Nano Mapper: an Internet knowledge mapping system for nanotechnology development

PubMed Central

Hu, Daning; Dang, Yan; Chen, Hsinchun; Roco, Mihail C.; Larson, Catherine A.; Chan, Joyce

2008-01-01

Nanotechnology research has experienced rapid growth in recent years. Advances in information technology enable efficient investigation of publications, their contents, and relationships for large sets of nanotechnology-related documents in order to assess the status of the field. This paper presents the development of a new knowledge mapping system, called Nano Mapper (http://nanomapper.eller.arizona.edu), which integrates the analysis of nanotechnology patents and research grants into a Web-based platform. The Nano Mapper system currently contains nanotechnology-related patents for 1976–2006 from the United States Patent and Trademark Office (USPTO), European Patent Office (EPO), and Japan Patent Office (JPO), as well as grant documents from the U.S. National Science Foundation (NSF) for the same time period. The system provides complex search functionalities, and makes available a set of analysis and visualization tools (statistics, trend graphs, citation networks, and content maps) that can be applied to different levels of analytical units (countries, institutions, technical fields) and for different time intervals. The paper shows important nanotechnology patenting activities at USPTO for 2005–2006 identified through the Nano Mapper system. PMID:21170121

Summary of current radiometric calibration coefficients for Landsat MSS, TM, ETM+, and EO-1 ALI sensors

USGS Publications Warehouse

Chander, G.; Markham, B.L.; Helder, D.L.

2009-01-01

This paper provides a summary of the current equations and rescaling factors for converting calibrated Digital Numbers (DNs) to absolute units of at-sensor spectral radiance, Top-Of-Atmosphere (TOA) reflectance, and at-sensor brightness temperature. It tabulates the necessary constants for the Multispectral Scanner (MSS), Thematic Mapper (TM), Enhanced Thematic Mapper Plus (ETM+), and Advanced Land Imager (ALI) sensors. These conversions provide a basis for standardized comparison of data in a single scene or between images acquired on different dates or by different sensors. This paper forms a needed guide for Landsat data users who now have access to the entire Landsat archive at no cost.

Summary of Current Radiometric Calibration Coefficients for Landsat MSS, TM, ETM+, and EO-1 ALI Sensors

NASA Technical Reports Server (NTRS)

Chander, Gyanesh; Markham, Brian L.; Helder, Dennis L.

2009-01-01

This paper provides a summary of the current equations and rescaling factors for converting calibrated Digital Numbers (DNs) to absolute units of at-sensor spectral radiance, Top-Of- Atmosphere (TOA) reflectance, and at-sensor brightness temperature. It tabulates the necessary constants for the Multispectral Scanner (MSS), Thematic Mapper (TM), Enhanced Thematic Mapper Plus (ETM+), and Advanced Land Imager (ALI) sensors. These conversions provide a basis for standardized comparison of data in a single scene or between images acquired on different dates or by different sensors. This paper forms a needed guide for Landsat data users who now have access to the entire Landsat archive at no cost.

Turning Noise into Signal: Utilizing Impressed Pipeline Currents for EM Exploration

NASA Astrophysics Data System (ADS)

Lindau, Tobias; Becken, Michael

2017-04-01

Impressed Current Cathodic Protection (ICCP) systems are extensively used for the protection of central Europe's dense network of oil-, gas- and water pipelines against destruction by electrochemical corrosion. While ICCP systems usually provide protection by injecting a DC current into the pipeline, mandatory pipeline integrity surveys demand a periodical switching of the current. Consequently, the resulting time varying pipe currents induce secondary electric- and magnetic fields in the surrounding earth. While these fields are usually considered to be unwanted cultural noise in electromagnetic exploration, this work aims at utilizing the fields generated by the ICCP system for determining the electrical resistivity of the subsurface. The fundamental period of the switching cycles typically amounts to 15 seconds in Germany and thereby roughly corresponds to periods used in controlled source EM applications (CSEM). For detailed studies we chose an approximately 30km long pipeline segment near Herford, Germany as a test site. The segment is located close to the southern margin of the Lower Saxony Basin (LSB) and part of a larger gas pipeline composed of multiple segments. The current injected into the pipeline segment originates in a rectified 50Hz AC signal which is periodically switched on and off. In contrast to the usual dipole sources used in CSEM surveys, the current distribution along the pipeline is unknown and expected to be non-uniform due to coating defects that cause current to leak into the surrounding soil. However, an accurate current distribution is needed to model the fields generated by the pipeline source. We measured the magnetic fields at several locations above the pipeline and used Biot-Savarts-Law to estimate the currents decay function. The resulting frequency dependent current distribution shows a current decay away from the injection point as well as a frequency dependent phase shift which is increasing with distance from the injection point. Electric field data were recorded at 45 stations located in an area of about 60 square kilometers in the vicinity to the pipeline. Additionally, the injected source current was recorded directly at the injection point. Transfer functions between the local electric fields and the injected source current are estimated for frequencies ranging from 0.03Hz to 15Hz using robust time series processing techniques. The resulting transfer functions are inverted for a 3D conductivity model of the subsurface using an elaborate pipeline model. We interpret the model with regards to the local geologic setting, demonstrating the methods capabilities to image the subsurface.

Eyesafe laser cloud mapper

NASA Astrophysics Data System (ADS)

Woodall, Milton A., II; Minch, J. R.; Nunez, J.; Keeter, Howard S.; Johnson, Anthony M.

1990-07-01

The performance of eyesafe erbium:glass lasers operating at a wavelength of 1. 54 urn has been tested under various natural and manmade obscurants. To obtain the maximum amount of information two distinct system configurations were employed. The first a laser cloud mapper was designed to provide a direct depth profile of smoke density and reflectivity as well as target position. The second configuration was a production military laser rangefinder. It is representative of systems currently incorporated in tactical armored vehicles and was used to provide a direct indication of target range. 1.

The ALMA Science Pipeline: Current Status

NASA Astrophysics Data System (ADS)

Humphreys, Elizabeth; Miura, Rie; Brogan, Crystal L.; Hibbard, John; Hunter, Todd R.; Indebetouw, Remy

2016-09-01

The ALMA Science Pipeline is being developed for the automated calibration and imaging of ALMA interferometric and single-dish data. The calibration Pipeline for interferometric data was accepted for use by ALMA Science Operations in 2014, and for single-dish data end-to-end processing in 2015. However, work is ongoing to expand the use cases for which the Pipeline can be used e.g. for higher frequency and lower signal-to-noise datasets, and for new observing modes. A current focus includes the commissioning of science target imaging for interferometric data. For the Single Dish Pipeline, the line finding algorithm used in baseline subtraction and baseline flagging heuristics have been greately improved since the prototype used for data from the previous cycle. These algorithms, unique to the Pipeline, produce better results than standard manual processing in many cases. In this poster, we report on the current status of the Pipeline capabilities, present initial results from the Imaging Pipeline, and the smart line finding and flagging algorithm used in the Single Dish Pipeline. The Pipeline is released as part of CASA (the Common Astronomy Software Applications package).

On-board multispectral classification study

NASA Technical Reports Server (NTRS)

Ewalt, D.

1979-01-01

The factors relating to onboard multispectral classification were investigated. The functions implemented in ground-based processing systems for current Earth observation sensors were reviewed. The Multispectral Scanner, Thematic Mapper, Return Beam Vidicon, and Heat Capacity Mapper were studied. The concept of classification was reviewed and extended from the ground-based image processing functions to an onboard system capable of multispectral classification. Eight different onboard configurations, each with varying amounts of ground-spacecraft interaction, were evaluated. Each configuration was evaluated in terms of turnaround time, onboard processing and storage requirements, geometric and classification accuracy, onboard complexity, and ancillary data required from the ground.

Comparison of existing digital image analysis systems for the analysis of Thematic Mapper data

NASA Technical Reports Server (NTRS)

Likens, W. C.; Wrigley, R. C.

1984-01-01

Most existing image analysis systems were designed with the Landsat Multi-Spectral Scanner in mind, leaving open the question of whether or not these systems could adequately process Thematic Mapper data. In this report, both hardware and software systems have been evaluated for compatibility with TM data. Lack of spectral analysis capability was not found to be a problem, though techniques for spatial filtering and texture varied. Computer processing speed and data storage of currently existing mini-computer based systems may be less than adequate. Upgrading to more powerful hardware may be required for many TM applications.

Radiometric calibration of the reflective bands of NS001-Thematic Mapper Simulator (TMS) and modular multispectral radiometers (MMR)

NASA Technical Reports Server (NTRS)

Markham, Brian L.; Wood, Frank M., Jr.; Ahmad, Suraiya P.

1988-01-01

The NS001 Thematic Mapper Simulator scanner (TMS) and several modular multispectral radiometers (MMRs) are among the primary instruments used in the First ISLSCP (International Satellite Land Surface Climatology Project) Field Experiment (FIFE). The NS001 has a continuously variable gain setting. Calibration of the NS001 data is influenced by drift in the dark current level of up to six counts during a mirror scan at typical gain settings. The MMR instruments are being used in their 1 deg FOV configuration on the helicopter and 15 deg FOV on the ground.

Experimental and Numerical Investigation of Local Scour Around Submarine Piggyback Pipeline Under Steady Current

NASA Astrophysics Data System (ADS)

Zhao, Enjin; Shi, Bing; Qu, Ke; Dong, Wenbin; Zhang, Jing

2018-04-01

As a new type of submarine pipeline, the piggyback pipeline has been gradually adopted in engineering practice to enhance the performance and safety of submarine pipelines. However, limited simulation work and few experimental studies have been published on the scour around the piggyback pipeline under steady current. This study numerically and experimentally investigates the local scour of the piggyback pipe under steady current. The influence of prominent factors such as pipe diameter, inflow Reynolds number, and gap between the main and small pipes, on the maximum scour depth have been examined and discussed in detail. Furthermore, one formula to predict the maximum scour depth under the piggyback pipeline has been derived based on the theoretical analysis of scour equilibrium. The feasibility of the proposed formula has been effectively calibrated by both experimental data and numerical results. The findings drawn from this study are instructive in the future design and application of the piggyback pipeline.

ALMA Pipeline: Current Status

NASA Astrophysics Data System (ADS)

Shinnaga, H.; Humphreys, E.; Indebetouw, R.; Villard, E.; Kern, J.; Davis, L.; Miura, R. E.; Nakazato, T.; Sugimoto, K.; Kosugi, G.; Akiyama, E.; Muders, D.; Wyrowski, F.; Williams, S.; Lightfoot, J.; Kent, B.; Momjian, E.; Hunter, T.; ALMA Pipeline Team

2015-12-01

The ALMA Pipeline is the automated data reduction tool that runs on ALMA data. Current version of the ALMA pipeline produces science quality data products for standard interferometric observing modes up to calibration process. The ALMA Pipeline is comprised of (1) heuristics in the form of Python scripts that select the best processing parameters, and (2) contexts that are given for book-keeping purpose of data processes. The ALMA Pipeline produces a "weblog" that showcases detailed plots for users to judge how each step of calibration processes are treated. The ALMA Interferometric Pipeline was conditionally accepted in March 2014 by processing Cycle 0 and Cycle 1 data sets. From Cycle 2, ALMA Pipeline is used for ALMA data reduction and quality assurance for the projects whose observing modes are supported by the ALMA Pipeline. Pipeline tasks are available based on CASA version 4.2.2, and the first public pipeline release called CASA 4.2.2-pipe has been available since October 2014. One can reduce ALMA data both by CASA tasks as well as by pipeline tasks by using CASA version 4.2.2-pipe.

Nasa's Planetary Geologic Mapping Program: Overview

NASA Astrophysics Data System (ADS)

Williams, D. A.

2016-06-01

NASA's Planetary Science Division supports the geologic mapping of planetary surfaces through a distinct organizational structure and a series of research and analysis (R&A) funding programs. Cartography and geologic mapping issues for NASA's planetary science programs are overseen by the Mapping and Planetary Spatial Infrastructure Team (MAPSIT), which is an assessment group for cartography similar to the Mars Exploration Program Assessment Group (MEPAG) for Mars exploration. MAPSIT's Steering Committee includes specialists in geological mapping, who make up the Geologic Mapping Subcommittee (GEMS). I am the GEMS Chair, and with a group of 3-4 community mappers we advise the U.S. Geological Survey Planetary Geologic Mapping Coordinator (Dr. James Skinner) and develop policy and procedures to aid the planetary geologic mapping community. GEMS meets twice a year, at the Annual Lunar and Planetary Science Conference in March, and at the Annual Planetary Mappers' Meeting in June (attendance is required by all NASA-funded geologic mappers). Funding programs under NASA's current R&A structure to propose geological mapping projects include Mars Data Analysis (Mars), Lunar Data Analysis (Moon), Discovery Data Analysis (Mercury, Vesta, Ceres), Cassini Data Analysis (Saturn moons), Solar System Workings (Venus or Jupiter moons), and the Planetary Data Archiving, Restoration, and Tools (PDART) program. Current NASA policy requires all funded geologic mapping projects to be done digitally using Geographic Information Systems (GIS) software. In this presentation we will discuss details on how geologic mapping is done consistent with current NASA policy and USGS guidelines.

NOBLE - Flexible concept recognition for large-scale biomedical natural language processing.

PubMed

Tseytlin, Eugene; Mitchell, Kevin; Legowski, Elizabeth; Corrigan, Julia; Chavan, Girish; Jacobson, Rebecca S

2016-01-14

Natural language processing (NLP) applications are increasingly important in biomedical data analysis, knowledge engineering, and decision support. Concept recognition is an important component task for NLP pipelines, and can be either general-purpose or domain-specific. We describe a novel, flexible, and general-purpose concept recognition component for NLP pipelines, and compare its speed and accuracy against five commonly used alternatives on both a biological and clinical corpus. NOBLE Coder implements a general algorithm for matching terms to concepts from an arbitrary vocabulary set. The system's matching options can be configured individually or in combination to yield specific system behavior for a variety of NLP tasks. The software is open source, freely available, and easily integrated into UIMA or GATE. We benchmarked speed and accuracy of the system against the CRAFT and ShARe corpora as reference standards and compared it to MMTx, MGrep, Concept Mapper, cTAKES Dictionary Lookup Annotator, and cTAKES Fast Dictionary Lookup Annotator. We describe key advantages of the NOBLE Coder system and associated tools, including its greedy algorithm, configurable matching strategies, and multiple terminology input formats. These features provide unique functionality when compared with existing alternatives, including state-of-the-art systems. On two benchmarking tasks, NOBLE's performance exceeded commonly used alternatives, performing almost as well as the most advanced systems. Error analysis revealed differences in error profiles among systems. NOBLE Coder is comparable to other widely used concept recognition systems in terms of accuracy and speed. Advantages of NOBLE Coder include its interactive terminology builder tool, ease of configuration, and adaptability to various domains and tasks. NOBLE provides a term-to-concept matching system suitable for general concept recognition in biomedical NLP pipelines.

Airborne LIDAR Pipeline Inspection System (ALPIS) Mapping Tests

DOT National Transportation Integrated Search

2003-06-06

Natural gas and hazardous liquid pipeline operators have a need to identify where leaks are occurring along their pipelines in order to lower the risks the pipelines pose to people and the environment. Current methods of locating natural gas and haza...

Induced electric currents in the Alaska oil pipeline measured by gradient, fluxgate, and SQUID magnetometers

NASA Technical Reports Server (NTRS)

Campbell, W. H.; Zimmerman, J. E.

1979-01-01

The field gradient method for observing the electric currents in the Alaska pipeline provided consistent values for both the fluxgate and SQUID method of observation. These currents were linearly related to the regularly measured electric and magnetic field changes. Determinations of pipeline current were consistent with values obtained by a direct connection, current shunt technique at a pipeline site about 9.6 km away. The gradient method has the distinct advantage of portability and buried- pipe capability. Field gradients due to the pipe magnetization, geological features, or ionospheric source currents do not seem to contribute a measurable error to such pipe current determination. The SQUID gradiometer is inherently sensitive enough to detect very small currents in a linear conductor at 10 meters, or conversely, to detect small currents of one amphere or more at relatively great distances. It is fairly straightforward to achieve imbalance less than one part in ten thousand, and with extreme care, one part in one million or better.

Abstracts of the annual meeting of Planetary Geologic Mappers: June 21-22, 2002, Tempe, Arizona

USGS Publications Warehouse

Gregg, Tracy K. P.; Tanaka, Kenneth L.; Senske, David A.

2002-01-01

The annual meeting of planetary geologic mappers allows mappers the opportunity to exchange ideas, experiences, victories, and problems. In addition, presentations are reviewed by the Geologic Mapping Subcommittee (GEMS) to provide input to the Planetary Geology and Geophysics Mapping Program review panel’s consideration of new proposals and progress reports that include mapping tasks. Funded mappers bring both oral presentation materials (slides or viewgraphs) and map products to post for review by GEMS and fellow mappers. Additionally, the annual meetings typically feature optional field trips that offer Earth analogs and parallels to planetary mapping problems or workshops that provide information and status of current missions. The 2002 meeting of planetary geologic mappers was held June 21-22 at the Mars Flight Facility, Arizona State University, Tempe, Arizona. Dr. Phil Christensen graciously offered the use of the newly renovated facility, and Ms. Kelly Bender not only proved to be a courteous hostess, but also arranged a short workshop on June 23 regarding TES and THEMIS data. Approximately 30 people attended each day of the 2-day meeting, although not the same 30—some attended only on Thursday and others only on Friday. On Thursday, eight mappers gave oral presentations of Mars mapping, and an additional two presentations were presented as posters only. Eight oral presentations on Venus mapping were given on Friday, and an additional four presentations were posters only. Twelve people attended the TES/THEMIS workshop. Presentations of Ganymede mapping and Europa mapping (the latter not yet financially sponsored by PG&G mapping program) were also given on Friday. Aside from the regular presentations of maps-in-progress, there were some additional talks. Lisa Gaddis (USGS) presented a proposal seeking support for a new lunar mapping program in light of all the new data available; she made a good case that the GEMS panel discussed. Jim Skinner (USGS) gave a short presentation on free (or nearly so) software available for 3D viewing of planetary surfaces. Healthy discussions focused on the review time for some maps and the use of different styles of correlation charts observed on the presented maps. Next year’s meeting will be held June 19-20 at Brown University, Providence, RI.

77 FR 48112 - Pipeline Safety: Administrative Procedures; Updates and Technical Corrections

Federal Register 2010, 2011, 2012, 2013, 2014

2012-08-13

...This Notice of Proposed Rulemaking updates the administrative civil penalty maximums for violation of the pipeline safety regulations to conform to current law, updates the informal hearing and adjudication process for pipeline enforcement matters to conform to current law, amends other administrative procedures used by PHMSA personnel, and makes other technical corrections and updates to certain administrative procedures. The proposed amendments do not impose any new operating, maintenance, or other substantive requirements on pipeline owners or operators.

Application of Remote-Field Eddy Current Testing to Inspection of Unpiggable Pipelines

DOT National Transportation Integrated Search

2003-07-02

Corrosion of buried pipelines can lead to catastrophic failure. Many pipelines are successfully inspected by magnetic flux leakage (MFL) pigs to detect corrosion. However, there is a subset of pipelines for which MFL is not feasible. To inspect those...

75 FR 48593 - Pipeline Safety: Periodic Updates of Regulatory References to Technical Standards and...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-08-11

... DEPARTMENT OF TRANSPORTATION Pipeline and Hazardous Materials Safety Administration 49 CFR Parts... AGENCY: Pipeline and Hazardous Materials Safety Administration (PHMSA), Department of Transportation (DOT... action allows pipeline operators to use current technologies, improved materials, and updated industry...

49 CFR 195.12 - What requirements apply to low-stress pipelines in rural areas?

Code of Federal Regulations, 2010 CFR

2010-10-01

... 49 Transportation 3 2010-10-01 2010-10-01 false What requirements apply to low-stress pipelines in... low-stress pipelines in rural areas? (a) General. This section does not apply to a rural low-stress pipeline regulated under this part as a low-stress pipeline that crosses a waterway currently used for...

Opening the Landsat Archive

USGS Publications Warehouse

,

2008-01-01

The USGS Landsat archive holds an unequaled 36-year record of the Earth's surface that is invaluable to climate change studies, forest and resource management activities, and emergency response operations. An aggressive effort is taking place to provide all Landsat imagery [scenes currently held in the USGS Earth Resources Observation and Science (EROS) Center archive, as well as newly acquired scenes daily] free of charge to users with electronic access via the Web by the end of December 2008. The entire Landsat 7 Enhanced Thematic Mapper Plus (ETM+) archive acquired since 1999 and any newly acquired Landsat 7 ETM+ images that have less than 40 percent cloud cover are currently available for download. When this endeavor is complete all Landsat 1-5 data will also be available for download. This includes Landsat 1-5 Multispectral Scanner (MSS) scenes, as well as Landsat 4 and 5 Thematic Mapper (TM) scenes.

78 FR 26057 - Extension of Agency Information Collection Activity Under OMB Review: Pipeline Corporate Security...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-05-03

... Information Collection Activity Under OMB Review: Pipeline Corporate Security Review AGENCY: Transportation.... Information Collection Requirement Title: Pipeline Corporate Security Review (PCSR). Type of Request... current industry security practices through its Pipeline Corporate Security Review (PCSR) program. The...

Landslide and Land Subsidence Hazards to Pipelines

USGS Publications Warehouse

Baum, Rex L.; Galloway, Devin L.; Harp, Edwin L.

2008-01-01

Landslides and land subsidence pose serious hazards to pipelines throughout the world. Many existing pipeline corridors and more and more new pipelines cross terrain that is affected by either landslides, land subsidence, or both. Consequently the pipeline industry recognizes a need for increased awareness of methods for identifying and evaluating landslide and subsidence hazard for pipeline corridors. This report was prepared in cooperation with the U.S. Department of Transportation Pipeline and Hazardous Materials Safety Administration, and Pipeline Research Council International through a cooperative research and development agreement (CRADA) with DGH Consulting, Inc., to address the need for up-to-date information about current methods to identify and assess these hazards. Chapters in this report (1) describe methods for evaluating landslide hazard on a regional basis, (2) describe the various types of land subsidence hazard in the United States and available methods for identifying and quantifying subsidence, and (3) summarize current methods for investigating individual landslides. In addition to the descriptions, this report provides information about the relative costs, limitations and reliability of various methods.

An Aperture Photometry Pipeline for K2 Data

NASA Astrophysics Data System (ADS)

Buzasi, Derek L.; Carboneau, Lindsey; Lezcano, Andy; Vydra, Ekaterina

2016-01-01

As part of an ongoing research program with undergraduate students at Florida Gulf Coast University, we have constructed an aperture photometry pipeline for K2 data. The pipeline performs dynamic automated aperture mask definition for all targets in the K2 fields, followed by aperture photometry and detrending. Our pipeline is currently used to support a number of projects, including studies of stellar rotation and activity, red giant asteroseismology, gyrochronology, and exoplanet searches. In addition, output is used to support an undergraduate class on exoplanets aimed at a student audience of both majors and non-majors. The pipeline is designed for both batch and single-target use, and is easily extensible to data from other missions, and pipeline output is available to the community. This paper will describe our pipeline and its capabilities and illustrate the quality of the results, drawing on all of the applications for which it is currently used.

Internet protocol network mapper

DOEpatents

Youd, David W.; Colon III, Domingo R.; Seidl, Edward T.

2016-02-23

A network mapper for performing tasks on targets is provided. The mapper generates a map of a network that specifies the overall configuration of the network. The mapper inputs a procedure that defines how the network is to be mapped. The procedure specifies what, when, and in what order the tasks are to be performed. Each task specifies processing that is to be performed for a target to produce results. The procedure may also specify input parameters for a task. The mapper inputs initial targets that specify a range of network addresses to be mapped. The mapper maps the network by, for each target, executing the procedure to perform the tasks on the target. The results of the tasks represent the mapping of the network defined by the initial targets.

DGEM--a microarray gene expression database for primary human disease tissues.

PubMed

Xia, Yuni; Campen, Andrew; Rigsby, Dan; Guo, Ying; Feng, Xingdong; Su, Eric W; Palakal, Mathew; Li, Shuyu

2007-01-01

Gene expression patterns can reflect gene regulations in human tissues under normal or pathologic conditions. Gene expression profiling data from studies of primary human disease samples are particularly valuable since these studies often span many years in order to collect patient clinical information and achieve a large sample size. Disease-to-Gene Expression Mapper (DGEM) provides a beneficial community resource to access and analyze these data; it currently includes Affymetrix oligonucleotide array datasets for more than 40 human diseases and 1400 samples. The data are normalized to the same scale and stored in a relational database. A statistical-analysis pipeline was implemented to identify genes abnormally expressed in disease tissues or genes whose expressions are associated with clinical parameters such as cancer patient survival. Data-mining results can be queried through a web-based interface at http://dgem.dhcp.iupui.edu/. The query tool enables dynamic generation of graphs and tables that are further linked to major gene and pathway resources that connect the data to relevant biology, including Entrez Gene and Kyoto Encyclopedia of Genes and Genomes (KEGG). In summary, DGEM provides scientists and physicians a valuable tool to study disease mechanisms, to discover potential disease biomarkers for diagnosis and prognosis, and to identify novel gene targets for drug discovery. The source code is freely available for non-profit use, on request to the authors.

The Snow Data System at NASA JPL

NASA Astrophysics Data System (ADS)

Laidlaw, R.; Painter, T. H.; Mattmann, C. A.; Ramirez, P.; Brodzik, M. J.; Rittger, K.; Bormann, K. J.; Burgess, A. B.; Zimdars, P.; McGibbney, L. J.; Goodale, C. E.; Joyce, M.

