Sample records for pinta
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PINTA: a web server for network-based gene prioritization from expression data
Nitsch, Daniela; Tranchevent, Léon-Charles; Gonçalves, Joana P.; Vogt, Josef Korbinian; Madeira, Sara C.; Moreau, Yves
2011-01-01
PINTA (available at http://www.esat.kuleuven.be/pinta/; this web site is free and open to all users and there is no login requirement) is a web resource for the prioritization of candidate genes based on the differential expression of their neighborhood in a genome-wide protein–protein interaction network. Our strategy is meant for biological and medical researchers aiming at identifying novel disease genes using disease specific expression data. PINTA supports both candidate gene prioritization (starting from a user defined set of candidate genes) as well as genome-wide gene prioritization and is available for five species (human, mouse, rat, worm and yeast). As input data, PINTA only requires disease specific expression data, whereas various platforms (e.g. Affymetrix) are supported. As a result, PINTA computes a gene ranking and presents the results as a table that can easily be browsed and downloaded by the user. PMID:21602267
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NASA Astrophysics Data System (ADS)
Schlitzer, W.; Harpp, K. S.; Mittelstaedt, E. L.; Kurz, M. D.; Geist, D.
2011-12-01
The platform supporting the Galápagos Archipelago extends ~50 km NW toward the Galápagos Spreading Center (GSC) into the Northern Galapagos Volcanic Province (NGVP), where it underlies Pinta, Marchena, and Genovesa Islands. Approximately 45 km north of Pinta is the southern termination of a ~100-km long transform fault, at 90o50'W. The seafloor surrounding the NGVP was surveyed and dredged during the 2010 MV1007 and 2001 DRIFT04 cruises. All the large volcanoes, including the islands, have elongate bathymetric footprints with extensive submarine ridges. Lavas from this small region (<150 km in diameter) exhibit isotopic and trace element signatures that span the compositional range of the entire Galápagos Archipelago. Pinta and its submarine extension have the most enriched signatures, whereas at the eastern end of the platform extension, Genovesa is indistinguishable from normal MORB. Samples dredged around Pinta and Marchena have intermediate compositions. In contrast, lavas from the adjacent transform fault are more depleted than those from Genovesa and anywhere along the GSC for hundreds of km in both directions. Lavas from this region exhibit a range of 3He/4He (6.5-9.5 Ra), significantly lower than the high 3He/4He signature of material erupted by the plume-rich western Galápagos shield volcanoes (>25 Ra). Whereas the compositions of lavas erupted on the Nazca Plate in the NGVP require 3 or more distinct mantle endmembers to explain their compositions, our data indicate that the platform extension region only requires components previously described for the Galápagos Islands. In addition, Sm/Yb decreases abruptly along an E-W transect from Pinta to Genovesa. Gibson and Geist (2010) concluded that Sm/Yb ratios reflect variations in surface wave velocities (Villagomez et al., 2007), enabling them to predict lithospheric thickness. We apply the relationship defined by Gibson and Geist to map lithospheric thickness across our study area. Our results suggest that the lithosphere (and thus minimum melt generation depth) gets progressively shallower from Pinta to Genovesa; this phenomenon may explain unexpected Holocene volcanism in the NGVP. The wide range in Sm/Yb further suggests a complex lithospheric structure underlying the platform extension, which we propose reflects formation of the adjacent GSC transform fault within the last ~3 Ma, possibly through a series of ridge jumps as suggested by modeling of new magnetic data. We propose a model in which heterogeneous plume material with enriched and depleted components (Ito and Mahoney, 2005) is migrating toward the GSC along the base of the lithosphere, having previously lost its primordial helium signature during deep melting near the western shield volcanoes. As the material crosses the complex lithospheric thickness variations in the NGVP, melt generation becomes progressively shallower. The enriched compositions at Pinta thus result from limited, deep melting of enriched compositions owing to a thick lithospheric cap. East of Pinta, the plume melts more extensively and to shallower depths, producing progressively depleted signatures toward Genovesa.
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Replicas of the Santa Maria, Nina, Pinta sail by OV-105 on KSC LC Pad 39B
NASA Technical Reports Server (NTRS)
1992-01-01
Replicas of Christopher Columbus' sailing ships Santa Maria, Nina, and Pinta sail by Endeavour, Orbiter Vehicle (OV) 105, on Kennedy Space Center (KSC) Launch Complex (LC) Pad 39B awaiting liftoff on its maiden voyage, STS-49. This view was taken from the water showing the three ships in the foreground with OV-105 on mobile launcher platform profiled against fixed service structure (FSS) tower and rectracted rotating service structure (RSS) in the background. Next to the launch pad (at right) are the sound suppression water system tower and the liquid hydrogen (LH2) storage tank. View provided by KSC with alternate number KSC-92PC-967.
