; Zhang, Hao F.

2017-12-01

Retinal oxygen metabolic rate can be effectively measured by visible-light optical coherence tomography (vis-OCT), which simultaneously quantifies oxygen saturation and blood flow rate in retinal vessels through spectroscopic analysis and Doppler measurement, respectively. Doppler OCT relates phase variation between sequential A-lines to the axial flow velocity of the scattering medium. The detectable phase shift is between -π and π due to its periodicity, which limits the maximum measurable unambiguous velocity without phase unwrapping. Using shorter wavelengths, vis-OCT is more vulnerable to phase ambiguity since flow induced phase variation is linearly related to the center wavenumber of the probing light. We eliminated the need for phase unwrapping using spectroscopic Doppler analysis. We split the whole vis-OCT spectrum into a series of narrow subbands and reconstructed vis-OCT images to extract corresponding Doppler phase shifts in all the subbands. Then, we quantified flow velocity by analyzing subband-dependent phase shift using linear regression. In the phantom experiment, we showed that spectroscopic Doppler analysis extended the measurable absolute phase shift range without conducting phase unwrapping. We also tested this method to quantify retinal blood flow in rodents in vivo.

Ground settlement monitoring from temporarily persistent scatterers between two SAR acquisitions

USGS Publications Warehouse

Lei, Z.; Xiaoli, D.; Guangcai, F.; Zhong, L.

2009-01-01

We present an improved differential interferometric synthetic aperture radar (DInSAR) analysis method that measures motions of scatterers whose phases are stable between two SAR acquisitions. Such scatterers are referred to as temporarily persistent scatterers (TPS) for simplicity. Unlike the persistent scatterer InSAR (PS-InSAR) method that relies on a time-series of interferograms, the new algorithm needs only one interferogram. TPS are identified based on pixel offsets between two SAR images, and are specially coregistered based on their estimated offsets instead of a global polynomial for the whole image. Phase unwrapping is carried out based on an algorithm for sparse data points. The method is successfully applied to measure the settlement in the Hong Kong Airport area. The buildings surrounded by vegetation were successfully selected as TPS and the tiny deformation signal over the area was detected. ??2009 IEEE.

Evaluation of Airborne l- Band Multi-Baseline Pol-Insar for dem Extraction Beneath Forest Canopy

NASA Astrophysics Data System (ADS)

Li, W. M.; Chen, E. X.; Li, Z. Y.; Jiang, C.; Jia, Y.

2018-04-01

DEM beneath forest canopy is difficult to extract with optical stereo pairs, InSAR and Pol-InSAR techniques. Tomographic SAR (TomoSAR) based on different penetration and view angles could reflect vertical structure and ground structure. This paper aims at evaluating the possibility of TomoSAR for underlying DEM extraction. Airborne L-band repeat-pass Pol-InSAR collected in BioSAR 2008 campaign was applied to reconstruct the 3D structure of forest. And sum of kronecker product and algebraic synthesis algorithm were used to extract ground structure, and phase linking algorithm was applied to estimate ground phase. Then Goldstein cut-branch approach was used to unwrap the phases and then estimated underlying DEM. The average difference between the extracted underlying DEM and Lidar DEM is about 3.39 m in our test site. And the result indicates that it is possible for underlying DEM estimation with airborne L-band repeat-pass TomoSAR technique.

Extracting DEM from airborne X-band data based on PolInSAR

NASA Astrophysics Data System (ADS)

Hou, X. X.; Huang, G. M.; Zhao, Z.

2015-06-01

Polarimetric Interferometric Synthetic Aperture Radar (PolInSAR) is a new trend of SAR remote sensing technology which combined polarized multichannel information and Interferometric information. It is of great significance for extracting DEM in some regions with low precision of DEM such as vegetation coverage area and building concentrated area. In this paper we describe our experiments with high-resolution X-band full Polarimetric SAR data acquired by a dual-baseline interferometric airborne SAR system over an area of Danling in southern China. Pauli algorithm is used to generate the double polarimetric interferometry data, Singular Value Decomposition (SVD), Numerical Radius (NR) and Phase diversity (PD) methods are used to generate the full polarimetric interferometry data. Then we can make use of the polarimetric interferometric information to extract DEM with processing of pre filtering , image registration, image resampling, coherence optimization, multilook processing, flat-earth removal, interferogram filtering, phase unwrapping, parameter calibration, height derivation and geo-coding. The processing system named SARPlore has been exploited based on VC++ led by Chinese Academy of Surveying and Mapping. Finally compared optimization results with the single polarimetric interferometry, it has been observed that optimization ways can reduce the interferometric noise and the phase unwrapping residuals, and improve the precision of DEM. The result of full polarimetric interferometry is better than double polarimetric interferometry. Meanwhile, in different terrain, the result of full polarimetric interferometry will have a different degree of increase.

Phase Unwrapping in the Presence of Strong Turbulence

DTIC Science & Technology

2010-03-01

r a t i o n 49 h2=hh( IIndex ) ; 50 hhh =[(h2−de l ta4 ) (h2−de l ta3 ) h2 ( h2+de l ta3 ) ( h2+de l ta4 ) ] ; 51 121 52 f o r index=1:5 53 pha s e sh...i f t= hhh ( index ) ; 54 NonLS phase2 ( : , : , index ) = wrap wave ( w phase /(2∗ pi )−LS phase−pha s e sh i f t ) ; % wrapped waves 55 [ iwc l2...Index ] = min ( iwc l2 ) ; 60 UnwrappedPhase=LS phase+NonLS phase2 ( : , : , I Index ) ; 61 62 h= hhh ( IIndex ) ; % Get phase s h i f t from lowest

Phase retrieval in digital speckle pattern interferometry by use of a smoothed space-frequency distribution.

PubMed

Federico, Alejandro; Kaufmann, Guillermo H

2003-12-10

We evaluate the use of a smoothed space-frequency distribution (SSFD) to retrieve optical phase maps in digital speckle pattern interferometry (DSPI). The performance of this method is tested by use of computer-simulated DSPI fringes. Phase gradients are found along a pixel path from a single DSPI image, and the phase map is finally determined by integration. This technique does not need the application of a phase unwrapping algorithm or the introduction of carrier fringes in the interferometer. It is shown that a Wigner-Ville distribution with a smoothing Gaussian kernel gives more-accurate results than methods based on the continuous wavelet transform. We also discuss the influence of filtering on smoothing of the DSPI fringes and some additional limitations that emerge when this technique is applied. The performance of the SSFD method for processing experimental data is then illustrated.

Hyper thin 3D edge measurement of honeycomb core structures based on the triangular camera-projector layout & phase-based stereo matching.

PubMed

Jiang, Hongzhi; Zhao, Huijie; Li, Xudong; Quan, Chenggen

2016-03-07

We propose a novel hyper thin 3D edge measurement technique to measure the profile of 3D outer envelope of honeycomb core structures. The width of the edges of the honeycomb core is less than 0.1 mm. We introduce a triangular layout design consisting of two cameras and one projector to measure hyper thin 3D edges and eliminate data interference from the walls. A phase-shifting algorithm and the multi-frequency heterodyne phase-unwrapping principle are applied for phase retrievals on edges. A new stereo matching method based on phase mapping and epipolar constraint is presented to solve correspondence searching on the edges and remove false matches resulting in 3D outliers. Experimental results demonstrate the effectiveness of the proposed method for measuring the 3D profile of honeycomb core structures.

Optimized distortion correction technique for echo planar imaging.

PubMed

Chen , N K; Wyrwicz, A M

2001-03-01

A new phase-shifted EPI pulse sequence is described that encodes EPI phase errors due to all off-resonance factors, including B(o) field inhomogeneity, eddy current effects, and gradient waveform imperfections. Combined with the previously proposed multichannel modulation postprocessing algorithm (Chen and Wyrwicz, MRM 1999;41:1206-1213), the encoded phase error information can be used to effectively remove geometric distortions in subsequent EPI scans. The proposed EPI distortion correction technique has been shown to be effective in removing distortions due to gradient waveform imperfections and phase gradient-induced eddy current effects. In addition, this new method retains advantages of the earlier method, such as simultaneous correction of different off-resonance factors without use of a complicated phase unwrapping procedure. The effectiveness of this technique is illustrated with EPI studies on phantoms and animal subjects. Implementation to different versions of EPI sequences is also described. Magn Reson Med 45:525-528, 2001. Copyright 2001 Wiley-Liss, Inc.

Phase analysis for three-dimensional surface reconstruction of apples using structured-illumination reflectance imaging

NASA Astrophysics Data System (ADS)

Lu, Yuzhen; Lu, Renfu

2017-05-01

Three-dimensional (3-D) shape information is valuable for fruit quality evaluation. This study was aimed at developing phase analysis techniques for reconstruction of the 3-D surface of fruit from the pattern images acquired by a structuredillumination reflectance imaging (SIRI) system. Phase-shifted sinusoidal patterns, distorted by the fruit geometry, were acquired and processed through phase demodulation, phase unwrapping and other post-processing procedures to obtain phase difference maps relative to the phase of a reference plane. The phase maps were then transformed into height profiles and 3-D shapes in a world coordinate system based on phase-to-height and in-plane calibrations. A reference plane-based approach, coupled with the curve fitting technique using polynomials of order 3 or higher, was utilized for phase-to-height calibrations, which achieved superior accuracies with the root-mean-squared errors (RMSEs) of 0.027- 0.033 mm for a height measurement range of 0-91 mm. The 3rd-order polynomial curve fitting technique was further tested on two reference blocks with known heights, resulting in relative errors of 3.75% and 4.16%. In-plane calibrations were performed by solving a linear system formed by a number of control points in a calibration object, which yielded a RMSE of 0.311 mm. Tests of the calibrated system for reconstructing the surface of apple samples showed that surface concavities (i.e., stem/calyx regions) could be easily discriminated from bruises from the phase difference maps, reconstructed height profiles and the 3-D shape of apples. This study has laid a foundation for using SIRI for 3-D shape measurement, and thus expanded the capability of the technique for quality evaluation of horticultural products. Further research is needed to utilize the phase analysis techniques for stem/calyx detection of apples, and optimize the phase demodulation and unwrapping algorithms for faster and more reliable detection.

Super-sensitive two-wavelength fringe projection profilometry with 2-sensitivities temporal unwrapping

NASA Astrophysics Data System (ADS)

Servin, Manuel; Padilla, Moises; Garnica, Guillermo

2018-07-01

Since the early 1970s, optical two-wavelength phase-metrology (TWPM) has been used in a wide variety of experimental set ups. In TWPM one may compute the phase-sum and the phase-difference of two close phase measurements. Early TWPM optically computed the phase difference and phase sum by double exposure holography. However soon after, TWPM became almost synonymous to calculating the phase-difference only. The more sensitive phase-sum was largely forgotten. The standard application for phase-difference TWPM is to extend the phase measurement depth without phase-unwrapping for discontinuous phase-objects. This phase-difference, while non-wrapped, decreases however the signal-to-noise ratio (SNR) of the estimated phase. On the other hand, the phase-sum increases the phase sensitivity, and the SNR of the estimated phase. In spite of these two great advantages, the use of the phase-sum in TWPM has been almost ignored. In this paper we review and set the stage for digital TWPM for super-sensitive phase-sum estimation. This is coupled with two-sensitivity phase-unwrapping to obtain extended-range super-sensitive fringe-projection profilometry estimations. Here we mathematically prove, and experimentally show that using the phase-sum one obtains a huge increase in SNR with respect to using the phase-difference alone. The pioneer works on double exposure TWPM holography that uses the phase-difference and phase-sum are also properly acknowledged. Finally, two experimental results from fringe-projection profilometry that clearly show the huge SNR gain of the phase-sum, with respect to the phase-difference is now mathematically well established.

Modeling PSInSAR time series without phase unwrapping

USGS Publications Warehouse

Zhang, L.; Ding, X.; Lu, Z.

2011-01-01

In this paper, we propose a least-squares-based method for multitemporal synthetic aperture radar interferometry that allows one to estimate deformations without the need of phase unwrapping. The method utilizes a series of multimaster wrapped differential interferograms with short baselines and focuses on arcs at which there are no phase ambiguities. An outlier detector is used to identify and remove the arcs with phase ambiguities, and a pseudoinverse of the variance-covariance matrix is used as the weight matrix of the correlated observations. The deformation rates at coherent points are estimated with a least squares model constrained by reference points. The proposed approach is verified with a set of simulated data.

Time series analysis of InSAR data: Methods and trends

NASA Astrophysics Data System (ADS)

Osmanoğlu, Batuhan; Sunar, Filiz; Wdowinski, Shimon; Cabral-Cano, Enrique

2016-05-01

Time series analysis of InSAR data has emerged as an important tool for monitoring and measuring the displacement of the Earth's surface. Changes in the Earth's surface can result from a wide range of phenomena such as earthquakes, volcanoes, landslides, variations in ground water levels, and changes in wetland water levels. Time series analysis is applied to interferometric phase measurements, which wrap around when the observed motion is larger than one-half of the radar wavelength. Thus, the spatio-temporal ;unwrapping; of phase observations is necessary to obtain physically meaningful results. Several different algorithms have been developed for time series analysis of InSAR data to solve for this ambiguity. These algorithms may employ different models for time series analysis, but they all generate a first-order deformation rate, which can be compared to each other. However, there is no single algorithm that can provide optimal results in all cases. Since time series analyses of InSAR data are used in a variety of applications with different characteristics, each algorithm possesses inherently unique strengths and weaknesses. In this review article, following a brief overview of InSAR technology, we discuss several algorithms developed for time series analysis of InSAR data using an example set of results for measuring subsidence rates in Mexico City.

Time Series Analysis of Insar Data: Methods and Trends

NASA Technical Reports Server (NTRS)

Osmanoglu, Batuhan; Sunar, Filiz; Wdowinski, Shimon; Cano-Cabral, Enrique

2015-01-01

Time series analysis of InSAR data has emerged as an important tool for monitoring and measuring the displacement of the Earth's surface. Changes in the Earth's surface can result from a wide range of phenomena such as earthquakes, volcanoes, landslides, variations in ground water levels, and changes in wetland water levels. Time series analysis is applied to interferometric phase measurements, which wrap around when the observed motion is larger than one-half of the radar wavelength. Thus, the spatio-temporal ''unwrapping" of phase observations is necessary to obtain physically meaningful results. Several different algorithms have been developed for time series analysis of InSAR data to solve for this ambiguity. These algorithms may employ different models for time series analysis, but they all generate a first-order deformation rate, which can be compared to each other. However, there is no single algorithm that can provide optimal results in all cases. Since time series analyses of InSAR data are used in a variety of applications with different characteristics, each algorithm possesses inherently unique strengths and weaknesses. In this review article, following a brief overview of InSAR technology, we discuss several algorithms developed for time series analysis of InSAR data using an example set of results for measuring subsidence rates in Mexico City.

Comparison of Interferometric Time-Series Analysis Techniques with Implications for Future Mission Design

NASA Astrophysics Data System (ADS)

Werner, C. L.; Wegmuller, U.; Strozzi, T.; Wiesmann, A.

2006-12-01

Principle contributors to the noise in differential SAR interferograms are temporal phase stability of the surface, geometry relating to baseline and surface slope, and propagation path delay variations due to tropospheric water vapor and the ionosphere. Time series analysis of multiple interferograms generated from a stack of SAR SLC images seeks to determine the deformation history of the surface while reducing errors. Only those scatterers within a resolution element that are stable and coherent for each interferometric pair contribute to the desired deformation signal. Interferograms with baselines exceeding 1/3 the critical baseline have substantial geometrical decorrelation for distributed targets. Short baseline pairs with multiple reference scenes can be combined using least-squares estimation to obtain a global deformation solution. Alternately point-like persistent scatterers can be identified in scenes that do not exhibit geometrical decorrelation associated with large baselines. In this approach interferograms are formed from a stack of SAR complex images using a single reference scene. Stable distributed scatter pixels are excluded however due to the presence of large baselines. We apply both point- based and short-baseline methodologies and compare results for a stack of fine-beam Radarsat data acquired in 2002-2004 over a rapidly subsiding oil field near Lost Hills, CA. We also investigate the density of point-like scatters with respect to image resolution. The primary difficulty encountered when applying time series methods is phase unwrapping errors due to spatial and temporal gaps. Phase unwrapping requires sufficient spatial and temporal sampling. Increasing the SAR range bandwidth increases the range resolution as well as increasing the critical interferometric baseline that defines the required satellite orbital tube diameter. Sufficient spatial sampling also permits unwrapping because of the reduced phase/pixel gradient. Short time intervals further reduce the differential phase due to deformation when the deformation is continuous. Lower frequency systems (L- vs. C-Band) substantially improve the ability to unwrap the phase correctly by directly reducing both interferometric phase amplitude and temporal decorrelation.

Spectral refractive index assessment of turbid samples by combining spatial frequency near-infrared spectroscopy with Kramers-Kronig analysis

NASA Astrophysics Data System (ADS)

Meitav, Omri; Shaul, Oren; Abookasis, David

2018-03-01

A practical algorithm for estimating the wavelength-dependent refractive index (RI) of a turbid sample in the spatial frequency domain with the aid of Kramers-Kronig (KK) relations is presented. In it, phase-shifted sinusoidal patterns (structured illumination) are serially projected at a high spatial frequency onto the sample surface (mouse scalp) at different near-infrared wavelengths while a camera mounted normally to the sample surface captures the reflected diffuse light. In the offline analysis pipeline, recorded images at each wavelength are converted to spatial absorption maps by logarithmic function, and once the absorption coefficient information is obtained, the imaginary part (k) of the complex RI (CRI), based on Maxell's equations, can be calculated. Using the data represented by k, the real part of the CRI (n) is then resolved by KK analysis. The wavelength dependence of n ( λ ) is then fitted separately using four standard dispersion models: Cornu, Cauchy, Conrady, and Sellmeier. In addition, three-dimensional surface-profile distribution of n is provided based on phase profilometry principles and a phase-unwrapping-based phase-derivative-variance algorithm. Experimental results demonstrate the capability of the proposed idea for sample's determination of a biological sample's RI value.

Fast and robust estimation of ophthalmic wavefront aberrations

NASA Astrophysics Data System (ADS)

Dillon, Keith

2016-12-01

Rapidly rising levels of myopia, particularly in the developing world, have led to an increased need for inexpensive and automated approaches to optometry. A simple and robust technique is provided for estimating major ophthalmic aberrations using a gradient-based wavefront sensor. The approach is based on the use of numerical calculations to produce diverse combinations of phase components, followed by Fourier transforms to calculate the coefficients. The approach does not utilize phase unwrapping nor iterative solution of inverse problems. This makes the method very fast and tolerant to image artifacts, which do not need to be detected and masked or interpolated as is needed in other techniques. These features make it a promising algorithm on which to base low-cost devices for applications that may have limited access to expert maintenance and operation.

All-digital GPS receiver mechanization

NASA Astrophysics Data System (ADS)

Ould, P. C.; van Wechel, R. J.

The paper describes the all-digital baseband correlation processing of GPS signals, which is characterized by (1) a potential for improved antijamming performance, (2) fast acquisition by a digital matched filter, (3) reduction of adjustment, (4) increased system reliability, and (5) provision of a basis for the realization of a high degree of VLSI potential for the development of small economical GPS sets. The basic technical approach consists of a broadband fix-tuned RF converter followed by a digitizer; digital-matched-filter acquisition section; phase- and delay-lock tracking via baseband digital correlation; software acquisition logic and loop filter implementation; and all-digital implementation of the feedback numerical controlled oscillators and code generator. Broadband in-phase and quadrature tracking is performed by an arctangent angle detector followed by a phase-unwrapping algorithm that eliminates false locks induced by sampling and data bit transitions, and yields a wide pull-in frequency range approaching one-fourth of the loop iteration frequency.

Fringe pattern information retrieval using wavelets

NASA Astrophysics Data System (ADS)

Sciammarella, Cesar A.; Patimo, Caterina; Manicone, Pasquale D.; Lamberti, Luciano

2005-08-01

Two-dimensional phase modulation is currently the basic model used in the interpretation of fringe patterns that contain displacement information, moire, holographic interferometry, speckle techniques. Another way to look to these two-dimensional signals is to consider them as frequency modulated signals. This alternative interpretation has practical implications similar to those that exist in radio engineering for handling frequency modulated signals. Utilizing this model it is possible to obtain frequency information by using the energy approach introduced by Ville in 1944. A natural complementary tool of this process is the wavelet methodology. The use of wavelet makes it possible to obtain the local values of the frequency in a one or two dimensional domain without the need of previous phase retrieval and differentiation. Furthermore from the properties of wavelets it is also possible to obtain at the same time the phase of the signal with the advantage of a better noise removal capabilities and the possibility of developing simpler algorithms for phase unwrapping due to the availability of the derivative of the phase.

General phase regularized reconstruction using phase cycling.

PubMed

Ong, Frank; Cheng, Joseph Y; Lustig, Michael

2018-07-01

To develop a general phase regularized image reconstruction method, with applications to partial Fourier imaging, water-fat imaging and flow imaging. The problem of enforcing phase constraints in reconstruction was studied under a regularized inverse problem framework. A general phase regularized reconstruction algorithm was proposed to enable various joint reconstruction of partial Fourier imaging, water-fat imaging and flow imaging, along with parallel imaging (PI) and compressed sensing (CS). Since phase regularized reconstruction is inherently non-convex and sensitive to phase wraps in the initial solution, a reconstruction technique, named phase cycling, was proposed to render the overall algorithm invariant to phase wraps. The proposed method was applied to retrospectively under-sampled in vivo datasets and compared with state of the art reconstruction methods. Phase cycling reconstructions showed reduction of artifacts compared to reconstructions without phase cycling and achieved similar performances as state of the art results in partial Fourier, water-fat and divergence-free regularized flow reconstruction. Joint reconstruction of partial Fourier + water-fat imaging + PI + CS, and partial Fourier + divergence-free regularized flow imaging + PI + CS were demonstrated. The proposed phase cycling reconstruction provides an alternative way to perform phase regularized reconstruction, without the need to perform phase unwrapping. It is robust to the choice of initial solutions and encourages the joint reconstruction of phase imaging applications. Magn Reson Med 80:112-125, 2018. © 2017 International Society for Magnetic Resonance in Medicine. © 2017 International Society for Magnetic Resonance in Medicine.

Pixel-by-pixel absolute phase retrieval using three phase-shifted fringe patterns without markers

NASA Astrophysics Data System (ADS)

Jiang, Chufan; Li, Beiwen; Zhang, Song

2017-04-01

This paper presents a method that can recover absolute phase pixel by pixel without embedding markers on three phase-shifted fringe patterns, acquiring additional images, or introducing additional hardware component(s). The proposed three-dimensional (3D) absolute shape measurement technique includes the following major steps: (1) segment the measured object into different regions using rough priori knowledge of surface geometry; (2) artificially create phase maps at different z planes using geometric constraints of structured light system; (3) unwrap the phase pixel by pixel for each region by properly referring to the artificially created phase map; and (4) merge unwrapped phases from all regions into a complete absolute phase map for 3D reconstruction. We demonstrate that conventional three-step phase-shifted fringe patterns can be used to create absolute phase map pixel by pixel even for large depth range objects. We have successfully implemented our proposed computational framework to achieve absolute 3D shape measurement at 40 Hz.

Fringe order correction for the absolute phase recovered by two selected spatial frequency fringe projections in fringe projection profilometry.

PubMed

Ding, Yi; Peng, Kai; Yu, Miao; Lu, Lei; Zhao, Kun

2017-08-01

The performance of the two selected spatial frequency phase unwrapping methods is limited by a phase error bound beyond which errors will occur in the fringe order leading to a significant error in the recovered absolute phase map. In this paper, we propose a method to detect and correct the wrong fringe orders. Two constraints are introduced during the fringe order determination of two selected spatial frequency phase unwrapping methods. A strategy to detect and correct the wrong fringe orders is also described. Compared with the existing methods, we do not need to estimate the threshold associated with absolute phase values to determine the fringe order error, thus making it more reliable and avoiding the procedure of search in detecting and correcting successive fringe order errors. The effectiveness of the proposed method is validated by the experimental results.

Phase unwrapping method for three-dimensional stress analysis by scattered-light photoelasticity with unpolarized light. 2. Experiment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kihara, Toshiki

2007-09-01

A phase unwrapping method that employs scattered-light photoelasticity with unpolarized light was proposed for automated three-dimensional stress analysis [Appl. Opt. 45, 8848 (2006)]. I now demonstrate the validity of this method by performing nondestructive measurements at three different wavelengths of the secondary principal stress direction {psi}j and the total relative phase retardation {rho}jtot in the plane that contains the rotated principal stress directions in a spherical frozen stress model and compare the results obtained with mechanically sliced models. The parameters {psi}j and {rho}jtot were measured nondestructively over the entire field of view for the first time, to the best ofmore » my knowledge.« less

Descriptive Linear modeling of steady-state visual evoked response

NASA Technical Reports Server (NTRS)

Levison, W. H.; Junker, A. M.; Kenner, K.

1986-01-01

A study is being conducted to explore use of the steady state visual-evoke electrocortical response as an indicator of cognitive task loading. Application of linear descriptive modeling to steady state Visual Evoked Response (VER) data is summarized. Two aspects of linear modeling are reviewed: (1) unwrapping the phase-shift portion of the frequency response, and (2) parsimonious characterization of task-loading effects in terms of changes in model parameters. Model-based phase unwrapping appears to be most reliable in applications, such as manual control, where theoretical models are available. Linear descriptive modeling of the VER has not yet been shown to provide consistent and readily interpretable results.

Using time-frequency analysis to determine time-resolved detonation velocity with microwave interferometry.

PubMed

Kittell, David E; Mares, Jesus O; Son, Steven F

2015-04-01

Two time-frequency analysis methods based on the short-time Fourier transform (STFT) and continuous wavelet transform (CWT) were used to determine time-resolved detonation velocities with microwave interferometry (MI). The results were directly compared to well-established analysis techniques consisting of a peak-picking routine as well as a phase unwrapping method (i.e., quadrature analysis). The comparison is conducted on experimental data consisting of transient detonation phenomena observed in triaminotrinitrobenzene and ammonium nitrate-urea explosives, representing high and low quality MI signals, respectively. Time-frequency analysis proved much more capable of extracting useful and highly resolved velocity information from low quality signals than the phase unwrapping and peak-picking methods. Additionally, control of the time-frequency methods is mainly constrained to a single parameter which allows for a highly unbiased analysis method to extract velocity information. In contrast, the phase unwrapping technique introduces user based variability while the peak-picking technique does not achieve a highly resolved velocity result. Both STFT and CWT methods are proposed as improved additions to the analysis methods applied to MI detonation experiments, and may be useful in similar applications.

A portable intra-oral scanner based on sinusoidal pattern of fast phase-shifting

NASA Astrophysics Data System (ADS)

Jan, Chia-Ming; Lin, Ying-Chieh

2016-03-01

This paper presented our current research about the intra-oral scanner made by MIRDC. Utilizing the sinusoidal pattern for fast phase-shifting technique to deal with 3D digitalization of human dental surface profile, the development of pseudo-phase shifting digital projection can easily achieve one type of full-field scanning instead of the common technique of the laser line scanning. Based on traditional Moiré method, we adopt projecting fringes and retrieve phase reconstruction to forward phase unwrapping. The phase difference between the plane and object can be exactly calculated from the desired fringe images, and the surface profile of object was probably reconstructed by using the phase differences information directly. According to our algorithm of space mapping between projections and capturing orientation exchange of our intra-oral scanning configuration, the system we made certainly can be proved to achieve the required accuracy of +/-10μm to deal with intra-oral scanning on the basis of utilizing active triangulation method. The final purpose aimed to the scanning of object surface profile with its size about 10x10x10mm3.

Dual-wavelength digital holographic imaging with phase background subtraction

NASA Astrophysics Data System (ADS)

Khmaladze, Alexander; Matz, Rebecca L.; Jasensky, Joshua; Seeley, Emily; Holl, Mark M. Banaszak; Chen, Zhan

2012-05-01

Three-dimensional digital holographic microscopic phase imaging of objects that are thicker than the wavelength of the imaging light is ambiguous and results in phase wrapping. In recent years, several unwrapping methods that employed two or more wavelengths were introduced. These methods compare the phase information obtained from each of the wavelengths and extend the range of unambiguous height measurements. A straightforward dual-wavelength phase imaging method is presented which allows for a flexible tradeoff between the maximum height of the sample and the amount of noise the method can tolerate. For highly accurate phase measurements, phase unwrapping of objects with heights higher than the beat (synthetic) wavelength (i.e. the product of the original two wavelengths divided by their difference), can be achieved. Consequently, three-dimensional measurements of a wide variety of biological systems and microstructures become technically feasible. Additionally, an effective method of removing phase background curvature based on slowly varying polynomial fitting is proposed. This method allows accurate volume measurements of several small objects with the same image frame.

Quantitative holographic interferometry applied to combustion and compressible flow research

NASA Astrophysics Data System (ADS)

Bryanston-Cross, Peter J.; Towers, D. P.

1993-03-01

The application of holographic interferometry to phase object analysis is described. Emphasis has been given to a method of extracting quantitative information automatically from the interferometric fringe data. To achieve this a carrier frequency has been added to the holographic data. This has made it possible, firstly to form a phase map using a fast Fourier transform (FFT) algorithm. Then to `solve,' or unwrap, this image to give a contiguous density map using a minimum weight spanning tree (MST) noise immune algorithm, known as fringe analysis (FRAN). Applications of this work to a burner flame and a compressible flow are presented. In both cases the spatial frequency of the fringes exceed the resolvable limit of conventional digital framestores. Therefore, a flatbed scanner with a resolution of 3200 X 2400 pixels has been used to produce very high resolution digital images from photographs. This approach has allowed the processing of data despite the presence of caustics, generated by strong thermal gradients at the edge of the combustion field. A similar example is presented from the analysis of a compressible transonic flow in the shock wave and trailing edge regions.

Deformation Time-Series of the Lost-Hills Oil Field using a Multi-Baseline Interferometric SAR Inversion Algorithm with Finite Difference Smoothing Constraints

NASA Astrophysics Data System (ADS)

Werner, C. L.; Wegmüller, U.; Strozzi, T.

2012-12-01

The Lost-Hills oil field located in Kern County,California ranks sixth in total remaining reserves in California. Hundreds of densely packed wells characterize the field with one well every 5000 to 20000 square meters. Subsidence due to oil extraction can be grater than 10 cm/year and is highly variable both in space and time. The RADARSAT-1 SAR satellite collected data over this area with a 24-day repeat during a 2 year period spanning 2002-2004. Relatively high interferometric correlation makes this an excellent region for development and test of deformation time-series inversion algorithms. Errors in deformation time series derived from a stack of differential interferograms are primarily due to errors in the digital terrain model, interferometric baselines, variability in tropospheric delay, thermal noise and phase unwrapping errors. Particularly challenging is separation of non-linear deformation from variations in troposphere delay and phase unwrapping errors. In our algorithm a subset of interferometric pairs is selected from a set of N radar acquisitions based on criteria of connectivity, time interval, and perpendicular baseline. When possible, the subset consists of temporally connected interferograms, otherwise the different groups of interferograms are selected to overlap in time. The maximum time interval is constrained to be less than a threshold value to minimize phase gradients due to deformation as well as minimize temporal decorrelation. Large baselines are also avoided to minimize the consequence of DEM errors on the interferometric phase. Based on an extension of the SVD based inversion described by Lee et al. ( USGS Professional Paper 1769), Schmidt and Burgmann (JGR, 2003), and the earlier work of Berardino (TGRS, 2002), our algorithm combines estimation of the DEM height error with a set of finite difference smoothing constraints. A set of linear equations are formulated for each spatial point that are functions of the deformation velocities during the time intervals spanned by the interferogram and a DEM height correction. The sensitivity of the phase to the height correction depends on the length of the perpendicular baseline of each interferogram. This design matrix is augmented with a set of additional weighted constraints on the acceleration that penalize rapid velocity variations. The weighting factor γ can be varied from 0 (no smoothing) to a large values (> 10) that yield an essentially linear time-series solution. The factor can be tuned to take into account a priori knowledge of the deformation non-linearity. The difference between the time-series solution and the unconstrained time-series can be interpreted as due to a combination of tropospheric path delay and baseline error. Spatial smoothing of the residual phase leads to an improved atmospheric model that can be fed back into the model and iterated. Our analysis shows non-linear deformation related to changes in the oil extraction as well as local height corrections improving on the low resolution 3 arc-sec SRTM DEM.

Optimized two-frequency phase-measuring-profilometry light-sensor temporal-noise sensitivity.

PubMed

Li, Jielin; Hassebrook, Laurence G; Guan, Chun

2003-01-01

Temporal frame-to-frame noise in multipattern structured light projection can significantly corrupt depth measurement repeatability. We present a rigorous stochastic analysis of phase-measuring-profilometry temporal noise as a function of the pattern parameters and the reconstruction coefficients. The analysis is used to optimize the two-frequency phase measurement technique. In phase-measuring profilometry, a sequence of phase-shifted sine-wave patterns is projected onto a surface. In two-frequency phase measurement, two sets of pattern sequences are used. The first, low-frequency set establishes a nonambiguous depth estimate, and the second, high-frequency set is unwrapped, based on the low-frequency estimate, to obtain an accurate depth estimate. If the second frequency is too low, then depth error is caused directly by temporal noise in the phase measurement. If the second frequency is too high, temporal noise triggers ambiguous unwrapping, resulting in depth measurement error. We present a solution for finding the second frequency, where intensity noise variance is at its minimum.

ARIA: Delivering state-of-the-art InSAR products to end users

NASA Astrophysics Data System (ADS)

Agram, P. S.; Owen, S. E.; Hua, H.; Manipon, G.; Sacco, G. F.; Bue, B. D.; Fielding, E. J.; Yun, S. H.; Simons, M.; Webb, F.; Rosen, P. A.; Lundgren, P.; Liu, Z.

2016-12-01

Advanced Rapid Imaging and Analysis (ARIA) Center for Natural Hazards aims to bring state-of-the-art geodetic imaging capabilities to an operational level in support of local, national, and international hazard response communities. ARIA project's first foray into operational generation of InSAR products was with Calimap Project, in collaboration with ASI-CIDOT, using X-band data from the Cosmo-SkyMed constellation. Over the last year, ARIA's processing infrastructure has been significantly upgraded to exploit the free stream of high quality C-band SAR data from ESA's Sentinel-1 mission and related algorithmic improvements to the ISCE software. ARIA's data system can now operationally generate geocoded unwrapped phase and coherence products in GIS-friendly formats from Sentinel-1 TOPS mode data in an automated fashion, and this capability is currently being exercised various study sites across the United States including Hawaii, Central California, Iceland and South America. The ARIA team, building on the experience gained from handling X-band data and C-band data, has also built an automated machine learning-based classifier to label the auto-generated interferograms based on phase unwrapping quality. These high quality "time-series ready" InSAR products generated using state-of-the-art processing algorithms can be accessed by end users using two different mechanisms - 1) a Faceted-search interface that includes browse imagery for quick visualization and 2) an ElasticSearch-based API to enable bulk automated download, post-processing and time-series analysis. In this talk, we will present InSAR results from various global events that ARIA system has responded to. We will also discuss the set of geospatial big data tools including GIS libraries and API tools, that end users will need to familiarize themselves with in order to maximize the utilization of continuous stream of InSAR products from the Sentinel-1 and NISAR missions that the ARIA project will generate.

Improved adjoin-list for quality-guided phase unwrapping based on red-black trees

NASA Astrophysics Data System (ADS)

Cruz-Santos, William; López-García, Lourdes; Rueda-Paz, Juvenal; Redondo-Galvan, Arturo

2016-08-01

The quality-guide phase unwrapping is an important technique that is based on quality maps which guide the unwrapping process. The efficiency of this technique depends in the adjoin-list data structure implementation. There exists several proposals that improve the adjoin-list; Ming Zhao et. al. proposed an Indexed Interwoven Linked List (I2L2) that is based on dividing the quality values into intervals of equal size and inserting in a linked list those pixels with quality values within a certain interval. Ming Zhao and Qian Kemao proposed an improved I2L2 replacing each linked list in each interval by a heap data structure, which allows efficient procedures for insertion and deletion. In this paper, we propose an improved I2L2 which uses Red-Black trees (RBT) data structures for each interval. Our proposal has as main goal to avoid the unbalanced properties of the head and thus, reducing the time complexity of insertion. In order to maintain the same efficiency of the heap when deleting an element, we provide an efficient way to remove the pixel with the highest quality value in the RBT using a pointer to the rightmost element in the tree. We also provide a new partition strategy of the phase values that is based on a density criterion. Experimental results applied to phase shifting profilometry are shown for large images.

Two-dimensional wavelet transform for reliability-guided phase unwrapping in optical fringe pattern analysis.

PubMed

Li, Sikun; Wang, Xiangzhao; Su, Xianyu; Tang, Feng

2012-04-20

This paper theoretically discusses modulus of two-dimensional (2D) wavelet transform (WT) coefficients, calculated by using two frequently used 2D daughter wavelet definitions, in an optical fringe pattern analysis. The discussion shows that neither is good enough to represent the reliability of the phase data. The differences between the two frequently used 2D daughter wavelet definitions in the performance of 2D WT also are discussed. We propose a new 2D daughter wavelet definition for reliability-guided phase unwrapping of optical fringe pattern. The modulus of the advanced 2D WT coefficients, obtained by using a daughter wavelet under this new daughter wavelet definition, includes not only modulation information but also local frequency information of the deformed fringe pattern. Therefore, it can be treated as a good parameter that represents the reliability of the retrieved phase data. Computer simulation and experimentation show the validity of the proposed method.

Phase-locked-loop interferometry applied to aspheric testing with a computer-stored compensator.

PubMed

Servin, M; Malacara, D; Rodriguez-Vera, R

1994-05-01

A recently developed technique for continuous-phase determination of interferograms with a digital phase-locked loop (PLL) is applied to the null testing of aspheres. Although this PLL demodulating scheme is also a synchronous or direct interferometric technique, the separate unwrapping process is not explicitly required. The unwrapping and the phase-detection processes are achieved simultaneously within the PLL. The proposed method uses a computer-generated holographic compensator. The holographic compensator does not need to be printed out by any means; it is calculated and used from the computer. This computer-stored compensator is used as the reference signal to phase demodulate a sample interferogram obtained from the asphere being tested. Consequently the demodulated phase contains information about the wave-front departures from the ideal computer-stored aspheric interferogram. Wave-front differences of ~ 1 λ are handled easily by the proposed PLL scheme. The maximum recorded frequency in the template's interferogram as well as in the sampled interferogram are assumed to be below the Nyquist frequency.

Microscopic 3D measurement of dynamic scene using optimized pulse-width-modulation binary fringe

NASA Astrophysics Data System (ADS)

Hu, Yan; Chen, Qian; Feng, Shijie; Tao, Tianyang; Li, Hui; Zuo, Chao

2017-10-01

Microscopic 3-D shape measurement can supply accurate metrology of the delicacy and complexity of MEMS components of the final devices to ensure their proper performance. Fringe projection profilometry (FPP) has the advantages of noncontactness and high accuracy, making it widely used in 3-D measurement. Recently, tremendous advance of electronics development promotes 3-D measurements to be more accurate and faster. However, research about real-time microscopic 3-D measurement is still rarely reported. In this work, we effectively combine optimized binary structured pattern with number-theoretical phase unwrapping algorithm to realize real-time 3-D shape measurement. A slight defocusing of our proposed binary patterns can considerably alleviate the measurement error based on phase-shifting FPP, making the binary patterns have the comparable performance with ideal sinusoidal patterns. Real-time 3-D measurement about 120 frames per second (FPS) is achieved, and experimental result of a vibrating earphone is presented.

Network Adjustment of Orbit Errors in SAR Interferometry

NASA Astrophysics Data System (ADS)

Bahr, Hermann; Hanssen, Ramon

2010-03-01

Orbit errors can induce significant long wavelength error signals in synthetic aperture radar (SAR) interferograms and thus bias estimates of wide-scale deformation phenomena. The presented approach aims for correcting orbit errors in a preprocessing step to deformation analysis by modifying state vectors. Whereas absolute errors in the orbital trajectory are negligible, the influence of relative errors (baseline errors) is parametrised by their parallel and perpendicular component as a linear function of time. As the sensitivity of the interferometric phase is only significant with respect to the perpendicular base-line and the rate of change of the parallel baseline, the algorithm focuses on estimating updates to these two parameters. This is achieved by a least squares approach, where the unwrapped residual interferometric phase is observed and atmospheric contributions are considered to be stochastic with constant mean. To enhance reliability, baseline errors are adjusted in an overdetermined network of interferograms, yielding individual orbit corrections per acquisition.

Enhancement of panoramic image resolution based on swift interpolation of Bezier surface

NASA Astrophysics Data System (ADS)

Xiao, Xiao; Yang, Guo-guang; Bai, Jian

2007-01-01

Panoramic annular lens project the view of the entire 360 degrees around the optical axis onto an annular plane based on the way of flat cylinder perspective. Due to the infinite depth of field and the linear mapping relationship between an object and an image, the panoramic imaging system plays important roles in the applications of robot vision, surveillance and virtual reality. An annular image needs to be unwrapped to conventional rectangular image without distortion, in which interpolation algorithm is necessary. Although cubic splines interpolation can enhance the resolution of unwrapped image, it occupies too much time to be applied in practices. This paper adopts interpolation method based on Bezier surface and proposes a swift interpolation algorithm for panoramic image, considering the characteristic of panoramic image. The result indicates that the resolution of the image is well enhanced compared with the image by cubic splines and bilinear interpolation. Meanwhile the time consumed is shortened up by 78% than the time consumed cubic interpolation.

Quantifying phase synchronization using instances of Hilbert phase slips

NASA Astrophysics Data System (ADS)

Govindan, R. B.

2018-07-01

We propose to quantify phase synchronization between two signals, x(t) and y(t), by calculating variance in the Hilbert phase of y(t) at instances of phase slips exhibited by x(t). The proposed approach is tested on numerically simulated coupled chaotic Roessler systems and second order autoregressive processes. Furthermore we compare the performance of the proposed and original approaches using uterine electromyogram signals and show that both approaches yield consistent results A standard phase synchronization approach, which involves unwrapping the Hilbert phases (ϕ1(t) and ϕ2(t)) of the two signals and analyzing the variance in the | n ṡϕ1(t) - m ṡϕ2(t) | , mod 2 π, (n and m are integers), was used for comparison. The synchronization indexes obtained from the proposed approach and the standard approach agree reasonably well in all of the systems studied in this work. Our results indicate that the proposed approach, unlike the traditional approach, does not require the non-invertible transformations - unwrapping of the phases and calculation of mod 2 π and it can be used to reliably to quantify phase synchrony between two signals.

Adaptive Unscented Kalman Filter Phase Unwrapping Method and Its Application on Gaofen-3 Interferometric SAR Data.

PubMed

Gao, Yandong; Zhang, Shubi; Li, Tao; Chen, Qianfu; Li, Shijin; Meng, Pengfei

2018-06-02

Phase unwrapping (PU) is a key step in the reconstruction of digital elevation models (DEMs) and the monitoring of surface deformation from interferometric synthetic aperture radar (SAR, InSAR) data. In this paper, an improved PU method that combines an amended matrix pencil model, an adaptive unscented kalman filter (AUKF), an efficient quality-guided strategy based on heapsort, and a circular median filter is proposed. PU theory and the existing UKFPU method are covered. Then, the improved method is presented with emphasis on the AUKF and the circular median filter. AUKF has been well used in other fields, but it is for the first time applied to interferometric images PU, to the best of our knowledge. First, the amended matrix pencil model is used to estimate the phase gradient. Then, an AUKF model is used to unwrap the interferometric phase based on an efficient quality-guided strategy based on heapsort. Finally, the key results are obtained by filtering the results using a circular median. The proposed method is compared with the minimum cost network flow (MCF), statistical cost network flow (SNAPHU), regularized phase tracking technique (RPTPU), and UKFPU methods using two sets of simulated data and two sets of experimental GF-3 SAR data. The improved method is shown to yield the greatest accuracy in the interferometric phase maps compared to the methods considered in this paper. Furthermore, the improved method is shown to be the most robust to noise and is thus most suitable for PU of GF-3 SAR data in high-noise and low-coherence regions.

Measurement of the surface morphology of plasma facing components on the EAST tokamak by a laser speckle interferometry approach

NASA Astrophysics Data System (ADS)

Hongbei, WANG; Xiaoqian, CUI; Yuanbo, LI; Mengge, ZHAO; Shuhua, LI; Guangnan, LUO; Hongbin, DING

2018-03-01

The laser speckle interferometry approach provides the possibility of an in situ optical non-contacted measurement for the surface morphology of plasma facing components (PFCs), and the reconstruction image of the PFC surface morphology is computed by a numerical model based on a phase unwrapping algorithm. A remote speckle interferometry measurement at a distance of three meters for real divertor tiles retired from EAST was carried out in the laboratory to simulate a real detection condition on EAST. The preliminary surface morphology of the divertor tiles was well reproduced by the reconstructed geometric image. The feasibility and reliability of this approach for the real-time measurement of PFCs have been demonstrated.

One-shot profile inspection for surfaces with depth, color and reflectivity discontinuities.

PubMed

Su, Wei-Hung; Chen, Sih-Yue

2017-05-01

A one-shot technique for surfaces with depth, color, and reflectivity discontinuities is presented. It uses windowed Fourier transform to extract the fringe phases and a binary-encoded scheme to unwrap the phases. Experiments show that absolute phases could be obtained with high reliability.

Shape measurement of objects with large discontinuities and surface isolations using complementary grating projection

NASA Astrophysics Data System (ADS)

Hao, Yudong; Zhao, Yang; Li, Dacheng

1999-11-01

Grating projection 3D profilometry has three major problems that have to be handled with great care. They are local shadows, phase discontinuities and surface isolations. Carrying no information, shadow areas give us no clue about the profile there. Phase discontinuities often baffle phase unwrappers because they may be generated for several reasons difficult to distinguish. Spatial phase unwrapping will inevitably fail if the object under teste have surface isolations. In this paper, a complementary grating projection profilometry is reported, which attempts to tackle the three aforementioned problems simultaneously. This technique involves projecting two grating patterns form both sides of the CCD camera. Phase unwrapping is carried out pixel by pixel using the two phase maps based on the excess fraction method, which is immune to phase discontinuities or surface isolations. Complementary projection makes sure that no area in the visible volume of CCD is devoid of fringe information, although in some cases a small area of the reconstructed profile is of low accuracy compared with others. The system calibration procedures and measurement results are presented in detail, and possible improvement is discussed.

Application of the windowed-Fourier-transform-based fringe analysis technique for investigating temperature and concentration fields in fluids.

PubMed

Mohanan, Sharika; Srivastava, Atul

2014-04-10

The present work is concerned with the development and application of a novel fringe analysis technique based on the principles of the windowed-Fourier-transform (WFT) for the determination of temperature and concentration fields from interferometric images for a range of heat and mass transfer applications. Based on the extent of the noise level associated with the experimental data, the technique has been coupled with two different phase unwrapping methods: the Itoh algorithm and the quality guided phase unwrapping technique for phase extraction. In order to generate the experimental data, a range of experiments have been carried out which include cooling of a vertical flat plate in free convection conditions, combustion of mono-propellant flames, and growth of organic as well as inorganic crystals from their aqueous solutions. The flat plate and combustion experiments are modeled as heat transfer applications wherein the interest is to determine the whole-field temperature distribution. Aqueous-solution-based crystal growth experiments are performed to simulate the mass transfer phenomena and the interest is to determine the two-dimensional solute concentration field around the growing crystal. A Mach-Zehnder interferometer has been employed to record the path-integrated quantity of interest (temperature and/or concentration) in the form of interferometric images in the experiments. The potential of the WFT method has also been demonstrated on numerically simulated phase data for varying noise levels, and the accuracy in phase extraction have been quantified in terms of the root mean square errors. Three levels of noise, i.e., 0%, 10%, and 20% have been considered. Results of the present study show that the WFT technique allows an accurate extraction of phase values that can subsequently be converted into two-dimensional temperature and/or concentration distribution fields. Moreover, since WFT is a local processing technique, speckle patterns and the inherent noise in the interferometric data do not affect the resultant phase values. Brief comparisons of the accuracy of the WFT with other standard techniques such as conventional Fourier-filtering methods are also presented.

Exploring the origins of echo-time-dependent quantitative susceptibility mapping (QSM) measurements in healthy tissue and cerebral microbleeds.

PubMed

Cronin, Matthew J; Wang, Nian; Decker, Kyle S; Wei, Hongjiang; Zhu, Wen-Zhen; Liu, Chunlei

2017-04-01

Quantitative susceptibility mapping (QSM) is increasingly used to measure variation in tissue composition both in the brain and in other areas of the body in a range of disease pathologies. Although QSM measurements were originally believed to be independent of the echo time (TE) used in the gradient-recalled echo (GRE) acquisition from which they are derived; recent literature (Sood et al., 2016) has shown that these measurements can be highly TE-dependent in a number of brain regions. In this work we systematically investigate possible causes of this effect through analysis of apparent frequency and QSM measurements derived from data acquired at multiple TEs in vivo in healthy brain regions and in cerebral microbleeds (CMBs); QSM data acquired in a gadolinium-doped phantom; and in QSM data derived from idealized simulated phase data. Apparent frequency measurements in the optic radiations (OR) and central corpus callosum (CC) were compared to those predicted by a 3-pool white matter model, however the model failed to fully explain contrasting frequency profiles measured in the OR and CC. Our results show that TE-dependent QSM measurements can be caused by a failure of phase unwrapping algorithms in and around strong susceptibility sources such as CMBs; however, in healthy brain regions this behavior appears to result from intrinsic non-linear phase evolution in the MR signal. From these results we conclude that care must be taken when deriving frequency and QSM measurements in strong susceptibility sources due to the inherent limitations in phase unwrapping; and that while signal compartmentalization due to tissue microstructure and content is a plausible cause of TE-dependent frequency and QSM measurements in healthy brain regions, better sampling of the MR signal and more complex models of tissue are needed to fully exploit this relationship. Copyright © 2017 Elsevier Inc. All rights reserved.

Free energy profiles for unwrapping the outer superhelical turn of nucleosomal DNA

PubMed Central

Sakuraba, Shun; Ishida, Hisashi

2018-01-01

The eukaryotic genome is packaged into a nucleus in the form of chromatin. The fundamental structural unit of chromatin is a protein-DNA complex, the nucleosome, where 146 or 147 base pairs of DNA wrap 1.75 times around a histone core. To function in cellular processes, however, nucleosomal DNA must be unwrapped. Although this unwrapping has been experimentally investigated, details of the process at an atomic level are not yet well understood. Here, we used molecular dynamics simulation with an enhanced sampling method to calculate the free energy profiles for unwrapping the outer superhelical turn of nucleosomal DNA. A free energy change of about 11.5 kcal/mol for the unwrapping agrees well with values obtained in single molecule experiments. This simulation revealed a variety of conformational states, indicating there are many potential paths to outer superhelicdal turn unwrapping, but the dominant path is likely asymmetric. At one end of the DNA, the first five bps unwrap, after which a second five bps unwrap at the same end with no increase in free energy. The unwrapping then starts at the other end of the DNA, where 10 bps are unwrapped. During further unwrapping of 15 bps, the unwrapping advances at one of the ends, after which the other end of the DNA unwraps to complete the unwrapping of the outer superhelical turn. These results provide insight into the construction, disruption, and repositioning of nucleosomes, which are continuously ongoing during cellular processes. PMID:29505570

Denoising by coupled partial differential equations and extracting phase by backpropagation neural networks for electronic speckle pattern interferometry.

PubMed

Tang, Chen; Lu, Wenjing; Chen, Song; Zhang, Zhen; Li, Botao; Wang, Wenping; Han, Lin

2007-10-20

We extend and refine previous work [Appl. Opt. 46, 2907 (2007)]. Combining the coupled nonlinear partial differential equations (PDEs) denoising model with the ordinary differential equations enhancement method, we propose the new denoising and enhancing model for electronic speckle pattern interferometry (ESPI) fringe patterns. Meanwhile, we propose the backpropagation neural networks (BPNN) method to obtain unwrapped phase values based on a skeleton map instead of traditional interpolations. We test the introduced methods on the computer-simulated speckle ESPI fringe patterns and experimentally obtained fringe pattern, respectively. The experimental results show that the coupled nonlinear PDEs denoising model is capable of effectively removing noise, and the unwrapped phase values obtained by the BPNN method are much more accurate than those obtained by the well-known traditional interpolation. In addition, the accuracy of the BPNN method is adjustable by changing the parameters of networks such as the number of neurons.

Robust autofocus algorithm for ISAR imaging of moving targets

NASA Astrophysics Data System (ADS)

Li, Jian; Wu, Renbiao; Chen, Victor C.

2000-08-01

A robust autofocus approach, referred to as AUTOCLEAN (AUTOfocus via CLEAN), is proposed for the motion compensation in ISAR (inverse synthetic aperture radar) imaging of moving targets. It is a parametric algorithm based on a very flexible data model which takes into account arbitrary range migration and arbitrary phase errors across the synthetic aperture that may be induced by unwanted radial motion of the target as well as propagation or system instability. AUTOCLEAN can be classified as a multiple scatterer algorithm (MSA), but it differs considerably from other existing MSAs in several aspects: (1) dominant scatterers are selected automatically in the two-dimensional (2-D) image domain; (2) scatterers may not be well-isolated or very dominant; (3) phase and RCS (radar cross section) information from each selected scatterer are combined in an optimal way; (4) the troublesome phase unwrapping step is avoided. AUTOCLEAN is computationally efficient and involves only a sequence of FFTs (fast Fourier Transforms). Another good feature associated with AUTOCLEAN is that its performance can be progressively improved by assuming a larger number of dominant scatterers for the target. Hence it can be easily configured for real-time applications including, for example, ATR (automatic target recognition) of non-cooperative moving targets, and for some other applications where the image quality is of the major concern but not the computational time including, for example, for the development and maintenance of low observable aircrafts. Numerical and experimental results have shown that AUTOCLEAN is a very robust autofocus tool for ISAR imaging.

Photogrammetric fingerprint unwrapping

NASA Astrophysics Data System (ADS)

Paar, Gerhard; del Pilar Caballo Perucha, Maria; Bauer, Arnold; Nauschnegg, Bernhard

2008-04-01

Fingerprints are important biometric cues. Compared to conventional fingerprint sensors the use of contact-free stereoscopic image acquisition of the front-most finger segment has a set of advantages: Finger deformation is avoided, the entire relevant area for biometric use is covered, some technical aspects like sensor maintenance and cleaning are facilitated, and access to a three-dimensional reconstruction of the covered area is possible. We describe a photogrammetric workflow for nail-to-nail fingerprint reconstruction: A calibrated sensor setup with typically 5 cameras and dedicated illumination acquires adjacent stereo pairs. Using the silhouettes of the segmented finger a raw cylindrical model is generated. After preprocessing (shading correction, dust removal, lens distortion correction), each individual camera texture is projected onto the model. Image-to-image matching on these pseudo ortho images and dense 3D reconstruction obtains a textured cylindrical digital surface model with radial distances around the major axis and a grid size in the range of 25-50 µm. The model allows for objective fingerprint unwrapping and novel fingerprint matching algorithms since 3D relations between fingerprint features are available as additional cues. Moreover, covering the entire region with relevant fingerprint texture is particularly important for establishing a comprehensive forensic database. The workflow has been implemented in portable C and is ready for industrial exploitation. Further improvement issues are code optimization, unwrapping method, illumination strategy to avoid highlights and to improve the initial segmentation, and the comparison of the unwrapping result to conventional fingerprint acquisition technology.

Visual investigation on the heat dissipation process of a heat sink by using digital holographic interferometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wu, Bingjing; Zhao, Jianlin, E-mail: jlzhao@nwpu.edu.cn; Wang, Jun

2013-11-21

We present a method for visually and quantitatively investigating the heat dissipation process of plate-fin heat sinks by using digital holographic interferometry. A series of phase change maps reflecting the temperature distribution and variation trend of the air field surrounding heat sink during the heat dissipation process are numerically reconstructed based on double-exposure holographic interferometry. According to the phase unwrapping algorithm and the derived relationship between temperature and phase change of the detection beam, the full-field temperature distributions are quantitatively obtained with a reasonably high measurement accuracy. And then the impact of heat sink's channel width on the heat dissipationmore » performance in the case of natural convection is analyzed. In addition, a comparison between simulation and experiment results is given to verify the reliability of this method. The experiment results certify the feasibility and validity of the presented method in full-field, dynamical, and quantitative measurement of the air field temperature distribution, which provides a basis for analyzing the heat dissipation performance of plate-fin heat sinks.« less

Portable low-coherence interferometry for quantitatively imaging fast dynamics with extended field of view

NASA Astrophysics Data System (ADS)

Shaked, Natan T.; Girshovitz, Pinhas; Frenklach, Irena

2014-06-01

We present our recent advances in the development of compact, highly portable and inexpensive wide-field interferometric modules. By a smart design of the interferometric system, including the usage of low-coherence illumination sources and common-path off-axis geometry of the interferometers, spatial and temporal noise levels of the resulting quantitative thickness profile can be sub-nanometric, while processing the phase profile in real time. In addition, due to novel experimentally-implemented multiplexing methods, we can capture low-coherence off-axis interferograms with significantly extended field of view and in faster acquisition rates. Using these techniques, we quantitatively imaged rapid dynamics of live biological cells including sperm cells and unicellular microorganisms. Then, we demonstrated dynamic profiling during lithography processes of microscopic elements, with thicknesses that may vary from several nanometers to hundreds of microns. Finally, we present new algorithms for fast reconstruction (including digital phase unwrapping) of off-axis interferograms, which allow real-time processing in more than video rate on regular single-core computers.

Multiple Acquisition InSAR Analysis: Persistent Scatterer and Small Baseline Approaches

NASA Astrophysics Data System (ADS)

Hooper, A.

2006-12-01

InSAR techniques that process data from multiple acquisitions enable us to form time series of deformation and also allow us to reduce error terms present in single interferograms. There are currently two broad categories of methods that deal with multiple images: persistent scatterer methods and small baseline methods. The persistent scatterer approach relies on identifying pixels whose scattering properties vary little with time and look angle. Pixels that are dominated by a singular scatterer best meet these criteria; therefore, images are processed at full resolution to both increase the chance of there being only one dominant scatterer present, and to reduce the contribution from other scatterers within each pixel. In images where most pixels contain multiple scatterers of similar strength, even at the highest possible resolution, the persistent scatterer approach is less optimal, as the scattering characteristics of these pixels vary substantially with look angle. In this case, an approach that interferes only pairs of images for which the difference in look angle is small makes better sense, and resolution can be sacrificed to reduce the effects of the look angle difference by band-pass filtering. This is the small baseline approach. Existing small baseline methods depend on forming a series of multilooked interferograms and unwrapping each one individually. This approach fails to take advantage of two of the benefits of processing multiple acquisitions, however, which are usually embodied in persistent scatterer methods: the ability to find and extract the phase for single-look pixels with good signal-to-noise ratio that are surrounded by noisy pixels, and the ability to unwrap more robustly in three dimensions, the third dimension being that of time. We have developed, therefore, a new small baseline method to select individual single-look pixels that behave coherently in time, so that isolated stable pixels may be found. After correction for various error terms, the phase values of the selected pixels are unwrapped using a new three-dimensional algorithm. We apply our small baseline method to an area in southern Iceland that includes Katla and Eyjafjallajökull volcanoes, and retrieve a time series of deformation that shows transient deformation due to intrusion of magma beneath Eyjafjallajökull. We also process the data using the Stanford method for persistent scatterers (StaMPS) for comparison.

Shape based segmentation of MRIs of the bones in the knee using phase and intensity information

NASA Astrophysics Data System (ADS)

Fripp, Jurgen; Bourgeat, Pierrick; Crozier, Stuart; Ourselin, Sébastien

2007-03-01

The segmentation of the bones from MR images is useful for performing subsequent segmentation and quantitative measurements of cartilage tissue. In this paper, we present a shape based segmentation scheme for the bones that uses texture features derived from the phase and intensity information in the complex MR image. The phase can provide additional information about the tissue interfaces, but due to the phase unwrapping problem, this information is usually discarded. By using a Gabor filter bank on the complex MR image, texture features (including phase) can be extracted without requiring phase unwrapping. These texture features are then analyzed using a support vector machine classifier to obtain probability tissue matches. The segmentation of the bone is fully automatic and performed using a 3D active shape model based approach driven using gradient and texture information. The 3D active shape model is automatically initialized using a robust affine registration. The approach is validated using a database of 18 FLASH MR images that are manually segmented, with an average segmentation overlap (Dice similarity coefficient) of 0.92 compared to 0.9 obtained using the classifier only.

A New Approach to Estimate Forest Parameters Using Dual-Baseline Pol-InSAR Data

NASA Astrophysics Data System (ADS)

Bai, L.; Hong, W.; Cao, F.; Zhou, Y.

2009-04-01

In POL-InSAR applications using ESPRIT technique, it is assumed that there exist stable scattering centres in the forest. However, the observations in forest severely suffer from volume and temporal decorrelation. The forest scatters are not stable as assumed. The obtained interferometric information is not accurate as expected. Besides, ESPRIT techniques could not identify the interferometric phases corresponding to the ground and the canopy. It provides multiple estimations for the height between two scattering centers due to phase unwrapping. Therefore, estimation errors are introduced to the forest height results. To suppress the two types of errors, we use the dual-baseline POL-InSAR data to estimate forest height. Dual-baseline coherence optimization is applied to obtain interferometric information of stable scattering centers in the forest. From the interferometric phases for different baselines, estimation errors caused by phase unwrapping is solved. Other estimation errors can be suppressed, too. Experiments are done to the ESAR L band POL-InSAR data. Experimental results show the proposed methods provide more accurate forest height than ESPRIT technique.

K-space data processing for magnetic resonance elastography (MRE).

PubMed

Corbin, Nadège; Breton, Elodie; de Mathelin, Michel; Vappou, Jonathan

2017-04-01

Magnetic resonance elastography (MRE) requires substantial data processing based on phase image reconstruction, wave enhancement, and inverse problem solving. The objective of this study is to propose a new, fast MRE method based on MR raw data processing, particularly adapted to applications requiring fast MRE measurement or high elastogram update rate. The proposed method allows measuring tissue elasticity directly from raw data without prior phase image reconstruction and without phase unwrapping. Experimental feasibility is assessed both in a gelatin phantom and in the liver of a porcine model in vivo. Elastograms are reconstructed with the raw MRE method and compared to those obtained using conventional MRE. In a third experiment, changes in elasticity are monitored in real-time in a gelatin phantom during its solidification by using both conventional MRE and raw MRE. The raw MRE method shows promising results by providing similar elasticity values to the ones obtained with conventional MRE methods while decreasing the number of processing steps and circumventing the delicate step of phase unwrapping. Limitations of the proposed method are the influence of the magnitude on the elastogram and the requirement for a minimum number of phase offsets. This study demonstrates the feasibility of directly reconstructing elastograms from raw data.