2015-12-01

The Snow Data System at NASA JPL includes a data processing pipeline built with open source software, Apache 'Object Oriented Data Technology' (OODT). It produces a variety of data products using inputs from satellites such as MODIS, VIIRS and Landsat. Processing is carried out in parallel across a high-powered computing cluster. Algorithms such as 'Snow Covered Area and Grain-size' (SCAG) and 'Dust Radiative Forcing in Snow' (DRFS) are applied to satellite inputs to produce output images that are used by many scientists and institutions around the world. This poster will describe the Snow Data System, its outputs and their uses and applications, along with recent advancements to the system and plans for the future. Advancements for 2015 include automated daily processing of historic MODIS data for SCAG (MODSCAG) and DRFS (MODDRFS), automation of SCAG processing for VIIRS satellite inputs (VIIRSCAG) and an updated version of SCAG for Landsat Thematic Mapper inputs (TMSCAG) that takes advantage of Graphics Processing Units (GPUs) for faster processing speeds. The pipeline has been upgraded to use the latest version of OODT and its workflows have been streamlined to enable computer operators to process data on demand. Additional products have been added, such as rolling 8-day composites of MODSCAG data, a new version of the MODSCAG 'annual minimum ice and snow extent' (MODICE) product, and recoded MODSCAG data for the 'Satellite Snow Product Intercomparison and Evaluation Experiment' (SnowPEx) project.

An interpretation of induced electric currents in long pipelines caused by natural geomagnetic sources of the upper atmosphere

USGS Publications Warehouse

Campbell, W.H.

1986-01-01

Electric currents in long pipelines can contribute to corrosion effects that limit the pipe's lifetime. One cause of such electric currents is the geomagnetic field variations that have sources in the Earth's upper atmosphere. Knowledge of the general behavior of the sources allows a prediction of the occurrence times, favorable locations for the pipeline effects, and long-term projections of corrosion contributions. The source spectral characteristics, the Earth's conductivity profile, and a corrosion-frequency dependence limit the period range of the natural field changes that affect the pipe. The corrosion contribution by induced currents from geomagnetic sources should be evaluated for pipelines that are located at high and at equatorial latitudes. At midlatitude locations, the times of these natural current maxima should be avoided for the necessary accurate monitoring of the pipe-to-soil potential. ?? 1986 D. Reidel Publishing Company.

77 FR 65508 - Annual Charge Filing Procedures for Natural Gas Pipelines

Federal Register 2010, 2011, 2012, 2013, 2014

2012-10-29

...] Annual Charge Filing Procedures for Natural Gas Pipelines AGENCY: Federal Energy Regulatory Commission... FERC) is proposing to amend its regulations to revise the filing requirements for natural gas pipelines...) clause. Currently, natural gas pipelines utilizing an ACA clause must make a tariff filing to reflect a...

Telluric currents: A meeting of theory and observation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Boteler, D.H.; Seager, W.H.

Pipe-to-soil (P/S) potential variations resulting from telluric currents have been observed on pipelines in many locations. However, it has never teen clear which parts of a pipeline will experience the worst effects. Two studies were conducted to answer this question. Distributed-source transmission line (DSTL) theory was applied to the problem of modeling geomagnetic induction in pipelines. This theory predicted that the largest P/S potential variations would occur at the ends of the pipeline. The theory also predicted that large P/S potential variations, of opposite sign, should occur on either side of an insulating flange. Independently, an observation program was conductedmore » to determine the change in telluric current P/S potential variations and to design counteractive measures along a pipeline in northern Canada. Observations showed that the amplitude of P/S potential fluctuations had maxima at the northern and southern ends of the pipeline. A further set of recordings around an insulating flange showed large P/S potential variations, of opposite sign, on either side of the flange. Agreement between the observations and theoretical predictions was remarkable. While the observations confirmed the theory, the theory explains how P/S potential variations are produced by telluric currents and provides the basis for design of cathodic protection systems for pipelines that can counteract any adverse telluric effects.« less

Status of Natural Gas Pipeline System Capacity Entering the 2000-2001 Heating Season

EIA Publications

2000-01-01

This special report looks at the capabilities of the national natural gas pipeline network in 2000 and provides an assessment of the current levels of available capacity to transport supplies from production areas to markets throughout the United States during the upcoming heating season. It also examines how completion of currently planned expansion projects and proposed new pipelines would affect the network.

NS001MS - Landsat-D thematic mapper band aircraft scanner

NASA Technical Reports Server (NTRS)

Richard, R. R.; Merkel, R. F.; Meeks, G. R.

1978-01-01

The thematic mapper is a multispectral scanner which will be launched aboard Landsat-D in the early 1980s. Compared with previous Landsat scanners, this instrument will have an improved spatial resolution (30 m) and new spectral bands. Designated NS001MS, the scanner is designed to duplicate the thematic mapper spectral bands plus two additional bands (1.0 to 1.3 microns and 2.08 to 2.35 microns) in an aircraft scanner for evaluation and investigation prior to design and launch of the final thematic mapper. Applicable specifications used in defining the thematic mapper were retained in the NS001MS design, primarily with respect to spectral bandwidths, noise equivalent reflectance, and noise equivalent difference temperature. The technical design and operational characteristics of the multispectral scanner (with thematic mapper bands) are discussed.

Electrical voltages and resistances measured to inspect metallic cased wells and pipelines

DOEpatents

Vail, III, William Banning; Momii, Steven Thomas

2001-01-01

A cased well in the earth is electrically energized with A.C. current. Voltages are measured from three voltage measurement electrodes in electrical contact with the interior of the casing while the casing is electrically energized. In a measurement mode, A.C. current is conducted from a first current carrying electrode within the cased well to a remote second current carrying electrode located on the surface of the earth. In a calibration mode, current is passed from the first current carrying electrode to a third current carrying electrode located vertically at a different position within the cased well, where the three voltage measurement electrodes are located vertically in between the first and third current carrying electrodes. Voltages along the casing and resistances along the casing are measured to determine wall thickness and the location of any casing collars present so as to electrically inspect the casing. Similar methods are employed to energize a pipeline to measure the wall thickness of the pipeline and the location of pipe joints to electrically inspect the pipeline.

Electrical voltages and resistances measured to inspect metallic cased wells and pipelines

DOEpatents

Vail III, William Banning; Momii, Steven Thomas

2003-06-10

A cased well in the earth is electrically energized with A.C. current. Voltages are measured from three voltage measurement electrodes in electrical contact with the interior of the casing while the casing is electrically energized. In a measurement mode, A.C. current is conducted from a first current carrying electrode within the cased well to a remote second current carrying electrode located on the surface of the earth. In a calibration mode, current is passed from the first current carrying electrode to a third current carrying electrode located vertically at a different position within the cased well, where the three voltage measurement electrodes are located vertically in between the first and third current carrying electrodes. Voltages along the casing and resistances along the casing are measured to determine wall thickness and the location of any casing collars present so as to electrically inspect the casing. Similar methods are employed to energize a pipeline to measure the wall thickness of the pipeline and the location of pipe joints to electrically inspect the pipeline.

Induction of auroral zone electric currents within the Alaska pipeline

USGS Publications Warehouse

Campbell, W.H.

1978-01-01

The Alaskar pipeline is a highly conducting anomaly extending 800 miles (1300 km) from about 62?? to 69?? geomagnetic latitude beneath the most active regions of the ionospheric electrojet current. The spectral behavior of the magnetic field from this current was analyzed using data from standard geomagnetic observatories to establish the predictable patterns of temporal and spatial changes for field pulsation periods between 5 min and 4 hr. Such behavior is presented in a series of tables, graphs and formulae. Using 2- and 3-layer models of the conducting earth, the induced electric fields associated with the geomagnetic changes were established. From the direct relationship of the current to the geomagnetic field variation patterns one can infer counterpart temporal and spatial characteristics of the pipeline current. The relationship of the field amplitudes to geomagnetic activity indices, Ap, and the established occurrence of various levels of Ap over several solar cycles were employed to show that about half of the time the induced currents in the pipe would be under 1 A for the maximum response oscillatory periods near 1 hr. Such currents should be of minimal consequence in corrosion effects for even a section of the pipeline unprotected by sacrificial electrodes. Of greater interest was the result that the extreme surges of current should reach over one-hundred amperes in the pipeline during high activity. ?? 1978 Birkha??user Verlag.

A comparison of four different lens mappers.

PubMed

Larrue, Denis; Legeard, Morgane

2014-11-01

Recently, a number of lens mappers have become available for measuring the detailed optical properties of progressive addition lenses (PALs). The goal of this study was to compare the results obtained from several different lens mappers for a range of different lenses. The optical power maps of six lenses-two single-vision lenses, a parallel-sided slide, a flat prism, and two progressive lenses-were measured using four different lens mappers: the Dual Lens Mapper, the Nimo TR4005, the Rotlex Class Plus, and the Visionix VM2500. The repeatability of the instruments was also evaluated. All lens mappers gave very repeatable measurements; however, measurements among the lens mappers varied considerably. Differences appeared to be above the tolerance at the optical center for measurements of single-vision lenses, and these differences increase in the periphery up to 1.00 diopter. Similar differences were observed for the PALs, even increased by prism and base curve effect, with figures greater than 1 diopter in the periphery. The measurements made on the prism and lenses with different base curves suggest that base curve, thickness, and prismatic effect can all contribute to the differences among instruments. Measurements of a given lens taken with different lens mappers can vary substantially. Particular caution should be exercised when interpreting power maps for PALs taken with different instruments.

Building the Pipeline for Hubble Legacy Archive Grism data

NASA Astrophysics Data System (ADS)

Kümmel, M.; Albrecht, R.; Fosbury, R.; Freudling, W.; Haase, J.; Hook, R. N.; Kuntschner, H.; Lombardi, M.; Micol, A.; Rosa, M.; Stoehr, F.; Walsh, J. R.

2008-10-01

The Pipeline for Hubble Legacy Archive Grism data (PHLAG) is currently being developed as an end-to-end pipeline for the Hubble Legacy Archive (HLA). The inputs to PHLAG are slitless spectroscopic HST data with only the basic calibrations from standard HST pipelines applied; the outputs are fully calibrated, Virtuall Observatory-compatible spectra, which will be made available through a static HLA-archive. We give an overview of the various aspects of PHLAG. The pipeline consists of several subcomponents -- data preparation, data retrieval, image combination, object detection, spectral extraction using the aXe software, quality control -- which is discussed in detail. As a pilot project, PHLAG is currently being applied to NICMOS G141 grism data. Examples of G141 spectra reduced with PHLAG are shown.

Landsat sensor performance: history and current status

USGS Publications Warehouse

Markham, B.L.; Storey, James C.; Williams, Darrel L.; Irons, J.R.

2004-01-01

The current Thematic Mapper (TM) class of Landsat sensors began with Landsat-4, which was launched in 1982. This series continued with the nearly identical sensor on Landsat-5, launched in 1984. The final sensor in the series was the Landsat-7 Enhanced Thematic Mapper Plus (ETM+), which was carried into orbit in 1999. Varying degrees of effort have been devoted to the characterization of these instruments and data over the past 22 years. Extensive short-lived efforts early in the history, very limited efforts in the middle years, and now a systematic program for continuing characterization of all three systems are apparent. Currently, both the Landsat-5 TM and the Landsat-7 ETM+ are operational and providing data. Despite 20+ years of operation, the TM on Landsat-5 is fully functional, although downlinks for the data are limited. Landsat-7 ETM+ experienced a failure of its Scan Line Corrector mechanism in May 2003. Although there are gaps in the data coverage, the data remain of equivalent quality to prefailure data. Data products have been developed to fill these gaps using other ETM+ scenes.

76 FR 5580 - Eagle Crest Energy Company; Notice of Applicant-Proposed Water Pipeline Route for the Proposed...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-02-01

... Hydroelectric Project (Eagle Mountain Project). This notice describes the water supply pipeline route proposed... property that would be crossed by the proposed water supply pipeline. We are currently soliciting comments on the proposed water supply pipeline and the draft EIS. Additionally, as discussed below, we will be...

78 FR 50077 - Intent To Request Renewal From OMB of One Current Public Collection of Information: Pipeline...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-08-16

... maps, security plans, etc.); and Actual or suspected cyber-attacks that could impact pipeline... suspected attacks on pipeline systems, facilities, or assets; Bomb threats or weapons of mass destruction...

49 CFR 193.2017 - Plans and procedures.

Code of Federal Regulations, 2010 CFR

2010-10-01

... Transportation Other Regulations Relating to Transportation (Continued) PIPELINE AND HAZARDOUS MATERIALS SAFETY ADMINISTRATION, DEPARTMENT OF TRANSPORTATION (CONTINUED) PIPELINE SAFETY LIQUEFIED NATURAL GAS FACILITIES... submitted a current certification or agreement with respect to the plant under the pipeline safety laws (49...

Operon-mapper: A Web Server for Precise Operon Identification in Bacterial and Archaeal Genomes.

PubMed

Taboada, Blanca; Estrada, Karel; Ciria, Ricardo; Merino, Enrique

2018-06-19

Operon-mapper is a web server that accurately, easily, and directly predicts the operons of any bacterial or archaeal genome sequence. The operon predictions are based on the intergenic distance of neighboring genes as well as the functional relationships of their protein-coding products. To this end, Operon-mapper finds all the ORFs within a given nucleotide sequence, along with their genomic coordinates, orthology groups, and functional relationships. We believe that Operon-mapper, due to its accuracy, simplicity and speed, as well as the relevant information that it generates, will be a useful tool for annotating and characterizing genomic sequences. http://biocomputo.ibt.unam.mx/operon_mapper/.

49 CFR 193.2633 - Interference currents.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 49 Transportation 3 2010-10-01 2010-10-01 false Interference currents. 193.2633 Section 193.2633 Transportation Other Regulations Relating to Transportation (Continued) PIPELINE AND HAZARDOUS MATERIALS SAFETY ADMINISTRATION, DEPARTMENT OF TRANSPORTATION (CONTINUED) PIPELINE SAFETY LIQUEFIED NATURAL GAS FACILITIES...

The Teacher Supply Pipeline in Illinois: Entrance into and Exit from Teaching. Policy Research Brief

ERIC Educational Resources Information Center

Presley, Jennifer B.

2002-01-01

This Policy Research Brief summarizes findings from several studies of the Illinois teacher supply pipeline. It describes current teacher shortages, and identifies opportunities to plug leaks in the teacher supply pipeline. (Contains 7 endnotes.)

Hybrid Laser/GMAW of High Strength Steel Gas Transmission Pipelines

DOT National Transportation Integrated Search

2008-07-01

Pipelines will be an integral part of our energy distribution systems for the foreseeable future. Operators are currently considering the installation of tens of billions of dollars of pipeline infrastructure. In a number of cases, the cost of export...

Evaluation of corn/soybeans separability using Thematic Mapper and Thematic Mapper Simulator data

NASA Technical Reports Server (NTRS)

Pitts, D. E.; Badhwar, G. D.; Thompson, D. R.; Henderson, K. E.; Shen, S. S.; Sorensen, C. T.; Carnes, J. G.

1984-01-01

Multitemporal Thematic Mapper, Thematic Mapper Simulator, and detailed ground truth data were collected for a 9- by 11-km sample segment in Webster County, IA, in the summer of 1982. Three dates were acquired each with Thematic Mapper Simulator (June 7, June 23, and July 31) and Thematic Mapper (August 2, September 3, and October 21). The Thematic Mapper Simulator data were converted to equivalent TM count values using TM and TMS calibration data and model based estimates of atmospheric effects. The July 31, TMS image was compared to the August 2, TM image to verify the conversion process. A quantitative measure of proportion estimation variance (Fisher information) was used to evaluate the corn/soybeans separability for each TM band as a function of time during the growing season. The additional bands in the middle infrared allowed corn and soybeans to be separated much earlier than was possible with the visible and near-infrared bands alone. Using the TM and TMS data, temporal profiles of the TM principal components were developed. The greenness and brightness exhibited behavior similar to MSS greenness and brightness for corn and soybeans.

Simulation of Thematic Mapper performance as a function of sensor scanning parameters

NASA Technical Reports Server (NTRS)

Johnson, R. H.; Shah, N. J.; Schmidt, N. F.

1975-01-01

The investigation and results of the Thematic Mapper Instrument Performance Study are described. The Thematic Mapper is the advanced multispectral scanner initially planned for the Earth Observation Satellite and now planned for LANDSAT D. The use of existing digital airborne scanner data obtained with the Modular Multispectral Scanner (M2S) at Bendix provided an opportunity to simulate the effects of variation of design parameters of the Thematic Mapper. Analysis and processing of this data on the Bendix Multispectral Data Analysis System were used to empirically determine categorization performance on data generated with variations of the sampling period and scan overlap parameters of the Thematic Mapper. The Bendix M2S data, with a 2.5 milliradian instantaneous field of view and a spatial resolution (pixel size) of 10-m from 13,000 ft altitude, allowed a direct simulation of Thematic Mapper data with a 30-m resolution. The flight data chosen were obtained on 30 June 1973 over agricultural test sites in Indiana.

Simulating polar bear energetics during a seasonal fast using a mechanistic model.

PubMed

Mathewson, Paul D; Porter, Warren P

2013-01-01

In this study we tested the ability of a mechanistic model (Niche Mapper™) to accurately model adult, non-denning polar bear (Ursus maritimus) energetics while fasting during the ice-free season in the western Hudson Bay. The model uses a steady state heat balance approach, which calculates the metabolic rate that will allow an animal to maintain its core temperature in its particular microclimate conditions. Predicted weight loss for a 120 day fast typical of the 1990s was comparable to empirical studies of the population, and the model was able to reach a heat balance at the target metabolic rate for the entire fast, supporting use of the model to explore the impacts of climate change on polar bears. Niche Mapper predicted that all but the poorest condition bears would survive a 120 day fast under current climate conditions. When the fast extended to 180 days, Niche Mapper predicted mortality of up to 18% for males. Our results illustrate how environmental conditions, variation in animal properties, and thermoregulation processes may impact survival during extended fasts because polar bears were predicted to require additional energetic expenditure for thermoregulation during a 180 day fast. A uniform 3°C temperature increase reduced male mortality during a 180 day fast from 18% to 15%. Niche Mapper explicitly links an animal's energetics to environmental conditions and thus can be a valuable tool to help inform predictions of climate-related population changes. Since Niche Mapper is a generic model, it can make energetic predictions for other species threatened by climate change.

Simulating Polar Bear Energetics during a Seasonal Fast Using a Mechanistic Model

PubMed Central

Mathewson, Paul D.; Porter, Warren P.

2013-01-01

In this study we tested the ability of a mechanistic model (Niche Mapper™) to accurately model adult, non-denning polar bear (Ursus maritimus) energetics while fasting during the ice-free season in the western Hudson Bay. The model uses a steady state heat balance approach, which calculates the metabolic rate that will allow an animal to maintain its core temperature in its particular microclimate conditions. Predicted weight loss for a 120 day fast typical of the 1990s was comparable to empirical studies of the population, and the model was able to reach a heat balance at the target metabolic rate for the entire fast, supporting use of the model to explore the impacts of climate change on polar bears. Niche Mapper predicted that all but the poorest condition bears would survive a 120 day fast under current climate conditions. When the fast extended to 180 days, Niche Mapper predicted mortality of up to 18% for males. Our results illustrate how environmental conditions, variation in animal properties, and thermoregulation processes may impact survival during extended fasts because polar bears were predicted to require additional energetic expenditure for thermoregulation during a 180 day fast. A uniform 3°C temperature increase reduced male mortality during a 180 day fast from 18% to 15%. Niche Mapper explicitly links an animal’s energetics to environmental conditions and thus can be a valuable tool to help inform predictions of climate-related population changes. Since Niche Mapper is a generic model, it can make energetic predictions for other species threatened by climate change. PMID:24019883

Mapper: high throughput maskless lithography

NASA Astrophysics Data System (ADS)

Kuiper, V.; Kampherbeek, B. J.; Wieland, M. J.; de Boer, G.; ten Berge, G. F.; Boers, J.; Jager, R.; van de Peut, T.; Peijster, J. J. M.; Slot, E.; Steenbrink, S. W. H. K.; Teepen, T. F.; van Veen, A. H. V.

2009-01-01

Maskless electron beam lithography, or electron beam direct write, has been around for a long time in the semiconductor industry and was pioneered from the mid-1960s onwards. This technique has been used for mask writing applications as well as device engineering and in some cases chip manufacturing. However because of its relatively low throughput compared to optical lithography, electron beam lithography has never been the mainstream lithography technology. To extend optical lithography double patterning, as a bridging technology, and EUV lithography are currently explored. Irrespective of the technical viability of both approaches, one thing seems clear. They will be expensive [1]. MAPPER Lithography is developing a maskless lithography technology based on massively-parallel electron-beam writing with high speed optical data transport for switching the electron beams. In this way optical columns can be made with a throughput of 10-20 wafers per hour. By clustering several of these columns together high throughputs can be realized in a small footprint. This enables a highly cost-competitive alternative to double patterning and EUV alternatives. In 2007 MAPPER obtained its Proof of Lithography milestone by exposing in its Demonstrator 45 nm half pitch structures with 110 electron beams in parallel, where all the beams where individually switched on and off [2]. In 2008 MAPPER has taken a next step in its development by building several tools. A new platform has been designed and built which contains a 300 mm wafer stage, a wafer handler and an electron beam column with 110 parallel electron beams. This manuscript describes the first patterning results with this 300 mm platform.

Effects of Landsat 5 Thematic Mapper and Landsat 7 Enhanced Thematic Mapper plus radiometric and geometric calibrations and corrections on landscape characterization

USGS Publications Warehouse

Vogelmann, James E.; Helder, Dennis; Morfitt, Ron; Choate, Michael J.; Merchant, James W.; Bulley, Henry

2001-01-01

The Thematic Mapper (TM) instruments onboard Landsats 4 and 5 provide high-quality imagery appropriate for many different applications, including land cover mapping, landscape ecology, and change detection. Precise calibration was considered to be critical to the success of the Landsat 7 mission and, thus, issues of calibration were given high priority during the development of the Enhanced Thematic Mapper Plus (ETM+). Data sets from the Landsat 5 TM are not routinely corrected for a number of radiometric and geometric artifacts, including memory effect, gain/bias, and interfocal plane misalignment. In the current investigation, the effects of correcting vs. not correcting these factors were investigated for several applications. Gain/bias calibrations were found to have a greater impact on most applications than did memory effect calibrations. Correcting interfocal plane offsets was found to have a moderate effect on applications. On June 2, 1999, Landsats 5 and 7 data were acquired nearly simultaneously over a study site in the Niobrara, NE area. Field radiometer data acquired at that site were used to facilitate crosscalibrations of Landsats 5 and 7 data. Current findings and results from previous investigations indicate that the internal calibrator of Landsat 5 TM tracked instrument gain well until 1988. After this, the internal calibrator diverged from the data derived from vicarious calibrations. Results from this study also indicate very good agreement between prelaunch measurements and vicarious calibration data for all Landsat 7 reflective bands except Band 4. Values are within about 3.5% of each other, except for Band 4, which differs by 10%. Coefficient of variation (CV) values derived from selected targets in the imagery were also analyzed. The Niobrara Landsat 7 imagery was found to have lower CV values than Landsat 5 data, implying that lower levels of noise characterize Landsat 7 data than current Landsat 5 data. It was also found that following radiometric normalization, the Normalized Difference Vegetation Index (NDVI) imagery and classification products of Landsats 5 and 7 were very similar. This implies that data from the two sensors can be used to measure and monitor the same landscape phenomena and that Landsats 5 and 7 data can be used interchangeably with proper caution. In addition, it was found that difference imagery produced using Landsat 7 ETM+ data are of excellent quality.

Freight pipelines: Current status and anticipated future use

DOE Office of Scientific and Technical Information (OSTI.GOV)

NONE

1998-07-01

This report is issued by the Task Committee on Freight Pipelines, Pipeline Division, ASCE. Freight pipelines of various types (including slurry pipeline, pneumatic pipeline, and capsule pipeline) have been used throughout the world for over a century for transporting solid and sometimes even package products. Recent advancements in pipeline technology, aided by advanced computer control systems and trenchless technologies, have greatly facilitated the transportation of solids by pipelines. Today, in many situations, freight pipelines are not only the most economical and practical means for transporting solids, they are also the most reliable, safest and most environmentally friendly transportation mode. Increasedmore » use of underground pipelines to transport freight is anticipated in the future, especially as the technology continues to improve and surface transportation modes such as highways become more congested. This paper describes the state of the art and expected future uses of various types of freight pipelines. Obstacles hindering the development and use of the most advanced freight pipeline systems, such as the pneumatic capsule pipeline for interstate transport of freight, are discussed.« less

Cathodic Protection Measurement Through Inline Inspection Technology Uses and Observations

NASA Astrophysics Data System (ADS)

Ferguson, Briana Ley

This research supports the evaluation of an impressed current cathodic protection (CP) system of a buried coated steel pipeline through alternative technology and methods, via an inline inspection device (ILI, CP ILI tool, or tool), in order to prevent and mitigate external corrosion. This thesis investigates the ability to measure the current density of a pipeline's CP system from inside of a pipeline rather than manually from outside, and then convert that CP ILI tool reading into a pipe-to-soil potential as required by regulations and standards. This was demonstrated through a mathematical model that utilizes applications of Ohm's Law, circuit concepts, and attenuation principles in order to match the results of the ILI sample data by varying parameters of the model (i.e., values for over potential and coating resistivity). This research has not been conducted previously in order to determine if the protected potential range can be achieved with respect to the predicted current density from the CP ILI device. Kirchhoff's method was explored, but certain principals could not be used in the model as manual measurements were required. This research was based on circuit concepts which indirectly affected electrochemical processes. Through Ohm's law, the results show that a constant current density is possible in the protected potential range; therefore, indicates polarization of the pipeline, which leads to calcareous deposit development with respect to electrochemistry. Calcareous deposit is desirable in industry since it increases the resistance of the pipeline coating and lowers current, thus slowing the oxygen diffusion process. This research conveys that an alternative method for CP evaluation from inside of the pipeline is possible where the pipe-to-soil potential can be estimated (as required by regulations) from the ILI tool's current density measurement.