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NASA Astrophysics Data System (ADS)
Navas-Parejo, Pilar; Lara-Peña, R. Aaron; Torres-Martínez, Miguel Angel; Martini, Michelangelo
2018-07-01
A transported crinoid fauna is herein described for the first time in the Paleozoic succession cropping out in the Sierra Las Pintas, northern Baja California, northwestern Mexico. The fossil association includes Heterostelechus texanus Moore and Jeffords, Preptopremnum laeve? Moore and Jeffords, and Mooreanteris perforatus Moore and Jeffords, which indicates a Middle Pennsylvanian-early Permian time-averaged age. The studied area corresponds with the northernmost outcrop of definitely late Paleozoic deep-water facies in northwestern Mexico and the southern United States. Petrographic analyses indicate that the studied metasandstones were primarily derived from high-grade metamorphic rocks and from a shallow-water platform environment dominated by crinoid meadows. These results allow the correlation of the studied metasedimentary rocks with the Carboniferous Rancho Nuevo Formation of the Sonora allochthon, which crops out in central Sonora. The Sonora allochthon includes an Early Ordovician-Late Pennsylvanian sedimentary succession that was deposited in the oceanic basin located south of the Laurentian craton. Therefore, upper Paleozoic metasedimentary rocks of the Sierra Las Pintas were deposited along the same continental margin of Laurentia as those rocks in the Sonora allochthon, and were mostly derived from metamorphic rocks of the continental craton and by the typical Carboniferous encrinites, which characterize the shallow-water rocks of central and northern Sonora.
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Replicas of the Santa Maria, Nina, Pinta sail by OV-105 on KSC LC Pad 39B
1992-05-06
S92-39074 (6 May 1992) --- The centuries-old technology that built Christopher Columbus' three sailing ships passes within a half mile of the 20th-Century Space Shuttle Endeavour, in background, awaiting liftoff on Launch Pad 39B. The replicas of the Santa Maria, Nina, and Pinta wind-powered ships, managed by the Spain '92 Foundation, are on a tour to ports around the Gulf of Mexico and up the Atlantic Coast of the United States. Endeavour is set to lift off on its maiden voyage, STS-49, on May 7, 1992. Video footage of the two types of exploration vessels will be used by NASA for a variety of productions, including the annual Von Braun Exploration forum sponsored by NASA's Marshall Space Flight Center (MSFC), Huntsville, Alabama, in October, 1992. This year's theme is Exploration and the Evolution of Nations. 1992 is the 500th anniversary of Columbus' voyage to the New World.
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NASA Astrophysics Data System (ADS)
Sinton, C.; Mittelstaedt, E. L.; Harpp, K. S.; Fornari, D. J.; Geist, D.; Soule, S. A.
2016-12-01
The Northern Galápagos Volcanic Province (NGVP), located north of the Galápagos Archipelago and centered across the 90° 50'W Galápagos transform fault (GTF) of the Galápagos Spreading Center (GSC), consists of a complex set of islands, seamount chains and ridges. The region is particularly important to deciphering the evolution of the Galápagos region as magmatism in this region is thought to be the result of interactions between the Galápagos mantle plume, the overlying lithosphere, and the GSC. To investigate the evolution of these interactions, we present seafloor images, bathymetry, and 40Ar-39Ar age data from a volcanic ridge that includes the islands of Pinta and Marchena. The most striking feature of this region is a flat-topped seamount, Banco Tuzo, with a shallow summit region reaching to 360-400 meters below sea level. Recovered basalt fragments from Banco Tuzo include sub-rounded rocks with morphologies that suggest exposure to a tidal environment. Ages of the lavas determined by 40Ar-39Ar dating vary from 2.0 Ma to 1.1 Ma (with 2σ error of ± 0.5 Ma). The subsidence rate calculated by the radiometric ages is similar to that estimated for young oceanic lithosphere. Our observations indicate that Banco Tuzo is an ancient, now submerged island. Other lavas recovered from the submarine flanks of Pinta and Marchena range in age from 1.4 to 0.6 Ma. These ages generally coincide with the westward propagation of the eastern GSC and the southward elongation of the GTF after a recent ridge jump ( 1 Ma), suggesting that magmatism along this ridge is related to the changing relative location of GSC and the upwelling Galapagos mantle plume.
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Hunter, Elizabeth A; Gibbs, James P; Cayot, Linda J; Tapia, Washington
2013-08-01
Loss of key plant-animal interactions (e.g., disturbance, seed dispersal, and herbivory) due to extinctions of large herbivores has diminished ecosystem functioning nearly worldwide. Mitigating for the ecological consequences of large herbivore losses through the use of ecological replacements to fill extinct species' niches and thereby replicate missing ecological functions has been proposed. It is unknown how different morphologically and ecologically a replacement can be from the extinct species and still provide similar functions. We studied niche equivalency between 2 phenotypes of Galápagos giant tortoises (domed and saddlebacked) that were translocated to Pinta Island in the Galápagos Archipelago as ecological replacements for the extinct saddlebacked giant tortoise (Chelonoidis abingdonii). Thirty-nine adult, nonreproductive tortoises were introduced to Pinta Island in May 2010, and we observed tortoise resource use in relation to phenotype during the first year following release. Domed tortoises settled in higher, moister elevations than saddlebacked tortoises, which favored lower elevation arid zones. The areas where the tortoises settled are consistent with the ecological conditions each phenotype occupies in its native range. Saddlebacked tortoises selected areas with high densities of the arboreal prickly pear cactus (Opuntia galapageia) and mostly foraged on the cactus, which likely relied on the extinct saddlebacked Pinta tortoise for seed dispersal. In contrast, domed tortoises did not select areas with cactus and therefore would not provide the same seed-dispersal functions for the cactus as the introduced or the original, now extinct, saddlebacked tortoises. Interchangeability of extant megaherbivores as replacements for extinct forms therefore should be scrutinized given the lack of equivalency we observed in closely related forms of giant tortoises. Our results also demonstrate the value of trial introductions of sterilized individuals to test niche equivalency among candidate analog species. © 2013 Society for Conservation Biology.