Can a semi-automated surface matching and principal axis-based algorithm accurately quantify femoral shaft fracture alignment in six degrees of freedom?

PubMed

Crookshank, Meghan C; Beek, Maarten; Singh, Devin; Schemitsch, Emil H; Whyne, Cari M

2013-07-01

Accurate alignment of femoral shaft fractures treated with intramedullary nailing remains a challenge for orthopaedic surgeons. The aim of this study is to develop and validate a cone-beam CT-based, semi-automated algorithm to quantify the malalignment in six degrees of freedom (6DOF) using a surface matching and principal axes-based approach. Complex comminuted diaphyseal fractures were created in nine cadaveric femora and cone-beam CT images were acquired (27 cases total). Scans were cropped and segmented using intensity-based thresholding, producing superior, inferior and comminution volumes. Cylinders were fit to estimate the long axes of the superior and inferior fragments. The angle and distance between the two cylindrical axes were calculated to determine flexion/extension and varus/valgus angulation and medial/lateral and anterior/posterior translations, respectively. Both surfaces were unwrapped about the cylindrical axes. Three methods of matching the unwrapped surface for determination of periaxial rotation were compared based on minimizing the distance between features. The calculated corrections were compared to the input malalignment conditions. All 6DOF were calculated to within current clinical tolerances for all but two cases. This algorithm yielded accurate quantification of malalignment of femoral shaft fractures for fracture gaps up to 60 mm, based on a single CBCT image of the fractured limb. Copyright © 2012 IPEM. Published by Elsevier Ltd. All rights reserved.

Fast Quantitative Susceptibility Mapping with L1-Regularization and Automatic Parameter Selection

PubMed Central

Bilgic, Berkin; Fan, Audrey P.; Polimeni, Jonathan R.; Cauley, Stephen F.; Bianciardi, Marta; Adalsteinsson, Elfar; Wald, Lawrence L.; Setsompop, Kawin

2014-01-01

Purpose To enable fast reconstruction of quantitative susceptibility maps with Total Variation penalty and automatic regularization parameter selection. Methods ℓ1-regularized susceptibility mapping is accelerated by variable-splitting, which allows closed-form evaluation of each iteration of the algorithm by soft thresholding and FFTs. This fast algorithm also renders automatic regularization parameter estimation practical. A weighting mask derived from the magnitude signal can be incorporated to allow edge-aware regularization. Results Compared to the nonlinear Conjugate Gradient (CG) solver, the proposed method offers 20× speed-up in reconstruction time. A complete pipeline including Laplacian phase unwrapping, background phase removal with SHARP filtering and ℓ1-regularized dipole inversion at 0.6 mm isotropic resolution is completed in 1.2 minutes using Matlab on a standard workstation compared to 22 minutes using the Conjugate Gradient solver. This fast reconstruction allows estimation of regularization parameters with the L-curve method in 13 minutes, which would have taken 4 hours with the CG algorithm. Proposed method also permits magnitude-weighted regularization, which prevents smoothing across edges identified on the magnitude signal. This more complicated optimization problem is solved 5× faster than the nonlinear CG approach. Utility of the proposed method is also demonstrated in functional BOLD susceptibility mapping, where processing of the massive time-series dataset would otherwise be prohibitive with the CG solver. Conclusion Online reconstruction of regularized susceptibility maps may become feasible with the proposed dipole inversion. PMID:24259479

Software for Generating Strip Maps from SAR Data

NASA Technical Reports Server (NTRS)

Hensley, Scott; Michel, Thierry; Madsen, Soren; Chapin, Elaine; Rodriguez, Ernesto

2004-01-01

Jurassicprok is a computer program that generates strip-map digital elevation models and other data products from raw data acquired by an airborne synthetic-aperture radar (SAR) system. This software can process data from a variety of airborne SAR systems but is designed especially for the GeoSAR system, which is a dual-frequency (P- and X-band), single-pass interferometric SAR system for measuring elevation both at the bare ground surface and top of the vegetation canopy. Jurassicprok is a modified version of software developed previously for airborne-interferometric- SAR applications. The modifications were made to accommodate P-band interferometric processing, remove approximations that are not generally valid, and reduce processor-induced mapping errors to the centimeter level. Major additions and other improvements over the prior software include the following: a) A new, highly efficient multi-stage-modified wave-domain processing algorithm for accurately motion compensating ultra-wideband data; b) Adaptive regridding algorithms based on estimated noise and actual measured topography to reduce noise while maintaining spatial resolution; c) Exact expressions for height determination from interferogram data; d) Fully calibrated volumetric correlation data based on rigorous removal of geometric and signal-to-noise decorrelation terms; e) Strip range-Doppler image output in user-specified Doppler coordinates; f) An improved phase-unwrapping and absolute-phase-determination algorithm; g) A more flexible user interface with many additional processing options; h) Increased interferogram filtering options; and i) Ability to use disk space instead of random- access memory for some processing steps.

A fast referenceless PRFS-based MR thermometry by phase finite difference

NASA Astrophysics Data System (ADS)

Zou, Chao; Shen, Huan; He, Mengyue; Tie, Changjun; Chung, Yiu-Cho; Liu, Xin

2013-08-01

Proton resonance frequency shift-based MR thermometry is a promising temperature monitoring approach for thermotherapy but its accuracy is vulnerable to inter-scan motion. Model-based referenceless thermometry has been proposed to address this problem but phase unwrapping is usually needed before the model fitting process. In this paper, a referenceless MR thermometry method using phase finite difference that avoids the time consuming phase unwrapping procedure is proposed. Unlike the previously proposed phase gradient technique, the use of finite difference in the new method reduces the fitting error resulting from the ringing artifacts associated with phase discontinuity in the calculation of the phase gradient image. The new method takes into account the values at the perimeter of the region of interest because of their direct relevance to the extrapolated baseline phase of the region of interest (where temperature increase takes place). In simulation study, in vivo and ex vivo experiments, the new method has a root-mean-square temperature error of 0.35 °C, 1.02 °C and 1.73 °C compared to 0.83 °C, 2.81 °C, and 3.76 °C from the phase gradient method, respectively. The method also demonstrated a slightly higher, albeit small, temperature accuracy than the original referenceless MR thermometry method. The proposed method is computationally efficient (∼0.1 s per image), making it very suitable for the real time temperature monitoring.

Analytical estimation of laser phase noise induced BER floor in coherent receiver with digital signal processing.

PubMed

Vanin, Evgeny; Jacobsen, Gunnar

2010-03-01

The Bit-Error-Ratio (BER) floor caused by the laser phase noise in the optical fiber communication system with differential quadrature phase shift keying (DQPSK) and coherent detection followed by digital signal processing (DSP) is analytically evaluated. An in-phase and quadrature (I&Q) receiver with a carrier phase recovery using DSP is considered. The carrier phase recovery is based on a phase estimation of a finite sum (block) of the signal samples raised to the power of four and the phase unwrapping at transitions between blocks. It is demonstrated that errors generated at block transitions cause the dominating contribution to the system BER floor when the impact of the additive noise is negligibly small in comparison with the effect of the laser phase noise. Even the BER floor in the case when the phase unwrapping is omitted is analytically derived and applied to emphasize the crucial importance of this signal processing operation. The analytical results are verified by full Monte Carlo simulations. The BER for another type of DQPSK receiver operation, which is based on differential phase detection, is also obtained in the analytical form using the principle of conditional probability. The principle of conditional probability is justified in the case of differential phase detection due to statistical independency of the laser phase noise induced signal phase error and the additive noise contributions. Based on the achieved analytical results the laser linewidth tolerance is calculated for different system cases.

A comparison of phase imaging and quantitative susceptibility mapping in the imaging of multiple sclerosis lesions at ultrahigh field.

PubMed

Cronin, Matthew John; Wharton, Samuel; Al-Radaideh, Ali; Constantinescu, Cris; Evangelou, Nikos; Bowtell, Richard; Gowland, Penny Anne

2016-06-01

The aim of this study was to compare the use of high-resolution phase and QSM images acquired at ultra-high field in the investigation of multiple sclerosis (MS) lesions with peripheral rings, and to discuss their usefulness for drawing inferences about underlying tissue composition. Thirty-nine Subjects were scanned at 7 T, using 3D T 2*-weighted and T 1-weighted sequences. Phase images were then unwrapped and filtered, and quantitative susceptibility maps were generated using a thresholded k-space division method. Lesions were compared visually and using a 1D profiling algorithm. Lesions displaying peripheral rings in the phase images were identified in 10 of the 39 subjects. Dipolar projections were apparent in the phase images outside of the extent of several of these lesions; however, QSM images showed peripheral rings without such projections. These projections appeared ring-like in a small number of phase images where no ring was observed in QSM. 1D profiles of six well-isolated example lesions showed that QSM contrast corresponds more closely to the magnitude images than phase contrast. Phase images contain dipolar projections, which confounds their use in the investigation of tissue composition in MS lesions. Quantitative susceptibility maps correct these projections, providing insight into the composition of MS lesions showing peripheral rings.

Topographic profiling and refractive-index analysis by use of differential interference contrast with bright-field intensity and atomic force imaging.

PubMed

Axelrod, Noel; Radko, Anna; Lewis, Aaron; Ben-Yosef, Nissim

2004-04-10

A methodology is described for phase restoration of an object function from differential interference contrast (DIC) images. The methodology involves collecting a set of DIC images in the same plane with different bias retardation between the two illuminating light components produced by a Wollaston prism. These images, together with one conventional bright-field image, allows for reduction of the phase deconvolution restoration problem from a highly complex nonlinear mathematical formulation to a set of linear equations that can be applied to resolve the phase for images with a relatively large number of pixels. Additionally, under certain conditions, an on-line atomic force imaging system that does not interfere with the standard DIC illumination modes resolves uncertainties in large topographical variations that generally lead to a basic problem in DIC imaging, i.e., phase unwrapping. Furthermore, the availability of confocal detection allows for a three-dimensional reconstruction with high accuracy of the refractive-index measurement of the object that is to be imaged. This has been applied to reconstruction of the refractive index of an arrayed waveguide in a region in which a defect in the sample is present. The results of this paper highlight the synergism of far-field microscopies integrated with scanned probe microscopies and restoration algorithms for phase reconstruction.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bakhtiari, S.; Liao, S.; Elmer, T.

This paper analyzes heart rate (HR) information from physiological tracings collected with a remote millimeter wave (mmW) I-Q sensor for biometric monitoring applications. A parameter optimization method based on the nonlinear Levenberg-Marquardt algorithm is used. The mmW sensor works at 94 GHz and can detect the vital signs of a human subject from a few to tens of meters away. The reflected mmW signal is typically affected by respiration, body movement, background noise, and electronic system noise. Processing of the mmW radar signal is, thus, necessary to obtain the true HR. The down-converted received signal in this case consists ofmore » both the real part (I-branch) and the imaginary part (Q-branch), which can be considered as the cosine and sine of the received phase of the HR signal. Instead of fitting the converted phase angle signal, the method directly fits the real and imaginary parts of the HR signal, which circumvents the need for phase unwrapping. This is particularly useful when the SNR is low. Also, the method identifies both beat-to-beat HR and individual heartbeat magnitude, which is valuable for some medical diagnosis applications. The mean HR here is compared to that obtained using the discrete Fourier transform.« less

Digital algorithms for parallel pipelined single-detector homodyne fringe counting in laser interferometry

NASA Astrophysics Data System (ADS)

Rerucha, Simon; Sarbort, Martin; Hola, Miroslava; Cizek, Martin; Hucl, Vaclav; Cip, Ondrej; Lazar, Josef

2016-12-01

The homodyne detection with only a single detector represents a promising approach in the interferometric application which enables a significant reduction of the optical system complexity while preserving the fundamental resolution and dynamic range of the single frequency laser interferometers. We present the design, implementation and analysis of algorithmic methods for computational processing of the single-detector interference signal based on parallel pipelined processing suitable for real time implementation on a programmable hardware platform (e.g. the FPGA - Field Programmable Gate Arrays or the SoC - System on Chip). The algorithmic methods incorporate (a) the single detector signal (sine) scaling, filtering, demodulations and mixing necessary for the second (cosine) quadrature signal reconstruction followed by a conic section projection in Cartesian plane as well as (a) the phase unwrapping together with the goniometric and linear transformations needed for the scale linearization and periodic error correction. The digital computing scheme was designed for bandwidths up to tens of megahertz which would allow to measure the displacements at the velocities around half metre per second. The algorithmic methods were tested in real-time operation with a PC-based reference implementation that employed the advantage pipelined processing by balancing the computational load among multiple processor cores. The results indicate that the algorithmic methods are suitable for a wide range of applications [3] and that they are bringing the fringe counting interferometry closer to the industrial applications due to their optical setup simplicity and robustness, computational stability, scalability and also a cost-effectiveness.

Interferometric inverse synthetic aperture radar imaging for space targets based on wideband direct sampling using two antennas

NASA Astrophysics Data System (ADS)

Tian, Biao; Liu, Yang; Xu, Shiyou; Chen, Zengping

2014-01-01

Interferometric inverse synthetic aperture radar (InISAR) imaging provides complementary information to monostatic inverse synthetic aperture radar (ISAR) imaging. This paper proposes a new InISAR imaging system for space targets based on wideband direct sampling using two antennas. The system is easy to realize in engineering since the motion trajectory of space targets can be known in advance, which is simpler than that of three receivers. In the preprocessing step, high speed movement compensation is carried out by designing an adaptive matched filter containing speed that is obtained from the narrow band information. Then, the coherent processing and keystone transform for ISAR imaging are adopted to reserve the phase history of each antenna. Through appropriate collocation of the system, image registration and phase unwrapping can be avoided. Considering the situation not to be satisfied, the influence of baseline variance is analyzed and compensation method is adopted. The corresponding size can be achieved by interferometric processing of the two complex ISAR images. Experimental results prove the validity of the analysis and the three-dimensional imaging algorithm.

Embedded 3D shape measurement system based on a novel spatio-temporal coding method

NASA Astrophysics Data System (ADS)

Xu, Bin; Tian, Jindong; Tian, Yong; Li, Dong

2016-11-01

Structured light measurement has been wildly used since 1970s in industrial component detection, reverse engineering, 3D molding, robot navigation, medical and many other fields. In order to satisfy the demand for high speed, high precision and high resolution 3-D measurement for embedded system, a new patterns combining binary and gray coding principle in space are designed and projected onto the object surface orderly. Each pixel corresponds to the designed sequence of gray values in time - domain, which is treated as a feature vector. The unique gray vector is then dimensionally reduced to a scalar which could be used as characteristic information for binocular matching. In this method, the number of projected structured light patterns is reduced, and the time-consuming phase unwrapping in traditional phase shift methods is avoided. This algorithm is eventually implemented on DM3730 embedded system for 3-D measuring, which consists of an ARM and a DSP core and has a strong capability of digital signal processing. Experimental results demonstrated the feasibility of the proposed method.

Image inversion analysis of the HST OTA (Hubble Space Telescope Optical Telescope Assembly), phase A

NASA Technical Reports Server (NTRS)

Litvak, M. M.

1991-01-01

Technical work during September-December 1990 consisted of: (1) analyzing HST point source images obtained from JPL; (2) retrieving phase information from the images by a direct (noniterative) technique; and (3) characterizing the wavefront aberration due to the errors in the Hubble Space Telescope (HST) mirrors, in a preliminary manner. This work was in support of JPL design of compensating optics for the next generation wide-field planetary camera on HST. This digital technique for phase retrieval from pairs of defocused images, is based on the energy transport equation between these image planes. In addition, an end-to-end wave optics routine, based on the JPL Code 5 prescription of the unaberrated HST and WFPC, was derived for output of the reference phase front when mirror error is absent. Also, the Roddier routine unwrapped the retrieved phase by inserting the required jumps of +/- 2(pi) radians for the sake of smoothness. A least-squares fitting routine, insensitive to phase unwrapping, but nonlinear, was used to obtain estimates of the Zernike polynomial coefficients that describe the aberration. The phase results were close to, but higher than, the expected error in conic constant of the primary mirror suggested by the fossil evidence. The analysis of aberration contributed by the camera itself could be responsible for the small discrepancy, but was not verified by analysis.

Detailed analysis of an optimized FPP-based 3D imaging system

NASA Astrophysics Data System (ADS)

Tran, Dat; Thai, Anh; Duong, Kiet; Nguyen, Thanh; Nehmetallah, Georges

2016-05-01

In this paper, we present detail analysis and a step-by-step implementation of an optimized fringe projection profilometry (FPP) based 3D shape measurement system. First, we propose a multi-frequency and multi-phase shifting sinusoidal fringe pattern reconstruction approach to increase accuracy and sensitivity of the system. Second, phase error compensation caused by the nonlinear transfer function of the projector and camera is performed through polynomial approximation. Third, phase unwrapping is performed using spatial and temporal techniques and the tradeoff between processing speed and high accuracy is discussed in details. Fourth, generalized camera and system calibration are developed for phase to real world coordinate transformation. The calibration coefficients are estimated accurately using a reference plane and several gauge blocks with precisely known heights and by employing a nonlinear least square fitting method. Fifth, a texture will be attached to the height profile by registering a 2D real photo to the 3D height map. The last step is to perform 3D image fusion and registration using an iterative closest point (ICP) algorithm for a full field of view reconstruction. The system is experimentally constructed using compact, portable, and low cost off-the-shelf components. A MATLAB® based GUI is developed to control and synchronize the whole system.

3D measurement using combined Gray code and dual-frequency phase-shifting approach

NASA Astrophysics Data System (ADS)

Yu, Shuang; Zhang, Jing; Yu, Xiaoyang; Sun, Xiaoming; Wu, Haibin; Liu, Xin

2018-04-01

The combined Gray code and phase-shifting approach is a commonly used 3D measurement technique. In this technique, an error that equals integer multiples of the phase-shifted fringe period, i.e. period jump error, often exists in the absolute analog code, which can lead to gross measurement errors. To overcome this problem, the present paper proposes 3D measurement using a combined Gray code and dual-frequency phase-shifting approach. Based on 3D measurement using the combined Gray code and phase-shifting approach, one set of low-frequency phase-shifted fringe patterns with an odd-numbered multiple of the original phase-shifted fringe period is added. Thus, the absolute analog code measured value can be obtained by the combined Gray code and phase-shifting approach, and the low-frequency absolute analog code measured value can also be obtained by adding low-frequency phase-shifted fringe patterns. Then, the corrected absolute analog code measured value can be obtained by correcting the former by the latter, and the period jump errors can be eliminated, resulting in reliable analog code unwrapping. For the proposed approach, we established its measurement model, analyzed its measurement principle, expounded the mechanism of eliminating period jump errors by error analysis, and determined its applicable conditions. Theoretical analysis and experimental results show that the proposed approach can effectively eliminate period jump errors, reliably perform analog code unwrapping, and improve the measurement accuracy.

Moire measuring technology for three-dimensional profile of the object

NASA Astrophysics Data System (ADS)

Fu, Yanjun; Yang, Kuntao

2006-02-01

An optical system is designed to get projection of the transmission grating, the deformed grating is obtained on surface of the object. The image of the deformed grating is given by the lens, the reference grating is put on the place of the image, and then the moire fringe is obtained. The amplify principle of the moire fringe is used to measure the profile of the object. The optical principle of the projection is analyzed. And the relation between the phase and the height of object is deduced. From the different point of geometry optics and the physics opticsl, the optical system is analyzed, the factors that influence the image equality and the measuring result are obtained. So the betterment of improving the measuring precision is brought forward, and in the later information processing, because of the diffuse reflection, the image equality is not very well. In order to get a good image, the digital filter is used to filter the noise and smooth the image firstly. Then in order to improve the measure precision, the subdivision technology is applied. The Fourier transform profilometry and phase shifting technology is used in the calculation. A detail analyses is done both in time field and frequency field. And the method of improving the measuring precision is put forward. A good digital filter algorithm is brought forward in the Fourier transform profilometry. In the phase shifting technology, the detail formula of three-step and four-step is given. At last the phase that is relational with the high information of the object is get, but the phase is disconnected phase, after the unwrapping algorithm,the disconnected phase is changed to be the continuous phase. Taking use of the relation between the phase and height, the height is obtained. Then the three-dimensional profile of the measured object can be reconstructed. The system is very convenient for non-contact measure of profile of some objects.

Performance of the Self Referencing Interferometer in the Presence of Simulated Deep Turbulence and Noise Effects

DTIC Science & Technology

2013-12-01

experimental and simulated cases at Rytov number 0.044...21 Figure 9. Branch point occurrence for experimental and simulated cases at Rytov number 0.044...22 Figure 10. Unwrapped phase data for experimental and simulated cases at Rytov number 0.044

Geodetic Measurements and Mechanical Models of Cyclic Deformation at Okmok Volcano, Alaska

NASA Astrophysics Data System (ADS)

Feigl, K.; Masterlark, T.; Lu, Z.; Ohlendorf, S. J.; Thurber, C. H.; Sigmundsson, F.

2009-12-01

The 1997 and 2008 eruptions of Okmok volcano, Alaska, provide a rare opportunity for conducting a rheological experiment to unravel the complex processes associated with magma migration, storage, and eruption in an active volcano. In this experiment, the magma flux during the eruption provides the “impulse” and the subsequent, transient deformation, the “response”. By simulating the impulse, measuring the response, and interpreting the constitutive relations between the two, one can infer the rheology. Okmok is an excellent natural laboratory for such an experiment because a complete cycle of deformation has been monitored using geodetic and seismic means, including: (a) geodetic time series from Interferometric Synthetic Aperture Radar (InSAR) and the Global Positioning System (GPS), (b) earthquake locations; and (c) seismic tomography. We are developing quantitative models using the Finite Element Method (FEM) to simulate the timing and location of the observed seismicity and deformation by accounting for: (a) the geometry and loading of the magma chamber and lava flow, (b) the spatial distribution of material properties; and (c) the constitutive (rheological) relations between stress and strain. Here, we test the hypothesis that the deformation following the 1997 eruption did not reach a steady state before the eruption in 2008. To do so, we iteratively confront the FEM models with the InSAR measurements using the General Inversion of Phase Technique (GIPhT). This approach models the InSAR phase data directly, without unwrapping, as developed, validated, and applied by Feigl and Thurber [Geophys. J. Int., 2009]. By minimizing a cost function that quantifies the misfit between observed and modeled values in terms of “wrapped” phase (with values ranging from -1/2 to +1/2 cycles), GIPhT can estimate parameters in a geophysical model. By avoiding the pitfalls of phase-unwrapping approaches, GIPhT allows the analysis, interpretation and modeling of more interferometric pairs than approaches that require unwrapping. GIPhT also allows statistical testing of hypotheses because the wrapped phase residuals follow a Von Mises distribution. As a result, the model parameters estimated by GIPhT include formal uncertainties.

Improved quantitative visualization of hypervelocity flow through wavefront estimation based on shadow casting of sinusoidal gratings.

PubMed

Medhi, Biswajit; Hegde, Gopalakrishna M; Gorthi, Sai Siva; Reddy, Kalidevapura Jagannath; Roy, Debasish; Vasu, Ram Mohan

2016-08-01

A simple noninterferometric optical probe is developed to estimate wavefront distortion suffered by a plane wave in its passage through density variations in a hypersonic flow obstructed by a test model in a typical shock tunnel. The probe has a plane light wave trans-illuminating the flow and casting a shadow of a continuous-tone sinusoidal grating. Through a geometrical optics, eikonal approximation to the distorted wavefront, a bilinear approximation to it is related to the location-dependent shift (distortion) suffered by the grating, which can be read out space-continuously from the projected grating image. The processing of the grating shadow is done through an efficient Fourier fringe analysis scheme, either with a windowed or global Fourier transform (WFT and FT). For comparison, wavefront slopes are also estimated from shadows of random-dot patterns, processed through cross correlation. The measured slopes are suitably unwrapped by using a discrete cosine transform (DCT)-based phase unwrapping procedure, and also through iterative procedures. The unwrapped phase information is used in an iterative scheme, for a full quantitative recovery of density distribution in the shock around the model, through refraction tomographic inversion. Hypersonic flow field parameters around a missile-shaped body at a free-stream Mach number of ∼8 measured using this technique are compared with the numerically estimated values. It is shown that, while processing a wavefront with small space-bandwidth product (SBP) the FT inversion gave accurate results with computational efficiency; computation-intensive WFT was needed for similar results when dealing with larger SBP wavefronts.

Pulsed spatial phase-shifting digital shearography based on a micropolarizer camera

NASA Astrophysics Data System (ADS)

Aranchuk, Vyacheslav; Lal, Amit K.; Hess, Cecil F.; Trolinger, James Davis; Scott, Eddie

2018-02-01

We developed a pulsed digital shearography system that utilizes the spatial phase-shifting technique. The system employs a commercial micropolarizer camera and a double pulse laser, which allows for instantaneous phase measurements. The system can measure dynamic deformation of objects as large as 1 m at a 2-m distance during the time between two laser pulses that range from 30 μs to 30 ms. The ability of the system to measure dynamic deformation was demonstrated by obtaining phase wrapped and unwrapped shearograms of a vibrating object.

Local residue coupling strategies by neural network for InSAR phase unwrapping

NASA Astrophysics Data System (ADS)

Refice, Alberto; Satalino, Giuseppe; Chiaradia, Maria T.

1997-12-01

Phase unwrapping is one of the toughest problems in interferometric SAR processing. The main difficulties arise from the presence of point-like error sources, called residues, which occur mainly in close couples due to phase noise. We present an assessment of a local approach to the resolution of these problems by means of a neural network. Using a multi-layer perceptron, trained with the back- propagation scheme on a series of simulated phase images, fashion the best pairing strategies for close residue couples. Results show that god efficiencies and accuracies can have been obtained, provided a sufficient number of training examples are supplied. Results show that good efficiencies and accuracies can be obtained, provided a sufficient number of training examples are supplied. The technique is tested also on real SAR ERS-1/2 tandem interferometric images of the Matera test site, showing a good reduction of the residue density. The better results obtained by use of the neural network as far as local criteria are adopted appear justified given the probabilistic nature of the noise process on SAR interferometric phase fields and allows to outline a specifically tailored implementation of the neural network approach as a very fast pre-processing step intended to decrease the residue density and give sufficiently clean images to be processed further by more conventional techniques.

Geodetic Measurements and Numerical Models of Rifting in Northern Iceland for 1993-1999

NASA Astrophysics Data System (ADS)

Ali, T.; Feigl, K.; Masterlark, T.; Carr, B. B.; Sigmundsson, F.; Thurber, C. H.

2009-12-01

Rifting occurs as episodes of active deformation in individual rift segments of the Northern Volcanic Zone (NVZ) of Iceland. To measure the deformation, we use interferometric analysis of synthetic aperture radar (InSAR) data acquired between 1993 and 1999. Preliminary results suggest that a complex interplay of multiple inflating and deflating sources at depth is required to account for the observed deformation. In an effort to integrate heterogeneous constraining information (kinematic plate spreading, seismic tomography and anisotropy, and thermal and rheologic structures), we develop finite element models that simulate the underlying sources and processes associated with rifting events to quantitatively understand the magmatic plumbing system beneath Krafla central volcano and rift segment, the site of the most recent rifting episode in the NVZ. Calibration parameters include the positions, geometries, and flux rates for elements of the plumbing system, as well as material properties. The General Inversion for Phase Technique (GIPhT) [Feigl and Thurber, Geophys. J. Int., 2009] is used to model the InSAR phase data directly, without unwrapping parameters. It operates on wrapped phase values ranging from -1/2 to +1/2 cycles. By defining a cost function that quantifies the misfit between observed and modeled values in terms of wrapped phase, GIPhT can estimate parameters in a geophysical model by minimizing the cost function. Since this approach can handle noisy, wrapped phase data, it avoids the pitfalls of phase-unwrapping approaches. Consequently, GIPhT allows the analysis, interpretation and modeling of more interferometric pairs than approaches that require unwrapping. GIPhT also allows statistical testing of hypotheses because the wrapped phase residuals follow a Von Mises distribution. As a result, the model parameters estimated by GIPhT include formal uncertainties. We test the hypothesis that deformation in the rift zone occurred at a constant (secular) rate of volume change over the observed time interval. We evaluate several functional forms for the temporal evolution of the sources. The best fitting model employs a linear time function, indicative of secular deformation in the rift zone. We conclude that post-rifting deformation following the 1975-1984 Krafla fires rifting episode has dissipated on a time scale on the order of a decade.

Iterative-Transform Phase Retrieval Using Adaptive Diversity

NASA Technical Reports Server (NTRS)

Dean, Bruce H.

2007-01-01

A phase-diverse iterative-transform phase-retrieval algorithm enables high spatial-frequency, high-dynamic-range, image-based wavefront sensing. [The terms phase-diverse, phase retrieval, image-based, and wavefront sensing are defined in the first of the two immediately preceding articles, Broadband Phase Retrieval for Image-Based Wavefront Sensing (GSC-14899-1).] As described below, no prior phase-retrieval algorithm has offered both high dynamic range and the capability to recover high spatial-frequency components. Each of the previously developed image-based phase-retrieval techniques can be classified into one of two categories: iterative transform or parametric. Among the modifications of the original iterative-transform approach has been the introduction of a defocus diversity function (also defined in the cited companion article). Modifications of the original parametric approach have included minimizing alternative objective functions as well as implementing a variety of nonlinear optimization methods. The iterative-transform approach offers the advantage of ability to recover low, middle, and high spatial frequencies, but has disadvantage of having a limited dynamic range to one wavelength or less. In contrast, parametric phase retrieval offers the advantage of high dynamic range, but is poorly suited for recovering higher spatial frequency aberrations. The present phase-diverse iterative transform phase-retrieval algorithm offers both the high-spatial-frequency capability of the iterative-transform approach and the high dynamic range of parametric phase-recovery techniques. In implementation, this is a focus-diverse iterative-transform phaseretrieval algorithm that incorporates an adaptive diversity function, which makes it possible to avoid phase unwrapping while preserving high-spatial-frequency recovery. The algorithm includes an inner and an outer loop (see figure). An initial estimate of phase is used to start the algorithm on the inner loop, wherein multiple intensity images are processed, each using a different defocus value. The processing is done by an iterative-transform method, yielding individual phase estimates corresponding to each image of the defocus-diversity data set. These individual phase estimates are combined in a weighted average to form a new phase estimate, which serves as the initial phase estimate for either the next iteration of the iterative-transform method or, if the maximum number of iterations has been reached, for the next several steps, which constitute the outerloop portion of the algorithm. The details of the next several steps must be omitted here for the sake of brevity. The overall effect of these steps is to adaptively update the diversity defocus values according to recovery of global defocus in the phase estimate. Aberration recovery varies with differing amounts as the amount of diversity defocus is updated in each image; thus, feedback is incorporated into the recovery process. This process is iterated until the global defocus error is driven to zero during the recovery process. The amplitude of aberration may far exceed one wavelength after completion of the inner-loop portion of the algorithm, and the classical iterative transform method does not, by itself, enable recovery of multi-wavelength aberrations. Hence, in the absence of a means of off-loading the multi-wavelength portion of the aberration, the algorithm would produce a wrapped phase map. However, a special aberration-fitting procedure can be applied to the wrapped phase data to transfer at least some portion of the multi-wavelength aberration to the diversity function, wherein the data are treated as known phase values. In this way, a multiwavelength aberration can be recovered incrementally by successively applying the aberration-fitting procedure to intermediate wrapped phase maps. During recovery, as more of the aberration is transferred to the diversity function following successive iterations around the ter loop, the estimated phase ceases to wrap in places where the aberration values become incorporated as part of the diversity function. As a result, as the aberration content is transferred to the diversity function, the phase estimate resembles that of a reference flat.

Geodetic measurements and models of rifting in Northern Iceland for 1993-1998 (Invited)

NASA Astrophysics Data System (ADS)

Ali, T.; Feigl, K.; Thurber, C. H.; Masterlark, T.; Carr, B.; Sigmundsson, F.

2010-12-01

Rifting occurs as episodes of active deformation in individual rift segments of the Northern Volcanic Zone (NVZ) in Iceland. Here we simulate deformation around the Krafla central volcano and rift system in NVZ in order to explain InSAR data acquired between 1993 and 1998. The General Inversion for Phase Technique (GIPhT) is used to model the InSAR phase data directly, without unwrapping [Feigl and Thurber, Geophys. J. Int., 2009]. Using a parallel simulated annealing algorithm, GIPhT minimizes the non-linear cost function that quantifies the misfit between observed and modeled values of the phase. We test the hypothesis that the observed deformation can be explained by a combination of at least three processes including: (i) secular plate spreading, (ii) post rifting relaxation following the Krafla rifting episode (1975-1984), and (iii) deflation of a shallow magma chamber beneath the central volcano. The calibration parameters include material properties of upper/lower crust and mantle as well as flux rates for the elements of the plumbing system. The best fitting Maxwell model favors a stronger lower crust (~1.0E+20 Pa.s) and a mantle viscosity of ~1.0E+18 Pa.s as well as a shallow deflating magma chamber. The deformation appears to be linear in time over the observed interval.

A multi-frequency inverse-phase error compensation method for projector nonlinear in 3D shape measurement

NASA Astrophysics Data System (ADS)

Mao, Cuili; Lu, Rongsheng; Liu, Zhijian

2018-07-01

In fringe projection profilometry, the phase errors caused by the nonlinear intensity response of digital projectors needs to be correctly compensated. In this paper, a multi-frequency inverse-phase method is proposed. The theoretical model of periodical phase errors is analyzed. The periodical phase errors can be adaptively compensated in the wrapped maps by using a set of fringe patterns. The compensated phase is then unwrapped with multi-frequency method. Compared with conventional methods, the proposed method can greatly reduce the periodical phase error without calibrating measurement system. Some simulation and experimental results are presented to demonstrate the validity of the proposed approach.

Presentation Of The Small Baseline NSBAS Processing Chain On A Case Example: The ETNA Deformation Monitoring From 2003 to 2010 Using ENVISAT Data

NASA Astrophysics Data System (ADS)

Doin, Marie-Pierre; Lodge, Felicity; Guillaso, Stephane; Jolivet, Romain; Lasserre, Cecile; Ducret, Gabriel; Grandin, Raphael; Pathier, Erwan; Pinel, Virginie

2012-01-01

We assemble a processing chain that handles InSAR computation from raw data to time series analysis. A large part of the chain (from raw data to geocoded unwrapped interferograms) is based on ROI PAC modules (Rosen et al., 2004), with original routines rearranged and combined with new routines to process in series and in a common radar geometry all SAR images and interferograms. A new feature of the software is the range-dependent spectral filtering to improve coherence in interferograms with long spatial baselines. Additional components include a module to estimate and remove digital elevation model errors before unwrapping, a module to mitigate the effects of the atmospheric phase delay and remove residual orbit errors, and a module to construct the phase change time series from small baseline interferograms (Berardino et al. 2002). This paper describes the main elements of the processing chain and presents an example of application of the software using a data set from the ENVISAT mission covering the Etna volcano.

Simultaneous shape and deformation measurements in a blood vessel model by two wavelength interferometry

NASA Astrophysics Data System (ADS)

Andrés, Nieves; Pinto, Cristina; Lobera, Julia; Palero, Virginia; Arroyo, M. Pilar

2017-06-01

Holographic techniques have been used to measure the shape and the radial deformation of a blood vessel model and a real sheep aorta. Measurements are obtained from several holograms recorded for different object states. For each object state, two holograms with two different wavelengths are multiplexed in the same digital recording. Thus both holograms are simultaneously recorded but the information from each of them is separately obtained. The shape analysis gives a wrapped phase map whose fringes are related to a synthetic wavelength. After a filtering and unwrapping process, the 3D shape can be obtained. The shape data for each line are fitted to a circumference in order to determine the local vessel radius and center. The deformation analysis also results in a wrapped phase map, but the fringes are related to the laser wavelength used in the corresponding hologram. After the filtering and unwrapping process, a 2D map of the deformation in an out-of-plane direction is reconstructed. The radial deformation is then calculated by using the shape information.

Unwrapping Closed Timelike Curves

NASA Astrophysics Data System (ADS)

Slobodov, Sergei

2008-12-01

Closed timelike curves (CTCs) appear in many solutions of the Einstein equation, even with reasonable matter sources. These solutions appear to violate causality and so are considered problematic. Since CTCs reflect the global properties of a spacetime, one can attempt to extend a local CTC-free patch of such a spacetime in a way that does not give rise to CTCs. One such procedure is informally known as unwrapping. However, changes in global identifications tend to lead to local effects, and unwrapping is no exception, as it introduces a special kind of singularity, called quasi-regular. This “unwrapping” singularity is similar to the string singularities. We define an unwrapping of a (locally) axisymmetric spacetime as the universal cover of the spacetime after one or more of the local axes of symmetry is removed. We give two examples of unwrapping of essentially 2+1 dimensional spacetimes with CTCs, the Gott spacetime and the Gödel spacetime. We show that the unwrapped Gott spacetime, while singular, is at least devoid of CTCs. In contrast, the unwrapped Gödel spacetime still contains CTCs through every point. A “multiple unwrapping” procedure is devised to remove the remaining circular CTCs. We conclude that, based on the given examples, CTCs appearing in the solutions of the Einstein equation are not simply a mathematical artifact of coordinate identifications. Alternative extensions of spacetimes with CTCs tend to lead to other pathologies, such as naked quasi-regular singularities.

Quantitative analysis of retina layer elasticity based on automatic 3D segmentation (Conference Presentation)

NASA Astrophysics Data System (ADS)

He, Youmin; Qu, Yueqiao; Zhang, Yi; Ma, Teng; Zhu, Jiang; Miao, Yusi; Humayun, Mark; Zhou, Qifa; Chen, Zhongping

2017-02-01

Age-related macular degeneration (AMD) is an eye condition that is considered to be one of the leading causes of blindness among people over 50. Recent studies suggest that the mechanical properties in retina layers are affected during the early onset of disease. Therefore, it is necessary to identify such changes in the individual layers of the retina so as to provide useful information for disease diagnosis. In this study, we propose using an acoustic radiation force optical coherence elastography (ARF-OCE) system to dynamically excite the porcine retina and detect the vibrational displacement with phase resolved Doppler optical coherence tomography. Due to the vibrational mechanism of the tissue response, the image quality is compromised during elastogram acquisition. In order to properly analyze the images, all signals, including the trigger and control signals for excitation, as well as detection and scanning signals, are synchronized within the OCE software and are kept consistent between frames, making it possible for easy phase unwrapping and elasticity analysis. In addition, a combination of segmentation algorithms is used to accommodate the compromised image quality. An automatic 3D segmentation method has been developed to isolate and measure the relative elasticity of every individual retinal layer. Two different segmentation schemes based on random walker and dynamic programming are implemented. The algorithm has been validated using a 3D region of the porcine retina, where individual layers have been isolated and analyzed using statistical methods. The errors compared to manual segmentation will be calculated.

A novel algorithm for laser self-mixing sensors used with the Kalman filter to measure displacement

NASA Astrophysics Data System (ADS)

Sun, Hui; Liu, Ji-Gou

2018-07-01

This paper proposes a simple and effective method for estimating the feedback level factor C in a self-mixing interferometric sensor. It is used with a Kalman filter to retrieve the displacement. Without the complicated and onerous calculation process of the general C estimation method, a final equation is obtained. Thus, the estimation of C only involves a few simple calculations. It successfully retrieves the sinusoidal and aleatory displacement by means of simulated self-mixing signals in both weak and moderate feedback regimes. To deal with the errors resulting from noise and estimate bias of C and to further improve the retrieval precision, a Kalman filter is employed following the general phase unwrapping method. The simulation and experiment results show that the retrieved displacement using the C obtained with the proposed method is comparable to the joint estimation of C and α. Besides, the Kalman filter can significantly decrease measurement errors, especially the error caused by incorrectly locating the peak and valley positions of the signal.

Investigation of thermomechanical effects of lighting conditions on canvas paintings by laser shearography

NASA Astrophysics Data System (ADS)

Meybodi, M. K.; Dobrev, I.; Klausmeyer, P.; Harrington, E. J.; Furlong, C.

Quantitative techniques to characterize thermomechanical effects of light on canvas paintings are necessary in order to better understand the deleterious effects that light has on precious art collections in museum exhibitions. In this paper, we present advances in the development of a customized laser shearography system for temporal characterization of inplane displacements of canvas paintings when subjected to specific lighting conditions. The shearography system is synchronized with a thermal IR camera and concomitant measurements of derivatives of displacements along two orthogonal shearing directions as well as thermal fields are performed. Due to the nature of the measurements, we have developed real-time temporal phase unwrapping algorithms and high-resolution Fast Fourier Transform (FFT) methods to calibrate applied shearing levels. In addition, we are developing methods to isolate thermally-induced components from randomly-induced mechanical vibrations that occur in museum environments by application of IR imaging data. Representative examples are shown, which illustrate capabilities to measure, detect, and map crack propagation as a function of lighting conditions and time.

Model-based multi-fringe interferometry using Zernike polynomials

NASA Astrophysics Data System (ADS)

Gu, Wei; Song, Weihong; Wu, Gaofeng; Quan, Haiyang; Wu, Yongqian; Zhao, Wenchuan

2018-06-01

In this paper, a general phase retrieval method is proposed, which is based on one single interferogram with a small amount of fringes (either tilt or power). Zernike polynomials are used to characterize the phase to be measured; the phase distribution is reconstructed by a non-linear least squares method. Experiments show that the proposed method can obtain satisfactory results compared to the standard phase-shifting interferometry technique. Additionally, the retrace errors of proposed method can be neglected because of the few fringes; it does not need any auxiliary phase shifting facilities (low cost) and it is easy to implement without the process of phase unwrapping.

Referenceless MR thermometry-a comparison of five methods.

PubMed

Zou, Chao; Tie, Changjun; Pan, Min; Wan, Qian; Liang, Changhong; Liu, Xin; Chung, Yiu-Cho

2017-01-07

Proton resonance frequency shift (PRFS) MR thermometry is commonly used to measure temperature in thermotherapy. The method requires a baseline temperature map and is therefore motion sensitive. Several referenceless MR thermometry methods were proposed to address this problem but their performances have never been compared. This study compared the performance of five referenceless methods through simulation, heating of ex vivo tissues and in vivo imaging of the brain and liver of healthy volunteers. Mean, standard deviation, root mean square, 2/98 percentiles of error were used as performance metrics. Probability density functions (PDF) of the error distribution for these methods in the different tests were also compared. The results showed that the phase gradient method (PG) exhibited largest error in all scenarios. The original method (ORG) and the complex field estimation method (CFE) had similar performance in all experiments. The phase finite difference method (PFD) and the near harmonic method (NH) were better than other methods, especially in the lower signal-to-noise ratio (SNR) and fast changing field cases. Except for PG, the PDFs of each method were very similar among the different experiments. Since phase unwrapping in ORG and NH is computationally demanding and subject to image SNR, PFD and CFE would be good choices as they do not need phase unwrapping. The results here would facilitate the choice of appropriate referenceless methods in various MR thermometry applications.

Referenceless MR thermometry—a comparison of five methods

NASA Astrophysics Data System (ADS)

Zou, Chao; Tie, Changjun; Pan, Min; Wan, Qian; Liang, Changhong; Liu, Xin; Chung, Yiu-Cho

2017-01-01

Proton resonance frequency shift (PRFS) MR thermometry is commonly used to measure temperature in thermotherapy. The method requires a baseline temperature map and is therefore motion sensitive. Several referenceless MR thermometry methods were proposed to address this problem but their performances have never been compared. This study compared the performance of five referenceless methods through simulation, heating of ex vivo tissues and in vivo imaging of the brain and liver of healthy volunteers. Mean, standard deviation, root mean square, 2/98 percentiles of error were used as performance metrics. Probability density functions (PDF) of the error distribution for these methods in the different tests were also compared. The results showed that the phase gradient method (PG) exhibited largest error in all scenarios. The original method (ORG) and the complex field estimation method (CFE) had similar performance in all experiments. The phase finite difference method (PFD) and the near harmonic method (NH) were better than other methods, especially in the lower signal-to-noise ratio (SNR) and fast changing field cases. Except for PG, the PDFs of each method were very similar among the different experiments. Since phase unwrapping in ORG and NH is computationally demanding and subject to image SNR, PFD and CFE would be good choices as they do not need phase unwrapping. The results here would facilitate the choice of appropriate referenceless methods in various MR thermometry applications.

Determining the location of buried plastic water pipes from measurements of ground surface vibration

NASA Astrophysics Data System (ADS)

Muggleton, J. M.; Brennan, M. J.; Gao, Y.

2011-09-01

‘Mapping the Underworld' is a UK-based project, which aims to create a multi-sensor device that combines complementary technologies for remote buried utility service detection and location. One of the technologies to be incorporated in the device is low-frequency vibro-acoustics, and techniques for detecting buried infrastructure, in particular plastic water pipes, are being investigated. One of the proposed techniques involves excitation of the pipe at some known location with concurrent vibrational mapping of the ground surface in order to infer the location of the remainder of the pipe. In this paper, measurements made on a dedicated pipe rig are reported. Frequency response measurements relating vibrational velocity on the ground to the input excitation were acquired. Contour plots of the unwrapped phase revealed the location of the pipe to within 0.1-0.2 m. Magnitude contour plots revealed the excitation point and also the location of the pipe end. By examining the unwrapped phase gradients along a line above the pipe, it was possible to identify the wave-type within the pipe responsible for the ground surface vibration. Furthermore, changes in the ground surface phase speed computed using this method enabled the location of the end of the pipe to be confirmed.

Beam shaping for laser-based adaptive optics in astronomy.

PubMed

Béchet, Clémentine; Guesalaga, Andrés; Neichel, Benoit; Fesquet, Vincent; González-Núñez, Héctor; Zúñiga, Sebastián; Escarate, Pedro; Guzman, Dani

2014-06-02

The availability and performance of laser-based adaptive optics (AO) systems are strongly dependent on the power and quality of the laser beam before being projected to the sky. Frequent and time-consuming alignment procedures are usually required in the laser systems with free-space optics to optimize the beam. Despite these procedures, significant distortions of the laser beam have been observed during the first two years of operation of the Gemini South multi-conjugate adaptive optics system (GeMS). A beam shaping concept with two deformable mirrors is investigated in order to provide automated optimization of the laser quality for astronomical AO. This study aims at demonstrating the correction of quasi-static aberrations of the laser, in both amplitude and phase, testing a prototype of this two-deformable mirror concept on GeMS. The paper presents the results of the preparatory study before the experimental phase. An algorithm to control amplitude and phase correction, based on phase retrieval techniques, is presented with a novel unwrapping method. Its performance is assessed via numerical simulations, using aberrations measured at GeMS as reference. The results predict effective amplitude and phase correction of the laser distortions with about 120 actuators per mirror and a separation of 1.4 m between the mirrors. The spot size is estimated to be reduced by up to 15% thanks to the correction. In terms of AO noise level, this has the same benefit as increasing the photon flux by 40%.

Incoherent averaging of phase singularities in speckle-shearing interferometry.

PubMed

Mantel, Klaus; Nercissian, Vanusch; Lindlein, Norbert

2014-08-01

Interferometric speckle techniques are plagued by the omnipresence of phase singularities, impairing the phase unwrapping process. To reduce the number of phase singularities by physical means, an incoherent averaging of multiple speckle fields may be applied. It turns out, however, that the results may strongly deviate from the expected √N behavior. Using speckle-shearing interferometry as an example, we investigate the mechanism behind the reduction of phase singularities, both by calculations and by computer simulations. Key to an understanding of the reduction mechanism during incoherent averaging is the representation of the physical averaging process in terms of certain vector fields associated with each speckle field.

DEM corrections on series of wrapped interferograms as a tool to improve deformation monitoring around Siling Co lake in Tibet.

NASA Astrophysics Data System (ADS)

Ducret, Gabriel; Doin, Marie-Pierre; Lasserre, Cécile; Guillaso, Stéphane; Twardzik, Cedric

2010-05-01

In order to increase our knowledge on the lithosphere rheological structure under the Tibetan plateau, we study the loading response due to lake Siling Co water level changes. The challenge here is to measure the deformation with an accuracy good enough to obtain a correct sensivity to model parameters. InSAR method in theory allow to observe the spatio-temporal pattern of deformation, however its exploitation is limited by unwrapping difficulties linked with temporal decorrelation and DEM errors in sloppy and partially incoherent areas. This lake is a large endhoreic lake at 4500~m elevation located North of the strike-slip right lateral Gyaring Co fault, and just to the south of the Bangong Nujiang suture zone, on which numerous left-lateral strike slip are branching. The Siling Co lake water level has strongly changed in the past, as testified by numerous traces of palaeo-shorelines, clearly marked until 60 m above present-day level. In the last years, the water level in this lake increased by about 1~m/yr, a remarkably fast rate given the large lake surface (1600~km2). The present-day ground subsidence associated to the water level increase is studied by InSAR using all ERS and Envisat archived data on track 219, obtained through the Dragon cooperation program. We chose to compute 750~km long differential interferograms centered on the lake to provide a good constraint on the reference. A redundant network of small baseline interferograms is computed with perpendicular baseline smaller than 500~m. The coherence is quickly lost with time (over one year), particularly to the North of the lake because of freeze-thaw cycles. Unwrapping thus becomes hazardous in this configuration, and fails on phase jumps created by DEM contrasts. The first work is to improve the simulated elevation field in radar geometry from the Digital Elevation Model (here SRTM) in order to exploit the interferometric phase in layover areas. Then, to estimate DEM error, we mix the Permanent Scattered and Small Baseline methods. The aim is to improve spatial and temporal coherence. We use as a reference strong and stable amplitude points or spatially coherent areas, scattered within the SAR scene. We calculate the relative elevation error of every point in the neighbourhood of reference points. A global inversion allows to perform spatial integration of local errors at the radar image scale. Finally, we evaluate how the DEM correct ion of wrapped interferograms improves the unwrapping step. Furthermore, to help unwrapping we also compute and then remove from the wrapped interferograms the residual orbital trend and the phase-elevation relationship due variations in atmospheric stratification. Stack of unwrapped small baseline interferograms show clearly the average subsidence rate around the lake of about 4 mm/yr associated to the present-day water level increase. To compare the observed deformation to the water level elevation changes, we extract from satellite images in the period 1972 to 2009 the water level changes. The deformation signal is discussed in terms of end-members visco-elastic models of the lithosphere and uppermost mantle.

Multi-temporal InSAR measurement of interseimic motion on the eastern Tibet border

NASA Astrophysics Data System (ADS)

Doin, M. P.; Lasserre, C.; He, P.; de Sigoyer, J.

2014-12-01

We use here SAR interferometry using archived Envisat data to map the interseismic deformation of eastern Tibet. The area under study starts just South of the Haiyuan fault, crosses the eastern termination of the Kunlun fault and the bend on the XianShuiHe fault to the South. It includes the Longriba fault system, an active structure located 150 km west of the Longmen Shan front (Xu et al., 2008, Ren et al., 2013). GPS data suggest that it may accommodate a large part of the present-day relative movement (6-8 mm/yr) between the Aba block and the south China block (Thatcher, 2007, Shen et al 2005). The Longriba and the Longmen Shan faults might be linked at depth by a decollement zone or by ductile shear in the crust (Shu et al., 2008). We process three adjacent Envisat 1000 km long swaths crossing this mountainous and vegetated terrain using a small baseline strategy. The interferograms show numerous phase perturbations that mask the interseismic motion due to : (1) coherence loss, (2) stratified atmospheric delays, (3) DEM error contribution, (4) the 2008 Sichuan earthquake. We will show how we tackle these limitations and display the effect of successive corrections. Focus will first be brought to the corrections applied before filtering and unwrapping, that increase phase spatial continuity. We estimate empirically stratified atmospheric delay polynomial relationship, depending on azimuth and elevation, on wrapped interferograms. We then estimate the local DEM error for each pixel. Multi-looking and filtering are based on various measures of pixel reliability in order to increase the signal to noise ratio of filtered interferograms. Finally, unwrapping is obtained by a region growing algorithm, from the most reliable areas to the least, avoiding to cross layover areas. Time series of phase delay maps in the Longriba area are dominated by a side lobe of the May 2008 Sichuan earthquake. After its extraction and correction, principal component analysis clearly evidences a linear trend modulated south of the Longriba fault system by post-seismic transient motion, in agreement with GPS data (Huang et al., 2014). Finally, we obtain a LOS velocity map of interseismic motion with an amplitude of a few mm/yr. We will discuss strain localization along the main eastern Tibet faults and possible vertical motion.

Reliable estimation of orbit errors in spaceborne SAR interferometry. The network approach

NASA Astrophysics Data System (ADS)

Bähr, Hermann; Hanssen, Ramon F.

2012-12-01

An approach to improve orbital state vectors by orbit error estimates derived from residual phase patterns in synthetic aperture radar interferograms is presented. For individual interferograms, an error representation by two parameters is motivated: the baseline error in cross-range and the rate of change of the baseline error in range. For their estimation, two alternatives are proposed: a least squares approach that requires prior unwrapping and a less reliable gridsearch method handling the wrapped phase. In both cases, reliability is enhanced by mutual control of error estimates in an overdetermined network of linearly dependent interferometric combinations of images. Thus, systematic biases, e.g., due to unwrapping errors, can be detected and iteratively eliminated. Regularising the solution by a minimum-norm condition results in quasi-absolute orbit errors that refer to particular images. For the 31 images of a sample ENVISAT dataset, orbit corrections with a mutual consistency on the millimetre level have been inferred from 163 interferograms. The method itself qualifies by reliability and rigorous geometric modelling of the orbital error signal but does not consider interfering large scale deformation effects. However, a separation may be feasible in a combined processing with persistent scatterer approaches or by temporal filtering of the estimates.

Application of Phase Shifted, Laser Feedback Interferometry to Fluid Physics

NASA Technical Reports Server (NTRS)

Ovryn, Ben; Eppell, Steven J.; Andrews, James H.; Khaydarov, John

1996-01-01

We have combined the principles of phase-shifting interferometry (PSI) and laser-feedback interferometry (LFI) to produce a new instrument that can measure both optical path length (OPL) changes and discern sample reflectivity variations. In LFI, coherent feedback of the incident light either reflected directly from a surface or reflected after transmission through a region of interest will modulate the output intensity of the laser. LFI can yield a high signal-to-noise ratio even for low reflectivity samples. By combining PSI and LFI, we have produced a robust instrument, based upon a HeNe laser, with high dynamic range that can be used to measure either static (dc) or oscillatory changes along the optical path. As with other forms of interferometry, large changes in OPL require phase unwrapping. Conversely, small phase changes are limited by the fraction of a fringe that can be measured. We introduce the phase shifts with an electro-optic modulator (EOM) and use either the Carre or Hariharan algorithms to determine the phase and visibility. We have determined the accuracy and precision of our technique by measuring both the bending of a cantilevered piezoelectric bimorph and linear ramps to the EOM. Using PSI, sub-nanometer displacements can be measured. We have combined our interferometer with a commercial microscope and scanning piezoelectric stage and have measured the variation in OPL and visibility for drops of PDMS (silicone oil) on coated single crystal silicon. Our measurement of the static contact angle agrees with the value of 68 deg stated in the literature.

Nasadem Global Elevation Model: Methods and Progress

NASA Astrophysics Data System (ADS)

Crippen, R.; Buckley, S.; Agram, P.; Belz, E.; Gurrola, E.; Hensley, S.; Kobrick, M.; Lavalle, M.; Martin, J.; Neumann, M.; Nguyen, Q.; Rosen, P.; Shimada, J.; Simard, M.; Tung, W.

2016-06-01

NASADEM is a near-global elevation model that is being produced primarily by completely reprocessing the Shuttle Radar Topography Mission (SRTM) radar data and then merging it with refined ASTER GDEM elevations. The new and improved SRTM elevations in NASADEM result from better vertical control of each SRTM data swath via reference to ICESat elevations and from SRTM void reductions using advanced interferometric unwrapping algorithms. Remnant voids will be filled primarily by GDEM3, but with reduction of GDEM glitches (mostly related to clouds) and therefore with only minor need for secondary sources of fill.

Evaluation of peracetic acid permeation during flash sterilization through pharmaceutical plastic polymers used in cytotoxic reconstitution units.

PubMed

Havard, Laurent; Fellous-Jerome, Joelle; Bonan, Brigitte; Pradeau, Dominique; Prognon, Patrice

2005-01-01

Peracetic acid (PAA) permeation in flash sterilization was studied using three different plastic infusion bags made of polypropylene and polyethylene, filled with glucose 5% or NaCl 0.9%. The pH was measured and acetic acid (AA) and PAA concentrations were made by reverse phase high-performance liquid chromatography (RP-HPLC). PAA was derivatized by oxidation of methyl tolyl sulfide (MTS) into methyl tolyl sulfoxide (MTSO) detected by ultraviolet (UV) absorbance at 230 nm. The technique has a sensitivity of 0.3 microg x L(-1) and was highly specific. Results showed that pH measurements remain constant and demonstrated the absence of PAA permeation, which was confirmed by the absence of AA permeation regardless of the brand tested, with both unwrapped and overwrapped infusion bags, when flash sterilization is applied. These results allow flash sterilization to be performed with unwrapped infusion bags without any risk of drug degradation by PAA. This makes compounding safer and easier, which improves productivity.

Small-scale loess landslide monitoring with small baseline subsets interferometric synthetic aperture radar technique-case study of Xingyuan landslide, Shaanxi, China

NASA Astrophysics Data System (ADS)

Zhao, Chaoying; Zhang, Qin; He, Yang; Peng, Jianbing; Yang, Chengsheng; Kang, Ya

2016-04-01

Small baseline subsets interferometric synthetic aperture radar technique is analyzed to detect and monitor the loess landslide in the southern bank of the Jinghe River, Shaanxi province, China. Aiming to achieve the accurate preslide time-series deformation results over small spatial scale and abrupt temporal deformation loess landslide, digital elevation model error, coherence threshold for phase unwrapping, and quality of unwrapping interferograms must be carefully checked in advance. In this experience, land subsidence accompanying a landslide with the distance <1 km is obtained, which gives a sound precursor for small-scale loess landslide detection. Moreover, the longer and continuous land subsidence has been monitored while deformation starting point for the landslide is successfully inverted, which is key to monitoring the similar loess landslide. In addition, the accelerated landslide deformation from one to two months before the landslide can provide a critical clue to early warning of this kind of landslide.

Multifrequency InSAR height reconstruction through maximum likelihood estimation of local planes parameters.

PubMed

Pascazio, Vito; Schirinzi, Gilda

2002-01-01

In this paper, a technique that is able to reconstruct highly sloped and discontinuous terrain height profiles, starting from multifrequency wrapped phase acquired by interferometric synthetic aperture radar (SAR) systems, is presented. We propose an innovative unwrapping method, based on a maximum likelihood estimation technique, which uses multifrequency independent phase data, obtained by filtering the interferometric SAR raw data pair through nonoverlapping band-pass filters, and approximating the unknown surface by means of local planes. Since the method does not exploit the phase gradient, it assures the uniqueness of the solution, even in the case of highly sloped or piecewise continuous elevation patterns with strong discontinuities.

Software Method for Computed Tomography Cylinder Data Unwrapping, Re-slicing, and Analysis

NASA Technical Reports Server (NTRS)

Roth, Don J.

2013-01-01

A software method has been developed that is applicable for analyzing cylindrical and partially cylindrical objects inspected using computed tomography (CT). This method involves unwrapping and re-slicing data so that the CT data from the cylindrical object can be viewed as a series of 2D sheets (or flattened onion skins ) in addition to a series of top view slices and 3D volume rendering. The advantages of viewing the data in this fashion are as follows: (1) the use of standard and specialized image processing and analysis methods is facilitated having 2D array data versus a volume rendering; (2) accurate lateral dimensional analysis of flaws is possible in the unwrapped sheets versus volume rendering; (3) flaws in the part jump out at the inspector with the proper contrast expansion settings in the unwrapped sheets; and (4) it is much easier for the inspector to locate flaws in the unwrapped sheets versus top view slices for very thin cylinders. The method is fully automated and requires no input from the user except proper voxel dimension from the CT experiment and wall thickness of the part. The software is available in 32-bit and 64-bit versions, and can be used with binary data (8- and 16-bit) and BMP type CT image sets. The software has memory (RAM) and hard-drive based modes. The advantage of the (64-bit) RAM-based mode is speed (and is very practical for users of 64-bit Windows operating systems and computers having 16 GB or more RAM). The advantage of the hard-drive based analysis is one can work with essentially unlimited-sized data sets. Separate windows are spawned for the unwrapped/re-sliced data view and any image processing interactive capability. Individual unwrapped images and un -wrapped image series can be saved in common image formats. More information is available at http://www.grc.nasa.gov/WWW/OptInstr/ NDE_CT_CylinderUnwrapper.html.

Post-eruptive inflation of Okmok Volcano, Alaska, from InSAR, 2008–2014

USGS Publications Warehouse

Qu, Feifei; Lu, Zhong; Poland, Michael; Freymueller, Jeffrey T.; Zhang, Qin; Jung, Hyung-Sup

2016-01-01

Okmok, a ~10-km wide caldera that occupies most of the northeastern end of Umnak Island, is one of the most active volcanoes in the Aleutian arc. The most recent eruption at Okmok during July-August 2008 was by far its largest and most explosive since at least the early 19th century. We investigate post-eruptive magma supply and storage at the volcano during 2008–2014 by analyzing all available synthetic aperture radar (SAR) images of Okmok acquired during that time period using the multi-temporal InSAR technique. Data from the C-band Envisat and X-band TerraSAR-X satellites indicate that Okmok started inflating very soon after the end of 2008 eruption at a time-variable rate of 48-130 mm/y, consistent with GPS measurements. The “model-assisted” phase unwrapping method is applied to improve the phase unwrapping operation for long temporal baseline pairs. The InSAR time-series is used as input for deformation source modeling, which suggests magma accumulating at variable rates in a shallow storage zone at ~3.9 km below sea level beneath the summit caldera, consistent with previous studies. The modeled volume accumulation in the 6 years following the 2008 eruption is ~75% of the 1997 eruption volume and ~25% of the 2008 eruption volume.

Distortion correction of echo planar images applying the concept of finite rate of innovation to point spread function mapping (FRIP).