Evaluation of spatial, radiometric and spectral Thematic Mapper performance for coastal studies

NASA Technical Reports Server (NTRS)

Klemas, V. (Principal Investigator)

1983-01-01

A series of experiments were initiated to determine the feasibility of using thematic mapper spectral data to estimate wetlands biomass. The experiments were conducted using hand-held radiometers simulating thematic mapper wavebands 3, 4 and 5. Spectral radiance data were collected from the ground and from a low altitude aircraft in an attempt to gain some insight into the potential utility of actual thematic mapper data for biomass estimation in wetland plant communities. In addition, radiative transfer models describing volume reflectance of eight water column containing submerged aquatic vegetation were refined.

Using Medical Text Extraction, Reasoning and Mapping System (MTERMS) to Process Medication Information in Outpatient Clinical Notes

PubMed Central

Zhou, Li; Plasek, Joseph M; Mahoney, Lisa M; Karipineni, Neelima; Chang, Frank; Yan, Xuemin; Chang, Fenny; Dimaggio, Dana; Goldman, Debora S.; Rocha, Roberto A.

2011-01-01

Clinical information is often coded using different terminologies, and therefore is not interoperable. Our goal is to develop a general natural language processing (NLP) system, called Medical Text Extraction, Reasoning and Mapping System (MTERMS), which encodes clinical text using different terminologies and simultaneously establishes dynamic mappings between them. MTERMS applies a modular, pipeline approach flowing from a preprocessor, semantic tagger, terminology mapper, context analyzer, and parser to structure inputted clinical notes. Evaluators manually reviewed 30 free-text and 10 structured outpatient clinical notes compared to MTERMS output. MTERMS achieved an overall F-measure of 90.6 and 94.0 for free-text and structured notes respectively for medication and temporal information. The local medication terminology had 83.0% coverage compared to RxNorm’s 98.0% coverage for free-text notes. 61.6% of mappings between the terminologies are exact match. Capture of duration was significantly improved (91.7% vs. 52.5%) from systems in the third i2b2 challenge. PMID:22195230

Design Optimization of Innovative High-Level Waste Pipeline Unplugging Technologies - 13341

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pribanic, T.; Awwad, A.; Varona, J.

2013-07-01

Florida International University (FIU) is currently working on the development and optimization of two innovative pipeline unplugging methods: the asynchronous pulsing system (APS) and the peristaltic crawler system (PCS). Experiments were conducted on the APS to determine how air in the pipeline influences the system's performance as well as determine the effectiveness of air mitigation techniques in a pipeline. The results obtained during the experimental phase of the project, including data from pipeline pressure pulse tests along with air bubble compression tests are presented. Single-cycle pulse amplification caused by a fast-acting cylinder piston pump in 21.8, 30.5, and 43.6 mmore » pipelines were evaluated. Experiments were conducted on fully flooded pipelines as well as pipelines that contained various amounts of air to evaluate the system's performance when air is present in the pipeline. Also presented are details of the improvements implemented to the third generation crawler system (PCS). The improvements include the redesign of the rims of the unit to accommodate a camera system that provides visual feedback of the conditions inside the pipeline. Visual feedback allows the crawler to be used as a pipeline unplugging and inspection tool. Tests conducted previously demonstrated a significant reduction of the crawler speed with increasing length of tether. Current improvements include the positioning of a pneumatic valve manifold system that is located in close proximity to the crawler, rendering tether length independent of crawler speed. Additional improvements to increase the crawler's speed were also investigated and presented. Descriptions of the test beds, which were designed to emulate possible scenarios present on the Department of Energy (DOE) pipelines, are presented. Finally, conclusions and recommendations for the systems are provided. (authors)« less

Methods for protecting subsea pipelines and installations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rochelle, W.R.; Simpson, D.M.

1981-01-01

The hazards for subsea pipelines and installations are described. Methods currently being used to protect subsea pipelines and installations are discussed with the emphasis on various trenching methods and equipment. Technical data on progress rates for trenching and feasible depths of trench are given. Possible methods for protection against icebergs are discussed. A case for more comprehensive data on icebergs is presented. Should a pipeline become damaged, repair methods are noted.

An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome.

PubMed

Ribeiro, Antonio; Golicz, Agnieszka; Hackett, Christine Anne; Milne, Iain; Stephen, Gordon; Marshall, David; Flavell, Andrew J; Bayer, Micha

2015-11-11

Single Nucleotide Polymorphisms (SNPs) are widely used molecular markers, and their use has increased massively since the inception of Next Generation Sequencing (NGS) technologies, which allow detection of large numbers of SNPs at low cost. However, both NGS data and their analysis are error-prone, which can lead to the generation of false positive (FP) SNPs. We explored the relationship between FP SNPs and seven factors involved in mapping-based variant calling - quality of the reference sequence, read length, choice of mapper and variant caller, mapping stringency and filtering of SNPs by read mapping quality and read depth. This resulted in 576 possible factor level combinations. We used error- and variant-free simulated reads to ensure that every SNP found was indeed a false positive. The variation in the number of FP SNPs generated ranged from 0 to 36,621 for the 120 million base pairs (Mbp) genome. All of the experimental factors tested had statistically significant effects on the number of FP SNPs generated and there was a considerable amount of interaction between the different factors. Using a fragmented reference sequence led to a dramatic increase in the number of FP SNPs generated, as did relaxed read mapping and a lack of SNP filtering. The choice of reference assembler, mapper and variant caller also significantly affected the outcome. The effect of read length was more complex and suggests a possible interaction between mapping specificity and the potential for contributing more false positives as read length increases. The choice of tools and parameters involved in variant calling can have a dramatic effect on the number of FP SNPs produced, with particularly poor combinations of software and/or parameter settings yielding tens of thousands in this experiment. Between-factor interactions make simple recommendations difficult for a SNP discovery pipeline but the quality of the reference sequence is clearly of paramount importance. Our findings are also a stark reminder that it can be unwise to use the relaxed mismatch settings provided as defaults by some read mappers when reads are being mapped to a relatively unfinished reference sequence from e.g. a non-model organism in its early stages of genomic exploration.

In-Situ Transfer Standard and Coincident-View Intercomparisons for Sensor Cross-Calibration

NASA Technical Reports Server (NTRS)

Thome, Kurt; McCorkel, Joel; Czapla-Myers, Jeff

2013-01-01

There exist numerous methods for accomplishing on-orbit calibration. Methods include the reflectance-based approach relying on measurements of surface and atmospheric properties at the time of a sensor overpass as well as invariant scene approaches relying on knowledge of the temporal characteristics of the site. The current work examines typical cross-calibration methods and discusses the expected uncertainties of the methods. Data from the Advanced Land Imager (ALI), Advanced Spaceborne Thermal Emission and Reflection and Radiometer (ASTER), Enhanced Thematic Mapper Plus (ETM+), Moderate Resolution Imaging Spectroradiometer (MODIS), and Thematic Mapper (TM) are used to demonstrate the limits of relative sensor-to-sensor calibration as applied to current sensors while Landsat-5 TM and Landsat-7 ETM+ are used to evaluate the limits of in situ site characterizations for SI-traceable cross calibration. The current work examines the difficulties in trending of results from cross-calibration approaches taking into account sampling issues, site-to-site variability, and accuracy of the method. Special attention is given to the differences caused in the cross-comparison of sensors in radiance space as opposed to reflectance space. The results show that cross calibrations with absolute uncertainties lesser than 1.5 percent (1 sigma) are currently achievable even for sensors without coincident views.

78 FR 19409 - Annual Charge Filing Procedures for Natural Gas Pipelines

Federal Register 2010, 2011, 2012, 2013, 2014

2013-04-01

...; Order No. 776] Annual Charge Filing Procedures for Natural Gas Pipelines AGENCY: Federal Energy... Commission (Commission or FERC) is amending its regulations to revise the filing requirements for natural gas...) clause. Currently, natural gas pipelines utilizing an ACA clause must make an annual tariff filing to...

Thematic mapper design parameter investigation

NASA Technical Reports Server (NTRS)

Colby, C. P., Jr.; Wheeler, S. G.

1978-01-01

This study simulated the multispectral data sets to be expected from three different Thematic Mapper configurations, and the ground processing of these data sets by three different resampling techniques. The simulated data sets were then evaluated by processing them for multispectral classification, and the Thematic Mapper configuration, and resampling technique which provided the best classification accuracy were identified.

Resource and environmental surveys from space with the thematic mapper in the 1980's

NASA Technical Reports Server (NTRS)

1976-01-01

The selection of observation of vegetation is the primary optimization objective of the thematic mapper. The following are aspects of plans for the thematic mapper: (1) to include an appropriately modified first generation MSS in the thematic mapper mission; (2) to provide assured coverage for a minimum of six years to give agencies and other users an opportunity to justify the necessary commitment of resources for the transition into a completely valid operational phase; (3) to provide for global, direct data read-out, without the necessity for on-board data storage or dependence on foreign receiving stations; (4) to recognize the operational character of the thematic mapper after successful completion of its experimental evaluation; and (5) to combine future experimental packages with compatible orbits as part of the operational LANDSAT follow-on payloads.

A mobile, web-based system can improve positive airway pressure adherence.

PubMed

Hostler, Jordanna M; Sheikh, Karen L; Andrada, Teotimo F; Khramtsov, Andrei; Holley, Paul R; Holley, Aaron B

2017-04-01

SleepMapper is a mobile, web-based system that allows patients to self-monitor their positive airway pressure therapy, and provides feedback and education in real time. In addition to the usual, comprehensive support provided at our clinic, we gave the SleepMapper to 30 patients initiating positive airway pressure. They were compared with patients initiating positive airway pressure at our clinic without SleepMapper (controls) to determine whether SleepMapper affected adherence. A total of 61 patients had polysomnographic and adherence data analysed, 30 were given SleepMapper and 31 received our standard of care. The two groups were well matched at baseline to include no significant differences in age, apnea-hypopnea index, percentage receiving split-night polysomnographs and starting pressures. Patients in the control group received significantly more non-benzodiazepine sedative hypnotics the night of their polysomnography and during positive airway pressure initiation. At 11 weeks, patients in the SleepMapper group had a greater percentage of nights with any use (78.0 ± 22.0 versus 55.5 ± 24.0%; P < 0.001) and >4 h positive airway pressure use (78.0 ± 22.0 versus 55.5 ± 24.0%; P = 0.02). There was a trend toward more patients in the SleepMapper group achieving >4 h of use for at least 70% of nights [9/30 (30%) versus 3/31 (9.7%); P = 0.06]. In multivariate linear regression, the SleepMapper remained significantly associated with percentage of nights >4 h positive airway pressure use (β coefficient = 0.18; P = 0.02). Added to our usual, comprehensive programme to maximize positive airway pressure adherence in new users, the SleepMapper was independently associated with an 18% increase in nights >4 h of use. © 2016 European Sleep Research Society.

Lineage mapper: A versatile cell and particle tracker

NASA Astrophysics Data System (ADS)

Chalfoun, Joe; Majurski, Michael; Dima, Alden; Halter, Michael; Bhadriraju, Kiran; Brady, Mary

2016-11-01

The ability to accurately track cells and particles from images is critical to many biomedical problems. To address this, we developed Lineage Mapper, an open-source tracker for time-lapse images of biological cells, colonies, and particles. Lineage Mapper tracks objects independently of the segmentation method, detects mitosis in confluence, separates cell clumps mistakenly segmented as a single cell, provides accuracy and scalability even on terabyte-sized datasets, and creates division and/or fusion lineages. Lineage Mapper has been tested and validated on multiple biological and simulated problems. The software is available in ImageJ and Matlab at isg.nist.gov.

HGDP and HapMap Analysis by Ancestry Mapper Reveals Local and Global Population Relationships

PubMed Central

Magalhães, Tiago R.; Casey, Jillian P.; Conroy, Judith; Regan, Regina; Fitzpatrick, Darren J.; Shah, Naisha; Sobral, João; Ennis, Sean

2012-01-01

Knowledge of human origins, migrations, and expansions is greatly enhanced by the availability of large datasets of genetic information from different populations and by the development of bioinformatic tools used to analyze the data. We present Ancestry Mapper, which we believe improves on existing methods, for the assignment of genetic ancestry to an individual and to study the relationships between local and global populations. The principle function of the method, named Ancestry Mapper, is to give each individual analyzed a genetic identifier, made up of just 51 genetic coordinates, that corresponds to its relationship to the HGDP reference population. As a consequence, the Ancestry Mapper Id (AMid) has intrinsic biological meaning and provides a tool to measure similarity between world populations. We applied Ancestry Mapper to a dataset comprised of the HGDP and HapMap data. The results show distinctions at the continental level, while simultaneously giving details at the population level. We clustered AMids of HGDP/HapMap and observe a recapitulation of human migrations: for a small number of clusters, individuals are grouped according to continental origins; for a larger number of clusters, regional and population distinctions are evident. Calculating distances between AMids allows us to infer ancestry. The number of coordinates is expandable, increasing the power of Ancestry Mapper. An R package called Ancestry Mapper is available to apply this method to any high density genomic data set. PMID:23189146

HGDP and HapMap analysis by Ancestry Mapper reveals local and global population relationships.

PubMed

Magalhães, Tiago R; Casey, Jillian P; Conroy, Judith; Regan, Regina; Fitzpatrick, Darren J; Shah, Naisha; Sobral, João; Ennis, Sean

2012-01-01

Knowledge of human origins, migrations, and expansions is greatly enhanced by the availability of large datasets of genetic information from different populations and by the development of bioinformatic tools used to analyze the data. We present Ancestry Mapper, which we believe improves on existing methods, for the assignment of genetic ancestry to an individual and to study the relationships between local and global populations. The principle function of the method, named Ancestry Mapper, is to give each individual analyzed a genetic identifier, made up of just 51 genetic coordinates, that corresponds to its relationship to the HGDP reference population. As a consequence, the Ancestry Mapper Id (AMid) has intrinsic biological meaning and provides a tool to measure similarity between world populations. We applied Ancestry Mapper to a dataset comprised of the HGDP and HapMap data. The results show distinctions at the continental level, while simultaneously giving details at the population level. We clustered AMids of HGDP/HapMap and observe a recapitulation of human migrations: for a small number of clusters, individuals are grouped according to continental origins; for a larger number of clusters, regional and population distinctions are evident. Calculating distances between AMids allows us to infer ancestry. The number of coordinates is expandable, increasing the power of Ancestry Mapper. An R package called Ancestry Mapper is available to apply this method to any high density genomic data set.

Natural Gas Transportation - Infrastructure Issues and Operational Trends

EIA Publications

2001-01-01

This report examines how well the current national natural gas pipeline network has been able to handle today's market demand for natural gas. In addition, it identifies those areas of the country where pipeline utilization is continuing to grow rapidly and where new pipeline capacity is needed or is planned over the next several years.

CheS-Mapper 2.0 for visual validation of (Q)SAR models

PubMed Central

2014-01-01

Background Sound statistical validation is important to evaluate and compare the overall performance of (Q)SAR models. However, classical validation does not support the user in better understanding the properties of the model or the underlying data. Even though, a number of visualization tools for analyzing (Q)SAR information in small molecule datasets exist, integrated visualization methods that allow the investigation of model validation results are still lacking. Results We propose visual validation, as an approach for the graphical inspection of (Q)SAR model validation results. The approach applies the 3D viewer CheS-Mapper, an open-source application for the exploration of small molecules in virtual 3D space. The present work describes the new functionalities in CheS-Mapper 2.0, that facilitate the analysis of (Q)SAR information and allows the visual validation of (Q)SAR models. The tool enables the comparison of model predictions to the actual activity in feature space. The approach is generic: It is model-independent and can handle physico-chemical and structural input features as well as quantitative and qualitative endpoints. Conclusions Visual validation with CheS-Mapper enables analyzing (Q)SAR information in the data and indicates how this information is employed by the (Q)SAR model. It reveals, if the endpoint is modeled too specific or too generic and highlights common properties of misclassified compounds. Moreover, the researcher can use CheS-Mapper to inspect how the (Q)SAR model predicts activity cliffs. The CheS-Mapper software is freely available at http://ches-mapper.org. Graphical abstract Comparing actual and predicted activity values with CheS-Mapper.

Collaboration in teacher workshops and citizen science

NASA Astrophysics Data System (ADS)

Gibbs, M. G.; Buxner, S.; Gay, P.; Crown, D. A.; Bracey, G.; Gugliucci, N.; Costello, K.; Reilly, E.

2013-12-01

The Moon and Earth system is an important topic for elementary and middle school science classrooms. Elementary and middle school teachers are challenged to keep current in science. The Planetary Science Institute created a program titled Workshops in Science Education and Resources (WISER): Planetary Perspectives to assist in-service K-12 teachers with their knowledge in earth and space science, using up-to-date science and inquiry activities to assist them in engaging their students. To augment the science and add a new aspect for teacher professional development, PSI is working in a new partnership collaborating with the Cosmoquest project in engaging teachers in authentic inquiry of the Moon. Teachers now learn about the Moon from PSI scientists and education staff and then engage in inquiry of the Moon using CosmoQuest's online citizen science project MoonMappers and its accompanying classroom curriculum TerraLuna. Through MoonMappers, teachers and students explore the lunar surface by viewing high-resolution pictures from the Lunar Reconnaissance Orbiter and marking craters and other interesting features. In addition, TerraLuna provides a unit of inquiry-based activities that bring MoonMappers and its science content into the classroom. This program addresses standards teachers need to teach and helps them not only teach about the Moon but also engage their students in authentic inquiry of the lunar surface.

Landsat-7 Enhanced Thematic Mapper plus radiometric calibration

USGS Publications Warehouse

Markham, B.L.; Boncyk, Wayne C.; Helder, D.L.; Barker, J.L.

1997-01-01

Landsat-7 is currently being built and tested for launch in 1998. The Enhanced Thematic Mapper Plus (ETM+) sensor for Landsat-7, a derivative of the highly successful Thematic Mapper (TM) sensors on Landsats 4 and 5, and the Landsat-7 ground system are being built to provide enhanced radiometric calibration performance. In addition, regular vicarious calibration campaigns are being planned to provide additional information for calibration of the ETM+ instrument. The primary upgrades to the instrument include the addition of two solar calibrators: the full aperture solar calibrator, a deployable diffuser, and the partial aperture solar calibrator, a passive device that allows the ETM+ to image the sun. The ground processing incorporates for the first time an off-line facility, the Image Assessment System (IAS), to perform calibration, evaluation and analysis. Within the IAS, processing capabilities include radiometric artifact characterization and correction, radiometric calibration from the multiple calibrator sources, inclusion of results from vicarious calibration and statistical trending of calibration data to improve calibration estimation. The Landsat Product Generation System, the portion of the ground system responsible for producing calibrated products, will incorporate the radiometric artifact correction algorithms and will use the calibration information generated by the IAS. This calibration information will also be supplied to ground processing systems throughout the world.

Parallel processing optimization strategy based on MapReduce model in cloud storage environment

NASA Astrophysics Data System (ADS)

Cui, Jianming; Liu, Jiayi; Li, Qiuyan

2017-05-01

Currently, a large number of documents in the cloud storage process employed the way of packaging after receiving all the packets. From the local transmitter this stored procedure to the server, packing and unpacking will consume a lot of time, and the transmission efficiency is low as well. A new parallel processing algorithm is proposed to optimize the transmission mode. According to the operation machine graphs model work, using MPI technology parallel execution Mapper and Reducer mechanism. It is good to use MPI technology to implement Mapper and Reducer parallel mechanism. After the simulation experiment of Hadoop cloud computing platform, this algorithm can not only accelerate the file transfer rate, but also shorten the waiting time of the Reducer mechanism. It will break through traditional sequential transmission constraints and reduce the storage coupling to improve the transmission efficiency.

Geostationary Carbon Process Mapper (GCPM)

NASA Technical Reports Server (NTRS)

Key, Richard; Sander, Stanley; Eldering, Annmarie; Miller, Charles; Frankenberg, Christian; Natraj, Vijay; Rider, David; Blavier, Jean-Francois; Bekker, Dmitriy; Wu, Yen-Hung

2012-01-01

Geostationary Carbon Process Mapper (GCPM) is an earth science mission to measure key atmospheric trace gases related to climate change and human activity.Understanding of sources and sinks of CO2 is currently limited by frequency of observations and uncertainty in vertical transport. GCPM improves this situation by making simultaneous high resolution measurements of CO2, CH4, CF, and CO in near-IR, many times per day. GCPM is able to investigate processes with time scales of minutes to hours. CO2, CH4, CF, Co selected because their combination provides information needed to disentangle natural and anthropogenic sources/sinks. Quasi-continuous monitoring effectively eliminates atmospheric transport uncertainties from source/sink inversion modeling. will have one instrument (GeoFTS), hosted on a commercial communications satellite, planned for two years operation. GCPM will affordably advance the understanding of observed cycle variability improving future climate projections.

The Leaking U.S. Educational Pipeline and Its Implications for the Future

ERIC Educational Resources Information Center

Torraco, Richard J.; Hamilton, David W.

2013-01-01

We examine the United States educational pipeline and the relationship between our nation's current educational policy, which results in the loss of substantial numbers of students from our education system, and the social and economic consequences of maintaining our current policies. Projections of changes in those moving through the educational…

Development of image mappers for hyperspectral biomedical imaging applications

PubMed Central

Kester, Robert T.; Gao, Liang; Tkaczyk, Tomasz S.

2010-01-01

A new design and fabrication method is presented for creating large-format (>100 mirror facets) image mappers for a snapshot hyperspectral biomedical imaging system called an image mapping spectrometer (IMS). To verify this approach a 250 facet image mapper with 25 multiple-tilt angles is designed for a compact IMS that groups the 25 subpupils in a 5 × 5 matrix residing within a single collecting objective's pupil. The image mapper is fabricated by precision diamond raster fly cutting using surface-shaped tools. The individual mirror facets have minimal edge eating, tilt errors of <1 mrad, and an average roughness of 5.4 nm. PMID:20357875

cMapper: gene-centric connectivity mapper for EBI-RDF platform.

PubMed

Shoaib, Muhammad; Ansari, Adnan Ahmad; Ahn, Sung-Min

2017-01-15

In this era of biological big data, data integration has become a common task and a challenge for biologists. The Resource Description Framework (RDF) was developed to enable interoperability of heterogeneous datasets. The EBI-RDF platform enables an efficient data integration of six independent biological databases using RDF technologies and shared ontologies. However, to take advantage of this platform, biologists need to be familiar with RDF technologies and SPARQL query language. To overcome this practical limitation of the EBI-RDF platform, we developed cMapper, a web-based tool that enables biologists to search the EBI-RDF databases in a gene-centric manner without a thorough knowledge of RDF and SPARQL. cMapper allows biologists to search data entities in the EBI-RDF platform that are connected to genes or small molecules of interest in multiple biological contexts. The input to cMapper consists of a set of genes or small molecules, and the output are data entities in six independent EBI-RDF databases connected with the given genes or small molecules in the user's query. cMapper provides output to users in the form of a graph in which nodes represent data entities and the edges represent connections between data entities and inputted set of genes or small molecules. Furthermore, users can apply filters based on database, taxonomy, organ and pathways in order to focus on a core connectivity graph of their interest. Data entities from multiple databases are differentiated based on background colors. cMapper also enables users to investigate shared connections between genes or small molecules of interest. Users can view the output graph on a web browser or download it in either GraphML or JSON formats. cMapper is available as a web application with an integrated MySQL database. The web application was developed using Java and deployed on Tomcat server. We developed the user interface using HTML5, JQuery and the Cytoscape Graph API. cMapper can be accessed at http://cmapper.ewostech.net Readers can download the development manual from the website http://cmapper.ewostech.net/docs/cMapperDocumentation.pdf. Source Code is available at https://github.com/muhammadshoaib/cmapperContact:smahn@gachon.ac.krSupplementary information: Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

From Description to Explanation: An Empirical Exploration of the African-American Pipeline Problem in STEM

ERIC Educational Resources Information Center

Brown, Bryan A.; Henderson, J. Bryan; Gray, Salina; Donovan, Brian; Sullivan, Shayna; Patterson, Alexis; Waggstaff, William

2016-01-01

We conducted a mixed-methods study of matriculation issues for African-Americans in the STEM pipeline. The project compares the experiences of students currently majoring in science (N?=?304) with the experiences of those who have succeeded in earning science degrees (N?=?307). Participants were surveyed about their pipeline experiences based on…

49 CFR 195.575 - Which facilities must I electrically isolate and what inspections, tests, and safeguards are...

Code of Federal Regulations, 2013 CFR

2013-10-01

... reasonable to foresee fault currents or an unusual risk of lightning, you must protect the pipeline against... metallic structures, unless you electrically interconnect and cathodically protect the pipeline and the... isolation of a portion of a pipeline is necessary to facilitate the application of corrosion control. (c...

49 CFR 195.575 - Which facilities must I electrically isolate and what inspections, tests, and safeguards are...

Code of Federal Regulations, 2014 CFR

2014-10-01

... reasonable to foresee fault currents or an unusual risk of lightning, you must protect the pipeline against... metallic structures, unless you electrically interconnect and cathodically protect the pipeline and the... isolation of a portion of a pipeline is necessary to facilitate the application of corrosion control. (c...

49 CFR 195.575 - Which facilities must I electrically isolate and what inspections, tests, and safeguards are...

Code of Federal Regulations, 2012 CFR

2012-10-01

... reasonable to foresee fault currents or an unusual risk of lightning, you must protect the pipeline against... metallic structures, unless you electrically interconnect and cathodically protect the pipeline and the... isolation of a portion of a pipeline is necessary to facilitate the application of corrosion control. (c...