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Beyond La Nina, La Pinta, and La Santa Maria: The Invention and Mental Mapping of the New World
ERIC Educational Resources Information Center
Fernandez, Luis Martinez
2013-01-01
The topics of Columbus's voyages of exploration, the first encounters between Amerindians and Europeans, and the ensuing collision of their respective worlds provide ample opportunities for creative and stimulating pedagogical approaches that go beyond the stale memorization of dates, places, and names. This essay and accompanying classroom…
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The European-American exchange.
Guerra, F
1993-01-01
The European-American exchange of infectious diseases was responsible for the demographic havoc of the native population in the New World after 1492. Prior to this date medical writers describe the presence in Spain of viral diseases like influenza, parotitis, smallpox, measles, poliomyelitis, and rabies; there were also rickettsiasis, diphtheria, salmonellosis, plague, tubercolosis, leprosy, malaria, scabies and tinea. In America, before European arrivals, there were no records of human viral diseases, though there were records of rickettsiasis, treponematosis--pinta, yaws and syphilis--leihsmaniasis, amibiasis and perhaps leprosy. With the discovery of America in 1492, Columbus's sailors were contaminated by yaws and spread this disease into Europe. In 1493 influenza, as a zoonosis, was introduced into Santo Domingo and was responsible for the annihilation of the natives of the Antilles in less than a quarter of a century; in 1518 smallpox was also introduced in Santo Domingo and then to the American continent by negro slaves: by the same means measles were introduced in 1531. The previous existence or introduction of other infectious diseases in America is also discussed.
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Šmajs, David; Norris, Steven J.; Weinstock, George M.
2013-01-01
Pathogenic uncultivable treponemes, similar to syphilis-causing Treponema pallidum subspecies pallidum, include T. pallidum ssp. pertenue, T. pallidum ssp. endemicum and Treponema carateum, which cause yaws, bejel and pinta, respectively. Genetic analyses of these pathogens revealed striking similarity among these bacteria and also a high degree of similarity to the rabbit pathogen, T. paraluiscuniculi, a treponeme not infectious to humans. Genome comparisons between pallidum and non-pallidum treponemes revealed genes with potential involvement in human infectivity, whereas comparisons between pallidum and pertenue treponemes identified genes possibly involved in the high invasivity of syphilis treponemes. Genetic variability within syphilis strains is considered as the basis of syphilis molecular epidemiology with potential to detect more virulent strains, whereas genetic variability within a single strain is related to its ability to elude the immune system of the host. Genome analyses also shed light on treponemal evolution and on chromosomal targets for molecular diagnostics of treponemal infections. PMID:22198325
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Giacani, Lorenzo
2014-01-01
SUMMARY The agents of human treponematoses include four closely related members of the genus Treponema: three subspecies of Treponema pallidum plus Treponema carateum. T. pallidum subsp. pallidum causes venereal syphilis, while T. pallidum subsp. pertenue, T. pallidum subsp. endemicum, and T. carateum are the agents of the endemic treponematoses yaws, bejel (or endemic syphilis), and pinta, respectively. All human treponematoses share remarkable similarities in pathogenesis and clinical manifestations, consistent with the high genetic and antigenic relatedness of their etiological agents. Distinctive features have been identified in terms of age of acquisition, most common mode of transmission, and capacity for invasion of the central nervous system and fetus, although the accuracy of these purported differences is debated among investigators and no biological basis for these differences has been identified to date. In 2012, the World Health Organization (WHO) officially set a goal for yaws eradication by 2020. This challenging but potentially feasible endeavor is favored by the adoption of oral azithromycin for mass treatment and the currently focused distribution of yaws and endemic treponematoses and has revived global interest in these fascinating diseases and their causative agents. PMID:24396138
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Schmitz, Patrick; Cibois, Alice; Landry, Bernard
2008-10-27
To gain insight into the early stages of speciation, we reconstructed a DNA-based phylogeny, using combined mitochondrial (cytochrome c oxidase subunits I and II: 1008 bp) and nuclear (elongation factor 1-alpha and wingless: 1062 bp) markers of populations of the moth Galagete darwini endemic to the Galápagos, which belongs to an insular radiation similar in size to that of Darwin's finches. Adults of G. darwini were collected in the arid lowlands of 11 of the Galápagos Islands (Baltra, Española, Fernandina, Floreana, Isabela, Pinta, Pinzón, San Cristobal, Santa Cruz, Santiago and Seymour) and the humid highlands of a subset of 5 of them (Fernandina, Floreana, Isabela, Santa Cruz and Santiago). The combined phylogeographic analysis surprisingly revealed that G. darwini populations at higher elevation on the western islands (Fernandina, Isabela and Santiago) represent a distinct lineage from the one in the low arid zones of these same islands. This is the first reported case in the archipelago of genetic cryptic differentiation correlated with elevation on the western Galápagos volcanoes.