PubMed

Nunes, Rita G; Hajnal, Joseph V

2018-06-01

Point spread function (PSF) mapping enables estimating the displacement fields required for distortion correction of echo planar images. Recently, a highly accelerated approach was introduced for estimating displacements from the phase slope of under-sampled PSF mapping data. Sampling schemes with varying spacing were proposed requiring stepwise phase unwrapping. To avoid unwrapping errors, an alternative approach applying the concept of finite rate of innovation to PSF mapping (FRIP) is introduced, using a pattern search strategy to locate the PSF peak, and the two methods are compared. Fully sampled PSF data was acquired in six subjects at 3.0 T, and distortion maps were estimated after retrospective under-sampling. The two methods were compared for both previously published and newly optimized sampling patterns. Prospectively under-sampled data were also acquired. Shift maps were estimated and deviations relative to the fully sampled reference map were calculated. The best performance was achieved when using FRIP with a previously proposed sampling scheme. The two methods were comparable for the remaining schemes. The displacement field errors tended to be lower as the number of samples or their spacing increased. A robust method for estimating the position of the PSF peak has been introduced.

Motion-induced error reduction by combining Fourier transform profilometry with phase-shifting profilometry.

PubMed

Li, Beiwen; Liu, Ziping; Zhang, Song

2016-10-03

We propose a hybrid computational framework to reduce motion-induced measurement error by combining the Fourier transform profilometry (FTP) and phase-shifting profilometry (PSP). The proposed method is composed of three major steps: Step 1 is to extract continuous relative phase maps for each isolated object with single-shot FTP method and spatial phase unwrapping; Step 2 is to obtain an absolute phase map of the entire scene using PSP method, albeit motion-induced errors exist on the extracted absolute phase map; and Step 3 is to shift the continuous relative phase maps from Step 1 to generate final absolute phase maps for each isolated object by referring to the absolute phase map with error from Step 2. Experiments demonstrate the success of the proposed computational framework for measuring multiple isolated rapidly moving objects.

Monitoring of ground movement in open pit iron mines of Carajás Province (Amazon region) based on A-DInSAR techniques using TerraSAR-X data

NASA Astrophysics Data System (ADS)

Silva, Guilherme Gregório; Mura, José Claudio; Paradella, Waldir Renato; Gama, Fabio Furlan; Temporim, Filipe Altoé

2017-04-01

Persistent scatterer interferometry (PSI) analysis of a large area is always a challenging task regarding the removal of the atmospheric phase component. This work presents an investigation of ground movement measurements based on a combination of differential SAR interferometry time-series (DTS) and PSI techniques, applied on a large area of extent with open pit iron mines located in Carajás (Brazilian Amazon Region), aiming at detecting linear and nonlinear ground movement. These mines have presented a history of instability, and surface monitoring measurements over sectors of the mines (pit walls) have been carried out based on ground-based radar and total station (prisms). Using a priori information regarding the topographic phase error and a phase displacement model derived from DTS, temporal phase unwrapping in the PSI processing and the removal of the atmospheric phases can be performed more efficiently. A set of 33 TerraSAR-X (TSX-1) images, acquired during the period from March 2012 to April 2013, was used to perform this investigation. The DTS analysis was carried out on a stack of multilook unwrapped interferograms using an extension of SVD to obtain the least-square solution. The height errors and deformation rates provided by the DTS approach were subtracted from the stack of interferograms to perform the PSI analysis. This procedure improved the capability of the PSI analysis for detecting high rates of deformation, as well as increased the numbers of point density of the final results. The proposed methodology showed good results for monitoring surface displacement in a large mining area, which is located in a rain forest environment, providing very useful information about the ground movement for planning and risk control.

Monitoring of surface movement in a large area of the open pit iron mines (Carajás, Brazil) based on A-DInSAR techniques using TerraSAR-X data

NASA Astrophysics Data System (ADS)

Mura, José C.; Paradella, Waldir R.; Gama, Fabio F.; Silva, Guilherme G.

2016-10-01

PSI (Persistent Scatterer Interferometry) analysis of large area is always a challenging task regarding the removal of the atmospheric phase component. This work presents an investigation of ground deformation measurements based on a combination of DInSAR Time-Series (DTS) and PSI techniques, applied in a large area of open pit iron mines located in Carajás (Brazilian Amazon Region), aiming at detect high rates of linear and nonlinear ground deformation. These mines have presented a historical of instability and surface monitoring measurements over sectors of the mines (pit walls) have been carried out based on ground based radar and total station (prisms). By using a priori information regarding the topographic phase error and phase displacement model derived from DTS, temporal phase unwrapping in the PSI processing and the removal of the atmospheric phases can be performed more efficiently. A set of 33 TerraSAR-X-1 images, acquired during the period from March 2012 to April 2013, was used to perform this investigation. The DTS analysis was carried out on a stack of multi-look unwrapped interferogram using an extension of SVD to obtain the Least-Square solution. The height errors and deformation rates provided by the DTS approach were subtracted from the stack of interferogram to perform the PSI analysis. This procedure improved the capability of the PSI analysis to detect high rates of deformation as well as increased the numbers of point density of the final results. The proposed methodology showed good results for monitoring surface displacement in a large mining area, which is located in a rain forest environment, providing very useful information about the ground movement for planning and risks control.

NASADEM Initial Production Processing Results: Shuttle Radar Topography Mission (SRTM) Reprocessing with Improvements

NASA Astrophysics Data System (ADS)

Buckley, S.; Agram, P. S.; Belz, J. E.; Crippen, R. E.; Gurrola, E. M.; Hensley, S.; Kobrick, M.; Lavalle, M.; Martin, J. M.; Neumann, M.; Nguyen, Q.; Rosen, P. A.; Shimada, J.; Simard, M.; Tung, W.

2016-12-01

NASADEM is a significant modernization of SRTM digital elevation model (DEM) data supported by the NASA MEaSUREs program. We are reprocessing the raw radar signal data using improved algorithms and incorporating ICESat and DEM data unavailable during the original processing. The NASADEM products will be freely-available through the Land Processes Distributed Active Archive Center (LPDAAC) at one-arcsecond spacing and delivered by continent: North America, South America, Australia, Eurasia, Africa, and Island Groups. We are in the production phase of the project. This involves radar interferometry (InSAR) processing on thousands of radar datatakes. New phase unwrapping and height ripple error correction (HREC) procedures are applied to the data. The resulting strip DEMs and ancillary information are passed to a back-end processor to create DEM mosaics and new geocoded single-swath products. Manual data quality assessment (QA) and fixes are performed at several steps in the processing chain. Post-production DEM void-filling is described in a companion AGU Fall Meeting presentation. The team completed the InSAR processing for all continents and the manual QA of the strip DEMs for more than half the world. North America strip DEM void areas are reduced by more than 50%. The ICESat data is used for height ripple error correction and as control for continent-scale adjustment of the strip DEMs. These ripples are due to uncompensated mast motion most pronounced after Shuttle roll angle adjustment maneuvers. After an initial assessment of the NASADEM production processing for the Americas, we further refined the selection of ICESat data for control by excluded data over glaciers, snow cover, forest clear cuts, and sloped areas. The HREC algorithm reduces the North America ICESat-SRTM bias from 80 cm to 3 cm and the RMS from 5m to 4m.

Contribution of DNA unwrapping from histone octamers to the repair of oxidatively damaged DNA in nucleosomes

PubMed Central

Maher, Robyn L.; Prasad, Amalthiya; Rizvanova, Olga; Wallace, Susan S.; Pederson, David S.

2013-01-01

Reactive oxygen species generate ~20,000 oxidative lesions in the DNA of every cell, every day. Most of these lesions are located within nucleosomes, which package DNA in chromatin and impede base excision repair (BER). We demonstrated previously that periodic, spontaneous partial unwrapping of DNA from the underlying histone octamer enables BER enzymes to bind to oxidative lesions that would otherwise be sterically inaccessible. In the present study, we asked if these periodic DNA unwrapping events are frequent enough to account for the estimated rates of BER in vivo. We measured rates of excision of oxidative lesions from sites in nucleosomes that are accessible only during unwrapping episodes. Using reaction conditions appropriate for presteady-state kinetic analyses, we derived lesion exposure rates for both 601 and 5S rDNA-based nucleosomes. Although DNA unwrapping-mediated exposure of a lesion ~16 NT from the nucleosome edge occurred ~7–8 times per minute, exposure rates fell dramatically for lesions located 10 or more NT further in from the nucleosome edge. The rates likely are too low to account for observed rates of BER in cells. Thus, chromatin remodeling, either BER-specific or that associated with transcription, replication, or other DNA repair processes, probably contributes to efficient BER in vivo. PMID:24051050

Self-marking phase-stepping electronic speckle pattern interfometry (ESPI) for 3D displacement measurement on cathode ray tube (CRT)-panels

NASA Astrophysics Data System (ADS)

Huang, M. J.; Liu, Zhao-Cheng; Jhang, Jhen-Huei

2002-11-01

This study demonstrates the feasibility of applying phase-shifting electronic speckle pattern interfometry to measure the deformation field of the front panel of a cathode ray tube, to support analysis to enhance the implosion-resistance capacity under violent collapse. Two effects, the air exhaustion and shrink band constraint effects, are comprehensively investigated. The angle of an adjustable mirror is switched, to provide three sensitivity vectors that are required in 3D-displacement measurement. A Fourier filtration is employed to remove speckle noise and establish a noise-free phase map. Inconsistent points are identified and masked to prevent any possible divergence during phase unwrapping. The results show that the accuracy of this method is satisfactory.

Department of Clinical Investigation Annual Research Progress Report.

DTIC Science & Technology

1995-09-30

20th Annual Uniformed Services Fractures ?. Academy of Family Physicians, San Diego, USA, April 95. DeWeber K Factors Associated With Physicians’s USAFP...Resonance Mammography (MRM): A Promising 313 #94/159 Application for Fat Suppression by Phase Unwrapping in the 3-Point-Dixon Method Makuch RS 0...Isotonic Saline, Purified Water, and 378 #95/082 Dilute Hypochlorite Solution on the Rates of Infection and Tissue Response in Open Fractures of a

Interference Confocal Microscope Integrated with Spatial Phase Shifter.

PubMed

Wang, Weibo; Gu, Kang; You, Xiaoyu; Tan, Jiubin; Liu, Jian

2016-08-24

We present an interference confocal microscope (ICM) with a new single-body four-step simultaneous phase-shifter device designed to obtain high immunity to vibration. The proposed ICM combines the respective advantages of simultaneous phase shifting interferometry and bipolar differential confocal microscopy to obtain high axis resolution, large dynamic range, and reduce the sensitivity to vibration and reflectance disturbance seamlessly. A compact single body spatial phase shifter is added to capture four phase-shifted interference signals simultaneously without time delay and construct a stable and space-saving simplified interference confocal microscope system. The test result can be obtained by combining the interference phase response and the bipolar property of differential confocal microscopy without phase unwrapping. Experiments prove that the proposed microscope is capable of providing stable measurements with 1 nm of axial depth resolution for either low- or high-numerical aperture objective lenses.

Identification of superficial defects in reconstructed 3D objects using phase-shifting fringe projection

NASA Astrophysics Data System (ADS)

Madrigal, Carlos A.; Restrepo, Alejandro; Branch, John W.

2016-09-01

3D reconstruction of small objects is used in applications of surface analysis, forensic analysis and tissue reconstruction in medicine. In this paper, we propose a strategy for the 3D reconstruction of small objects and the identification of some superficial defects. We applied a technique of projection of structured light patterns, specifically sinusoidal fringes and an algorithm of phase unwrapping. A CMOS camera was used to capture images and a DLP digital light projector for synchronous projection of the sinusoidal pattern onto the objects. We implemented a technique based on a 2D flat pattern as calibration process, so the intrinsic and extrinsic parameters of the camera and the DLP were defined. Experimental tests were performed in samples of artificial teeth, coal particles, welding defects and surfaces tested with Vickers indentation. Areas less than 5cm were studied. The objects were reconstructed in 3D with densities of about one million points per sample. In addition, the steps of 3D description, identification of primitive, training and classification were implemented to recognize defects, such as: holes, cracks, roughness textures and bumps. We found that pattern recognition strategies are useful, when quality supervision of surfaces has enough quantities of points to evaluate the defective region, because the identification of defects in small objects is a demanding activity of the visual inspection.

Micro Fourier Transform Profilometry (μFTP): 3D shape measurement at 10,000 frames per second

NASA Astrophysics Data System (ADS)

Zuo, Chao; Tao, Tianyang; Feng, Shijie; Huang, Lei; Asundi, Anand; Chen, Qian

2018-03-01

Fringe projection profilometry is a well-established technique for optical 3D shape measurement. However, in many applications, it is desirable to make 3D measurements at very high speed, especially with fast moving or shape changing objects. In this work, we demonstrate a new 3D dynamic imaging technique, Micro Fourier Transform Profilometry (μFTP), which can realize an acquisition rate up to 10,000 3D frame per second (fps). The high measurement speed is achieved by the number of patterns reduction as well as high-speed fringe projection hardware. In order to capture 3D information in such a short period of time, we focus on the improvement of the phase recovery, phase unwrapping, and error compensation algorithms, allowing to reconstruct an accurate, unambiguous, and distortion-free 3D point cloud with every two projected patterns. We also develop a high-frame-rate fringe projection hardware by pairing a high-speed camera and a DLP projector, enabling binary pattern switching and precisely synchronized image capture at a frame rate up to 20,000 fps. Based on this system, we demonstrate high-quality textured 3D imaging of 4 transient scenes: vibrating cantilevers, rotating fan blades, flying bullet, and bursting balloon, which were previously difficult or even unable to be captured with conventional approaches.

Micro Fourier Transform Profilometry (μFTP): 3D shape measurement at 10,000 frames per second

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zuo, Chao; Tao, Tianyang; Feng, Shijie

We report that fringe projection profilometry is a well-established technique for optical 3D shape measurement. However, in many applications, it is desirable to make 3D measurements at very high speed, especially with fast moving or shape changing objects. In this work, we demonstrate a new 3D dynamic imaging technique, Micro Fourier Transform Profilometry (μFTP), which can realize an acquisition rate up to 10,000 3D frame per second (fps). The high measurement speed is achieved by the number of patterns reduction as well as high-speed fringe projection hardware. In order to capture 3D information in such a short period of time,more » we focus on the improvement of the phase recovery, phase unwrapping, and error compensation algorithms, allowing to reconstruct an accurate, unambiguous, and distortion-free 3D point cloud with every two projected patterns. We also develop a high-frame-rate fringe projection hardware by pairing a high-speed camera and a DLP projector, enabling binary pattern switching and precisely synchronized image capture at a frame rate up to 20,000 fps. Lastly, based on this system, we demonstrate high-quality textured 3D imaging of 4 transient scenes: vibrating cantilevers, rotating fan blades, flying bullet, and bursting balloon, which were previously difficult or even unable to be captured with conventional approaches.« less

Micro Fourier Transform Profilometry (μFTP): 3D shape measurement at 10,000 frames per second

DOE PAGES

Zuo, Chao; Tao, Tianyang; Feng, Shijie; ...

2017-11-06

We report that fringe projection profilometry is a well-established technique for optical 3D shape measurement. However, in many applications, it is desirable to make 3D measurements at very high speed, especially with fast moving or shape changing objects. In this work, we demonstrate a new 3D dynamic imaging technique, Micro Fourier Transform Profilometry (μFTP), which can realize an acquisition rate up to 10,000 3D frame per second (fps). The high measurement speed is achieved by the number of patterns reduction as well as high-speed fringe projection hardware. In order to capture 3D information in such a short period of time,more » we focus on the improvement of the phase recovery, phase unwrapping, and error compensation algorithms, allowing to reconstruct an accurate, unambiguous, and distortion-free 3D point cloud with every two projected patterns. We also develop a high-frame-rate fringe projection hardware by pairing a high-speed camera and a DLP projector, enabling binary pattern switching and precisely synchronized image capture at a frame rate up to 20,000 fps. Lastly, based on this system, we demonstrate high-quality textured 3D imaging of 4 transient scenes: vibrating cantilevers, rotating fan blades, flying bullet, and bursting balloon, which were previously difficult or even unable to be captured with conventional approaches.« less

Constraining Seismic Structure of Upper-Mantle Discontinuities: A New Approach Using High-Frequency Triplication Data

NASA Astrophysics Data System (ADS)

Ishii, M.; Park, S.

2016-12-01

Constraining elastic properties of the 410- and 660-km discontinuities is crucial for understanding the mantle composition and dynamics. One approach to study the transition zone is to use the "triplicated" arrivals of seismic data. These arrivals consist of three seismic phases that are sensitive to seismic structure slightly above, at, and below the discontinuity. Thus, these data are powerful tools in providing constraints on the depth and velocity jump of the discontinuities with consequences for the studies of mantle composition and relevant phase transitions. One of the most challenging aspects of using the triplication data, however, is to identify the three individual phases that arrive close in time. In order to separate the three phases, we apply Radon transform to short-period seismograms recorded by a dense array of stations. This approach unwraps the triplication pattern, and brings out the high-frequency information that is not easily accessible in the original form of data. Subsequent modeling of the unwrapped data allows velocity jump, depth, and width of the discontinuities to be obtained. This method is applied to study the transition zone around the Kuril subduction zone, a region northeast of Japan. We take advantage of the High-Sensitivity Seismograph Network in Japan that consists of more than 700 stations. These stations provide dense sampling in distance that allows us to capture the triplication pattern. The wave speeds immediately above and below the 410- and 660-km discontinuities as well as their depths and widths are constrained. In general, both discontinuities are depressed compared to the global average, and exhibit finite widths. The width estimates have implications on effects such as the existence of water or melt, and garnet transformations occurring at similar depths as the post-spinel transition.

Multi-temporal InSAR analysis to reduce uncertainties and assess time-dependence of deformation in the northern Chilean forearc

NASA Astrophysics Data System (ADS)

Manjunath, D.; Gomez, F.; Loveless, J.

2005-12-01

Interferometric Synthetic Aperture Radar (InSAR) provides unprecedented spatial imaging of crustal deformation. However, for small deformations, such as those due to interseismic strain accumulation, potentially significant uncertainty may result from other sources of interferometric phase, such as atmospheric effects, errors in satellite baseline, and height errors in the reference digital elevation model (DEM). We aim to constrain spatial and temporal variations in crustal deformation of the northern Chilean forearc region of the Andean subduction zone (19° - 22°S) using multiple interferograms spanning 1995 - 2000. The study area includes the region of the 1995 Mw 8.1 Antofagasta earthquake and the region to the north. In contrast to previous InSAR-based studies of the Chilean forearc, we seek to distinguish interferometric phase contributions from linear and nonlinear deformation, height errors in the DEM, and atmospheric effects. Understanding these phase contributions reduces the uncertainties on the deformation rates and provides a view of the time-dependence of deformation. The inteferograms cover a 150 km-wide swath spanning two adjacent orbital tracks. Our study involves the analysis of more than 28 inteferograms along each track. Coherent interferograms in the hyper-arid Atacama Desert permit spatial phase unwrapping. Initial estimates of topographic phase were determined using 3'' DEM data from the SRTM mission. We perform a pixel-by-pixel analysis of the unwrapped phase to identify time- and baseline-dependent phase contributions, using the Gamma Remote Sensing radar software. Atmospheric phase, non-linear deformation, and phase noise were further distinguished using a combination of spatial and temporal filters. Non-linear deformation is evident for up to 2.5 years following the 1995 earthquake, followed by a return to time-linear, interseismic strain accumulation. The regional trend of linear deformation, characterized by coastal subsidence and relative uplift inland, is consistent with the displacement field expected for a locked subduction zone. Our improved determination of deformation rates is used to formulate a new elastic model of interseismic strain in the Chilean forearc.

Phase aberration compensation of digital holographic microscopy based on least squares surface fitting

NASA Astrophysics Data System (ADS)

Di, Jianglei; Zhao, Jianlin; Sun, Weiwei; Jiang, Hongzhen; Yan, Xiaobo

2009-10-01

Digital holographic microscopy allows the numerical reconstruction of the complex wavefront of samples, especially biological samples such as living cells. In digital holographic microscopy, a microscope objective is introduced to improve the transverse resolution of the sample; however a phase aberration in the object wavefront is also brought along, which will affect the phase distribution of the reconstructed image. We propose here a numerical method to compensate for the phase aberration of thin transparent objects with a single hologram. The least squares surface fitting with points number less than the matrix of the original hologram is performed on the unwrapped phase distribution to remove the unwanted wavefront curvature. The proposed method is demonstrated with the samples of the cicada wings and epidermal cells of garlic, and the experimental results are consistent with that of the double exposure method.

Brain functional BOLD perturbation modelling for forward fMRI and inverse mapping

PubMed Central

Robinson, Jennifer; Calhoun, Vince

2018-01-01

Purpose To computationally separate dynamic brain functional BOLD responses from static background in a brain functional activity for forward fMRI signal analysis and inverse mapping. Methods A brain functional activity is represented in terms of magnetic source by a perturbation model: χ = χ0 +δχ, with δχ for BOLD magnetic perturbations and χ0 for background. A brain fMRI experiment produces a timeseries of complex-valued images (T2* images), whereby we extract the BOLD phase signals (denoted by δP) by a complex division. By solving an inverse problem, we reconstruct the BOLD δχ dataset from the δP dataset, and the brain χ distribution from a (unwrapped) T2* phase image. Given a 4D dataset of task BOLD fMRI, we implement brain functional mapping by temporal correlation analysis. Results Through a high-field (7T) and high-resolution (0.5mm in plane) task fMRI experiment, we demonstrated in detail the BOLD perturbation model for fMRI phase signal separation (P + δP) and reconstructing intrinsic brain magnetic source (χ and δχ). We also provided to a low-field (3T) and low-resolution (2mm) task fMRI experiment in support of single-subject fMRI study. Our experiments show that the δχ-depicted functional map reveals bidirectional BOLD χ perturbations during the task performance. Conclusions The BOLD perturbation model allows us to separate fMRI phase signal (by complex division) and to perform inverse mapping for pure BOLD δχ reconstruction for intrinsic functional χ mapping. The full brain χ reconstruction (from unwrapped fMRI phase) provides a new brain tissue image that allows to scrutinize the brain tissue idiosyncrasy for the pure BOLD δχ response through an automatic function/structure co-localization. PMID:29351339

Analysis of Interferometric Synthetic Aperture Radar Phase Data at Brady Hot Springs, Nevada, USA Using Prior Information

NASA Astrophysics Data System (ADS)

Reinisch, E. C.; Ali, S. T.; Cardiff, M. A.; Morency, C.; Kreemer, C.; Feigl, K. L.; Team, P.

2016-12-01

Time-dependent deformation has been observed at Brady Hot Springs using interferometric synthetic aperture radar (InSAR) [Ali et al. 2016, http://dx.doi.org/10.1016/j.geothermics.2016.01.008]. Our goal is to evaluate multiple competing hypotheses to explain the observed deformation at Brady. To do so requires statistical tests that account for uncertainty. Graph theory is useful for such an analysis of InSAR data [Reinisch, et al. 2016, http://dx.doi.org/10.1007/s00190-016-0934-5]. In particular, the normalized edge Laplacian matrix calculated from the edge-vertex incidence matrix of the graph of the pair-wise data set represents its correlation and leads to a full data covariance matrix in the weighted least squares problem. This formulation also leads to the covariance matrix of the epoch-wise measurements, representing their relative uncertainties. While the formulation in terms of incidence graphs applies to any quantity derived from pair-wise differences, the modulo-2π ambiguity of wrapped phase renders the problem non-linear. The conventional practice is to unwrap InSAR phase before modeling, which can introduce mistakes without increasing the corresponding measurement uncertainty. To address this issue, we are applying Bayesian inference. To build the likelihood, we use three different observables: (a) wrapped phase [e.g., Feigl and Thurber 2009, http://dx.doi.org/10.1111/j.1365-246X.2008.03881.x]; (b) range gradients, as defined by Ali and Feigl [2012, http://dx.doi.org/10.1029/2012GC004112]; and (c) unwrapped phase, i.e. range change in mm, which we validate using GPS data. We apply our method to InSAR data taken over Brady Hot Springs geothermal field in Nevada as part of a project entitled "Poroelastic Tomography by Adjoint Inverse Modeling of Data from Seismology, Geodesy, and Hydrology" (PoroTomo) [ http://geoscience.wisc.edu/feigl/porotomo].

In vivo characterization of 3D skull and brain motion during dynamic head vibration using magnetic resonance elastography.

PubMed

Yin, Ziying; Sui, Yi; Trzasko, Joshua D; Rossman, Phillip J; Manduca, Armando; Ehman, Richard L; Huston, John

2018-05-17

To introduce newly developed MR elastography (MRE)-based dual-saturation imaging and dual-sensitivity motion encoding schemes to directly measure in vivo skull-brain motion, and to study the skull-brain coupling in volunteers with these approaches. Six volunteers were scanned with a high-performance compact 3T-MRI scanner. The skull-brain MRE images were obtained with a dual-saturation imaging where the skull and brain motion were acquired with fat- and water-suppression scans, respectively. A dual-sensitivity motion encoding scheme was applied to estimate the heavily wrapped phase in skull by the simultaneous acquisition of both low- and high-sensitivity phase during a single MRE exam. The low-sensitivity phase was used to guide unwrapping of the high-sensitivity phase. The amplitude and temporal phase delay of the rigid-body motion between the skull and brain was measured, and the skull-brain interface was visualized by slip interface imaging (SII). Both skull and brain motion can be successfully acquired and unwrapped. The skull-brain motion analysis demonstrated the motion transmission from the skull to the brain is attenuated in amplitude and delayed. However, this attenuation (%) and delay (rad) were considerably greater with rotation (59 ± 7%, 0.68 ± 0.14 rad) than with translation (92 ± 5%, 0.04 ± 0.02 rad). With SII the skull-brain slip interface was not completely evident, and the slip pattern was spatially heterogeneous. This study provides a framework for acquiring in vivo voxel-based skull and brain displacement using MRE that can be used to characterize the skull-brain coupling system for understanding of mechanical brain protection mechanisms, which has potential to facilitate risk management for future injury. © 2018 International Society for Magnetic Resonance in Medicine.

Dual tree fractional quaternion wavelet transform for disparity estimation.

PubMed

Kumar, Sanoj; Kumar, Sanjeev; Sukavanam, Nagarajan; Raman, Balasubramanian

2014-03-01

This paper proposes a novel phase based approach for computing disparity as the optical flow from the given pair of consecutive images. A new dual tree fractional quaternion wavelet transform (FrQWT) is proposed by defining the 2D Fourier spectrum upto a single quadrant. In the proposed FrQWT, each quaternion wavelet consists of a real part (a real DWT wavelet) and three imaginary parts that are organized according to the quaternion algebra. First two FrQWT phases encode the shifts of image features in the absolute horizontal and vertical coordinate system, while the third phase has the texture information. The FrQWT allowed a multi-scale framework for calculating and adjusting local disparities and executing phase unwrapping from coarse to fine scales with linear computational efficiency. Copyright © 2013 ISA. Published by Elsevier Ltd. All rights reserved.

Histone Core Phosphorylation Regulates DNA Accessibility*

PubMed Central

Brehove, Matthew; Wang, Tao; North, Justin; Luo, Yi; Dreher, Sarah J.; Shimko, John C.; Ottesen, Jennifer J.; Luger, Karolin; Poirier, Michael G.

2015-01-01

Nucleosome unwrapping dynamics provide transient access to the complexes involved in DNA transcription, repair, and replication, whereas regulation of nucleosome unwrapping modulates occupancy of these complexes. Histone H3 is phosphorylated at tyrosine 41 (H3Y41ph) and threonine 45 (H3T45ph). H3Y41ph is implicated in regulating transcription, whereas H3T45ph is involved in DNA replication and apoptosis. These modifications are located in the DNA-histone interface near where the DNA exits the nucleosome, and are thus poised to disrupt DNA-histone interactions. However, the impact of histone phosphorylation on nucleosome unwrapping and accessibility is unknown. We find that the phosphorylation mimics H3Y41E and H3T45E, and the chemically correct modification, H3Y41ph, significantly increase nucleosome unwrapping. This enhances DNA accessibility to protein binding by 3-fold. H3K56 acetylation (H3K56ac) is also located in the same DNA-histone interface and increases DNA unwrapping. H3K56ac is implicated in transcription regulation, suggesting that H3Y41ph and H3K56ac could function together. We find that the combination of H3Y41ph with H3K56ac increases DNA accessibility by over an order of magnitude. These results suggest that phosphorylation within the nucleosome DNA entry-exit region increases access to DNA binding complexes and that the combination of phosphorylation with acetylation has the potential to significantly influence DNA accessibility to transcription regulatory complexes. PMID:26175159

A class of solution-invariant transformations of cost functions for minimum cost flow phase unwrapping.

PubMed

Hubig, Michael; Suchandt, Steffen; Adam, Nico

2004-10-01

Phase unwrapping (PU) represents an important step in synthetic aperture radar interferometry (InSAR) and other interferometric applications. Among the different PU methods, the so called branch-cut approaches play an important role. In 1996 M. Costantini [Proceedings of the Fringe '96 Workshop ERS SAR Interferometry (European Space Agency, Munich, 1996), pp. 261-272] proposed to transform the problem of correctly placing branch cuts into a minimum cost flow (MCF) problem. The crucial point of this new approach is to generate cost functions that represent the a priori knowledge necessary for PU. Since cost functions are derived from measured data, they are random variables. This leads to the question of MCF solution stability: How much can the cost functions be varied without changing the cheapest flow that represents the correct branch cuts? This question is partially answered: The existence of a whole linear subspace in the space of cost functions is shown; this subspace contains all cost differences by which a cost function can be changed without changing the cost difference between any two flows that are discharging any residue configuration. These cost differences are called strictly stable cost differences. For quadrangular nonclosed networks (the most important type of MCF networks for interferometric purposes) a complete classification of strictly stable cost differences is presented. Further, the role of the well-known class of node potentials in the framework of strictly stable cost differences is investigated, and information on the vector-space structure representing the MCF environment is provided.

Simultaneous estimation of multiple phases in digital holographic interferometry using state space analysis

NASA Astrophysics Data System (ADS)

Kulkarni, Rishikesh; Rastogi, Pramod

2018-05-01

A new approach is proposed for the multiple phase estimation from a multicomponent exponential phase signal recorded in multi-beam digital holographic interferometry. It is capable of providing multidimensional measurements in a simultaneous manner from a single recording of the exponential phase signal encoding multiple phases. Each phase within a small window around each pixel is appproximated with a first order polynomial function of spatial coordinates. The problem of accurate estimation of polynomial coefficients, and in turn the unwrapped phases, is formulated as a state space analysis wherein the coefficients and signal amplitudes are set as the elements of a state vector. The state estimation is performed using the extended Kalman filter. An amplitude discrimination criterion is utilized in order to unambiguously estimate the coefficients associated with the individual signal components. The performance of proposed method is stable over a wide range of the ratio of signal amplitudes. The pixelwise phase estimation approach of the proposed method allows it to handle the fringe patterns that may contain invalid regions.

Optoelectronic imaging of speckle using image processing method

NASA Astrophysics Data System (ADS)

Wang, Jinjiang; Wang, Pengfei

2018-01-01

A detailed image processing of laser speckle interferometry is proposed as an example for the course of postgraduate student. Several image processing methods were used together for dealing with optoelectronic imaging system, such as the partial differential equations (PDEs) are used to reduce the effect of noise, the thresholding segmentation also based on heat equation with PDEs, the central line is extracted based on image skeleton, and the branch is removed automatically, the phase level is calculated by spline interpolation method, and the fringe phase can be unwrapped. Finally, the imaging processing method was used to automatically measure the bubble in rubber with negative pressure which could be used in the tire detection.

Least Squares Solution of Small Sample Multiple-Master PSInSAR System

NASA Astrophysics Data System (ADS)

Zhang, Lei; Ding, Xiao Li; Lu, Zhong

2010-03-01

In this paper we propose a least squares based approach for multi-temporal SAR interferometry that allows to estimate the deformation rate with no need of phase unwrapping. The approach utilizes a series of multi-master wrapped differential interferograms with short baselines and only focuses on the arcs constructed by two nearby points at which there are no phase ambiguities. During the estimation an outlier detector is used to identify and remove the arcs with phase ambiguities, and pseudoinverse of priori variance component matrix is taken as the weight of correlated observations in the model. The parameters at points can be obtained by an indirect adjustment model with constraints when several reference points are available. The proposed approach is verified by a set of simulated data.

Unwrapping an Ancient Egyptian Mummy Using X-Rays

ERIC Educational Resources Information Center

Hughes, Stephen W.

2010-01-01

This article describes a project of unwrapping an ancient Egyptian mummy using x-ray computed tomography (CT). About 600 x-ray CT images were obtained through the mummified body of a female named Tjetmutjengebtiu (or Jeni for short), who was a singer in the great temple of Karnak in Egypt during the 22nd dynasty (c 945-715 BC). The x-ray CT images…

Optimized phase gradient measurements and phase-amplitude interplay in optical coherence elastography

NASA Astrophysics Data System (ADS)

Zaitsev, Vladimir Y.; Matveyev, Alexander L.; Matveev, Lev A.; Gelikonov, Grigory V.; Sovetsky, Aleksandr A.; Vitkin, Alex

2016-11-01

In compressional optical coherence elastography, phase-variation gradients are used for estimating quasistatic strains created in tissue. Using reference and deformed optical coherence tomography (OCT) scans, one typically compares phases from pixels with the same coordinates in both scans. Usually, this limits the allowable strains to fairly small values < to 10-3, with the caveat that such weak phase gradients may become corrupted by stronger measurement noises. Here, we extend the OCT phase-resolved elastographic methodology by (1) showing that an order of magnitude greater strains can significantly increase the accuracy of derived phase-gradient differences, while also avoiding error-phone phase-unwrapping procedures and minimizing the influence of decorrelation noise caused by suprapixel displacements, (2) discussing the appearance of artifactual stiff inclusions in resultant OCT elastograms in the vicinity of bright scatterers due to the amplitude-phase interplay in phase-variation measurements, and (3) deriving/evaluating methods of phase-gradient estimation that can outperform conventionally used least-square gradient fitting. We present analytical arguments, numerical simulations, and experimental examples to demonstrate the advantages of the proposed optimized phase-variation methodology.

Fringe chasing by three-point spatial phase shifting for discrimination of the motion direction in the long-range homodyne laser Doppler vibrometry

NASA Astrophysics Data System (ADS)

Daemi, Mohammad Hossein; Rasouli, Saifollah

2018-07-01

In this work, a three-point spatial phase shifting (SPS) method is implemented for chasing of the moving interference fringes in the homodyne laser Doppler vibrometry (HoLDV). By the use of SPS method, we remove disability of the HoLDV in the discrimination of the motion direction for long-range displacements. From the phase increments histogram, phase unwrapping tolerance value is selected, and adequacy of the data acquisition rate and required bandwidth limit are determined. Also in this paper, a detailed investigation on the effect of detectors positioning errors and influence of the Gaussian profile of the interfering beams on the measurements are presented. Performance of the method is verified by measuring a given harmonic vibration produced by a loudspeaker. Also, by the proposed method, vibration of mounting system of a disk laser gain medium is characterized.

High-speed transport-of-intensity phase microscopy with an electrically tunable lens.

PubMed

Zuo, Chao; Chen, Qian; Qu, Weijuan; Asundi, Anand

2013-10-07

We present a high-speed transport-of-intensity equation (TIE) quantitative phase microscopy technique, named TL-TIE, by combining an electrically tunable lens with a conventional transmission microscope. This permits the specimen at different focus position to be imaged in rapid succession, with constant magnification and no physically moving parts. The simplified image stack collection significantly reduces the acquisition time, allows for the diffraction-limited through-focus intensity stack collection at 15 frames per second, making dynamic TIE phase imaging possible. The technique is demonstrated by profiling of microlens array using optimal frequency selection scheme, and time-lapse imaging of live breast cancer cells by inversion the defocused phase optical transfer function to correct the phase blurring in traditional TIE. Experimental results illustrate its outstanding capability of the technique for quantitative phase imaging, through a simple, non-interferometric, high-speed, high-resolution, and unwrapping-free approach with prosperous applications in micro-optics, life sciences and bio-photonics.

Layover and shadow detection based on distributed spaceborne single-baseline InSAR

NASA Astrophysics Data System (ADS)

Huanxin, Zou; Bin, Cai; Changzhou, Fan; Yun, Ren

2014-03-01

Distributed spaceborne single-baseline InSAR is an effective technique to get high quality Digital Elevation Model. Layover and Shadow are ubiquitous phenomenon in SAR images because of geometric relation of SAR imaging. In the signal processing of single-baseline InSAR, the phase singularity of Layover and Shadow leads to the phase difficult to filtering and unwrapping. This paper analyzed the geometric and signal model of the Layover and Shadow fields. Based on the interferometric signal autocorrelation matrix, the paper proposed the signal number estimation method based on information theoretic criteria, to distinguish Layover and Shadow from normal InSAR fields. The effectiveness and practicability of the method proposed in the paper are validated in the simulation experiments and theoretical analysis.

49 CFR 40.63 - What steps does the collector take in the collection process before the employee provides a urine...

Code of Federal Regulations, 2010 CFR

2010-10-01

.... Either you or the employee, with both of you present, must unwrap or break the seal of the collection container. You must not unwrap or break the seal on any specimen bottle at this time. You must not allow the... direct observation and the reason for doing so. [65 FR 79526, Dec. 19, 2000, as amended at 75 FR 59107...

Signal analysis and radioholographic methods for airborne radio occultations

NASA Astrophysics Data System (ADS)

Wang, Kuo-Nung

Global Positioning System (GPS) radio occultation (RO) is an atmospheric sounding technique utilizing the change in propagation direction and delay of the GPS signal to measure refractivity, which provides information on temperature and humidity. The GPS-RO technique is now operational on several Low Earth Orbiting (LEO) satellite missions. Nevertheless, when observing localized transient events, such as tropical storms, current LEO satellite systems cannot provide sufficiently high temporal and spatial resolution soundings. An airborne RO (ARO) system has therefore been developed for localized GPS-RO campaigns. The open-loop (OL) tracking in post-processing is used to cross-correlates the received Global Navigation Satellite System (GNSS) signal with an internally generated local carrier signal predicted from a Doppler model and extract the atmospheric refractivity information. OL tracking also allows robust processing of rising GPS signals using backward tracking, which will double the observed occultation event numbers. RO signals in the lower troposphere are adversely affected by rapid phase accelerations and severe signal power fading, however. The negative bias caused by low signal-to-noise ratio (SNR) and multipath ray propagation limits the depth of tracking in the atmosphere. Therefore, we developed a model relating the SNR to the variance in the residual phase of the observed signal produced from OL tracking, and its applicability to airborne data is demonstrated. We then apply this model to set a threshold on refractivity retrieval, based upon the cumulative unwrapping error bias, to determine the altitude limit for reliable signal tracking. To enhance the SNR and decrease the unwrapping error rate, the CIRA-Q climatological model and signal residual phase pre-filtering are utilized to process the ARO residual phase. This more accurately modeled phase and less noisy received signal are shown to greatly reduce the bias caused by unwrapping error at lower altitude. On the other hand, to process the superimposed signal in the lower troposphere with its highly variable moisture distribution, Radio-Holographic (RH) methods such as Phase Matching (PM) have been adapted for ARO platforms to untangle the bending angle of each signal path. Under the assumption of spherically symmetric atmosphere, ARO PM can identify different subsignals using the Method of the Stationary Phase (MSP) and determine the arrival angle for each impact parameter. As a result, each subsignal can be distinguished and its corresponding bending angle can be retrieved without producing a negative bias. The refractivity retrieval results using ARO PM are compared to those using the traditional Geometrical Optics (GO) method. The improvements are shown and discussed in the dissertation. We applied these new methods to the received ARO data collected by the GNSS instrument system for multistatic and occultation sensing (GISMOS) in the 2010 PREDepression Investigation of Cloud systems (PREDICT) campaign. A data set of 5 research flights with 57 occultation events during the formation stage of the Hurricane Karl are processed and analyzed. In this research, the refractivity fractional difference with ERA-I model can be maintained at an average 2% above a height of 2km with a climatological model and ARO PM. Compared to the traditional geometrical optics (GO) method without climatological method assistance, the new ARO processing can effectively decrease the refractivity negative bias and significantly improve the retrieval depth of ARO.

Improved Goldstein Interferogram Filter Based on Local Fringe Frequency Estimation.

PubMed

Feng, Qingqing; Xu, Huaping; Wu, Zhefeng; You, Yanan; Liu, Wei; Ge, Shiqi

2016-11-23

The quality of an interferogram, which is limited by various phase noise, will greatly affect the further processes of InSAR, such as phase unwrapping. Interferometric SAR (InSAR) geophysical measurements', such as height or displacement, phase filtering is therefore an essential step. In this work, an improved Goldstein interferogram filter is proposed to suppress the phase noise while preserving the fringe edges. First, the proposed adaptive filter step, performed before frequency estimation, is employed to improve the estimation accuracy. Subsequently, to preserve the fringe characteristics, the estimated fringe frequency in each fixed filtering patch is removed from the original noisy phase. Then, the residual phase is smoothed based on the modified Goldstein filter with its parameter alpha dependent on both the coherence map and the residual phase frequency. Finally, the filtered residual phase and the removed fringe frequency are combined to generate the filtered interferogram, with the loss of signal minimized while reducing the noise level. The effectiveness of the proposed method is verified by experimental results based on both simulated and real data.

Improved Goldstein Interferogram Filter Based on Local Fringe Frequency Estimation

PubMed Central

Feng, Qingqing; Xu, Huaping; Wu, Zhefeng; You, Yanan; Liu, Wei; Ge, Shiqi

2016-01-01

The quality of an interferogram, which is limited by various phase noise, will greatly affect the further processes of InSAR, such as phase unwrapping. Interferometric SAR (InSAR) geophysical measurements’, such as height or displacement, phase filtering is therefore an essential step. In this work, an improved Goldstein interferogram filter is proposed to suppress the phase noise while preserving the fringe edges. First, the proposed adaptive filter step, performed before frequency estimation, is employed to improve the estimation accuracy. Subsequently, to preserve the fringe characteristics, the estimated fringe frequency in each fixed filtering patch is removed from the original noisy phase. Then, the residual phase is smoothed based on the modified Goldstein filter with its parameter alpha dependent on both the coherence map and the residual phase frequency. Finally, the filtered residual phase and the removed fringe frequency are combined to generate the filtered interferogram, with the loss of signal minimized while reducing the noise level. The effectiveness of the proposed method is verified by experimental results based on both simulated and real data. PMID:27886081

Integration of ERS and ASAR Time Series for Differential Interferometric SAR Analysis

NASA Astrophysics Data System (ADS)

Werner, C. L.; Wegmüller, U.; Strozzi, T.; Wiesmann, A.

2005-12-01

Time series SAR interferometric analysis requires SAR data with good temporal sampling covering the time period of interest. The ERS satellites operated by ESA have acquired a large global archive of C-Band SAR data since 1991. The ASAR C-Band instrument aboard the ENVISAT platform launched in 2002 operates in the same orbit as ERS-1 and ERS-2 and has largely replaced the remaining operational ERS-2 satellite. However, interferometry between data acquired by ERS and ASAR is complicated by a 31 MHz offset in the radar center frequency between the instruments leading to decorrelation over distributed targets. Only in rare instances, when the baseline exceeds 1 km, can the spectral shift compensate for the difference in the frequencies of the SAR instruments to produce visible fringes. Conversely, point targets do not decorrelate due to the frequency offset making it possible to incorporate the ERS-ASAR phase information and obtain improved temporal coverage. We present an algorithm for interferometric point target analysis that integrates ERS-ERS, ASAR-ASAR and ERS-ASAR data. Initial analysis using the ERS-ERS data is used to identify the phase stable point-like scatterers within the scene. Height corrections relative to the initial DEM are derived by regression of the residual interferometric phases with respect to perpendicular baseline for a set of ERS-ERS interferograms. The ASAR images are coregistered with the ERS scenes and the point phase values are extracted. The different system pixel spacing values between ERS and ASAR requires additional refinement in the offset estimation and resampling procedure. Calculation of the ERS-ASAR simulated phase used to derive the differential interferometric phase must take into account the slightly different carrrier frequencies. Differential ERS-ASAR point phases contain an additional phase component related to the scatterer location within the resolution element. This additional phase varies over several cycles making the differential interferogram appear as uniform phase noise. We present how this point phase difference can be determined and used to correct the ERS-ASAR interferograms. Further processing proceeds as with standard ERS-ERS interferogram stacks utilizing the unwrapped point phases to obtain estimates of the deformation history, and path delay due to variations in tropospheric water vapor. We show and discuss examples demonstrating the success of this approach.

Nomarski imaging interferometry to measure the displacement field of micro-electro-mechanical systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Amiot, Fabien; Roger, Jean Paul

2006-10-20

We propose to use a Nomarski imaging interferometer to measure the out-of-plane displacement field of micro-electro-mechanical systems. It is shown that the measured optical phase arises from both height and slope gradients. By using four integrating buckets, a more efficient approach to unwrap the measured phase is presented,thus making the method well suited for highly curved objects. Slope and height effects are then decoupled by expanding the displacement field on a functions basis, and the inverse transformation is applied to get a displacement field from a measured optical phase map change with a mechanical loading. A measurement reproducibility of approximatelymore » 10 pm is achieved, and typical results are shown on a microcantilever under thermal actuation, thereby proving the ability of such a setup to provide a reliable full-field kinematic measurement without surface modification.« less

Urban DEM generation, analysis and enhancements using TanDEM-X

NASA Astrophysics Data System (ADS)

Rossi, Cristian; Gernhardt, Stefan

2013-11-01

This paper analyzes the potential of the TanDEM-X mission for the generation of urban Digital Elevation Models (DEMs). The high resolution of the sensors and the absence of temporal decorrelation are exploited. The interferometric chain and the problems encountered for correct mapping of urban areas are analyzed first. The operational Integrated TanDEM-X Processor (ITP) algorithms are taken as reference. The ITP main product is called the raw DEM. Whereas the ITP coregistration stage is demonstrated to be robust enough, large improvements in the raw DEM such as fewer percentages of phase unwrapping errors, can be obtained by using adaptive fringe filters instead of the conventional ones in the interferogram generation stage. The shape of the raw DEM in the layover area is also shown and determined to be regular for buildings with vertical walls. Generally, in the presence of layover, the raw DEM exhibits a height ramp, resulting in a height underestimation for the affected structure. Examples provided confirm the theoretical background. The focus is centered on high resolution DEMs produced using spotlight acquisitions. In particular, a raw DEM over Berlin (Germany) with a 2.5 m raster is generated and validated. For this purpose, ITP is modified in its interferogram generation stage by adopting the Intensity Driven Adaptive Neighbourhood (IDAN) algorithm. The height Root Mean Square Error (RMSE) between the raw DEM and a reference is about 8 m for the two classes defining the urban DEM: structures and non-structures. The result can be further improved for the structure class using a DEM generated with Persistent Scatterer Interferometry. A DEM fusion is thus proposed and a drop of about 20% in the RMSE is reported.

Refining the shallow slip deficit

NASA Astrophysics Data System (ADS)

Xu, Xiaohua; Tong, Xiaopeng; Sandwell, David T.; Milliner, Christopher W. D.; Dolan, James F.; Hollingsworth, James; Leprince, Sebastien; Ayoub, Francois

2016-03-01

Geodetic slip inversions for three major (Mw > 7) strike-slip earthquakes (1992 Landers, 1999 Hector Mine and 2010 El Mayor-Cucapah) show a 15-60 per cent reduction in slip near the surface (depth < 2 km) relative to the slip at deeper depths (4-6 km). This significant difference between surface coseismic slip and slip at depth has been termed the shallow slip deficit (SSD). The large magnitude of this deficit has been an enigma since it cannot be explained by shallow creep during the interseismic period or by triggered slip from nearby earthquakes. One potential explanation for the SSD is that the previous geodetic inversions lack data coverage close to surface rupture such that the shallow portions of the slip models are poorly resolved and generally underestimated. In this study, we improve the static coseismic slip inversion for these three earthquakes, especially at shallow depths, by: (1) including data capturing the near-fault deformation from optical imagery and SAR azimuth offsets; (2) refining the interferometric synthetic aperture radar processing with non-boxcar phase filtering, model-dependent range corrections, more complete phase unwrapping by SNAPHU (Statistical Non-linear Approach for Phase Unwrapping) assuming a maximum discontinuity and an on-fault correlation mask; (3) using more detailed, geologically constrained fault geometries and (4) incorporating additional campaign global positioning system (GPS) data. The refined slip models result in much smaller SSDs of 3-19 per cent. We suspect that the remaining minor SSD for these earthquakes likely reflects a combination of our elastic model's inability to fully account for near-surface deformation, which will render our estimates of shallow slip minima, and potentially small amounts of interseismic fault creep or triggered slip, which could `make up' a small percentages of the coseismic SSD during the interseismic period. Our results indicate that it is imperative that slip inversions include accurate measurements of near-fault surface deformation to reliably constrain spatial patterns of slip during major strike-slip earthquakes.

Recent advances in time series InSAR

NASA Astrophysics Data System (ADS)

Hooper, Andrew; Bekaert, David; Spaans, Karsten

2010-05-01

Despite the multiple successes of InSAR at measuring surface displacement, in many instances the signal over much of an image either decorrelates too quickly to be useful or is swamped by atmospheric noise. Time series InSAR methods seek to address these issues by essentially increasing the signal-to-noise ratio (SNR) through the use of more data. These techniques are particularly useful for applications where the strain rates detected at the surface are low, such as postseismic/interseismic motion, magma/fluid movement, landslides and reservoir exploitation. Our previous developments in this field have included a persistent scatterer algorithm based on spatial correlation, a full resolution small baseline approach based on the same strategy, and procedure for combining the two [Hooper, GRL, 2008]. This combined method works well on small areas (up to one frame) at ERS or Envisat strip-map resolution. However, in applying it to larger areas, such as the Guerrero region of Mexico and western Anatolia in Turkey, or when processing data at higher resolution, e.g. from TerraSAR-X, computer resource problems can arise. We have therefore altered the processing strategy to involve smarter use of computer memory. Further improvement is achieved by the resampling of the selected pixels (whether persistent scatterers or distributed scatterers) to a coarser resolution - usually we do not require a resolution on the scale of individual resolution cells for geophysical applications. Aliasing is avoided by summing the phase of nearby selected pixels, weighted according to their estimated SNR. This is akin to smart multilooking, but note that better results can be achieved than by starting the analysis with low-resolution (multilooked) data. Another development concerns selecting pixels only in images where they appear reliable. This allows for resolution cells that become correlated/decorrelated either in a temporary fashion, e.g., due to snow cover, or in a permanent way due to the appearance or removal of scatterers. The detection algorithm relies on the degree of spatial correlation for the pixel of interest in each image. We have also modified our 3-D phase-unwrapping algorithms to allow for the resulting differing combinations of coherent pixels in every interferogram. We demonstrate our improved techniques on volcanoes in Iceland and the 2006 slow-slip event in Guerrero, Mexico.

Velocity interferometer signal de-noising using modified Wiener filter

NASA Astrophysics Data System (ADS)

Rav, Amit; Joshi, K. D.; Roy, Kallol; Kaushik, T. C.

2017-05-01

The accuracy and precision of the non-contact velocity interferometer system for any reflector (VISAR) depends not only on the good optical design and linear optical-to- electrical conversion system, but also on accurate and robust post-processing techniques. The performance of these techniques, such as the phase unwrapping algorithm, depends on the signal-to-noise ratio (SNR) of the recorded signal. In the present work, a novel method of improving the SNR of the recorded VISAR signal, based on the knowledge of the noise characteristic of the signal conversion and recording system, is presented. The proposed method uses a modified Wiener filter, for which the signal power spectrum estimation is obtained using a spectral subtraction method (SSM), and the noise power spectrum estimation is obtained by taking the average of the recorded signal during the period when no target movement is expected. Since the noise power spectrum estimate is dynamic in nature, and obtained for each experimental record individually, the improved signal quality is high. The proposed method is applied to the simulated standard signals, and is not only found to be better than the SSM, but is also less sensitive to the selection of the noise floor during signal power spectrum estimation. Finally, the proposed method is applied to the recorded experimental signal and an improvement in the SNR is reported.

Land Subsidence Monitoring by InSAR Time Series Technique Derived From ALOS-2 PALSAR-2 over Surabaya City, Indonesia

NASA Astrophysics Data System (ADS)

Aditiya, A.; Takeuchi, W.; Aoki, Y.

2017-12-01

Surabaya is the second largest city in Indonesia and the capital of East Java Province with rapid population and industrialization. The impact of urbanization in the big city can suffer potential disasters either nature or anthropogenic such as land subsidence and flood. The pattern of land subsidence need to be mapped for the purposes of planning and structuring the city as well as taking appropriate policy in anticipating and mitigating the impact. This research has used interferometric Synthetic Aperture Radar (InSAR) Small Baseline Subset (SBAS) technique and applied time series analysis to investigate land subsidence occured. The technique includes the process of focusing the SAR data, incorporating the precise orbit, generating interferogram and phase unwrapping using SNAPHU algorithms. The results showed land subsidence has been detected during 2014-2017 over Surabaya city area using ALOS-2/PALSAR-2 images data. These results reveal the subsidence has observed in several area in Surabaya in particular northern part reach up to ∼2 cm/year. The fastest subsidence occurs in highly populated areas suffer vulnerable to flooding and sea level rise impact. In urban areas we found a correlation between land subsidence with residential or industrial land use. It concludes that land subsidence is mainly caused by ground water consumption for industrial and residential use respectively.

A self-reference PRF-shift MR thermometry method utilizing the phase gradient

NASA Astrophysics Data System (ADS)

Langley, Jason; Potter, William; Phipps, Corey; Huang, Feng; Zhao, Qun

2011-12-01

In magnetic resonance (MR) imaging, the most widely used and accurate method for measuring temperature is based on the shift in proton resonance frequency (PRF). However, inter-scan motion and bulk magnetic field shifts can lead to inaccurate temperature measurements in the PRF-shift MR thermometry method. The self-reference PRF-shift MR thermometry method was introduced to overcome such problems by deriving a reference image from the heated or treated image, and approximates the reference phase map with low-order polynomial functions. In this note, a new approach is presented to calculate the baseline phase map in self-reference PRF-shift MR thermometry. The proposed method utilizes the phase gradient to remove the phase unwrapping step inherent to other self-reference PRF-shift MR thermometry methods. The performance of the proposed method was evaluated using numerical simulations with temperature distributions following a two-dimensional Gaussian function as well as phantom and in vivo experimental data sets. The results from both the numerical simulations and experimental data show that the proposed method is a promising technique for measuring temperature.

Effect of shrink wrap packaging for maintaining quality of cucumber during storage.

PubMed

Dhall, Rajinder Kumar; Sharma, Sanjeev R; Mahajan, B V C

2012-08-01

Immature green cucumber cv. 'Padmini' fruits were individually shrink wrapped with Cryovac D955 (60 guage) film and stored at 12 ± 1 °C, 90-95% RH as well as ambient conditions (29-33 °C, 65-70% RH). At 12 ± 1 °C and 90-95% RH, individual shrink wrapped cucumber recorded minimum Physiological loss in weight (0.66%) as compared with unwrapped fruits (11.11%) at the end of refrigerated storage (15 days). The softening (loss of firmness) was maximum (1304.6-876.6 g force) in unwrapped cucumbers whereas in shrink wrapping, minimum loss in firmness (1304.6-1065.3 g force) was observed after 12 days storage at 12 ± 1 °C and 90-95% RH but greater loss of weight and firmness makes the control cucumbers unmarketable after 9 days of storage. There were no rotting at all both in shrink wrapped and unwrapped cucumbers upto 15 days of storage at 12 ± 1 °C and 90-95% RH. After 15 days storage of shrink wrapped cucumbers at 12 ± 1 °C and 90-95% RH, there was loss of green colour and development of yellowness and decay. The sensory attributes score was highest in shrink wrapped cucumbers as compared to unwrapped cucumbers at end of both storage conditions. Thus it can be concluded that individual shrink wrapped cucumber can be stored well upto 15 days at 12 ± 1 °C and 90-95% RH and for 5 days at ambient conditions (29-33 °C, 65-70% RH) with maximum retention of green colour, no spoilage, minimum weight and firmness loss and very good sensory quality attributes whereas, unwrapped fruits can be stored well upto 9 days at 12 ± 1 °C and 90-95% RH and for 2 days at ambient conditions with maximum retention of physico-chemical quality attributes.

Eat Me If You Can: Cognitive Mechanisms Underlying the Distance Effect

PubMed Central

Junghans, Astrid F.; Evers, Catharine; De Ridder, Denise T. D.

2013-01-01

Proximal objects provide affordances that activate the motor information involved in interacting with the objects. This effect has previously been shown for artifacts but not for natural objects, such as food. This study examined whether the sight of proximal food, compared to distant food activates eating-related information. In two experiments reaction times to verbal labels following the sight of proximal and distant objects (food and toys) were measured. Verbal labels included function words that were compatible with one object category (eating and playing) and observation words compatible with both object categories. The sight of food was expected to activate eating-related information when presented at proximity but not at distance, as reflected by faster reaction times to proximal than distant compatible eating words and no difference between reaction times to proximal and distant food for observation words (Experiment 1). Experiment 2 additionally compared the reaction times to wrapped and unwrapped food. The distance effect was expected to occur only for unwrapped food because only unwrapped food is readily edible. As expected, Experiment 1 and 2 revealed faster responses to compatible eating words at proximity than at distance. In Experiment 2 this distance effect occurred only for readily edible, unwrapped food but not for wrapped food. For observation words no difference in response times between the distances was found. These findings suggest that the sight of proximal food activates eating-related information, which could explain people’s differential behavioral responses to reachable versus distant food. The activation of eating-related information upon sight of accessible food could provide a cognition-based explanation for mindless eating. PMID:24367684

Characterizing opto-electret based paper speakers by using a real-time projection Moiré metrology system

NASA Astrophysics Data System (ADS)

Chang, Ya-Ling; Hsu, Kuan-Yu; Lee, Chih-Kung

2016-03-01

Advancement of distributed piezo-electret sensors and actuators facilitates various smart systems development, which include paper speakers, opto-piezo/electret bio-chips, etc. The array-based loudspeaker system possess several advantages over conventional coil speakers, such as light-weightness, flexibility, low power consumption, directivity, etc. With the understanding that the performance of the large-area piezo-electret loudspeakers or even the microfluidic biochip transport behavior could be tailored by changing their dynamic behaviors, a full-field real-time high-resolution non-contact metrology system was developed. In this paper, influence of the resonance modes and the transient vibrations of an arraybased loudspeaker system on the acoustic effect were measured by using a real-time projection moiré metrology system and microphones. To make the paper speaker even more versatile, we combine the photosensitive material TiOPc into the original electret loudspeaker. The vibration of this newly developed opto-electret loudspeaker could be manipulated by illuminating different light-intensity patterns. Trying to facilitate the tailoring process of the opto-electret loudspeaker, projection moiré was adopted to measure its vibration. By recording the projected fringes which are modulated by the contours of the testing sample, the phase unwrapping algorithm can give us a continuous phase distribution which is proportional to the object height variations. With the aid of the projection moiré metrology system, the vibrations associated with each distinctive light pattern could be characterized. Therefore, we expect that the overall acoustic performance could be improved by finding the suitable illuminating patterns. In this manuscript, the system performance of the projection moiré and the optoelectret paper speakers were cross-examined and verified by the experimental results obtained.

Higher-dimensional phase imaging

NASA Astrophysics Data System (ADS)

Huntley, Jonathan M.

2010-04-01

Traditional full-field interferometric techniques (speckle, moiré, holography etc) provide 2-D phase images, which encode the surface deformation state of the object under test. Over the past 15 years, the use of additional spatial or temporal dimensions has been investigated by a number of research groups. Early examples include the measurement of 3-D surface profiles by temporally-varying projected fringe patterns, and dynamic speckle interferometry. More recently (the past 5 years) a family of related techniques (Wavelength Scanning Interferometry, Phase Contrast Spectral Optical Coherence Tomography (OCT), and Tilt Scanning Interferometry) has emerged that provides the volume deformation state of the object. The techniques can be thought of as a marriage between the phase sensing capabilities of Phase Shifting Interferometry and the depth-sensing capabilities of OCT. Finally, in the past 12 months a technique called Hyperspectral Interferometry has been proposed in which absolute optical path distributions are obtained in a single shot through the spectral decomposition of a white light interferogram, and for which the additional dimension therefore corresponds to the illumination wavenumber. An overview of these developments, and the related issue of robust phase unwrapping of noisy 3-D wrapped phase volumes, is presented in this paper.

Extreme ultraviolet interferometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Goldberg, Kenneth A.

EUV lithography is a promising and viable candidate for circuit fabrication with 0.1-micron critical dimension and smaller. In order to achieve diffraction-limited performance, all-reflective multilayer-coated lithographic imaging systems operating near 13-nm wavelength and 0.1 NA have system wavefront tolerances of 0.27 nm, or 0.02 waves RMS. Owing to the highly-sensitive resonant reflective properties of multilayer mirrors and extraordinarily tight tolerances set forth for their fabrication, EUV optical systems require at-wavelength EUV interferometry for final alignment and qualification. This dissertation discusses the development and successful implementation of high-accuracy EUV interferometric techniques. Proof-of-principle experiments with a prototype EUV point-diffraction interferometer for themore » measurement of Fresnel zoneplate lenses first demonstrated sub-wavelength EUV interferometric capability. These experiments spurred the development of the superior phase-shifting point-diffraction interferometer (PS/PDI), which has been implemented for the testing of an all-reflective lithographic-quality EUV optical system. Both systems rely on pinhole diffraction to produce spherical reference wavefronts in a common-path geometry. Extensive experiments demonstrate EUV wavefront-measuring precision beyond 0.02 waves RMS. EUV imaging experiments provide verification of the high-accuracy of the point-diffraction principle, and demonstrate the utility of the measurements in successfully predicting imaging performance. Complementary to the experimental research, several areas of theoretical investigation related to the novel PS/PDI system are presented. First-principles electromagnetic field simulations of pinhole diffraction are conducted to ascertain the upper limits of measurement accuracy and to guide selection of the pinhole diameter. Investigations of the relative merits of different PS/PDI configurations accompany a general study of the most significant sources of systematic measurement errors. To overcome a variety of experimental difficulties, several new methods in interferogram analysis and phase-retrieval were developed: the Fourier-Transform Method of Phase-Shift Determination, which uses Fourier-domain analysis to improve the accuracy of phase-shifting interferometry; the Fourier-Transform Guided Unwrap Method, which was developed to overcome difficulties associated with a high density of mid-spatial-frequency blemishes and which uses a low-spatial-frequency approximation to the measured wavefront to guide the phase unwrapping in the presence of noise; and, finally, an expedient method of Gram-Schmidt orthogonalization which facilitates polynomial basis transformations in wave-front surface fitting procedures.« less

Tension-dependent free energies of nucleosome unwrapping

DOE PAGES

Lequieu, Joshua; Cordoba, Andres; Schwartz, David C.; ...