DOE Office of Scientific and Technical Information (OSTI.GOV)

SADE is a software package for rapidly assembling analytic pipelines to manipulate data. The packages consists of the engine that manages the data and coordinates the movement of data between the tasks performing a function? a set of core libraries consisting of plugins that perform common tasks? and a framework to extend the system supporting the development of new plugins. Currently through configuration files, a pipeline can be defined that maps the routing of data through a series of plugins. Pipelines can be run in a batch mode or can process streaming data? they can be executed from the commandmore » line or run through a Windows background service. There currently exists over a hundred plugins, over fifty pipeline configurations? and the software is now being used by about a half-dozen projects.« less

The Goes-R Geostationary Lightning Mapper (GLM): Algorithm and Instrument Status

NASA Technical Reports Server (NTRS)

Goodman, Steven J.; Blakeslee, Richard J.; Koshak, William J.; Mach, Douglas

2010-01-01

The Geostationary Operational Environmental Satellite (GOES-R) is the next series to follow the existing GOES system currently operating over the Western Hemisphere. Superior spacecraft and instrument technology will support expanded detection of environmental phenomena, resulting in more timely and accurate forecasts and warnings. Advancements over current GOES capabilities include a new capability for total lightning detection (cloud and cloud-to-ground flashes) from the Geostationary Lightning Mapper (GLM), and improved capability for the Advanced Baseline Imager (ABI). The Geostationary Lighting Mapper (GLM) will map total lightning activity (in-cloud and cloud-to-ground lighting flashes) continuously day and night with near-uniform spatial resolution of 8 km with a product refresh rate of less than 20 sec over the Americas and adjacent oceanic regions. This will aid in forecasting severe storms and tornado activity, and convective weather impacts on aviation safety and efficiency. In parallel with the instrument development (a prototype and 4 flight models), a GOES-R Risk Reduction Team and Algorithm Working Group Lightning Applications Team have begun to develop the Level 2 algorithms, cal/val performance monitoring tools, and new applications. Proxy total lightning data from the NASA Lightning Imaging Sensor on the Tropical Rainfall Measuring Mission (TRMM) satellite and regional test beds are being used to develop the pre-launch algorithms and applications, and also improve our knowledge of thunderstorm initiation and evolution. A joint field campaign with Brazilian researchers in 2010-2011 will produce concurrent observations from a VHF lightning mapping array, Meteosat multi-band imagery, Tropical Rainfall Measuring Mission (TRMM) Lightning Imaging Sensor (LIS) overpasses, and related ground and in-situ lightning and meteorological measurements in the vicinity of Sao Paulo. These data will provide a new comprehensive proxy data set for algorithm and application development.

The effect of spatial, spectral and radiometric factors on classification accuracy using thematic mapper data

NASA Technical Reports Server (NTRS)

Wrigley, R. C.; Acevedo, W.; Alexander, D.; Buis, J.; Card, D.

1984-01-01

An experiment of a factorial design was conducted to test the effects on classification accuracy of land cover types due to the improved spatial, spectral and radiometric characteristics of the Thematic Mapper (TM) in comparison to the Multispectral Scanner (MSS). High altitude aircraft scanner data from the Airborne Thematic Mapper instrument was acquired over central California in August, 1983 and used to simulate Thematic Mapper data as well as all combinations of the three characteristics for eight data sets in all. Results for the training sites (field center pixels) showed better classification accuracies for MSS spatial resolution, TM spectral bands and TM radiometry in order of importance.

A comparison between the first four thematic mapper reflective bands and other satellite sensor systems for vegetational monitoring

NASA Technical Reports Server (NTRS)

Tucker, C. J.

1978-01-01

The first four Landsat-D thematic mapper sensors were evaluated and compared to the RBV and MSS sensors from Landsats-1, 2, and 3, Colvocoresses' proposed 'operational Landsat' three band system, and the French SPOT three band system using simulation/integration techniques and in situ collected spectral reflectance data. Sensors were evaluated by their ability to discriminate vegetation biomass, chlorophyll concentration, and leaf water content. The thematic mapper and SPOT bands were superior in a spectral resolution context to the other three sensor systems for vegetational applications. Significant improvements are expected for vegetational analyses from Landsat-D thematic mapper and SPOT imagery over MSS and RBV imagery.

76 FR 78631 - Questar Pipeline Company; Notice of Intent To Prepare an Environmental Assessment for the...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-12-19

... are currently exposed, which would be removed. Questar would also construct a pig launcher/receiver \\1\\ facility at its new Mainline 103/68 junction. \\1\\ A pipeline ``pig'' is a device used to clean or inspect the pipeline. A pig launcher/receiver is an aboveground facility where pigs are inserted or retrieved...

SkyMapper Southern Survey: First Data Release (DR1)

NASA Astrophysics Data System (ADS)

Wolf, Christian; Onken, Christopher A.; Luvaul, Lance C.; Schmidt, Brian P.; Bessell, Michael S.; Chang, Seo-Won; Da Costa, Gary S.; Mackey, Dougal; Martin-Jones, Tony; Murphy, Simon J.; Preston, Tim; Scalzo, Richard A.; Shao, Li; Smillie, Jon; Tisserand, Patrick; White, Marc C.; Yuan, Fang

2018-02-01

We present the first data release of the SkyMapper Southern Survey, a hemispheric survey carried out with the SkyMapper Telescope at Siding Spring Observatory in Australia. Here, we present the survey strategy, data processing, catalogue construction, and database schema. The first data release dataset includes over 66 000 images from the Shallow Survey component, covering an area of 17 200 deg2 in all six SkyMapper passbands uvgriz, while the full area covered by any passband exceeds 20 000 deg2. The catalogues contain over 285 million unique astrophysical objects, complete to roughly 18 mag in all bands. We compare our griz point-source photometry with Pan-STARRS1 first data release and note an RMS scatter of 2%. The internal reproducibility of SkyMapper photometry is on the order of 1%. Astrometric precision is better than 0.2 arcsec based on comparison with Gaia first data release. We describe the end-user database, through which data are presented to the world community, and provide some illustrative science queries.

Software used with the flux mapper at the solar parabolic dish test site

NASA Technical Reports Server (NTRS)

Miyazono, C.

1984-01-01

Software for data archiving and data display was developed for use on a Digital Equipment Corporation (DEC) PDP-11/34A minicomputer for use with the JPL-designed flux mapper. The flux mapper is a two-dimensional, high radiant energy scanning device designed to measure radiant flux energies expected at the focal point of solar parabolic dish concentrators. Interfacing to the DEC equipment was accomplished by standard RS-232C serial lines. The design of the software was dicated by design constraints of the flux-mapper controller. Early attemps at data acquisition from the flux-mapper controller were not without difficulty. Time and personnel limitations result in an alternative method of data recording at the test site with subsequent analysis accomplished at a data evaluation location at some later time. Software for plotting was also written to better visualize the flux patterns. Recommendations for future alternative development are discussed. A listing of the programs used in the anaysis is included in an appendix.

HomozygosityMapper2012--bridging the gap between homozygosity mapping and deep sequencing.

PubMed

Seelow, Dominik; Schuelke, Markus

2012-07-01

Homozygosity mapping is a common method to map recessive traits in consanguineous families. To facilitate these analyses, we have developed HomozygosityMapper, a web-based approach to homozygosity mapping. HomozygosityMapper allows researchers to directly upload the genotype files produced by the major genotyping platforms as well as deep sequencing data. It detects stretches of homozygosity shared by the affected individuals and displays them graphically. Users can interactively inspect the underlying genotypes, manually refine these regions and eventually submit them to our candidate gene search engine GeneDistiller to identify the most promising candidate genes. Here, we present the new version of HomozygosityMapper. The most striking new feature is the support of Next Generation Sequencing *.vcf files as input. Upon users' requests, we have implemented the analysis of common experimental rodents as well as of important farm animals. Furthermore, we have extended the options for single families and loss of heterozygosity studies. Another new feature is the export of *.bed files for targeted enrichment of the potential disease regions for deep sequencing strategies. HomozygosityMapper also generates files for conventional linkage analyses which are already restricted to the possible disease regions, hence superseding CPU-intensive genome-wide analyses. HomozygosityMapper is freely available at http://www.homozygositymapper.org/.

Fire scar mapping in a southern African savanna

Treesearch

Andrew T. Hudak; Bruce H. Brockett; Carol A. Wessman

1998-01-01

Multitemporal principal components analyses (PCAs) of pre- and post-burn Landsat Thematic Mapper images were used to map fire scars in Madikwe Game Reserve (MGR), South Africa. Prior to MGR's inception in 1991, when the land was used for extensive cattle ranching, overgrazing and fire suppression lead to bush encroachment. Fire is currently being used to control...

Cosmic Dawn Intensity Mapper (CDIM): Instrument and Mission Design

NASA Astrophysics Data System (ADS)

Unwin, Stephen C.; CDIM Team

2018-01-01

CDIM is the Cosmic Dawn Intensity Mapper, one of the probe-class missions currently under study for NASA. A detailed Report from the study will be submitted to NASA and for consideration by the Decadal Survey. The flight system will comprise a wide-field cryogenic telescope with a large focal plane array providing complete coverage from optical through mid-IR. The system will be deployed to L2 or Earth-trailing orbit, to provide a stable thermal environment and allow extended observations of fields selected to be cross-correlated with deep surveys in other wavebands. Spectra with will be measured for every point in each target field, using linear variable filters (LVFs). These filters eliminate the need for a spectrometer in the focal plane. Spectra are built up through simple imaging of a series of telescope pointings separated by small angular offsets. This poster presents the initial concept for the instrument and mission design.

Identification of a New Spinel-Rich Lunar Rock Type by the Moon Mineralogy Mapper (M (sup 3))

NASA Technical Reports Server (NTRS)

Pieters, C. M.; Boardman, J.; Buratti, B.; Clark, R.; Combe, J. P.; Green, R.; Goswami, J. N.; Head, J. W., III; Hicks, M.; Isaacson, P.;

Preliminary spectral and geologic analysis of Landsat-4 Thematic Mapper data, Wind River Basin area, Wyoming

NASA Technical Reports Server (NTRS)

Conel, J. E.; Lang, H. R.; Paylor, E. D.; Alley, R. E.

1985-01-01

A Landsat-4 Thematic Mapper (TM) image of the Wind River Basin area in Wyoming is currently under analysis for stratigraphic and structural mapping and for assessment of spectral and spatial characteristics using visible, near infrared, and short wavelength infrared bands. To estimate the equivalent Lambertian surface reflectance, TM radiance data were calibrated to remove atmospheric and instrumental effects. Reflectance measurements for homogeneous natural and cultural targets were acquired about one year after data acquisition. Calibration data obtained during the analysis were used to calculate new gains and offsets to improve scanner response for earth science applications. It is shown that the principal component images calculated from the TM data were the result of linear transformations of ground reflectance. In images prepared from this transform, the separation of spectral classes was independent of systematic atmospheric and instrumental factors. Several examples of the processed images are provided.

Evaluation of Thematic Mapper Performance as Applied to Hydrocarbon Exploration. [Ontario, Canada; Cement, Oklahoma; and Death Valley, California

NASA Technical Reports Server (NTRS)

Everett, J. R.; Sheffield, C.; Dykstra, J.

1985-01-01

The role data from the first three LANDSAT satellites have in geologic exploration and their current level of acceptance is reviewed and the advantages of LANDSAT 4 TM data over MSS data are discussed. Specially enhanced Thematic Mapper imager can make a very significant contribution to the oil and gas and mineral exploration industries. The TM's increased spatial resolution enables the production of larger scale imagery, which greatly increases the amount of geomorphic and structural information interpretable. TM's greater spectral resolution, combined with the smaller, more homogeneous pixels, should enable a far greater confidence in mapping lithologies and detecting geobotanical anomalies from space. The results from its applications to hydrocarbon and mineral exploration promise to bring the majority of the geologic exploration community into that final stage of acceptance and routine application of the satellite data.

MAPPER: A personal computer map projection tool

NASA Technical Reports Server (NTRS)

Bailey, Steven A.

1993-01-01

MAPPER is a set of software tools designed to let users create and manipulate map projections on a personal computer (PC). The capability exists to generate five popular map projections. These include azimuthal, cylindrical, mercator, lambert, and sinusoidal projections. Data for projections are contained in five coordinate databases at various resolutions. MAPPER is managed by a system of pull-down windows. This interface allows the user to intuitively create, view and export maps to other platforms.

MetalMapper Demonstration at the Former Camp Beale, CA

DTIC Science & Technology

2012-03-01

2012 2 . REPORT TYPE 3. DATES COVERED 00-00-2012 to 00-00-2012 4. TITLE AND SUBTITLE MetalMapper Demonstration at the Former Camp Beale, CA 5a...SUMMARY REPORT MetalMapper Demonstration at the Former Camp Beale, CA March 2012 Herb Nelson Anne Andrews SERDP & ESTCP...advanced electromagnetic sensor was demonstrated at the former Camp Beale, CA in 2011. Camp Beale was also the site of the first demonstrations of

Hepatitis C Virus Resistance Testing in Genotype 1: The Changing Role in Clinical Utility.

PubMed

Molino, Suzanne; Martin, Michelle T

2017-09-01

To review the role and utility of baseline resistance testing with currently available and pipeline genotype 1 hepatitis C virus (HCV) treatment. Authors reviewed liver meeting abstracts for data on currently-available and pipeline genotype 1 retreatment regimens from January 1, 2015, to March 23, 2017. Additional trials were identified from a review of clinicaltrials.gov using the pipeline medication names. Authors identified reports of current and pipeline genotype 1 retreatment regimens. Seven references were clinical study results presented at the meetings of the American Association for the Study of Liver Diseases and the European Association for the Study of the Liver, and 2 studies were from clinicaltrials.gov . Retreatment trial data of currently available salvage regimens indicate that baseline NS5A resistance-associated substitutions (RASs) may decrease sustained virological response (SVR) rates when retreating with ledipasvir/sofosbuvir but are not affected when using elbasvir/grazoprevir + sofosbuvir + ribavirin, paritaprevir/ritonavir/ombitasvir + dasabuvir + sofosbuvir, or sofosbuvir/velpatasvir + ribavirin. Pipeline data indicate that baseline NS5A RASs do not affect SVR rates when retreating with sofosbuvir/velpatasvir/voxilaprevir or glecaprevir/pibrentasvir. Baseline resistance testing was used for decisional support for 3 clinical scenarios in patients with HCV genotype 1 infection at the time of manuscript submission. Pending the approval of 2 new direct-acting antiviral regimens in the third quarter of 2017, the rapidly evolving HCV treatment guidelines will likely reflect a decreased clinical utility for resistance testing.

One-Year Observations of Jupiter by the Jovian Infrared Auroral Mapper on Juno

NASA Astrophysics Data System (ADS)

Adriani, A.; Mura, A.; Bolton, S. J.; Connerney, J. E. P.; Levin, S.; Becker, H. N.; Bagenal, F.; Hansen, C. J.; Orton, G.; Gladstone, R.; Kurth, W. S.; Mauk, B.; Valek, P. W.

2017-12-01

The Jovian InfraRed Auroral Mapper (JIRAM) [1] on board the Juno [2,3] spacecraft, is equipped with an infrared camera and a spectrometer working in the spectral range 2-5 μm. JIRAM was built to study the infrared aurora of Jupiter as well as to map the planet's atmosphere in the 5 µm spectral region. The spectroscopic observations are used for studying clouds and measuring the abundance of some chemical species that have importance in the atmosphere's chemistry, microphysics and dynamics like water, ammonia and phosphine. During 2017 the instrument will operate during all 7 of Juno's Jupiter flybys. JIRAM has performed several observations of the polar regions of the planet addressing the aurora and the atmosphere. Unprecedented views of the aurora and the polar atmospheric structures have been obtained. We present a survey of the most significant observations that the instrument has performed during the current year. [1] Adriani A. et al., JIRAM, the Jovian Infrared Auroral Mapper. Space Sci. Rew., DOI 10.1007/s11214-014-0094-y, 2014. [2] Bolton S.J. et al., Jupiter's interior and deep atmosphere: The initial pole-to-pole passes with the Juno spacecraft. Science DOI: 10.1126/science.aal2108, 2017. [3] Connerney J. E.P. et al., Jupiter's magnetosphere and aurorae observed by the Juno spacecraft during its first polar orbits. Science, DOI: 10.1126/science.aam5928, 2017.

FMAP: Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies.

PubMed

Kim, Jiwoong; Kim, Min Soo; Koh, Andrew Y; Xie, Yang; Zhan, Xiaowei

2016-10-10

Given the lack of a complete and comprehensive library of microbial reference genomes, determining the functional profile of diverse microbial communities is challenging. The available functional analysis pipelines lack several key features: (i) an integrated alignment tool, (ii) operon-level analysis, and (iii) the ability to process large datasets. Here we introduce our open-sourced, stand-alone functional analysis pipeline for analyzing whole metagenomic and metatranscriptomic sequencing data, FMAP (Functional Mapping and Analysis Pipeline). FMAP performs alignment, gene family abundance calculations, and statistical analysis (three levels of analyses are provided: differentially-abundant genes, operons and pathways). The resulting output can be easily visualized with heatmaps and functional pathway diagrams. FMAP functional predictions are consistent with currently available functional analysis pipelines. FMAP is a comprehensive tool for providing functional analysis of metagenomic/metatranscriptomic sequencing data. With the added features of integrated alignment, operon-level analysis, and the ability to process large datasets, FMAP will be a valuable addition to the currently available functional analysis toolbox. We believe that this software will be of great value to the wider biology and bioinformatics communities.

DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data.

PubMed

Nagasaki, Hideki; Mochizuki, Takako; Kodama, Yuichi; Saruhashi, Satoshi; Morizaki, Shota; Sugawara, Hideaki; Ohyanagi, Hajime; Kurata, Nori; Okubo, Kousaku; Takagi, Toshihisa; Kaminuma, Eli; Nakamura, Yasukazu

2013-08-01

High-performance next-generation sequencing (NGS) technologies are advancing genomics and molecular biological research. However, the immense amount of sequence data requires computational skills and suitable hardware resources that are a challenge to molecular biologists. The DNA Data Bank of Japan (DDBJ) of the National Institute of Genetics (NIG) has initiated a cloud computing-based analytical pipeline, the DDBJ Read Annotation Pipeline (DDBJ Pipeline), for a high-throughput annotation of NGS reads. The DDBJ Pipeline offers a user-friendly graphical web interface and processes massive NGS datasets using decentralized processing by NIG supercomputers currently free of charge. The proposed pipeline consists of two analysis components: basic analysis for reference genome mapping and de novo assembly and subsequent high-level analysis of structural and functional annotations. Users may smoothly switch between the two components in the pipeline, facilitating web-based operations on a supercomputer for high-throughput data analysis. Moreover, public NGS reads of the DDBJ Sequence Read Archive located on the same supercomputer can be imported into the pipeline through the input of only an accession number. This proposed pipeline will facilitate research by utilizing unified analytical workflows applied to the NGS data. The DDBJ Pipeline is accessible at http://p.ddbj.nig.ac.jp/.

DDBJ Read Annotation Pipeline: A Cloud Computing-Based Pipeline for High-Throughput Analysis of Next-Generation Sequencing Data

PubMed Central

Nagasaki, Hideki; Mochizuki, Takako; Kodama, Yuichi; Saruhashi, Satoshi; Morizaki, Shota; Sugawara, Hideaki; Ohyanagi, Hajime; Kurata, Nori; Okubo, Kousaku; Takagi, Toshihisa; Kaminuma, Eli; Nakamura, Yasukazu

2013-01-01

High-performance next-generation sequencing (NGS) technologies are advancing genomics and molecular biological research. However, the immense amount of sequence data requires computational skills and suitable hardware resources that are a challenge to molecular biologists. The DNA Data Bank of Japan (DDBJ) of the National Institute of Genetics (NIG) has initiated a cloud computing-based analytical pipeline, the DDBJ Read Annotation Pipeline (DDBJ Pipeline), for a high-throughput annotation of NGS reads. The DDBJ Pipeline offers a user-friendly graphical web interface and processes massive NGS datasets using decentralized processing by NIG supercomputers currently free of charge. The proposed pipeline consists of two analysis components: basic analysis for reference genome mapping and de novo assembly and subsequent high-level analysis of structural and functional annotations. Users may smoothly switch between the two components in the pipeline, facilitating web-based operations on a supercomputer for high-throughput data analysis. Moreover, public NGS reads of the DDBJ Sequence Read Archive located on the same supercomputer can be imported into the pipeline through the input of only an accession number. This proposed pipeline will facilitate research by utilizing unified analytical workflows applied to the NGS data. The DDBJ Pipeline is accessible at http://p.ddbj.nig.ac.jp/. PMID:23657089

Rapid turn-around mapping of wildfires and disasters with airborne infrared imagery fro the new FireMapper® 2.0 and Oilmapper systems

Treesearch

James W. Hoffman; Lloyd L. Coulter; Philip J Riggan

2005-01-01

The new FireMapper® 2.0 and OilMapper airborne, infrared imaging systems operate in a "snapshot" mode. Both systems feature the real time display of single image frames, in any selected spectral band, on a daylight readable tablet PC. These single frames are displayed to the operator with full temperature calibration in color or grayscale renditions. A rapid...

CosmoQuest MoonMappers: Citizen Lunar Exploration

NASA Astrophysics Data System (ADS)

Gay, P. L.; Antonenko, I.; Robbins, S. J.; Bracey, G.; Lehan, C.; Moore, J.; Huang, D.

2012-09-01

The MoonMappers citizen science project is part of CosmoQuest, a virtual research facility designed for the public. CosmoQuest seeks to take the best aspects of a research center - research, seminars, journal clubs, and community discussions - and provide them to a community of citizen scientists through a virtual facility. MoonMappers was the first citizen science project within CosmoQuest, and is being used to define best practices in getting the public to effectively learn and do science.

Moon Mapper Looks Homeward

NASA Image and Video Library

2009-08-03

NASA Moon Minerology Mapper, a guest instrument onboard the Indian Space Research Organization Chandrayaan-1 mission to the moon, looks homeward. Australia is visible in the lower center of the image.

Monitoring landscape change for LANDFIRE using multi-temporal satellite imagery and ancillary data

USGS Publications Warehouse

Vogelmann, James E.; Kost, Jay R.; Tolk, Brian; Howard, Stephen M.; Short, Karen; Chen, Xuexia; Huang, Chengquan; Pabst, Kari; Rollins, Matthew G.

2011-01-01

LANDFIRE is a large interagency project designed to provide nationwide spatial data for fire management applications. As part of the effort, many 2000 vintage Landsat Thematic Mapper and Enhanced Thematic Mapper plus data sets were used in conjunction with a large volume of field information to generate detailed vegetation type and structure data sets for the entire United States. In order to keep these data sets current and relevant to resource managers, there was strong need to develop an approach for updating these products. We are using three different approaches for these purposes. These include: 1) updating using Landsat-derived historic and current fire burn information derived from the Monitoring Trends in Burn Severity project; 2) incorporating vegetation disturbance information derived from time series Landsat data analysis using the Vegetation Change Tracker; and 3) developing data products that capture subtle intra-state disturbance such as those related to insects and disease using either Landsat or the Moderate Resolution Imaging Spectroradiometer (MODIS). While no one single approach provides all of the land cover change and update information required, we believe that a combination of all three captures most of the disturbance conditions taking place that have relevance to the fire community.

Estuary Data Mapper (EDM)

EPA Pesticide Factsheets

Estuary Data Mapper is a tool for geospatial data discovery, visualization, and data download for any of the approximately 2,000 estuaries and associated watersheds in along the five US coastal regions

Automatic Generalizability Method of Urban Drainage Pipe Network Considering Multi-Features

NASA Astrophysics Data System (ADS)

Zhu, S.; Yang, Q.; Shao, J.

2018-05-01

Urban drainage systems are indispensable dataset for storm-flooding simulation. Given data availability and current computing power, the structure and complexity of urban drainage systems require to be simplify. However, till data, the simplify procedure mainly depend on manual operation that always leads to mistakes and lower work efficiency. This work referenced the classification methodology of road system, and proposed a conception of pipeline stroke. Further, length of pipeline, angle between two pipelines, the pipeline belonged road level and diameter of pipeline were chosen as the similarity criterion to generate the pipeline stroke. Finally, designed the automatic method to generalize drainage systems with the concern of multi-features. This technique can improve the efficiency and accuracy of the generalization of drainage systems. In addition, it is beneficial to the study of urban storm-floods.

An evaluation of the first four LANDSAT-D thematic mapper reflective sensors for monitoring vegetation: A comparison with other satellite sensor systems

NASA Technical Reports Server (NTRS)

Tucker, C. J.

1978-01-01

The first four LANDSAT-D thematic mapper sensors were evaluated and compared to: the return beam vidicon (RBV) and multispectral scanners (MSS) sensors from LANDSATS 1, 2, and 3; Colvocoresses' proposed 'operational LANDSAT' three band system; and the French SPOT three band system using simulation/intergration techniques and in situ collected spectral reflectance data. Sensors were evaluated by their ability to discriminate vegetation biomass, chlorophyll concentration, and leaf water content. The thematic mapper and SPOT bands were found to be superior in a spectral resolution context to the other three sensor systems for vegetational applications. Significant improvements are expected for most vegetational analyses from LANDSAT-D thematic mapper and SPOT imagery over MSS and RBV imagery.

Performance evaluation of high-strength steel pipelines for high-pressure gaseous hydrogen transportation.

DOT National Transportation Integrated Search

2009-01-01

Pipeline steels suffer significant degradation of their mechanical properties in high-pressure : gaseous hydrogen, including their fatigue cracking resistances to cyclic loading. The current : project work was conducted to produce fatigue crack growt...

Digital Imaging of Pipeline Mechanical Damage and Residual Stress

DOT National Transportation Integrated Search

2010-02-19

The purpose of this program was to enhance characterization of mechanical damage in pipelines through application of digital eddy current imaging. Lift-off maps can be used to develop quantitative representations of mechanical damage and magnetic per...

About Estuary Data Mapper (EDM)

EPA Pesticide Factsheets

Estuary Data Mapper is a tool for geospatial data discovery, visualization, and data download for any of the approximately 2,000 estuaries and associated watersheds in along the five US coastal regions.

Geometric error characterization and error budgets. [thematic mapper

NASA Technical Reports Server (NTRS)

Beyer, E.