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Rodríguez-Ibarra, Erick; Pulido-Flores, Griselda; Violante-González, Juan; Monks, Scott
2018-01-01
The helminthological examination of nine individuals of Aetobatus cf. narinari (spotted eagle ray; raya pinta; arraia pintada) revealed the presence of an undescribed species of cestode of the genus Acanthobothrium. The stingrays were collected from four locations in México: Laguna Términos, south of Isla del Carmen and the marine waters north of Isla del Carmen and Champotón, in the State of Campeche, and Isla Holbox, State of Quintana Roo. The new species, nominated Acanthobothrium marquesi, is a category 3 species (i.e, the strobila is long, has more than 50 proglottids, the numerous testicles greater than 80, and has asymmetrically-lobed ovaries); at the present, the only category 3 species that has been reported in the Western Atlantic Ocean is Acanthobothrium tortum. Acanthobothrium marquesi n. sp. can be distinguished from A. tortum by length (26.1 cm vs. 10.6 cm), greater number of proglottids (1,549 vs. 656), a larger scolex (707 µm long by 872 µm wide vs. 699 µm long by 665 µm wide), larger bothridia (626 µm long by 274 µm wide vs. 563 µm long by 238 µm wide). This is the first report of a species of Acanthobothrium from the Mexican coast of the Gulf México.
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Laplana, César; Sevilla, Paloma; Arsuaga, Juan Luis; Arriaza, Mari Carmen; Baquedano, Enrique; Pérez-González, Alfredo
2015-01-01
This paper reports the first find of pika remains in the Iberian Peninsula, at a site in central Spain. A fragmented mandible of Ochotona cf. pusilla was unearthed from Layer 3 (deposited some 63.4±5.5 ka ago as determined by thermoluminescence) of the Buena Pinta Cave. This record establishes new limits for the genus geographic distribution during the Pleistocene, shifting the previous edge of its known range southwest by some 500 km. It also supports the idea that, even though Europe’s alpine mountain ranges represented a barrier that prevented the dispersal into the south to this and other taxa of small mammals from central and eastern Europe, they were crossed or circumvented at the coldest time intervals of the end of the Middle Pleistocene and of the Late Pleistocene. During those periods both the reduction of the forest cover and the emersion of large areas of the continental shelf due to the drop of the sea level probably provided these species a way to surpass this barrier. The pika mandible was found accompanying the remains of other small mammals adapted to cold climates, indicating the presence of steppe environments in central Iberia during the Late Pleistocene. PMID:26535576
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Olivatti, A M; Boni, T A; Silva-Júnior, N J; Resende, L V; Gouveia, F O; Telles, M P C
2011-01-01
Leporinus friderici, native to the Amazon Basin and popularly known as "piau-três-pintas", has great ecological and economic importance; it is widely fished and consumed throughout much of tropical South America. Knowledge of the genetic diversity of this native species is important to support management and conservation programs. We evaluated microsatellite loci amplification, using heterologous primers, in 31 individuals of L. friderici. These samples were collected from natural populations of the Araguaia River basin, in central Brazil, and the DNA was extracted from samples of muscle tissue. Eight loci were successfully analyzed. Six of them were polymorphic, and the number of alleles ranged from three to 10. Values of expected heterozygosities for these polymorphic loci ranged from 0.488 to 0.795. Exclusion probability (0.983), the identity probability (0.000073), and the mean genetic diversity values were high, showing that these microsatellite markers are suitable for assessing the genetic variability of L. friderici populations. There is a growing interest in studies that evaluate the genetic variability of natural populations for various purposes, such as conservation. Here, we showed that a viable alternative to the costly development of specific primers for fish populations is simply testing for heterologous amplification of microsatellite markers available from research on other species.
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The origin of the treponematoses
Cockburn, Thomas A.
1961-01-01
An attempt is made to explain along Darwinian lines the steps by which the treponematoses evolved and how they came to have their present distributions and characteristics. The original ancestors of the treponemes would have been free-living organisms, but various forms of symbiosis with larger creatures would in time lead to the development of parasitism with varying degrees of pathogenicity. Modern man may have acquired his treponemes from his ungeneralized primate ancestors and taken them with him on his migrations over the world. Isolation of man in different continents, especially after the end of the Ice Age, would lead to speciation in both man and his parasites; this would account for the features of pinta in Central America. Ecological isolations would produce syphilis and yaws, the latter being successful in warm areas where no clothes were worn or overcrowding was gross, and syphilis being successful in colder climates but not in endemic yaws areas where so many people were immune by puberty. A syphilis organism has little chance of survival if it fails to infect the genitalia. This is perhaps the reason for congenital infections in that disease. The organotropic properties of syphilis treponemes may be the results of repeated passage through the foetus; the conditions for survival in the foetus are much different from those in the mother, so that organotropic rather than genitotropic strains would be selected. PMID:13694226
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Tools for opening new chapters in the book of Treponema pallidum evolutionary history.