2016-08-23

Here, nucleosomes form the basic unit of compaction within eukaryotic genomes, and their locations represent an important, yet poorly understood, mechanism of genetic regulation. Quantifying the strength of interactions within the nucleosome is a central problem in biophysics and is critical to understanding how nucleosome positions influence gene expression. By comparing to single-molecule experiments, we demonstrate that a coarse-grained molecular model of the nucleosome can reproduce key aspects of nucleosome unwrapping. Using detailed simulations of DNA and histone proteins, we calculate the tension-dependent free energy surface corresponding to the unwrapping process. The model reproduces quantitatively the forces required to unwrapmore » the nucleosome and reveals the role played by electrostatic interactions during this process. We then demonstrate that histone modifications and DNA sequence can have significant effects on the energies of nucleosome formation. Most notably, we show that histone tails contribute asymmetrically to the stability of the outer and inner turn of nucleosomal DNA and that depending on which histone tails are modified, the tension-dependent response is modulated differently.« less

Low magnitude earthquakes generating significant subsidence: the Lunigiana case study

NASA Astrophysics Data System (ADS)

Samsonov, S. V.; Polcari, M.; Melini, D.; Cannelli, V.; Moro, M.; Bignami, C.; Saroli, M.; Vannoli, P.; Stramondo, S.

2013-12-01

We applied the Differential Interferometric Synthetic Aperture Radar (DInSAR) technique to investigate and measure surface displacements due to the ML 5.2, June 21, 2013, earthquake occurred in the Apuan Alps (NW Italy) at a depth of about 5 km. The Centroid Moment Tensor (CMT) solution from INGV indicates an almost pure normal fault mechanism. Two differential interferograms showing the coseismic displacement were generated using X- band and C-band data respectively. The X-Band interferogram was obtained from a Cosmo-SkyMed ascending pair (azimuth -7.9° and incidence angle 40°) with a time interval of one day (June 21 - June 22) and 139 m spatial baseline, covering an area of about 40x40 km around the epicenter. The topographic phase component was removed using the 90 m SRTM DEM. The C-Band interferferogram was computed from two RADARSAT-2 Standard-3 (S3) images, characterized by 24 days temporal and 69 m spatial baselines, acquired on June 18 and July 12, 2013 on ascending orbit (azimuth -10.8°) with an incidence angle of 34° and covering 100x100 km area around the epicenter. The topographic phase component was removed using 30 m ASTER DEM. Adaptive filtering, phase unwrapping with Minimum Cost Flow (MCF) algorithm and orbital refinement were also applied to both interferograms. We modeled the observed SAR deformation fields using the Okada analytical formulation within a nonlinear inversion scheme, and found them to be consistent with a fault plane dipping towards NW at an angle of about 45°. In spite of the small magnitude, this earthquake produces a surface subsidence of about 1.5 cm in the Line-Of-Sight (LOS) direction, corresponding to about 3 cm along the vertical axis, that can be observed in both interferograms and appears consistent with the normal fault mechanisms.

Dual-sensitivity profilometry with defocused projection of binary fringes.

PubMed

Garnica, G; Padilla, M; Servin, M

2017-10-01

A dual-sensitivity profilometry technique based on defocused projection of binary fringes is presented. Here, two sets of fringe patterns with a sinusoidal profile are produced by applying the same analog low-pass filter (projector defocusing) to binary fringes with a high- and low-frequency spatial carrier. The high-frequency fringes have a binary square-wave profile, while the low-frequency binary fringes are produced with error-diffusion dithering. The binary nature of the binary fringes removes the need for calibration of the projector's nonlinear gamma. Working with high-frequency carrier fringes, we obtain a high-quality wrapped phase. On the other hand, working with low-frequency carrier fringes we found a lower-quality, nonwrapped phase map. The nonwrapped estimation is used as stepping stone for dual-sensitivity temporal phase unwrapping, extending the applicability of the technique to discontinuous (piecewise continuous) surfaces. We are proposing a single defocusing level for faster high- and low-frequency fringe data acquisition. The proposed technique is validated with experimental results.

Image grating metrology using phase-stepping interferometry in scanning beam interference lithography

NASA Astrophysics Data System (ADS)

Li, Minkang; Zhou, Changhe; Wei, Chunlong; Jia, Wei; Lu, Yancong; Xiang, Changcheng; Xiang, XianSong

2016-10-01

Large-sized gratings are essential optical elements in laser fusion and space astronomy facilities. Scanning beam interference lithography is an effective method to fabricate large-sized gratings. To minimize the nonlinear phase written into the photo-resist, the image grating must be measured to adjust the left and right beams to interfere at their waists. In this paper, we propose a new method to conduct wavefront metrology based on phase-stepping interferometry. Firstly, a transmission grating is used to combine the two beams to form an interferogram which is recorded by a charge coupled device(CCD). Phase steps are introduced by moving the grating with a linear stage monitored by a laser interferometer. A series of interferograms are recorded as the displacement is measured by the laser interferometer. Secondly, to eliminate the tilt and piston error during the phase stepping, the iterative least square phase shift method is implemented to obtain the wrapped phase. Thirdly, we use the discrete cosine transform least square method to unwrap the phase map. Experiment results indicate that the measured wavefront has a nonlinear phase around 0.05 λ@404.7nm. Finally, as the image grating is acquired, we simulate the print-error written into the photo-resist.

Time-Series INSAR: An Integer Least-Squares Approach For Distributed Scatterers

NASA Astrophysics Data System (ADS)

Samiei-Esfahany, Sami; Hanssen, Ramon F.

2012-01-01

The objective of this research is to extend the geode- tic mathematical model which was developed for persistent scatterers to a model which can exploit distributed scatterers (DS). The main focus is on the integer least- squares framework, and the main challenge is to include the decorrelation effect in the mathematical model. In order to adapt the integer least-squares mathematical model for DS we altered the model from a single master to a multi-master configuration and introduced the decorrelation effect stochastically. This effect is described in our model by a full covariance matrix. We propose to de- rive this covariance matrix by numerical integration of the (joint) probability distribution function (PDF) of interferometric phases. This PDF is a function of coherence values and can be directly computed from radar data. We show that the use of this model can improve the performance of temporal phase unwrapping of distributed scatterers.

Millimeter-wave radar for vital signs sensing

NASA Astrophysics Data System (ADS)

Petkie, Douglas T.; Benton, Carla; Bryan, Erik

2009-05-01

In this paper, we will describe the development of a 228 GHz heterodyne radar system as a vital signs sensing monitor that can remotely measure respiration and heart rates from distances of 1 to 50 meters. We will discuss the design of the radar system along with several studies of its performance. The system includes the 228 GHz transmitter and heterodyne receiver that are optically coupled to the same 6 inch optical mirror that is used to illuminate the subject under study. Intermediate Frequency (IF) signal processing allows the system to track the phase of the reflected signal through I and Q detection and phase unwrapping. The system monitors the displacement in real time, allowing various studies of its performance to be made. We will review its successes by comparing the measured rates with a wireless health monitor and also describe the challenges of the system.

Group refractive index reconstruction with broadband interferometric confocal microscopy

PubMed Central

Marks, Daniel L.; Schlachter, Simon C.; Zysk, Adam M.; Boppart, Stephen A.

2010-01-01

We propose a novel method of measuring the group refractive index of biological tissues at the micrometer scale. The technique utilizes a broadband confocal microscope embedded into a Mach–Zehnder interferometer, with which spectral interferograms are measured as the sample is translated through the focus of the beam. The method does not require phase unwrapping and is insensitive to vibrations in the sample and reference arms. High measurement stability is achieved because a single spectral interferogram contains all the information necessary to compute the optical path delay of the beam transmitted through the sample. Included are a physical framework defining the forward problem, linear solutions to the inverse problem, and simulated images of biologically relevant phantoms. PMID:18451922

Preliminary investigation of Zagros thrust-fold-belt deformation using SAR interferometry

NASA Technical Reports Server (NTRS)

Nilforoushan, Faramarz; Talbot, Christopher J.; Fielding, Eric J.

2005-01-01

Most of the Zagros deformation resulting from the convergence of Arabia and Eurasia takes place in the Southeast Zagros. To apply the SAR interferometry geodetic technique, a few ERS 1 & 2 satellite images were used to map this continuing deformation proven by GPS. Interferograms over 7 years show surprisingly high coherence. The unwrapped phases display a high correlation with topography reflecting atmospheric noise in addition to the desired tectonic signal. We estimate two simple linear trends and remove them from interferograms. The preliminary results show local uplift rates with a likely minimum of 1-2 mm/yr. These early crude results will be tested by more data in project No. 3174.

A NEW INSAR DERIVED DEM OF BLACK RAPIDS GLACIER

NASA Astrophysics Data System (ADS)

Shugar, D. H.; Rabus, B.; Clague, J. J.

2009-12-01

We have constructed a new digital elevation model representing the 1995 surface of surge-type Black Rapids Glacier and the surrounding central Alaska Range, using ERS-1/2 repeat-pass interferometry. First, we isolated the topographic phase from three interferograms with contrasting perpendicular baselines. Next we attempted to automatically unwrap this topographic phase but encountered numerous errors due to the terrain containing areas of poor coherence from fringe aliasing, radar layover or shadow. We then consistently corrected these persistent phase-unwrapping errors in all three interferograms using an iterative semi-automated approach that capitalizes on the multi-baseline nature of the data set. Over the surface of Black Rapids Glacier, the accuracy of the new DEM is estimated at better than +/- 12 m. Ground-surveyed spot elevations from 1995 corroborate this accuracy estimate. Comparison of the new DEM with a 1951 U.S. Geological Survey topographic map, and with ground survey data from other years, shows the gradual return of Black Rapids Glacier to pre-surge conditions. In the 44-year period between 1951 and 1995 the observed average steepening of the longitudinal profile is ~0.6°. The maximum elevation changes in the ablation and accumulation zones are -256 m and +75 m, respectively, suggesting corresponding average rates of elevation change of about -5.8 m/yr and +1.7 m/yr. These rates are 1.5-2 times higher than those indicated by the ground survey spot elevation measurements over the period 1975 to 2005. Considering the significant overlap of the two periods of measurement, the inferred average rates for 1951-1975 would have to be very large (-7.5 m/yr and +2.3 m/yr, respectively) for these two findings to be consistent. A second comparison with the recently released ASTER G-DEM (data from 2001) led to no glaciologically usable results due to major artifacts in the ASTER G-DEM. We therefore conclude that the 1951 U.S. Geological Survey map and the ASTER G-DEM both appear biased over the Black Rapids Glacier surface and caution is advised when using either for quantitative estimates of elevation change over the glacier surface.

Application of higher-order cepstral techniques in problems of fetal heart signal extraction

NASA Astrophysics Data System (ADS)

Sabry-Rizk, Madiha; Zgallai, Walid; Hardiman, P.; O'Riordan, J.

1996-10-01

Recently, cepstral analysis based on second order statistics and homomorphic filtering techniques have been used in the adaptive decomposition of overlapping, or otherwise, and noise contaminated ECG complexes of mothers and fetals obtained by a transabdominal surface electrodes connected to a monitoring instrument, an interface card, and a PC. Differential time delays of fetal heart beats measured from a reference point located on the mother complex after transformation to cepstra domains are first obtained and this is followed by fetal heart rate variability computations. Homomorphic filtering in the complex cepstral domain and the subuent transformation to the time domain results in fetal complex recovery. However, three problems have been identified with second-order based cepstral techniques that needed rectification in this paper. These are (1) errors resulting from the phase unwrapping algorithms and leading to fetal complex perturbation, (2) the unavoidable conversion of noise statistics from Gaussianess to non-Gaussianess due to the highly non-linear nature of homomorphic transform does warrant stringent noise cancellation routines, (3) due to the aforementioned problems in (1) and (2), it is difficult to adaptively optimize windows to include all individual fetal complexes in the time domain based on amplitude thresholding routines in the complex cepstral domain (i.e. the task of `zooming' in on weak fetal complexes requires more processing time). The use of third-order based high resolution differential cepstrum technique results in recovery of the delay of the order of 120 milliseconds.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Santos-Villalobos, Hector J; Barstow, Del R; Karakaya, Mahmut

Iris recognition has been proven to be an accurate and reliable biometric. However, the recognition of non-ideal iris images such as off angle images is still an unsolved problem. We propose a new biometric targeted eye model and a method to reconstruct the off-axis eye to its frontal view allowing for recognition using existing methods and algorithms. This allows for existing enterprise level algorithms and approaches to be largely unmodified by using our work as a pre-processor to improve performance. In addition, we describe the `Limbus effect' and its importance for an accurate segmentation of off-axis irides. Our method usesmore » an anatomically accurate human eye model and ray-tracing techniques to compute a transformation function, which reconstructs the iris to its frontal, non-refracted state. Then, the same eye model is used to render a frontal view of the reconstructed iris. The proposed method is fully described and results from synthetic data are shown to establish an upper limit on performance improvement and establish the importance of the proposed approach over traditional linear elliptical unwrapping methods. Our results with synthetic data demonstrate the ability to perform an accurate iris recognition with an image taken as much as 70 degrees off-axis.« less

Deformation Measurement In The Hayward Fault Zone Using Partially Correlated Persistent Scatterers

NASA Astrophysics Data System (ADS)

Lien, J.; Zebker, H. A.

2013-12-01

Interferometric synthetic aperture radar (InSAR) is an effective tool for measuring temporal changes in the Earth's surface. By combining SAR phase data collected at varying times and orbit geometries, with InSAR we can produce high accuracy, wide coverage images of crustal deformation fields. Changes in the radar imaging geometry, scatterer positions, or scattering behavior between radar passes causes the measured radar return to differ, leading to a decorrelation phase term that obscures the deformation signal and prevents the use of large baseline data. Here we present a new physically-based method of modeling decorrelation from the subset of pixels with the highest intrinsic signal-to-noise ratio, the so-called persistent scatters (PS). This more complete formulation, which includes both phase and amplitude scintillations, better describes the scattering behavior of partially correlated PS pixels and leads to a more reliable selection algorithm. The new method identifies PS pixels using maximum likelihood signal-to-clutter ratio (SCR) estimation based on the joint interferometric stack phase-amplitude distribution. Our PS selection method is unique in that it considers both phase and amplitude; accounts for correlation between all possible pairs of interferometric observations; and models the effect of spatial and temporal baselines on the stack. We use the resulting maximum likelihood SCR estimate as a criterion for PS selection. We implement the partially correlated persistent scatterer technique to analyze a stack of C-band European Remote Sensing (ERS-1/2) interferometric radar data imaging the Hayward Fault Zone from 1995 to 2000. We show that our technique achieves a better trade-off between PS pixel selection accuracy and network density compared to other PS identification methods, particularly in areas of natural terrain. We then present deformation measurements obtained by the selected PS network. Our results demonstrate that the partially correlated persistent scatterer technique can attain accurate deformation measurements even in areas that suffer decorrelation due to natural terrain. The accuracy of phase unwrapping and subsequent deformation estimation on the spatially sparse PS network depends on both pixel selection accuracy and the density of the network. We find that many additional pixels can be added to the PS list if we are able to correctly identify and add those in which the scattering mechanism exhibits partial, rather than complete, correlation across all radar scenes.

STrategically Acquired Gradient Echo (STAGE) imaging, part I: Creating enhanced T1 contrast and standardized susceptibility weighted imaging and quantitative susceptibility mapping.

PubMed

Chen, Yongsheng; Liu, Saifeng; Wang, Yu; Kang, Yan; Haacke, E Mark

2018-02-01

To provide whole brain grey matter (GM) to white matter (WM) contrast enhanced T1W (T1WE) images, multi-echo quantitative susceptibility mapping (QSM), proton density (PD) weighted images, T1 maps, PD maps, susceptibility weighted imaging (SWI), and R2* maps with minimal misregistration in scanning times <5min. Strategically acquired gradient echo (STAGE) imaging includes two fully flow compensated double echo gradient echo acquisitions with a resolution of 0.67×1.33×2.0mm 3 acquired in 5min for 64 slices. Ten subjects were recruited and scanned at 3 Tesla. The optimum pair of flip angles (6° and 24° with TR=25ms at 3T) were used for both T1 mapping with radio frequency (RF) transmit field correction and creating enhanced GM/WM contrast (the T1WE). The proposed T1WE image was created from a combination of the proton density weighted (6°, PDW) and T1W (24°) images and corrected for RF transmit field variations. Prior to the QSM calculation, a multi-echo phase unwrapping strategy was implemented using the unwrapped short echo to unwrap the longer echo to speed up computation. R2* maps were used to mask deep grey matter and veins during the iterative QSM calculation. A weighted-average sum of susceptibility maps was generated to increase the signal-to-noise ratio (SNR) and the contrast-to-noise ratio (CNR). The proposed T1WE image has a significantly improved CNR both for WM to deep GM and WM to cortical GM compared to the acquired T1W image (the first echo of 24° scan) and the T1MPRAGE image. The weighted-average susceptibility maps have 80±26%, 55±22%, 108±33% SNR increases across the ten subjects compared to the single echo result of 17.5ms for the putamen, caudate nucleus, and globus pallidus, respectively. STAGE imaging offers the potential to create a standardized brain imaging protocol providing four pieces of quantitative tissue property information and multiple types of qualitative information in just 5min. Published by Elsevier Inc.

Monitoring urban subsidence based on SAR lnterferometric point target analysis

USGS Publications Warehouse

Zhang, Y.; Zhang, Jiahua; Gong, W.; Lu, Z.

2009-01-01

lnterferometric point target analysis (IPTA) is one of the latest developments in radar interferometric processing. It is achieved by analysis of the interferometric phases of some individual point targets, which are discrete and present temporarily stable backscattering characteristics, in long temporal series of interferometric SAR images. This paper analyzes the interferometric phase model of point targets, and then addresses two key issues within IPTA process. Firstly, a spatial searching method is proposed to unwrap the interferometric phase difference between two neighboring point targets. The height residual error and linear deformation rate of each point target can then be calculated, when a global reference point with known height correction and deformation history is chosen. Secondly, a spatial-temporal filtering scheme is proposed to further separate the atmosphere phase and nonlinear deformation phase from the residual interferometric phase. Finally, an experiment of the developed IPTA methodology is conducted over Suzhou urban area. Totally 38 ERS-1/2 SAR scenes are analyzed, and the deformation information over 3 546 point targets in the time span of 1992-2002 are generated. The IPTA-derived deformation shows very good agreement with the published result, which demonstrates that the IPTA technique can be developed into an operational tool to map the ground subsidence over urban area.

Vector method for strain estimation in phase-sensitive optical coherence elastography

NASA Astrophysics Data System (ADS)

Matveyev, A. L.; Matveev, L. A.; Sovetsky, A. A.; Gelikonov, G. V.; Moiseev, A. A.; Zaitsev, V. Y.

2018-06-01

A noise-tolerant approach to strain estimation in phase-sensitive optical coherence elastography, robust to decorrelation distortions, is discussed. The method is based on evaluation of interframe phase-variation gradient, but its main feature is that the phase is singled out at the very last step of the gradient estimation. All intermediate steps operate with complex-valued optical coherence tomography (OCT) signals represented as vectors in the complex plane (hence, we call this approach the ‘vector’ method). In comparison with such a popular method as least-square fitting of the phase-difference slope over a selected region (even in the improved variant with amplitude weighting for suppressing small-amplitude noisy pixels), the vector approach demonstrates superior tolerance to both additive noise in the receiving system and speckle-decorrelation caused by tissue straining. Another advantage of the vector approach is that it obviates the usual necessity of error-prone phase unwrapping. Here, special attention is paid to modifications of the vector method that make it especially suitable for processing deformations with significant lateral inhomogeneity, which often occur in real situations. The method’s advantages are demonstrated using both simulated and real OCT scans obtained during reshaping of a collagenous tissue sample irradiated by an IR laser beam producing complex spatially inhomogeneous deformations.

Digital holographic microscopy combined with optical tweezers

NASA Astrophysics Data System (ADS)

Cardenas, Nelson; Yu, Lingfeng; Mohanty, Samarendra K.

2011-02-01

While optical tweezers have been widely used for the manipulation and organization of microscopic objects in three dimensions, observing the manipulated objects along axial direction has been quite challenging. In order to visualize organization and orientation of objects along axial direction, we report development of a Digital holographic microscopy combined with optical tweezers. Digital holography is achieved by use of a modified Mach-Zehnder interferometer with digital recording of interference pattern of the reference and sample laser beams by use of a single CCD camera. In this method, quantitative phase information is retrieved dynamically with high temporal resolution, only limited by frame rate of the CCD. Digital focusing, phase-unwrapping as well as online analysis and display of the quantitative phase images was performed on a software developed on LabView platform. Since phase changes observed in DHOT is very sensitive to optical thickness of trapped volume, estimation of number of particles trapped in the axial direction as well as orientation of non-spherical objects could be achieved with high precision. Since in diseases such as malaria and diabetics, change in refractive index of red blood cells occurs, this system can be employed to map such disease-specific changes in biological samples upon immobilization with optical tweezers.

Phase walk analysis of leptokurtic time series.

PubMed

Schreiber, Korbinian; Modest, Heike I; Räth, Christoph

2018-06-01

The Fourier phase information play a key role for the quantified description of nonlinear data. We present a novel tool for time series analysis that identifies nonlinearities by sensitively detecting correlations among the Fourier phases. The method, being called phase walk analysis, is based on well established measures from random walk analysis, which are now applied to the unwrapped Fourier phases of time series. We provide an analytical description of its functionality and demonstrate its capabilities on systematically controlled leptokurtic noise. Hereby, we investigate the properties of leptokurtic time series and their influence on the Fourier phases of time series. The phase walk analysis is applied to measured and simulated intermittent time series, whose probability density distribution is approximated by power laws. We use the day-to-day returns of the Dow-Jones industrial average, a synthetic time series with tailored nonlinearities mimicing the power law behavior of the Dow-Jones and the acceleration of the wind at an Atlantic offshore site. Testing for nonlinearities by means of surrogates shows that the new method yields strong significances for nonlinear behavior. Due to the drastically decreased computing time as compared to embedding space methods, the number of surrogate realizations can be increased by orders of magnitude. Thereby, the probability distribution of the test statistics can very accurately be derived and parameterized, which allows for much more precise tests on nonlinearities.

Vibration measurement by temporal Fourier analyses of a digital hologram sequence.

PubMed

Fu, Yu; Pedrini, Giancarlo; Osten, Wolfgang

2007-08-10

A method for whole-field noncontact measurement of displacement, velocity, and acceleration of a vibrating object based on image-plane digital holography is presented. A series of digital holograms of a vibrating object are captured by use of a high-speed CCD camera. The result of the reconstruction is a three-dimensional complex-valued matrix with noise. We apply Fourier analysis and windowed Fourier analysis in both the spatial and the temporal domains to extract the displacement, the velocity, and the acceleration. The instantaneous displacement is obtained by temporal unwrapping of the filtered phase map, whereas the velocity and acceleration are evaluated by Fourier analysis and by windowed Fourier analysis along the time axis. The combination of digital holography and temporal Fourier analyses allows for evaluation of the vibration, without a phase ambiguity problem, and smooth spatial distribution of instantaneous displacement, velocity, and acceleration of each instant are obtained. The comparison of Fourier analysis and windowed Fourier analysis in velocity and acceleration measurements is also presented.

InSAR tropospheric delay mitigation by GPS observations: A case study in Tokyo area

NASA Astrophysics Data System (ADS)

Xu, Caijun; Wang, Hua; Ge, Linlin; Yonezawa, Chinatsu; Cheng, Pu

2006-03-01

Like other space geodetic techniques, interferometric synthetic aperture radar (InSAR) is limited by the variations of tropospheric delay noise. In this paper, we analyze the double-difference (DD) feature of tropospheric delay noise in SAR interferogram. By processing the ERS-2 radar pair, we find some tropospheric delay fringes, which have similar patterns with the GMS-5 visible-channel images acquired at almost the same epoch. Thirty-five continuous GPS (CGPS) stations are distributed in the radar scene. We analyze the GPS data by GIPSY-OASIS (II) software and extract the wet zenith delay (WZD) parameters at each station at the same epoch with the master and the slave image, respectively. A cosine mapping function is applied to transform the WZD to wet slant delay (WSD) in line-of-sight direction. Based on the DD WSD parameters, we establish a two-dimensional (2D) semi-variogram model, with the parameters 35.2, 3.6 and 0.88. Then we predict the DD WSD parameters by the kriging algorithm for each pixel of the interferogram, and subtract it from the unwrapped phase. Comparisons between CGPS and InSAR range changes in LOS direction show that the root of mean squares (RMS) decreased from 1.33 cm before correction to 0.87 cm after correction. From the result, we can conclude that GPS WZD parameters can be effectively used to identify and mitigate the large-scale InSAR tropospheric delay noise if the spatial resolution of GPS stations is dense enough.

Validation and Improvement of SRTM Performance over Rugged Terrain

NASA Technical Reports Server (NTRS)

Zebker, Howard A.

2004-01-01

We have previously reported work related to basic technique development in phase unwrapping and generation of digital elevation models (DEM). In the final year of this work we have applied our technique work to the improvement of DEM's produced by SRTM. In particular, we have developed a rigorous mathematical algorithm and means to fill in missing data over rough terrain from other data sets. We illustrate this method by using a higher resolution, but globally less accurate, DEM produced by the TOPSAR airborne instrument over the Galapagos Islands to augment the SRTM data set in this area, We combine this data set with SRTM to use each set to fill in holes left over by the other imaging system. The infilling is done by first interpolating each data set using a prediction error filter that reproduces the same statistical characterization as exhibited by the entire data set within the interpolated region. After this procedure is implemented on each data set, the two are combined on a point by point basis with weights that reflect the accuracy of each data point in its original image. In areas that are better covered by SRTM, TOPSAR data are weighted down but still retain TOPSAR statistics. The reverse is true for regions better covered by TOPSAR. The resulting DEM passes statistical tests and appears quite feasible to the eye, but as this DEM is the best available for the region we cannot fully veri@ its accuracy. Spot checks with GPS points show that locally the technique results in a more comprehensive and accurate map than either data set alone.

Generation of deformation time series from SAR data sequences in areas affected by large dynamics: insights from Sierra Negra caldera, Galápagos Islands

NASA Astrophysics Data System (ADS)

Casu, Francesco; Manconi, Andrea; Pepe, Antonio; Lanari, Riccardo

2010-05-01

Differential Synthetic Aperture Radar Interferometry (DInSAR) is a remote sensing technique that allows producing spatially dense deformation maps of the Earth surface, with centimeter accuracy. To this end, the phase difference of SAR image pairs acquired before and after a deformation episode is properly exploited. This technique, originally applied to investigate single deformation events, has been further extended to analyze the temporal evolution of the deformation field through the generation of displacement time-series. A well-established approach is represented by the Small BAseline Subset (SBAS) technique (Berardino et al., 2002), whose capability to analyze deformation events at low and full spatial resolution has largely been demonstrated. However, in areas where large and/or rapid deformation phenomena occur, the exploitation of the differential interferograms, thus also of the displacement time-series, can be strongly limited by the presence of significant misregistration errors and/or very high fringe rates, making unfeasible the phase unwrapping step. In this work, we propose advances on the generation of deformation time-series in areas affected by large deformation dynamics. We present an extension of the amplitude-based Pixel-Offset analyses by applying the SBAS strategy, in order to move from the investigation of single (large) deformation events to that of dynamic phenomena. The above-mentioned method has been tested on an ENVISAT SAR data archive (Track 61, Frames 7173-7191) related to the Galapagos Islands, focusing on Sierra Negra caldera (Galapagos Islands), an active volcanic area often characterized by large and rapid deformation events leading to severe image misregistration effects (Yun et al., 2007). Moreover, we present a cross-validation of the retrieved deformation estimates comparing our results to continuous GPS measurements and to synthetic deformation obtained by independently modeling the interferometric phase information when available. References: P. Berardino et al., (2002), A new algorithm for Surface Deformation Monitoring based on Small Baseline Differential SAR Interferograms, IEEE Transactions on Geoscience and Remote Sensing, vol. 40, 11, pp. 2375-2383. S-H. Yun et al., (2007), Interferogram formation in the presence of complex and large deformation, Geophys. Res. Lett., vol. 34, L12305.

SU-F-I-24: Feasibility of Magnetic Susceptibility to Relative Electron Density Conversion Method for Radiation Therapy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ito, K; Kadoya, N; Chiba, M

2016-06-15

Purpose: The aim of this study is to develop radiation treatment planning using magnetic susceptibility obtained from quantitative susceptibility mapping (QSM) via MR imaging. This study demonstrates the feasibility of a method for generating a substitute for a CT image from an MRI. Methods: The head of a healthy volunteer was scanned using a CT scanner and a 3.0 T MRI scanner. The CT imaging was performed with a slice thickness of 2.5 mm at 80 and 120 kV (dual-energy scan). These CT images were converted to relative electron density (rED) using the CT-rED conversion table generated by a previousmore » dual-energy CT scan. The CT-rED conversion table was generated using the conversion of the energy-subtracted CT number to rED via a single linear relationship. One T2 star-weighted 3D gradient echo-based sequence with four different echo times images was acquired using the MRI scanner. These T2 star-weighted images were used to estimate the phase data. To estimate the local field map, a Laplacian unwrapping of the phase and background field removal algorithm were implemented to process phase data. To generate a magnetic susceptibility map from the local field map, we used morphology enabled dipole inversion method. The rED map was resampled to the same resolution as magnetic susceptibility, and the magnetic susceptibility-rED conversion table was obtained via voxel-by-voxel mapping between the magnetic susceptibility and rED maps. Results: A correlation between magnetic susceptibility and rED is not observed through our method. Conclusion: Our results show that the correlation between magnetic susceptibility and rED is not observed. As the next step, we assume that the voxel of the magnetic susceptibility map comprises two materials, such as water (0 ppm) and bone (-2.2 ppm) or water and marrow (0.81ppm). The elements of each voxel were estimated from the ratio of the two materials.« less

Facile hybridization of Ni@Fe2O3 superparticles with functionalized reduced graphene oxide and its application as anode material in lithium-ion batteries.

PubMed

Backert, Gregor; Oschmann, Bernd; Tahir, Muhammad Nawaz; Mueller, Franziska; Lieberwirth, Ingo; Balke, Benjamin; Tremel, Wolfgang; Passerini, Stefano; Zentel, Rudolf

2016-09-15

In our present work we developed a novel graphene wrapping approach of Ni@Fe2O3 superparticles, which can be extended as a concept approach for other nanomaterials as well. It uses sulfonated reduced graphene oxide, but avoids thermal treatments and use of toxic agents like hydrazine for its reduction. The modification of graphene oxide is achieved by the introduction of sulfate groups accompanied with reduction and elimination reactions, due to the treatment with oleum. The successful wrapping of nanoparticles is proven by energy dispersive X-ray spectroscopy, high-resolution transmission electron microscopy and Raman spectroscopy. The developed composite material shows strongly improved performance as anode material in lithium-ion batteries (compared to unwrapped Ni@Fe2O3) as it offers a reversible capacity of 1051mAhg(-1) after 40 cycles at C/20, compared with 460mAhg(-1) for unwrapped Ni@Fe2O3. The C rate capability is also improved by the wrapping approach, as specific capacities for wrapped particles are about twice of those offered by unwrapped particles. Additionally, the benefit for the use of the advanced superparticle morphology is demonstrated by comparing wrapped Ni@Fe2O3 particles with wrapped Fe2O3 nanorice. Copyright © 2016 Elsevier Inc. All rights reserved.

Home Electrical Safety Checklist

MedlinePlus

... any object? YES: Unwrap cords. Wrapped cords trap heat that normally escapes loose cords, which can lead to melting or weakening of insulation. Are cords attached to anything (wall, baseboard, etc) ...

NASADEM Global Elevation Model of Earth: Methods for the Refinement and Merger of SRTM and ASTER GDEM

NASA Astrophysics Data System (ADS)

Crippen, R. E.; Buckley, S.; Agram, P. S.; Belz, J. E.; Gurrola, E. M.; Hensley, S.; Kobrick, M.; Lavalle, M.; Martin, J. M.; Neumann, M.; Nguyen, Q.; Rosen, P. A.; Shimada, J.; Simard, M.; Tung, W.

2016-12-01

NASADEM is a near-global elevation model that is being produced primarily by completely reprocessing the Shuttle Radar Topography Mission (SRTM) radar data and then merging it with refined ASTER GDEM elevations. The new and improved SRTM elevations in NASADEM result from better vertical control of each SRTM data swath via reference to ICESat elevations and from SRTM void reductions using advanced interferometric unwrapping algorithms. Errors in SRTM (due to incorrect interferometric unwrapping) are rare but can be found and removed via a detector that relies upon pattern analysis within synergistic comparisons of SRTM and GDEM. Remnant voids in SRTM are filled primarily by GDEM3, but with removal of GDEM glitches that are mostly related to clouds. GDEM glitch removal uses a measure of curvature and then spatial filtering to detect, isolate, and delete anomalous spikes and pits that are uncharacteristic of natural topography. Water masking uses the original SRTM Water Body Dataset (SWBD), but with errors corrected via a new ASTER Water Body Database. The improved SRTM, GDEM, and water body databases will be made available individually in addition to our merged product, which is particularly important for the SRTM dataset, which stands as a February 2000 baseline for many topographic change studies. New and forthcoming freely available elevation data (at reduced resolutions) from the ALOS PRISM World 3D and TanDEM-X projects will contribute to the critical but not yet reached goal of a complete, high-quality elevation model of Earth, and they are expected to provide additional validation for NASADEM. Indeed, cross validation among all of these datasets is a vital part of reaching that goal. The value of elevation data is difficult to overstate. These data are used in nearly all types of geophysical study conducted at or near Earth's surface.

Butterflies' wings deformations using high speed digital holographic interferometry

NASA Astrophysics Data System (ADS)

Mendoza Santoyo, Fernando; Aguayo, Daniel D.; de La Torre-Ibarra, Manuel H.; Salas-Araiza, Manuel D.

2011-08-01

A variety of efforts in different scientific disciplines have tried to mimic the insect's in-flight complex system. The gained knowledge has been applied to improve the performance of different flying artifacts. In this research report it is presented a displacement measurement on butterflies' wings using the optical noninvasive Digital Holographic Interferometry technique with out of plane sensitivity, using a high power cw laser and a high speed CMOS camera to record the unrepeatable displacement movements on these organic tissues. A series of digital holographic interferograms were recorded and the experimental results for several butterflies during flapping events. The relative unwrapped phase maps micro-displacements over the whole wing surface are shown in a wire-mesh representation. The difference between flying modes is remarkably depicted among them.

Preprocessing of SAR interferometric data using anisotropic diffusion filter

NASA Astrophysics Data System (ADS)

Sartor, Kenneth; Allen, Josef De Vaughn; Ganthier, Emile; Tenali, Gnana Bhaskar

2007-04-01

The most commonly used smoothing algorithms for complex data processing are blurring functions (i.e., Hanning, Taylor weighting, Gaussian, etc.). Unfortunately, the filters so designed blur the edges in a Synthetic Aperture Radar (SAR) scene, reduce the accuracy of features, and blur the fringe lines in an interferogram. For the Digital Surface Map (DSM) extraction, the blurring of these fringe lines causes inaccuracies in the height of the unwrapped terrain surface. Our goal here is to perform spatially non-uniform smoothing to overcome the above mentioned disadvantages. This is achieved by using a Complex Anisotropic Non-Linear Diffuser (CANDI) filter that is a spatially varying. In particular, an appropriate choice of the convection function in the CANDI filter is able to accomplish the non-uniform smoothing. This boundary sharpening intra-region smoothing filter acts on interferometric SAR (IFSAR) data with noise to produce an interferogram with significantly reduced noise contents and desirable local smoothing. Results of CANDI filtering will be discussed and compared with those obtained by using the standard filters on simulated data.

Crustal Deformation along San Andreas Fault System revealed by GPS and Sentinel-1 InSAR

NASA Astrophysics Data System (ADS)

Xu, X.; Sandwell, D. T.

2017-12-01

We present a crustal deformation velocity map along the San Andreas Fault System by combining measurements from Sentinel-1 Interferometric Synthetic Aperture Radar (InSAR) and Global Positioning System (GPS) velocity models (CGM V1). We assembled 5 tracks of descending Sentinel-1 InSAR data spanning 2014.11-2017.02, and produced 545 interferograms, each of which covers roughly 250km x 420km area ( 60 bursts). These interferograms are unwrapped using SNAPHU [Chen & Zebker, 2002], with the 2Npi unwrapping ambiguity corrected with a sparse recovery method. We used coherence-based small baseline subset (SBAS) method [Tong & Schmidt, 2016] together with atmospheric correction by common-point stacking [Tymofyeyeva and Fialko, 2015] to construct deformation time series [Xu et. al., 2017]. Then we project the horizontal GPS model and vertical GPS data into satellite line-of-sight directions separately. We first remove the horizontal GPS model from InSAR measurements and perform elevation-dependent atmospheric phase correction. Then we compute the discrepancy between the remaining InSAR measurements and vertical GPS data. We interpolate this discrepancy and remove it from the residual InSAR measurements. Finally, we restore the horizontal GPS model. Preliminary results show that fault creep over the San Jacinto fault, the Elsinore fault, and the San Andreas creeping section is clearly resolved. During the period of drought, the Central Valley of California was subsiding at a high rate (up to 40 cm/yr), while the city of San Jose is uplifting due to recharge, with a quaternary fault acting as a ground water barrier. These findings will be reported during the meeting.

Along-strike variations of the partitioning of convergence across the Haiyuan fault system detected by InSAR

NASA Astrophysics Data System (ADS)

Daout, S.; Jolivet, R.; Lasserre, C.; Doin, M.-P.; Barbot, S.; Tapponnier, P.; Peltzer, G.; Socquet, A.; Sun, J.

2016-04-01

Oblique convergence across Tibet leads to slip partitioning with the coexistence of strike-slip, normal and thrust motion on major fault systems. A key point is to understand and model how faults interact and accumulate strain at depth. Here, we extract ground deformation across the Haiyuan Fault restraining bend, at the northeastern boundary of the Tibetan plateau, from Envisat radar data spanning the 2001-2011 period. We show that the complexity of the surface displacement field can be explained by the partitioning of a uniform deep-seated convergence. Mountains and sand dunes in the study area make the radar data processing challenging and require the latest developments in processing procedures for Synthetic Aperture Radar interferometry. The processing strategy is based on a small baseline approach. Before unwrapping, we correct for atmospheric phase delays from global atmospheric models and digital elevation model errors. A series of filtering steps is applied to improve the signal-to-noise ratio across high ranges of the Tibetan plateau and the phase unwrapping capability across the fault, required for reliable estimate of fault movement. We then jointly invert our InSAR time-series together with published GPS displacements to test a proposed long-term slip-partitioning model between the Haiyuan and Gulang left-lateral Faults and the Qilian Shan thrusts. We explore the geometry of the fault system at depth and associated slip rates using a Bayesian approach and test the consistency of present-day geodetic surface displacements with a long-term tectonic model. We determine a uniform convergence rate of 10 [8.6-11.5] mm yr-1 with an N89 [81-97]°E across the whole fault system, with a variable partitioning west and east of a major extensional fault-jog (the Tianzhu pull-apart basin). Our 2-D model of two profiles perpendicular to the fault system gives a quantitative understanding of how crustal deformation is accommodated by the various branches of this thrust/strike-slip fault system and demonstrates how the geometry of the Haiyuan fault system controls the partitioning of the deep secular motion.

Studies on X-ray diffraction microscopy

NASA Astrophysics Data System (ADS)

Miao, Huijie

This dissertation includes three main parts: studies on coherence requirements for the diffraction microscopy experiments, ice formation on frozen-hydrated sample during data collection, and centering of the diffraction data sets. These three subjects are all in support of our groups overall goal of high resolution 3D imaging of frozen hydrated eukaryotic cells via x-ray diffraction microscopy. X-ray diffraction microscopy requires coherent illumination. However, the actual degree of coherence at some beamlines has never been tested. In research on coherence, our first aim is to determine the transverse coherence width at the sample plane at BL 9.0.1 at the Advanced Light Source in Lawrence Berkeley National Laboratory. An analytical calculation of the coherence at the sample plane is presented. Experimental diffraction patterns of pinhole-pair samples were also taken at the beamline to determine the coherence. Due to the irregular shape of the pinholes and other optics complexity, it was very difficult to fit the data with known theoretical equations as it was traditionally done with 1D data. However, we found out that the auto-correlation function shows clearly three spots. Theoretical calculation have been carried out to show that the degree of coherence can be obtained from the intensities of the three spots. These results are compared with the results from the analytical calculation. We then perform a simulation, showing the required transverse coherence width for reconstructing samples with a given size. Ice accumulation has been a major problem in X-ray diffraction microscopy with frozen hydrated samples. Since the ice structure is different from point to point, we cannot subtract the scattering from ice, nor assume a completely "empty" region outside the finite support constraint area as required for reconstruction. Ice forms during the sample preparation and transfer. However, from the tests we did in September 2007, we found that the ice layer thickens significantly during the data collecting process. One of the tests we did was putting a dry room-temperature grid into the beam, cooling it down to liquid nitrogen temperature, and then collecting the diffraction pattern of it over time. This test showed that, after the cold grid remained in the chamber for a while, a ring could be observed in the diffraction pattern. The time necessary for this ring to be visible is highly dependent on the pressure and vacuum history of the chamber. We will discuss how the chamber pressure influences the ice accumulation rate, how an anti-contamination device can help to reduce the rate, and how this ring forms. The last part of the research is based on simulations and a real data set collected on beamline 9.0.1 at the ALS in Berkeley. In X-ray diffraction microscopy, one of the major challenges when processing the data is to accurately determine the true center of the recorded data; that is, the zero spatial frequency position. Simulations of reconstructing shifted data show that if the center of a 2D diffraction pattern is shifted by more than 3 pixels from its true center, the positivity constraint to the phase, which otherwise might be applied to improve the convergence of the reconstruction algorithm, cannot be imposed. Moreover, the phase unwrapping problem may appear during the reconstruction. These issues undermine the quality of the reconstruction of 2D data. Furthermore, the individual shift in each 2D pattern will lead to errors when assembling a 3D diffraction data cube, making the 3D reconstruction very difficult. We developed a method which uses power spectra of the partial diffraction pattern to pre-align the data. A reconstruction without severe phase unwrapping can then be obtained from the pre-aligned data. Next, the precise zero spatial frequency position can be found by examining the linear ramp present in the reconstructed phase. This method was applied to a freeze-dried yeast data set to show that this approach is effective with experimental data.

Carrier and aberrations removal in interferometric fringe projection profilometry

NASA Astrophysics Data System (ADS)

Blain, P.; Michel, F.; Renotte, Y.; Habraken, S.

2012-04-01

A profilometer which takes advantage of polarization states splitting technique and monochromatic light projection method as a way to overcome ambient lighting for in-situ measurement is under development [1, 2]. Because of the Savart plate which refracts two out of axis beams, the device suffers from aberrations (mostly coma and astigmatism). These aberrations affect the quality of the sinusoidal fringe pattern. In fringe projection profilometry, the unwrapped phase distribution map contains the sum of the object's shape-related phase and carrier-fringe-related phase. In order to extract the 3D shape of the object, the carrier phase has to be removed [3, 4]. An easy way to remove both the fringe carrier and the aberrations of the optical system is to measure the phases of the test object and to measure the phase of a reference plane with the same set up and to subtract both phase maps. This time consuming technique is suitable for laboratory but not for industry. We propose a method to numerically remove both the fringe carrier and the aberrations. A first reference phase of a calibration plane is evaluated knowing the position of the different elements in the set up and the orientation of the fringes. Then a fitting of the phase map by Zernike polynomials is computed [5]. As the triangulation parameters are known during the calibration, the computation of Zernike coefficients has only to be made once. The wavefront error can be adjusted by a scale factor which depends on the position of the test object.

Dynamic displacement monitoring of long-span bridges with a microwave radar interferometer

NASA Astrophysics Data System (ADS)

Zhang, Bochen; Ding, Xiaoli; Werner, Charles; Tan, Kai; Zhang, Bin; Jiang, Mi; Zhao, Jingwen; Xu, Youlin

2018-04-01

Structural health monitoring of long-span bridges is a critical process in ensuring the operational safety of the structures. In this paper, we present experimental results of monitoring the displacements of two long-span bridges in Hong Kong Ting Kau Bridge (TKB) and Tsing Ma Bridge (TMB) with a terrestrial microwave radar interferometer named the GAMMA Portable Radar Interferometer (GPRI). A technique for fusing the measurements from two receiving antennas of the radar instrument is proposed. In addition, a two-step phase unwrapping approach is also tested. The results reveal the bridge dynamic responses under different loading conditions, including winds, vehicle traffic, and passing trains. The results also show that the terrestrial microwave radar interferometer can be used to monitor the dynamics of long-span bridges with unprecedented spatial and temporal resolutions.

A Comparative Study of Radar Stereo and Interferometry for DEM Generation

NASA Astrophysics Data System (ADS)

Gelautz, M.; Paillou, P.; Chen, C. W.; Zebker, H. A.

2004-06-01

In this experiment, we derive and compare radar stereo and interferometric elevation models (DEMs) of a study site in Djibouti, East Africa. As test data, we use a Radarsat stereo pair and ERS-2 and Radarsat interferometric data. Comparison of the reconstructed DEMs with a SPOT reference DEM shows that in regions of high coherence the DEMs produced by interferometry are of much better quality than the stereo result. However, the interferometric error histograms also show some pronounced outliers due to decorrelation and phase unwrapping problems on forested mountain slopes. The more robust stereo result is able to capture the general terrain shape, but finer surface details are lost. A fusion experiment demonstrates that merging the stereoscopic and interferometric DEMs by utilizing coherence- derived weights can significantly improve the accuracy of the computed elevation maps.

Improvement of the Accuracy of InSAR Image Co-Registration Based On Tie Points - A Review.

PubMed

Zou, Weibao; Li, Yan; Li, Zhilin; Ding, Xiaoli

2009-01-01

Interferometric Synthetic Aperture Radar (InSAR) is a new measurement technology, making use of the phase information contained in the Synthetic Aperture Radar (SAR) images. InSAR has been recognized as a potential tool for the generation of digital elevation models (DEMs) and the measurement of ground surface deformations. However, many critical factors affect the quality of InSAR data and limit its applications. One of the factors is InSAR data processing, which consists of image co-registration, interferogram generation, phase unwrapping and geocoding. The co-registration of InSAR images is the first step and dramatically influences the accuracy of InSAR products. In this paper, the principle and processing procedures of InSAR techniques are reviewed. One of important factors, tie points, to be considered in the improvement of the accuracy of InSAR image co-registration are emphatically reviewed, such as interval of tie points, extraction of feature points, window size for tie point matching and the measurement for the quality of an interferogram.

Integrated optical 3D digital imaging based on DSP scheme

NASA Astrophysics Data System (ADS)

Wang, Xiaodong; Peng, Xiang; Gao, Bruce Z.

2008-03-01

We present a scheme of integrated optical 3-D digital imaging (IO3DI) based on digital signal processor (DSP), which can acquire range images independently without PC support. This scheme is based on a parallel hardware structure with aid of DSP and field programmable gate array (FPGA) to realize 3-D imaging. In this integrated scheme of 3-D imaging, the phase measurement profilometry is adopted. To realize the pipeline processing of the fringe projection, image acquisition and fringe pattern analysis, we present a multi-threads application program that is developed under the environment of DSP/BIOS RTOS (real-time operating system). Since RTOS provides a preemptive kernel and powerful configuration tool, with which we are able to achieve a real-time scheduling and synchronization. To accelerate automatic fringe analysis and phase unwrapping, we make use of the technique of software optimization. The proposed scheme can reach a performance of 39.5 f/s (frames per second), so it may well fit into real-time fringe-pattern analysis and can implement fast 3-D imaging. Experiment results are also presented to show the validity of proposed scheme.

Improvement of the Accuracy of InSAR Image Co-Registration Based On Tie Points – A Review

PubMed Central

Zou, Weibao; Li, Yan; Li, Zhilin; Ding, Xiaoli

2009-01-01

Interferometric Synthetic Aperture Radar (InSAR) is a new measurement technology, making use of the phase information contained in the Synthetic Aperture Radar (SAR) images. InSAR has been recognized as a potential tool for the generation of digital elevation models (DEMs) and the measurement of ground surface deformations. However, many critical factors affect the quality of InSAR data and limit its applications. One of the factors is InSAR data processing, which consists of image co-registration, interferogram generation, phase unwrapping and geocoding. The co-registration of InSAR images is the first step and dramatically influences the accuracy of InSAR products. In this paper, the principle and processing procedures of InSAR techniques are reviewed. One of important factors, tie points, to be considered in the improvement of the accuracy of InSAR image co-registration are emphatically reviewed, such as interval of tie points, extraction of feature points, window size for tie point matching and the measurement for the quality of an interferogram. PMID:22399966

Single-shot real-time three dimensional measurement based on hue-height mapping

NASA Astrophysics Data System (ADS)

Wan, Yingying; Cao, Yiping; Chen, Cheng; Fu, Guangkai; Wang, Yapin; Li, Chengmeng

2018-06-01

A single-shot three-dimensional (3D) measurement based on hue-height mapping is proposed. The color fringe pattern is encoded by three sinusoidal fringes with the same frequency but different shifting phase into red (R), green (G) and blue (B) color channels, respectively. It is found that the hue of the captured color fringe pattern on the reference plane maintains monotonic in one period even it has the color crosstalk. Thus, unlike the traditional color phase shifting technique, the hue information is utilized to decode the color fringe pattern and map to the pixels of the fringe displacement in the proposed method. Because the monotonicity of the hue is limited within one period, displacement unwrapping is proposed to obtain the continuous displacement that is finally used to map to the height distribution. This method directly utilizes the hue under the effect of color crosstalk for mapping the height so that no color calibration is involved. Also, as it requires only single shot deformed color fringe pattern, this method can be applied into the real-time or dynamic 3D measurements.

Quality assessment of DInSAR deformation measurements in volcanic areas by comparing GPS and SBAS results

NASA Astrophysics Data System (ADS)

Bonforte, A.; Casu, F.; de Martino, P.; Guglielmino, F.; Lanari, R.; Manzo, M.; Obrizzo, F.; Puglisi, G.; Sansosti, E.; Tammaro, U.

2009-04-01

Differential Synthetic Aperture Radar Interferometry (DInSAR) is a methodology able to measure ground deformation rates and time series of relatively large areas. Several different approaches have been developed over the past few years: they all have in common the capability to measure deformations on a relatively wide area (say 100 km by 100 km) with a high density of the measuring points. For these reasons, DInSAR represents a very useful tool for investigating geophysical phenomena, with particular reference to volcanic areas. As for any measuring technique, the knowledge of the attainable accuracy is of fundamental importance. In the case of DInSAR technology, we have several error sources, such as orbital inaccuracies, phase unwrapping errors, atmospheric artifacts, effects related to the reference point selection, thus making very difficult to define a theoretical error model. A practical way to obtain assess the accuracy is to compare DInSAR results with independent measurements, such as GPS or levelling. Here we present an in-deep comparison between the deformation measurement obtained by exploiting the DInSAR technique referred to as Small BAseline Subset (SBAS) algorithm and by continuous GPS stations. The selected volcanic test-sites are Etna, Vesuvio and Campi Flegrei, in Italy. From continuous GPS data, solutions are computed at the same days SAR data are acquired for direct comparison. Moreover, three dimensional GPS displacement vectors are projected along the radar line of sight of both ascending and descending acquisition orbits. GPS data are then compared with the coherent DInSAR pixels closest to the GPS station. Relevant statistics of the differences between the two measurements are computed and correlated to some scene parameter that may affect DInSAR accuracy (altitude, terrain slope, etc.).

Wavelength scanning achieves pixel super-resolution in holographic on-chip microscopy

NASA Astrophysics Data System (ADS)

Luo, Wei; Göröcs, Zoltan; Zhang, Yibo; Feizi, Alborz; Greenbaum, Alon; Ozcan, Aydogan

2016-03-01

Lensfree holographic on-chip imaging is a potent solution for high-resolution and field-portable bright-field imaging over a wide field-of-view. Previous lensfree imaging approaches utilize a pixel super-resolution technique, which relies on sub-pixel lateral displacements between the lensfree diffraction patterns and the image sensor's pixel-array, to achieve sub-micron resolution under unit magnification using state-of-the-art CMOS imager chips, commonly used in e.g., mobile-phones. Here we report, for the first time, a wavelength scanning based pixel super-resolution technique in lensfree holographic imaging. We developed an iterative super-resolution algorithm, which generates high-resolution reconstructions of the specimen from low-resolution (i.e., under-sampled) diffraction patterns recorded at multiple wavelengths within a narrow spectral range (e.g., 10-30 nm). Compared with lateral shift-based pixel super-resolution, this wavelength scanning approach does not require any physical shifts in the imaging setup, and the resolution improvement is uniform in all directions across the sensor-array. Our wavelength scanning super-resolution approach can also be integrated with multi-height and/or multi-angle on-chip imaging techniques to obtain even higher resolution reconstructions. For example, using wavelength scanning together with multi-angle illumination, we achieved a halfpitch resolution of 250 nm, corresponding to a numerical aperture of 1. In addition to pixel super-resolution, the small scanning steps in wavelength also enable us to robustly unwrap phase, revealing the specimen's optical path length in our reconstructed images. We believe that this new wavelength scanning based pixel super-resolution approach can provide competitive microscopy solutions for high-resolution and field-portable imaging needs, potentially impacting tele-pathology applications in resource-limited-settings.

Transportable and vibration-free full-field low-coherent quantitative phase microscope

NASA Astrophysics Data System (ADS)

Yamauchi, Toyohiko; Yamada, Hidenao; Goto, Kentaro; Matsui, Hisayuki; Yasuhiko, Osamu; Ueda, Yukio

2018-02-01

We developed a transportable Linnik-type full-field low-coherent quantitative phase microscope that is able to compensate for optical path length (OPL) disturbance due to environmental mechanical noises. Though two-beam interferometers such as Linnik ones suffer from unstable OPL difference, we overcame this problem with a mechanical feedback system based on digital signal-processing that controls the OPL difference in sub-nanometer resolution precisely with a feedback bandwidth of 4 kHz. The developed setup has a footprint of 200 mm by 200 mm, a height of 500 mm, and a weight of 4.5 kilograms. In the transmission imaging mode, cells were cultured on a reflection-enhanced glass-bottom dish, and we obtained interference images sequentially while performing stepwise quarter-wavelength phase-shifting. Real-time image processing, including retrieval of the unwrapped phase from interference images and its background correction, along with the acquisition of interference images, was performed on a laptop computer. Emulation of the phase contrast (PhC) images and the differential interference contrast (DIC) images was also performed in real time. Moreover, our setup was applied for full-field cell membrane imaging in the reflection mode, where the cells were cultured on an anti-reflection (AR)-coated glass-bottom dish. The phase and intensity of the light reflected by the membrane revealed the outer shape of the cells independent of the refractive index. In this paper, we show imaging results on cultured cells in both transmission and reflection modes.

AN AUTOPSIC ART: DRAWINGS OF 'DR GRANVILLE'S MUMMY' IN THE ROYAL SOCIETY ARCHIVES.

PubMed

Riggs, Christina

2016-06-20

In 1821 Augustus Bozzi Granville FRS unwrapped and dissected an ancient Egyptian mummy, presenting the results of his examination to the Royal Society in 1825. He commissioned artist Henry Perry to draw the process in stages; these drawings were subsequently engraved by James Basire for publication in Philosophical Transactions. This article presents the original drawings for the first time, allowing comparison with their engravings. Taken together with Granville's accounts of the unwrapping of the mummy, the drawings demonstrate the significant role of illustration and other visual practices in anatomical argumentation in the early nineteenth century, as well as the prestige that commissioned illustrations lent to the performance and dissemination of scientific expertise. Moreover, the drawings include one of the key visual tropes of race science--a skull in left-facing profile, mapped with a facial angle--and thus indicate the early incorporation of Egyptian mummies into typologies of race.

An autopsic art: drawings of ‘Dr Granville's mummy’ in the Royal Society archives

PubMed Central

Riggs, Christina

2016-01-01

In 1821 Augustus Bozzi Granville FRS unwrapped and dissected an ancient Egyptian mummy, presenting the results of his examination to the Royal Society in 1825. He commissioned artist Henry Perry to draw the process in stages; these drawings were subsequently engraved by James Basire for publication in Philosophical Transactions. This article presents the original drawings for the first time, allowing comparison with their engravings. Taken together with Granville's accounts of the unwrapping of the mummy, the drawings demonstrate the significant role of illustration and other visual practices in anatomical argumentation in the early nineteenth century, as well as the prestige that commissioned illustrations lent to the performance and dissemination of scientific expertise. Moreover, the drawings include one of the key visual tropes of race science—a skull in left-facing profile, mapped with a facial angle—and thus indicate the early incorporation of Egyptian mummies into typologies of race. PMID:27386713

Microscopic optical path length difference and polarization measurement system for cell analysis

NASA Astrophysics Data System (ADS)

Satake, H.; Ikeda, K.; Kowa, H.; Hoshiba, T.; Watanabe, E.

2018-03-01

In recent years, noninvasive, nonstaining, and nondestructive quantitative cell measurement techniques have become increasingly important in the medical field. These cell measurement techniques enable the quantitative analysis of living cells, and are therefore applied to various cell identification processes, such as those determining the passage number limit during cell culturing in regenerative medicine. To enable cell measurement, we developed a quantitative microscopic phase imaging system based on a Mach-Zehnder interferometer that measures the optical path length difference distribution without phase unwrapping using optical phase locking. The applicability of our phase imaging system was demonstrated by successful identification of breast cancer cells amongst normal cells. However, the cell identification method using this phase imaging system exhibited a false identification rate of approximately 7%. In this study, we implemented a polarimetric imaging system by introducing a polarimetric module to one arm of the Mach-Zehnder interferometer of our conventional phase imaging system. This module was comprised of a quarter wave plate and a rotational polarizer on the illumination side of the sample, and a linear polarizer on the optical detector side. In addition, we developed correction methods for the measurement errors of the optical path length and birefringence phase differences that arose through the influence of elements other than cells, such as the Petri dish. As the Petri dish holding the fluid specimens was transparent, it did not affect the amplitude information; however, the optical path length and birefringence phase differences were affected. Therefore, we proposed correction of the optical path length and birefringence phase for the influence of elements other than cells, as a prerequisite for obtaining highly precise phase and polarimetric images.

Q-Learning-Based Adjustable Fixed-Phase Quantum Grover Search Algorithm

NASA Astrophysics Data System (ADS)

Guo, Ying; Shi, Wensha; Wang, Yijun; Hu, Jiankun

2017-02-01

We demonstrate that the rotation phase can be suitably chosen to increase the efficiency of the phase-based quantum search algorithm, leading to a dynamic balance between iterations and success probabilities of the fixed-phase quantum Grover search algorithm with Q-learning for a given number of solutions. In this search algorithm, the proposed Q-learning algorithm, which is a model-free reinforcement learning strategy in essence, is used for performing a matching algorithm based on the fraction of marked items λ and the rotation phase α. After establishing the policy function α = π(λ), we complete the fixed-phase Grover algorithm, where the phase parameter is selected via the learned policy. Simulation results show that the Q-learning-based Grover search algorithm (QLGA) enables fewer iterations and gives birth to higher success probabilities. Compared with the conventional Grover algorithms, it avoids the optimal local situations, thereby enabling success probabilities to approach one.

Phase discrepancy induced from least squares wavefront reconstruction of wrapped phase measurements with high noise or large localized wavefront gradients

NASA Astrophysics Data System (ADS)

Steinbock, Michael J.; Hyde, Milo W.

2012-10-01

Adaptive optics is used in applications such as laser communication, remote sensing, and laser weapon systems to estimate and correct for atmospheric distortions of propagated light in real-time. Within an adaptive optics system, a reconstruction process interprets the raw wavefront sensor measurements and calculates an estimate for the unwrapped phase function to be sent through a control law and applied to a wavefront correction device. This research is focused on adaptive optics using a self-referencing interferometer wavefront sensor, which directly measures the wrapped wavefront phase. Therefore, its measurements must be reconstructed for use on a continuous facesheet deformable mirror. In testing and evaluating a novel class of branch-point- tolerant wavefront reconstructors based on the post-processing congruence operation technique, an increase in Strehl ratio compared to a traditional least squares reconstructor was noted even in non-scintillated fields. To investigate this further, this paper uses wave-optics simulations to eliminate many of the variables from a hardware adaptive optics system, so as to focus on the reconstruction techniques alone. The simulation results along with a discussion of the physical reasoning for this phenomenon are provided. For any applications using a self-referencing interferometer wavefront sensor with low signal levels or high localized wavefront gradients, understanding this phenomena is critical when applying a traditional least squares wavefront reconstructor.

3D mapping of breast surface using digital fringe projection

NASA Astrophysics Data System (ADS)

Vairavan, Rajendaran; Retnasamy, Vithyacharan; Mohamad Shahimin, Mukhzeer; Sauli, Zaliman; Leng, Lai Siang; Wan Norhaimi, Wan Mokhzani; Marimuthu, Rajeswaran; Abdullah, Othman; Kirtsaeng, Supap

2017-02-01

Optical sensing technique has inherited non-contact nature for generating 3D surface mapping where its application ranges from MEMS component characterization, corrosion analysis, and vibration analysis. In particular, the digital fringe projection is utilized for 3D mapping of objects through the illumination of structured light for medical application extending from oral dental measurements, lower back deformation analysis, monitoring of scoliosis and 3D face reconstruction for biometric identification. However, the usage of digital fringe projection for 3D mapping of human breast is very minimal. Thus, this paper addresses the application of digital fringe projection for 3D mapping of breast surface based on total non-contact nature. In this work, phase shift method is utilized to perform the 3D mapping. The phase shifted fringe pattern are displayed through a digital projector onto the breast surface, and the distorted fringe patterns are captured by a CCD camera. A phase map is produced, and phase unwrapping was executed to obtain the 3D surface mapping of the breast. The surface height profile from 3D fringe projection was compared with the surface height measured by a direct method using electronic digital vernier caliper. Preliminary results showed the feasibility of digital fringe projection in providing a 3D mapping of breast and its application could be further extended for breast carcinoma detection.