1982-01-01

Procedures used in characterizing geometric error sources for a spaceborne imaging system are described using the LANDSAT D thematic mapper ground segment processing as the prototype. Software was tested through simulation and is undergoing tests with the operational hardware as part of the prelaunch system evaluation. Geometric accuracy specifications, geometric correction, and control point processing are discussed. Cross track and along track errors are tabulated for the thematic mapper, the spacecraft, and ground processing to show the temporal registration error budget in pixel (42.5 microrad) 90%.

MAPPER: high-throughput maskless lithography

NASA Astrophysics Data System (ADS)

Wieland, M. J.; de Boer, G.; ten Berge, G. F.; Jager, R.; van de Peut, T.; Peijster, J. J. M.; Slot, E.; Steenbrink, S. W. H. K.; Teepen, T. F.; van Veen, A. H. V.; Kampherbeek, B. J.

2009-03-01

Maskless electron beam lithography, or electron beam direct write, has been around for a long time in the semiconductor industry and was pioneered from the mid-1960s onwards. This technique has been used for mask writing applications as well as device engineering and in some cases chip manufacturing. However because of its relatively low throughput compared to optical lithography, electron beam lithography has never been the mainstream lithography technology. To extend optical lithography double patterning, as a bridging technology, and EUV lithography are currently explored. Irrespective of the technical viability of both approaches, one thing seems clear. They will be expensive [1]. MAPPER Lithography is developing a maskless lithography technology based on massively-parallel electron-beam writing with high speed optical data transport for switching the electron beams. In this way optical columns can be made with a throughput of 10-20 wafers per hour. By clustering several of these columns together high throughputs can be realized in a small footprint. This enables a highly cost-competitive alternative to double patterning and EUV alternatives. In 2007 MAPPER obtained its Proof of Lithography milestone by exposing in its Demonstrator 45 nm half pitch structures with 110 electron beams in parallel, where all the beams where individually switched on and off [2]. In 2008 MAPPER has taken a next step in its development by building several tools. The objective of building these tools is to involve semiconductor companies to be able to verify tool performance in their own environment. To enable this, the tools will have a 300 mm wafer stage in addition to a 110-beam optics column. First exposures at 45 nm half pitch resolution have been performed and analyzed. On the same wafer it is observed that all beams print and based on analysis of 11 beams the CD for the different patterns is within 2.2 nm from target and the CD uniformity for the different patterns is better than 2.8 nm.

Downloading and Installing Estuary Data Mapper (EDM)

EPA Pesticide Factsheets

Estuary Data Mapper is a tool for geospatial data discovery, visualization, and data download for any of the approximately 2,000 estuaries and associated watersheds in along the five US coastal regions

Frequent Questions about Estuary Data Mapper (EDM)

EPA Pesticide Factsheets

Estuary Data Mapper is a tool for geospatial data discovery, visualization, and data download for any of the approximately 2,000 estuaries and associated watersheds in along the five US coastal regions

Identification of missing variants by combining multiple analytic pipelines.

PubMed

Ren, Yingxue; Reddy, Joseph S; Pottier, Cyril; Sarangi, Vivekananda; Tian, Shulan; Sinnwell, Jason P; McDonnell, Shannon K; Biernacka, Joanna M; Carrasquillo, Minerva M; Ross, Owen A; Ertekin-Taner, Nilüfer; Rademakers, Rosa; Hudson, Matthew; Mainzer, Liudmila Sergeevna; Asmann, Yan W

2018-04-16

After decades of identifying risk factors using array-based genome-wide association studies (GWAS), genetic research of complex diseases has shifted to sequencing-based rare variants discovery. This requires large sample sizes for statistical power and has brought up questions about whether the current variant calling practices are adequate for large cohorts. It is well-known that there are discrepancies between variants called by different pipelines, and that using a single pipeline always misses true variants exclusively identifiable by other pipelines. Nonetheless, it is common practice today to call variants by one pipeline due to computational cost and assume that false negative calls are a small percent of total. We analyzed 10,000 exomes from the Alzheimer's Disease Sequencing Project (ADSP) using multiple analytic pipelines consisting of different read aligners and variant calling strategies. We compared variants identified by using two aligners in 50,100, 200, 500, 1000, and 1952 samples; and compared variants identified by adding single-sample genotyping to the default multi-sample joint genotyping in 50,100, 500, 2000, 5000 and 10,000 samples. We found that using a single pipeline missed increasing numbers of high-quality variants correlated with sample sizes. By combining two read aligners and two variant calling strategies, we rescued 30% of pass-QC variants at sample size of 2000, and 56% at 10,000 samples. The rescued variants had higher proportions of low frequency (minor allele frequency [MAF] 1-5%) and rare (MAF < 1%) variants, which are the very type of variants of interest. In 660 Alzheimer's disease cases with earlier onset ages of ≤65, 4 out of 13 (31%) previously-published rare pathogenic and protective mutations in APP, PSEN1, and PSEN2 genes were undetected by the default one-pipeline approach but recovered by the multi-pipeline approach. Identification of the complete variant set from sequencing data is the prerequisite of genetic association analyses. The current analytic practice of calling genetic variants from sequencing data using a single bioinformatics pipeline is no longer adequate with the increasingly large projects. The number and percentage of quality variants that passed quality filters but are missed by the one-pipeline approach rapidly increased with sample size.

Natural Gas Market Centers: A 2008 Update

EIA Publications

2009-01-01

This special report looks at the current status of market centers in today's natural gas marketplace, examining their role and their importance to natural gas shippers, pipelines, and others involved in the transportation of natural gas over the North American pipeline network.

NASA Moon Mineralogy Mapper

NASA Image and Video Library

2008-12-17

Different wavelengths of light provide new information about the Orientale Basin region of the moon in a composite image taken by NASA Moon Mineralogy Mapper, a guest instrument aboard the Indian Space Research Organization Chandrayaan-1 spacecraft.

Atmospheric modeling related to Thematic Mapper scan geometry. [atmospheric effects on satellite-borne photography of LANDSAT D

NASA Technical Reports Server (NTRS)

Malila, W. A.; Gleason, J. M.; Cicone, R. C.

1976-01-01

A simulation study was carried out to characterize atmospheric effects in LANDSAT-D Thematic Mapper data. In particular, the objective was to determine if any differences would result from using a linear vs. a conical scanning geometry. Insight also was gained about the overall effect of the atmosphere on Thematic Mapper signals, together with the effects of time of day. An added analysis was made of the geometric potential for direct specular reflections (sun glint). The ERIM multispectral system simulation model was used to compute inband Thematic Mapper radiances, taking into account sensor, atmospheric, and surface characteristics. Separate analyses were carried out for the thermal band and seven bands defined in the reflective spectral region. Reflective-region radiances were computed for 40 deg N, 0 deg, and 40 deg S latitudes; June, Mar., and Dec. days; and 9:30 and 11:00 AM solar times for both linear and conical scan modes. Also, accurate simulations of solar and viewing geometries throughout Thematic Mapper orbits were made. It is shown that the atmosphere plays an important role in determining Thematic Mapper radiances, with atmospheric path radiance being the major component of total radiances for short wavelengths and decreasing in importance as wavelength increases. Path radiance is shown to depend heavily on the direct radiation scattering angle and on haze content. Scan-angle-dependent variations were shown to be substantial, especially for the short-wavelength bands.

Literature Review: Theory and Application of In-Line Inspection Technologies for Oil and Gas Pipeline Girth Weld Defection

PubMed Central

Feng, Qingshan; Li, Rui; Nie, Baohua; Liu, Shucong; Zhao, Lianyu; Zhang, Hong

2016-01-01

Girth weld cracking is one of the main failure modes in oil and gas pipelines; girth weld cracking inspection has great economic and social significance for the intrinsic safety of pipelines. This paper introduces the typical girth weld defects of oil and gas pipelines and the common nondestructive testing methods, and systematically generalizes the progress in the studies on technical principles, signal analysis, defect sizing method and inspection reliability, etc., of magnetic flux leakage (MFL) inspection, liquid ultrasonic inspection, electromagnetic acoustic transducer (EMAT) inspection and remote field eddy current (RFDC) inspection for oil and gas pipeline girth weld defects. Additionally, it introduces the new technologies for composite ultrasonic, laser ultrasonic, and magnetostriction inspection, and provides reference for development and application of oil and gas pipeline girth weld defect in-line inspection technology. PMID:28036016

Virtual Instrumentation Corrosion Controller for Natural Gas Pipelines

NASA Astrophysics Data System (ADS)

Gopalakrishnan, J.; Agnihotri, G.; Deshpande, D. M.

2012-12-01

Corrosion is an electrochemical process. Corrosion in natural gas (methane) pipelines leads to leakages. Corrosion occurs when anode and cathode are connected through electrolyte. Rate of corrosion in metallic pipeline can be controlled by impressing current to it and thereby making it to act as cathode of corrosion cell. Technologically advanced and energy efficient corrosion controller is required to protect natural gas pipelines. Proposed virtual instrumentation (VI) based corrosion controller precisely controls the external corrosion in underground metallic pipelines, enhances its life and ensures safety. Designing and development of proportional-integral-differential (PID) corrosion controller using VI (LabVIEW) is carried out. When the designed controller is deployed at field, it maintains the pipe to soil potential (PSP) within safe operating limit and not entering into over/under protection zone. Horizontal deployment of this technique can be done to protect all metallic structure, oil pipelines, which need corrosion protection.

Impact of Stream Management Zones and Road Beautifying Buffers on Long-Term Fiber Supply in Georgia

Treesearch

Michal Zasada; Chris J. Cieszewski; Roger C. Lowe

2005-01-01

Streamside management zones (SMZs) and road beautifying buffers (RBBs) in Georgia have had an unknown impact on the available wood supply in the state. We used Forest Inventory and Analysis data, Landsat Thematic Mapper imagery, Gap Analysis Program and other geographic information system data to estimate the potential impact of SMZs and RBBs in the current and future...

Remote sensing of spring phenology in northeastern forests: A comparison of methods, field metrics and sources of uncertainty

Treesearch

Katharine White; Jennifer Pontius; Paul Schaberg

2014-01-01

Current remote sensing studies of phenology have been limited to coarse spatial or temporal resolution and often lack a direct link to field measurements. To address this gap, we compared remote sensing methodologies using Landsat Thematic Mapper (TM) imagery to extensive field measurements in a mixed northern hardwood forest. Five vegetation indices, five mathematical...

Tectonics of the central Andes

NASA Technical Reports Server (NTRS)

Bloom, Arthur L.; Isacks, Bryan L.; Fielding, Eric J.; Fox, Andrew N.; Gubbels, Timothy L.

1989-01-01

Acquisition of nearly complete coverage of Thematic Mapper data for the central Andes between about 15 to 34 degrees S has stimulated a comprehensive and unprecedented study of the interaction of tectonics and climate in a young and actively developing major continental mountain belt. The current state of the synoptic mapping of key physiographic, tectonic, and climatic indicators of the dynamics of the mountain/climate system are briefly reviewed.

Color Shaded-Relief and Surface-Classification Maps of the Fish Creek Area, Harrison Bay Quadrangle, Northern Alaska

USGS Publications Warehouse

Mars, John L.; Garrity, Christopher P.; Houseknecht, David W.; Amoroso, Lee; Meares, Donald C.

2007-01-01

Introduction The northeastern part of the National Petroleum Reserve in Alaska (NPRA) has become an area of active petroleum exploration during the past five years. Recent leasing and exploration drilling in the NPRA requires the U.S. Bureau of Land Management (BLM) to manage and monitor a variety of surface activities that include seismic surveying, exploration drilling, oil-field development drilling, construction of oil-production facilities, and construction of pipelines and access roads. BLM evaluates a variety of permit applications, environmental impact studies, and other documents that require rapid compilation and analysis of data pertaining to surface and subsurface geology, hydrology, and biology. In addition, BLM must monitor these activities and assess their impacts on the natural environment. Timely and accurate completion of these land-management tasks requires elevation, hydrologic, geologic, petroleum-activity, and cadastral data, all integrated in digital formats at a higher resolution than is currently available in nondigital (paper) formats. To support these land-management tasks, a series of maps was generated from remotely sensed data in an area of high petroleum-industry activity (fig. 1). The maps cover an area from approximately latitude 70?00' N. to 70?30' N. and from longitude 151?00' W. to 153?10' W. The area includes the Alpine oil field in the east, the Husky Inigok exploration well (site of a landing strip) in the west, many of the exploration wells drilled in NPRA since 2000, and the route of a proposed pipeline to carry oil from discovery wells in NPRA to the Alpine oil field. This map area is referred to as the 'Fish Creek area' after a creek that flows through the region. The map series includes (1) a color shaded-relief map based on 5-m-resolution data (sheet 1), (2) a surface-classification map based on 30-m-resolution data (sheet 2), and (3) a 5-m-resolution shaded relief-surface classification map that combines the shaded-relief and surface-classification data (sheet 3). Remote sensing datasets that were used to compile the maps include Landsat 7 Enhanced Thematic Mapper+ (ETM+), and interferometric synthetic aperture radar (IFSAR) data. In addition, a 1:250,000-scale geologic map of the Harrison Bay quadrangle, Alaska (Carter and Galloway, 1985, 2005) was used in conjunction with ETM+ and IFSAR data.

Multispectral scanner data applications evaluation. Volume 2: Sensor system study. [thematic mapper for earth resources application

NASA Technical Reports Server (NTRS)

1974-01-01

The optimization of a thematic mapper for earth resources application is discussed in terms of cost versus performance. Performance tradeoffs and the cost impact are analyzed. The instrument design and radiometric performance are also described. The feasibility of a radiative cooler design for a scanning spectral radiometer is evaluated along with the charge coupled multiplex operation. Criteria for balancing the cost and complexity of data acquisition instruments against the requirements of the user, and a pushbroom scanner version of the thematic mapper are presented.

Monitoring Global Precipitation through UCI CHRS's RainMapper App on Mobile Devices

NASA Astrophysics Data System (ADS)

Nguyen, P.; Huynh, P.; Braithwaite, D.; Hsu, K. L.; Sorooshian, S.

2014-12-01

The Water and Development Information for Arid Lands-a Global Network (G-WADI) Precipitation Estimation from Remotely Sensed Information using Artificial Neural Networks—Cloud Classification System (PERSIANN-CCS) GeoServer has been developed through a collaboration between the Center for Hydrometeorology and Remote Sensing (CHRS) at the University of California, Irvine (UCI) and the UNESCO's International Hydrological Program (IHP). G-WADI PERSIANN-CCS GeoServer provides near real-time high resolution (0.04o, approx 4km) global (60oN - 60oS) satellite precipitation estimated by the PERSIANN-CCS algorithm developed by the scientists at CHRS. The G-WADI PERSIANN-CCS GeoServer utilizes the open-source MapServer software from the University of Minnesota to provide a user-friendly web-based mapping and visualization of satellite precipitation data. Recent efforts have been made by the scientists at CHRS to provide free on-the-go access to the PERSIANN-CCS precipitation data through an application named RainMapper for mobile devices. RainMapper provides visualization of global satellite precipitation of the most recent 3, 6, 12, 24, 48 and 72-hour periods overlaid with various basemaps. RainMapper uses the Google maps application programing interface (API) and embedded global positioning system (GPS) access to better monitor the global precipitation data on mobile devices. Functionalities include using geographical searching with voice recognition technologies make it easy for the user to explore near real-time precipitation in a certain location. RainMapper also allows for conveniently sharing the precipitation information and visualizations with the public through social networks such as Facebook and Twitter. RainMapper is available for iOS and Android devices and can be downloaded (free) from the App Store and Google Play. The usefulness of RainMapper was demonstrated through an application in tracking the evolution of the recent Rammasun Typhoon over the Philippines in mid July 2014.

Discrimination of natural and cultivated vegetation using Thematic Mapper spectral data

NASA Technical Reports Server (NTRS)

Degloria, Stephen D.; Bernstein, Ralph; Dizenzo, Silvano

1986-01-01

The availability of high quality spectral data from the current suite of earth observation satellite systems offers significant improvements in the ability to survey and monitor food and fiber production on both a local and global basis. Current research results indicate that Landsat TM data when used in either digital or analog formats achieve higher land-cover classification accuracies than MSS data using either comparable or improved spectral bands and spatial resolution. A review of these quantitative results is presented for both natural and cultivated vegetation.

Diversifying the Community College CEO Pipeline

ERIC Educational Resources Information Center

Perrakis, Athena; Campbell, D. Michael; Antonaros, Mary

2009-01-01

The authors examine the current community college presidential pipeline and offer possible explanations for poor CEO representation from diverse populations. They explore a relationship between CEO satisfaction and diversity by testing whether CEO satisfaction is correlated to campus and administrative diversity. While data from the study…

Thematic mapper flight model preshipment review data package. Volume 4: Appendix. Part G: Miscellaneous system data

NASA Technical Reports Server (NTRS)

1982-01-01

Functional and design data from various thematic mapper subsystems are presented. Coarse focus, modulation transfer function, and shim requirements are addressed along with spectral matching and spatial coverage tests.

INPE LANDSAT-D thematic mapper computer compatible tape format specification

NASA Technical Reports Server (NTRS)

Parada, N. D. J. (Principal Investigator); Desouza, R. C. M.

1982-01-01

The format of the computer compatible tapes (CCT) which contain Thematic Mapper (TM) imagery data acquired from the LANDSAT D and D Prime satellites by the INSTITUTO DE PERSQUISAS ESPACIALS (CNPq-INPE/BRAZIL) is defined.

MyEnviroMapper

EPA Pesticide Factsheets

EnviroMapper for Envirofacts is a single point of access to select U.S. EPA environmental data. This Web site provides access to several EPA databases to provide you with information about environmental activities that may affect air, water, and l

Lightning-Related Indicators for National Climate Assessment (NCA) Studies

NASA Astrophysics Data System (ADS)

Koshak, W. J.

2017-12-01

With the recent advent of space-based lightning mappers [i.e., the Geostationary Lightning Mapper (GLM) on GOES-16, and the Lightning Imaging Sensor (LIS) on the International Space Station], improved investigations on the inter-relationships between lightning and climate are now possible and can directly support the goals of the National Climate Assessment (NCA) program. Lightning nitrogen oxides (LNOx) affect greenhouse gas concentrations such as ozone that influences changes in climate. Conversely, changes in climate (from any causes) can affect the characteristics of lightning (e.g., frequency, current amplitudes, multiplicity, polarity) that in turn leads to changes in lightning-caused impacts to humans (e.g., fatalities, injuries, crop/property damage, wildfires, airport delays, changes in air quality). This study discusses improvements to, and recent results from, the NASA/MSFC NCA Lightning Analysis Tool (LAT). It includes key findings on the development of different types of lightning flash energy indicators derived from space-based lightning observations, and demonstrates how these indicators can be used to estimate trends in LNOx across the continental US.

Study of spectral/radiometric characteristics of the Thematic Mapper for land use applications

NASA Technical Reports Server (NTRS)

Malila, W. A.; Metzler, M. D. (Principal Investigator)

1985-01-01

Progress during ERIM's tenth quarter of effort under the LANDSAT-4 and 5 Image Data Quality Assessment program for the Thematic Mapper is described. Coincident LANDSAT-4 and 5 fully corrected (CCT-PT) TM data are analyzed in more detail and revised band-by-band relationships between the two sensors derived. An analysis technique employing the matching of cumulative distributions is developed and used and is believed to offer advantages over the histogram matching procedure currently used to produce LANDSAT data. Multiplicative factors ranging from 0.987 to 1.145 and offsets ranging from -2.7 to -6.2 video quantum levels are required to cause LANDSAT-5 data to match LANDSAT-4 data values. Evidence of low level clipping is found in TM Bands 5 and 7 of LANDSAT-5 but not LANDSAT-4. Analysis of the information content of LANDSAT TM and MSS data is continued. Components of information loss are identified and quantified and the effects of coarsened quantization are explored.

The GOES-R GeoStationary Lightning Mapper (GLM)

NASA Technical Reports Server (NTRS)

Goodman, Steven J.; Blakeslee, Richard J.; Koshak, William J.; Mach, Douglas

2011-01-01

The Geostationary Operational Environmental Satellite (GOES-R) is the next series to follow the existing GOES system currently operating over the Western Hemisphere. Superior spacecraft and instrument technology will support expanded detection of environmental phenomena, resulting in more timely and accurate forecasts and warnings. Advancements over current GOES capabilities include a new capability for total lightning detection (cloud and cloud-to-ground flashes) from the Geostationary Lightning Mapper (GLM), and improved capability for the Advanced Baseline Imager (ABI). The Geostationary Lighting Mapper (GLM) will map total lightning activity (in-cloud and cloud-to-ground lighting flashes) continuously day and night with near-uniform spatial resolution of 8 km with a product refresh rate of less than 20 sec over the Americas and adjacent oceanic regions. This will aid in forecasting severe storms and tornado activity, and convective weather impacts on aviation safety and efficiency among a number of potential applications. In parallel with the instrument development (a prototype and 4 flight models), a GOES-R Risk Reduction Team and Algorithm Working Group Lightning Applications Team have begun to develop the Level 2 algorithms (environmental data records), cal/val performance monitoring tools, and new applications using GLM alone, in combination with the ABI, merged with ground-based sensors, and decision aids augmented by numerical weather prediction model forecasts. Proxy total lightning data from the NASA Lightning Imaging Sensor on the Tropical Rainfall Measuring Mission (TRMM) satellite and regional test beds are being used to develop the pre-launch algorithms and applications, and also improve our knowledge of thunderstorm initiation and evolution. An international field campaign planned for 2011-2012 will produce concurrent observations from a VHF lightning mapping array, Meteosat multi-band imagery, Tropical Rainfall Measuring Mission (TRMM) Lightning Imaging Sensor (LIS) overpasses, and related ground and in-situ lightning and meteorological measurements in the vicinity of Sao Paulo. These data will provide a new comprehensive proxy data set for algorithm and application development.

The Geostationary Lightning Mapper (GLM) for the GOES-R Series Next Generation Operational Environmental Satellite Constellation

NASA Technical Reports Server (NTRS)

Goodman, Steven J.; Blakeslee, Richard; Koshak, William; Petersen, Walter; Carey, Larry; Mach, Douglas; Buechler, Dennis; Bateman, Monte; McCaul, Eugene; Bruning, Eric;

Thematic Mapper. Volume 1: Calibration report flight model, LANDSAT 5

NASA Technical Reports Server (NTRS)

Cooley, R. C.; Lansing, J. C.

1984-01-01

The calibration of the Flight 1 Model Thematic Mapper is discussed. Spectral response, scan profile, coherent noise, line spread profiles and white light leaks, square wave response, radiometric calibration, and commands and telemetry are specifically addressed.

Thematic mapper flight model preshipment review data package. Volume 2, part C: Subsystem data

NASA Technical Reports Server (NTRS)

1982-01-01

Reference lists are provided to acceptance data for each of the major subsystems of the thematic mapper. Configuration reports, lists and copies of all failure reports, and requests for deviation/waiver are included.

75 FR 21503 - Transferring Certain Enforcement Hotline Matters to the Dispute Resolution Service

Federal Register 2010, 2011, 2012, 2013, 2014

2010-04-26

.... Currently, the Commission's regulations require that natural gas pipeline companies provide contact... project under the Natural Gas Act. In practice, the Enforcement Hotline also attempts to resolve disputes between individuals and natural gas pipeline companies on all certificated construction projects under the...

Natural Gas in the Rocky Mountains: Developing Infrastructure

EIA Publications

2007-01-01

This Supplement to the Energy Information Administration's Short-Term Energy Outlook analyzes current natural gas production, pipeline and storage infrastructure in the Rocky Mountains, as well as prospective pipeline projects in these states. The influence of these factors on regional prices and price volatility is examined.

Applicability of interferometric SAR technology to ground movement and pipeline monitoring

NASA Astrophysics Data System (ADS)

Grivas, Dimitri A.; Bhagvati, Chakravarthy; Schultz, B. C.; Trigg, Alan; Rizkalla, Moness

1998-03-01

This paper summarizes the findings of a cooperative effort between NOVA Gas Transmission Ltd. (NGTL), the Italian Natural Gas Transmission Company (SNAM), and Arista International, Inc., to determine whether current remote sensing technologies can be utilized to monitor small-scale ground movements over vast geographical areas. This topic is of interest due to the potential for small ground movements to cause strain accumulation in buried pipeline facilities. Ground movements are difficult to monitor continuously, but their cumulative effect over time can have a significant impact on the safety of buried pipelines. Interferometric synthetic aperture radar (InSAR or SARI) is identified as the most promising technique of those considered. InSAR analysis involves combining multiple images from consecutive passes of a radar imaging platform. The resulting composite image can detect changes as small as 2.5 to 5.0 centimeters (based on current analysis methods and radar satellite data of 5 centimeter wavelength). Research currently in progress shows potential for measuring ground movements as small as a few millimeters. Data needed for InSAR analysis is currently commercially available from four satellites, and additional satellites are planned for launch in the near future. A major conclusion of the present study is that InSAR technology is potentially useful for pipeline integrity monitoring. A pilot project is planned to test operational issues.

Pipeline transport and simultaneous saccharification of corn stover.

PubMed

Kumar, Amit; Cameron, Jay B; Flynn, Peter C

2005-05-01

Pipeline transport of corn stover delivered by truck from the field is evaluated against a range of truck transport costs. Corn stover transported by pipeline at 20% solids concentration (wet basis) or higher could directly enter an ethanol fermentation plant, and hence the investment in the pipeline inlet end processing facilities displaces comparable investment in the plant. At 20% solids, pipeline transport of corn stover costs less than trucking at capacities in excess of 1.4 M drytonnes/yr when compared to a mid range of truck transport cost (excluding any credit for economies of scale achieved in the ethanol fermentation plant from larger scale due to multiple pipelines). Pipelining of corn stover gives the opportunity to conduct simultaneous transport and saccharification (STS). If current enzymes are used, this would require elevated temperature. Heating of the slurry for STS, which in a fermentation plant is achieved from waste heat, is a significant cost element (more than 5 cents/l of ethanol) if done at the pipeline inlet unless waste heat is available, for example from an electric power plant located adjacent to the pipeline inlet. Heat loss in a 1.26 m pipeline carrying 2 M drytonnes/yr is about 5 degrees C at a distance of 400 km in typical prairie clay soils, and would not likely require insulation; smaller pipelines or different soil conditions might require insulation for STS. Saccharification in the pipeline would reduce the need for investment in the fermentation plant, saving about 0.2 cents/l of ethanol. Transport of corn stover in multiple pipelines offers the opportunity to develop a large ethanol fermentation plant, avoiding some of the diseconomies of scale that arise from smaller plants whose capacities are limited by issues of truck congestion.