Gogarten, J F; Düx, A; Schuenemann, V J; Nowak, K; Boesch, C; Wittig, R M; Krause, J; Calvignac-Spencer, S; Leendertz, F H
2016-11-01
Treponema pallidum infections causing yaws disease and venereal syphilis are globally widespread in human populations, infecting hundreds of thousands and millions annually respectively; endemic syphilis is much less common, and pinta has not been observed in decades. We discuss controversy surrounding the origin, evolution and history of these pathogens in light of available molecular and anthropological evidence. These bacteria (or close relatives) seem to affect many wild African nonhuman primate (NHP) species, though to date only a single NHP Treponema pallidum genome has been published, hindering detection of spillover events and our understanding of potential wildlife reservoirs. Similarly, only ten genomes of Treponema pallidum infecting humans have been published, impeding a full understanding of their diversity and evolutionary history. Research efforts have been hampered by the difficulty of culturing and propagating Treponema pallidum. Here we highlight avenues of research recently opened by the coupling of hybridization capture and next-generation sequencing. We present data generated with such an approach suggesting that asymptomatic bones from NHP occasionally contain enough treponemal DNA to recover large fractions of their genomes. We expect that these methods, which naturally can be applied to modern biopsy samples and ancient human bones, will soon considerably improve our understanding of these enigmatic pathogens and lay rest to old yet unresolved controversies. Copyright © 2016 European Society of Clinical Microbiology and Infectious Diseases. Published by Elsevier Ltd. All rights reserved.
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On the origin of the human treponematoses
Hackett, C. J.
1963-01-01
A close relationship between the four human treponematoses is suggested by their clinical and epidemiological characteristics and by such limited knowledge of the treponemes as there is at present. No treponeme of this group (except for that of the rabbit) is known other than in man, but the human treponemes probably arose long ago from an animal infection. The long period of infectiousness of pinta suggests that it may have been the earliest human treponematosis. It may have been spread throughout the world by about 15 000 B.C., being subsequently isolated in the Americas when the Bering Strait was flooded. About 10 000 B.C. in the Afro-Asian land mass environmental conditions might have favoured treponeme mutants leading to yaws; from these, about 7000 B.C., endemic syphilis perhaps developed, to give rise to venereal syphilis about 3000 B.C. in south-west Asia as big cities developed there. Towards the end of the fifteenth century A.D. a further mutation may have resulted in a more severe venereal syphilis in Europe which, with European exploration and geographical expansion, was subsequently carried throughout the then treponemally uncommitted world. These suggestions find some tentative support in climatic changes which might have influenced the selection of those treponemes which still survive in humid or arid climates. Venereal transmission would presumably remove the treponeme from the direct influence of climate. The author makes a plea for further investigation of many aspects of this subject while this is still possible. PMID:14043755
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Čejková, Darina; Strouhal, Michal; Norris, Steven J; Weinstock, George M; Šmajs, David
2015-01-01
Pathogenic uncultivable treponemes comprise human and animal pathogens including agents of syphilis, yaws, bejel, pinta, and venereal spirochetosis in rabbits and hares. A set of 10 treponemal genome sequences including those of 4 Treponema pallidum ssp. pallidum (TPA) strains (Nichols, DAL-1, Mexico A, SS14), 4 T. p. ssp. pertenue (TPE) strains (CDC-2, Gauthier, Samoa D, Fribourg-Blanc), 1 T. p. ssp. endemicum (TEN) strain (Bosnia A) and one strain (Cuniculi A) of Treponema paraluisleporidarum ecovar Cuniculus (TPLC) were examined with respect to the presence of nucleotide intrastrain heterogeneous sites. The number of identified intrastrain heterogeneous sites in individual genomes ranged between 0 and 7. Altogether, 23 intrastrain heterogeneous sites (in 17 genes) were found in 5 out of 10 investigated treponemal genomes including TPA strains Nichols (n = 5), DAL-1 (n = 4), and SS14 (n = 7), TPE strain Samoa D (n = 1), and TEN strain Bosnia A (n = 5). Although only one heterogeneous site was identified among 4 tested TPE strains, 16 such sites were identified among 4 TPA strains. Heterogeneous sites were mostly strain-specific and were identified in four tpr genes (tprC, GI, I, K), in genes involved in bacterial motility and chemotaxis (fliI, cheC-fliY), in genes involved in cell structure (murC), translation (prfA), general and DNA metabolism (putative SAM dependent methyltransferase, topA), and in seven hypothetical genes. Heterogeneous sites likely represent both the selection of adaptive changes during infection of the host as well as an ongoing diversifying evolutionary process.