Novel birefringence interrogation for Sagnac loop interferometer sensor with unlimited linear measurement range.

PubMed

He, Haijun; Shao, Liyang; Qian, Heng; Zhang, Xinpu; Liang, Jiawei; Luo, Bin; Pan, Wei; Yan, Lianshan

2017-03-20

A novel demodulation method for Sagnac loop interferometer based sensor has been proposed and demonstrated, by unwrapping the phase changes with birefringence interrogation. A temperature sensor based on Sagnac loop interferometer has been used to verify the feasibility of the proposed method. Several tests with 40 °C temperature range have been accomplished with a great linearity of 0.9996 in full range. The proposed scheme is universal for all Sagnac loop interferometer based sensors and it has unlimited linear measurable range which overwhelming the conventional demodulation method with peak/dip tracing. Furthermore, the influence of the wavelength sampling interval and wavelength span on the demodulation error has been discussed in this work. The proposed interrogation method has a great significance for Sagnac loop interferometer sensor and it might greatly enhance the availability of this type of sensors in practical application.

Polinsar Experiments of Multi-Mode X-Band Data Over South Area of China

NASA Astrophysics Data System (ADS)

Lu, L.; Yan, Q.; Duan, M.; Zhang, Y.

2012-08-01

This paper makes the polarimetric and polarimetric interferometric synthetic aperture radar (PolInSAR) experiments with the high-resolution X-band data acquired by Multi-mode airborne SAR system over an area around Linshui, south of China containing tropic vegetation and urban areas. Polarimetric analysis for typical tropic vegetations and man-made objects are presented, some polarimetric descriptors sensitive to vegetations and man-made objects are selected. Then, the PolInSAR information contained in the data is investigated, considering characteristics of the Multi-mode-XSAR dataset, a dual-baseline polarimetric interferometry method is proposed in this paper. The method both guarantees the high coherence on fully polarimetric data and combines the benefits of short and long baseline that helpful to the phase unwrapping and height sensitivity promotion. PolInSAR experiment results displayed demonstrates Multi-mode-XSAR datasets have intuitive capabilities for amount of application of land classification, objects detection and DSM mapping.

A Continental Rifting Event in Tanzania Revealed by Envisat and ALOS InSAR Observations

NASA Astrophysics Data System (ADS)

Oyen, A. M.; Marinkovic, P. S.; Wauthier, C.; d'Oreye, N.; Hanssen, R. F.

2008-11-01

From July to September 2007 a series of moderate earthquakes struck the area South of the Gelai volcano, located on the Eastern branch of the East African Rift (North Tanzania). Most deformation patterns detected by InSAR in these period are very complex, impeding proper interpretation. To decrease the complexity of the models of the deformation, this study proposes two strategies of combining data from different tracks and sensors. In a first stage a method is proposed to correct unwrapping errors in C-band using the much more coherent L-band data. Furthermore, a modeling optimization method is explored, which aims at the decomposition of the deformation in smaller temporal baselines, by means of creating new, artificial interferograms and the use of models. Due to the higher coherence level and fewer phase cycles in L-band, the deformation interpretation is facilitated but model residual interpretation has become more difficult compared to C-band.

Spotlight SAR interferometry for terrain elevation mapping and interferometric change detection

DOE Office of Scientific and Technical Information (OSTI.GOV)

Eichel, P.H.; Ghiglia, D.C.; Jakowatz, C.V. Jr.

1996-02-01

In this report, we employ an approach quite different from any previous work; we show that a new methodology leads to a simpler and clearer understanding of the fundamental principles of SAR interferometry. This methodology also allows implementation of an important collection mode that has not been demonstrated to date. Specifically, we introduce the following six new concepts for the processing of interferometric SAR (INSAR) data: (1) processing using spotlight mode SAR imaging (allowing ultra-high resolution), as opposed to conventional strip-mapping techniques; (2) derivation of the collection geometry constraints required to avoid decorrelation effects in two-pass INSAR; (3) derivation ofmore » maximum likelihood estimators for phase difference and the change parameter employed in interferometric change detection (ICD); (4) processing for the two-pass case wherein the platform ground tracks make a large crossing angle; (5) a robust least-squares method for two-dimensional phase unwrapping formulated as a solution to Poisson`s equation, instead of using traditional path-following techniques; and (6) the existence of a simple linear scale factor that relates phase differences between two SAR images to terrain height. We show both theoretical analysis, as well as numerous examples that employ real SAR collections to demonstrate the innovations listed above.« less

a High Precision dem Extraction Method Based on Insar Data

NASA Astrophysics Data System (ADS)

Wang, Xinshuang; Liu, Lingling; Shi, Xiaoliang; Huang, Xitao; Geng, Wei

2018-04-01

In the 13th Five-Year Plan for Geoinformatics Business, it is proposed that the new InSAR technology should be applied to surveying and mapping production, which will become the innovation driving force of geoinformatics industry. This paper will study closely around the new outline of surveying and mapping and then achieve the TerraSAR/TanDEM data of Bin County in Shaanxi Province in X band. The studying steps are as follows; Firstly, the baseline is estimated from the orbital data; Secondly, the interferometric pairs of SAR image are accurately registered; Thirdly, the interferogram is generated; Fourth, the interferometric correlation information is estimated and the flat-earth phase is removed. In order to solve the phase noise and the discontinuity phase existing in the interferometric image of phase, a GAMMA adaptive filtering method is adopted. Aiming at the "hole" problem of missing data in low coherent area, the interpolation method of low coherent area mask is used to assist the phase unwrapping. Then, the accuracy of the interferometric baseline is estimated from the ground control points. Finally, 1 : 50000 DEM is generated, and the existing DEM data is used to verify the accuracy through statistical analysis. The research results show that the improved InSAR data processing method in this paper can obtain the high-precision DEM of the study area, exactly the same with the topography of reference DEM. The R2 can reach to 0.9648, showing a strong positive correlation.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stassi, D.; Ma, H.; Schmidt, T. G., E-mail: taly.gilat-schmidt@marquette.edu

Purpose: Reconstructing a low-motion cardiac phase is expected to improve coronary artery visualization in coronary computed tomography angiography (CCTA) exams. This study developed an automated algorithm for selecting the optimal cardiac phase for CCTA reconstruction. The algorithm uses prospectively gated, single-beat, multiphase data made possible by wide cone-beam imaging. The proposed algorithm differs from previous approaches because the optimal phase is identified based on vessel image quality (IQ) directly, compared to previous approaches that included motion estimation and interphase processing. Because there is no processing of interphase information, the algorithm can be applied to any sampling of image phases, makingmore » it suited for prospectively gated studies where only a subset of phases are available. Methods: An automated algorithm was developed to select the optimal phase based on quantitative IQ metrics. For each reconstructed slice at each reconstructed phase, an image quality metric was calculated based on measures of circularity and edge strength of through-plane vessels. The image quality metric was aggregated across slices, while a metric of vessel-location consistency was used to ignore slices that did not contain through-plane vessels. The algorithm performance was evaluated using two observer studies. Fourteen single-beat cardiac CT exams (Revolution CT, GE Healthcare, Chalfont St. Giles, UK) reconstructed at 2% intervals were evaluated for best systolic (1), diastolic (6), or systolic and diastolic phases (7) by three readers and the algorithm. Pairwise inter-reader and reader-algorithm agreement was evaluated using the mean absolute difference (MAD) and concordance correlation coefficient (CCC) between the reader and algorithm-selected phases. A reader-consensus best phase was determined and compared to the algorithm selected phase. In cases where the algorithm and consensus best phases differed by more than 2%, IQ was scored by three readers using a five point Likert scale. Results: There was no statistically significant difference between inter-reader and reader-algorithm agreement for either MAD or CCC metrics (p > 0.1). The algorithm phase was within 2% of the consensus phase in 15/21 of cases. The average absolute difference between consensus and algorithm best phases was 2.29% ± 2.47%, with a maximum difference of 8%. Average image quality scores for the algorithm chosen best phase were 4.01 ± 0.65 overall, 3.33 ± 1.27 for right coronary artery (RCA), 4.50 ± 0.35 for left anterior descending (LAD) artery, and 4.50 ± 0.35 for left circumflex artery (LCX). Average image quality scores for the consensus best phase were 4.11 ± 0.54 overall, 3.44 ± 1.03 for RCA, 4.39 ± 0.39 for LAD, and 4.50 ± 0.18 for LCX. There was no statistically significant difference (p > 0.1) between the image quality scores of the algorithm phase and the consensus phase. Conclusions: The proposed algorithm was statistically equivalent to a reader in selecting an optimal cardiac phase for CCTA exams. When reader and algorithm phases differed by >2%, image quality as rated by blinded readers was statistically equivalent. By detecting the optimal phase for CCTA reconstruction, the proposed algorithm is expected to improve coronary artery visualization in CCTA exams.« less

A strategy for Local Surface Stability Monitoring Using SAR Imagery

NASA Astrophysics Data System (ADS)

Kim, J.; Lan, C. W.; Lin, S. Y.; vanGasselt, S.; Yun, H.

2017-12-01

In order to provide sufficient facilities to satisfy a growing number of residents, nowadays there are many constructions and maintenance of infrastructures or buildings undergoing above and below the surface of urban area. In some cases we have learned that disasters might happen if the developments were conducted on unknown or geologically unstable ground or in over-developed areas. To avoid damages caused by such settings, it is essential to perform a regular monitoring scheme to understand the ground stability over the whole urban area. Through long-term monitoring, we firstly aim to observe surface stability over the construction sites. Secondly, we propose to implement an automatic extraction and tracking of suspicious unstable area. To achieve this, we used 12-days-interval C-band Sentinel-1A Synthetic Aperture Radar (SAR) images as the main source to perform regular monitoring. Differential Interferometric SAR (D-InSAR) technique was applied to generate interferograms. Together with the accumulation of updated Sentinel-1A SAR images, time series interferograms were formed accordingly. For the purpose of observing surface stability over known construction sites, the interferograms and the unwrapped products could be used to identify the surface displacement occurring before and after specific events. In addition, Small Baseline Subset (SBAS) and Permanent Scatterers (PS) approaches combining a set of unwrapped D-InSAR interferograms were also applied to derive displacement velocities over long-term periods. For some cases, we conducted the ascending and descending mode time series analysis to decompose three surface migration vectors and to precisely identify the risk pattern. Regarding the extraction of suspicious unstable areas, we propose to develop an automatic pattern recognition algorithm for the identification of specific fringe patterns involving various potential risks. The detected fringes were tracked in the time series interferograms and overlapped with various GIS layers to find correlations with the environmental elements causing the risks. Taipei City and Taichung City located in northern Taiwan and Ulsan City in Korea were selected to demonstrate the feasibility of the proposed method.

3D displacement time series in the Afar rift zone computed from SAR phase and amplitude information

NASA Astrophysics Data System (ADS)

Casu, Francesco; Manconi, Andrea

2013-04-01

Large and rapid deformations, such as those caused by earthquakes, eruptions, and landslides cannot be fully measured by using standard DInSAR applications. Indeed, the phase information often degrades and some areas of the interferograms are affected by high fringe rates, leading to difficulties in the phase unwrapping, and/or to complete loss of coherence due to significant misregistration errors. This limitation can be overcome by exploiting the SAR image amplitude information instead of the phase, and by calculating the Pixel-Offset (PO) field SAR image pairs, for both range and azimuth directions. Moreover, it is possible to combine the PO results by following the same rationale of the SBAS technique, to finally retrieve the offset-based deformation time series. Such technique, named PO-SBAS, permits to retrieve the deformation field in areas affected by very large displacements at an accuracy that, for ENVISAT data, correspond to 30 cm and 15 cm for the range and azimuth, respectively [1]. Moreover, the combination of SBAS and PO-SBAS time series can help to better study and model deformation phenomena characterized by spatial and temporal heterogeneities [2]. The Dabbahu rift segment of the Afar depression has been active since 2005 when a 2.5 km3 dyke intrusion and hundreds of earthquakes marked the onset a rifting episode which continues to date. The ENVISAT satellite has repeatedly imaged the Afar depression since 2003, generating a large SAR archive. In this work, we study the Afar rift region deformations by using both the phase and amplitude information of several sets of SAR images acquired from ascending and descending ENVISAT tracks. We combined sets of small baseline interferograms through the SBAS algorithm, and we generate both ground deformation maps and time series along the satellite Line-Of-Sight (LOS). In areas where the deformation gradient causes loss of coherence, we retrieve the displacement field through the amplitude information. Furthermore, we could also retrieve the full 3D deformation field, by considering the North-South displacement component obtained from the azimuth PO information. The combination of SBAS and PO-SBAS information permits to better retrieve and constrain the full deformation field due to repeated intrusions, fault movements, as well as the magma movements from individual magma chambers. [1] Casu, F., A. Manconi, A. Pepe and R. Lanari, 2011. Deformation time-series generation in areas characterized by large displacement dynamics: the SAR amplitude Pixel-Offset SBAS technique, IEEE Transaction on Geosciences and Remote Sensing. [2] Manconi, A. and F. Casu, 2012. Joint analysis of displacement time series retrieved from SAR phase and amplitude: impact on the estimation of volcanic source parameters, Geophysical Research Letters, doi:10.1029/2012GL052202.

Automated selection of the optimal cardiac phase for single-beat coronary CT angiography reconstruction.

PubMed

Stassi, D; Dutta, S; Ma, H; Soderman, A; Pazzani, D; Gros, E; Okerlund, D; Schmidt, T G

2016-01-01

Reconstructing a low-motion cardiac phase is expected to improve coronary artery visualization in coronary computed tomography angiography (CCTA) exams. This study developed an automated algorithm for selecting the optimal cardiac phase for CCTA reconstruction. The algorithm uses prospectively gated, single-beat, multiphase data made possible by wide cone-beam imaging. The proposed algorithm differs from previous approaches because the optimal phase is identified based on vessel image quality (IQ) directly, compared to previous approaches that included motion estimation and interphase processing. Because there is no processing of interphase information, the algorithm can be applied to any sampling of image phases, making it suited for prospectively gated studies where only a subset of phases are available. An automated algorithm was developed to select the optimal phase based on quantitative IQ metrics. For each reconstructed slice at each reconstructed phase, an image quality metric was calculated based on measures of circularity and edge strength of through-plane vessels. The image quality metric was aggregated across slices, while a metric of vessel-location consistency was used to ignore slices that did not contain through-plane vessels. The algorithm performance was evaluated using two observer studies. Fourteen single-beat cardiac CT exams (Revolution CT, GE Healthcare, Chalfont St. Giles, UK) reconstructed at 2% intervals were evaluated for best systolic (1), diastolic (6), or systolic and diastolic phases (7) by three readers and the algorithm. Pairwise inter-reader and reader-algorithm agreement was evaluated using the mean absolute difference (MAD) and concordance correlation coefficient (CCC) between the reader and algorithm-selected phases. A reader-consensus best phase was determined and compared to the algorithm selected phase. In cases where the algorithm and consensus best phases differed by more than 2%, IQ was scored by three readers using a five point Likert scale. There was no statistically significant difference between inter-reader and reader-algorithm agreement for either MAD or CCC metrics (p > 0.1). The algorithm phase was within 2% of the consensus phase in 15/21 of cases. The average absolute difference between consensus and algorithm best phases was 2.29% ± 2.47%, with a maximum difference of 8%. Average image quality scores for the algorithm chosen best phase were 4.01 ± 0.65 overall, 3.33 ± 1.27 for right coronary artery (RCA), 4.50 ± 0.35 for left anterior descending (LAD) artery, and 4.50 ± 0.35 for left circumflex artery (LCX). Average image quality scores for the consensus best phase were 4.11 ± 0.54 overall, 3.44 ± 1.03 for RCA, 4.39 ± 0.39 for LAD, and 4.50 ± 0.18 for LCX. There was no statistically significant difference (p > 0.1) between the image quality scores of the algorithm phase and the consensus phase. The proposed algorithm was statistically equivalent to a reader in selecting an optimal cardiac phase for CCTA exams. When reader and algorithm phases differed by >2%, image quality as rated by blinded readers was statistically equivalent. By detecting the optimal phase for CCTA reconstruction, the proposed algorithm is expected to improve coronary artery visualization in CCTA exams.

A time series deformation estimation in the NW Himalayas using SBAS InSAR technique

NASA Astrophysics Data System (ADS)

Kumar, V.; Venkataraman, G.

2012-12-01

A time series land deformation studies in north western Himalayan region has been presented in this study. Synthetic aperture radar (SAR) interferometry (InSAR) is an important tool for measuring the land displacement caused by different geological processes [1]. Frequent spatial and temporal decorrelation in the Himalayan region is a strong impediment in precise deformation estimation using conventional interferometric SAR approach. In such cases, advanced DInSAR approaches PSInSAR as well as Small base line subset (SBAS) can be used to estimate earth surface deformation. The SBAS technique [2] is a DInSAR approach which uses a twelve or more number of repeat SAR acquisitions in different combinations of a properly chosen data (subsets) for generation of DInSAR interferograms using two pass interferometric approach. Finally it leads to the generation of mean deformation velocity maps and displacement time series. Herein, SBAS algorithm has been used for time series deformation estimation in the NW Himalayan region. ENVISAT ASAR IS2 swath data from 2003 to 2008 have been used for quantifying slow deformation. Himalayan region is a very active tectonic belt and active orogeny play a significant role in land deformation process [3]. Geomorphology in the region is unique and reacts to the climate change adversely bringing with land slides and subsidence. Settlements on the hill slopes are prone to land slides, landslips, rockslides and soil creep. These hazardous features have hampered the over all progress of the region as they obstruct the roads and flow of traffic, break communication, block flowing water in stream and create temporary reservoirs and also bring down lot of soil cover and thus add enormous silt and gravel to the streams. It has been observed that average deformation varies from -30.0 mm/year to 10 mm/year in the NW Himalayan region . References [1] Massonnet, D., Feigl, K.L.,Rossi, M. and Adragna, F. (1994) Radar interferometry mapping of deformation in the year after the Landers earthquake. Nature 1994, 369, 227-230. [2] Berardino, P., Fornaro, G., Lanari, R., Sansosti, E. (2002). A new algorithm for surface deformation Monitoring based on Small Baseline Differential SAR Interferograms. IEEE Transactions on Geoscience and Remote Sensing, 40 (11), 2375-2383. [3] GEOLOGICAL SURVEY OF INDIA (GSI), (1999) Inventory of the Himalayan glaciers. Special publication, vol. 34, pp. 165-168. [4] Chen, C.W., and Zebker, H. A., (2000). Network approaches to two-dimensional phase unwrapping: intractability and two new algorithms. Journal of the Optical Society of America, A, 17, 401-414.

Unwrapping Students' Ideas about Fractions

ERIC Educational Resources Information Center

Lewis, Rebecca M.; Gibbons, Lynsey K.; Kazemi, Elham; Lind, Teresa

2015-01-01

Supporting students to develop an understanding of the meaning of fractions is an important goal of elementary school mathematics. This involves developing partitioning strategies, creating representations, naming fractional quantities, and using symbolic notation. This article describes how teachers can use a formative assessment problem to…

Evaluation of Ophthalmic Surgical Instrument Sterility Using Short-Cycle Sterilization for Sequential Same-Day Use.

PubMed

Chang, David F; Hurley, Nikki; Mamalis, Nick; Whitman, Jeffrey

2018-03-27

The common practice of short-cycle sterilization for ophthalmic surgical instrumentation has come under increased regulatory scrutiny. This study was undertaken to evaluate the efficacy of short-cycle sterilization processing for consecutive same-day cataract procedures. Testing of specific sterilization processing methods by an independent medical device validation testing laboratory. Phaco handpieces from 3 separate manufacturers were tested along with appropriate biologic indicators and controls using 2 common steam sterilizers. A STATIM 2000 sterilizer (SciCan, Canonsburg, PA) with the STATIM metal cassette, and an AMSCO Century V116 pre-vacuum sterilizer (STERIS, Mentor, OH) using a Case Medical SteriTite container (Case Medical, South Hackensack, NJ) rigid container were tested using phaco tips and handpieces from 3 different manufacturers. Biological indicators were inoculated with highly resistant Geobacillus stearothermophilus, and each sterility verification test was performed in triplicate. Both wrapped and contained loads were tested with full dry cycles and a 7-day storage time to simulate prolonged storage. In adherence with the manufacturers' instructions for use (IFU), short cycles (3.0-3.5-minute exposure times) for unwrapped and contained loads were also tested after only 1 minute of dry time to simulate use on a consecutive case. Additional studies were performed to demonstrate whether any moisture present in the load containing phaco handpieces postprocessing was sterile and would affect the sterility of the contents after a 3-minute transit/storage time. This approximated the upper limit of time needed to transfer a containment device to the operating room. Presence or absence of microbial growth from cultured test samples. All inoculated test samples from both sterilizers were negative for growth of the target organism whether the full dry phase was interrupted or not. Pipetted postprocessing moisture samples and swabs of the handpieces were also negative for growth after a 3-minute transit/storage time. These studies support the use of unwrapped, short-cycle sterilization that adheres to the IFU of these 2 popular Food and Drug Administration-cleared sterilizers for sequential same-day cataract surgeries. A full drying phase is not necessary when the instruments are kept within the covered sterilizer containment device for prompt use on a sequential case. Copyright © 2018 American Academy of Ophthalmology. Published by Elsevier Inc. All rights reserved.

Camembert-type cheese ripening dynamics are changed by the properties of wrapping films.

PubMed

Picque, D; Leclercq-Perlat, M N; Guillemin, H; Perret, B; Cattenoz, T; Provost, J J; Corrieu, G

2010-12-01

Four gas-permeable wrapping films exhibiting different degrees of water permeability (ranging from 1.6 to 500 g/m(2) per d) were tested to study their effect on soft-mold (Camembert-type) cheese-ripening dynamics compared with unwrapped cheeses. Twenty-three-day trials were performed in 2 laboratory-size (18L) respiratory-ripening cells under controlled temperature (6 ± 0.5°C), relative humidity (75 ± 2%), and carbon dioxide content (0.5 to 1%). The films allowed for a high degree of respiratory activity; no limitation in gas permeability was observed. The wide range of water permeability of the films led to considerable differences in cheese water loss (from 0.5 to 12% on d 23, compared with 15% for unwrapped cheeses), which appeared to be a key factor in controlling cheese-ripening progress. A new relationship between 2 important cheese-ripening descriptors (increase of the cheese core pH and increase of the cheese's creamy underrind thickness) was shown in relation to the water permeability of the wrapping film. High water losses (more than 10 to 12% on d 23) also were observed for unwrapped cheeses, leading to Camembert cheeses that were too dry and poorly ripened. On the other hand, low water losses (from 0.5 to 1% on d 23) led to over-ripening in the cheese underrind, which became runny as a result. Finally, water losses from around 3 to 6% on d 23 led to good ripening dynamics and the best cheese quality. This level of water loss appeared to be ideal in terms of cheese-wrapping film design. Copyright © 2010 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

Molecular dynamics analysis of stabilities of the telomeric Watson-Crick duplex and the associated i-motif as a function of pH and temperature.

PubMed

Panczyk, Tomasz; Wolski, Pawel

2018-06-01

This work deals with a molecular dynamics analysis of the protonated and deprotonated states of the natural sequence d[(CCCTAA) 3 CCCT] of the telomeric DNA forming the intercalated i-motif or paired with the sequence d[(CCCTAA) 3 CCCT] and forming the Watson-Crick (WC) duplex. By utilizing the amber force field for nucleic acids we built the i-motif and the WC duplex either with native cytosines or using their protonated forms. We studied, by applying molecular dynamics simulations, the role of hydrogen bonds between cytosines or in cytosine-guanine pairs in the stabilization of both structures in the physiological fluid. We found that hydrogen bonds exist in the case of protonated i-motif and in the standard form of the WC duplex. They, however, vanish in the case of the deprotonated i-motif and protonated form of the WC duplex. By determining potentials of mean force in the enforced unwrapping of these structures we found that the protonated i-motif is thermodynamically the most stable. Its deprotonation leads to spontaneous and observed directly in the unbiased calculations unfolding of the i-motif to the hairpin structure at normal temperature. The WC duplex is stable in its standard form and its slight destabilization is observed at the acidic pH. However, the protonated WC duplex unwraps very slowly at 310 K and its decomposition was not observed in the unbiased calculations. At higher temperatures (ca. 400 K or more) the WC duplex unwraps spontaneously. Copyright © 2018. Published by Elsevier B.V.

A Motion Detection Algorithm Using Local Phase Information

PubMed Central

Lazar, Aurel A.; Ukani, Nikul H.; Zhou, Yiyin

2016-01-01

Previous research demonstrated that global phase alone can be used to faithfully represent visual scenes. Here we provide a reconstruction algorithm by using only local phase information. We also demonstrate that local phase alone can be effectively used to detect local motion. The local phase-based motion detector is akin to models employed to detect motion in biological vision, for example, the Reichardt detector. The local phase-based motion detection algorithm introduced here consists of two building blocks. The first building block measures/evaluates the temporal change of the local phase. The temporal derivative of the local phase is shown to exhibit the structure of a second order Volterra kernel with two normalized inputs. We provide an efficient, FFT-based algorithm for implementing the change of the local phase. The second processing building block implements the detector; it compares the maximum of the Radon transform of the local phase derivative with a chosen threshold. We demonstrate examples of applying the local phase-based motion detection algorithm on several video sequences. We also show how the locally detected motion can be used for segmenting moving objects in video scenes and compare our local phase-based algorithm to segmentation achieved with a widely used optic flow algorithm. PMID:26880882

Human centromeric CENP-A chromatin is a homotypic, octameric nucleosome at all cell cycle points

PubMed Central

Miga, Karen H.; Sekulic, Nikolina; Soni, Gautam V.; Kim, Dong Hyun; Wong, Adeline K.; Lee, Ah Young; Nguyen, Kristen; Dekker, Cees; Ren, Bing; Black, Ben E.

2017-01-01

Chromatin assembled with centromere protein A (CENP-A) is the epigenetic mark of centromere identity. Using new reference models, we now identify sites of CENP-A and histone H3.1 binding within the megabase, α-satellite repeat–containing centromeres of 23 human chromosomes. The overwhelming majority (97%) of α-satellite DNA is found to be assembled with histone H3.1–containing nucleosomes with wrapped DNA termini. In both G1 and G2 cell cycle phases, the 2–4% of α-satellite assembled with CENP-A protects DNA lengths centered on 133 bp, consistent with octameric nucleosomes with DNA unwrapping at entry and exit. CENP-A chromatin is shown to contain equimolar amounts of CENP-A and histones H2A, H2B, and H4, with no H3. Solid-state nanopore analyses show it to be nucleosomal in size. Thus, in contrast to models for hemisomes that briefly transition to octameric nucleosomes at specific cell cycle points or heterotypic nucleosomes containing both CENP-A and histone H3, human CENP-A chromatin complexes are octameric nucleosomes with two molecules of CENP-A at all cell cycle phases. PMID:28235947

Thinking Inside the Box

ERIC Educational Resources Information Center

Golding, Barry

2011-01-01

The "men's sheds" movement is a grassroots phenomenon that has engaged and inspired men from communities across Australia in hands-on, workshop-based social activity. This article seeks to "unwrap" one of several forms of learning that have been found to be enthusiastically embraced by older men previously thought of, almost…

Unwrapping Rap: A Literacy of Lived Experience.

ERIC Educational Resources Information Center

Brown, Stephen G.

The adversarial forces of governmental censorship, freedom of expression, and capitalistic appropriation are engaged in an acrimonious debate over "Gangsta' Rap" that is being played out in the public spaces of popular culture. However, as a literacy of lived experience, Gangsta' Rap warrants critical investigation. Many postmodern…

Lightweight Passive Microclimate Cooling Device

DTIC Science & Technology

1993-03-01

rabrication. No consideration was given to weight. We have examined alternate methods of construction of the backpack and cylinder assembly and thin...13 Figure 7. Water Adsorption on Magnesium Chloride ........... 14 Figure 8. Cylinder Assembly ................................ 20...Figure 9. Backpack Assembly ............................... 21 Figure 10. Unwrapped Vest ................................... 22 Figure 11. Adsorption

An Interactive Classroom Activity Demonstrating Reaction Mechanisms and Rate-Determining Steps

ERIC Educational Resources Information Center

Jennings, Laura D.; Keller, Steven W.

2005-01-01

An interactive classroom activity that includes two-step reaction of unwrapping and eating chocolate candies is described which brings not only the reaction intermediate, but also the reactants and products into macroscopic view. The qualitative activation barriers of both steps can be adjusted independently.

Land deformation in Saint Louis, Missouri measured by ALOS InSAR and PolINSAR validated with DGPS base stations

NASA Astrophysics Data System (ADS)

Ghulam, A.

2011-12-01

DInSAR is a solid technique to estimate land subsidence and rebound using phase information from multiple SAR acquisitions over the same location from the same orbits, but from a slightly different observing geometry. However, temporal decorrelation and atmospheric effects are often a challenge to the accuracy of the DInSAR measurements. Such uncertainties may be overcome using time series interferogram stacking, e.g., permanent scatterer interferometry (Ferretti, et al., 2000, 2001). However, it requires large number of image collections. In this paper, interferometric synthetic aperture radar (InSAR) data pairs from the Phased Array type L-band Synthetic Aperture Radar (PALSAR) sensor onboard Advanced Land Observing Satellite (ALOS) are used to measure seasonal and annual land surface deformation over Saint Louis, Missouri. The datasets cover four years of time period spanning from 2006 to 2010. With the limited data coverage that is not suitable for permanent scatterer interferometry, the paper demonstrates the efficacy of dual pair interferometry from both fine-beam single polarization mode and dual-pol polarimetric images and short baseline interferometry (SBAS) approach (Berardino, et al., 2002) with an estimation accuracy comparable to differential global position systems (DGPS). We also present the impact of using assumed phase-stable ground control points versus GPS base stations for orbital refinement and phase unwrapping on overall measurement accuracy by comparing the deformation results from DInSAR and Polarimetric InSAR with DGPS base stations and ground truthing.

3D fingerprint analysis using transmission-mode multi-wavelength digital holographic topography

NASA Astrophysics Data System (ADS)

Abeywickrema, Ujitha; Banerjee, Partha; Kota, Akash; Lakhtakia, Akhlesh; Swiontek, Stephen E.

2016-03-01

The analysis of fingerprints is important for biometric identification. Two-wavelength digital holographic interferometry is used to study the topography of various types of fingerprints. This topography depends on several conditions such as the temperature, time of the day, and the proportions of eccrine and sebaceous sweat. With two-wavelength holographic interferometry, surface information can be measured with a better accuracy compared to single-wavelength phase-retrieving techniques. Latent fingerprints on transparent glass, a forensically relevant substrate are first developed by the deposition of 50-1000-nm-thick columnar thin films, and then analyzed using the transmission-mode two-wavelength digital holographic technique. In this technique, a tunable Argon-ion laser (457.9 nm to 514.5 nm) is used and holograms are recorded on a CCD camera sequentially for several sets of two wavelengths. Then the phase is reconstructed for each wavelength, and the phase difference which corresponds to the synthetic wavelength (4 μm to 48 μm) is calculated. Finally, the topography is obtained by applying proper phase-unwrapping techniques to the phase difference. Interferometric setups that utilize light reflected from the surface of interest have several disadvantages such as the effect of multiple reflections as well as the effects of the tilt of the object and its shadow (for the Mach-Zehnder configuration). To overcome these drawbacks, digital holograms of fingerprints in a transmission geometry are used. An approximately in-line geometry employing a slightly tilted reference beam to facilitate separation of various diffraction orders during holographic reconstruction is employed.

Canceling the momentum in a phase-shifting algorithm to eliminate spatially uniform errors.

PubMed

Hibino, Kenichi; Kim, Yangjin

2016-08-10

In phase-shifting interferometry, phase modulation nonlinearity causes both spatially uniform and nonuniform errors in the measured phase. Conventional linear-detuning error-compensating algorithms only eliminate the spatially variable error component. The uniform error is proportional to the inertial momentum of the data-sampling weight of a phase-shifting algorithm. This paper proposes a design approach to cancel the momentum by using characteristic polynomials in the Z-transform space and shows that an arbitrary M-frame algorithm can be modified to a new (M+2)-frame algorithm that acquires new symmetry to eliminate the uniform error.

Development of an algorithm for controlling a multilevel three-phase converter

NASA Astrophysics Data System (ADS)

Taissariyeva, Kyrmyzy; Ilipbaeva, Lyazzat

2017-08-01

This work is devoted to the development of an algorithm for controlling transistors in a three-phase multilevel conversion system. The developed algorithm allows to organize a correct operation and describes the state of transistors at each moment of time when constructing a computer model of a three-phase multilevel converter. The developed algorithm of operation of transistors provides in-phase of a three-phase converter and obtaining a sinusoidal voltage curve at the converter output.

Sex and Candy: Unwrapping How We Define Sexuality

ERIC Educational Resources Information Center

Ott, Kate

2016-01-01

When seeking a more nuanced understanding of sexuality, participants can benefit from hands-on activities that provide experience with the limitation of descriptors and social shaping of definitions. In many sexuality education contexts, participants enter the learning environment with a narrow definition of sexuality. The following game provides…

Laser-scanning techniques for rapid ballistics identification

NASA Technical Reports Server (NTRS)

Woodburgy, R. C.; Nakich, R. B.

1974-01-01

Two different laser-scanning methods may be utilized. In each case scanned cylindrical bullet surface is displayed ""unwrapped'' on oscilloscope screen. Bullets are compared by photographing each display and superimposing negatives of two images. With some modifications bullets can be scanned and compared by superimposing images on screen of dual-beam oscilloscope.

Discovering and Constructing Our Identities: Reading "The Favorite Daughter"

ERIC Educational Resources Information Center

Elijah, Rosebud

2014-01-01

For everyone--children, parents, teachers--who have experienced instances in their lives where they have been teased, alienated, isolated, shunned, Allen Say gives us the beautifully illustrated book "The Favorite Daughter." In this book (a Notable Social Studies Trade Book for 2013), author and illustrator Say wraps and unwraps issues…

Commentary: The American Tradition of Inequality: Neighborhoods and Schools

ERIC Educational Resources Information Center

Lareau, Annette; Jo, Hyejeong

2017-01-01

This article is a commentary on "Unwrapping the Suburban "Package Deal": Race, Class, and School Access," by Anna Rhodes and Siri Warkentien. Although guided by powerful ideals of equal opportunity, American schools are deeply unequal. As historians of education have taught, children of different racial, ethnic, and class…

40 CFR Table 4 to Subpart Wwww of... - Work Practice Standards

Code of Federal Regulations, 2010 CFR

2010-07-01

.... a new or existing closed molding operation using compression/injection molding uncover, unwrap or... new or existing cleaning operation not use cleaning solvents that contain HAP, except that styrene may... contacts resin. 3. a new or existing materials HAP-containing materials storage operation keep containers...

An efficient algorithm for automatic phase correction of NMR spectra based on entropy minimization

NASA Astrophysics Data System (ADS)

Chen, Li; Weng, Zhiqiang; Goh, LaiYoong; Garland, Marc

2002-09-01

A new algorithm for automatic phase correction of NMR spectra based on entropy minimization is proposed. The optimal zero-order and first-order phase corrections for a NMR spectrum are determined by minimizing entropy. The objective function is constructed using a Shannon-type information entropy measure. Entropy is defined as the normalized derivative of the NMR spectral data. The algorithm has been successfully applied to experimental 1H NMR spectra. The results of automatic phase correction are found to be comparable to, or perhaps better than, manual phase correction. The advantages of this automatic phase correction algorithm include its simple mathematical basis and the straightforward, reproducible, and efficient optimization procedure. The algorithm is implemented in the Matlab program ACME—Automated phase Correction based on Minimization of Entropy.

Self-localization for an autonomous mobile robot based on an omni-directional vision system

NASA Astrophysics Data System (ADS)

Chiang, Shu-Yin; Lin, Kuang-Yu; Chia, Tsorng-Lin

2013-12-01

In this study, we designed an autonomous mobile robot based on the rules of the Federation of International Robotsoccer Association (FIRA) RoboSot category, integrating the techniques of computer vision, real-time image processing, dynamic target tracking, wireless communication, self-localization, motion control, path planning, and control strategy to achieve the contest goal. The self-localization scheme of the mobile robot is based on the algorithms featured in the images from its omni-directional vision system. In previous works, we used the image colors of the field goals as reference points, combining either dual-circle or trilateration positioning of the reference points to achieve selflocalization of the autonomous mobile robot. However, because the image of the game field is easily affected by ambient light, positioning systems exclusively based on color model algorithms cause errors. To reduce environmental effects and achieve the self-localization of the robot, the proposed algorithm is applied in assessing the corners of field lines by using an omni-directional vision system. Particularly in the mid-size league of the RobotCup soccer competition, selflocalization algorithms based on extracting white lines from the soccer field have become increasingly popular. Moreover, white lines are less influenced by light than are the color model of the goals. Therefore, we propose an algorithm that transforms the omni-directional image into an unwrapped transformed image, enhancing the extraction features. The process is described as follows: First, radical scan-lines were used to process omni-directional images, reducing the computational load and improving system efficiency. The lines were radically arranged around the center of the omni-directional camera image, resulting in a shorter computational time compared with the traditional Cartesian coordinate system. However, the omni-directional image is a distorted image, which makes it difficult to recognize the position of the robot. Therefore, image transformation was required to implement self-localization. Second, we used an approach to transform the omni-directional images into panoramic images. Hence, the distortion of the white line can be fixed through the transformation. The interest points that form the corners of the landmark were then located using the features from accelerated segment test (FAST) algorithm. In this algorithm, a circle of sixteen pixels surrounding the corner candidate is considered and is a high-speed feature detector in real-time frame rate applications. Finally, the dual-circle, trilateration, and cross-ratio projection algorithms were implemented in choosing the corners obtained from the FAST algorithm and localizing the position of the robot. The results demonstrate that the proposed algorithm is accurate, exhibiting a 2-cm position error in the soccer field measuring 600 cm2 x 400 cm2.

Evaluating the utility of syndromic surveillance algorithms for screening to detect potentially clonal hospital infection outbreaks

PubMed Central

Talbot, Thomas R; Schaffner, William; Bloch, Karen C; Daniels, Titus L; Miller, Randolph A

2011-01-01

Objective The authors evaluated algorithms commonly used in syndromic surveillance for use as screening tools to detect potentially clonal outbreaks for review by infection control practitioners. Design Study phase 1 applied four aberrancy detection algorithms (CUSUM, EWMA, space-time scan statistic, and WSARE) to retrospective microbiologic culture data, producing a list of past candidate outbreak clusters. In phase 2, four infectious disease physicians categorized the phase 1 algorithm-identified clusters to ascertain algorithm performance. In phase 3, project members combined the algorithms to create a unified screening system and conducted a retrospective pilot evaluation. Measurements The study calculated recall and precision for each algorithm, and created precision-recall curves for various methods of combining the algorithms into a unified screening tool. Results Individual algorithm recall and precision ranged from 0.21 to 0.31 and from 0.053 to 0.29, respectively. Few candidate outbreak clusters were identified by more than one algorithm. The best method of combining the algorithms yielded an area under the precision-recall curve of 0.553. The phase 3 combined system detected all infection control-confirmed outbreaks during the retrospective evaluation period. Limitations Lack of phase 2 reviewers' agreement indicates that subjective expert review was an imperfect gold standard. Less conservative filtering of culture results and alternate parameter selection for each algorithm might have improved algorithm performance. Conclusion Hospital outbreak detection presents different challenges than traditional syndromic surveillance. Nevertheless, algorithms developed for syndromic surveillance have potential to form the basis of a combined system that might perform clinically useful hospital outbreak screening. PMID:21606134

40 CFR Table 9 to Subpart Wwww of... - Initial Compliance With Work Practice Standards

Code of Federal Regulations, 2014 CFR

2014-07-01

... compression/injection molding uncover, unwrap or expose only one charge per mold cycle per compression/injection molding machine. For machines with multiple molds, one charge means sufficient material to fill... cycle per compression/injection molding machine, or prior to the loader, hoppers are closed except when...

Unwrapping the Bundle: An Examination of Research Libraries and the "Big Deal"

ERIC Educational Resources Information Center

Strieb, Karla L.; Blixrud, Julia C.

2014-01-01

This study presents and analyzes the findings of a 2012 survey of member libraries belonging to the Association of Research Libraries (ARL) about publishers' large journal bundles and compares the results to earlier surveys. The data illuminate five research questions: market penetration, journal bundle construction, collection format shifts,…

Unwrapping the Suburban "Package Deal": Race, Class, and School Access

ERIC Educational Resources Information Center

Rhodes, Anna; Warkentien, Siri

2017-01-01

Large disparities in educational quality exist between cities and surrounding suburban school districts and are increasing between suburban districts--a trend that emerged over the past several decades and shows signs of growing. Using in-depth interviews, this study examines how children are sorted into different school districts across a…

DOE Office of Scientific and Technical Information (OSTI.GOV)

Soliman, A; Safigholi, H; Sunnybrook Health Sciences Center, Toronto, ON

Purpose: To propose a new method that provides a positive contrast visualization of the prostate brachytherapy seeds using the phase information from MR images. Additionally, the feasibility of using the processed phase information to distinguish seeds from calcifications is explored. Methods: A gel phantom was constructed using 2% agar dissolved in 1 L of distilled water. Contrast agents were added to adjust the relaxation times. Four iodine-125 (Eckert & Ziegler SML86999) dummy seeds were placed at different orientations with respect to the main magnetic field (B0). Calcifications were obtained from a sheep femur cortical bone due to its close similaritymore » to human bone tissue composition. Five samples of calcifications were shaped into different dimensions with lengths ranging between 1.2 – 6.1 mm.MR imaging was performed on a 3T Philips Achieva using an 8-channel head coil. Eight images were acquired at eight echo-times using a multi-gradient echo sequence. Spatial resolution was 0.7 × 0.7 × 2 mm, TR/TE/dTE = 20.0/2.3/2.3 ms and BW = 541 Hz/pixel. Complex images were acquired and fed into a two-step processing pipeline: the first includes phase unwrapping and background phase removal using Laplacian operator (Wei et al. 2013). The second step applies a specific phase mask on the resulting tissue phase from the first step to provide the desired positive contrast of the seeds and to, potentially, differentiate them from the calcifications. Results: The phase-processing was performed in less than 30 seconds. The proposed method has successfully resulted in a positive contrast of the brachytherapy seeds. Additionally, the final processed phase image showed difference between the appearance of seeds and calcifications. However, the shape of the seeds was slightly distorted compared to the original dimensions. Conclusion: It is feasible to provide a positive contrast of the seeds from MR images using Laplacian operator-based phase processing.« less

3D models mapping optimization through an integrated parameterization approach: cases studies from Ravenna

NASA Astrophysics Data System (ADS)

Cipriani, L.; Fantini, F.; Bertacchi, S.

2014-06-01

Image-based modelling tools based on SfM algorithms gained great popularity since several software houses provided applications able to achieve 3D textured models easily and automatically. The aim of this paper is to point out the importance of controlling models parameterization process, considering that automatic solutions included in these modelling tools can produce poor results in terms of texture utilization. In order to achieve a better quality of textured models from image-based modelling applications, this research presents a series of practical strategies aimed at providing a better balance between geometric resolution of models from passive sensors and their corresponding (u,v) map reference systems. This aspect is essential for the achievement of a high-quality 3D representation, since "apparent colour" is a fundamental aspect in the field of Cultural Heritage documentation. Complex meshes without native parameterization have to be "flatten" or "unwrapped" in the (u,v) parameter space, with the main objective to be mapped with a single image. This result can be obtained by using two different strategies: the former automatic and faster, while the latter manual and time-consuming. Reverse modelling applications provide automatic solutions based on splitting the models by means of different algorithms, that produce a sort of "atlas" of the original model in the parameter space, in many instances not adequate and negatively affecting the overall quality of representation. Using in synergy different solutions, ranging from semantic aware modelling techniques to quad-dominant meshes achieved using retopology tools, it is possible to obtain a complete control of the parameterization process.

Accurate identification of microseismic P- and S-phase arrivals using the multi-step AIC algorithm

NASA Astrophysics Data System (ADS)

Zhu, Mengbo; Wang, Liguan; Liu, Xiaoming; Zhao, Jiaxuan; Peng, Ping'an

2018-03-01

Identification of P- and S-phase arrivals is the primary work in microseismic monitoring. In this study, a new multi-step AIC algorithm is proposed. This algorithm consists of P- and S-phase arrival pickers (P-picker and S-picker). The P-picker contains three steps: in step 1, a preliminary P-phase arrival window is determined by the waveform peak. Then a preliminary P-pick is identified using the AIC algorithm. Finally, the P-phase arrival window is narrowed based on the above P-pick. Thus the P-phase arrival can be identified accurately by using the AIC algorithm again. The S-picker contains five steps: in step 1, a narrow S-phase arrival window is determined based on the P-pick and the AIC curve of amplitude biquadratic time-series. In step 2, the S-picker automatically judges whether the S-phase arrival is clear to identify. In step 3 and 4, the AIC extreme points are extracted, and the relationship between the local minimum and the S-phase arrival is researched. In step 5, the S-phase arrival is picked based on the maximum probability criterion. To evaluate of the proposed algorithm, a P- and S-picks classification criterion is also established based on a source location numerical simulation. The field data tests show a considerable improvement of the multi-step AIC algorithm in comparison with the manual picks and the original AIC algorithm. Furthermore, the technique is independent of the kind of SNR. Even in the poor-quality signal group which the SNRs are below 5, the effective picking rates (the corresponding location error is <15 m) of P- and S-phase arrivals are still up to 80.9% and 76.4% respectively.

A dynamic monitoring approach for the surface morphology evolution measurement of plasma facing components by means of speckle interferometry

NASA Astrophysics Data System (ADS)

Wang, Hongbei; Cui, Xiaoqian; Feng, Chunlei; Li, Yuanbo; Zhao, Mengge; Luo, Guangnan; Ding, Hongbin

2017-11-01

Plasma Facing Components (PFCs) in a magnetically confined fusion plasma device will be exposed to high heat load and particle fluxes, and it would cause PFCs' surface morphology to change due to material erosion and redeposition from plasma wall interactions. The state of PFCs' surface condition will seriously affect the performance of long-pulse or steady state plasma discharge in a tokamak; it will even constitute an enormous threat to the operation and the safety of fusion plasma devices. The PFCs' surface morphology evolution measurement could provide important information about PFCs' real-time status or damage situation and it would help to a better understanding of the plasma wall interaction process and mechanism. Meanwhile through monitoring the distribution of dust deposition in a tokamak and providing an upper limit on the amount of loose dust, the PFCs' surface morphology measurement could indirectly contribute to keep fusion operational limits and fusion device safety. Aiming at in situ dynamic monitoring PFCs' surface morphology evolution, a laboratory experimental platform DUT-SIEP (Dalian University of Technology-speckle interferometry experimental platform) based on the speckle interferometry technique has been constructed at Dalian University of Technology (DUT) in China. With directional specific designing and focusing on the real detection condition of EAST (Experimental Advanced Superconducting Tokamak), the DUT-SIEP could realize a variable measurement range, widely increased from 0.1 μm to 300 μm, with high spatial resolution (<1 mm) and ultra-high time resolution (<2 s for EAST measuring conditions). Three main components of the DUT-SIEP are all integrated and synchronized by a time schedule control and data acquisition terminal and coupled with a three-dimensional phase unwrapping algorithm, the surface morphology information of target samples can be obtained and reconstructed in real-time. A local surface morphology of the real divertor tiles adopted from EAST has been measured, and the feasibility and reliability of this new experimental platform have been demonstrated.

A Two-Phase Time Synchronization-Free Localization Algorithm for Underwater Sensor Networks.

PubMed

Luo, Junhai; Fan, Liying

2017-03-30

Underwater Sensor Networks (UWSNs) can enable a broad range of applications such as resource monitoring, disaster prevention, and navigation-assistance. Sensor nodes location in UWSNs is an especially relevant topic. Global Positioning System (GPS) information is not suitable for use in UWSNs because of the underwater propagation problems. Hence, some localization algorithms based on the precise time synchronization between sensor nodes that have been proposed for UWSNs are not feasible. In this paper, we propose a localization algorithm called Two-Phase Time Synchronization-Free Localization Algorithm (TP-TSFLA). TP-TSFLA contains two phases, namely, range-based estimation phase and range-free evaluation phase. In the first phase, we address a time synchronization-free localization scheme based on the Particle Swarm Optimization (PSO) algorithm to obtain the coordinates of the unknown sensor nodes. In the second phase, we propose a Circle-based Range-Free Localization Algorithm (CRFLA) to locate the unlocalized sensor nodes which cannot obtain the location information through the first phase. In the second phase, sensor nodes which are localized in the first phase act as the new anchor nodes to help realize localization. Hence, in this algorithm, we use a small number of mobile beacons to help obtain the location information without any other anchor nodes. Besides, to improve the precision of the range-free method, an extension of CRFLA achieved by designing a coordinate adjustment scheme is updated. The simulation results show that TP-TSFLA can achieve a relative high localization ratio without time synchronization.

A Two-Phase Time Synchronization-Free Localization Algorithm for Underwater Sensor Networks

PubMed Central

Luo, Junhai; Fan, Liying

2017-01-01

Underwater Sensor Networks (UWSNs) can enable a broad range of applications such as resource monitoring, disaster prevention, and navigation-assistance. Sensor nodes location in UWSNs is an especially relevant topic. Global Positioning System (GPS) information is not suitable for use in UWSNs because of the underwater propagation problems. Hence, some localization algorithms based on the precise time synchronization between sensor nodes that have been proposed for UWSNs are not feasible. In this paper, we propose a localization algorithm called Two-Phase Time Synchronization-Free Localization Algorithm (TP-TSFLA). TP-TSFLA contains two phases, namely, range-based estimation phase and range-free evaluation phase. In the first phase, we address a time synchronization-free localization scheme based on the Particle Swarm Optimization (PSO) algorithm to obtain the coordinates of the unknown sensor nodes. In the second phase, we propose a Circle-based Range-Free Localization Algorithm (CRFLA) to locate the unlocalized sensor nodes which cannot obtain the location information through the first phase. In the second phase, sensor nodes which are localized in the first phase act as the new anchor nodes to help realize localization. Hence, in this algorithm, we use a small number of mobile beacons to help obtain the location information without any other anchor nodes. Besides, to improve the precision of the range-free method, an extension of CRFLA achieved by designing a coordinate adjustment scheme is updated. The simulation results show that TP-TSFLA can achieve a relative high localization ratio without time synchronization. PMID:28358342

Fringe pattern demodulation with a two-frame digital phase-locked loop algorithm.

PubMed

Gdeisat, Munther A; Burton, David R; Lalor, Michael J

2002-09-10

A novel technique called a two-frame digital phase-locked loop for fringe pattern demodulation is presented. In this scheme, two fringe patterns with different spatial carrier frequencies are grabbed for an object. A digital phase-locked loop algorithm tracks and demodulates the phase difference between both fringe patterns by employing the wrapped phase components of one of the fringe patterns as a reference to demodulate the second fringe pattern. The desired phase information can be extracted from the demodulated phase difference. We tested the algorithm experimentally using real fringe patterns. The technique is shown to be suitable for noncontact measurement of objects with rapid surface variations, and it outperforms the Fourier fringe analysis technique in this aspect. Phase maps produced withthis algorithm are noisy in comparison with phase maps generated with the Fourier fringe analysis technique.

ASR-9 processor augmentation card (9-PAC) phase II scan-scan correlator algorithms

DOT National Transportation Integrated Search

2001-04-26

The report documents the scan-scan correlator (tracker) algorithm developed for Phase II of the ASR-9 Processor Augmentation Card (9-PAC) project. The improved correlation and tracking algorithms in 9-PAC Phase II decrease the incidence of false-alar...

Phase Retrieval from Modulus Using Homeomorphic Signal Processing and the Complex Cepstrum: An Algorithm for Lightning Protection Systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Clark, G A

2004-06-08

In general, the Phase Retrieval from Modulus problem is very difficult. In this report, we solve the difficult, but somewhat more tractable case in which we constrain the solution to a minimum phase reconstruction. We exploit the real-and imaginary part sufficiency properties of the Fourier and Hilbert Transforms of causal sequences to develop an algorithm for reconstructing spectral phase given only spectral modulus. The algorithm uses homeomorphic signal processing methods with the complex cepstrum. The formal problem of interest is: Given measurements of only the modulus {vert_bar}H(k){vert_bar} (no phase) of the Discrete Fourier Transform (DFT) of a real, finite-length, stable,more » causal time domain signal h(n), compute a minimum phase reconstruction {cflx h}(n) of the signal. Then compute the phase of {cflx h}(n) using a DFT, and exploit the result as an estimate of the phase of h(n). The development of the algorithm is quite involved, but the final algorithm and its implementation are very simple. This work was motivated by a Phase Retrieval from Modulus Problem that arose in LLNL Defense Sciences Engineering Division (DSED) projects in lightning protection for buildings. The measurements are limited to modulus-only spectra from a spectrum analyzer. However, it is desired to perform system identification on the building to compute impulse responses and transfer functions that describe the amount of lightning energy that will be transferred from the outside of the building to the inside. This calculation requires knowledge of the entire signals (both modulus and phase). The algorithm and software described in this report are proposed as an approach to phase retrieval that can be used for programmatic needs. This report presents a brief tutorial description of the mathematical problem and the derivation of the phase retrieval algorithm. The efficacy of the theory is demonstrated using simulated signals that meet the assumptions of the algorithm. We see that for the noiseless case, the reconstructions are extremely accurate. When moderate to heavy simulated white Gaussian noise was added, the algorithm performance remained reasonably robust, especially in the low frequency part of the spectrum, which is the part of most interest for lightning protection. Limitations of the algorithm include the following: (1) It does not account for noise in the given spectral modulus. Fortunately, the lightning protection signals of interest generally have a reasonably high signal-to-noise ratio (SNR). (2) The DFT length N must be even and larger than the length of the nonzero part of the measured signals. These constraints are simple to meet in practice. (3) Regardless of the properties of the actual signal h(n), the phase retrieval results are constrained to have the minimum phase property. In most problems of practical interest, these assumptions are very reasonable and probably valid. They are reasonable assumptions for Lightning Protection applications. Proposed future work includes (a) Evaluating the efficacy of the algorithm with real Lightning Protection signals from programmatic applications, (b) Performing a more rigorous analysis of noise effects, (c) Using the algorithm along with advanced system identification algorithms to estimate impulse responses and transfer functions, (d) Developing algorithms to deal with measured partial (truncated) spectral moduli, and (e) R & D of phase retrieval algorithms that specifically deal with general (not necessarily minimum phase) signals, and noisy spectral moduli.« less

Large-mirror testing facility at the National Optical Astronomy Observatories

NASA Astrophysics Data System (ADS)

Coudé du Foresto, V.; Fox, J.; Poczulp, G. A.; Richardson, J.; Roddier, Claude; Roddier, Francois; Barr, L. D.

1991-09-01

A method for testing the surfaces of large mirrors has been developed to be used even when conditions of vibration and thermal turbulence in the light path cannot be eliminated. The full aperture of the mirror under test is examined by means of a scatterplate interferometer that has the property of being a quasi-common-path method, although any means for obtaining interference fringes can be used. By operating the test equipment remotely, the optician does not cause unnecessary vibrations or heat in the testing area. The typical test is done with a camera exposure of about a millisecond to 'freeze' the fringe pattern on the detector. Averaging up to 10 separate exposures effectively eliminates the turbulence effects. From the intensity information, a phase map of the wavefront reflected from the surface is obtained using a phase-unwrapping technique. The method provides the optician with complete numerical information and visual plots for the surface under test and the diffracted image the method will produce to an accuracy of 0.01 micron measured peak-to-valley. The method has been extensively used for a variety of test of a 1.8-m-diam borosilicate-glass honeycomb mirror, where the method was shown to have a sensitivity equal to a Foucault test.

Interferometric detection of freeze-thaw displacements of Alaskan permafrost using ERS-1 data

NASA Technical Reports Server (NTRS)

Werner, Charles L.; Gabriel, Andrew K.

1993-01-01

The possibility of making large scale (50 km) measurements of motions of the earth's surface with high resolution (10 m) and very high accuracy (1 cm) from multipass SAR interferometry was established in 1989. Other experiments have confirmed the viability and usefulness of the method. Work is underway in various groups to measure displacements from volcanic activity, seismic events, glacier motion, and in the present study, freeze-thaw cycles in Alaskan permafrost. The ground is known to move significantly in these cycles, and provided that freezing does not cause image decorrelation, it should be possible to measure both ground swelling and subsidence. The authors have obtained data from multiple passes of ERS-1 over the Toolik Lake region of northern Alaska of suitable quality for interferometry. The data are processed into images, and single interferograms are formed in the usual manner. Phase unwrapping is performed, and the multipass baselines are estimated from the images using both orbit ephemerides and scene tie points. The phases are scaled by the baseline ratio, and a double-difference interferogram (DDI) is formed. It is found that there is a residual 'saddle-shape' phase error across the image, which is postulated to be caused by a small divergence (10(exp -2) deg.) in the orbits. A simulation of a DDI from divergent orbits confirms the shape and magnitude of the error. A two-dimensional least squares fit to the error is performed, which is used to correct the DDI. The final, corrected DDI shows significant phase (altitude) changes over the period of the observation.

On the Effectiveness of Nature-Inspired Metaheuristic Algorithms for Performing Phase Equilibrium Thermodynamic Calculations

PubMed Central

Fateen, Seif-Eddeen K.; Bonilla-Petriciolet, Adrian

2014-01-01

The search for reliable and efficient global optimization algorithms for solving phase stability and phase equilibrium problems in applied thermodynamics is an ongoing area of research. In this study, we evaluated and compared the reliability and efficiency of eight selected nature-inspired metaheuristic algorithms for solving difficult phase stability and phase equilibrium problems. These algorithms are the cuckoo search (CS), intelligent firefly (IFA), bat (BA), artificial bee colony (ABC), MAKHA, a hybrid between monkey algorithm and krill herd algorithm, covariance matrix adaptation evolution strategy (CMAES), magnetic charged system search (MCSS), and bare bones particle swarm optimization (BBPSO). The results clearly showed that CS is the most reliable of all methods as it successfully solved all thermodynamic problems tested in this study. CS proved to be a promising nature-inspired optimization method to perform applied thermodynamic calculations for process design. PMID:24967430

On the effectiveness of nature-inspired metaheuristic algorithms for performing phase equilibrium thermodynamic calculations.

PubMed

Fateen, Seif-Eddeen K; Bonilla-Petriciolet, Adrian

2014-01-01

The search for reliable and efficient global optimization algorithms for solving phase stability and phase equilibrium problems in applied thermodynamics is an ongoing area of research. In this study, we evaluated and compared the reliability and efficiency of eight selected nature-inspired metaheuristic algorithms for solving difficult phase stability and phase equilibrium problems. These algorithms are the cuckoo search (CS), intelligent firefly (IFA), bat (BA), artificial bee colony (ABC), MAKHA, a hybrid between monkey algorithm and krill herd algorithm, covariance matrix adaptation evolution strategy (CMAES), magnetic charged system search (MCSS), and bare bones particle swarm optimization (BBPSO). The results clearly showed that CS is the most reliable of all methods as it successfully solved all thermodynamic problems tested in this study. CS proved to be a promising nature-inspired optimization method to perform applied thermodynamic calculations for process design.

SOTXTSTREAM: Density-based self-organizing clustering of text streams.

PubMed

Bryant, Avory C; Cios, Krzysztof J

2017-01-01

A streaming data clustering algorithm is presented building upon the density-based self-organizing stream clustering algorithm SOSTREAM. Many density-based clustering algorithms are limited by their inability to identify clusters with heterogeneous density. SOSTREAM addresses this limitation through the use of local (nearest neighbor-based) density determinations. Additionally, many stream clustering algorithms use a two-phase clustering approach. In the first phase, a micro-clustering solution is maintained online, while in the second phase, the micro-clustering solution is clustered offline to produce a macro solution. By performing self-organization techniques on micro-clusters in the online phase, SOSTREAM is able to maintain a macro clustering solution in a single phase. Leveraging concepts from SOSTREAM, a new density-based self-organizing text stream clustering algorithm, SOTXTSTREAM, is presented that addresses several shortcomings of SOSTREAM. Gains in clustering performance of this new algorithm are demonstrated on several real-world text stream datasets.

Wiener filter preprocessing for OFDM systems in the presence of both nonstationary and stationary phase noises

NASA Astrophysics Data System (ADS)

Zhong, Ke; Lei, Xia; Li, Shaoqian

2013-12-01

Statistics-based intercarrier interference (ICI) mitigation algorithm is proposed for orthogonal frequency division multiplexing systems in presence of both nonstationary and stationary phase noises. By utilizing the statistics of phase noise, which can be obtained from measurements or data sheets, a Wiener filter preprocessing algorithm for ICI mitigation is proposed. The proposed algorithm can be regarded as a performance-improving technique for the previous researches on phase noise cancelation. Simulation results show that the proposed algorithm can effectively mitigate ICI and lower the error floor, and therefore significantly improve the performances of previous researches on phase noise cancelation, especially in the presence of severe phase noise.

Swept-source based, single-shot, multi-detectable velocity range Doppler optical coherence tomography

PubMed Central

Meemon, Panomsak; Rolland, Jannick P.

2010-01-01

Phase-Resolved Doppler Optical Coherence Tomography (PR-DOCT) allows visualization and characterization of the location, direction, velocity, and profile of flow activity embedded in a static sample structure. The detectable Velocity Dynamic Range (VDR) of each particular PR-DOCT system is governed by a detectable Doppler phase shift, a flow angle, and an acquisition time interval used to determine the Doppler phase shift. In general, the lower boundary of the detectable Doppler phase shift is limited by the phase stability of the system, while the upper boundary is limited by the π phase ambiguity. For a given range of detectable Doppler phase shift, shortening the acquisition duration will increase not only the maximum detectable velocity but unfortunately also the minimum detectable velocity, which may lead to the invisibility of a slow flow. In this paper, we present an alternative acquisition scheme for PR-DOCT that extends the lower limit of the velocity dynamic range, while maintaining the maximum detectable velocity, hence increasing the overall VDR of PR-DOCT system. The essence of the approach is to implement a technique of multi-scale measurement to simultaneously acquire multiple VDRs in a single measurement. We demonstrate an example of implementation of the technique in a dual VDR DOCT, where two Doppler maps having different detectable VDRs were simultaneously detected, processed, and displayed in real time. One was a fixed VDR DOCT capable of measuring axial velocity of up to 10.9 mm/s without phase unwrapping. The other was a variable VDR DOCT capable of adjusting its detectable VDR to reveal slow flow information down to 11.3 μm/s. The technique is shown to effectively extend the overall detectable VDR of the PR-DOCT system. Examples of real time Doppler imaging of an African frog tadpole are demonstrated using the dual-VDR DOCT system. PMID:21258521

Wavelet-based group and phase velocity measurements: Method

NASA Astrophysics Data System (ADS)

Yang, H. Y.; Wang, W. W.; Hung, S. H.