Natural language processing pipelines to annotate BioC collections with an application to the NCBI disease corpus

PubMed Central

Comeau, Donald C.; Liu, Haibin; Islamaj Doğan, Rezarta; Wilbur, W. John

2014-01-01

BioC is a new format and associated code libraries for sharing text and annotations. We have implemented BioC natural language preprocessing pipelines in two popular programming languages: C++ and Java. The current implementations interface with the well-known MedPost and Stanford natural language processing tool sets. The pipeline functionality includes sentence segmentation, tokenization, part-of-speech tagging, lemmatization and sentence parsing. These pipelines can be easily integrated along with other BioC programs into any BioC compliant text mining systems. As an application, we converted the NCBI disease corpus to BioC format, and the pipelines have successfully run on this corpus to demonstrate their functionality. Code and data can be downloaded from http://bioc.sourceforge.net. Database URL: http://bioc.sourceforge.net PMID:24935050

Perform MetalMapper Classification Treatability Investigations as Part of Remedial Investigation/Feasibility Studies: Live Site Demonstrations: Pueblo Chemical Depot

DTIC Science & Technology

2016-03-14

DoD Department of Defense EMI electromagnetic induction ESTCP Environmental Security Technology Certification Program ft. foot GPS global...three primary objectives:  Test and validate detection and discrimination capabilities of a currently available advanced electromagnetic induction ... induction (EMI) sensors in dynamic and static data acquisition modes and associated analysis software. To achieve these objectives, a controlled test was

Stratifying FIA Ground Plots Using A 3-Year Old MRLC Forest Cover Map and Current TM Derived Variables Selected By "Decision Tree" Classification

Treesearch

Michael Hoppus; Stan Arner; Andrew Lister

2001-01-01

A reduction in variance for estimates of forest area and volume in the state of Connecticut was accomplished by stratifying FIA ground plots using raw, transformed and classified Landsat Thematic Mapper (TM) imagery. A US Geological Survey (USGS) Multi-Resolution Landscape Characterization (MRLC) vegetation cover map for Connecticut was used to produce a forest/non-...

An overview of the thematic mapper geometric correction system

NASA Technical Reports Server (NTRS)

Beyer, E. P.

1983-01-01

Geometric accuracy specifications for LANDSAT 4 are reviewed and the processing concepts which form the basis of NASA's thematic mapper geometric correction system are summarized for both the flight and ground segments. The flight segment includes the thematic mapper instrument, attitude measurement devices, attitude control, and ephemeris processing. For geometric correction the ground segment uses mirror scan correction data, payload correction data, and control point information to determine where TM detector samples fall on output map projection systems. Then the raw imagery is reformatted and resampled to produce image samples on a selected output projection grid system.

Evaluation of spatial, radiometric and spectral Thematic Mapper performance for coastal studies

NASA Technical Reports Server (NTRS)

Klemas, V.; Ackleson, S. G.; Hardisky, M. A.

1985-01-01

On 31 March 1983, the University of Delaware's Center for Remote Sensing initiated a study to evaluate the spatial, radiometric and spectral performance of the LANDSAT Thematic Mapper for coastal and estuarine studies. The investigation was supported by Contract NAS5-27580 from the NASA Goddard Space Flight Center. The research was divided into three major subprojects: (1) a comparison of LANDSAT TM to MSS imagery for detecting submerged aquatic vegetation in Chesapeake Bay; (2) remote sensing of submerged aquatic vegetation - a radiative transfer approach; and (3) remote sensing of coastal wetland biomass using Thematic Mapper wavebands.

PrimerMapper: high throughput primer design and graphical assembly for PCR and SNP detection

PubMed Central

O’Halloran, Damien M.

2016-01-01

Primer design represents a widely employed gambit in diverse molecular applications including PCR, sequencing, and probe hybridization. Variations of PCR, including primer walking, allele-specific PCR, and nested PCR provide specialized validation and detection protocols for molecular analyses that often require screening large numbers of DNA fragments. In these cases, automated sequence retrieval and processing become important features, and furthermore, a graphic that provides the user with a visual guide to the distribution of designed primers across targets is most helpful in quickly ascertaining primer coverage. To this end, I describe here, PrimerMapper, which provides a comprehensive graphical user interface that designs robust primers from any number of inputted sequences while providing the user with both, graphical maps of primer distribution for each inputted sequence, and also a global assembled map of all inputted sequences with designed primers. PrimerMapper also enables the visualization of graphical maps within a browser and allows the user to draw new primers directly onto the webpage. Other features of PrimerMapper include allele-specific design features for SNP genotyping, a remote BLAST window to NCBI databases, and remote sequence retrieval from GenBank and dbSNP. PrimerMapper is hosted at GitHub and freely available without restriction. PMID:26853558

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hansen, E.A.; Smed, P.F.; Bryndum, M.B.

The paper describes the numerical program, PIPESIN, that simulates the behavior of a pipeline placed on an erodible seabed. PIPEline Seabed INteraction from installation until a stable pipeline seabed configuration has occurred is simulated in the time domain including all important physical processes. The program is the result of the joint research project, ``Free Span Development and Self-lowering of Offshore Pipelines`` sponsored by EU and a group of companies and carried out by the Danish Hydraulic Institute and Delft Hydraulics. The basic modules of PIPESIN are described. The description of the scouring processes has been based on and verified throughmore » physical model tests carried out as part of the research project. The program simulates a section of the pipeline (typically 500 m) in the time domain, the main input being time series of the waves and current. The main results include predictions of the onset of free spans, their length distribution, their variation in time, and the lowering of the pipeline as function of time.« less

Design and analysis of FBG based sensor for detection of damage in oil and gas pipelines for safety of marine life

NASA Astrophysics Data System (ADS)

Bedi, Amna; Kothari, Vaishali; Kumar, Santosh

2018-02-01

The under laid gas and oil pipelines on the seafloor are prone to various disturbances like seismic movements of the sea bed, oceanic currents, tsunamis. These factors tend to damage such pipelines connecting different locations of the world dependent on these pipelines for their day-to-day use of oil and natural gas. If damaged, the oil spills in the water bodies cause grave loss to marine life along with serious economic issues. It is not feasible to monitor the undersea pipelines manually because of the huge seafloor depth. For timely detection of such damage, a new technique using optical Fiber Bragg grating (FBG) sensors and its installation has been given in this work. The idea of an FBG sensor for detecting damage in pipeline structure based on the acoustic emission has been worked out. The numerical calculation has been done based on the fundamental of strain measurement and the output has been simulated using MATLAB.

Natural gas and CO2 price variation: impact on the relative cost-efficiency of LNG and pipelines.

PubMed

Ulvestad, Marte; Overland, Indra

2012-06-01

THIS ARTICLE DEVELOPS A FORMAL MODEL FOR COMPARING THE COST STRUCTURE OF THE TWO MAIN TRANSPORT OPTIONS FOR NATURAL GAS: liquefied natural gas (LNG) and pipelines. In particular, it evaluates how variations in the prices of natural gas and greenhouse gas emissions affect the relative cost-efficiency of these two options. Natural gas is often promoted as the most environmentally friendly of all fossil fuels, and LNG as a modern and efficient way of transporting it. Some research has been carried out into the local environmental impact of LNG facilities, but almost none into aspects related to climate change. This paper concludes that at current price levels for natural gas and CO 2 emissions the distance from field to consumer and the volume of natural gas transported are the main determinants of transport costs. The pricing of natural gas and greenhouse emissions influence the relative cost-efficiency of LNG and pipeline transport, but only to a limited degree at current price levels. Because more energy is required for the LNG process (especially for fuelling the liquefaction process) than for pipelines at distances below 9100 km, LNG is more exposed to variability in the price of natural gas and greenhouse gas emissions up to this distance. If the prices of natural gas and/or greenhouse gas emission rise dramatically in the future, this will affect the choice between pipelines and LNG. Such a price increase will be favourable for pipelines relative to LNG.

Natural gas and CO2 price variation: impact on the relative cost-efficiency of LNG and pipelines

PubMed Central

Ulvestad, Marte; Overland, Indra

2012-01-01

This article develops a formal model for comparing the cost structure of the two main transport options for natural gas: liquefied natural gas (LNG) and pipelines. In particular, it evaluates how variations in the prices of natural gas and greenhouse gas emissions affect the relative cost-efficiency of these two options. Natural gas is often promoted as the most environmentally friendly of all fossil fuels, and LNG as a modern and efficient way of transporting it. Some research has been carried out into the local environmental impact of LNG facilities, but almost none into aspects related to climate change. This paper concludes that at current price levels for natural gas and CO2 emissions the distance from field to consumer and the volume of natural gas transported are the main determinants of transport costs. The pricing of natural gas and greenhouse emissions influence the relative cost-efficiency of LNG and pipeline transport, but only to a limited degree at current price levels. Because more energy is required for the LNG process (especially for fuelling the liquefaction process) than for pipelines at distances below 9100 km, LNG is more exposed to variability in the price of natural gas and greenhouse gas emissions up to this distance. If the prices of natural gas and/or greenhouse gas emission rise dramatically in the future, this will affect the choice between pipelines and LNG. Such a price increase will be favourable for pipelines relative to LNG. PMID:24683269

Thematic mapper flight model preshipment review data package. Volume 4: Appendix. Part D: Focal plane assembly data

NASA Technical Reports Server (NTRS)

1982-01-01

The data obtained for the Band 1 thematic mapper flight full band assembly (P/N 50797) are summarized. The data were collected from half band, post amplifier, and full band acceptance test data records.

Spectroradiometric calibration of the Thematic Mapper and multispectral scanner system

NASA Technical Reports Server (NTRS)

Palmer, J. (Principal Investigator); Slater, P.

1984-01-01

Results of an analysis that relates TM saturation level to ground reflectance, calendar date, latitude, and atmospheric conditions are reported. The determination of the spectral reflectance at the entrance pupil of the LANDSAT 4 pupil of the thematic mapper is described.

LANDSAT-4 Science Characterization Early Results. Volume 3, Part 2: Thematic Mapper (TM)

NASA Technical Reports Server (NTRS)

Barker, J. L. (Editor)

1985-01-01

The calibration of the LANDSAT 4 thematic mapper is discussed as well as the atmospheric, radiometric, and geometric accuracy and correction of data obtained with this sensor. Methods are given for assessing TM band to band registration.

Spectral analysis of pipe-to-soil potentials with variations of the Earth's magnetic field in the Australian region

NASA Astrophysics Data System (ADS)

Marshall, R. A.; Waters, C. L.; Sciffer, M. D.

2010-05-01

Long, steel pipelines used to transport essential resources such as gas and oil are potentially vulnerable to space weather. In order to inhibit corrosion, the pipelines are usually coated in an insulating material and maintained at a negative electric potential with respect to Earth using cathodic protection units. During periods of enhanced geomagnetic activity, potential differences between the pipeline and surrounding soil (referred to as pipe-to-soil potentials (PSPs)) may exhibit large voltage swings which place the pipeline outside the recommended "safe range" and at an increased risk of corrosion. The PSP variations result from the "geoelectric" field at the Earth's surface and associated geomagnetic field variations. Previous research investigating the relationship between the surface geoelectric field and geomagnetic source fields has focused on the high-latitude regions where line currents in the ionosphere E region are often the assumed source of the geomagnetic field variations. For the Australian region Sq currents also contribute to the geomagnetic field variations and provide the major contribution during geomagnetic quiet times. This paper presents the results of a spectral analysis of PSP measurements from four pipeline networks from the Australian region with geomagnetic field variations from nearby magnetometers. The pipeline networks extend from Queensland in the north of Australia to Tasmania in the south and provide PSP variations during both active and quiet geomagnetic conditions. The spectral analyses show both consistent phase and amplitude relationships across all pipelines, even for large separations between magnetometer and PSP sites and for small-amplitude signals. Comparison between the observational relationships and model predictions suggests a method for deriving a geoelectric field proxy suitable for indicating PSP-related space weather conditions.

Forest cover from Landsat Thematic Mapper data for use in the Catahoula anger District geographic information system.

Treesearch

David L. Evans

1994-01-01

A forest cover classification of the Kisatchie National Forest, Catahoula Ranger district, was performed with Landsat Thematic Mapper data. Data base retrievals and map products from this analysis demonstrated use of Landsat for forest management decisions.

Nitrogen Source and Loading Data for EPA Estuary Data Mapper

EPA Science Inventory

Nitrogen source and loading data have been compiled and aggregated at the scale of estuaries and associated watersheds of the conterminous United States, using the spatial framework in EPA's Estuary Data Mapper (EDM) to provide system boundaries. Original sources of data include...

Development of the Lunar Polar Hydrogen Mapper Mission

NASA Astrophysics Data System (ADS)

Hardgrove, C.; Bell, J. F.; Starr, R.; Colaprete, A.; Drake, D.; Lazbin, I.; West, S.; Johnson, E. B.; Christian, J.; Heffern, L.; Genova, A.; Dunham, D.; Williams, B.; Nelson, D.; Puckett, S.; Babuscia, A.; Scowen, P.; Kerner, H.; Amzler, R. J.

2018-04-01

The Lunar Polar Hydrogen Mapper is a 6U CubeSat mission launching on SLS EM-1. The spacecraft will orbit at a low altitude perlune over the lunar south pole and carries a miniature neutron spectrometer to map small scale hydrogen enrichments in PSRs.

Thematic mapper protoflight model preshipment review data package. Volume 4: Appendix. Part A: Multiplexer data, book 1

NASA Technical Reports Server (NTRS)

1982-01-01

Data from the final performance tests of the thematic mapper flight model multiplexer at ambient temperature are presented. Results cover the power supply, the input buffer, and the A/D threshold for bands 1 through 4.

Star sensor/mapper with a self deployable, high-attenuation light shade for SAS-B

NASA Technical Reports Server (NTRS)

Schenkel, F. W.; Finkel, A.

1972-01-01

A star sensor/mapper to determine positional data for the small astronomy satellites was tested to detect stars of plus 4 visual magnitude. It utilizes two information channels with memory so that it can be used with a low-data-rate telemetry system. One channel yields star amplitude information; the other yields the time of star occurrence as the star passes across an N-slit reticle/photomultiplier detector system. Some of the features of the star sensor/mapper are its low weight of 6.5 pounds, low power consumption of 0.4 watt, bandwidth switching to match the satellite spin rate, optical equalization of sensitivity over the 5-by-10 deg field of view, and self-deployable sunshade. The attitude determination accuracy is 3 arc minutes. This is determined by such parameters as the reticle configuration, optical train, and telemetry readout. The optical and electronic design of the star sensor/mapper, its expansion capabilities, and its features are discussed.

The presence of opportunistic pathogens, Legionella spp., L. pneumophila and Mycobacterium avium complex, in South Australian reuse water distribution pipelines.

PubMed

Whiley, H; Keegan, A; Fallowfield, H; Bentham, R

2015-06-01

Water reuse has become increasingly important for sustainable water management. Currently, its application is primarily constrained by the potential health risks. Presently there is limited knowledge regarding the presence and fate of opportunistic pathogens along reuse water distribution pipelines. In this study opportunistic human pathogens Legionella spp., L. pneumophila and Mycobacterium avium complex were detected using real-time polymerase chain reaction along two South Australian reuse water distribution pipelines at maximum concentrations of 10⁵, 10³ and 10⁵ copies/mL, respectively. During the summer period of sampling the concentration of all three organisms significantly increased (P < 0.05) along the pipeline, suggesting multiplication and hence viability. No seasonality in the decrease in chlorine residual along the pipelines was observed. This suggests that the combination of reduced chlorine residual and increased water temperature promoted the presence of these opportunistic pathogens.

Prokaryotic Contig Annotation Pipeline Server: Web Application for a Prokaryotic Genome Annotation Pipeline Based on the Shiny App Package.

PubMed

Park, Byeonghyeok; Baek, Min-Jeong; Min, Byoungnam; Choi, In-Geol

2017-09-01

Genome annotation is a primary step in genomic research. To establish a light and portable prokaryotic genome annotation pipeline for use in individual laboratories, we developed a Shiny app package designated as "P-CAPS" (Prokaryotic Contig Annotation Pipeline Server). The package is composed of R and Python scripts that integrate publicly available annotation programs into a server application. P-CAPS is not only a browser-based interactive application but also a distributable Shiny app package that can be installed on any personal computer. The final annotation is provided in various standard formats and is summarized in an R markdown document. Annotation can be visualized and examined with a public genome browser. A benchmark test showed that the annotation quality and completeness of P-CAPS were reliable and compatible with those of currently available public pipelines.

Natural language processing pipelines to annotate BioC collections with an application to the NCBI disease corpus.

PubMed

Comeau, Donald C; Liu, Haibin; Islamaj Doğan, Rezarta; Wilbur, W John

2014-01-01

BioC is a new format and associated code libraries for sharing text and annotations. We have implemented BioC natural language preprocessing pipelines in two popular programming languages: C++ and Java. The current implementations interface with the well-known MedPost and Stanford natural language processing tool sets. The pipeline functionality includes sentence segmentation, tokenization, part-of-speech tagging, lemmatization and sentence parsing. These pipelines can be easily integrated along with other BioC programs into any BioC compliant text mining systems. As an application, we converted the NCBI disease corpus to BioC format, and the pipelines have successfully run on this corpus to demonstrate their functionality. Code and data can be downloaded from http://bioc.sourceforge.net. Database URL: http://bioc.sourceforge.net. © The Author(s) 2014. Published by Oxford University Press.

Attributions, Influences and Outcomes for Underrepresented and Disadvantaged Participants of a Medical Sciences Enrichment Pipeline Program

ERIC Educational Resources Information Center

Pinckney, Charlyene Carol

2014-01-01

The current study was undertaken to examine the effectiveness of the Rowan University-School of Osteopathic Medicine - Summer Pre-Medical Research and Education Program (Summer PREP), a postsecondary medical sciences enrichment pipeline program for under-represented and disadvantaged students. Thirty-four former program participants were surveyed…

78 FR 32090 - Filing, Indexing, and Service Requirements for Oil Pipelines

Federal Register 2010, 2011, 2012, 2013, 2014

2013-05-29

...-ministerial tariff changes without filing to withdraw any pending proposal and making a new tariff filing... current rates and the proposed ``new'' rates in a cover letter when making a tariff change and oil... that all tariffs and tariff revisions and rate change applications for oil pipelines and other...

78 FR 23972 - Pipeline Safety: Information Collection Activities

Federal Register 2010, 2011, 2012, 2013, 2014

2013-04-23

... reference of the industry standard on leak detection. This recordkeeping requirement supports pipeline... will date stamp the postcard prior to returning it to you via the U.S. mail. Please note that due to... consequence events: Currently, if a release is at least 5 gallons but is less than 5 barrels with no...

Building a Bridge or Digging a Pipeline? Clinical Data Mining in Evidence-Informed Knowledge Building

ERIC Educational Resources Information Center

Epstein, Irwin

2015-01-01

Challenging the "bridge metaphor" theme of this conference, this article contends that current practice-research integration strategies are more like research-to-practice "pipelines." The purpose of this article is to demonstrate the potential of clinical data-mining studies conducted by practitioners, practitioner-oriented PhD…

Cathodic protection of a remote river pipeline

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martin, B.A.

1994-03-01

The 261-km long 500-mm diam Kutubu pipeline, which runs through dense jungle swamps in Papua, New Guinea, was built for Chevron Niugini to transport oil from the remote Kutubu oil production facility in the Southern Highlands to an offshore loading facility. The pipeline was laid with a section in the bed of a wide, fast-flowing river. This section was subject to substantial telluric effects and current density variations from changing water resistivities. The cathodic protection system's effectiveness was monitored by coupon off'' potentials and required an innovative approach.

Variations in thematic mapper spectra of soil related to tillage and crop residue management - Initial evaluation

NASA Technical Reports Server (NTRS)

Seeley, M. W.; Ruschy, D. L.; Linden, D. R.

1983-01-01

A cooperative research project was initiated in 1982 to study differences in thematic mapper spectral characteristics caused by variable tillage and crop residue practices. Initial evaluations of radiometric data suggest that spectral separability of variably tilled soils can be confounded by moisture and weathering effects. Separability of bare tilled soils from those with significant amounts of corn residue is enhanced by wet conditions, but still possible under dry conditions when recent tillage operations have occurred. In addition, thematic mapper data may provide an alternative method to study the radiant energy balance at the soil surface in conjunction with variable tillage systems.

The Mars mapper science and mission planning tool

NASA Technical Reports Server (NTRS)

Lo, Martin W.

1993-01-01

The Mars Mapper Program (MOm) is an interactive tool for science and mission design developed for the Mars Observer Mission (MO). MOm is a function of the Planning and Sequencing Element of the MO Ground Data System. The primary users of MOm are members of the science and mission planning teams. Using MOm, the user can display digital maps of Mars in various projections and resolutions ranging from 1 to 256 pixels per degree squared. The user can overlay the maps with ground tracks of the MO spacecraft (S/C) and footprints and swaths of the various instruments on-board the S/C. Orbital and instrument geometric parameters can be computed on demand and displayed on the digital map or plotted in XY-plots. The parameter data can also be saved into files for other uses. MOm is divided into 3 major processes: Generator, Mapper, Plotter. The Generator Process is the main control which spawns all other processes. The processes communicate via sockets. At any one time, only 1 copy of MOm may operate on the system. However, up to 5 copies of each of the major processes may be invoked from the Generator. MOm is developed on the Sun SPARCStation 2GX with menu driven graphical user interface (GUI). The map window and its overlays are mouse-sensitized to permit on-demand calculations of various parameters along an orbit. The program is currently under testing and will be delivered to the MO Mission System Configuration Management for distribution to the MO community in 3/93.

Estuary Data Mapper: A virtual portal to coastal data informing environmental management decisions

EPA Science Inventory

The Estuary Data Mapper (EDM) is a free, interactive graphical application under development at the US EPA that allows environmental researchers and managers to quickly and easily retrieve, view and save subsets of online US coastal estuary-related data. Accessible data include ...

LAND COVER MAPPING IN AN AGRICULTURAL SETTING USING MULTISEASONAL THEMATIC MAPPER DATA

EPA Science Inventory

A multiseasonal Landsat Thematic Mapper (TM) data set consisting of five image dates from a single year was used to characterize agricultural and related land cover in the Willamette River Basin (WRB) of western Oregon. Image registration was accomplished using an automated grou...

EPA Recovery Mapper

EPA Pesticide Factsheets

The EPA Recovery Mapper is an Internet interactive mapping application that allows users to discover information about every American Recovery and Reinvestment Act (ARRA) award that EPA has funded for six programs. By integrating data reported by the recipients of Recovery Act funding and data created by EPA, this application delivers a level of transparency and public accessibility to users interested in EPA's use of Recovery Act monies. The application is relatively easy to use and builds on the same mapping model as Google, Bing, MapQuest and other commonly used mapping interfaces. EPA Recovery Mapper tracks each award made by each program and gives basic Quick Facts information for each award including award name, location, award date, dollar amounts and more. Data Summaries for each EPA program or for each state are provided displaying dollars for Total Awarded, Total Received (Paid), and Total Jobs This Quarter by Recovery for the latest quarter of data released by Recovery.gov. The data are reported to the government and EPA four times a year by the award recipients. The latest quarterly report will always be displayed in the EPA Recovery Mapper. In addition, the application provides many details about each award. Users will learn more about how to access and interpret these data later in this document. Data shown in the EPA Recovery Mapper are derived from information reported back to FederalReporting.gov from the recipients of Recovery Act funding. EPA

Gathering pipeline methane emissions in Fayetteville shale pipelines and scoping guidelines for future pipeline measurement campaigns

DOE PAGES

Zimmerle, Daniel J.; Pickering, Cody K.; Bell, Clay S.; ...

2017-11-24

Gathering pipelines, which transport gas from well pads to downstream processing, are a sector of the natural gas supply chain for which little measured methane emissions data are available. This study performed leak detection and measurement on 96 km of gathering pipeline and the associated 56 pigging facilities and 39 block valves. The study found one underground leak accounting for 83% (4.0 kg CH 4/hr) of total measured emissions. Methane emissions for the 4684 km of gathering pipeline in the study area were estimated at 402 kg CH 4/hr [95 to 1065 kg CH 4/hr, 95% CI], or 1% [0.2%more » to 2.6%] of all methane emissions measured during a prior aircraft study of the same area. Emissions estimated by this study fall within the uncertainty range of emissions estimated using emission factors from EPA's 2015 Greenhouse Inventory and study activity estimates. While EPA's current inventory is based upon emission factors from distribution mains measured in the 1990s, this study indicates that using emission factors from more recent distribution studies could significantly underestimate emissions from gathering pipelines. To guide broader studies of pipeline emissions, we also estimate the fraction of the pipeline length within a basin that must be measured to constrain uncertainty of pipeline emissions estimates to within 1% of total basin emissions. The study provides both substantial insight into the mix of emission sources and guidance for future gathering pipeline studies, but since measurements were made in a single basin, the results are not sufficiently representative to provide methane emission factors at the regional or national level.« less

Gathering pipeline methane emissions in Fayetteville shale pipelines and scoping guidelines for future pipeline measurement campaigns

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zimmerle, Daniel J.; Pickering, Cody K.; Bell, Clay S.