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Esau, Tommy; Asugeni, Rowena; Harrington, Relmah; Diau, Jason; Toloka, Hilary; Asugeni, James; Ansbro, Eimhin; Solomon, Anthony W.; Maclaren, David; Redman-Maclaren, Michelle; Mabey, David C. W.
2018-01-01
Introduction The human treponematoses comprise venereal syphilis and the three non-venereal or endemic treponematoses yaws, bejel, and pinta. Serological assays remain the most common diagnostic method for all treponemal infections. Point-of-care tests (POCTs) for syphilis and yaws allow testing without further development of infrastructure in populations where routine laboratory facilities are not available. Alongside the test’s performance characteristics assessed through diagnostic evaluation, it is important to consider broader issues when rolling out a POCT. Experience with malaria POCT roll-out in sub-Saharan Africa has demonstrated that both healthcare worker and patient beliefs may play a major role in shaping the real-world use of POCTs. We conducted a qualitative study evaluating healthcare worker and patient perceptions of using a syphilis/yaws POCT in clinics in the East Malaita region of Malaita province in the Solomon Islands. Prior to the study serology was only routinely available at the local district hospital. Methods The POCT was deployed in the outpatient and ante-natal departments of a district hospital and four rural health clinics served by the hospital. Each site was provided with training and an SOP on the performance, interpretation and recording of results. Treatment for those testing positive was provided, in line with Solomon Islands Ministry of Health and Medical Services’ guidelines for syphilis and yaws respectively. Alongside the implementation of the POCT we facilitated semi-structured interviews with both nurses and patients to explore individuals’ experiences and beliefs in relation to use of the POCT. Results and discussion Four main themes emerged in the interviews: 1) training and ease of performing the test; 2) time taken and ability to fit the test into a clinical workflow; 3) perceived reliability and trustworthiness of the test; and 4) level of the health care system the test was most usefully deployed. Many healthcare workers related their experience with the POCT to their experience using similar tests for malaria. Although the test was considered to take a relatively long time to perform the benefits of improved access to testing were considered positive by most healthcare workers. Qualitative data is needed to help inform better training packages to support the implementation of POCT in low-resource settings. PMID:29672524
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Marks, Michael; Esau, Tommy; Asugeni, Rowena; Harrington, Relmah; Diau, Jason; Toloka, Hilary; Asugeni, James; Ansbro, Eimhin; Solomon, Anthony W; Maclaren, David; Redman-Maclaren, Michelle; Mabey, David C W
2018-04-01
The human treponematoses comprise venereal syphilis and the three non-venereal or endemic treponematoses yaws, bejel, and pinta. Serological assays remain the most common diagnostic method for all treponemal infections. Point-of-care tests (POCTs) for syphilis and yaws allow testing without further development of infrastructure in populations where routine laboratory facilities are not available. Alongside the test's performance characteristics assessed through diagnostic evaluation, it is important to consider broader issues when rolling out a POCT. Experience with malaria POCT roll-out in sub-Saharan Africa has demonstrated that both healthcare worker and patient beliefs may play a major role in shaping the real-world use of POCTs. We conducted a qualitative study evaluating healthcare worker and patient perceptions of using a syphilis/yaws POCT in clinics in the East Malaita region of Malaita province in the Solomon Islands. Prior to the study serology was only routinely available at the local district hospital. The POCT was deployed in the outpatient and ante-natal departments of a district hospital and four rural health clinics served by the hospital. Each site was provided with training and an SOP on the performance, interpretation and recording of results. Treatment for those testing positive was provided, in line with Solomon Islands Ministry of Health and Medical Services' guidelines for syphilis and yaws respectively. Alongside the implementation of the POCT we facilitated semi-structured interviews with both nurses and patients to explore individuals' experiences and beliefs in relation to use of the POCT. Four main themes emerged in the interviews: 1) training and ease of performing the test; 2) time taken and ability to fit the test into a clinical workflow; 3) perceived reliability and trustworthiness of the test; and 4) level of the health care system the test was most usefully deployed. Many healthcare workers related their experience with the POCT to their experience using similar tests for malaria. Although the test was considered to take a relatively long time to perform the benefits of improved access to testing were considered positive by most healthcare workers. Qualitative data is needed to help inform better training packages to support the implementation of POCT in low-resource settings.
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NASA Astrophysics Data System (ADS)
Peterson, M. E.; Kelley, K. A.; Cottrell, E.; Saal, A. E.; Kurz, M. D.