2016-12-01

Measurements of group and phase velocities of surface waves are often carried out by applying a series of narrow bandpass or stationary Gaussian filters localized at specific frequencies to wave packets and estimating the corresponding arrival times at the peak envelopes and phases of the Fourier spectra. However, it's known that seismic waves are inherently nonstationary and not well represented by a sum of sinusoids. Alternatively, a continuous wavelet transform (CWT) which decomposes a time series into a family of wavelets, translated and scaled copies of a generally fast oscillating and decaying function known as the mother wavelet, is capable of retaining localization in both the time and frequency domain and well-suited for the time-frequency analysis of nonstationary signals. Here we develop a wavelet-based method to measure frequency-dependent group and phase velocities, an essential dataset used in crust and mantle tomography. For a given time series, we employ the complex morlet wavelet to obtain the scalogram of amplitude modulus |Wg| and phase φ on the time-frequency plane. The instantaneous frequency (IF) is then calculated by taking the derivative of phase with respect to time, i.e., (1/2π)dφ(f, t)/dt. Time windows comprising strong energy arrivals to be measured can be identified by those IFs close to the frequencies with the maximum modulus and varying smoothly and monotonically with time. The respective IFs in each selected time window are further interpolated to yield a smooth branch of ridge points or representative IFs at which the arrival time, tridge(f), and phase, φridge(f), after unwrapping and correcting cycle skipping based on a priori knowledge of the possible velocity range, are determined for group and phase velocity estimation. We will demonstrate our measurement method using both ambient noise cross correlation functions and multi-mode surface waves from earthquakes. The obtained dispersion curves will be compared with those by a conventional narrow bandpass method.

Automated quantitative 3D analysis of aorta size, morphology, and mural calcification distributions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kurugol, Sila, E-mail: sila.kurugol@childrens.harvard.edu; Come, Carolyn E.; Diaz, Alejandro A.

Purpose: The purpose of this work is to develop a fully automated pipeline to compute aorta morphology and calcification measures in large cohorts of CT scans that can be used to investigate the potential of these measures as imaging biomarkers of cardiovascular disease. Methods: The first step of the automated pipeline is aorta segmentation. The algorithm the authors propose first detects an initial aorta boundary by exploiting cross-sectional circularity of aorta in axial slices and aortic arch in reformatted oblique slices. This boundary is then refined by a 3D level-set segmentation that evolves the boundary to the location of nearbymore » edges. The authors then detect the aortic calcifications with thresholding and filter out the false positive regions due to nearby high intensity structures based on their anatomical location. The authors extract the centerline and oblique cross sections of the segmented aortas and compute the aorta morphology and calcification measures of the first 2500 subjects from COPDGene study. These measures include volume and number of calcified plaques and measures of vessel morphology such as average cross-sectional area, tortuosity, and arch width. Results: The authors computed the agreement between the algorithm and expert segmentations on 45 CT scans and obtained a closest point mean error of 0.62 ± 0.09 mm and a Dice coefficient of 0.92 ± 0.01. The calcification detection algorithm resulted in an improved true positive detection rate of 0.96 compared to previous work. The measurements of aorta size agreed with the measurements reported in previous work. The initial results showed associations of aorta morphology with calcification and with aging. These results may indicate aorta stiffening and unwrapping with calcification and aging. Conclusions: The authors have developed an objective tool to assess aorta morphology and aortic calcium plaques on CT scans that may be used to provide information about the presence of cardiovascular disease and its clinical impact in smokers.« less

Automated quantitative 3D analysis of aorta size, morphology, and mural calcification distributions.

PubMed

Kurugol, Sila; Come, Carolyn E; Diaz, Alejandro A; Ross, James C; Kinney, Greg L; Black-Shinn, Jennifer L; Hokanson, John E; Budoff, Matthew J; Washko, George R; San Jose Estepar, Raul

2015-09-01

The purpose of this work is to develop a fully automated pipeline to compute aorta morphology and calcification measures in large cohorts of CT scans that can be used to investigate the potential of these measures as imaging biomarkers of cardiovascular disease. The first step of the automated pipeline is aorta segmentation. The algorithm the authors propose first detects an initial aorta boundary by exploiting cross-sectional circularity of aorta in axial slices and aortic arch in reformatted oblique slices. This boundary is then refined by a 3D level-set segmentation that evolves the boundary to the location of nearby edges. The authors then detect the aortic calcifications with thresholding and filter out the false positive regions due to nearby high intensity structures based on their anatomical location. The authors extract the centerline and oblique cross sections of the segmented aortas and compute the aorta morphology and calcification measures of the first 2500 subjects from COPDGene study. These measures include volume and number of calcified plaques and measures of vessel morphology such as average cross-sectional area, tortuosity, and arch width. The authors computed the agreement between the algorithm and expert segmentations on 45 CT scans and obtained a closest point mean error of 0.62 ± 0.09 mm and a Dice coefficient of 0.92 ± 0.01. The calcification detection algorithm resulted in an improved true positive detection rate of 0.96 compared to previous work. The measurements of aorta size agreed with the measurements reported in previous work. The initial results showed associations of aorta morphology with calcification and with aging. These results may indicate aorta stiffening and unwrapping with calcification and aging. The authors have developed an objective tool to assess aorta morphology and aortic calcium plaques on CT scans that may be used to provide information about the presence of cardiovascular disease and its clinical impact in smokers.

Automated quantitative 3D analysis of aorta size, morphology, and mural calcification distributions

PubMed Central

Kurugol, Sila; Come, Carolyn E.; Diaz, Alejandro A.; Ross, James C.; Kinney, Greg L.; Black-Shinn, Jennifer L.; Hokanson, John E.; Budoff, Matthew J.; Washko, George R.; San Jose Estepar, Raul

2015-01-01

Purpose: The purpose of this work is to develop a fully automated pipeline to compute aorta morphology and calcification measures in large cohorts of CT scans that can be used to investigate the potential of these measures as imaging biomarkers of cardiovascular disease. Methods: The first step of the automated pipeline is aorta segmentation. The algorithm the authors propose first detects an initial aorta boundary by exploiting cross-sectional circularity of aorta in axial slices and aortic arch in reformatted oblique slices. This boundary is then refined by a 3D level-set segmentation that evolves the boundary to the location of nearby edges. The authors then detect the aortic calcifications with thresholding and filter out the false positive regions due to nearby high intensity structures based on their anatomical location. The authors extract the centerline and oblique cross sections of the segmented aortas and compute the aorta morphology and calcification measures of the first 2500 subjects from COPDGene study. These measures include volume and number of calcified plaques and measures of vessel morphology such as average cross-sectional area, tortuosity, and arch width. Results: The authors computed the agreement between the algorithm and expert segmentations on 45 CT scans and obtained a closest point mean error of 0.62 ± 0.09 mm and a Dice coefficient of 0.92 ± 0.01. The calcification detection algorithm resulted in an improved true positive detection rate of 0.96 compared to previous work. The measurements of aorta size agreed with the measurements reported in previous work. The initial results showed associations of aorta morphology with calcification and with aging. These results may indicate aorta stiffening and unwrapping with calcification and aging. Conclusions: The authors have developed an objective tool to assess aorta morphology and aortic calcium plaques on CT scans that may be used to provide information about the presence of cardiovascular disease and its clinical impact in smokers. PMID:26328995

Examining applying high performance genetic data feature selection and classification algorithms for colon cancer diagnosis.

PubMed

Al-Rajab, Murad; Lu, Joan; Xu, Qiang

2017-07-01

This paper examines the accuracy and efficiency (time complexity) of high performance genetic data feature selection and classification algorithms for colon cancer diagnosis. The need for this research derives from the urgent and increasing need for accurate and efficient algorithms. Colon cancer is a leading cause of death worldwide, hence it is vitally important for the cancer tissues to be expertly identified and classified in a rapid and timely manner, to assure both a fast detection of the disease and to expedite the drug discovery process. In this research, a three-phase approach was proposed and implemented: Phases One and Two examined the feature selection algorithms and classification algorithms employed separately, and Phase Three examined the performance of the combination of these. It was found from Phase One that the Particle Swarm Optimization (PSO) algorithm performed best with the colon dataset as a feature selection (29 genes selected) and from Phase Two that the Support Vector Machine (SVM) algorithm outperformed other classifications, with an accuracy of almost 86%. It was also found from Phase Three that the combined use of PSO and SVM surpassed other algorithms in accuracy and performance, and was faster in terms of time analysis (94%). It is concluded that applying feature selection algorithms prior to classification algorithms results in better accuracy than when the latter are applied alone. This conclusion is important and significant to industry and society. Copyright © 2017 Elsevier B.V. All rights reserved.

75 FR 9925 - Notice of Intent to Repatriate a Cultural Item: The Cleveland Museum of Natural History...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-03-04

... Cleveland Museum of Natural History, Cleveland, OH, that meets the definition of a ``sacred object'' under... Park Service is not responsible for the determinations in this notice. The sacred object is a wooden... when unwrapped. Thus, only part of the sacred object is currently in the collection. The pipe stem...

An improved algorithm for evaluating trellis phase codes

NASA Technical Reports Server (NTRS)

Mulligan, M. G.; Wilson, S. G.

1982-01-01

A method is described for evaluating the minimum distance parameters of trellis phase codes, including CPFSK, partial response FM, and more importantly, coded CPM (continuous phase modulation) schemes. The algorithm provides dramatically faster execution times and lesser memory requirements than previous algorithms. Results of sample calculations and timing comparisons are included.

An improved algorithm for evaluating trellis phase codes

NASA Technical Reports Server (NTRS)

Mulligan, M. G.; Wilson, S. G.

1984-01-01

A method is described for evaluating the minimum distance parameters of trellis phase codes, including CPFSK, partial response FM, and more importantly, coded CPM (continuous phase modulation) schemes. The algorithm provides dramatically faster execution times and lesser memory requirements than previous algorithms. Results of sample calculations and timing comparisons are included.

A constraint optimization based virtual network mapping method

NASA Astrophysics Data System (ADS)

Li, Xiaoling; Guo, Changguo; Wang, Huaimin; Li, Zhendong; Yang, Zhiwen

2013-03-01

Virtual network mapping problem, maps different virtual networks onto the substrate network is an extremely challenging work. This paper proposes a constraint optimization based mapping method for solving virtual network mapping problem. This method divides the problem into two phases, node mapping phase and link mapping phase, which are all NP-hard problems. Node mapping algorithm and link mapping algorithm are proposed for solving node mapping phase and link mapping phase, respectively. Node mapping algorithm adopts the thinking of greedy algorithm, mainly considers two factors, available resources which are supplied by the nodes and distance between the nodes. Link mapping algorithm is based on the result of node mapping phase, adopts the thinking of distributed constraint optimization method, which can guarantee to obtain the optimal mapping with the minimum network cost. Finally, simulation experiments are used to validate the method, and results show that the method performs very well.

Generalized gradient algorithm for trajectory optimization

NASA Technical Reports Server (NTRS)

Zhao, Yiyuan; Bryson, A. E.; Slattery, R.

1990-01-01

The generalized gradient algorithm presented and verified as a basis for the solution of trajectory optimization problems improves the performance index while reducing path equality constraints, and terminal equality constraints. The algorithm is conveniently divided into two phases, of which the first, 'feasibility' phase yields a solution satisfying both path and terminal constraints, while the second, 'optimization' phase uses the results of the first phase as initial guesses.

CONEDEP: COnvolutional Neural network based Earthquake DEtection and Phase Picking

NASA Astrophysics Data System (ADS)

Zhou, Y.; Huang, Y.; Yue, H.; Zhou, S.; An, S.; Yun, N.

2017-12-01

We developed an automatic local earthquake detection and phase picking algorithm based on Fully Convolutional Neural network (FCN). The FCN algorithm detects and segments certain features (phases) in 3 component seismograms to realize efficient picking. We use STA/LTA algorithm and template matching algorithm to construct the training set from seismograms recorded 1 month before and after the Wenchuan earthquake. Precise P and S phases are identified and labeled to construct the training set. Noise data are produced by combining back-ground noise and artificial synthetic noise to form the equivalent scale of noise set as the signal set. Training is performed on GPUs to achieve efficient convergence. Our algorithm has significantly improved performance in terms of the detection rate and precision in comparison with STA/LTA and template matching algorithms.

Phase Retrieval Using a Genetic Algorithm on the Systematic Image-Based Optical Alignment Testbed

NASA Technical Reports Server (NTRS)

Taylor, Jaime R.

2003-01-01

NASA s Marshall Space Flight Center s Systematic Image-Based Optical Alignment (SIBOA) Testbed was developed to test phase retrieval algorithms and hardware techniques. Individuals working with the facility developed the idea of implementing phase retrieval by breaking the determination of the tip/tilt of each mirror apart from the piston motion (or translation) of each mirror. Presented in this report is an algorithm that determines the optimal phase correction associated only with the piston motion of the mirrors. A description of the Phase Retrieval problem is first presented. The Systematic Image-Based Optical Alignment (SIBOA) Testbeb is then described. A Discrete Fourier Transform (DFT) is necessary to transfer the incoming wavefront (or estimate of phase error) into the spatial frequency domain to compare it with the image. A method for reducing the DFT to seven scalar/matrix multiplications is presented. A genetic algorithm is then used to search for the phase error. The results of this new algorithm on a test problem are presented.

Improved Small Baseline processing by means of CAESAR eigen-interferograms decomposition

NASA Astrophysics Data System (ADS)

Verde, Simona; Reale, Diego; Pauciullo, Antonio; Fornaro, Gianfranco

2018-05-01

The Component extrAction and sElection SAR (CAESAR) is a method for the selection and filtering of scattering mechanisms recently proposed in the multibaseline interferometric SAR framework. Its strength is related to the possibility to select and extract multiple dominant scattering mechanisms, even interfering in the same pixel, since the stage of the interferograms generation, and to carry out a decorrelation noise phase filtering. Up to now, the validation of CAESAR has been addressed in the framework of SAR Tomography for the model-based detection of Persistent Scatterers (PSs). In this paper we investigate the effectiveness related to the use of CAESAR eigen-interferograms in classical multi-baseline DInSAR processing, based on the Small BAseline Subset (SBAS) strategy, typically adopted to extract large scale distributed deformation and atmospheric phase screen. Such components are also exploited for the calibration of the full resolution data for PS or tomographic analysis. By using COSMO-SKyMed (CSK) SAR data, it is demonstrated that dominant scattering component filtering effectively improves the monitoring of distributed spatially decorrelated areas (f.i. bare soil, rocks, etc.) and allows bringing to light man-made structures with dominant backscattering characteristics embedded in highly temporally decorrelated scenario, as isolated asphalt roads and block of buildings in non-urban areas. Moreover it is shown that, thanks to the CAESAR multiple scattering components separation, the layover mitigation in low-topography eigen-interferograms relieves Phase Unwrapping (PhU) errors in urban areas due to abrupt height variations.

MR thermometry analysis program for laser- or high-intensity focused ultrasound (HIFU)-induced heating at a clinical MR scanner

NASA Astrophysics Data System (ADS)

Kim, Eun Ju; Jeong, Kiyoung; Oh, Seung Jae; Kim, Daehong; Park, Eun Hae; Lee, Young Han; Suh, Jin-Suck

2014-12-01

Magnetic resonance (MR) thermometry is a noninvasive method for monitoring local temperature change during thermal therapy. In this study, a MR temperature analysis program was established for a laser with gold nanorods (GNRs) and high-intensity focused ultrasound (HIFU)-induced heating MR thermometry. The MR temperature map was reconstructed using the water proton resonance frequency (PRF) method. The temperature-sensitive phase difference was acquired by using complex number subtraction instead of direct phase subtraction in order to avoid another phase unwrapping process. A temperature map-analyzing program was developed and implemented in IDL (Interactive Data Language) for effective temperature monitoring. This one program was applied to two different heating devices at a clinical MR scanner. All images were acquired with the fast spoiled gradient echo (fSPGR) pulse sequence on a 3.0 T GE Discovery MR750 scanner with an 8-channel knee array coil or with a home-built small surface coil. The analyzed temperature values were confirmed by using values simultaneously measured with an optical temperature probe (R2 = 0.996). The temperature change in small samples induced by a laser or by HIFU was analyzed by using a raw data, that consisted of complex numbers. This study shows that our MR thermometry analysis program can be used for thermal therapy study with a laser or HIFU at a clinical MR scanner. It can also be applied to temperature monitoring for any other thermal therapy based on the PRF method.

Fringe pattern demodulation with a two-dimensional digital phase-locked loop algorithm.

PubMed

Gdeisat, Munther A; Burton, David R; Lalor, Michael J

2002-09-10

A novel technique called a two-dimensional digital phase-locked loop (DPLL) for fringe pattern demodulation is presented. This algorithm is more suitable for demodulation of fringe patterns with varying phase in two directions than the existing DPLL techniques that assume that the phase of the fringe patterns varies only in one direction. The two-dimensional DPLL technique assumes that the phase of a fringe pattern is continuous in both directions and takes advantage of the phase continuity; consequently, the algorithm has better noise performance than the existing DPLL schemes. The two-dimensional DPLL algorithm is also suitable for demodulation of fringe patterns with low sampling rates, and it outperforms the Fourier fringe analysis technique in this aspect.

Complex-based OCT angiography algorithm recovers microvascular information better than amplitude- or phase-based algorithms in phase-stable systems

NASA Astrophysics Data System (ADS)

Xu, Jingjiang; Song, Shaozhen; Li, Yuandong; Wang, Ruikang K.

2018-01-01

Optical coherence tomography angiography (OCTA) is increasingly becoming a popular inspection tool for biomedical imaging applications. By exploring the amplitude, phase and complex information available in OCT signals, numerous algorithms have been proposed that contrast functional vessel networks within microcirculatory tissue beds. However, it is not clear which algorithm delivers optimal imaging performance. Here, we investigate systematically how amplitude and phase information have an impact on the OCTA imaging performance, to establish the relationship of amplitude and phase stability with OCT signal-to-noise ratio (SNR), time interval and particle dynamics. With either repeated A-scan or repeated B-scan imaging protocols, the amplitude noise increases with the increase of OCT SNR; however, the phase noise does the opposite, i.e. it increases with the decrease of OCT SNR. Coupled with experimental measurements, we utilize a simple Monte Carlo (MC) model to simulate the performance of amplitude-, phase- and complex-based algorithms for OCTA imaging, the results of which suggest that complex-based algorithms deliver the best performance when the phase noise is  <  ~40 mrad. We also conduct a series of in vivo vascular imaging in animal models and human retina to verify the findings from the MC model through assessing the OCTA performance metrics of vessel connectivity, image SNR and contrast-to-noise ratio. We show that for all the metrics assessed, the complex-based algorithm delivers better performance than either the amplitude- or phase-based algorithms for both the repeated A-scan and the B-scan imaging protocols, which agrees well with the conclusion drawn from the MC simulations.

Complex-based OCT angiography algorithm recovers microvascular information better than amplitude- or phase-based algorithms in phase-stable systems.

PubMed

Xu, Jingjiang; Song, Shaozhen; Li, Yuandong; Wang, Ruikang K

2017-12-19

Optical coherence tomography angiography (OCTA) is increasingly becoming a popular inspection tool for biomedical imaging applications. By exploring the amplitude, phase and complex information available in OCT signals, numerous algorithms have been proposed that contrast functional vessel networks within microcirculatory tissue beds. However, it is not clear which algorithm delivers optimal imaging performance. Here, we investigate systematically how amplitude and phase information have an impact on the OCTA imaging performance, to establish the relationship of amplitude and phase stability with OCT signal-to-noise ratio (SNR), time interval and particle dynamics. With either repeated A-scan or repeated B-scan imaging protocols, the amplitude noise increases with the increase of OCT SNR; however, the phase noise does the opposite, i.e. it increases with the decrease of OCT SNR. Coupled with experimental measurements, we utilize a simple Monte Carlo (MC) model to simulate the performance of amplitude-, phase- and complex-based algorithms for OCTA imaging, the results of which suggest that complex-based algorithms deliver the best performance when the phase noise is  <  ~40 mrad. We also conduct a series of in vivo vascular imaging in animal models and human retina to verify the findings from the MC model through assessing the OCTA performance metrics of vessel connectivity, image SNR and contrast-to-noise ratio. We show that for all the metrics assessed, the complex-based algorithm delivers better performance than either the amplitude- or phase-based algorithms for both the repeated A-scan and the B-scan imaging protocols, which agrees well with the conclusion drawn from the MC simulations.

Large-Scale Sentinel-1 Processing for Solid Earth Science and Urgent Response using Cloud Computing and Machine Learning

NASA Astrophysics Data System (ADS)

Hua, H.; Owen, S. E.; Yun, S. H.; Agram, P. S.; Manipon, G.; Starch, M.; Sacco, G. F.; Bue, B. D.; Dang, L. B.; Linick, J. P.; Malarout, N.; Rosen, P. A.; Fielding, E. J.; Lundgren, P.; Moore, A. W.; Liu, Z.; Farr, T.; Webb, F.; Simons, M.; Gurrola, E. M.

2017-12-01

With the increased availability of open SAR data (e.g. Sentinel-1 A/B), new challenges are being faced with processing and analyzing the voluminous SAR datasets to make geodetic measurements. Upcoming SAR missions such as NISAR are expected to generate close to 100TB per day. The Advanced Rapid Imaging and Analysis (ARIA) project can now generate geocoded unwrapped phase and coherence products from Sentinel-1 TOPS mode data in an automated fashion, using the ISCE software. This capability is currently being exercised on various study sites across the United States and around the globe, including Hawaii, Central California, Iceland and South America. The automated and large-scale SAR data processing and analysis capabilities use cloud computing techniques to speed the computations and provide scalable processing power and storage. Aspects such as how to processing these voluminous SLCs and interferograms at global scales, keeping up with the large daily SAR data volumes, and how to handle the voluminous data rates are being explored. Scene-partitioning approaches in the processing pipeline help in handling global-scale processing up to unwrapped interferograms with stitching done at a late stage. We have built an advanced science data system with rapid search functions to enable access to the derived data products. Rapid image processing of Sentinel-1 data to interferograms and time series is already being applied to natural hazards including earthquakes, floods, volcanic eruptions, and land subsidence due to fluid withdrawal. We will present the status of the ARIA science data system for generating science-ready data products and challenges that arise from being able to process SAR datasets to derived time series data products at large scales. For example, how do we perform large-scale data quality screening on interferograms? What approaches can be used to minimize compute, storage, and data movement costs for time series analysis in the cloud? We will also present some of our findings from applying machine learning and data analytics on the processed SAR data streams. We will also present lessons learned on how to ease the SAR community onto interfacing with these cloud-based SAR science data systems.

Renewable energy in electric utility capacity planning: a decomposition approach with application to a Mexican utility

DOE Office of Scientific and Technical Information (OSTI.GOV)

Staschus, K.

1985-01-01

In this dissertation, efficient algorithms for electric-utility capacity expansion planning with renewable energy are developed. The algorithms include a deterministic phase that quickly finds a near-optimal expansion plan using derating and a linearized approximation to the time-dependent availability of nondispatchable energy sources. A probabilistic second phase needs comparatively few computer-time consuming probabilistic simulation iterations to modify this solution towards the optimal expansion plan. For the deterministic first phase, two algorithms, based on a Lagrangian Dual decomposition and a Generalized Benders Decomposition, are developed. The probabilistic second phase uses a Generalized Benders Decomposition approach. Extensive computational tests of the algorithms aremore » reported. Among the deterministic algorithms, the one based on Lagrangian Duality proves fastest. The two-phase approach is shown to save up to 80% in computing time as compared to a purely probabilistic algorithm. The algorithms are applied to determine the optimal expansion plan for the Tijuana-Mexicali subsystem of the Mexican electric utility system. A strong recommendation to push conservation programs in the desert city of Mexicali results from this implementation.« less

The Afar rift zone deformation dynamics retrieved through phase and amplitude SAR data

NASA Astrophysics Data System (ADS)

Casu, F.; Pagli, C.; Paglia, L.; Wang, H.; Wright, T. J.; Lanari, R.

2011-12-01

The Dabbahu rift segment of the Afar depression has been active since 2005 when a 2.5 km3 dyke intrusion and hundreds of earthquakes marked the onset a rifting episode which continues to date. Since 2003, the Afar depression has been repeatedly imaged by the ENVISAT satellite, generating a large SAR archive which allow us to study the ongoing deformation processes and the dynamics of magma movements. We combine sets of small baseline interferograms through the advanced DInSAR algorithm referred to as Small BAseline Subset (SBAS), and we generate both ground deformation maps and time series along the satellite Line-Of-Sight (LOS), with accuracies on the order of 5 mm. The main limitation of DInSAR applications is that large and rapid deformations, such as those caused by dyke intrusions and eruptions in Afar, cannot be fully measured. The phase information often degrades and some areas of the interferograms are affected by high fringe rates, leading to difficulties in the phase unwrapping, and/or to complete loss of coherence due to significant misregistration errors. This limitation can be overcome by exploiting the SAR image amplitude information instead of the phase, and by calculating the Pixel-Offset (PO) field of a given SAR image pair, for both range and azimuth directions. Moreover, after computing the POs for each image pair, it is possible to combine them, following the same rationale of the SBAS technique, to finally retrieve the offset-based deformation time series. Such technique, named PO-SBAS, permits to retrieve the deformation field in areas affected by very large displacements at an accuracy that, for ENVISAT data, correspond to 30cm and 15 cm for the range and azimuth, respectively. In this work, we study the Afar rift region deformations by using both the phase and amplitude information of several sets of SAR images acquired from ascending and descending ENVISAT tracks. In particular, we use the phase information to construct dense and accurate deformation maps and time series in areas not affected by large displacements. While in areas where the deformation gradient causes loss of coherence, we retrieve the displacement field through the amplitude information. This approach allows us to obtain a spatially detailed deformation map of the study area. In addition, by combining ascending and descending data we reconstruct the vertical and East-West components of deformation field. Furthermore, in areas affected by large deformations, we can also retrieve the full 3D deformation field, by using the North-South displacement component obtained from the azimuth PO information. Distinct sources of deformations interact in Afar. Fault movements and magma chamber deflation have accompanied dyke intrusions but quantifying each contribution to the total deformation has been challenging, also due to loss of coherence in the central part of the rift. Here we combined the phase and amplitude information in order to retrieve the full deformation field of repeated intrusions. This allows us to better constrain the fault movements that occur as the dyke propagates as well as the magma movements from individual magma chambers.

Iterative projection algorithms for ab initio phasing in virus crystallography.

PubMed

Lo, Victor L; Kingston, Richard L; Millane, Rick P

2016-12-01

Iterative projection algorithms are proposed as a tool for ab initio phasing in virus crystallography. The good global convergence properties of these algorithms, coupled with the spherical shape and high structural redundancy of icosahedral viruses, allows high resolution phases to be determined with no initial phase information. This approach is demonstrated by determining the electron density of a virus crystal with 5-fold non-crystallographic symmetry, starting with only a spherical shell envelope. The electron density obtained is sufficiently accurate for model building. The results indicate that iterative projection algorithms should be routinely applicable in virus crystallography, without the need for ancillary phase information. Copyright © 2016 Elsevier Inc. All rights reserved.

Quantitative comparison between a multiecho sequence and a single-echo sequence for susceptibility-weighted phase imaging.

PubMed

Gilbert, Guillaume; Savard, Geneviève; Bard, Céline; Beaudoin, Gilles

2012-06-01

The aim of this study was to investigate the benefits arising from the use of a multiecho sequence for susceptibility-weighted phase imaging using a quantitative comparison with a standard single-echo acquisition. Four healthy adult volunteers were imaged on a clinical 3-T system using a protocol comprising two different three-dimensional susceptibility-weighted gradient-echo sequences: a standard single-echo sequence and a multiecho sequence. Both sequences were repeated twice in order to evaluate the local noise contribution by a subtraction of the two acquisitions. For the multiecho sequence, the phase information from each echo was independently unwrapped, and the background field contribution was removed using either homodyne filtering or the projection onto dipole fields method. The phase information from all echoes was then combined using a weighted linear regression. R2 maps were also calculated from the multiecho acquisitions. The noise standard deviation in the reconstructed phase images was evaluated for six manually segmented regions of interest (frontal white matter, posterior white matter, globus pallidus, putamen, caudate nucleus and lateral ventricle). The use of the multiecho sequence for susceptibility-weighted phase imaging led to a reduction of the noise standard deviation for all subjects and all regions of interest investigated in comparison to the reference single-echo acquisition. On average, the noise reduction ranged from 18.4% for the globus pallidus to 47.9% for the lateral ventricle. In addition, the amount of noise reduction was found to be strongly inversely correlated to the estimated R2 value (R=-0.92). In conclusion, the use of a multiecho sequence is an effective way to decrease the noise contribution in susceptibility-weighted phase images, while preserving both contrast and acquisition time. The proposed approach additionally permits the calculation of R2 maps. Copyright © 2012 Elsevier Inc. All rights reserved.

A Palmprint Recognition Algorithm Using Phase-Only Correlation

NASA Astrophysics Data System (ADS)

Ito, Koichi; Aoki, Takafumi; Nakajima, Hiroshi; Kobayashi, Koji; Higuchi, Tatsuo

This paper presents a palmprint recognition algorithm using Phase-Only Correlation (POC). The use of phase components in 2D (two-dimensional) discrete Fourier transforms of palmprint images makes it possible to achieve highly robust image registration and matching. In the proposed algorithm, POC is used to align scaling, rotation and translation between two palmprint images, and evaluate similarity between them. Experimental evaluation using a palmprint image database clearly demonstrates efficient matching performance of the proposed algorithm.

A comparison of different algorithms for phasing haplotypes using Holstein cattle genotypes and pedigree data.

PubMed

Miar, Younes; Sargolzaei, Mehdi; Schenkel, Flavio S

2017-04-01

Phasing genotypes to haplotypes is becoming increasingly important due to its applications in the study of diseases, population and evolutionary genetics, imputation, and so on. Several studies have focused on the development of computational methods that infer haplotype phase from population genotype data. The aim of this study was to compare phasing algorithms implemented in Beagle, Findhap, FImpute, Impute2, and ShapeIt2 software using 50k and 777k (HD) genotyping data. Six scenarios were considered: no-parents, sire-progeny pairs, sire-dam-progeny trios, each with and without pedigree information in Holstein cattle. Algorithms were compared with respect to their phasing accuracy and computational efficiency. In the studied population, Beagle and FImpute were more accurate than other phasing algorithms. Across scenarios, phasing accuracies for Beagle and FImpute were 99.49-99.90% and 99.44-99.99% for 50k, respectively, and 99.90-99.99% and 99.87-99.99% for HD, respectively. Generally, FImpute resulted in higher accuracy when genotypic information of at least one parent was available. In the absence of parental genotypes and pedigree information, Beagle and Impute2 (with double the default number of states) were slightly more accurate than FImpute. Findhap gave high phasing accuracy when parents' genotypes and pedigree information were available. In terms of computing time, Findhap was the fastest algorithm followed by FImpute. FImpute was 30 to 131, 87 to 786, and 353 to 1,400 times faster across scenarios than Beagle, ShapeIt2, and Impute2, respectively. In summary, FImpute and Beagle were the most accurate phasing algorithms. Moreover, the low computational requirement of FImpute makes it an attractive algorithm for phasing genotypes of large livestock populations. Copyright © 2017 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

PHF1 Tudor and N-terminal domains synergistically target partially unwrapped nucleosomes to increase DNA accessibility

PubMed Central

Gibson, Matthew D.; Gatchalian, Jovylyn; Slater, Andrew; Kutateladze, Tatiana G.

2017-01-01

Abstract The Tudor domain of human PHF1 recognizes trimethylated lysine 36 on histone H3 (H3K36me3). PHF1 relies on this interaction to regulate PRC2 methyltransferase activity, localize to DNA double strand breaks and mediate nucleosome accessibility. Here, we investigate the impact of the PHF1 N-terminal domain (NTD) on the Tudor domain interaction with the nucleosome. We show that the NTD is partially ordered when it is natively attached to the Tudor domain. Through a combination of FRET and single molecule studies, we find that the increase of DNA accessibility within the H3K36me3-containing nucleosome, instigated by the Tudor binding to H3K36me3, is dramatically enhanced by the NTD. We demonstrate that this nearly order of magnitude increase is due to preferential binding of PHF1 to partially unwrapped nucleosomes, and that PHF1 alters DNA–protein binding within the nucleosome by decreasing dissociation rates. These results highlight the potency of a PTM-binding protein to regulate DNA accessibility and underscores the role of the novel mechanism by which nucleosomes control DNA–protein binding through increasing protein dissociation rates. PMID:28082396

Asymmetric breathing motions of nucleosomal DNA and the role of histone tails

NASA Astrophysics Data System (ADS)

Chakraborty, Kaushik; Loverde, Sharon M.

2017-08-01

The most important packing unit of DNA in the eukaryotic cell is the nucleosome. It undergoes large-scale structural re-arrangements during different cell cycles. For example, the disassembly of the nucleosome is one of the key steps for DNA replication, whereas reassembly occurs after replication. Thus, conformational dynamics of the nucleosome is crucial for different DNA metabolic processes. We perform three different sets of atomistic molecular dynamics simulations of the nucleosome core particle at varying degrees of salt conditions for a total of 0.7 μs simulation time. We find that the conformational dynamics of the nucleosomal DNA tails are oppositely correlated from each other during the initial breathing motions. Furthermore, the strength of the interaction of the nucleosomal DNA tail with the neighboring H2A histone tail modulates the conformational state of the nucleosomal DNA tail. With increasing salt concentration, the degree of asymmetry in the conformation of the nucleosomal DNA tails decreases as both tails tend to unwrap. This direct correlation between the asymmetric breathing motions of the DNA tails and the H2A histone tails, and its decrease at higher salt concentrations, may play a significant role in the molecular pathway of unwrapping.

Linden flower (Tilia spp.) as potential vehicle of Clostridium botulinum spores in the transmission of infant botulism.

PubMed

Bianco, M I; Lúquez, C; De Jong, L I T; Fernández, R A

2009-01-01

Infant botulism is an intestinal toxemia caused principally by Clostridium botulinum. Since the infection occurs in the intestinal tract, numerous food products have been investigated for the presence of C. botulinum and its neurotoxins. In many countries, people use linden flower (Tilia spp) tea as a household remedy and give it to infants as a sedative. Therefore, to help provide a clear picture of this disease transmission, we investigated the presence of botulinum spores in linden flowers. In this study, we analyzed 100 samples of unwrapped linden flowers and 100 samples of linden flowers in tea bags to determine the prevalence and spore-load of C. botulinum. Results were analyzed by the Fisher test. We detected a prevalence of 3% of botulinum spores in the unwrapped linden flowers analyzed and a spore load of 30 spores per 100 grams. None of the industrialized linden flowers analyzed were contaminated with botulinum spores. C. botulinum type A was identified in two samples and type B in one sample. Linden flowers must be considered a potential vehicle of C. botulinum, and the ingestion of linden flower tea can represent a risk factor for infant botulism.

A Dual Frequency Carrier Phase Error Difference Checking Algorithm for the GNSS Compass.

PubMed

Liu, Shuo; Zhang, Lei; Li, Jian

2016-11-24

The performance of the Global Navigation Satellite System (GNSS) compass is related to the quality of carrier phase measurement. How to process the carrier phase error properly is important to improve the GNSS compass accuracy. In this work, we propose a dual frequency carrier phase error difference checking algorithm for the GNSS compass. The algorithm aims at eliminating large carrier phase error in dual frequency double differenced carrier phase measurement according to the error difference between two frequencies. The advantage of the proposed algorithm is that it does not need additional environment information and has a good performance on multiple large errors compared with previous research. The core of the proposed algorithm is removing the geographical distance from the dual frequency carrier phase measurement, then the carrier phase error is separated and detectable. We generate the Double Differenced Geometry-Free (DDGF) measurement according to the characteristic that the different frequency carrier phase measurements contain the same geometrical distance. Then, we propose the DDGF detection to detect the large carrier phase error difference between two frequencies. The theoretical performance of the proposed DDGF detection is analyzed. An open sky test, a manmade multipath test and an urban vehicle test were carried out to evaluate the performance of the proposed algorithm. The result shows that the proposed DDGF detection is able to detect large error in dual frequency carrier phase measurement by checking the error difference between two frequencies. After the DDGF detection, the accuracy of the baseline vector is improved in the GNSS compass.

Efficient algorithms for polyploid haplotype phasing.

PubMed

He, Dan; Saha, Subrata; Finkers, Richard; Parida, Laxmi

2018-05-09

Inference of haplotypes, or the sequence of alleles along the same chromosomes, is a fundamental problem in genetics and is a key component for many analyses including admixture mapping, identifying regions of identity by descent and imputation. Haplotype phasing based on sequencing reads has attracted lots of attentions. Diploid haplotype phasing where the two haplotypes are complimentary have been studied extensively. In this work, we focused on Polyploid haplotype phasing where we aim to phase more than two haplotypes at the same time from sequencing data. The problem is much more complicated as the search space becomes much larger and the haplotypes do not need to be complimentary any more. We proposed two algorithms, (1) Poly-Harsh, a Gibbs Sampling based algorithm which alternatively samples haplotypes and the read assignments to minimize the mismatches between the reads and the phased haplotypes, (2) An efficient algorithm to concatenate haplotype blocks into contiguous haplotypes. Our experiments showed that our method is able to improve the quality of the phased haplotypes over the state-of-the-art methods. To our knowledge, our algorithm for haplotype blocks concatenation is the first algorithm that leverages the shared information across multiple individuals to construct contiguous haplotypes. Our experiments showed that it is both efficient and effective.

Phase accumulation tracking algorithm for effective index retrieval of fishnet metamaterials and other resonant guided wave networks

NASA Astrophysics Data System (ADS)

Feigenbaum, Eyal; Hiszpanski, Anna M.

2017-07-01

A phase accumulation tracking (PAT) algorithm is proposed and demonstrated for the retrieval of the effective index of fishnet metamaterials (FMMs) in order to avoid the multi-branch uncertainty problem. This algorithm tracks the phase and amplitude of the dominant propagation mode across the FMM slab. The suggested PAT algorithm applies to resonant guided wave networks having only one mode that carries the light between the two slab ends, where the FMM is one example of this metamaterials sub-class. The effective index is a net effect of positive and negative accumulated phase in the alternating FMM metal and dielectric layers, with a negative effective index occurring when negative phase accumulation dominates.

Vega roll and attitude control system algorithms trade-off study

NASA Astrophysics Data System (ADS)

Paulino, N.; Cuciniello, G.; Cruciani, I.; Corraro, F.; Spallotta, D.; Nebula, F.

2013-12-01

This paper describes the trade-off study for the selection of the most suitable algorithms for the Roll and Attitude Control System (RACS) within the FPS-A program, aimed at developing the new Flight Program Software of VEGA Launcher. Two algorithms were analyzed: Switching Lines (SL) and Quaternion Feedback Regulation. Using a development simulation tool that models two critical flight phases (Long Coasting Phase (LCP) and Payload Release (PLR) Phase), both algorithms were assessed with Monte Carlo batch simulations for both of the phases. The statistical outcomes of the results demonstrate a 100 percent success rate for Quaternion Feedback Regulation, and support the choice of this method.

Simulation of co-phase error correction of optical multi-aperture imaging system based on stochastic parallel gradient decent algorithm

NASA Astrophysics Data System (ADS)

He, Xiaojun; Ma, Haotong; Luo, Chuanxin

2016-10-01

The optical multi-aperture imaging system is an effective way to magnify the aperture and increase the resolution of telescope optical system, the difficulty of which lies in detecting and correcting of co-phase error. This paper presents a method based on stochastic parallel gradient decent algorithm (SPGD) to correct the co-phase error. Compared with the current method, SPGD method can avoid detecting the co-phase error. This paper analyzed the influence of piston error and tilt error on image quality based on double-aperture imaging system, introduced the basic principle of SPGD algorithm, and discuss the influence of SPGD algorithm's key parameters (the gain coefficient and the disturbance amplitude) on error control performance. The results show that SPGD can efficiently correct the co-phase error. The convergence speed of the SPGD algorithm is improved with the increase of gain coefficient and disturbance amplitude, but the stability of the algorithm reduced. The adaptive gain coefficient can solve this problem appropriately. This paper's results can provide the theoretical reference for the co-phase error correction of the multi-aperture imaging system.

Impact of respiratory-correlated CT sorting algorithms on the choice of margin definition for free-breathing lung radiotherapy treatments.

PubMed

Thengumpallil, Sheeba; Germond, Jean-François; Bourhis, Jean; Bochud, François; Moeckli, Raphaël

2016-06-01

To investigate the impact of Toshiba phase- and amplitude-sorting algorithms on the margin strategies for free-breathing lung radiotherapy treatments in the presence of breathing variations. 4D CT of a sphere inside a dynamic thorax phantom was acquired. The 4D CT was reconstructed according to the phase- and amplitude-sorting algorithms. The phantom was moved by reproducing amplitude, frequency, and a mix of amplitude and frequency variations. Artefact analysis was performed for Mid-Ventilation and ITV-based strategies on the images reconstructed by phase- and amplitude-sorting algorithms. The target volume deviation was assessed by comparing the target volume acquired during irregular motion to the volume acquired during regular motion. The amplitude-sorting algorithm shows reduced artefacts for only amplitude variations while the phase-sorting algorithm for only frequency variations. For amplitude and frequency variations, both algorithms perform similarly. Most of the artefacts are blurring and incomplete structures. We found larger artefacts and volume differences for the Mid-Ventilation with respect to the ITV strategy, resulting in a higher relative difference of the surface distortion value which ranges between maximum 14.6% and minimum 4.1%. The amplitude- is superior to the phase-sorting algorithm in the reduction of motion artefacts for amplitude variations while phase-sorting for frequency variations. A proper choice of 4D CT sorting algorithm is important in order to reduce motion artefacts, especially if Mid-Ventilation strategy is used. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Phase Distribution and Selection of Partially Correlated Persistent Scatterers

NASA Astrophysics Data System (ADS)

Lien, J.; Zebker, H. A.

2012-12-01

Interferometric synthetic aperture radar (InSAR) time-series methods can effectively estimate temporal surface changes induced by geophysical phenomena. However, such methods are susceptible to decorrelation due to spatial and temporal baselines (radar pass separation), changes in orbital geometries, atmosphere, and noise. These effects limit the number of interferograms that can be used for differential analysis and obscure the deformation signal. InSAR decorrelation effects may be ameliorated by exploiting pixels that exhibit phase stability across the stack of interferograms. These so-called persistent scatterer (PS) pixels are dominated by a single point-like scatterer that remains phase-stable over the spatial and temporal baseline. By identifying a network of PS pixels for use in phase unwrapping, reliable deformation measurements may be obtained even in areas of low correlation, where traditional InSAR techniques fail to produce useful observations. Many additional pixels can be added to the PS list if we are able to identify those in which a dominant scatterer exhibits partial, rather than complete, correlation across all radar scenes. In this work, we quantify and exploit the phase stability of partially correlated PS pixels. We present a new system model for producing interferometric pixel values from a complex surface backscatter function characterized by signal-to-clutter ratio (SCR). From this model, we derive the joint probabilistic distribution for PS pixel phases in a stack of interferograms as a function of SCR and spatial baselines. This PS phase distribution generalizes previous results that assume the clutter phase contribution is uncorrelated between radar passes. We verify the analytic distribution through a series of radar scattering simulations. We use the derived joint PS phase distribution with maximum-likelihood SCR estimation to analyze an area of the Hayward Fault Zone in the San Francisco Bay Area. We obtain a series of 38 interferometric images of the area from C-band ERS radar satellite passes between May 1995 and December 2000. We compare the estimated SCRs to those calculated with previously derived PS phase distributions. Finally, we examine the PS network density resulting from varying selection thresholds of SCR and compare to other PS identification techniques.

Phase extraction based on iterative algorithm using five-frame crossed fringes in phase measuring deflectometry

NASA Astrophysics Data System (ADS)

Jin, Chengying; Li, Dahai; Kewei, E.; Li, Mengyang; Chen, Pengyu; Wang, Ruiyang; Xiong, Zhao

2018-06-01

In phase measuring deflectometry, two orthogonal sinusoidal fringe patterns are separately projected on the test surface and the distorted fringes reflected by the surface are recorded, each with a sequential phase shift. Then the two components of the local surface gradients are obtained by triangulation. It usually involves some complicated and time-consuming procedures (fringe projection in the orthogonal directions). In addition, the digital light devices (e.g. LCD screen and CCD camera) are not error free. There are quantization errors for each pixel of both LCD and CCD. Therefore, to avoid the complex process and improve the reliability of the phase distribution, a phase extraction algorithm with five-frame crossed fringes is presented in this paper. It is based on a least-squares iterative process. Using the proposed algorithm, phase distributions and phase shift amounts in two orthogonal directions can be simultaneously and successfully determined through an iterative procedure. Both a numerical simulation and a preliminary experiment are conducted to verify the validity and performance of this algorithm. Experimental results obtained by our method are shown, and comparisons between our experimental results and those obtained by the traditional 16-step phase-shifting algorithm and between our experimental results and those measured by the Fizeau interferometer are made.

Comparison of the Performance of the Warfarin Pharmacogenetics Algorithms in Patients with Surgery of Heart Valve Replacement and Heart Valvuloplasty.

PubMed

Xu, Hang; Su, Shi; Tang, Wuji; Wei, Meng; Wang, Tao; Wang, Dongjin; Ge, Weihong

2015-09-01

A large number of warfarin pharmacogenetics algorithms have been published. Our research was aimed to evaluate the performance of the selected pharmacogenetic algorithms in patients with surgery of heart valve replacement and heart valvuloplasty during the phase of initial and stable anticoagulation treatment. 10 pharmacogenetic algorithms were selected by searching PubMed. We compared the performance of the selected algorithms in a cohort of 193 patients during the phase of initial and stable anticoagulation therapy. Predicted dose was compared to therapeutic dose by using a predicted dose percentage that falls within 20% threshold of the actual dose (percentage within 20%) and mean absolute error (MAE). The average warfarin dose for patients was 3.05±1.23mg/day for initial treatment and 3.45±1.18mg/day for stable treatment. The percentages of the predicted dose within 20% of the therapeutic dose were 44.0±8.8% and 44.6±9.7% for the initial and stable phases, respectively. The MAEs of the selected algorithms were 0.85±0.18mg/day and 0.93±0.19mg/day, respectively. All algorithms had better performance in the ideal group than in the low dose and high dose groups. The only exception is the Wadelius et al. algorithm, which had better performance in the high dose group. The algorithms had similar performance except for the Wadelius et al. and Miao et al. algorithms, which had poor accuracy in our study cohort. The Gage et al. algorithm had better performance in both phases of initial and stable treatment. Algorithms had relatively higher accuracy in the >50years group of patients on the stable phase. Copyright © 2015 Elsevier Ltd. All rights reserved.

Theory of the amplitude-phase retrieval in any linear-transform system and its applications

NASA Astrophysics Data System (ADS)

Yang, Guozhen; Gu, Ben-Yuan; Dong, Bi-Zhen

1992-12-01

This paper is a summary of the theory of the amplitude-phase retrieval problem in any linear transform system and its applications based on our previous works in the past decade. We describe the general statement on the amplitude-phase retrieval problem in an imaging system and derive a set of equations governing the amplitude-phase distribution in terms of the rigorous mathematical derivation. We then show that, by using these equations and an iterative algorithm, a variety of amplitude-phase problems can be successfully handled. We carry out the systematic investigations and comprehensive numerical calculations to demonstrate the utilization of this new algorithm in various transform systems. For instance, we have achieved the phase retrieval from two intensity measurements in an imaging system with diffraction loss (non-unitary transform), both theoretically and experimentally, and the recovery of model real image from its Hartley-transform modulus only in one and two dimensional cases. We discuss the achievement of the phase retrieval problem from a single intensity only based on the sampling theorem and our algorithm. We also apply this algorithm to provide an optimal design of the phase-adjusted plate for a phase-adjustment focusing laser accelerator and a design approach of single phase-only element for implementing optical interconnect. In order to closely simulate the really measured data, we examine the reconstruction of image from its spectral modulus corrupted by a random noise in detail. The results show that the convergent solution can always be obtained and the quality of the recovered image is satisfactory. We also indicated the relationship and distinction between our algorithm and the original Gerchberg- Saxton algorithm. From these studies, we conclude that our algorithm shows great capability to deal with the comprehensive phase-retrieval problems in the imaging system and the inverse problem in solid state physics. It may open a new way to solve important inverse source problems extensively appearing in physics.

Monitoring of surface deformation in open pit mine using DInSAR time-series: a case study in the N5W iron mine (Carajás, Brazil) using TerraSAR-X data

NASA Astrophysics Data System (ADS)

Mura, José C.; Paradella, Waldir R.; Gama, Fabio F.; Santos, Athos R.; Galo, Mauricio; Camargo, Paulo O.; Silva, Arnaldo Q.; Silva, Guilherme G.

2014-10-01

We present an investigation of surface deformation using Differential SAR Interferometry (DInSAR) time-series carried out in an active open pit iron mine, the N5W, located in the Carajás Mineral Province (Brazilian Amazon region), using 33 TerraSAR-X (TSX-1) scenes. This mine has presented a historical of instability and surface monitoring measurements over sectors of the mine (pit walls) have been done based on ground based radar. Two complementary approaches were used: the standard DInSAR configuration, as an early warning of the slope instability conditions, and the DInSAR timeseries analysis. In order to decrease the topographic phase error a high resolution DEM was generated based on a stereo GeoEye-1 pair. Despite the fact that a DinSAR contains atmospheric and topographic phase artifacts and noise, it was possible to detect deformation in some interferometric pairs, covering pit benches, road ramps and waste piles. The timeseries analysis was performed using the 31 interferometric pairs, which were selected based on the highest mean coherence of a stack of 107 interferograms, presenting less phase unwrapping errors. The time-series deformation was retrieved by the Least-Squares (LS) solution using an extension of the Singular Value Decomposition (SVD), with a set of additional weighted constrain on the acceleration deformation. The atmospheric phase artifacts were filtered in the space-time domain and the DEM height errors were estimated based on the normal baseline diversity. The DInSAR time-series investigation showed good results for monitoring surface displacement in the N5W mine located in a tropical rainforest environment, providing very useful information about the ground movement for alarm, planning and risk assessment.

Optimal spiral phase modulation in Gerchberg-Saxton algorithm for wavefront reconstruction and correction

NASA Astrophysics Data System (ADS)

Baránek, M.; Běhal, J.; Bouchal, Z.

2018-01-01

In the phase retrieval applications, the Gerchberg-Saxton (GS) algorithm is widely used for the simplicity of implementation. This iterative process can advantageously be deployed in the combination with a spatial light modulator (SLM) enabling simultaneous correction of optical aberrations. As recently demonstrated, the accuracy and efficiency of the aberration correction using the GS algorithm can be significantly enhanced by a vortex image spot used as the target intensity pattern in the iterative process. Here we present an optimization of the spiral phase modulation incorporated into the GS algorithm.

Wendy's, the Potato Head Kids, and Me: Dealing with Sexist Representations in Language and Culture or, Un-wrapping the Hamburger.

ERIC Educational Resources Information Center

Dickel, Michael

If sexism, inherent in the fabric of the culture of human society, produced sexist language, then sexist language no doubt helps reinforce and teach sexism to the users of that language. Language feeds back the sexism, sexism feeds back through language. Treating symptoms of disease alone will not eliminate the disease, but may help, while…

Dynamic phasing of multichannel cw laser radiation by means of a stochastic gradient algorithm

DOE Office of Scientific and Technical Information (OSTI.GOV)

Volkov, V A; Volkov, M V; Garanin, S G

2013-09-30

The phasing of a multichannel laser beam by means of an iterative stochastic parallel gradient (SPG) algorithm has been numerically and experimentally investigated. The operation of the SPG algorithm is simulated, the acceptable range of amplitudes of probe phase shifts is found, and the algorithm parameters at which the desired Strehl number can be obtained with a minimum number of iterations are determined. An experimental bench with phase modulators based on lithium niobate, which are controlled by a multichannel electronic unit with a real-time microcontroller, has been designed. Phasing of 16 cw laser beams at a system response bandwidth ofmore » 3.7 kHz and phase thermal distortions in a frequency band of about 10 Hz is experimentally demonstrated. The experimental data are in complete agreement with the calculation results. (control of laser radiation parameters)« less

Automated Phase Segmentation for Large-Scale X-ray Diffraction Data Using a Graph-Based Phase Segmentation (GPhase) Algorithm.

PubMed

Xiong, Zheng; He, Yinyan; Hattrick-Simpers, Jason R; Hu, Jianjun

2017-03-13

The creation of composition-processing-structure relationships currently represents a key bottleneck for data analysis for high-throughput experimental (HTE) material studies. Here we propose an automated phase diagram attribution algorithm for HTE data analysis that uses a graph-based segmentation algorithm and Delaunay tessellation to create a crystal phase diagram from high throughput libraries of X-ray diffraction (XRD) patterns. We also propose the sample-pair based objective evaluation measures for the phase diagram prediction problem. Our approach was validated using 278 diffraction patterns from a Fe-Ga-Pd composition spread sample with a prediction precision of 0.934 and a Matthews Correlation Coefficient score of 0.823. The algorithm was then applied to the open Ni-Mn-Al thin-film composition spread sample to obtain the first predicted phase diagram mapping for that sample.

Holographic near-eye display system based on double-convergence light Gerchberg-Saxton algorithm.

PubMed

Sun, Peng; Chang, Shengqian; Liu, Siqi; Tao, Xiao; Wang, Chang; Zheng, Zhenrong

2018-04-16

In this paper, a method is proposed to implement noises reduced three-dimensional (3D) holographic near-eye display by phase-only computer-generated hologram (CGH). The CGH is calculated from a double-convergence light Gerchberg-Saxton (GS) algorithm, in which the phases of two virtual convergence lights are introduced into GS algorithm simultaneously. The first phase of convergence light is a replacement of random phase as the iterative initial value and the second phase of convergence light will modulate the phase distribution calculated by GS algorithm. Both simulations and experiments are carried out to verify the feasibility of the proposed method. The results indicate that this method can effectively reduce the noises in the reconstruction. Field of view (FOV) of the reconstructed image reaches 40 degrees and experimental light path in the 4-f system is shortened. As for 3D experiments, the results demonstrate that the proposed algorithm can present 3D images with 180cm zooming range and continuous depth cues. This method may provide a promising solution in future 3D augmented reality (AR) realization.

Wavelet phase extracting demodulation algorithm based on scale factor for optical fiber Fabry-Perot sensing.

PubMed

Zhang, Baolin; Tong, Xinglin; Hu, Pan; Guo, Qian; Zheng, Zhiyuan; Zhou, Chaoran

2016-12-26

Optical fiber Fabry-Perot (F-P) sensors have been used in various on-line monitoring of physical parameters such as acoustics, temperature and pressure. In this paper, a wavelet phase extracting demodulation algorithm for optical fiber F-P sensing is first proposed. In application of this demodulation algorithm, search range of scale factor is determined by estimated cavity length which is obtained by fast Fourier transform (FFT) algorithm. Phase information of each point on the optical interference spectrum can be directly extracted through the continuous complex wavelet transform without de-noising. And the cavity length of the optical fiber F-P sensor is calculated by the slope of fitting curve of the phase. Theorical analysis and experiment results show that this algorithm can greatly reduce the amount of computation and improve demodulation speed and accuracy.

Design and Implementation of Hybrid CORDIC Algorithm Based on Phase Rotation Estimation for NCO

PubMed Central

Zhang, Chaozhu; Han, Jinan; Li, Ke

2014-01-01

The numerical controlled oscillator has wide application in radar, digital receiver, and software radio system. Firstly, this paper introduces the traditional CORDIC algorithm. Then in order to improve computing speed and save resources, this paper proposes a kind of hybrid CORDIC algorithm based on phase rotation estimation applied in numerical controlled oscillator (NCO). Through estimating the direction of part phase rotation, the algorithm reduces part phase rotation and add-subtract unit, so that it decreases delay. Furthermore, the paper simulates and implements the numerical controlled oscillator by Quartus II software and Modelsim software. Finally, simulation results indicate that the improvement over traditional CORDIC algorithm is achieved in terms of ease of computation, resource utilization, and computing speed/delay while maintaining the precision. It is suitable for high speed and precision digital modulation and demodulation. PMID:25110750

Score-Level Fusion of Phase-Based and Feature-Based Fingerprint Matching Algorithms

NASA Astrophysics Data System (ADS)

Ito, Koichi; Morita, Ayumi; Aoki, Takafumi; Nakajima, Hiroshi; Kobayashi, Koji; Higuchi, Tatsuo

This paper proposes an efficient fingerprint recognition algorithm combining phase-based image matching and feature-based matching. In our previous work, we have already proposed an efficient fingerprint recognition algorithm using Phase-Only Correlation (POC), and developed commercial fingerprint verification units for access control applications. The use of Fourier phase information of fingerprint images makes it possible to achieve robust recognition for weakly impressed, low-quality fingerprint images. This paper presents an idea of improving the performance of POC-based fingerprint matching by combining it with feature-based matching, where feature-based matching is introduced in order to improve recognition efficiency for images with nonlinear distortion. Experimental evaluation using two different types of fingerprint image databases demonstrates efficient recognition performance of the combination of the POC-based algorithm and the feature-based algorithm.

GPU-accelerated phase extraction algorithm for interferograms: a real-time application

NASA Astrophysics Data System (ADS)

Zhu, Xiaoqiang; Wu, Yongqian; Liu, Fengwei

2016-11-01

Optical testing, having the merits of non-destruction and high sensitivity, provides a vital guideline for optical manufacturing. But the testing process is often computationally intensive and expensive, usually up to a few seconds, which is sufferable for dynamic testing. In this paper, a GPU-accelerated phase extraction algorithm is proposed, which is based on the advanced iterative algorithm. The accelerated algorithm can extract the right phase-distribution from thirteen 1024x1024 fringe patterns with arbitrary phase shifts in 233 milliseconds on average using NVIDIA Quadro 4000 graphic card, which achieved a 12.7x speedup ratio than the same algorithm executed on CPU and 6.6x speedup ratio than that on Matlab using DWANING W5801 workstation. The performance improvement can fulfill the demand of computational accuracy and real-time application.

Merging of an EET CInSAR DEM with the SRTM DEM

NASA Astrophysics Data System (ADS)

Wegmuller, Urs; Wiesmann, Andreas; Santoro, Maurizio

2010-03-01

Cross-interferometry (CInSAR) using ERS-2 and ENVISAT ASAR SAR data acquired in the ERS like mode IS2 at VV-polarization with perpendicular baselines of approximately 2 kilometers permits generation of digital elevation models (DEMs). Thanks to the long perpendicular baselines CInSAR has a good potential to generate accurate DEMs over relatively flat terrain. Over sloped terrain the topographic phase gradients get very high and the signals decorrelate if the carrier frequency difference and the baseline effects do not compensate any more. As a result phase unwrapping gets very difficult so that often no reliable solution is obtained for hilly terrain, resulting in DEMs with significant spatial gaps.Spatial gaps in ERS-2 ENVISAT Tandem (EET) CInSAR DEMs over hilly terrain are clearly an important limitation to the utility of these DEMs. On the other hand the high quality achieved over relatively flat terrain is of high interest. As an attempt to significantly improve the utility of the "good information" contained in the CInSAR DEM we developed a methodology to merge a CInSAR DEM with another available DEM, e.g. the SRTM DEM.The methodology was applied to an area in California, USA, including relatively flat terrain belonging to the Mohave desert as well as hilly to mountainous terrain of the San Gabriel and Tehachapi Mountains.

LSPV+7, a branch-point-tolerant reconstructor for strong turbulence adaptive optics.

PubMed

Steinbock, Michael J; Hyde, Milo W; Schmidt, Jason D

2014-06-20

Optical wave propagation through long paths of extended turbulence presents unique challenges to adaptive optics (AO) systems. As scintillation and branch points develop in the beacon phase, challenges arise in accurately unwrapping the received wavefront and optimizing the reconstructed phase with respect to branch cut placement on a continuous facesheet deformable mirror. Several applications are currently restricted by these capability limits: laser communication, laser weapons, remote sensing, and ground-based astronomy. This paper presents a set of temporally evolving AO simulations comparing traditional least-squares reconstruction techniques to a complex-exponential reconstructor and several other reconstructors derived from the postprocessing congruence operation. The reconstructors' behavior in closed-loop operation is compared and discussed, providing several insights into the fundamental strengths and limitations of each reconstructor type. This research utilizes a self-referencing interferometer (SRI) as the high-order wavefront sensor, driving a traditional linear control law in conjunction with a cooperative point source beacon. The SRI model includes practical optical considerations and frame-by-frame fiber coupling effects to allow for realistic noise modeling. The "LSPV+7" reconstructor is shown to offer the best performance in terms of Strehl ratio and correction stability-outperforming the traditional least-squares reconstructed system by an average of 120% in the studied scenarios. Utilizing a continuous facesheet deformable mirror, these reconstructors offer significant AO performance improvements in strong turbulence applications without the need for segmented deformable mirrors.

Numerical phase retrieval from beam intensity measurements in three planes

NASA Astrophysics Data System (ADS)

Bruel, Laurent

2003-05-01

A system and method have been developed at CEA to retrieve phase information from multiple intensity measurements along a laser beam. The device has been patented. Commonly used devices for beam measurement provide phase and intensity information separately or with a rather poor resolution whereas the MIROMA method provides both at the same time, allowing direct use of the results in numerical models. Usual phase retrieval algorithms use two intensity measurements, typically the image plane and the focal plane (Gerschberg-Saxton algorithm) related by a Fourier transform, or the image plane and a lightly defocus plane (D.L. Misell). The principal drawback of such iterative algorithms is their inability to provide unambiguous convergence in all situations. The algorithms can stagnate on bad solutions and the error between measured and calculated intensities remains unacceptable. If three planes rather than two are used, the data redundancy created confers to the method good convergence capability and noise immunity. It provides an excellent agreement between intensity determined from the retrieved phase data set in the image plane and intensity measurements in any diffraction plane. The method employed for MIROMA is inspired from GS algorithm, replacing Fourier transforms by a beam-propagating kernel with gradient search accelerating techniques and special care for phase branch cuts. A fast one dimensional algorithm provides an initial guess for the iterative algorithm. Applications of the algorithm on synthetic data find out the best reconstruction planes that have to be chosen. Robustness and sensibility are evaluated. Results on collimated and distorted laser beams are presented.