Gathering pipelines, which transport gas from well pads to downstream processing, are a sector of the natural gas supply chain for which little measured methane emissions data are available. This study performed leak detection and measurement on 96 km of gathering pipeline and the associated 56 pigging facilities and 39 block valves. The study found one underground leak accounting for 83% (4.0 kg CH 4/hr) of total measured emissions. Methane emissions for the 4684 km of gathering pipeline in the study area were estimated at 402 kg CH 4/hr [95 to 1065 kg CH 4/hr, 95% CI], or 1% [0.2%more » to 2.6%] of all methane emissions measured during a prior aircraft study of the same area. Emissions estimated by this study fall within the uncertainty range of emissions estimated using emission factors from EPA's 2015 Greenhouse Inventory and study activity estimates. While EPA's current inventory is based upon emission factors from distribution mains measured in the 1990s, this study indicates that using emission factors from more recent distribution studies could significantly underestimate emissions from gathering pipelines. To guide broader studies of pipeline emissions, we also estimate the fraction of the pipeline length within a basin that must be measured to constrain uncertainty of pipeline emissions estimates to within 1% of total basin emissions. The study provides both substantial insight into the mix of emission sources and guidance for future gathering pipeline studies, but since measurements were made in a single basin, the results are not sufficiently representative to provide methane emission factors at the regional or national level.« less

A Java-based fMRI processing pipeline evaluation system for assessment of univariate general linear model and multivariate canonical variate analysis-based pipelines.

PubMed

Zhang, Jing; Liang, Lichen; Anderson, Jon R; Gatewood, Lael; Rottenberg, David A; Strother, Stephen C

2008-01-01

As functional magnetic resonance imaging (fMRI) becomes widely used, the demands for evaluation of fMRI processing pipelines and validation of fMRI analysis results is increasing rapidly. The current NPAIRS package, an IDL-based fMRI processing pipeline evaluation framework, lacks system interoperability and the ability to evaluate general linear model (GLM)-based pipelines using prediction metrics. Thus, it can not fully evaluate fMRI analytical software modules such as FSL.FEAT and NPAIRS.GLM. In order to overcome these limitations, a Java-based fMRI processing pipeline evaluation system was developed. It integrated YALE (a machine learning environment) into Fiswidgets (a fMRI software environment) to obtain system interoperability and applied an algorithm to measure GLM prediction accuracy. The results demonstrated that the system can evaluate fMRI processing pipelines with univariate GLM and multivariate canonical variates analysis (CVA)-based models on real fMRI data based on prediction accuracy (classification accuracy) and statistical parametric image (SPI) reproducibility. In addition, a preliminary study was performed where four fMRI processing pipelines with GLM and CVA modules such as FSL.FEAT and NPAIRS.CVA were evaluated with the system. The results indicated that (1) the system can compare different fMRI processing pipelines with heterogeneous models (NPAIRS.GLM, NPAIRS.CVA and FSL.FEAT) and rank their performance by automatic performance scoring, and (2) the rank of pipeline performance is highly dependent on the preprocessing operations. These results suggest that the system will be of value for the comparison, validation, standardization and optimization of functional neuroimaging software packages and fMRI processing pipelines.

Wisconsin H-Alpha Mapper | UW-Madison Astronomy

Science.gov Websites

Department of Astronomy Wisconsin H-Alpha Mapper Overview Description About WHAM Fabry-Perot Spectroscopy National Science Foundation Astronomy and... 02.20.2012 | Continue Reading » WHAM featured at Natural Astronomy Galactic Structure GALFA GLIMPSE GLIMPSE360 WHAM Extragalactic Astronomy & Cosmology Local

Spectroradiometric calibration of the thematic mapper and multispectral scanner system

NASA Technical Reports Server (NTRS)

Palmer, J. M.; Slater, P. N.

1983-01-01

The results of an analysis that relates thematic mapper (TM) saturation level to ground reflectance, calendar date, latitude, and atmospheric condition is provided. A revised version of the preprint included with the last quarterly report is also provided for publication in the IEEE Transactions on Geoscience and Remote Sensing.

Can Visualizing Document Space Improve Users' Information Foraging?

ERIC Educational Resources Information Center

Song, Min

1998-01-01

This study shows how users access relevant information in a visualized document space and determine whether BiblioMapper, a visualization tool, strengthens an information retrieval (IR) system and makes it more usable. BiblioMapper, developed for a CISI collection, was evaluated by accuracy, time, and user satisfaction. Users' navigation…

Information content of data from the LANDSAT-4 Thematic Mapper (TM) and multispectral scanner (MSS)

NASA Technical Reports Server (NTRS)

Price, J. C.

1983-01-01

The progress of an investigation to quantify the increased information content of thematic mapper (TM) data as compared to that from the LANDSAT 4 multispectral scanner (MSS) is reported. Two night infrared images were examined and compared with Heat Capacity Mapping Mission data.

78 FR 36176 - Commission Information Collection Activities (FERC-551); Comment Request; Extension

Federal Register 2010, 2011, 2012, 2013, 2014

2013-06-17

...: Reporting of Flow Volume and Capacity by Interstate Natural Gas Pipelines. OMB Control No.: 1902-0243. Type... Code of Federal Regulations 1320.3. Type of Respondents: Interstate Natural Gas Pipelines. Estimate of...) ( http://bls.gov/oes/current/naics2_22.htm and http://www.bls.gov/news.release/ecec.nr0.htm ). Comments...

49 CFR Appendix D to Part 192 - Criteria for Cathodic Protection and Determination of Measurements

Code of Federal Regulations, 2010 CFR

2010-10-01

... half cell: (1) Saturated KCl calomel half cell: −0.78 volt. (2) Silver-silver chloride half cell used...) PIPELINE SAFETY TRANSPORTATION OF NATURAL AND OTHER GAS BY PIPELINE: MINIMUM FEDERAL SAFETY STANDARDS Pt... cell. Determination of this voltage must be made with the protective current applied, and in accordance...

Utilizing remote sensing of thematic mapper data to improve our understanding of estuarine processes and their influence on the productivity of estuarine-dependent fisheries

NASA Technical Reports Server (NTRS)

Browder, Joan A.; May, L. Nelson, Jr.; Rosenthal, Alan; Baumann, Robert H.; Gosselink, James G.

1988-01-01

The continuing disintegration of the coastal marshes of Louisiana is one of the major environmental problems of the nation. The problem of marsh loss in Louisiana is relevant to fishery management because Louisiana leads the nation in landings of fishery products, and most of the landed species are dependent upon estuaries and their associated tidal marshes. In evaluating the potential effect of marshland loss on fisheries, the first two critical factors to consider are: whether land-water interface in actual disintegrating marshes is currently increasing or decreasing, and the magnitude of the change. In the present study, LANDSAT Thematic Mapper (TM) data covering specific marshes in coastal Louisiana were used to test conclusions from the Browder et al (1984) model with regard to the stage in disintegration at which maximum interface occurs; to further explore the relationship between maximum interface and the pattern of distribution of land and water suggested by the model; and to determine the direction and degree of change in land-water interface in relation to land loss in actual marshes.

Twenty-Five Years of Landsat Thermal Band Calibration

NASA Technical Reports Server (NTRS)

Barsi, Julia A.; Markham, Brian L.; Schoff, John R.; Hook, Simon J.; Raqueno, Nina G.

2010-01-01

Landsat-7 Enhanced Thematic Mapper+ (ETM+), launched in April 1999, and Landsat-5 Thematic Mapper (TM), launched in 1984, both have a single thermal band. Both instruments thermal band calibrations have been updated previously: ETM+ in 2001 for a pre-launch calibration error and TM in 2007 for data acquired since the current era of vicarious calibration has been in place (1999). Vicarious calibration teams at Rochester Institute of Technology (RIT) and NASA/Jet Propulsion Laboratory (JPL) have been working to validate the instrument calibration since 1999. Recent developments in their techniques and sites have expanded the temperature and temporal range of the validation. The new data indicate that the calibration of both instruments had errors: the ETM+ calibration contained a gain error of 5.8% since launch; the TM calibration contained a gain error of 5% and an additional offset error between 1997 and 1999. Both instruments required adjustments in their thermal calibration coefficients in order to correct for the errors. The new coefficients were calculated and added to the Landsat operational processing system in early 2010. With the corrections, both instruments are calibrated to within +/-0.7K.

Discovery of the Most Ultra-Luminous QSO Using GAIA, SkyMapper, and WISE

NASA Astrophysics Data System (ADS)

Wolf, Christian; Bian, Fuyan; Onken, Christopher A.; Schmidt, Brian P.; Tisserand, Patrick; Alonzi, Noura; Hon, Wei Jeat; Tonry, John L.

2018-06-01

We report the discovery of the ultra-luminous quasi-stellar object SMSS J215728.21-360215.1 with magnitude z = 16.9 and W4 = 7.42 at redshift 4.75. Given absolute magnitudes of M145, AB = -29.3, M300, AB = -30.12, and logLbol/Lbol, ⊙ = 14.84, it is the quasi-stellar object with the highest unlensed UV-optical luminosity currently known in the Universe. It was found by combining proper-motion data from Gaia DR2 with photometry from SkyMapper DR1 and the Wide-field Infrared Survey Explorer. In the GAIA database, it is an isolated single source and thus unlikely to be strongly gravitationally lensed. It is also unlikely to be a beamed source as it is not discovered in the radio domain by either NRAO-VLA Sky Survey or Sydney University Molonglo Southern Survey. It is classed as a weak-emission-line quasi-stellar object and possesses broad absorption line features. A lightcurve from ATLAS spanning the time from 2015 October to 2017 December shows little sign of variability.

Remote detection of canopy water stress in coniferous forests using the NS001 Thematic Mapper Simulator and the thermal infrared multispectral scanner

NASA Technical Reports Server (NTRS)

Pierce, Lars L.; Running, Steven W.; Riggs, George A.

1990-01-01

Water stress was induced in two coniferous forest stands in West Germany by severing tree sapwood. Leaf water potential, Psi(L), measurements indicated that maximum, naturally occurring levels of water stress developed in the stressed plots while control plots exhibited natural diurnal trends. Images of each site were obtained with the Thematic Mapper Simulator (NS001) and the Thermal Infrared Multispectral Scanner (TIMS) 12 to 15 days after stress induction. NS001 bands 2 to 6, NS001 indices combining bands 4 and 6, and NS001 and TIMS thermal bands showed significant radiance differences between stressed and control plots when large differences in Psi(L) and relative water content (RWC) existed during the morning overflights at Munich. However, the NS001 and TIMS sensors could not detect the slightly smaller differences in Psi(L) and RWC during the Munich afternoon and Frankfurt overflights. The results suggest that routine detection of canopy water stress under operational conditions is difficult utilizing current sensor technology.

Analysis pipelines and packages for Infinium HumanMethylation450 BeadChip (450k) data

PubMed Central

Morris, Tiffany J.; Beck, Stephan

2015-01-01

The Illumina HumanMethylation450 BeadChip has become a popular platform for interrogating DNA methylation in epigenome-wide association studies (EWAS) and related projects as well as resource efforts such as the International Cancer Genome Consortium (ICGC) and the International Human Epigenome Consortium (IHEC). This has resulted in an exponential increase of 450k data in recent years and triggered the development of numerous integrated analysis pipelines and stand-alone packages. This review will introduce and discuss the currently most popular pipelines and packages and is particularly aimed at new 450k users. PMID:25233806

Design and Implementation of an Experimental Cataloging Advisor--Mapper.

ERIC Educational Resources Information Center

Ercegovac, Zorana; Borko, Harold

1992-01-01

Describes the design of an experimental computer-aided cataloging advisor, Mapper, that was developed to help novice users with the descriptive cataloging of single-sheet maps from U.S. publishers. The human-computer interface is considered, the use of HyperCard is discussed, the knowledge base is explained, and assistance screens are described.…

LANDSAT-D data format control book. Volume 6, appendix D: Thematic mapper Computer Compatible Tape (CCT-AT/PT)

NASA Technical Reports Server (NTRS)

Ahmed, H.

1981-01-01

The format of computer compatible tapes which contain LANDSAT 4 and D Prime thematic mapper data is defined. A complete specification of the CCT-AT (radiometric corrections applied and geometric matrices appended) and the CCT-PT (radiometric and geometric corrections) data formats is provided.

Estuary Data Mapper: A coastal information system to propel emerging science and inform environmental management decisions

EPA Science Inventory

The Estuary Data Mapper (EDM) is a free, interactive virtual gateway to coastal data aimed to promote research and aid in environmental management. The graphical user interface allows users to custom select and subset data based on their spatial and temporal interests giving them...

Forest/non-forest stratification in Georgia with Landsat Thematic Mapper data

Treesearch

William H. Cooke

2000-01-01

Geographically accurate Forest Inventory and Analysis (FIA) data may be useful for training, classification, and accuracy assessment of Landsat Thematic Mapper (TM) data. Minimum expectation for maps derived from Landsat data is accurate discrimination of several land cover classes. Landsat TM costs have decreased dramatically, but acquiring cloud-free scenes at...

Information content of data from the LANDSAT 4 Thematic Mapper (TM) and multispectral scanner (MSS)

NASA Technical Reports Server (NTRS)

Price, J. C.

1983-01-01

Simultaneous data acquisition by the LANDSAT 4 thematic mapper and the multispectral scanner permits the comparison of the two types of image data with respect to engineering performance and data applications. Progress in the evaluation of information content of matching scenes in agricultural areas is briefly reported.

CheS-Mapper - Chemical Space Mapping and Visualization in 3D.

PubMed

Gütlein, Martin; Karwath, Andreas; Kramer, Stefan

2012-03-17

Analyzing chemical datasets is a challenging task for scientific researchers in the field of chemoinformatics. It is important, yet difficult to understand the relationship between the structure of chemical compounds, their physico-chemical properties, and biological or toxic effects. To that respect, visualization tools can help to better comprehend the underlying correlations. Our recently developed 3D molecular viewer CheS-Mapper (Chemical Space Mapper) divides large datasets into clusters of similar compounds and consequently arranges them in 3D space, such that their spatial proximity reflects their similarity. The user can indirectly determine similarity, by selecting which features to employ in the process. The tool can use and calculate different kind of features, like structural fragments as well as quantitative chemical descriptors. These features can be highlighted within CheS-Mapper, which aids the chemist to better understand patterns and regularities and relate the observations to established scientific knowledge. As a final function, the tool can also be used to select and export specific subsets of a given dataset for further analysis.

CheS-Mapper - Chemical Space Mapping and Visualization in 3D

PubMed Central

2012-01-01

Analyzing chemical datasets is a challenging task for scientific researchers in the field of chemoinformatics. It is important, yet difficult to understand the relationship between the structure of chemical compounds, their physico-chemical properties, and biological or toxic effects. To that respect, visualization tools can help to better comprehend the underlying correlations. Our recently developed 3D molecular viewer CheS-Mapper (Chemical Space Mapper) divides large datasets into clusters of similar compounds and consequently arranges them in 3D space, such that their spatial proximity reflects their similarity. The user can indirectly determine similarity, by selecting which features to employ in the process. The tool can use and calculate different kind of features, like structural fragments as well as quantitative chemical descriptors. These features can be highlighted within CheS-Mapper, which aids the chemist to better understand patterns and regularities and relate the observations to established scientific knowledge. As a final function, the tool can also be used to select and export specific subsets of a given dataset for further analysis. PMID:22424447

Landsat-4 thematic mapper and thematic mapper simulator data for a porphyry copper deposit

NASA Technical Reports Server (NTRS)

Abrams, M. J.

1984-01-01

Aircraft thematic mapper (TM) data were analyzed to evaluate the potential utility of the Landsat-4 thematic mapper for geologic mapping and detection of hydrothermal alteration zones in the Silver Bell porphyry copper deposit in southern Arizona. The data allow a comparison between aircraft TV simulator data and the Landsat-4 TM satellite data which possess similar spectral bands. A color rationcomposite of 30-m pixels was resampled, in order to clearly define a number of hydroxyl bearing minerals, (kaolinite, sericite, white mica), pyrite and iron oxide/hydroxide minerals. The iron oxide minerals have diagnostic absorption bands in the 0.45 and 0.85 micron regions of the spectrum, and the hydrous minerals are characterized by an absorption in the 2.2 micron region. The position of the spectral bands allow the TM to identify regions of hydrothermal alteration without resorting to a data processing algorithm. The comparison of the aircraft and Landsat-4 TM data showed considerable agreement, and confirmed the utility of TM data for identifying hydrothermal alteration zones. Samples of some color TM images are provided.

Mapping land cover through time with the Rapid Land Cover Mapper—Documentation and user manual

USGS Publications Warehouse

Cotillon, Suzanne E.; Mathis, Melissa L.

2017-02-15

The Rapid Land Cover Mapper is an Esri ArcGIS® Desktop add-in, which was created as an alternative to automated or semiautomated mapping methods. Based on a manual photo interpretation technique, the tool facilitates mapping over large areas and through time, and produces time-series raster maps and associated statistics that characterize the changing landscapes. The Rapid Land Cover Mapper add-in can be used with any imagery source to map various themes (for instance, land cover, soils, or forest) at any chosen mapping resolution. The user manual contains all essential information for the user to make full use of the Rapid Land Cover Mapper add-in. This manual includes a description of the add-in functions and capabilities, and step-by-step procedures for using the add-in. The Rapid Land Cover Mapper add-in was successfully used by the U.S. Geological Survey West Africa Land Use Dynamics team to accurately map land use and land cover in 17 West African countries through time (1975, 2000, and 2013).

Hyperspectral Image-Based Night-Time Vehicle Light Detection Using Spectral Normalization and Distance Mapper for Intelligent Headlight Control.

PubMed

Kim, Heekang; Kwon, Soon; Kim, Sungho

2016-07-08

This paper proposes a vehicle light detection method using a hyperspectral camera instead of a Charge-Coupled Device (CCD) or Complementary metal-Oxide-Semiconductor (CMOS) camera for adaptive car headlamp control. To apply Intelligent Headlight Control (IHC), the vehicle headlights need to be detected. Headlights are comprised from a variety of lighting sources, such as Light Emitting Diodes (LEDs), High-intensity discharge (HID), and halogen lamps. In addition, rear lamps are made of LED and halogen lamp. This paper refers to the recent research in IHC. Some problems exist in the detection of headlights, such as erroneous detection of street lights or sign lights and the reflection plate of ego-car from CCD or CMOS images. To solve these problems, this study uses hyperspectral images because they have hundreds of bands and provide more information than a CCD or CMOS camera. Recent methods to detect headlights used the Spectral Angle Mapper (SAM), Spectral Correlation Mapper (SCM), and Euclidean Distance Mapper (EDM). The experimental results highlight the feasibility of the proposed method in three types of lights (LED, HID, and halogen).

Combining GOES-16 Geostationary Lightning Mapper with the ground based Earth Networks Total Lightning Network

NASA Astrophysics Data System (ADS)

Stock, M.; Lapierre, J. L.; Zhu, Y.

2017-12-01

Recently, the Geostationary Lightning Mapper (GLM) began collecting optical data to locate lightning events and flashes over the North and South American continents. This new instrument promises uniformly high detection efficiency (DE) over its entire field of view, with location accuracy on the order of 10 km. In comparison, Earth Networks Total Lightning Networks (ENTLN) has a less uniform coverage, with higher DE in regions with dense sensor coverage, and lower DE with sparse sensor coverage. ENTLN also offers better location accuracy, lightning classification, and peak current estimation for their lightning locations. It is desirable to produce an integrated dataset, combining the strong points of GLM and ENTLN. The easiest way to achieve this is to simply match located lightning processes from each system using time and distance criteria. This simple method will be limited in scope by the uneven coverage of the ground based network. Instead, we will use GLM group locations to look up the electric field change data recorded by ground sensors near each GLM group, vastly increasing the coverage of the ground network. The ground waveforms can then be used for: improvements to differentiation between glint and lightning for GLM, higher precision lighting location, current estimation, and lightning process classification. Presented is an initial implementation of this type of integration using preliminary GLM data, and waveforms from ENTLN.

High Impact Weather Forecasts and Warnings with the GOES-R Geostationary Lightning Mapper (GLM)

NASA Technical Reports Server (NTRS)

Goodman, Steven J.; Blakeslee, Richard J.; Koshak, William; Mach, Douglas M.

2011-01-01

The Geostationary Operational Environmental Satellite (GOES-R) is the next series to follow the existing GOES system currently operating over the Western Hemisphere. A major advancement over the current GOES include a new capability for total lightning detection (cloud and cloud-to-ground flashes) from the Geostationary Lightning Mapper (GLM). The GLM will operate continuously day and night with near-uniform spatial resolution of 8 km with a product refresh rate of less than 20 sec over the Americas and adjacent oceanic regions. This will aid in forecasting severe storms and tornado activity, and convective weather impacts on aviation safety and efficiency. In parallel with the instrument development, a GOES-R Risk Reduction Science Team and Algorithm Working Group Lightning Applications Team have begun to develop cal/val performance monitoring tools and new applications using the GLM alone, in conjunction with other instruments, and merged or blended integrated observing system products combining satellite, radar, in-situ and numerical models. Proxy total lightning data from the NASA Lightning Imaging Sensor (LIS) on the Tropical Rainfall Measuring Mission (TRMM) satellite and regional ground-based lightning networks are being used to develop the pre-launch algorithms, test data sets, and applications, as well as improve our knowledge of thunderstorm initiation and evolution. In this presentation we review the planned implementation of the instrument and suite of operational algorithms.

Analytical Pipeline for Discovery and Verification of Glycoproteins from Plasma-Derived Extracellular Vesicles as Breast Cancer Biomarkers.

PubMed

Chen, I-Hsuan; Aguilar, Hillary Andaluz; Paez Paez, J Sebastian; Wu, Xiaofeng; Pan, Li; Wendt, Michael K; Iliuk, Anton B; Zhang, Ying; Tao, W Andy

2018-05-15

Glycoproteins comprise more than half of current FDA-approved protein cancer markers, but the development of new glycoproteins as disease biomarkers has been stagnant. Here we present a pipeline to develop glycoproteins from extracellular vesicles (EVs) through integrating quantitative glycoproteomics with a novel reverse phase glycoprotein array and then apply it to identify novel biomarkers for breast cancer. EV glycoproteomics show promise in circumventing the problems plaguing current serum/plasma glycoproteomics and allowed us to identify hundreds of glycoproteins that have not been identified in blood. We identified 1,453 unique glycopeptides representing 556 glycoproteins in EVs, among which 20 were verified significantly higher in individual breast cancer patients. We further applied a novel glyco-specific reverse phase protein array to quantify a subset of the candidates. Together, this study demonstrates the great potential of this integrated pipeline for biomarker discovery.

Relationship between Pipeline Wall Thickness (Gr. X60) and Water Depth towards Avoiding Failure during Installation

NASA Astrophysics Data System (ADS)

Razak, K. Abdul; Othman, M. I. H.; Mat Yusuf, S.; Fuad, M. F. I. Ahmad; yahaya, Effah

2018-05-01

Oil and gas today being developed at different water depth characterized as shallow, deep and ultra-deep waters. Among the major components involved during the offshore installation is pipelines. Pipelines are a transportation method of material through a pipe. In oil and gas industry, pipeline come from a bunch of line pipe that welded together to become a long pipeline and can be divided into two which is gas pipeline and oil pipeline. In order to perform pipeline installation, we need pipe laying barge or pipe laying vessel. However, pipe laying vessel can be divided into two types: S-lay vessel and J-lay vessel. The function of pipe lay vessel is not only to perform pipeline installation. It also performed installation of umbilical or electrical cables. In the simple words, pipe lay vessel is performing the installation of subsea in all the connecting infrastructures. Besides that, the installation processes of pipelines require special focus to make the installation succeed. For instance, the heavy pipelines may exceed the lay vessel’s tension capacities in certain kind of water depth. Pipeline have their own characteristic and we can group it or differentiate it by certain parameters such as grade of material, type of material, size of diameter, size of wall thickness and the strength. For instances, wall thickness parameter studies indicate that if use the higher steel grade of the pipelines will have a significant contribution in pipeline wall thickness reduction. When running the process of pipe lay, water depth is the most critical thing that we need to monitor and concern about because of course we cannot control the water depth but we can control the characteristic of the pipe like apply line pipe that have wall thickness suitable with current water depth in order to avoid failure during the installation. This research will analyse whether the pipeline parameter meet the requirements limit and minimum yield stress. It will overlook to simulate pipe grade API 5L X60 which size from 8 to 20mm thickness with a water depth of 50 to 300m. Result shown that pipeline installation will fail from the wall thickness of 18mm onwards since it has been passed the critical yield percentage.

Remaining Sites Verification Package for the 100-F-44:2, Discovery Pipeline Near 108-F Building, Waste Site Reclassification Form 2007-006

DOE Office of Scientific and Technical Information (OSTI.GOV)

J. M. Capron

2008-05-30

The 100-F-44:2 waste site is a steel pipeline that was discovered in a junction box during confirmatory sampling of the 100-F-26:4 pipeline from December 2004 through January 2005. The 100-F-44:2 pipeline feeds into the 100-F-26:4 subsite vitrified clay pipe (VCP) process sewer pipeline from the 108-F Biology Laboratory at the junction box. In accordance with this evaluation, the confirmatory sampling results support a reclassification of this site to No Action. The current site conditions achieve the remedial action objectives and the corresponding remedial action goals established in the Remaining Sites ROD. The results of confirmatory sampling show that residual contaminantmore » concentrations do not preclude any future uses and allow for unrestricted use of shallow zone soils. The results also demonstrate that residual contaminant concentrations are protective of groundwater and the Columbia River.« less

Pipeline enhances Norman Wells potential

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

Approval of an oil pipeline from halfway down Canada's MacKenzie River Valley at Norman Wells to N. Alberta has raised the potential for development of large reserves along with controversy over native claims. The project involves 2 closely related proposals. One, by Esso Resources, the exploration and production unit of Imperial Oil, will increase oil production from the Norman Wells field from 3000 bpd currently to 25,000 bpd. The other proposal, by Interprovincial Pipeline (N.W) Ltd., calls for construction of an underground pipeline to transport the additional production from Norman Wells to Alberta. The 560-mile, 12-in. pipeline will extend frommore » Norman Wells, which is 90 miles south of the Arctic Circle on the north shore of the Mackenzie River, south to the end of an existing line at Zama in N. Alberta. There will be 3 pumping stations en route. This work also discusses recovery, potential, drilling limitations, the processing plant, positive impact, and further development of the Norman Wells project.« less

Data Reduction of Jittered Infrared Images Using the ORAC Pipeline

NASA Astrophysics Data System (ADS)

Currie, Malcolm; Wright, Gillian; Bridger, Alan; Economou, Frossie

We relate our experiences using the ORAC data reduction pipeline for jittered images of stars and galaxies. The reduction recipes currently combine applications from several Starlink packages with intelligent Perl recipes to cater to UKIRT data. We describe the recipes and some of the algorithms used, and compare the quality of the resultant mosaics and photometry with the existing facilities.