2015-12-01
The oxidation state of the mantle plays an intrinsic role in the magmatic evolution of the Earth. Here we present new μ-XANES measurements of Fe3+/ΣFe ratios (a proxy for ƒO2) in a suite of submarine glasses from the Galapagos Archipelago. Using previously presented major, trace, and volatile elements and isotopic data for 4 groups of glass that come from distinct mantle sources (depleted upper mantle, 2 recycled, and a primitive mantle source) we show that Fe3+/ΣFe ratios vary both with the influence of shallow level processes and with variations in mantle source. Fe3+/ΣFe ratios increase with differentiation (i.e. decreasing MgO), but show a large variation at a given MgO. Progressive degassing of sulfur accompanies decreasing Fe3+/ΣFe ratios, while assimilation of hydrothermally altered crust (as indicated by increasing Sr/Sr*) is shown to increase Fe3+/ΣFe ratios. After taking these processes into account, there is still variability in the Fe3+/ΣFe ratios of the isotopically distinct sample suites studied, yielding a magmatic ƒO2 that ranges from ΔQFM = +0.16 to +0.74 (error < 0.5 log units) and showing that oxidation state varies as a function of mantle source composition in the Galapagos hotspot system. After correcting back to a common MgO content = 8.0 wt%, the trace element depleted group similar to MORB (ITD), and the group similar to Pinta (WD = high Th/La, Δ7/4, Δ8/4 ratios) show Fe3+/ΣFe ratios within the range of MORB (average ITD = 0.162 ± 0.003 and WD = 0.164 ± 0.006). Another trace element enriched group similar to Sierra Negra and Cerro Azul (ITE = enriched Sr and Pb isotopes) shows evidence of mixing between oxidized and reduced sources (ITE oxidized end-member = 0.177). This suggests that mantle sources in the Galapagos that are thought to contain recycled components (i.e., WD and ITE groups) have distinct oxidation states. The high 3He/4He Fernandina samples (HHe group) are shown to be the most oxidized (ave. 0.175 ± 0.006). With C/3He ratios an order of magnitude greater than MORB this suggests that the primitive mantle is a more carbonated and oxidized source than the depleted upper mantle.
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Kurz, M.D.; Geist, D.
The authors have measured the isotopes of He, Sr, Nd and Pb in a number of lava flows from the Galapagos Archipelago; the main goal is to use magmatic helium as a tracer of plume influence in the western volcanoes. Because the Galapagos lava flows are so well preserved, it is also possible to measure surface exposure ages using in situ cosmic-ray-produced {sup 3}He. The exposure ages range from {lt}0.1 to 580 Ka, are consistent with other chronological constrains, and provide the first direct dating of these lava flows. The new age data demonstrate the utility of the technique inmore » this important age range and show that the western Galapagos volcanoes have been erupting distance compositions simultaneously for the last {approximately}10 Ka. The magmatic {sup 3}He/{sup 4}He ratios range from 6.0 to 27 times atmospheric (R{sub a}), with the highest values found on the islands of Isabella (16.8 R{sub a} for Vulcan Sierra Negra) and Fernandina (23 to 27 R{sub a}). Values from Santa Cruz are close to typical mid-ocean ridge basalt values (MORB, of {approximately}9 R{sub 2}) and Pinta has a {sup 3}He/{sup 4}He ratio lower than MORB (6.9 R{sub a}). These data confirm that the plume is centered beneath Fernandina which is the most active volcano in the archipelago and is at the leading edge of plate motion. The data are consistent with previous isotopic studies, confirming extensive contributions from depleted asthenospheric or lithospheric mantle sources, especially to the central islands. The most striking aspect of the helium isotopic data is that the {sup 3}He/{sup 4}He ratios decrease systematically in all directions from Fernandina. This spatial variability is assumed to reflect the contribution of the purest plume component to Fernandina magmatism, and shows that helium is a sensitive indicator of plume influence. The highest {sup 3}He/{sup 4}He ratios are found in volcanoes with lowest Na{sub 2}O(8) and FeO(8), which may relate to source composition as well as degree and depth of melting. An excellent correlation is observed between {sup 3}He/{sup 4}He and Nb/La, suggesting that the Galapagos plume source is characterized by high concentrations of Nb (and Ta). The major and trace element correlations demonstrate that helium is controlled by silicate melting and source variations rather than degassing and/or metasomatic processes. Although lavas with radiogenic isotopic compositions tend to have higher {sup 3}He/{sup 4}He, the island-wide isotopic variability cannot be explained by simple two components mixing alone. The preferred model to explain the isotopic data includes a heterogeneous plume, centered at Fernandina, which undergoes polybaric melting, and spatial divergence and mixing with asthenospheric material at shallower depths. The unique regional pattern of the helium isotopic data suggests that helium is extracted more efficiently than other elements during the early stages of melting in the ascending plume.« less
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Picos de Europa National and Regional parks (Northern Spain): the karst underground landscape
NASA Astrophysics Data System (ADS)
Ballesteros, Daniel; Jiménez-Sánchez, Montserrat; Rodríguez-Rodríguez, Laura; José Domínguez-Cuesta, María; Meléndez-Asensio, Mónica; García-Sansegundo, Joaquín
2015-04-01