Refining the Magnitude of the Shallow Slip Deficit

NASA Astrophysics Data System (ADS)

Xu, X.; Tong, X.; Sandwell, D. T.; Milliner, C. W. D.

2014-12-01

Geodetic inversions for slip versus depth for several major (Mw > 7) strike-slip earthquakes (e.g. 1992 Landers, 1999 Hector Mine, 2010 El_Mayor-Cucapah) show a 10% to 40% reduction in slip near surface (depth < 2 km) compared to the slip at deeper depths (5 to 8 km). This has been called the shallow slip deficit (SSD). The large magnitude of this deficit has been an enigma since it cannot be explained by shallow creep during the interseismic period or by triggered slip from nearby earthquakes. One potential explanation for the SSD is that the previous geodetic inversions used incomplete data that do not go close to fault so the shallow portions of the slip models were poorly resolved and generally underestimated. In this study we improve the geodetic inversion, especially at shallow depth by: 1) refining the InSAR processing with non-boxcar phase filtering, model-dependent range corrections, more complete phase unwrapping by SNAPHU using a correlation mask and allowing a phase discontinuity along the rupture; 2) including near-fault offset data from optical imagery and SAR azimuth offsets; 3) using more detailed fault geometry; 4) and using additional campaign GPS data. With these improved observations, the slip inversion has significantly increased resolution at shallow depth. For the Landers rupture the SSD is reduced from 45% to 16%. Similarly for the Hector Mine rupture the SSD is reduced from 15% to 5%. We are assembling all the relevant co-seismic data for the El Major-Cucapah earthquake and will report the inversion result with its SSD at the meeting.

Online Phase Detection Using Wearable Sensors for Walking with a Robotic Prosthesis

PubMed Central

Goršič, Maja; Kamnik, Roman; Ambrožič, Luka; Vitiello, Nicola; Lefeber, Dirk; Pasquini, Guido; Munih, Marko

2014-01-01

This paper presents a gait phase detection algorithm for providing feedback in walking with a robotic prosthesis. The algorithm utilizes the output signals of a wearable wireless sensory system incorporating sensorized shoe insoles and inertial measurement units attached to body segments. The principle of detecting transitions between gait phases is based on heuristic threshold rules, dividing a steady-state walking stride into four phases. For the evaluation of the algorithm, experiments with three amputees, walking with the robotic prosthesis and wearable sensors, were performed. Results show a high rate of successful detection for all four phases (the average success rate across all subjects >90%). A comparison of the proposed method to an off-line trained algorithm using hidden Markov models reveals a similar performance achieved without the need for learning dataset acquisition and previous model training. PMID:24521944

Accurate phase extraction algorithm based on Gram–Schmidt orthonormalization and least square ellipse fitting method

NASA Astrophysics Data System (ADS)

Lei, Hebing; Yao, Yong; Liu, Haopeng; Tian, Yiting; Yang, Yanfu; Gu, Yinglong

2018-06-01

An accurate algorithm by combing Gram-Schmidt orthonormalization and least square ellipse fitting technology is proposed, which could be used for phase extraction from two or three interferograms. The DC term of background intensity is suppressed by subtraction operation on three interferograms or by high-pass filter on two interferograms. Performing Gram-Schmidt orthonormalization on pre-processing interferograms, the phase shift error is corrected and a general ellipse form is derived. Then the background intensity error and the corrected error could be compensated by least square ellipse fitting method. Finally, the phase could be extracted rapidly. The algorithm could cope with the two or three interferograms with environmental disturbance, low fringe number or small phase shifts. The accuracy and effectiveness of the proposed algorithm are verified by both of the numerical simulations and experiments.

Iterative Code-Aided ML Phase Estimation and Phase Ambiguity Resolution

NASA Astrophysics Data System (ADS)

Wymeersch, Henk; Moeneclaey, Marc

2005-12-01

As many coded systems operate at very low signal-to-noise ratios, synchronization becomes a very difficult task. In many cases, conventional algorithms will either require long training sequences or result in large BER degradations. By exploiting code properties, these problems can be avoided. In this contribution, we present several iterative maximum-likelihood (ML) algorithms for joint carrier phase estimation and ambiguity resolution. These algorithms operate on coded signals by accepting soft information from the MAP decoder. Issues of convergence and initialization are addressed in detail. Simulation results are presented for turbo codes, and are compared to performance results of conventional algorithms. Performance comparisons are carried out in terms of BER performance and mean square estimation error (MSEE). We show that the proposed algorithm reduces the MSEE and, more importantly, the BER degradation. Additionally, phase ambiguity resolution can be performed without resorting to a pilot sequence, thus improving the spectral efficiency.

Phase retrieval in generalized optical interferometry systems.

PubMed

Farriss, Wesley E; Fienup, James R; Malhotra, Tanya; Vamivakas, A Nick

2018-02-05

Modal analysis of an optical field via generalized interferometry (GI) is a novel technique that treats said field as a linear superposition of transverse modes and recovers the amplitudes of modal weighting coefficients. We use phase retrieval by nonlinear optimization to recover the phase of these modal weighting coefficients. Information diversity increases the robustness of the algorithm by better constraining the solution. Additionally, multiple sets of random starting phase values assist the algorithm in overcoming local minima. The algorithm was able to recover nearly all coefficient phases for simulated fields consisting of up to 21 superpositioned Hermite Gaussian modes from simulated data and proved to be resilient to shot noise.

Image reconstruction through thin scattering media by simulated annealing algorithm

NASA Astrophysics Data System (ADS)

Fang, Longjie; Zuo, Haoyi; Pang, Lin; Yang, Zuogang; Zhang, Xicheng; Zhu, Jianhua

2018-07-01

An idea for reconstructing the image of an object behind thin scattering media is proposed by phase modulation. The optimized phase mask is achieved by modulating the scattered light using simulated annealing algorithm. The correlation coefficient is exploited as a fitness function to evaluate the quality of reconstructed image. The reconstructed images optimized from simulated annealing algorithm and genetic algorithm are compared in detail. The experimental results show that our proposed method has better definition and higher speed than genetic algorithm.

Evaluation of an Algorithm to Predict Menstrual-Cycle Phase at the Time of Injury.

PubMed

Tourville, Timothy W; Shultz, Sandra J; Vacek, Pamela M; Knudsen, Emily J; Bernstein, Ira M; Tourville, Kelly J; Hardy, Daniel M; Johnson, Robert J; Slauterbeck, James R; Beynnon, Bruce D

2016-01-01

Women are 2 to 8 times more likely to sustain an anterior cruciate ligament (ACL) injury than men, and previous studies indicated an increased risk for injury during the preovulatory phase of the menstrual cycle (MC). However, investigations of risk rely on retrospective classification of MC phase, and no tools for this have been validated. To evaluate the accuracy of an algorithm for retrospectively classifying MC phase at the time of a mock injury based on MC history and salivary progesterone (P4) concentration. Descriptive laboratory study. Research laboratory. Thirty-one healthy female collegiate athletes (age range, 18-24 years) provided serum or saliva (or both) samples at 8 visits over 1 complete MC. Self-reported MC information was obtained on a randomized date (1-45 days) after mock injury, which is the typical timeframe in which researchers have access to ACL-injured study participants. The MC phase was classified using the algorithm as applied in a stand-alone computational fashion and also by 4 clinical experts using the algorithm and additional subjective hormonal history information to help inform their decision. To assess algorithm accuracy, phase classifications were compared with the actual MC phase at the time of mock injury (ascertained using urinary luteinizing hormone tests and serial serum P4 samples). Clinical expert and computed classifications were compared using κ statistics. Fourteen participants (45%) experienced anovulatory cycles. The algorithm correctly classified MC phase for 23 participants (74%): 22 (76%) of 29 who were preovulatory/anovulatory and 1 (50%) of 2 who were postovulatory. Agreement between expert and algorithm classifications ranged from 80.6% (κ = 0.50) to 93% (κ = 0.83). Classifications based on same-day saliva sample and optimal P4 threshold were the same as those based on MC history alone (87.1% correct). Algorithm accuracy varied during the MC but at no time were both sensitivity and specificity levels acceptable. These findings raise concerns about the accuracy of previous retrospective MC-phase classification systems, particularly in a population with a high occurrence of anovulatory cycles.

Toward Improved Methods of Estimating Attenuation, Phase and Group velocity of surface waves observed on Shallow Seismic Records

NASA Astrophysics Data System (ADS)

Diallo, M. S.; Holschneider, M.; Kulesh, M.; Scherbaum, F.; Ohrnberger, M.; Lück, E.

2004-05-01

This contribution is concerned with the estimate of attenuation and dispersion characteristics of surface waves observed on a shallow seismic record. The analysis is based on a initial parameterization of the phase and attenuation functions which are then estimated by minimizing a properly defined merit function. To minimize the effect of random noise on the estimates of dispersion and attenuation we use cross-correlations (in Fourier domain) of preselected traces from some region of interest along the survey line. These cross-correlations are then expressed in terms of the parameterized attenuation and phase functions and the auto-correlation of the so-called source trace or reference trace. Cross-corelation that enter the optimization are selected so as to provide an average estimate of both the attenuation function and the phase (group) velocity of the area under investigation. The advantage of the method over the standard two stations method using Fourier technique is that uncertainties related to the phase unwrapping and the estimate of the number of 2π cycle skip in the phase phase are eliminated. However when mutliple modes arrival are observed, its become merely impossible to obtain reliable estimate the dipsersion curves for the different modes using optimization method alone. To circumvent this limitations we using the presented approach in conjunction with the wavelet propagation operator (Kulesh et al., 2003) which allows the application of band pass filtering in (ω -t) domain, to select a particular mode for the minimization. Also by expressing the cost function in the wavelet domain the optimization can be performed either with respect to the phase, the modulus of the transform or a combination of both. This flexibility in the design of the cost function provides an additional mean of constraining the optimization results. Results from the application of this dispersion and attenuation analysis method are shown for both synthetic and real 2D shallow seismic data sets. M. Kulesh, M. Holschneider, M. S. Diallo, Q. Xie and F. Scherbaum, Modeling of Wave Dispersion Using Wavelet Transfrom (Submitted to Pure and Applied Geophysics).

SU-E-J-215: Towards MR-Only Image Guided Identification of Calcifications and Brachytherapy Seeds: Application to Prostate and Breast LDR Implant Dosimetry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Elzibak, A; Fatemi-Ardekani, A; Soliman, A

Purpose: To identify and analyze the appearance of calcifications and brachytherapy seeds on magnitude and phase MRI images and to investigate whether they can be distinguished from each other on corrected phase images for application to prostate and breast low dose rate (LDR) implant dosimetry. Methods: An agar-based gel phantom containing two LDR brachytherapy seeds (Advantage Pd-103, IsoAid, 0.8mm diameter, 4.5mm length) and two spherical calcifications (large: 7mm diameter and small: 4mm diameter) was constructed and imaged on a 3T Philips MR scanner using a 16-channel head coil and a susceptibility weighted imaging (SWI) sequence (2mm slices, 320mm FOV, TR/more » TE= 26.5/5.3ms, 15 degree flip angle). The phase images were unwrapped and corrected using a 32×32, 2D Hanning high pass filter to remove background phase noise. Appearance of the seeds and calcifications was assessed visually and quantitatively using Osirix (http://www.osirix-viewer.com/). Results: As expected, calcifications and brachytherapy seeds appeared dark (hypointense) relative to the surrounding gel on the magnitude MRI images. The diameter of each seed without the surrounding artifact was measured to be 0.1 cm on the magnitude image, while diameters of 0.79 and 0.37 cm were measured for the larger and smaller calcifications, respectively. On the corrected phase images, the brachytherapy seeds and the calcifications appeared bright (hyperintense). The diameter of the seeds was larger on the phase images (0.17 cm) likely due to the dipole effect. Conclusion: MRI has the best soft tissue contrast for accurate organ delineation leading to most accurate implant dosimetry. This work demonstrated that phase images can potentially be useful in identifying brachytherapy seeds and calcifications in the prostate and breast due to their bright appearance, which helps in their visualization and quantification for accurate dosimetry using MR-only. Future work includes optimizing phase filters to best identify and delineate seeds and calcifications.« less

Build Up and Operation of an Axial Turbine Driven by a Rotary Detonation Engine

DTIC Science & Technology

2012-03-01

RDEs) offer advantages over pulsed detonation engines ( PDEs ) due to a steadier exhaust and fewer total system losses. All previous research on...turbine integration with detonation combustors has focused on utilizing PDEs to drive axial and centrifugal turbines. The objective of this thesis was... detonation engine ............................................. 5 Figure 4. Schematic of the rotating detonation wave structure for an unwrapped view of an

The Gift Relationship: Discovering Gift Exchange in Interpersonal Practice.

PubMed

Brown, Christopher Basil

2016-03-01

Encountering the deeper flows of human experience and glimpsing the touch of the divine on the human soul offer guides and companions rich reflective content for their ongoing formation. This is a precious gift which pilgrims constantly place before their companions, though at times it remains 'unwrapped'. Through offering a supervision narrative, this paper provides a phenomenological description of such a gift exchange. © The Author(s) 2016.

School Food Unwrapped: What's Available and What Our Kids Actually Are Eating. Research Brief. Publication #2008-40

ERIC Educational Resources Information Center

Hair, Elizabeth; Ling, Thomson; Wandner, Laura

2008-01-01

Childhood obesity has emerged as a critical health problem of the 21st century. The seriousness of this issue stems from the grave health consequences of overweight and obesity that begin in child-hood and persist later in life. In light of these consequences, public health officials and others have begun to focus on schools as key settings in…

Development and validation of an algorithm for identifying urinary retention in a cohort of patients with epilepsy in a large US administrative claims database.

PubMed

Quinlan, Scott C; Cheng, Wendy Y; Ishihara, Lianna; Irizarry, Michael C; Holick, Crystal N; Duh, Mei Sheng

2016-04-01

The aim of this study was to develop and validate an insurance claims-based algorithm for identifying urinary retention (UR) in epilepsy patients receiving antiepileptic drugs to facilitate safety monitoring. Data from the HealthCore Integrated Research Database(SM) in 2008-2011 (retrospective) and 2012-2013 (prospective) were used to identify epilepsy patients with UR. During the retrospective phase, three algorithms identified potential UR: (i) UR diagnosis code with a catheterization procedure code; (ii) UR diagnosis code alone; or (iii) diagnosis with UR-related symptoms. Medical records for 50 randomly selected patients satisfying ≥1 algorithm were reviewed by urologists to ascertain UR status. Positive predictive value (PPV) and 95% confidence intervals (CI) were calculated for the three component algorithms and the overall algorithm (defined as satisfying ≥1 component algorithms). Algorithms were refined using urologist review notes. In the prospective phase, the UR algorithm was refined using medical records for an additional 150 cases. In the retrospective phase, the PPV of the overall algorithm was 72.0% (95%CI: 57.5-83.8%). Algorithm 3 performed poorly and was dropped. Algorithm 1 was unchanged; urinary incontinence and cystitis were added as exclusionary diagnoses to Algorithm 2. The PPV for the modified overall algorithm was 89.2% (74.6-97.0%). In the prospective phase, the PPV for the modified overall algorithm was 76.0% (68.4-82.6%). Upon adding overactive bladder, nocturia and urinary frequency as exclusionary diagnoses, the PPV for the final overall algorithm was 81.9% (73.7-88.4%). The current UR algorithm yielded a PPV > 80% and could be used for more accurate identification of UR among epilepsy patients in a large claims database. Copyright © 2016 John Wiley & Sons, Ltd.

Optimal signal constellation design for ultra-high-speed optical transport in the presence of nonlinear phase noise.

PubMed

Liu, Tao; Djordjevic, Ivan B

2014-12-29

In this paper, we first describe an optimal signal constellation design algorithm suitable for the coherent optical channels dominated by the linear phase noise. Then, we modify this algorithm to be suitable for the nonlinear phase noise dominated channels. In optimization procedure, the proposed algorithm uses the cumulative log-likelihood function instead of the Euclidian distance. Further, an LDPC coded modulation scheme is proposed to be used in combination with signal constellations obtained by proposed algorithm. Monte Carlo simulations indicate that the LDPC-coded modulation schemes employing the new constellation sets, obtained by our new signal constellation design algorithm, outperform corresponding QAM constellations significantly in terms of transmission distance and have better nonlinearity tolerance.

Improved adaptive genetic algorithm with sparsity constraint applied to thermal neutron CT reconstruction of two-phase flow

NASA Astrophysics Data System (ADS)

Yan, Mingfei; Hu, Huasi; Otake, Yoshie; Taketani, Atsushi; Wakabayashi, Yasuo; Yanagimachi, Shinzo; Wang, Sheng; Pan, Ziheng; Hu, Guang

2018-05-01

Thermal neutron computer tomography (CT) is a useful tool for visualizing two-phase flow due to its high imaging contrast and strong penetrability of neutrons for tube walls constructed with metallic material. A novel approach for two-phase flow CT reconstruction based on an improved adaptive genetic algorithm with sparsity constraint (IAGA-SC) is proposed in this paper. In the algorithm, the neighborhood mutation operator is used to ensure the continuity of the reconstructed object. The adaptive crossover probability P c and mutation probability P m are improved to help the adaptive genetic algorithm (AGA) achieve the global optimum. The reconstructed results for projection data, obtained from Monte Carlo simulation, indicate that the comprehensive performance of the IAGA-SC algorithm exceeds the adaptive steepest descent-projection onto convex sets (ASD-POCS) algorithm in restoring typical and complex flow regimes. It especially shows great advantages in restoring the simply connected flow regimes and the shape of object. In addition, the CT experiment for two-phase flow phantoms was conducted on the accelerator-driven neutron source to verify the performance of the developed IAGA-SC algorithm.

SU-D-17A-02: Four-Dimensional CBCT Using Conventional CBCT Dataset and Iterative Subtraction Algorithm of a Lung Patient

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hu, E; Lasio, G; Yi, B

2014-06-01

Purpose: The Iterative Subtraction Algorithm (ISA) method generates retrospectively a pre-selected motion phase cone-beam CT image from the full motion cone-beam CT acquired at standard rotation speed. This work evaluates ISA method with real lung patient data. Methods: The goal of the ISA algorithm is to extract motion and no- motion components form the full reconstruction CBCT. The workflow consists of subtracting from the full CBCT all of the undesired motion phases and obtain a motion de-blurred single-phase CBCT image, followed by iteration of this subtraction process. ISA is realized as follows: 1) The projections are sorted to various phases,more » and from all phases, a full reconstruction is performed to generate an image CTM. 2) Generate forward projections of CTM at the desired phase projection angles, the subtraction of projection and the forward projection will reconstruct a CTSub1, which diminishes the desired phase component. 3) By adding back the CTSub1 to CTm, no motion CBCT, CTS1, can be computed. 4) CTS1 still contains residual motion component. 5) This residual motion component can be further reduced by iteration.The ISA 4DCBCT technique was implemented using Varian Trilogy accelerator OBI system. To evaluate the method, a lung patient CBCT dataset was used. The reconstruction algorithm is FDK. Results: The single phase CBCT reconstruction generated via ISA successfully isolates the desired motion phase from the full motion CBCT, effectively reducing motion blur. It also shows improved image quality, with reduced streak artifacts with respect to the reconstructions from unprocessed phase-sorted projections only. Conclusion: A CBCT motion de-blurring algorithm, ISA, has been developed and evaluated with lung patient data. The algorithm allows improved visualization of a single phase motion extracted from a standard CBCT dataset. This study has been supported by National Institute of Health through R01CA133539.« less

Experimental determination of pore shapes using phase retrieval from q -space NMR diffraction

NASA Astrophysics Data System (ADS)

Demberg, Kerstin; Laun, Frederik Bernd; Bertleff, Marco; Bachert, Peter; Kuder, Tristan Anselm

2018-05-01

This paper presents an approach to solving the phase problem in nuclear magnetic resonance (NMR) diffusion pore imaging, a method that allows imaging the shape of arbitrary closed pores filled with an NMR-detectable medium for investigation of the microstructure of biological tissue and porous materials. Classical q -space imaging composed of two short diffusion-encoding gradient pulses yields, analogously to diffraction experiments, the modulus squared of the Fourier transform of the pore image which entails an inversion problem: An unambiguous reconstruction of the pore image requires both magnitude and phase. Here the phase information is recovered from the Fourier modulus by applying a phase retrieval algorithm. This allows omitting experimentally challenging phase measurements using specialized temporal gradient profiles. A combination of the hybrid input-output algorithm and the error reduction algorithm was used with dynamically adapting support (shrinkwrap extension). No a priori knowledge on the pore shape was fed to the algorithm except for a finite pore extent. The phase retrieval approach proved successful for simulated data with and without noise and was validated in phantom experiments with well-defined pores using hyperpolarized xenon gas.

Experimental determination of pore shapes using phase retrieval from q-space NMR diffraction.

PubMed

Demberg, Kerstin; Laun, Frederik Bernd; Bertleff, Marco; Bachert, Peter; Kuder, Tristan Anselm

2018-05-01

This paper presents an approach to solving the phase problem in nuclear magnetic resonance (NMR) diffusion pore imaging, a method that allows imaging the shape of arbitrary closed pores filled with an NMR-detectable medium for investigation of the microstructure of biological tissue and porous materials. Classical q-space imaging composed of two short diffusion-encoding gradient pulses yields, analogously to diffraction experiments, the modulus squared of the Fourier transform of the pore image which entails an inversion problem: An unambiguous reconstruction of the pore image requires both magnitude and phase. Here the phase information is recovered from the Fourier modulus by applying a phase retrieval algorithm. This allows omitting experimentally challenging phase measurements using specialized temporal gradient profiles. A combination of the hybrid input-output algorithm and the error reduction algorithm was used with dynamically adapting support (shrinkwrap extension). No a priori knowledge on the pore shape was fed to the algorithm except for a finite pore extent. The phase retrieval approach proved successful for simulated data with and without noise and was validated in phantom experiments with well-defined pores using hyperpolarized xenon gas.

Phase Response Design of Recursive All-Pass Digital Filters Using a Modified PSO Algorithm

PubMed Central

2015-01-01

This paper develops a new design scheme for the phase response of an all-pass recursive digital filter. A variant of particle swarm optimization (PSO) algorithm will be utilized for solving this kind of filter design problem. It is here called the modified PSO (MPSO) algorithm in which another adjusting factor is more introduced in the velocity updating formula of the algorithm in order to improve the searching ability. In the proposed method, all of the designed filter coefficients are firstly collected to be a parameter vector and this vector is regarded as a particle of the algorithm. The MPSO with a modified velocity formula will force all particles into moving toward the optimal or near optimal solution by minimizing some defined objective function of the optimization problem. To show the effectiveness of the proposed method, two different kinds of linear phase response design examples are illustrated and the general PSO algorithm is compared as well. The obtained results show that the MPSO is superior to the general PSO for the phase response design of digital recursive all-pass filter. PMID:26366168

Phase retrieval using regularization method in intensity correlation imaging

NASA Astrophysics Data System (ADS)

Li, Xiyu; Gao, Xin; Tang, Jia; Lu, Changming; Wang, Jianli; Wang, Bin

2014-11-01

Intensity correlation imaging(ICI) method can obtain high resolution image with ground-based low precision mirrors, in the imaging process, phase retrieval algorithm should be used to reconstituted the object's image. But the algorithm now used(such as hybrid input-output algorithm) is sensitive to noise and easy to stagnate. However the signal-to-noise ratio of intensity interferometry is low especially in imaging astronomical objects. In this paper, we build the mathematical model of phase retrieval and simplified it into a constrained optimization problem of a multi-dimensional function. New error function was designed by noise distribution and prior information using regularization method. The simulation results show that the regularization method can improve the performance of phase retrieval algorithm and get better image especially in low SNR condition

Optimized random phase only holograms.

PubMed

Zea, Alejandro Velez; Barrera Ramirez, John Fredy; Torroba, Roberto

2018-02-15

We propose a simple and efficient technique capable of generating Fourier phase only holograms with a reconstruction quality similar to the results obtained with the Gerchberg-Saxton (G-S) algorithm. Our proposal is to use the traditional G-S algorithm to optimize a random phase pattern for the resolution, pixel size, and target size of the general optical system without any specific amplitude data. This produces an optimized random phase (ORAP), which is used for fast generation of phase only holograms of arbitrary amplitude targets. This ORAP needs to be generated only once for a given optical system, avoiding the need for costly iterative algorithms for each new target. We show numerical and experimental results confirming the validity of the proposal.

A Dual-Wavelength Radar Technique to Detect Hydrometeor Phases

NASA Technical Reports Server (NTRS)

Liao, Liang; Meneghini, Robert

2016-01-01

This study is aimed at investigating the feasibility of a Ku- and Ka-band space/air-borne dual wavelength radar algorithm to discriminate various phase states of precipitating hydrometeors. A phase-state classification algorithm has been developed from the radar measurements of snow, mixed-phase and rain obtained from stratiform storms. The algorithm, presented in the form of the look-up table that links the Ku-band radar reflectivities and dual-frequency ratio (DFR) to the phase states of hydrometeors, is checked by applying it to the measurements of the Jet Propulsion Laboratory, California Institute of Technology, Airborne Precipitation Radar Second Generation (APR-2). In creating the statistically-based phase look-up table, the attenuation corrected (or true) radar reflectivity factors are employed, leading to better accuracy in determining the hydrometeor phase. In practice, however, the true radar reflectivities are not always available before the phase states of the hydrometeors are determined. Therefore, it is desirable to make use of the measured radar reflectivities in classifying the phase states. To do this, a phase-identification procedure is proposed that uses only measured radar reflectivities. The procedure is then tested using APR-2 airborne radar data. Analysis of the classification results in stratiform rain indicates that the regions of snow, mixed-phase and rain derived from the phase-identification algorithm coincide reasonably well with those determined from the measured radar reflectivities and linear depolarization ratio (LDR).

Visualizing and improving the robustness of phase retrieval algorithms

DOE PAGES

Tripathi, Ashish; Leyffer, Sven; Munson, Todd; ...

2015-06-01

Coherent x-ray diffractive imaging is a novel imaging technique that utilizes phase retrieval and nonlinear optimization methods to image matter at nanometer scales. We explore how the convergence properties of a popular phase retrieval algorithm, Fienup's HIO, behave by introducing a reduced dimensionality problem allowing us to visualize and quantify convergence to local minima and the globally optimal solution. We then introduce generalizations of HIO that improve upon the original algorithm's ability to converge to the globally optimal solution.

Visualizing and improving the robustness of phase retrieval algorithms

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tripathi, Ashish; Leyffer, Sven; Munson, Todd

Coherent x-ray diffractive imaging is a novel imaging technique that utilizes phase retrieval and nonlinear optimization methods to image matter at nanometer scales. We explore how the convergence properties of a popular phase retrieval algorithm, Fienup's HIO, behave by introducing a reduced dimensionality problem allowing us to visualize and quantify convergence to local minima and the globally optimal solution. We then introduce generalizations of HIO that improve upon the original algorithm's ability to converge to the globally optimal solution.

Adaptive optics compensation of orbital angular momentum beams with a modified Gerchberg-Saxton-based phase retrieval algorithm

NASA Astrophysics Data System (ADS)

Chang, Huan; Yin, Xiao-li; Cui, Xiao-zhou; Zhang, Zhi-chao; Ma, Jian-xin; Wu, Guo-hua; Zhang, Li-jia; Xin, Xiang-jun

2017-12-01

Practical orbital angular momentum (OAM)-based free-space optical (FSO) communications commonly experience serious performance degradation and crosstalk due to atmospheric turbulence. In this paper, we propose a wave-front sensorless adaptive optics (WSAO) system with a modified Gerchberg-Saxton (GS)-based phase retrieval algorithm to correct distorted OAM beams. We use the spatial phase perturbation (SPP) GS algorithm with a distorted probe Gaussian beam as the only input. The principle and parameter selections of the algorithm are analyzed, and the performance of the algorithm is discussed. The simulation results show that the proposed adaptive optics (AO) system can significantly compensate for distorted OAM beams in single-channel or multiplexed OAM systems, which provides new insights into adaptive correction systems using OAM beams.

Experimental Validation of Advanced Dispersed Fringe Sensing (ADFS) Algorithm Using Advanced Wavefront Sensing and Correction Testbed (AWCT)

NASA Technical Reports Server (NTRS)

Wang, Xu; Shi, Fang; Sigrist, Norbert; Seo, Byoung-Joon; Tang, Hong; Bikkannavar, Siddarayappa; Basinger, Scott; Lay, Oliver

2012-01-01

Large aperture telescope commonly features segment mirrors and a coarse phasing step is needed to bring these individual segments into the fine phasing capture range. Dispersed Fringe Sensing (DFS) is a powerful coarse phasing technique and its alteration is currently being used for JWST.An Advanced Dispersed Fringe Sensing (ADFS) algorithm is recently developed to improve the performance and robustness of previous DFS algorithms with better accuracy and unique solution. The first part of the paper introduces the basic ideas and the essential features of the ADFS algorithm and presents the some algorithm sensitivity study results. The second part of the paper describes the full details of algorithm validation process through the advanced wavefront sensing and correction testbed (AWCT): first, the optimization of the DFS hardware of AWCT to ensure the data accuracy and reliability is illustrated. Then, a few carefully designed algorithm validation experiments are implemented, and the corresponding data analysis results are shown. Finally the fiducial calibration using Range-Gate-Metrology technique is carried out and a <10nm or <1% algorithm accuracy is demonstrated.

Using Radar, Lidar, and Radiometer measurements to Classify Cloud Type and Study Middle-Level Cloud Properties

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Zhien

2010-06-29

The project is mainly focused on the characterization of cloud macrophysical and microphysical properties, especially for mixed-phased clouds and middle level ice clouds by combining radar, lidar, and radiometer measurements available from the ACRF sites. First, an advanced mixed-phase cloud retrieval algorithm will be developed to cover all mixed-phase clouds observed at the ACRF NSA site. The algorithm will be applied to the ACRF NSA observations to generate a long-term arctic mixed-phase cloud product for model validations and arctic mixed-phase cloud processes studies. To improve the representation of arctic mixed-phase clouds in GCMs, an advanced understanding of mixed-phase cloud processesmore » is needed. By combining retrieved mixed-phase cloud microphysical properties with in situ data and large-scale meteorological data, the project aim to better understand the generations of ice crystals in supercooled water clouds, the maintenance mechanisms of the arctic mixed-phase clouds, and their connections with large-scale dynamics. The project will try to develop a new retrieval algorithm to study more complex mixed-phase clouds observed at the ACRF SGP site. Compared with optically thin ice clouds, optically thick middle level ice clouds are less studied because of limited available tools. The project will develop a new two wavelength radar technique for optically thick ice cloud study at SGP site by combining the MMCR with the W-band radar measurements. With this new algorithm, the SGP site will have a better capability to study all ice clouds. Another area of the proposal is to generate long-term cloud type classification product for the multiple ACRF sites. The cloud type classification product will not only facilitates the generation of the integrated cloud product by applying different retrieval algorithms to different types of clouds operationally, but will also support other research to better understand cloud properties and to validate model simulations. The ultimate goal is to improve our cloud classification algorithm into a VAP.« less

Bare-Bones Teaching-Learning-Based Optimization

PubMed Central

Zou, Feng; Wang, Lei; Hei, Xinhong; Chen, Debao; Jiang, Qiaoyong; Li, Hongye

2014-01-01

Teaching-learning-based optimization (TLBO) algorithm which simulates the teaching-learning process of the class room is one of the recently proposed swarm intelligent (SI) algorithms. In this paper, a new TLBO variant called bare-bones teaching-learning-based optimization (BBTLBO) is presented to solve the global optimization problems. In this method, each learner of teacher phase employs an interactive learning strategy, which is the hybridization of the learning strategy of teacher phase in the standard TLBO and Gaussian sampling learning based on neighborhood search, and each learner of learner phase employs the learning strategy of learner phase in the standard TLBO or the new neighborhood search strategy. To verify the performance of our approaches, 20 benchmark functions and two real-world problems are utilized. Conducted experiments can been observed that the BBTLBO performs significantly better than, or at least comparable to, TLBO and some existing bare-bones algorithms. The results indicate that the proposed algorithm is competitive to some other optimization algorithms. PMID:25013844

Bare-bones teaching-learning-based optimization.

PubMed

Zou, Feng; Wang, Lei; Hei, Xinhong; Chen, Debao; Jiang, Qiaoyong; Li, Hongye

2014-01-01

Teaching-learning-based optimization (TLBO) algorithm which simulates the teaching-learning process of the class room is one of the recently proposed swarm intelligent (SI) algorithms. In this paper, a new TLBO variant called bare-bones teaching-learning-based optimization (BBTLBO) is presented to solve the global optimization problems. In this method, each learner of teacher phase employs an interactive learning strategy, which is the hybridization of the learning strategy of teacher phase in the standard TLBO and Gaussian sampling learning based on neighborhood search, and each learner of learner phase employs the learning strategy of learner phase in the standard TLBO or the new neighborhood search strategy. To verify the performance of our approaches, 20 benchmark functions and two real-world problems are utilized. Conducted experiments can been observed that the BBTLBO performs significantly better than, or at least comparable to, TLBO and some existing bare-bones algorithms. The results indicate that the proposed algorithm is competitive to some other optimization algorithms.

A novel hybrid meta-heuristic technique applied to the well-known benchmark optimization problems

NASA Astrophysics Data System (ADS)

Abtahi, Amir-Reza; Bijari, Afsane

2017-03-01

In this paper, a hybrid meta-heuristic algorithm, based on imperialistic competition algorithm (ICA), harmony search (HS), and simulated annealing (SA) is presented. The body of the proposed hybrid algorithm is based on ICA. The proposed hybrid algorithm inherits the advantages of the process of harmony creation in HS algorithm to improve the exploitation phase of the ICA algorithm. In addition, the proposed hybrid algorithm uses SA to make a balance between exploration and exploitation phases. The proposed hybrid algorithm is compared with several meta-heuristic methods, including genetic algorithm (GA), HS, and ICA on several well-known benchmark instances. The comprehensive experiments and statistical analysis on standard benchmark functions certify the superiority of the proposed method over the other algorithms. The efficacy of the proposed hybrid algorithm is promising and can be used in several real-life engineering and management problems.

Sequential processing of quantitative phase images for the study of cell behaviour in real-time digital holographic microscopy.

PubMed

Zikmund, T; Kvasnica, L; Týč, M; Křížová, A; Colláková, J; Chmelík, R

2014-11-01

Transmitted light holographic microscopy is particularly used for quantitative phase imaging of transparent microscopic objects such as living cells. The study of the cell is based on extraction of the dynamic data on cell behaviour from the time-lapse sequence of the phase images. However, the phase images are affected by the phase aberrations that make the analysis particularly difficult. This is because the phase deformation is prone to change during long-term experiments. Here, we present a novel algorithm for sequential processing of living cells phase images in a time-lapse sequence. The algorithm compensates for the deformation of a phase image using weighted least-squares surface fitting. Moreover, it identifies and segments the individual cells in the phase image. All these procedures are performed automatically and applied immediately after obtaining every single phase image. This property of the algorithm is important for real-time cell quantitative phase imaging and instantaneous control of the course of the experiment by playback of the recorded sequence up to actual time. Such operator's intervention is a forerunner of process automation derived from image analysis. The efficiency of the propounded algorithm is demonstrated on images of rat fibrosarcoma cells using an off-axis holographic microscope. © 2014 The Authors Journal of Microscopy © 2014 Royal Microscopical Society.

Design of recursive digital filters having specified phase and magnitude characteristics

NASA Technical Reports Server (NTRS)

King, R. E.; Condon, G. W.

1972-01-01

A method for a computer-aided design of a class of optimum filters, having specifications in the frequency domain of both magnitude and phase, is described. The method, an extension to the work of Steiglitz, uses the Fletcher-Powell algorithm to minimize a weighted squared magnitude and phase criterion. Results using the algorithm for the design of filters having specified phase as well as specified magnitude and phase compromise are presented.

SU-G-BRC-10: Feasibility of a Web-Based Monte Carlo Simulation Tool for Dynamic Electron Arc Radiotherapy (DEAR)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rodrigues, A; Wu, Q; Sawkey, D

Purpose: DEAR is a radiation therapy technique utilizing synchronized motion of gantry and couch during delivery to optimize dose distribution homogeneity and penumbra for treatment of superficial disease. Dose calculation for DEAR is not yet supported by commercial TPSs. The purpose of this study is to demonstrate the feasibility of using a web-based Monte Carlo (MC) simulation tool (VirtuaLinac) to calculate dose distributions for a DEAR delivery. Methods: MC simulations were run through VirtuaLinac, which is based on the GEANT4 platform. VirtuaLinac utilizes detailed linac head geometry and material models, validated phase space files, and a voxelized phantom. The inputmore » was expanded to include an XML file for simulation of varying mechanical axes as a function of MU. A DEAR XML plan was generated and used in the MC simulation and delivered on a TrueBeam in Developer Mode. Radiographic film wrapped on a cylindrical phantom (12.5 cm radius) measured dose at a depth of 1.5 cm and compared to the simulation results. Results: A DEAR plan was simulated using an energy of 6 MeV and a 3×10 cm{sup 2} cut-out in a 15×15 cm{sup 2} applicator for a delivery of a 90° arc. The resulting data were found to provide qualitative and quantitative evidence that the simulation platform could be used as the basis for DEAR dose calculations. The resulting unwrapped 2D dose distributions agreed well in the cross-plane direction along the arc, with field sizes of 18.4 and 18.2 cm and penumbrae of 1.9 and 2.0 cm for measurements and simulations, respectively. Conclusion: Preliminary feasibility of a DEAR delivery using a web-based MC simulation platform has been demonstrated. This tool will benefit treatment planning for DEAR as a benchmark for developing other model based algorithms, allowing efficient optimization of trajectories, and quality assurance of plans without the need for extensive measurements.« less

Landslide movement mapping by sub-pixel amplitude offset tracking - case study from Corvara landslide

NASA Astrophysics Data System (ADS)

Darvishi, Mehdi; Schlögel, Romy; Cuozzo, Giovanni; Callegari, Mattia; Thiebes, Benni; Bruzzone, Lorenzo; Mulas, Marco; Corsini, Alessandro; Mair, Volkmar

2016-04-01

Despite the advantages of Differential Synthetic Aperture Radar Interferometry (DInSAR) methods for quantifying landslide deformation over large areas, some limitations remain. These include for example geometric distortions, atmospheric artefacts, geometric and temporal decorrelations, data and scale constraints, and the restriction that only 1-dimentional line-of-sight (LOS) deformations can be measured. At local scale, the major limitations are dense vegetation, as well as large displacement rates which can lead to decorrelation between SAR acquisitions also for high resolution images and temporal baselines. Sub-pixel offset tracking was proposed to overcome some of these limitations. Two of the most important advantages of this technique are the mapping of 2-D displacements (azimuth and range directions), and the fact that there is no need for complex phase unwrapping algorithms which could give wrong results or fail in case of decorrelation or fast ground deformations. As sub-pixel offset tracking is highly sensitive to the spatial resolution of the data, latest generations of SAR sensors such as TerraSAR-X and COSMO-SkyMed providing high resolution data (up to 1m) have great potential to become established methods in the field of ground deformation monitoring. In this study, sub-pixel offset tracking was applied to COSMO SkyMed X-band imagery in order to quantify ground displacements and to evaluate the feasibility of offset tracking for landslide movement mapping and monitoring. The study area is the active Corvara landslide located in the Italian Alps, described as a slow-moving and deep-seated landslide with annual displacement rates of up to 20 m. Corner reflectors specifically designed for X-band were installed on the landslide and used as reference points for sub-pixel offset tracking. Satellite images covering the period from 2013 to 2015 were analyzed with an amplitude tracking tool for calculating the offsets and extracting 2-D displacements. Sub-pixel offset tracking outputs were integrated with DInSAR results and correlated to differential GPS measurements recorded at the same time as the SAR data acquisitions.

Experimental testing of four correction algorithms for the forward scattering spectrometer probe

NASA Technical Reports Server (NTRS)

Hovenac, Edward A.; Oldenburg, John R.; Lock, James A.

1992-01-01

Three number density correction algorithms and one size distribution correction algorithm for the Forward Scattering Spectrometer Probe (FSSP) were compared with data taken by the Phase Doppler Particle Analyzer (PDPA) and an optical number density measuring instrument (NDMI). Of the three number density correction algorithms, the one that compared best to the PDPA and NDMI data was the algorithm developed by Baumgardner, Strapp, and Dye (1985). The algorithm that corrects sizing errors in the FSSP that was developed by Lock and Hovenac (1989) was shown to be within 25 percent of the Phase Doppler measurements at number densities as high as 3000/cc.

Stationary-phase optimized selectivity liquid chromatography: development of a linear gradient prediction algorithm.

PubMed

De Beer, Maarten; Lynen, Fréderic; Chen, Kai; Ferguson, Paul; Hanna-Brown, Melissa; Sandra, Pat

2010-03-01

Stationary-phase optimized selectivity liquid chromatography (SOS-LC) is a tool in reversed-phase LC (RP-LC) to optimize the selectivity for a given separation by combining stationary phases in a multisegment column. The presently (commercially) available SOS-LC optimization procedure and algorithm are only applicable to isocratic analyses. Step gradient SOS-LC has been developed, but this is still not very elegant for the analysis of complex mixtures composed of components covering a broad hydrophobicity range. A linear gradient prediction algorithm has been developed allowing one to apply SOS-LC as a generic RP-LC optimization method. The algorithm allows operation in isocratic, stepwise, and linear gradient run modes. The features of SOS-LC in the linear gradient mode are demonstrated by means of a mixture of 13 steroids, whereby baseline separation is predicted and experimentally demonstrated.

Explicit Filtering Based Low-Dose Differential Phase Reconstruction Algorithm with the Grating Interferometry.

PubMed

Jiang, Xiaolei; Zhang, Li; Zhang, Ran; Yin, Hongxia; Wang, Zhenchang

2015-01-01

X-ray grating interferometry offers a novel framework for the study of weakly absorbing samples. Three kinds of information, that is, the attenuation, differential phase contrast (DPC), and dark-field images, can be obtained after a single scanning, providing additional and complementary information to the conventional attenuation image. Phase shifts of X-rays are measured by the DPC method; hence, DPC-CT reconstructs refraction indexes rather than attenuation coefficients. In this work, we propose an explicit filtering based low-dose differential phase reconstruction algorithm, which enables reconstruction from reduced scanning without artifacts. The algorithm adopts a differential algebraic reconstruction technique (DART) with the explicit filtering based sparse regularization rather than the commonly used total variation (TV) method. Both the numerical simulation and the biological sample experiment demonstrate the feasibility of the proposed algorithm.

Explicit Filtering Based Low-Dose Differential Phase Reconstruction Algorithm with the Grating Interferometry

PubMed Central

Zhang, Li; Zhang, Ran; Yin, Hongxia; Wang, Zhenchang

2015-01-01

X-ray grating interferometry offers a novel framework for the study of weakly absorbing samples. Three kinds of information, that is, the attenuation, differential phase contrast (DPC), and dark-field images, can be obtained after a single scanning, providing additional and complementary information to the conventional attenuation image. Phase shifts of X-rays are measured by the DPC method; hence, DPC-CT reconstructs refraction indexes rather than attenuation coefficients. In this work, we propose an explicit filtering based low-dose differential phase reconstruction algorithm, which enables reconstruction from reduced scanning without artifacts. The algorithm adopts a differential algebraic reconstruction technique (DART) with the explicit filtering based sparse regularization rather than the commonly used total variation (TV) method. Both the numerical simulation and the biological sample experiment demonstrate the feasibility of the proposed algorithm. PMID:26089971

A fast two-plus-one phase-shifting algorithm for high-speed three-dimensional shape measurement system

NASA Astrophysics Data System (ADS)

Wang, Wenyun; Guo, Yingfu

2008-12-01

Phase-shifting methods for 3-D shape measurement have long been employed in optical metrology for their speed and accuracy. For real-time, accurate, 3-D shape measurement, a four-step phase-shifting algorithm which has the advantage of its symmetry is a good choice; however, its measurement error is sensitive to any fringe image errors caused by various sources such as motion blur. To alleviate this problem, a fast two-plus-one phase-shifting algorithm is proposed in this paper. This kind of technology will benefit many applications such as medical imaging, gaming, animation, computer vision, computer graphics, etc.

X-Ray Phase Imaging for Breast Cancer Detection

DTIC Science & Technology

2012-09-01

the Gerchberg-Saxton algorithm in the Fresnel diffraction regime, and is much more robust against image noise than the TIE-based method. For details...developed efficient coding with the software modules for the image registration, flat-filed correction , and phase retrievals. In addition, we...X, Liu H. 2010. Performance analysis of the attenuation-partition based iterative phase retrieval algorithm for in-line phase-contrast imaging

Experimental Bayesian Quantum Phase Estimation on a Silicon Photonic Chip.

PubMed

Paesani, S; Gentile, A A; Santagati, R; Wang, J; Wiebe, N; Tew, D P; O'Brien, J L; Thompson, M G

2017-03-10

Quantum phase estimation is a fundamental subroutine in many quantum algorithms, including Shor's factorization algorithm and quantum simulation. However, so far results have cast doubt on its practicability for near-term, nonfault tolerant, quantum devices. Here we report experimental results demonstrating that this intuition need not be true. We implement a recently proposed adaptive Bayesian approach to quantum phase estimation and use it to simulate molecular energies on a silicon quantum photonic device. The approach is verified to be well suited for prethreshold quantum processors by investigating its superior robustness to noise and decoherence compared to the iterative phase estimation algorithm. This shows a promising route to unlock the power of quantum phase estimation much sooner than previously believed.

Adaptive phase k-means algorithm for waveform classification

NASA Astrophysics Data System (ADS)

Song, Chengyun; Liu, Zhining; Wang, Yaojun; Xu, Feng; Li, Xingming; Hu, Guangmin

2018-01-01

Waveform classification is a powerful technique for seismic facies analysis that describes the heterogeneity and compartments within a reservoir. Horizon interpretation is a critical step in waveform classification. However, the horizon often produces inconsistent waveform phase, and thus results in an unsatisfied classification. To alleviate this problem, an adaptive phase waveform classification method called the adaptive phase k-means is introduced in this paper. Our method improves the traditional k-means algorithm using an adaptive phase distance for waveform similarity measure. The proposed distance is a measure with variable phases as it moves from sample to sample along the traces. Model traces are also updated with the best phase interference in the iterative process. Therefore, our method is robust to phase variations caused by the interpretation horizon. We tested the effectiveness of our algorithm by applying it to synthetic and real data. The satisfactory results reveal that the proposed method tolerates certain waveform phase variation and is a good tool for seismic facies analysis.

Self-calibrated multiple-echo acquisition with radial trajectories using the conjugate gradient method (SMART-CG).

PubMed

Jung, Youngkyoo; Samsonov, Alexey A; Bydder, Mark; Block, Walter F

2011-04-01

To remove phase inconsistencies between multiple echoes, an algorithm using a radial acquisition to provide inherent phase and magnitude information for self correction was developed. The information also allows simultaneous support for parallel imaging for multiple coil acquisitions. Without a separate field map acquisition, a phase estimate from each echo in multiple echo train was generated. When using a multiple channel coil, magnitude and phase estimates from each echo provide in vivo coil sensitivities. An algorithm based on the conjugate gradient method uses these estimates to simultaneously remove phase inconsistencies between echoes, and in the case of multiple coil acquisition, simultaneously provides parallel imaging benefits. The algorithm is demonstrated on single channel, multiple channel, and undersampled data. Substantial image quality improvements were demonstrated. Signal dropouts were completely removed and undersampling artifacts were well suppressed. The suggested algorithm is able to remove phase cancellation and undersampling artifacts simultaneously and to improve image quality of multiecho radial imaging, the important technique for fast three-dimensional MRI data acquisition. Copyright © 2011 Wiley-Liss, Inc.

Self-calibrated Multiple-echo Acquisition with Radial Trajectories using the Conjugate Gradient Method (SMART-CG)

PubMed Central

Jung, Youngkyoo; Samsonov, Alexey A; Bydder, Mark; Block, Walter F.

2011-01-01

Purpose To remove phase inconsistencies between multiple echoes, an algorithm using a radial acquisition to provide inherent phase and magnitude information for self correction was developed. The information also allows simultaneous support for parallel imaging for multiple coil acquisitions. Materials and Methods Without a separate field map acquisition, a phase estimate from each echo in multiple echo train was generated. When using a multiple channel coil, magnitude and phase estimates from each echo provide in-vivo coil sensitivities. An algorithm based on the conjugate gradient method uses these estimates to simultaneously remove phase inconsistencies between echoes, and in the case of multiple coil acquisition, simultaneously provides parallel imaging benefits. The algorithm is demonstrated on single channel, multiple channel, and undersampled data. Results Substantial image quality improvements were demonstrated. Signal dropouts were completely removed and undersampling artifacts were well suppressed. Conclusion The suggested algorithm is able to remove phase cancellation and undersampling artifacts simultaneously and to improve image quality of multiecho radial imaging, the important technique for fast 3D MRI data acquisition. PMID:21448967

Determination of wavefront structure for a Hartmann wavefront sensor using a phase-retrieval method.

PubMed

Polo, A; Kutchoukov, V; Bociort, F; Pereira, S F; Urbach, H P

2012-03-26

We apply a phase retrieval algorithm to the intensity pattern of a Hartmann wavefront sensor to measure with enhanced accuracy the phase structure of a Hartmann hole array. It is shown that the rms wavefront error achieved by phase reconstruction is one order of magnitude smaller than the one obtained from a typical centroid algorithm. Experimental results are consistent with a phase measurement performed independently using a Shack-Hartmann wavefront sensor.

Shear Wave Structure of Umbria and Marche, Italy, Strong Motion Seismometer Sites Affected by the 1997-98 Umbria-Marche, Italy, Earthquake Sequence

USGS Publications Warehouse

Kayen, Robert; Scasserra, Giuseppe; Stewart, Jonathan P.; Lanzo, Giuseppe

2008-01-01

A long sequence of earthquakes, eight with magnitudes between 5 and 6, struck the Umbria and Marche regions of central Italy between September 26, 1997 and July 1998. The earthquake swarm caused severe structural damage, particularly to masonry buildings, and resulted in the loss of twelve lives and about 150 injuries. The source of the events was a single seismogenic structure that consists of several faults with a prevailing northwest-southeast strike and crosses the Umbria-Marche border. The focal mechanism of the largest shocks indicates that the events were the product of shallow extensional normal faulting along a NE-SW extension perpendicular to the trend of the Apennines. The network of analog seismometer stations in the Umbria and Marche regions recorded motions of the main September and October 1997 events and a dense array of mobile digital stations, installed since September 29, recorded most of the swarm. The permanent national network Rete Accelerometrica Nazionale (RAN) is administered and maintained by Dipartimento delle Protezione Civile (DPC: Civil Protection Department); the temporary array was managed by Servizio Sismico Nazionale (SSN) in cooperation with small agencies and Universities. ENEA, the operator of many seismometer stations in Umbria, is the public Italian National Agency for New Technologies, Energy and the Environment. Many of the temporary and permanent stations in the Italian seismic network have little or no characterization of seismic velocities. In this study, we investigated 17 Italian sites using an active-source approach that employs low frequency harmonic waves to measure the dispersive nature of surface waves in the ground. We used the Spectral Analysis of Surface Wave (SASW) approach, coupled with an array of harmonic-wave electro-mechanical sources that are driven in-phase to excite the ground. An inversion algorithm using a non-linear least-squares best-fit method is used to compute shear wave velocities for up to 100 meters of the soil column. A draft report was published in the summer of 2008, followed by a comment period, lengthy discussions with Italian colleagues, and improved knowledge of the subsurface at the sites from soil logs. Four of the sites were reprocessed in order to correct issues with phase unwrapping of the field dispersion curves that complicated the velocity profile calculations at the lowest velocity sites. This report presents the final results from the reprocessing effort.

Modis Collection 6 Shortwave-Derived Cloud Phase Classification Algorithm and Comparisons with CALIOP

NASA Technical Reports Server (NTRS)

Marchant, Benjamin; Platnick, Steven; Meyer, Kerry; Arnold, George Thomas; Riedi, Jerome

2016-01-01

Cloud thermodynamic phase (e.g., ice, liquid) classification is an important first step for cloud retrievals from passive sensors such as MODIS (Moderate-Resolution Imaging Spectroradiometer). Because ice and liquid phase clouds have very different scattering and absorbing properties, an incorrect cloud phase decision can lead to substantial errors in the cloud optical and microphysical property products such as cloud optical thickness or effective particle radius. Furthermore, it is well established that ice and liquid clouds have different impacts on the Earth's energy budget and hydrological cycle, thus accurately monitoring the spatial and temporal distribution of these clouds is of continued importance. For MODIS Collection 6 (C6), the shortwave-derived cloud thermodynamic phase algorithm used by the optical and microphysical property retrievals has been completely rewritten to improve the phase discrimination skill for a variety of cloudy scenes (e.g., thin/thick clouds, over ocean/land/desert/snow/ice surface, etc). To evaluate the performance of the C6 cloud phase algorithm, extensive granule-level and global comparisons have been conducted against the heritage C5 algorithm and CALIOP. A wholesale improvement is seen for C6 compared to C5.

Phase Reconstruction from FROG Using Genetic Algorithms[Frequency-Resolved Optical Gating

DOE Office of Scientific and Technical Information (OSTI.GOV)

Omenetto, F.G.; Nicholson, J.W.; Funk, D.J.

1999-04-12

The authors describe a new technique for obtaining the phase and electric field from FROG measurements using genetic algorithms. Frequency-Resolved Optical Gating (FROG) has gained prominence as a technique for characterizing ultrashort pulses. FROG consists of a spectrally resolved autocorrelation of the pulse to be measured. Typically a combination of iterative algorithms is used, applying constraints from experimental data, and alternating between the time and frequency domain, in order to retrieve an optical pulse. The authors have developed a new approach to retrieving the intensity and phase from FROG data using a genetic algorithm (GA). A GA is a generalmore » parallel search technique that operates on a population of potential solutions simultaneously. Operators in a genetic algorithm, such as crossover, selection, and mutation are based on ideas taken from evolution.« less

Analysis of a new phase and height algorithm in phase measurement profilometry

NASA Astrophysics Data System (ADS)

Bian, Xintian; Zuo, Fen; Cheng, Ju

2018-04-01

Traditional phase measurement profilometry adopts divergent illumination to obtain the height distribution of a measured object accurately. However, the mapping relation between reference plane coordinates and phase distribution must be calculated before measurement. Data are then stored in a computer in the form of a data sheet for standby applications. This study improved the distribution of projected fringes and deducted the phase-height mapping algorithm when the two pupils of the projection and imaging systems are of unequal heights and when the projection and imaging axes are on different planes. With the algorithm, calculating the mapping relation between reference plane coordinates and phase distribution prior to measurement is unnecessary. Thus, the measurement process is simplified, and the construction of an experimental system is made easy. Computer simulation and experimental results confirm the effectiveness of the method.

Quantitative phase retrieval with arbitrary pupil and illumination

DOE PAGES

Claus, Rene A.; Naulleau, Patrick P.; Neureuther, Andrew R.; ...

2015-10-02

We present a general algorithm for combining measurements taken under various illumination and imaging conditions to quantitatively extract the amplitude and phase of an object wave. The algorithm uses the weak object transfer function, which incorporates arbitrary pupil functions and partially coherent illumination. The approach is extended beyond the weak object regime using an iterative algorithm. Finally, we demonstrate the method on measurements of Extreme Ultraviolet Lithography (EUV) multilayer mask defects taken in an EUV zone plate microscope with both a standard zone plate lens and a zone plate implementing Zernike phase contrast.

First-Order Phase Transition in the Quantum Adiabatic Algorithm

DTIC Science & Technology

2010-01-14

London) 400, 133 (1999). [19] T. Jörg, F. Krzakala, G . Semerjian, and F. Zamponi, arXiv:0911.3438. PRL 104, 020502 (2010) P HY S I CA L R EV I EW LE T T E R S week ending 15 JANUARY 2010 020502-4 ...Box 12211 Research Triangle Park, NC 27709-2211 15. SUBJECT TERMS Quantum Adiabatic Algorithm, Monte Carlo, Quantum Phase Transition A. P . Young, V...documentation. Approved for public release; distribution is unlimited. ... 56290.2-PH-QC First-Order Phase Transition in the Quantum Adiabatic Algorithm A. P

Common-mask guided image reconstruction (c-MGIR) for enhanced 4D cone-beam computed tomography

NASA Astrophysics Data System (ADS)

Park, Justin C.; Zhang, Hao; Chen, Yunmei; Fan, Qiyong; Li, Jonathan G.; Liu, Chihray; Lu, Bo

2015-12-01

Compared to 3D cone beam computed tomography (3D CBCT), the image quality of commercially available four-dimensional (4D) CBCT is severely impaired due to the insufficient amount of projection data available for each phase. Since the traditional Feldkamp-Davis-Kress (FDK)-based algorithm is infeasible for reconstructing high quality 4D CBCT images with limited projections, investigators had developed several compress-sensing (CS) based algorithms to improve image quality. The aim of this study is to develop a novel algorithm which can provide better image quality than the FDK and other CS based algorithms with limited projections. We named this algorithm ‘the common mask guided image reconstruction’ (c-MGIR). In c-MGIR, the unknown CBCT volume is mathematically modeled as a combination of phase-specific motion vectors and phase-independent static vectors. The common-mask matrix, which is the key concept behind the c-MGIR algorithm, separates the common static part across all phase images from the possible moving part in each phase image. The moving part and the static part of the volumes were then alternatively updated by solving two sub-minimization problems iteratively. As the novel mathematical transformation allows the static volume and moving volumes to be updated (during each iteration) with global projections and ‘well’ solved static volume respectively, the algorithm was able to reduce the noise and under-sampling artifact (an issue faced by other algorithms) to the maximum extent. To evaluate the performance of our proposed c-MGIR, we utilized imaging data from both numerical phantoms and a lung cancer patient. The qualities of the images reconstructed with c-MGIR were compared with (1) standard FDK algorithm, (2) conventional total variation (CTV) based algorithm, (3) prior image constrained compressed sensing (PICCS) algorithm, and (4) motion-map constrained image reconstruction (MCIR) algorithm, respectively. To improve the efficiency of the algorithm, the code was implemented with a graphic processing unit for parallel processing purposes. Root mean square error (RMSE) between the ground truth and reconstructed volumes of the numerical phantom were in the descending order of FDK, CTV, PICCS, MCIR, and c-MGIR for all phases. Specifically, the means and the standard deviations of the RMSE of FDK, CTV, PICCS, MCIR and c-MGIR for all phases were 42.64  ±  6.5%, 3.63  ±  0.83%, 1.31%  ±  0.09%, 0.86%  ±  0.11% and 0.52 %  ±  0.02%, respectively. The image quality of the patient case also indicated the superiority of c-MGIR compared to other algorithms. The results indicated that clinically viable 4D CBCT images can be reconstructed while requiring no more projection data than a typical clinical 3D CBCT scan. This makes c-MGIR a potential online reconstruction algorithm for 4D CBCT, which can provide much better image quality than other available algorithms, while requiring less dose and potentially less scanning time.

Common-mask guided image reconstruction (c-MGIR) for enhanced 4D cone-beam computed tomography.

PubMed

Park, Justin C; Zhang, Hao; Chen, Yunmei; Fan, Qiyong; Li, Jonathan G; Liu, Chihray; Lu, Bo

2015-12-07

Compared to 3D cone beam computed tomography (3D CBCT), the image quality of commercially available four-dimensional (4D) CBCT is severely impaired due to the insufficient amount of projection data available for each phase. Since the traditional Feldkamp-Davis-Kress (FDK)-based algorithm is infeasible for reconstructing high quality 4D CBCT images with limited projections, investigators had developed several compress-sensing (CS) based algorithms to improve image quality. The aim of this study is to develop a novel algorithm which can provide better image quality than the FDK and other CS based algorithms with limited projections. We named this algorithm 'the common mask guided image reconstruction' (c-MGIR).In c-MGIR, the unknown CBCT volume is mathematically modeled as a combination of phase-specific motion vectors and phase-independent static vectors. The common-mask matrix, which is the key concept behind the c-MGIR algorithm, separates the common static part across all phase images from the possible moving part in each phase image. The moving part and the static part of the volumes were then alternatively updated by solving two sub-minimization problems iteratively. As the novel mathematical transformation allows the static volume and moving volumes to be updated (during each iteration) with global projections and 'well' solved static volume respectively, the algorithm was able to reduce the noise and under-sampling artifact (an issue faced by other algorithms) to the maximum extent. To evaluate the performance of our proposed c-MGIR, we utilized imaging data from both numerical phantoms and a lung cancer patient. The qualities of the images reconstructed with c-MGIR were compared with (1) standard FDK algorithm, (2) conventional total variation (CTV) based algorithm, (3) prior image constrained compressed sensing (PICCS) algorithm, and (4) motion-map constrained image reconstruction (MCIR) algorithm, respectively. To improve the efficiency of the algorithm, the code was implemented with a graphic processing unit for parallel processing purposes.Root mean square error (RMSE) between the ground truth and reconstructed volumes of the numerical phantom were in the descending order of FDK, CTV, PICCS, MCIR, and c-MGIR for all phases. Specifically, the means and the standard deviations of the RMSE of FDK, CTV, PICCS, MCIR and c-MGIR for all phases were 42.64  ±  6.5%, 3.63  ±  0.83%, 1.31%  ±  0.09%, 0.86%  ±  0.11% and 0.52 %  ±  0.02%, respectively. The image quality of the patient case also indicated the superiority of c-MGIR compared to other algorithms.The results indicated that clinically viable 4D CBCT images can be reconstructed while requiring no more projection data than a typical clinical 3D CBCT scan. This makes c-MGIR a potential online reconstruction algorithm for 4D CBCT, which can provide much better image quality than other available algorithms, while requiring less dose and potentially less scanning time.

Lensometry by two-laser holography with photorefractive Bi12TiO20

NASA Astrophysics Data System (ADS)

Barbosa, Eduardo A.; Preto, André O.