Karst caves represent an environmental with a high value from the Geoheritage and Geodiversity points of view given by hidden underground landscape practically reserved to the speleologists. Nevertheless, cave surveys, 3d models of caves and DEMs, and pictures can be used to approach the endokarst geoheritage characterization. The Picos de Europa National and Regional parks include the 14% of World's Deepest Caves (>1 km depth); moreover these parks shows a high environmental value related with seven protection figures: Biosphere Reserve, Special Protection Area, the Site of Community Importance, and four Natural Monument. The aim of this work is to present the Geoheritage values of the underground landscape of the Picos de Europa National and Regional parks. These parks involve several alpine karst massifs up to 700 km2 and 2,600 m asl, as the Picos de Europa mountains (declared Global Geosite by its geomorphological interest), the Mampodre Massif, and the Peñas Pintas and Yordas peaks (sited in Riaño dam area). The alpine karst involves a large underground landscape formed by more than 3,700 epigenic caves with 403 km of conduits. The 95 % of the cave conduits are located in the Picos de Europa mountains and correspond to caves up to 18.9 km length and 1.6 km depth; the 5 % of cave conduits are sited in other small karst areas and include caves up to 1.5 km length and 200 m depth. The karst caves present high natural, scientific and cultural values. The natural value corresponds to the singularity and the spectacular vertical development of the caves and a very high Geodiversity of cave features. The karst shows a high concentration of deep caves (81 caves deeper than 500 m) that is twice higher than the concentration of other karst areas, as Arabika Massif (Western Caucasus). The natural value is mainly related to the presence of geomorphological and hydrogeological features, highlighting high vadose canyons and shafts, old phreatic and epiphreatic conduits, few fluvial deposits, some speleothems (dripstone, flowstone), few ice caves, many underground streams, and karst springs. The scientific value corresponds to the cave records related to the regional evolution of the Cantabrian Range. The scientific studies evidence that the caves are originated prior to, at least, the Middle Pleistocene, in relation to mountain uplift, glaciations, fluvial incision, and the erosion of the alpine lithological seriesthat were above the karst. The cultural value is related with the specific uses of the cavities by shepherds and speleologists, and the singularity of cave names. The uses include traditional customs, as the livestock farming, the water collection, the elaboration of five types of cheese with Certificated of Origin, and sport uses by speleologists from many countries of Europe. The educative values are low due to the limitations of access inside the caves, although two caves are touristic and the entrance of some caves can be used to explain vadose shafts, relations between caves and glaciers and rivers or the underground water flow. GEOCAVE project (MAGRAMA-580/12 OAPN)
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Girty, George H.
1908-01-01
The first descriptions of the Guadalupian fauna were published nearly fifty years ago. This early account of Shumard's was meager enough, but gave promise of a facies interesting and novel among the known Carboniferous faunas of North America. The following pages add largely to our knowledge of Guadalupian life, and I believe more than make good any promise contained in the previous account. Nevertheless, even the collections of the Guadalupian fauna here described fail to do justice to its richness and diversity, and the present report is completed with the hope of returning to the subject after another visit to the Guadalupe Mountains. Although a description of this range and the adjacent region can be found elsewhere, a repetition of the more important facts will conduce to a better understanding of the geologic relations of the fauna described herein and will serve to illustrate the references to localities and horizons necessarily involved in the paleontologic discussion. The Guadalupe Mountains are situated chiefly in southeastern New Mexico, but extend across the border for a short distance into the trans-Pecos region of Texas. Save only for this southern extreme both their geology and their topography are practically unknown, and it should be understood that anything hereafter said of them relates only to that portion. These mountains form a north-south range of considerable height, which rises abruptly from an arid and treeless plain, stretching westward to more mountainous elevations, the Cornudas Mountains and the Sierra Tinaja Pinta. This plain is locally known as Crow Flats and forms a part of the Salt Basin (Pl. I). It is now used as cattle ranges, water being raised by windmills. The only permanent surface water consists of salt lakes - broad, shallow pools incrusted with saline deposits, which in the early days were extensively sought for domestic use. This water is of course unfit for consumption, but cattle seem as a rule not to mind the less highly impregnated waters brought up by the pumps. These vary considerably in the amount and character of their saline contents, but even the best is unsatisfactory for human use. On the east side, from the foot of the mountains the land slopes gradually eastward and merges with the plains of Texas. There are springs of sweet water and perennial streams on this side of the range, such streams being in this region, as a rule, associated only with the highest mountains. Usually the canyons and sandy channels serve merely to carry off the occasional torrential rains, and this is the case for the most part even with the perennial streams, which almost immediately on striking into the plain are drunk up by the soil. Beyond their debouchure from the mountains their course is merely a dry sandy channel. There are, however, flowing streams east of the Guadalupes, one such being Delaware River. In seasons of rain this watercourse is formed by the confluence of numerous small tributaries - some leading back into the mountains - which pour their sudden waters through channels usually dry; but the source of the perennial stream seems to be a very definite point situated some distance east of the Guadalupes and generally referred to as the 'headwaters of the Delaware.' This expression would naturally be taken to have a more general significance, but Shumard uses it, I believe, in this local sense, and as it is often difficult to fix references to local geography it seems desirable to make the present record of the fact. At this point, which is also known as Huhling's ranch, three springs, one of them strongly charged with sulphur, break out close together in the bed of the Delaware, which below this point is a permanent watercourse. The Guadalupe Mountains are formed by uplifted strata, consisting of a thick limestone series above and a thick sandstone series below. The abrupt termination of the limestone in an almost sheer precipice of practically its entire thickness