2008-04-01

Refractive and profilometric measurements of lenses were performed through holography with a photorefractive Bi12TiO20 crystal as the recording medium. Two properly aligned diode lasers emitting in the red region were employed as light sources. Both lasers were tuned in order to provide millimetric and sub-millimetric synthetic wavelengths. The surfaces of the test lens were covered by a 25-μm opaque plastic tape in order to allow the lens profilometry upon illuminating them with a collimated beam. The resulting holographic images appear covered by interference fringes corresponding to the wavefront geometry of the wave scattered by the lens. For refractive index measurement a diffusely scattering flat surface was positioned behind the uncovered lens which was also illuminated by a plane wave. The resulting contour interferogram describes the form of the wavefront after the beam traveled back and forth through the lens. The fringe quantitative evaluation was carried out through the four-stepping technique and the resulting phase map and the Branch-cut method was employed for phase unwrapping. The only non-optical procedure for lens characterization was the thickness measurement, made by a dial caliper. Exact ray tracing calculation was performed in order to establish a relation between the output wavefront geometry and the lens parameters like radii of curvature, thickness and refractive index. By quantitatively comparing the theoretical wavefront geometry with the experimental results relative uncertainties bellow 3% for refractive index and 1 % for focal length were obtained.

The challenging retrieval of the displacement field from InSAR data for andesitic stratovolcanoes: Case study of Popocatepetl and Colima Volcano, Mexico

NASA Astrophysics Data System (ADS)

Pinel, V.; Hooper, A.; De la Cruz-Reyna, S.; Reyes-Davila, G.; Doin, M. P.; Bascou, P.

2011-02-01

Despite the ability of synthetic aperture radar (SAR) interferometry to measure ground motion with high-resolution, application of this remote sensing technique to monitor andesitic stratovolcanoes remains limited. Specific acquisition conditions characterizing andesitic stratovolcanoes, mainly vegetated areas with large elevation ranges, induce low signal coherence as well as strong tropospheric artefacts that result in small signal-to-noise ratio. We propose here a way to mitigate these difficulties and improve the SAR measurements. We derive ground motions for two of the most active Mexican stratovolcanoes: Popocatepetl and Colima Volcano, from the time series of SAR data acquired from December 2002 to August 2006. The SAR data are processed using a method that combines both persistent scatterers and small baseline approaches. Stratified tropospheric delays are estimated for each interferogram using inputs from the global atmospheric model NARR, up to a maximum of 10 rad/km. These delays are validated using spectrometer data, as well as the correlation between the wrapped phase and the elevation. The tropospheric effect is removed from the wrapped phase in order to improve the unwrapping process. On Popocatepetl, we observe no significant deformation. The Colima summit area exhibits a constant subsidence rate of more than 1 cm/year centered on the summit but enhanced (reaching more than 2 cm/year) around the 1998 lava flow. We model this subsidence considering both a deflating magma source at depth and the effect of the eruptive deposits load.

Atmospheric corrections in interferometric synthetic aperture radar surface deformation - a case study of the city of Mendoza, Argentina

NASA Astrophysics Data System (ADS)

Balbarani, S.; Euillades, P. A.; Euillades, L. D.; Casu, F.; Riveros, N. C.

2013-09-01

Differential interferometry is a remote sensing technique that allows studying crustal deformation produced by several phenomena like earthquakes, landslides, land subsidence and volcanic eruptions. Advanced techniques, like small baseline subsets (SBAS), exploit series of images acquired by synthetic aperture radar (SAR) sensors during a given time span. Phase propagation delay in the atmosphere is the main systematic error of interferometric SAR measurements. It affects differently images acquired at different days or even at different hours of the same day. So, datasets acquired during the same time span from different sensors (or sensor configuration) often give diverging results. Here we processed two datasets acquired from June 2010 to December 2011 by COSMO-SkyMed satellites. One of them is HH-polarized, and the other one is VV-polarized and acquired on different days. As expected, time series computed from these datasets show differences. We attributed them to non-compensated atmospheric artifacts and tried to correct them by using ERA-Interim global atmospheric model (GAM) data. With this method, we were able to correct less than 50% of the scenes, considering an area where no phase unwrapping errors were detected. We conclude that GAM-based corrections are not enough for explaining differences in computed time series, at least in the processed area of interest. We remark that no direct meteorological data for the GAM-based corrections were employed. Further research is needed in order to understand under what conditions this kind of data can be used.

Cook-Levin Theorem Algorithmic-Reducibility/Completeness = Wilson Renormalization-(Semi)-Group Fixed-Points; ``Noise''-Induced Phase-Transitions (NITs) to Accelerate Algorithmics (``NIT-Picking'') REPLACING CRUTCHES!!!: Models: Turing-machine, finite-state-models, finite-automata

NASA Astrophysics Data System (ADS)

Young, Frederic; Siegel, Edward

Cook-Levin theorem theorem algorithmic computational-complexity(C-C) algorithmic-equivalence reducibility/completeness equivalence to renormalization-(semi)-group phase-transitions critical-phenomena statistical-physics universality-classes fixed-points, is exploited via Siegel FUZZYICS =CATEGORYICS = ANALOGYICS =PRAGMATYICS/CATEGORY-SEMANTICS ONTOLOGY COGNITION ANALYTICS-Aristotle ``square-of-opposition'' tabular list-format truth-table matrix analytics predicts and implements ''noise''-induced phase-transitions (NITs) to accelerate versus to decelerate Harel [Algorithmics (1987)]-Sipser[Intro.Thy. Computation(`97)] algorithmic C-C: ''NIT-picking''(!!!), to optimize optimization-problems optimally(OOPO). Versus iso-''noise'' power-spectrum quantitative-only amplitude/magnitude-only variation stochastic-resonance, ''NIT-picking'' is ''noise'' power-spectrum QUALitative-type variation via quantitative critical-exponents variation. Computer-''science''/SEANCE algorithmic C-C models: Turing-machine, finite-state-models, finite-automata,..., discrete-maths graph-theory equivalence to physics Feynman-diagrams are identified as early-days once-workable valid but limiting IMPEDING CRUTCHES(!!!), ONLY IMPEDE latter-days new-insights!!!

A Smartphone Indoor Localization Algorithm Based on WLAN Location Fingerprinting with Feature Extraction and Clustering.

PubMed

Luo, Junhai; Fu, Liang

2017-06-09

With the development of communication technology, the demand for location-based services is growing rapidly. This paper presents an algorithm for indoor localization based on Received Signal Strength (RSS), which is collected from Access Points (APs). The proposed localization algorithm contains the offline information acquisition phase and online positioning phase. Firstly, the AP selection algorithm is reviewed and improved based on the stability of signals to remove useless AP; secondly, Kernel Principal Component Analysis (KPCA) is analyzed and used to remove the data redundancy and maintain useful characteristics for nonlinear feature extraction; thirdly, the Affinity Propagation Clustering (APC) algorithm utilizes RSS values to classify data samples and narrow the positioning range. In the online positioning phase, the classified data will be matched with the testing data to determine the position area, and the Maximum Likelihood (ML) estimate will be employed for precise positioning. Eventually, the proposed algorithm is implemented in a real-world environment for performance evaluation. Experimental results demonstrate that the proposed algorithm improves the accuracy and computational complexity.

Differential carrier phase recovery for QPSK optical coherent systems with integrated tunable lasers.

PubMed

Fatadin, Irshaad; Ives, David; Savory, Seb J

2013-04-22

The performance of a differential carrier phase recovery algorithm is investigated for the quadrature phase shift keying (QPSK) modulation format with an integrated tunable laser. The phase noise of the widely-tunable laser measured using a digital coherent receiver is shown to exhibit significant drift compared to a standard distributed feedback (DFB) laser due to enhanced low frequency noise component. The simulated performance of the differential algorithm is compared to the Viterbi-Viterbi phase estimation at different baud rates using the measured phase noise for the integrated tunable laser.

Phaser crystallographic software.

PubMed

McCoy, Airlie J; Grosse-Kunstleve, Ralf W; Adams, Paul D; Winn, Martyn D; Storoni, Laurent C; Read, Randy J

2007-08-01

Phaser is a program for phasing macromolecular crystal structures by both molecular replacement and experimental phasing methods. The novel phasing algorithms implemented in Phaser have been developed using maximum likelihood and multivariate statistics. For molecular replacement, the new algorithms have proved to be significantly better than traditional methods in discriminating correct solutions from noise, and for single-wavelength anomalous dispersion experimental phasing, the new algorithms, which account for correlations between F(+) and F(-), give better phases (lower mean phase error with respect to the phases given by the refined structure) than those that use mean F and anomalous differences DeltaF. One of the design concepts of Phaser was that it be capable of a high degree of automation. To this end, Phaser (written in C++) can be called directly from Python, although it can also be called using traditional CCP4 keyword-style input. Phaser is a platform for future development of improved phasing methods and their release, including source code, to the crystallographic community.

An Improved Scheduling Algorithm for Data Transmission in Ultrasonic Phased Arrays with Multi-Group Ultrasonic Sensors

PubMed Central

Tang, Wenming; Liu, Guixiong; Li, Yuzhong; Tan, Daji

2017-01-01

High data transmission efficiency is a key requirement for an ultrasonic phased array with multi-group ultrasonic sensors. Here, a novel FIFOs scheduling algorithm was proposed and the data transmission efficiency with hardware technology was improved. This algorithm includes FIFOs as caches for the ultrasonic scanning data obtained from the sensors with the output data in a bandwidth-sharing way, on the basis of which an optimal length ratio of all the FIFOs is achieved, allowing the reading operations to be switched among all the FIFOs without time slot waiting. Therefore, this algorithm enhances the utilization ratio of the reading bandwidth resources so as to obtain higher efficiency than the traditional scheduling algorithms. The reliability and validity of the algorithm are substantiated after its implementation in the field programmable gate array (FPGA) technology, and the bandwidth utilization ratio and the real-time performance of the ultrasonic phased array are enhanced. PMID:29035345

Algorithmic-Reducibility = Renormalization-Group Fixed-Points; ``Noise''-Induced Phase-Transitions (NITs) to Accelerate Algorithmics (``NIT-Picking'') Replacing CRUTCHES!!!: Gauss Modular/Clock-Arithmetic Congruences = Signal X Noise PRODUCTS..

NASA Astrophysics Data System (ADS)

Siegel, J.; Siegel, Edward Carl-Ludwig

2011-03-01

Cook-Levin computational-"complexity"(C-C) algorithmic-equivalence reduction-theorem reducibility equivalence to renormalization-(semi)-group phase-transitions critical-phenomena statistical-physics universality-classes fixed-points, is exploited with Gauss modular/clock-arithmetic/model congruences = signal X noise PRODUCT reinterpretation. Siegel-Baez FUZZYICS=CATEGORYICS(SON of ``TRIZ''): Category-Semantics(C-S) tabular list-format truth-table matrix analytics predicts and implements "noise"-induced phase-transitions (NITs) to accelerate versus to decelerate Harel [Algorithmics(1987)]-Sipser[Intro. Theory Computation(1997) algorithmic C-C: "NIT-picking" to optimize optimization-problems optimally(OOPO). Versus iso-"noise" power-spectrum quantitative-only amplitude/magnitude-only variation stochastic-resonance, this "NIT-picking" is "noise" power-spectrum QUALitative-type variation via quantitative critical-exponents variation. Computer-"science" algorithmic C-C models: Turing-machine, finite-state-models/automata, are identified as early-days once-workable but NOW ONLY LIMITING CRUTCHES IMPEDING latter-days new-insights!!!

Phase retrieval via incremental truncated amplitude flow algorithm

NASA Astrophysics Data System (ADS)

Zhang, Quanbing; Wang, Zhifa; Wang, Linjie; Cheng, Shichao

2017-10-01

This paper considers the phase retrieval problem of recovering the unknown signal from the given quadratic measurements. A phase retrieval algorithm based on Incremental Truncated Amplitude Flow (ITAF) which combines the ITWF algorithm and the TAF algorithm is proposed. The proposed ITAF algorithm enhances the initialization by performing both of the truncation methods used in ITWF and TAF respectively, and improves the performance in the gradient stage by applying the incremental method proposed in ITWF to the loop stage of TAF. Moreover, the original sampling vector and measurements are preprocessed before initialization according to the variance of the sensing matrix. Simulation experiments verified the feasibility and validity of the proposed ITAF algorithm. The experimental results show that it can obtain higher success rate and faster convergence speed compared with other algorithms. Especially, for the noiseless random Gaussian signals, ITAF can recover any real-valued signal accurately from the magnitude measurements whose number is about 2.5 times of the signal length, which is close to the theoretic limit (about 2 times of the signal length). And it usually converges to the optimal solution within 20 iterations which is much less than the state-of-the-art algorithms.

Three dimensional range geometry and texture data compression with space-filling curves.

PubMed

Chen, Xia; Zhang, Song

2017-10-16

This paper presents a novel method to effectively store three-dimensional (3D) data and 2D texture data into a regular 24-bit image. The proposed method uses the Hilbert space-filling curve to map the normalized unwrapped phase map to two 8-bit color channels, and saves the third color channel for 2D texture storage. By further leveraging existing 2D image and video compression techniques, the proposed method can achieve high compression ratios while effectively preserving data quality. Since the encoding and decoding processes can be applied to most of the current 2D media platforms, this proposed compression method can make 3D data storage and transmission available for many electrical devices without requiring special hardware changes. Experiments demonstrate that if a lossless 2D image/video format is used, both original 3D geometry and 2D color texture can be accurately recovered; if lossy image/video compression is used, only black-and-white or grayscale texture can be properly recovered, but much higher compression ratios (e.g., 1543:1 against the ASCII OBJ format) are achieved with slight loss of 3D geometry quality.

Automated phase mapping with AgileFD and its application to light absorber discovery in the V–Mn–Nb oxide system

DOE PAGES

Suram, Santosh K.; Xue, Yexiang; Bai, Junwen; ...

2016-11-21

Rapid construction of phase diagrams is a central tenet of combinatorial materials science with accelerated materials discovery efforts often hampered by challenges in interpreting combinatorial X-ray diffraction data sets, which we address by developing AgileFD, an artificial intelligence algorithm that enables rapid phase mapping from a combinatorial library of X-ray diffraction patterns. AgileFD models alloying-based peak shifting through a novel expansion of convolutional nonnegative matrix factorization, which not only improves the identification of constituent phases but also maps their concentration and lattice parameter as a function of composition. By incorporating Gibbs’ phase rule into the algorithm, physically meaningful phase mapsmore » are obtained with unsupervised operation, and more refined solutions are attained by injecting expert knowledge of the system. The algorithm is demonstrated through investigation of the V–Mn–Nb oxide system where decomposition of eight oxide phases, including two with substantial alloying, provides the first phase map for this pseudoternary system. This phase map enables interpretation of high-throughput band gap data, leading to the discovery of new solar light absorbers and the alloying-based tuning of the direct-allowed band gap energy of MnV 2O 6. Lastly, the open-source family of AgileFD algorithms can be implemented into a broad range of high throughput workflows to accelerate materials discovery.« less

Automated phase mapping with AgileFD and its application to light absorber discovery in the V–Mn–Nb oxide system

DOE Office of Scientific and Technical Information (OSTI.GOV)

Suram, Santosh K.; Xue, Yexiang; Bai, Junwen

Rapid construction of phase diagrams is a central tenet of combinatorial materials science with accelerated materials discovery efforts often hampered by challenges in interpreting combinatorial X-ray diffraction data sets, which we address by developing AgileFD, an artificial intelligence algorithm that enables rapid phase mapping from a combinatorial library of X-ray diffraction patterns. AgileFD models alloying-based peak shifting through a novel expansion of convolutional nonnegative matrix factorization, which not only improves the identification of constituent phases but also maps their concentration and lattice parameter as a function of composition. By incorporating Gibbs’ phase rule into the algorithm, physically meaningful phase mapsmore » are obtained with unsupervised operation, and more refined solutions are attained by injecting expert knowledge of the system. The algorithm is demonstrated through investigation of the V–Mn–Nb oxide system where decomposition of eight oxide phases, including two with substantial alloying, provides the first phase map for this pseudoternary system. This phase map enables interpretation of high-throughput band gap data, leading to the discovery of new solar light absorbers and the alloying-based tuning of the direct-allowed band gap energy of MnV 2O 6. Lastly, the open-source family of AgileFD algorithms can be implemented into a broad range of high throughput workflows to accelerate materials discovery.« less

Human OGG1 activity in nucleosomes is facilitated by transient unwrapping of DNA and is influenced by the local histone environment.

PubMed

Bilotti, Katharina; Kennedy, Erin E; Li, Chuxuan; Delaney, Sarah

2017-11-01

If unrepaired, damage to genomic DNA can cause mutations and/or be cytotoxic. Single base lesions are repaired via the base excision repair (BER) pathway. The first step in BER is the recognition and removal of the nucleobase lesion by a glycosylase enzyme. For example, human oxoguanine glycosylase 1 (hOGG1) is responsible for removal of the prototypic oxidatively damaged nucleobase, 8-oxo-7,8-dihydroguanine (8-oxoG). To date, most studies of glycosylases have used free duplex DNA substrates. However, cellular DNA is packaged as repeating nucleosome units, with 145 base pair segments of DNA wrapped around histone protein octamers. Previous studies revealed inhibition of hOGG1 at the nucleosome dyad axis and in the absence of chromatin remodelers. In this study, we reveal that even in the absence of chromatin remodelers or external cofactors, hOGG1 can initiate BER at positions off the dyad axis and that this activity is facilitated by spontaneous and transient unwrapping of DNA from the histones. Additionally, we find that solution accessibility as determined by hydroxyl radical footprinting is not fully predictive of glycosylase activity and that histone tails can suppress hOGG1 activity. We therefore suggest that local nuances in the nucleosome environment and histone-DNA interactions can impact glycosylase activity. Copyright © 2017 Elsevier B.V. All rights reserved.

The Human Ligase IIIα-XRCC1 Protein Complex Performs DNA Nick Repair after Transient Unwrapping of Nucleosomal DNA*

PubMed Central

Rashid, Ishtiaque; Tomkinson, Alan E.; Pederson, David S.

2017-01-01

Reactive oxygen species generate potentially cytotoxic and mutagenic lesions in DNA, both between and within the nucleosomes that package DNA in chromatin. The vast majority of these lesions are subject to base excision repair (BER). Enzymes that catalyze the first three steps in BER can act at many sites in nucleosomes without the aid of chromatin-remodeling agents and without irreversibly disrupting the host nucleosome. Here we show that the same is true for a protein complex comprising DNA ligase IIIα and the scaffolding protein X-ray repair cross-complementing protein 1 (XRCC1), which completes the fourth and final step in (short-patch) BER. Using in vitro assembled nucleosomes containing discretely positioned DNA nicks, our evidence indicates that the ligase IIIα-XRCC1 complex binds to DNA nicks in nucleosomes only when they are exposed by periodic, spontaneous partial unwrapping of DNA from the histone octamer; that the scaffolding protein XRCC1 enhances the ligation; that the ligation occurs within a complex that ligase IIIα-XRCC1 forms with the host nucleosome; and that the ligase IIIα-XRCC1-nucleosome complex decays when ligation is complete, allowing the host nucleosome to return to its native configuration. Taken together, our results illustrate ways in which dynamic properties intrinsic to nucleosomes may contribute to the discovery and efficient repair of base damage in chromatin. PMID:28184006

Nucleosome stability and accessibility of its DNA to proteins.

PubMed

Prinsen, Peter; Schiessel, Helmut

2010-12-01

In this paper we present a theoretical description of the accessibility of nucleosomal DNA to proteins. We reassess the classical analysis of Polach and Widom (1995) who demonstrated that proteins (in their case restriction enzymes) gain access to buried binding sites inside a nucleosome through spontaneous unwrapping of DNA from the protein spool. We introduce a straightforward nucleosome model the predictions of which show good agreement with experimental data. By fitting the model to the data we obtain the values of two quantities: the adsorption energy to the histone octamer per length of DNA and the extra length that the DNA needs to unwrap beyond the binding site of an enzyme before the enzyme can act as effectively as on bare DNA. Our results indicate that the effective binding energy is surprisingly low which suggests that the nucleosomal parameters are tuned such that two large energies, the DNA bending energy and the pure adsorption energy, nearly cancel. This paper is based on a lecture presented at the summer school "DNA and Chromosomes 2009: Physical and Biological Applications". We follow the lecture as closely as possible which is why we spend more time than usual on issues that are already well-known in the field, and why we discuss some well-known results from a different perspective. Copyright © 2010 Elsevier Masson SAS. All rights reserved.

An Efficient Correction Algorithm for Eliminating Image Misalignment Effects on Co-Phasing Measurement Accuracy for Segmented Active Optics Systems

PubMed Central

Yue, Dan; Xu, Shuyan; Nie, Haitao; Wang, Zongyang

2016-01-01

The misalignment between recorded in-focus and out-of-focus images using the Phase Diversity (PD) algorithm leads to a dramatic decline in wavefront detection accuracy and image recovery quality for segmented active optics systems. This paper demonstrates the theoretical relationship between the image misalignment and tip-tilt terms in Zernike polynomials of the wavefront phase for the first time, and an efficient two-step alignment correction algorithm is proposed to eliminate these misalignment effects. This algorithm processes a spatial 2-D cross-correlation of the misaligned images, revising the offset to 1 or 2 pixels and narrowing the search range for alignment. Then, it eliminates the need for subpixel fine alignment to achieve adaptive correction by adding additional tip-tilt terms to the Optical Transfer Function (OTF) of the out-of-focus channel. The experimental results demonstrate the feasibility and validity of the proposed correction algorithm to improve the measurement accuracy during the co-phasing of segmented mirrors. With this alignment correction, the reconstructed wavefront is more accurate, and the recovered image is of higher quality. PMID:26934045

Image encryption using fingerprint as key based on phase retrieval algorithm and public key cryptography

NASA Astrophysics Data System (ADS)

Zhao, Tieyu; Ran, Qiwen; Yuan, Lin; Chi, Yingying; Ma, Jing

2015-09-01

In this paper, a novel image encryption system with fingerprint used as a secret key is proposed based on the phase retrieval algorithm and RSA public key algorithm. In the system, the encryption keys include the fingerprint and the public key of RSA algorithm, while the decryption keys are the fingerprint and the private key of RSA algorithm. If the users share the fingerprint, then the system will meet the basic agreement of asymmetric cryptography. The system is also applicable for the information authentication. The fingerprint as secret key is used in both the encryption and decryption processes so that the receiver can identify the authenticity of the ciphertext by using the fingerprint in decryption process. Finally, the simulation results show the validity of the encryption scheme and the high robustness against attacks based on the phase retrieval technique.

A total variation diminishing finite difference algorithm for sonic boom propagation models

NASA Technical Reports Server (NTRS)

Sparrow, Victor W.

1993-01-01

It is difficult to accurately model the rise phases of sonic boom waveforms with traditional finite difference algorithms because of finite difference phase dispersion. This paper introduces the concept of a total variation diminishing (TVD) finite difference method as a tool for accurately modeling the rise phases of sonic booms. A standard second order finite difference algorithm and its TVD modified counterpart are both applied to the one-way propagation of a square pulse. The TVD method clearly outperforms the non-TVD method, showing great potential as a new computational tool in the analysis of sonic boom propagation.

Fast kinematic ray tracing of first- and later-arriving global seismic phases

NASA Astrophysics Data System (ADS)

Bijwaard, Harmen; Spakman, Wim

1999-11-01

We have developed a ray tracing algorithm that traces first- and later-arriving global seismic phases precisely (traveltime errors of the order of 0.1 s), and with great computational efficiency (15 rays s- 1). To achieve this, we have extended and adapted two existing ray tracing techniques: a graph method and a perturbation method. The two resulting algorithms are able to trace (critically) refracted, (multiply) reflected, some diffracted (Pdiff), and (multiply) converted seismic phases in a 3-D spherical geometry, thus including the largest part of seismic phases that are commonly observed on seismograms. We have tested and compared the two methods in 2-D and 3-D Cartesian and spherical models, for which both algorithms have yielded precise paths and traveltimes. These tests indicate that only the perturbation method is computationally efficient enough to perform 3-D ray tracing on global data sets of several million phases. To demonstrate its potential for non-linear tomography, we have applied the ray perturbation algorithm to a data set of 7.6 million P and pP phases used by Bijwaard et al. (1998) for linearized tomography. This showed that the expected heterogeneity within the Earth's mantle leads to significant non-linear effects on traveltimes for 10 per cent of the applied phases.

A graphically oriented specification language for automatic code generation. GRASP/Ada: A Graphical Representation of Algorithms, Structure, and Processes for Ada, phase 1

NASA Technical Reports Server (NTRS)

Cross, James H., II; Morrison, Kelly I.; May, Charles H., Jr.; Waddel, Kathryn C.

1989-01-01

The first phase of a three-phase effort to develop a new graphically oriented specification language which will facilitate the reverse engineering of Ada source code into graphical representations (GRs) as well as the automatic generation of Ada source code is described. A simplified view of the three phases of Graphical Representations for Algorithms, Structure, and Processes for Ada (GRASP/Ada) with respect to three basic classes of GRs is presented. Phase 1 concentrated on the derivation of an algorithmic diagram, the control structure diagram (CSD) (CRO88a) from Ada source code or Ada PDL. Phase 2 includes the generation of architectural and system level diagrams such as structure charts and data flow diagrams and should result in a requirements specification for a graphically oriented language able to support automatic code generation. Phase 3 will concentrate on the development of a prototype to demonstrate the feasibility of this new specification language.

Highly noise-tolerant hybrid algorithm for phase retrieval from a single-shot spatial carrier fringe pattern

NASA Astrophysics Data System (ADS)

Dong, Zhichao; Cheng, Haobo

2018-01-01

A highly noise-tolerant hybrid algorithm (NTHA) is proposed in this study for phase retrieval from a single-shot spatial carrier fringe pattern (SCFP), which effectively combines the merits of spatial carrier phase shift method and two dimensional continuous wavelet transform (2D-CWT). NTHA firstly extracts three phase-shifted fringe patterns from the SCFP with one pixel malposition; then calculates phase gradients by subtracting the reference phase from the other two target phases, which are retrieved respectively from three phase-shifted fringe patterns by 2D-CWT; finally, reconstructs the phase map by a least square gradient integration method. Its typical characters include but not limited to: (1) doesn't require the spatial carrier to be constant; (2) the subtraction mitigates edge errors of 2D-CWT; (3) highly noise-tolerant, because not only 2D-CWT is noise-insensitive, but also the noise in the fringe pattern doesn't directly take part in the phase reconstruction as in previous hybrid algorithm. Its feasibility and performances are validated extensively by simulations and contrastive experiments to temporal phase shift method, Fourier transform and 2D-CWT methods.

Automatic extraction of numeric strings in unconstrained handwritten document images

NASA Astrophysics Data System (ADS)

Haji, M. Mehdi; Bui, Tien D.; Suen, Ching Y.

2011-01-01

Numeric strings such as identification numbers carry vital pieces of information in documents. In this paper, we present a novel algorithm for automatic extraction of numeric strings in unconstrained handwritten document images. The algorithm has two main phases: pruning and verification. In the pruning phase, the algorithm first performs a new segment-merge procedure on each text line, and then using a new regularity measure, it prunes all sequences of characters that are unlikely to be numeric strings. The segment-merge procedure is composed of two modules: a new explicit character segmentation algorithm which is based on analysis of skeletal graphs and a merging algorithm which is based on graph partitioning. All the candidate sequences that pass the pruning phase are sent to a recognition-based verification phase for the final decision. The recognition is based on a coarse-to-fine approach using probabilistic RBF networks. We developed our algorithm for the processing of real-world documents where letters and digits may be connected or broken in a document. The effectiveness of the proposed approach is shown by extensive experiments done on a real-world database of 607 documents which contains handwritten, machine-printed and mixed documents with different types of layouts and levels of noise.

Phase measurements of EUV mask defects

DOE PAGES

Claus, Rene A.; Wang, Yow-Gwo; Wojdyla, Antoine; ...

2015-02-22

Extreme Ultraviolet (EUV) Lithography mask defects were examined on the actinic mask imaging system, SHARP, at Lawrence Berkeley National Laboratory. Also, a quantitative phase retrieval algorithm based on the Weak Object Transfer Function was applied to the measured through-focus aerial images to examine the amplitude and phase of the defects. The accuracy of the algorithm was demonstrated by comparing the results of measurements using a phase contrast zone plate and a standard zone plate. Using partially coherent illumination to measure frequencies that would otherwise fall outside the numerical aperture (NA), it was shown that some defects are smaller than themore » conventional resolution of the microscope. We found that the programmed defects of various sizes were measured and shown to have both an amplitude and a phase component that the algorithm is able to recover.« less

An effective approach for iris recognition using phase-based image matching.

PubMed

Miyazawa, Kazuyuki; Ito, Koichi; Aoki, Takafumi; Kobayashi, Koji; Nakajima, Hiroshi

2008-10-01

This paper presents an efficient algorithm for iris recognition using phase-based image matching--an image matching technique using phase components in 2D Discrete Fourier Transforms (DFTs) of given images. Experimental evaluation using CASIA iris image databases (versions 1.0 and 2.0) and Iris Challenge Evaluation (ICE) 2005 database clearly demonstrates that the use of phase components of iris images makes possible to achieve highly accurate iris recognition with a simple matching algorithm. This paper also discusses major implementation issues of our algorithm. In order to reduce the size of iris data and to prevent the visibility of iris images, we introduce the idea of 2D Fourier Phase Code (FPC) for representing iris information. The 2D FPC is particularly useful for implementing compact iris recognition devices using state-of-the-art Digital Signal Processing (DSP) technology.

Susceptibility-weighted imaging using inter-echo-variance channel combination for improved contrast at 7 tesla.

PubMed

Hosseini, Zahra; Liu, Junmin; Solovey, Igor; Menon, Ravi S; Drangova, Maria

2017-04-01

To implement and optimize a new approach for susceptibility-weighted image (SWI) generation from multi-echo multi-channel image data and compare its performance against optimized traditional SWI pipelines. Five healthy volunteers were imaged at 7 Tesla. The inter-echo-variance (IEV) channel combination, which uses the variance of the local frequency shift at multiple echo times as a weighting factor during channel combination, was used to calculate multi-echo local phase shift maps. Linear phase masks were combined with the magnitude to generate IEV-SWI. The performance of the IEV-SWI pipeline was compared with that of two accepted SWI pipelines-channel combination followed by (i) Homodyne filtering (HPH-SWI) and (ii) unwrapping and high-pass filtering (SVD-SWI). The filtering steps of each pipeline were optimized. Contrast-to-noise ratio was used as the comparison metric. Qualitative assessment of artifact and vessel conspicuity was performed and processing time of pipelines was evaluated. The optimized IEV-SWI pipeline (σ = 7 mm) resulted in continuous vessel visibility throughout the brain. IEV-SWI had significantly higher contrast compared with HPH-SWI and SVD-SWI (P < 0.001, Friedman nonparametric test). Residual background fields and phase wraps in HPH-SWI and SVD-SWI corrupted the vessel signal and/or generated vessel-mimicking artifact. Optimized implementation of the IEV-SWI pipeline processed a six-echo 16-channel dataset in under 10 min. IEV-SWI benefits from channel-by-channel processing of phase data and results in high contrast images with an optimal balance between contrast and background noise removal, thereby presenting evidence of importance of the order in which postprocessing techniques are applied for multi-channel SWI generation. 2 J. Magn. Reson. Imaging 2017;45:1113-1124. © 2016 International Society for Magnetic Resonance in Medicine.

Optimum projection pattern generation for grey-level coded structured light illumination systems

NASA Astrophysics Data System (ADS)

Porras-Aguilar, Rosario; Falaggis, Konstantinos; Ramos-Garcia, Ruben

2017-04-01

Structured light illumination (SLI) systems are well-established optical inspection techniques for noncontact 3D surface measurements. A common technique is multi-frequency sinusoidal SLI that obtains the phase map at various fringe periods in order to estimate the absolute phase, and hence, the 3D surface information. Nevertheless, multi-frequency SLI systems employ multiple measurement planes (e.g. four phase shifted frames) to obtain the phase at a given fringe period. It is therefore an age old challenge to obtain the absolute surface information using fewer measurement frames. Grey level (GL) coding techniques have been developed as an attempt to reduce the number of planes needed, because a spatio-temporal GL sequence employing p discrete grey-levels and m frames has the potential to unwrap up to pm fringes. Nevertheless, one major disadvantage of GL based SLI techniques is that there are often errors near the border of each stripe, because an ideal stepwise intensity change cannot be measured. If the step-change in intensity is a single discrete grey-level unit, this problem can usually be overcome by applying an appropriate threshold. However, severe errors occur if the intensity change at the border of the stripe exceeds several discrete grey-level units. In this work, an optimum GL based technique is presented that generates a series of projection patterns with a minimal gradient in the intensity. It is shown that when using this technique, the errors near the border of the stripes can be significantly reduced. This improvement is achieved with the choice generated patterns, and does not involve additional hardware or special post-processing techniques. The performance of that method is validated using both simulations and experiments. The reported technique is generic, works with an arbitrary number of frames, and can employ an arbitrary number of grey-levels.

Phase locking of a seven-channel continuous wave fibre laser system by a stochastic parallel gradient algorithm

DOE Office of Scientific and Technical Information (OSTI.GOV)

Volkov, M V; Garanin, S G; Dolgopolov, Yu V

2014-11-30

A seven-channel fibre laser system operated by the master oscillator – multichannel power amplifier scheme is the phase locked using a stochastic parallel gradient algorithm. The phase modulators on lithium niobate crystals are controlled by a multichannel electronic unit with the microcontroller processing signals in real time. The dynamic phase locking of the laser system with the bandwidth of 14 kHz is demonstrated, the time of phasing is 3 – 4 ms. (fibre and integrated-optical structures)

Discovery of a meta-stable Al-Sm phase with unknown stoichiometry using a genetic algorithm

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Feng; McBrearty, Ian; Ott, R. T.

Unknown crystalline phases observed during the devitrification process of glassy metal alloys significantly limit our ability to understand and control phase selection in these systems driven far from equilibrium. Here, we report a new meta-stable Al 5Sm phase identified by simultaneously searching Al-rich compositions of the Al–Sm system, using an efficient genetic algorithm. The excellent match between calculated and experimental X-ray diffraction patterns confirms that this new phase appeared in the crystallization of melt-spun Al 90Sm 10 alloys.

Robust interferometric imaging via prior-less phase recovery: redundant spacing calibration with generalized-closure phases

NASA Astrophysics Data System (ADS)

Kurien, Binoy G.; Ashcom, Jonathan B.; Shah, Vinay N.; Rachlin, Yaron; Tarokh, Vahid

2017-01-01

Atmospheric turbulence presents a fundamental challenge to Fourier phase recovery in optical interferometry. Typical reconstruction algorithms employ Bayesian inference techniques which rely on prior knowledge of the scene under observation. In contrast, redundant spacing calibration (RSC) algorithms employ redundancy in the baselines of the interferometric array to directly expose the contribution of turbulence, thereby enabling phase recovery for targets of arbitrary and unknown complexity. Traditionally RSC algorithms have been applied directly to single-exposure measurements, which are reliable only at high photon flux in general. In scenarios of low photon flux, such as those arising in the observation of dim objects in space, one must instead rely on time-averaged, atmosphere-invariant quantities such as the bispectrum. In this paper, we develop a novel RSC-based algorithm for prior-less phase recovery in which we generalize the bispectrum to higher order atmosphere-invariants (n-spectra) for improved sensitivity. We provide a strategy for selection of a high-signal-to-noise ratio set of n-spectra using the graph-theoretic notion of the minimum cycle basis. We also discuss a key property of this set (wrap-invariance), which then enables reliable application of standard linear estimation techniques to recover the Fourier phases from the 2π-wrapped n-spectra phases. For validation, we analyse the expected shot-noise-limited performance of our algorithm for both pairwise and Fizeau interferometric architectures, and corroborate this analysis with simulation results showing performance near an atmosphere-oracle Cramer-Rao bound. Lastly, we apply techniques from the field of compressed sensing to perform image reconstruction from the estimated complex visibilities.

A path towards uncertainty assignment in an operational cloud-phase algorithm from ARM vertically pointing active sensors

DOE PAGES

Riihimaki, Laura D.; Comstock, Jennifer M.; Anderson, Kevin K.; ...

2016-06-10

Knowledge of cloud phase (liquid, ice, mixed, etc.) is necessary to describe the radiative impact of clouds and their lifetimes, but is a property that is difficult to simulate correctly in climate models. One step towards improving those simulations is to make observations of cloud phase with sufficient accuracy to help constrain model representations of cloud processes. In this study, we outline a methodology using a basic Bayesian classifier to estimate the probabilities of cloud-phase class from Atmospheric Radiation Measurement (ARM) vertically pointing active remote sensors. The advantage of this method over previous ones is that it provides uncertainty informationmore » on the phase classification. We also test the value of including higher moments of the cloud radar Doppler spectrum than are traditionally used operationally. Using training data of known phase from the Mixed-Phase Arctic Cloud Experiment (M-PACE) field campaign, we demonstrate a proof of concept for how the method can be used to train an algorithm that identifies ice, liquid, mixed phase, and snow. Over 95 % of data are identified correctly for pure ice and liquid cases used in this study. Mixed-phase and snow cases are more problematic to identify correctly. When lidar data are not available, including additional information from the Doppler spectrum provides substantial improvement to the algorithm. As a result, this is a first step towards an operational algorithm and can be expanded to include additional categories such as drizzle with additional training data.« less

A path towards uncertainty assignment in an operational cloud-phase algorithm from ARM vertically pointing active sensors

NASA Astrophysics Data System (ADS)

Riihimaki, Laura D.; Comstock, Jennifer M.; Anderson, Kevin K.; Holmes, Aimee; Luke, Edward

2016-06-01

Knowledge of cloud phase (liquid, ice, mixed, etc.) is necessary to describe the radiative impact of clouds and their lifetimes, but is a property that is difficult to simulate correctly in climate models. One step towards improving those simulations is to make observations of cloud phase with sufficient accuracy to help constrain model representations of cloud processes. In this study, we outline a methodology using a basic Bayesian classifier to estimate the probabilities of cloud-phase class from Atmospheric Radiation Measurement (ARM) vertically pointing active remote sensors. The advantage of this method over previous ones is that it provides uncertainty information on the phase classification. We also test the value of including higher moments of the cloud radar Doppler spectrum than are traditionally used operationally. Using training data of known phase from the Mixed-Phase Arctic Cloud Experiment (M-PACE) field campaign, we demonstrate a proof of concept for how the method can be used to train an algorithm that identifies ice, liquid, mixed phase, and snow. Over 95 % of data are identified correctly for pure ice and liquid cases used in this study. Mixed-phase and snow cases are more problematic to identify correctly. When lidar data are not available, including additional information from the Doppler spectrum provides substantial improvement to the algorithm. This is a first step towards an operational algorithm and can be expanded to include additional categories such as drizzle with additional training data.

Improvements to a five-phase ABS algorithm for experimental validation

NASA Astrophysics Data System (ADS)

Gerard, Mathieu; Pasillas-Lépine, William; de Vries, Edwin; Verhaegen, Michel

2012-10-01

The anti-lock braking system (ABS) is the most important active safety system for passenger cars. Unfortunately, the literature is not really precise about its description, stability and performance. This research improves a five-phase hybrid ABS control algorithm based on wheel deceleration [W. Pasillas-Lépine, Hybrid modeling and limit cycle analysis for a class of five-phase anti-lock brake algorithms, Veh. Syst. Dyn. 44 (2006), pp. 173-188] and validates it on a tyre-in-the-loop laboratory facility. Five relevant effects are modelled so that the simulation matches the reality: oscillations in measurements, wheel acceleration reconstruction, brake pressure dynamics, brake efficiency changes and tyre relaxation. The time delays in measurement and actuation have been identified as the main difficulty for the initial algorithm to work in practice. Three methods are proposed in order to deal with these delays. It is verified that the ABS limit cycles encircle the optimal braking point, without assuming any tyre parameter being a priori known. The ABS algorithm is compared with the commercial algorithm developed by Bosch.

Efficient Deterministic Finite Automata Minimization Based on Backward Depth Information.

PubMed

Liu, Desheng; Huang, Zhiping; Zhang, Yimeng; Guo, Xiaojun; Su, Shaojing

2016-01-01

Obtaining a minimal automaton is a fundamental issue in the theory and practical implementation of deterministic finite automatons (DFAs). A minimization algorithm is presented in this paper that consists of two main phases. In the first phase, the backward depth information is built, and the state set of the DFA is partitioned into many blocks. In the second phase, the state set is refined using a hash table. The minimization algorithm has a lower time complexity O(n) than a naive comparison of transitions O(n2). Few states need to be refined by the hash table, because most states have been partitioned by the backward depth information in the coarse partition. This method achieves greater generality than previous methods because building the backward depth information is independent of the topological complexity of the DFA. The proposed algorithm can be applied not only to the minimization of acyclic automata or simple cyclic automata, but also to automata with high topological complexity. Overall, the proposal has three advantages: lower time complexity, greater generality, and scalability. A comparison to Hopcroft's algorithm demonstrates experimentally that the algorithm runs faster than traditional algorithms.

Stochastic characterization of phase detection algorithms in phase-shifting interferometry

DOE PAGES

Munteanu, Florin

2016-11-01

Phase-shifting interferometry (PSI) is the preferred non-contact method for profiling sub-nanometer surfaces. Based on monochromatic light interference, the method computes the surface profile from a set of interferograms collected at separate stepping positions. Errors in the estimated profile are introduced when these positions are not located correctly. In order to cope with this problem, various algorithms that minimize the effects of certain types of stepping errors (linear, sinusoidal, etc.) have been developed. Despite the relatively large number of algorithms suggested in the literature, there is no unified way of characterizing their performance when additional unaccounted random errors are present. Here,more » we suggest a procedure for quantifying the expected behavior of each algorithm in the presence of independent and identically distributed (i.i.d.) random stepping errors, which can occur in addition to the systematic errors for which the algorithm has been designed. As a result, the usefulness of this method derives from the fact that it can guide the selection of the best algorithm for specific measurement situations.« less

Categorizing Variations of Student-Implemented Sorting Algorithms

ERIC Educational Resources Information Center

Taherkhani, Ahmad; Korhonen, Ari; Malmi, Lauri

2012-01-01

In this study, we examined freshmen students' sorting algorithm implementations in data structures and algorithms' course in two phases: at the beginning of the course before the students received any instruction on sorting algorithms, and after taking a lecture on sorting algorithms. The analysis revealed that many students have insufficient…

Improving best-phase image quality in cardiac CT by motion correction with MAM optimization

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rohkohl, Christopher; Bruder, Herbert; Stierstorfer, Karl

2013-03-15

Purpose: Research in image reconstruction for cardiac CT aims at using motion correction algorithms to improve the image quality of the coronary arteries. The key to those algorithms is motion estimation, which is currently based on 3-D/3-D registration to align the structures of interest in images acquired in multiple heart phases. The need for an extended scan data range covering several heart phases is critical in terms of radiation dose to the patient and limits the clinical potential of the method. Furthermore, literature reports only slight quality improvements of the motion corrected images when compared to the most quiet phasemore » (best-phase) that was actually used for motion estimation. In this paper a motion estimation algorithm is proposed which does not require an extended scan range but works with a short scan data interval, and which markedly improves the best-phase image quality. Methods: Motion estimation is based on the definition of motion artifact metrics (MAM) to quantify motion artifacts in a 3-D reconstructed image volume. The authors use two different MAMs, entropy, and positivity. By adjusting the motion field parameters, the MAM of the resulting motion-compensated reconstruction is optimized using a gradient descent procedure. In this way motion artifacts are minimized. For a fast and practical implementation, only analytical methods are used for motion estimation and compensation. Both the MAM-optimization and a 3-D/3-D registration-based motion estimation algorithm were investigated by means of a computer-simulated vessel with a cardiac motion profile. Image quality was evaluated using normalized cross-correlation (NCC) with the ground truth template and root-mean-square deviation (RMSD). Four coronary CT angiography patient cases were reconstructed to evaluate the clinical performance of the proposed method. Results: For the MAM-approach, the best-phase image quality could be improved for all investigated heart phases, with a maximum improvement of the NCC value by 100% and of the RMSD value by 81%. The corresponding maximum improvements for the registration-based approach were 20% and 40%. In phases with very rapid motion the registration-based algorithm obtained better image quality, while the image quality of the MAM algorithm was superior in phases with less motion. The image quality improvement of the MAM optimization was visually confirmed for the different clinical cases. Conclusions: The proposed method allows a software-based best-phase image quality improvement in coronary CT angiography. A short scan data interval at the target heart phase is sufficient, no additional scan data in other cardiac phases are required. The algorithm is therefore directly applicable to any standard cardiac CT acquisition protocol.« less

Focusing light through random photonic layers by four-element division algorithm

NASA Astrophysics Data System (ADS)

Fang, Longjie; Zhang, Xicheng; Zuo, Haoyi; Pang, Lin

2018-02-01

The propagation of waves in turbid media is a fundamental problem of optics with vast applications. Optical phase optimization approaches for focusing light through turbid media using phase control algorithm have been widely studied in recent years due to the rapid development of spatial light modulator. The existing approaches include element-based algorithms - stepwise sequential algorithm, continuous sequential algorithm and whole element optimization approaches - partitioning algorithm, transmission matrix approach and genetic algorithm. The advantage of element-based approaches is that the phase contribution of each element is very clear; however, because the intensity contribution of each element to the focal point is small especially for the case of large number of elements, the determination of the optimal phase for a single element would be difficult. In other words, the signal to noise ratio of the measurement is weak, leading to possibly local maximal during the optimization. As for whole element optimization approaches, all elements are employed for the optimization. Of course, signal to noise ratio during the optimization is improved. However, because more random processings are introduced into the processing, optimizations take more time to converge than the single element based approaches. Based on the advantages of both single element based approaches and whole element optimization approaches, we propose FEDA approach. Comparisons with the existing approaches show that FEDA only takes one third of measurement time to reach the optimization, which means that FEDA is promising in practical application such as for deep tissue imaging.

History matching by spline approximation and regularization in single-phase areal reservoirs

NASA Technical Reports Server (NTRS)

Lee, T. Y.; Kravaris, C.; Seinfeld, J.

1986-01-01

An automatic history matching algorithm is developed based on bi-cubic spline approximations of permeability and porosity distributions and on the theory of regularization to estimate permeability or porosity in a single-phase, two-dimensional real reservoir from well pressure data. The regularization feature of the algorithm is used to convert the ill-posed history matching problem into a well-posed problem. The algorithm employs the conjugate gradient method as its core minimization method. A number of numerical experiments are carried out to evaluate the performance of the algorithm. Comparisons with conventional (non-regularized) automatic history matching algorithms indicate the superiority of the new algorithm with respect to the parameter estimates obtained. A quasioptimal regularization parameter is determined without requiring a priori information on the statistical properties of the observations.

Phase retrieval by coherent modulation imaging

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Fucai; Chen, Bo; Morrison, Graeme R.

Phase retrieval is a long-standing problem in imaging when only the intensity of the wavefield can be recorded. Coherent diffraction imaging (CDI) is a lensless technique that uses iterative algorithms to recover amplitude and phase contrast images from diffraction intensity data. For general samples, phase retrieval from a single diffraction pattern has been an algorithmic and experimental challenge. Here we report a method of phase retrieval that uses a known modulation of the sample exit-wave. This coherent modulation imaging (CMI) method removes inherent ambiguities of CDI and uses a reliable, rapidly converging iterative algorithm involving three planes. It works formore » extended samples, does not require tight support for convergence, and relaxes dynamic range requirements on the detector. CMI provides a robust method for imaging in materials and biological science, while its single-shot capability will benefit the investigation of dynamical processes with pulsed sources, such as X-ray free electron laser.« less

Phase retrieval by coherent modulation imaging

DOE PAGES

Zhang, Fucai; Chen, Bo; Morrison, Graeme R.; ...

2016-11-18

Phase retrieval is a long-standing problem in imaging when only the intensity of the wavefield can be recorded. Coherent diffraction imaging (CDI) is a lensless technique that uses iterative algorithms to recover amplitude and phase contrast images from diffraction intensity data. For general samples, phase retrieval from a single diffraction pattern has been an algorithmic and experimental challenge. Here we report a method of phase retrieval that uses a known modulation of the sample exit-wave. This coherent modulation imaging (CMI) method removes inherent ambiguities of CDI and uses a reliable, rapidly converging iterative algorithm involving three planes. It works formore » extended samples, does not require tight support for convergence, and relaxes dynamic range requirements on the detector. CMI provides a robust method for imaging in materials and biological science, while its single-shot capability will benefit the investigation of dynamical processes with pulsed sources, such as X-ray free electron laser.« less

Optimizing phase to enhance optical trap stiffness.

PubMed

Taylor, Michael A

2017-04-03

Phase optimization offers promising capabilities in optical tweezers, allowing huge increases in the applied forces, trap stiff-ness, or measurement sensitivity. One key obstacle to potential applications is the lack of an efficient algorithm to compute an optimized phase profile, with enhanced trapping experiments relying on slow programs that would take up to a week to converge. Here we introduce an algorithm that reduces the wait from days to minutes. We characterize the achievable in-crease in trap stiffness and its dependence on particle size, refractive index, and optical polarization. We further show that phase-only control can achieve almost all of the enhancement possible with full wavefront shaping; for instance phase control allows 62 times higher trap stiffness for 10 μm silica spheres in water, while amplitude control and non-trivial polarization further increase this by 1.26 and 1.01 respectively. This algorithm will facilitate future applications in optical trapping, and more generally in wavefront optimization.

Phase retrieval by coherent modulation imaging.

PubMed

Zhang, Fucai; Chen, Bo; Morrison, Graeme R; Vila-Comamala, Joan; Guizar-Sicairos, Manuel; Robinson, Ian K

2016-11-18

Phase retrieval is a long-standing problem in imaging when only the intensity of the wavefield can be recorded. Coherent diffraction imaging is a lensless technique that uses iterative algorithms to recover amplitude and phase contrast images from diffraction intensity data. For general samples, phase retrieval from a single-diffraction pattern has been an algorithmic and experimental challenge. Here we report a method of phase retrieval that uses a known modulation of the sample exit wave. This coherent modulation imaging method removes inherent ambiguities of coherent diffraction imaging and uses a reliable, rapidly converging iterative algorithm involving three planes. It works for extended samples, does not require tight support for convergence and relaxes dynamic range requirements on the detector. Coherent modulation imaging provides a robust method for imaging in materials and biological science, while its single-shot capability will benefit the investigation of dynamical processes with pulsed sources, such as X-ray free-electron lasers.

DOLPHIn—Dictionary Learning for Phase Retrieval

NASA Astrophysics Data System (ADS)

Tillmann, Andreas M.; Eldar, Yonina C.; Mairal, Julien

2016-12-01

We propose a new algorithm to learn a dictionary for reconstructing and sparsely encoding signals from measurements without phase. Specifically, we consider the task of estimating a two-dimensional image from squared-magnitude measurements of a complex-valued linear transformation of the original image. Several recent phase retrieval algorithms exploit underlying sparsity of the unknown signal in order to improve recovery performance. In this work, we consider such a sparse signal prior in the context of phase retrieval, when the sparsifying dictionary is not known in advance. Our algorithm jointly reconstructs the unknown signal - possibly corrupted by noise - and learns a dictionary such that each patch of the estimated image can be sparsely represented. Numerical experiments demonstrate that our approach can obtain significantly better reconstructions for phase retrieval problems with noise than methods that cannot exploit such "hidden" sparsity. Moreover, on the theoretical side, we provide a convergence result for our method.

Time reversal and phase coherent music techniques for super-resolution ultrasound imaging

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huang, Lianjie; Labyed, Yassin

Systems and methods for super-resolution ultrasound imaging using a windowed and generalized TR-MUSIC algorithm that divides the imaging region into overlapping sub-regions and applies the TR-MUSIC algorithm to the windowed backscattered ultrasound signals corresponding to each sub-region. The algorithm is also structured to account for the ultrasound attenuation in the medium and the finite-size effects of ultrasound transducer elements. A modified TR-MUSIC imaging algorithm is used to account for ultrasound scattering from both density and compressibility contrasts. The phase response of ultrasound transducer elements is accounted for in a PC-MUSIC system.

Phase retrieval from intensity-only data by relative entropy minimization.

PubMed

Deming, Ross W

2007-11-01

A recursive algorithm, which appears to be new, is presented for estimating the amplitude and phase of a wave field from intensity-only measurements on two or more scan planes at different axial positions. The problem is framed as a nonlinear optimization, in which the angular spectrum of the complex field model is adjusted in order to minimize the relative entropy, or Kullback-Leibler divergence, between the measured and reconstructed intensities. The most common approach to this so-called phase retrieval problem is a variation of the well-known Gerchberg-Saxton algorithm devised by Misell (J. Phys. D6, L6, 1973), which is efficient and extremely simple to implement. The new algorithm has a computational structure that is very similar to Misell's approach, despite the fundamental difference in the optimization criteria used for each. Based upon results from noisy simulated data, the new algorithm appears to be more robust than Misell's approach and to produce better results from low signal-to-noise ratio data. The convergence of the new algorithm is examined.

Comparison between variable and fixed dwell-time PN acquisition algorithms. [for synchronization in pseudonoise spread spectrum systems

NASA Technical Reports Server (NTRS)

Braun, W. R.

1981-01-01

Pseudo noise (PN) spread spectrum systems require a very accurate alignment between the PN code epochs at the transmitter and receiver. This synchronism is typically established through a two-step algorithm, including a coarse synchronization procedure and a fine synchronization procedure. A standard approach for the coarse synchronization is a sequential search over all code phases. The measurement of the power in the filtered signal is used to either accept or reject the code phase under test as the phase of the received PN code. This acquisition strategy, called a single dwell-time system, has been analyzed by Holmes and Chen (1977). A synopsis of the field of sequential analysis as it applies to the PN acquisition problem is provided. From this, the implementation of the variable dwell time algorithm as a sequential probability ratio test is developed. The performance of this algorithm is compared to the optimum detection algorithm and to the fixed dwell-time system.

Investigation of new techniques for aircraft navigation using the omega navigation

NASA Technical Reports Server (NTRS)

Baxa, E. G., Jr.

1978-01-01

An OMEGA navigation receiver with a microprocessor as the computational component was investigated. A version of the INTEL 4004 microprocessor macroassembler suitable for use on the CDC-6600 system and development of a FORTRAN IV simulator program for the microprocessor was developed. Supporting studies included development and evaluation of navigation algorithms to generate relative position information from OMEGA VLF phase measurements. Simulation studies were used to evaluate assumptions made in developing a navigation equation in OMEGA Line of Position (LOP) coordinates. Included in the navigation algorithms was a procedure for calculating a position in latitude/longitude given an OMEGA LOP fix. Implementation of a digital phase locked loop (DPLL) was evaluated on the basic of phase response characteristics over a range of input phase variations. Included also is an analytical evaluation on the basis of error probability of an algorithm for automatic time synchronization of the receiver to the OMEGA broadcast format. The use of actual OMEGA phase data and published propagation prediction corrections to determine phase velocity estimates was discussed.

Fast fringe pattern phase demodulation using FIR Hilbert transformers

NASA Astrophysics Data System (ADS)

Gdeisat, Munther; Burton, David; Lilley, Francis; Arevalillo-Herráez, Miguel

2016-01-01

This paper suggests the use of FIR Hilbert transformers to extract the phase of fringe patterns. This method is computationally faster than any known spatial method that produces wrapped phase maps. Also, the algorithm does not require any parameters to be adjusted which are dependent upon the specific fringe pattern that is being processed, or upon the particular setup of the optical fringe projection system that is being used. It is therefore particularly suitable for full algorithmic automation. The accuracy and validity of the suggested method has been tested using both computer-generated and real fringe patterns. This novel algorithm has been proposed for its advantages in terms of computational processing speed as it is the fastest available method to extract the wrapped phase information from a fringe pattern.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Claus, Rene A.; Wang, Yow-Gwo; Wojdyla, Antoine

Extreme Ultraviolet (EUV) Lithography mask defects were examined on the actinic mask imaging system, SHARP, at Lawrence Berkeley National Laboratory. Also, a quantitative phase retrieval algorithm based on the Weak Object Transfer Function was applied to the measured through-focus aerial images to examine the amplitude and phase of the defects. The accuracy of the algorithm was demonstrated by comparing the results of measurements using a phase contrast zone plate and a standard zone plate. Using partially coherent illumination to measure frequencies that would otherwise fall outside the numerical aperture (NA), it was shown that some defects are smaller than themore » conventional resolution of the microscope. We found that the programmed defects of various sizes were measured and shown to have both an amplitude and a phase component that the algorithm is able to recover.« less

Improving the efficiency of molecular replacement by utilizing a new iterative transform phasing algorithm

DOE Office of Scientific and Technical Information (OSTI.GOV)

He, Hongxing; Fang, Hengrui; Miller, Mitchell D.

2016-07-15

An iterative transform algorithm is proposed to improve the conventional molecular-replacement method for solving the phase problem in X-ray crystallography. Several examples of successful trial calculations carried out with real diffraction data are presented. An iterative transform method proposed previously for direct phasing of high-solvent-content protein crystals is employed for enhancing the molecular-replacement (MR) algorithm in protein crystallography. Target structures that are resistant to conventional MR due to insufficient similarity between the template and target structures might be tractable with this modified phasing method. Trial calculations involving three different structures are described to test and illustrate the methodology. The relationshipmore » of the approach to PHENIX Phaser-MR and MR-Rosetta is discussed.« less

Fizeau interferometric cophasing of segmented mirrors: experimental validation.

PubMed

Cheetham, Anthony; Cvetojevic, Nick; Norris, Barnaby; Sivaramakrishnan, Anand; Tuthill, Peter

2014-06-02

We present an optical testbed demonstration of the Fizeau Interferometric Cophasing of Segmented Mirrors (FICSM) algorithm. FICSM allows a segmented mirror to be phased with a science imaging detector and three filters (selected among the normal science complement). It requires no specialised, dedicated wavefront sensing hardware. Applying random piston and tip/tilt aberrations of more than 5 wavelengths to a small segmented mirror array produced an initial unphased point spread function with an estimated Strehl ratio of 9% that served as the starting point for our phasing algorithm. After using the FICSM algorithm to cophase the pupil, we estimated a Strehl ratio of 94% based on a comparison between our data and simulated encircled energy metrics. Our final image quality is limited by the accuracy of our segment actuation, which yields a root mean square (RMS) wavefront error of 25 nm. This is the first hardware demonstration of coarse and fine phasing an 18-segment pupil with the James Webb Space Telescope (JWST) geometry using a single algorithm. FICSM can be implemented on JWST using any of its scientic imaging cameras making it useful as a fall-back in the event that accepted phasing strategies encounter problems. We present an operational sequence that would co-phase such an 18-segment primary in 3 sequential iterations of the FICSM algorithm. Similar sequences can be readily devised for any segmented mirror.

Advanced Dispersed Fringe Sensing Algorithm for Coarse Phasing Segmented Mirror Telescopes

NASA Technical Reports Server (NTRS)

Spechler, Joshua A.; Hoppe, Daniel J.; Sigrist, Norbert; Shi, Fang; Seo, Byoung-Joon; Bikkannavar, Siddarayappa A.

2013-01-01

Segment mirror phasing, a critical step of segment mirror alignment, requires the ability to sense and correct the relative pistons between segments from up to a few hundred microns to a fraction of wavelength in order to bring the mirror system to its full diffraction capability. When sampling the aperture of a telescope, using auto-collimating flats (ACFs) is more economical. The performance of a telescope with a segmented primary mirror strongly depends on how well those primary mirror segments can be phased. One such process to phase primary mirror segments in the axial piston direction is dispersed fringe sensing (DFS). DFS technology can be used to co-phase the ACFs. DFS is essentially a signal fitting and processing operation. It is an elegant method of coarse phasing segmented mirrors. DFS performance accuracy is dependent upon careful calibration of the system as well as other factors such as internal optical alignment, system wavefront errors, and detector quality. Novel improvements to the algorithm have led to substantial enhancements in DFS performance. The Advanced Dispersed Fringe Sensing (ADFS) Algorithm is designed to reduce the sensitivity to calibration errors by determining the optimal fringe extraction line. Applying an angular extraction line dithering procedure and combining this dithering process with an error function while minimizing the phase term of the fitted signal, defines in essence the ADFS algorithm.

Low dose reconstruction algorithm for differential phase contrast imaging.

PubMed

Wang, Zhentian; Huang, Zhifeng; Zhang, Li; Chen, Zhiqiang; Kang, Kejun; Yin, Hongxia; Wang, Zhenchang; Marco, Stampanoni

2011-01-01

Differential phase contrast imaging computed tomography (DPCI-CT) is a novel x-ray inspection method to reconstruct the distribution of refraction index rather than the attenuation coefficient in weakly absorbing samples. In this paper, we propose an iterative reconstruction algorithm for DPCI-CT which benefits from the new compressed sensing theory. We first realize a differential algebraic reconstruction technique (DART) by discretizing the projection process of the differential phase contrast imaging into a linear partial derivative matrix. In this way the compressed sensing reconstruction problem of DPCI reconstruction can be transformed to a resolved problem in the transmission imaging CT. Our algorithm has the potential to reconstruct the refraction index distribution of the sample from highly undersampled projection data. Thus it can significantly reduce the dose and inspection time. The proposed algorithm has been validated by numerical simulations and actual experiments.

An adaptive reentry guidance method considering the influence of blackout zone

NASA Astrophysics Data System (ADS)

Wu, Yu; Yao, Jianyao; Qu, Xiangju

2018-01-01

Reentry guidance has been researched as a popular topic because it is critical for a successful flight. In view that the existing guidance methods do not take into account the accumulated navigation error of Inertial Navigation System (INS) in the blackout zone, in this paper, an adaptive reentry guidance method is proposed to obtain the optimal reentry trajectory quickly with the target of minimum aerodynamic heating rate. The terminal error in position and attitude can be also reduced with the proposed method. In this method, the whole reentry guidance task is divided into two phases, i.e., the trajectory updating phase and the trajectory planning phase. In the first phase, the idea of model predictive control (MPC) is used, and the receding optimization procedure ensures the optimal trajectory in the next few seconds. In the trajectory planning phase, after the vehicle has flown out of the blackout zone, the optimal reentry trajectory is obtained by online planning to adapt to the navigation information. An effective swarm intelligence algorithm, i.e. pigeon inspired optimization (PIO) algorithm, is applied to obtain the optimal reentry trajectory in both of the two phases. Compared to the trajectory updating method, the proposed method can reduce the terminal error by about 30% considering both the position and attitude, especially, the terminal error of height has almost been eliminated. Besides, the PIO algorithm performs better than the particle swarm optimization (PSO) algorithm both in the trajectory updating phase and the trajectory planning phases.