MetaStorm: A Public Resource for Customizable Metagenomics Annotation

PubMed Central

Arango-Argoty, Gustavo; Singh, Gargi; Heath, Lenwood S.; Pruden, Amy; Xiao, Weidong; Zhang, Liqing

2016-01-01

Metagenomics is a trending research area, calling for the need to analyze large quantities of data generated from next generation DNA sequencing technologies. The need to store, retrieve, analyze, share, and visualize such data challenges current online computational systems. Interpretation and annotation of specific information is especially a challenge for metagenomic data sets derived from environmental samples, because current annotation systems only offer broad classification of microbial diversity and function. Moreover, existing resources are not configured to readily address common questions relevant to environmental systems. Here we developed a new online user-friendly metagenomic analysis server called MetaStorm (http://bench.cs.vt.edu/MetaStorm/), which facilitates customization of computational analysis for metagenomic data sets. Users can upload their own reference databases to tailor the metagenomics annotation to focus on various taxonomic and functional gene markers of interest. MetaStorm offers two major analysis pipelines: an assembly-based annotation pipeline and the standard read annotation pipeline used by existing web servers. These pipelines can be selected individually or together. Overall, MetaStorm provides enhanced interactive visualization to allow researchers to explore and manipulate taxonomy and functional annotation at various levels of resolution. PMID:27632579

MetaStorm: A Public Resource for Customizable Metagenomics Annotation.

PubMed

Arango-Argoty, Gustavo; Singh, Gargi; Heath, Lenwood S; Pruden, Amy; Xiao, Weidong; Zhang, Liqing

2016-01-01

Metagenomics is a trending research area, calling for the need to analyze large quantities of data generated from next generation DNA sequencing technologies. The need to store, retrieve, analyze, share, and visualize such data challenges current online computational systems. Interpretation and annotation of specific information is especially a challenge for metagenomic data sets derived from environmental samples, because current annotation systems only offer broad classification of microbial diversity and function. Moreover, existing resources are not configured to readily address common questions relevant to environmental systems. Here we developed a new online user-friendly metagenomic analysis server called MetaStorm (http://bench.cs.vt.edu/MetaStorm/), which facilitates customization of computational analysis for metagenomic data sets. Users can upload their own reference databases to tailor the metagenomics annotation to focus on various taxonomic and functional gene markers of interest. MetaStorm offers two major analysis pipelines: an assembly-based annotation pipeline and the standard read annotation pipeline used by existing web servers. These pipelines can be selected individually or together. Overall, MetaStorm provides enhanced interactive visualization to allow researchers to explore and manipulate taxonomy and functional annotation at various levels of resolution.

Design of a universal logic block for fault-tolerant realization of any logic operation in trapped-ion quantum circuits

NASA Astrophysics Data System (ADS)

Goudarzi, H.; Dousti, M. J.; Shafaei, A.; Pedram, M.

2014-05-01

This paper presents a physical mapping tool for quantum circuits, which generates the optimal universal logic block (ULB) that can, on average, perform any logical fault-tolerant (FT) quantum operations with the minimum latency. The operation scheduling, placement, and qubit routing problems tackled by the quantum physical mapper are highly dependent on one another. More precisely, the scheduling solution affects the quality of the achievable placement solution due to resource pressures that may be created as a result of operation scheduling, whereas the operation placement and qubit routing solutions influence the scheduling solution due to resulting distances between predecessor and current operations, which in turn determines routing latencies. The proposed flow for the quantum physical mapper captures these dependencies by applying (1) a loose scheduling step, which transforms an initial quantum data flow graph into one that explicitly captures the no-cloning theorem of the quantum computing and then performs instruction scheduling based on a modified force-directed scheduling approach to minimize the resource contention and quantum circuit latency, (2) a placement step, which uses timing-driven instruction placement to minimize the approximate routing latencies while making iterative calls to the aforesaid force-directed scheduler to correct scheduling levels of quantum operations as needed, and (3) a routing step that finds dynamic values of routing latencies for the qubits. In addition to the quantum physical mapper, an approach is presented to determine the single best ULB size for a target quantum circuit by examining the latency of different FT quantum operations mapped onto different ULB sizes and using information about the occurrence frequency of operations on critical paths of the target quantum algorithm to weigh these latencies. Experimental results show an average latency reduction of about 40 % compared to previous work.

Using classified Landsat Thematic Mapper data for stratification in a statewide forest inventory

Treesearch

Mark H. Hansen; Daniel G. Wendt

2000-01-01

The 1998 Indiana/Illinois forest inventory (USDA Forest Service, Forest Inventory and Analysis (FIA)) used Landsat Thematic Mapper (TM) data for stratification. Classified images made by the National Gap Analysis Program (GAP) stratified FIA plots into four classes (nonforest, nonforest/ forest, forest/nonforest, and forest) based on a two pixel forest edge buffer zone...

Using Classified Landsat Thematic Mapper Data for Stratification in a Statewide Forest Inventory

Treesearch

Mark H. Hansen; Daniel G. Wendt

2000-01-01

The 1998 Indiana/Illinois forest inventory (USDA Forest Service, Forest Inventory and Analysis (FIA)) used Landsat Thematic Mapper (TM} data for stratification. Classified images made by the National Gap Analysis Program (GAP) stratified FIA plots into four classes (nonforest, nonforest/forest, forest/nonforest, and forest) based on a two pixel forest edge buffer zone...

Thematic Mapper Analysis of Blue Oak (Quercus douglasii) in Central California

Treesearch

Paul A. Lefebvre Jr.; Frank W. Davis; Mark Borchert

1991-01-01

Digital Thematic Mapper (TM) satellite data from September 1986 and December 1985 were analyzed to determine seasonal reflectance properties of blue oak rangeland in the La Panza mountains of San Luis Obispo County. Linear regression analysis was conducted to examine relationships between TM reflectance and oak canopy cover, basal area, and site topographic variables....

Thematic mapper flight model preshipment review data package. Volume 3, part A: System data

NASA Technical Reports Server (NTRS)

1982-01-01

Results of vibration, acoustical noise, and thermal vacuum are described as well as tests studies of EMI/EMC and mass properties conducted for thematic mapper systems integration. Liens are summarized and the engineering change proposal status is presented. Requests for deviation/waiver are included along with failure and nonforming material reports.

The Use of Thematic Mapper Data for Land Cover Discrimination: Preliminary Results from the UK Satmap Programme

NASA Technical Reports Server (NTRS)

Jackson, M. J.; Baker, J. R.; Townshend, J. R. G.; Gayler, J. E.; Hardy, J. R.

1984-01-01

In assessing the accuracy of classification techniques for Thematic Mapper data the consistency of the detector-to-detector response is critical. Preliminary studies were undertaken, therefore, to assess the significance of this factor for the TM. The overall structure of the band relationships can be examined by principal component analysis. In order to examine the utility of the Thematic Mapper data more carefully, six different land cover classes approximately Anderson level 1 were selected. These included an area of water from the sediment-laden Mississippi, woodland, agricultural land and urban land. A plume class was also selected which includes the plume of smoke emanating from the power station and drifting over the Mississippi river.

The GSFC Mark-2 three band hand-held radiometer. [thematic mapper for ground truth data collection

NASA Technical Reports Server (NTRS)

Tucker, C. J.; Jones, W. H.; Kley, W. A.; Sundstrom, G. J.

1980-01-01

A self-contained, portable, hand-radiometer designed for field usage was constructed and tested. The device, consisting of a hand-held probe containing three sensors and a strap supported electronic module, weighs 4 1/2 kilograms. It is powered by flashlight and transistor radio batteries, utilizes two silicon and one lead sulfide detectors, has three liquid crystal displays, sample and hold radiometric sampling, and its spectral configuration corresponds to LANDSAT-D's thematic mapper bands. The device was designed to support thematic mapper ground-truth data collection efforts and to facilitate 'in situ' ground-based remote sensing studies of natural materials. Prototype instruments were extensively tested under laboratory and field conditions with excellent results.

Landsat-4 MSS and Thematic Mapper data quality and information content analysis

NASA Technical Reports Server (NTRS)

Anuta, P. E.; Bartolucci, L. A.; Dean, M. E.; Lozano, D. F.; Malaret, E.; Mcgillem, C. D.; Valdes, J. A.; Valenzuela, C. R.

1984-01-01

Landsat-4 Thematic Mapper and Multispectral Scanner data were analyzed to obtain information on data quality and information content. Geometric evaluations were performed to test band-to-band registration accuracy. Thematic Mapper overall system resolution was evaluated using scene objects which demonstrated sharp high contrast edge responses. Radiometric evaluation included detector relative calibration, effects of resampling, and coherent noise effects. Information content evaluation was carried out using clustering, principal components, transformed divergence separability measure, and numerous supervised classifiers on data from Iowa and Illinois. A detailed spectral class analysis (multispectral classification) was carried out on data from the Des Moines, IA area to compare the information content of the MSS and TM for a large number of scene classes.

Simulation of a manual electric-arc welding in a working gas pipeline. 2. Numerical investigation of the temperature-stress distribution in the wall of a gas pipe

NASA Astrophysics Data System (ADS)

Baikov, V. I.; Gishkelyuk, I. A.; Rus', A. M.; Sidorovich, T. V.; Tonkonogov, B. A.

2010-11-01

A numerical simulation of the action of the current experienced by an electric arc and the rate of gas flow in a pipe of a cross-country gas pipeline on the depth of penetration of the electric arc into the wall of this pipe and on the current and residual stresses arising in the pipe material in the process of electric-arc welding of nonthrough cavity-like defects in it has been carried out for gas pipes with walls of different thickness.

Comparative assessment of water use and environmental implications of coal slurry pipelines

USGS Publications Warehouse

Palmer, Richard N.; James II, I. C.; Hirsch, R.M.

1977-01-01

With other studies conducted by the U.S. Geological Survey of water use in the conversion and transportation of the West 's coal, an analysis of water use and environmental implications of coal-slurry pipeline transport is presented. Simulations of a hypothetical slurry pipeline of 1000-mile length transporting 12.5 million tons per year indicate that pipeline costs and energy requirements are quite sensitive to the coal-to-water ratio. For realistic water prices, the optimal ratio will not vary far from the 50/50 ratio by weight. In comparison to other methods of energy conversion and transport, coal-slurry pipeline utilize about 1/3 the amount of water required for coal gasification, and about 1/5 the amount required for on-site electrical generation. An analysis of net energy output from operating alternative energy transportation systems for the assumed conditions indicates that both slurry pipeline and rail shipment require approximately 4.5 percent of the potential electrical energy output of the coal transported, and high-voltage, direct-current transportation requires approximately 6.5 percent. The environmental impacts of the different transports options are so substantially different that a common basis for comparison does not exist. (Woodard-USGS)

Open source pipeline for ESPaDOnS reduction and analysis

NASA Astrophysics Data System (ADS)

Martioli, Eder; Teeple, Doug; Manset, Nadine; Devost, Daniel; Withington, Kanoa; Venne, Andre; Tannock, Megan

2012-09-01

OPERA is a Canada-France-Hawaii Telescope (CFHT) open source collaborative software project currently under development for an ESPaDOnS echelle spectro-polarimetric image reduction pipeline. OPERA is designed to be fully automated, performing calibrations and reduction, producing one-dimensional intensity and polarimetric spectra. The calibrations are performed on two-dimensional images. Spectra are extracted using an optimal extraction algorithm. While primarily designed for CFHT ESPaDOnS data, the pipeline is being written to be extensible to other echelle spectrographs. A primary design goal is to make use of fast, modern object-oriented technologies. Processing is controlled by a harness, which manages a set of processing modules, that make use of a collection of native OPERA software libraries and standard external software libraries. The harness and modules are completely parametrized by site configuration and instrument parameters. The software is open- ended, permitting users of OPERA to extend the pipeline capabilities. All these features have been designed to provide a portable infrastructure that facilitates collaborative development, code re-usability and extensibility. OPERA is free software with support for both GNU/Linux and MacOSX platforms. The pipeline is hosted on SourceForge under the name "opera-pipeline".

A De Novo-Assembly Based Data Analysis Pipeline for Plant Obligate Parasite Metatranscriptomic Studies.

PubMed

Guo, Li; Allen, Kelly S; Deiulio, Greg; Zhang, Yong; Madeiras, Angela M; Wick, Robert L; Ma, Li-Jun

2016-01-01

Current and emerging plant diseases caused by obligate parasitic microbes such as rusts, downy mildews, and powdery mildews threaten worldwide crop production and food safety. These obligate parasites are typically unculturable in the laboratory, posing technical challenges to characterize them at the genetic and genomic level. Here we have developed a data analysis pipeline integrating several bioinformatic software programs. This pipeline facilitates rapid gene discovery and expression analysis of a plant host and its obligate parasite simultaneously by next generation sequencing of mixed host and pathogen RNA (i.e., metatranscriptomics). We applied this pipeline to metatranscriptomic sequencing data of sweet basil (Ocimum basilicum) and its obligate downy mildew parasite Peronospora belbahrii, both lacking a sequenced genome. Even with a single data point, we were able to identify both candidate host defense genes and pathogen virulence genes that are highly expressed during infection. This demonstrates the power of this pipeline for identifying genes important in host-pathogen interactions without prior genomic information for either the plant host or the obligate biotrophic pathogen. The simplicity of this pipeline makes it accessible to researchers with limited computational skills and applicable to metatranscriptomic data analysis in a wide range of plant-obligate-parasite systems.

Lunar Geologic Mapping Program: 2008 Update

NASA Technical Reports Server (NTRS)

Gaddis, L.; Tanaka, K.; Skinner, J.; Hawke, B. R.

2008-01-01

The NASA Lunar Geologic Mapping Program is underway and a mappers handbook is in preparation. This program for systematic, global lunar geologic mapping at 1:2.5M scale incorporates digital, multi-scale data from a wide variety of sources. Many of these datasets have been tied to the new Unified Lunar Control Network 2005 [1] and are available online. This presentation summarizes the current status of this mapping program, the datasets now available, and how they might be used for mapping on the Moon.

BALBES: a molecular-replacement pipeline.

PubMed

Long, Fei; Vagin, Alexei A; Young, Paul; Murshudov, Garib N

2008-01-01

The number of macromolecular structures solved and deposited in the Protein Data Bank (PDB) is higher than 40 000. Using this information in macromolecular crystallography (MX) should in principle increase the efficiency of MX structure solution. This paper describes a molecular-replacement pipeline, BALBES, that makes extensive use of this repository. It uses a reorganized database taken from the PDB with multimeric as well as domain organization. A system manager written in Python controls the workflow of the process. Testing the current version of the pipeline using entries from the PDB has shown that this approach has huge potential and that around 75% of structures can be solved automatically without user intervention.

DPPP: Default Pre-Processing Pipeline

NASA Astrophysics Data System (ADS)

van Diepen, Ger; Dijkema, Tammo Jan

2018-04-01

DPPP (Default Pre-Processing Pipeline, also referred to as NDPPP) reads and writes radio-interferometric data in the form of Measurement Sets, mainly those that are created by the LOFAR telescope. It goes through visibilities in time order and contains standard operations like averaging, phase-shifting and flagging bad stations. Between the steps in a pipeline, the data is not written to disk, making this tool suitable for operations where I/O dominates. More advanced procedures such as gain calibration are also included. Other computing steps can be provided by loading a shared library; currently supported external steps are the AOFlagger (ascl:1010.017) and a bridge that enables loading python steps.

Welcome to a Special Issue about the School-to-Prison Pipeline: The Pathway to Modern Institutionalization

ERIC Educational Resources Information Center

Houchins, David E.; Shippen, Margaret E.

2012-01-01

The aim of this issue is to provide readers with a better understanding of the inexplicable connection between school, community, and incarceration, and how better prepared professionals can make a difference in the lives of youth in the school-to-prison pipeline (STPP). This issue provides readers with an awareness of the current status of the…

Thematic mapper flight model preshipment review data package. Volume 4: Appendix. Part E: Electronics module data

NASA Technical Reports Server (NTRS)

1982-01-01

Tests to verify the as-designed performance of all circuits within the thematic mapper electronics module unit are described. Specifically, the tests involved the evaluation of the scan line corrector driver, shutter drivers function, cal lamp controller function, post amplifier function, command decoder verification unit, and the temperature and actuator controllers function.

Monitoring landscape change for LANDFIRE using multi-temporal satellite imagery and ancillary data

Treesearch

James E. Vogelmann; Jay R. Kost; Brian Tolk; Stephen Howard; Karen Short; Xuexia Chen; Chengquan Huang; Kari Pabst; Matthew G. Rollins

2011-01-01

LANDFIRE is a large interagency project designed to provide nationwide spatial data for fire management applications. As part of the effort, many 2000 vintage Landsat Thematic Mapper and Enhanced Thematic Mapper plus data sets were used in conjunction with a large volume of field information to generate detailed vegetation type and structure data sets for the entire...

Lightning Mapper Sensor Lens Assembly S.O. 5459: Project Management Plan

NASA Technical Reports Server (NTRS)

Zeidler, Janet

1999-01-01

Kaiser Electro-Optics, Inc. (KEO) has developed this Project Management Plan for the Lightning Mapper Sensor (LMS) program. KEO has integrated a team of experts in a structured program management organization to meet the needs of the LMS program. The project plan discusses KEO's approach to critical program elements including Program Management, Quality Assurance, Configuration Management, and Schedule.

Spectroradiometric calibration of the Thematic Mapper and multispectral scanner system

NASA Technical Reports Server (NTRS)

Slater, P. N.; Palmer, J. M. (Principal Investigator)

1985-01-01

The eleventh quarterly report on Spectroradiometric Calibration of the Thematic Mapper (Contract NAS5-27832) discusses calibrations made at White Sands on 24 May 1985. An attempt is made to standardize test results. Critical values used in the final steps of the data reduction and the comparison of the results of the pre-flight and internal calibration (IC) data are summarized.

Using Landsat Thematic Mapper and SPOT Satellite Imagery to inventory wetland plants of the Coeur d'Alene Floodplain

Treesearch

F. M. Roberts; P. E. Gessler

2000-01-01

Landsat Thematic Mapper (TM) and SPOT Satellite Imagery were used to map wetland plant species in thc Coeur d'Alene floodplain in northern Idaho. This paper discusses the methodology used to create a wetland plant species map for the floodplain. Species mapped included common cattail (Typha latifolia); water horse-tail (Equisetum...

Landsat and Thermal Infrared Imaging

NASA Technical Reports Server (NTRS)

Arvidson, Terry; Barsi, Julia; Jhabvala, Murzy; Reuter, Dennis

2012-01-01

The purpose of this chapter is to describe the collection of thermal images by Landsat sensors already on orbit and to introduce the new thermal sensor to be launched in 2013. The chapter describes the thematic mapper (TM) and enhanced thematic mapper plus (ETM+) sensors, the calibration of their thermal bands, and the design and prelaunch calibration of the new thermal infrared sensor (TIRS).

Distributing FIA Information onto Segmented Landsat Thematic Mapper Images Stratified with Industrial Ground Data

Treesearch

Tripp Lowe; Chris Cieszewski; Michael Zasada; Jarek Zawadzki

2005-01-01

The ability to evaluate the ecological and economical effects of proposed modifications to Georgia's best management practices is an important issue in the State. We have incorporated tabular FIA data with Landsat Thematic Mapper satellite images and other spatial data to model Georgia's forested land and assess the area, volume, age, and site quality...

Estuary Data Mapper: A Stand-Alone Tool for Geospatial Data Access, Visualization and Download for Estuaries and Coastal Watersheds of the United States

EPA Science Inventory

The US EPA Estuary Data Mapper (EDM; http://badger.epa.gov/rsig/edm/index.html) has been designed as a free stand-alone tool for geospatial data discovery, visualization, and data download for estuaries and their associated watersheds in the conterminous United States. EDM requi...

Estuary Data Mapper: A Stand-Alone Tool for Geospatial Data Access, Visualization and Download for Estuaries and Coastal Watersheds of the United States. (UNH)

EPA Science Inventory

The US EPA Estuary Data Mapper (EDM; http://badger.epa.gov/rsig/edm/index.html) has been designed as a free stand-alone tool for geospatial data discovery, visualization, and data download for estuaries and their associated watersheds in the conterminous United States. EDM requi...

AN ACCURACY ASSESSMENT OF 1997 LANDSAT THEMATIC MAPPER DERIVED LAND COVER FOR THE UPPER SAN PEDRO WATERSHED (U.S./MEXICO)

EPA Science Inventory

High-Resolution airborne color video data were used to evaluate the accuracy of a land cover map of the upper San Pedro River watershed, derived from June 1997 Landsat Thematic Mapper data. The land cover map was interpreted and generated by Instituto del Medio Ambiente y el Bes...

Thematic mapper flight model preshipment review data package. Volume 2, part B: Subsystem data

NASA Technical Reports Server (NTRS)

1982-01-01

Summarized performance data are presented for the following major subsystems of the thematic mapper: the focal plane assembly, the radiative cooler, the radiative cooler door assembly, the top optical assembly, and the telescope assembly. Reference lists of the configurations status and of nonconforming material reports, failure reports, and requests for deviation/waiver are included.

1985 ACSM-ASPRS Fall Convention, Indianapolis, IN, September 8-13, 1985, Technical Papers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1985-01-01

Papers are presented on Landsat image data quality analysis, primary data acquisition, cartography, geodesy, land surveying, and the applications of satellite remote sensing data. Topics discussed include optical scanning and interactive color graphics; the determination of astrolatitudes and astrolongitudes using x, y, z-coordinates on the celestial sphere; raster-based contour plotting from digital elevation models using minicomputers or microcomputers; the operational techniques of the GPS when utilized as a survey instrument; public land surveying and high technology; the use of multitemporal Landsat MSS data for studying forest cover types; interpretation of satellite and aircraft L-band synthetic aperture radar imagery; geological analysismore » of Landsat MSS data; and an interactive real time digital image processing system. Consideration is given to a large format reconnaissance camera; creating an optimized color balance for TM and MSS imagery; band combination selection for visual interpretation of thematic mapper data for resource management; the effect of spatial filtering on scene noise and boundary detail in thematic mapper imagery; the evaluation of the geometric quality of thematic mapper photographic data; and the analysis and correction of Landsat 4 and 5 thematic mapper sensor data.« less

Hyperspectral Image-Based Night-Time Vehicle Light Detection Using Spectral Normalization and Distance Mapper for Intelligent Headlight Control

PubMed Central

Kim, Heekang; Kwon, Soon; Kim, Sungho

2016-01-01

This paper proposes a vehicle light detection method using a hyperspectral camera instead of a Charge-Coupled Device (CCD) or Complementary metal-Oxide-Semiconductor (CMOS) camera for adaptive car headlamp control. To apply Intelligent Headlight Control (IHC), the vehicle headlights need to be detected. Headlights are comprised from a variety of lighting sources, such as Light Emitting Diodes (LEDs), High-intensity discharge (HID), and halogen lamps. In addition, rear lamps are made of LED and halogen lamp. This paper refers to the recent research in IHC. Some problems exist in the detection of headlights, such as erroneous detection of street lights or sign lights and the reflection plate of ego-car from CCD or CMOS images. To solve these problems, this study uses hyperspectral images because they have hundreds of bands and provide more information than a CCD or CMOS camera. Recent methods to detect headlights used the Spectral Angle Mapper (SAM), Spectral Correlation Mapper (SCM), and Euclidean Distance Mapper (EDM). The experimental results highlight the feasibility of the proposed method in three types of lights (LED, HID, and halogen). PMID:27399720

PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database.

PubMed

Wang, Xia; Shen, Yihang; Wang, Shiwei; Li, Shiliang; Zhang, Weilin; Liu, Xiaofeng; Lai, Luhua; Pei, Jianfeng; Li, Honglin

2017-07-03

The PharmMapper online tool is a web server for potential drug target identification by reversed pharmacophore matching the query compound against an in-house pharmacophore model database. The original version of PharmMapper includes more than 7000 target pharmacophores derived from complex crystal structures with corresponding protein target annotations. In this article, we present a new version of the PharmMapper web server, of which the backend pharmacophore database is six times larger than the earlier one, with a total of 23 236 proteins covering 16 159 druggable pharmacophore models and 51 431 ligandable pharmacophore models. The expanded target data cover 450 indications and 4800 molecular functions compared to 110 indications and 349 molecular functions in our last update. In addition, the new web server is united with the statistically meaningful ranking of the identified drug targets, which is achieved through the use of standard scores. It also features an improved user interface. The proposed web server is freely available at http://lilab.ecust.edu.cn/pharmmapper/. © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

Quantitative risk assessment of CO2 transport by pipelines--a review of uncertainties and their impacts.

PubMed

Koornneef, Joris; Spruijt, Mark; Molag, Menso; Ramírez, Andrea; Turkenburg, Wim; Faaij, André

2010-05-15

A systematic assessment, based on an extensive literature review, of the impact of gaps and uncertainties on the results of quantitative risk assessments (QRAs) for CO(2) pipelines is presented. Sources of uncertainties that have been assessed are: failure rates, pipeline pressure, temperature, section length, diameter, orifice size, type and direction of release, meteorological conditions, jet diameter, vapour mass fraction in the release and the dose-effect relationship for CO(2). A sensitivity analysis with these parameters is performed using release, dispersion and impact models. The results show that the knowledge gaps and uncertainties have a large effect on the accuracy of the assessed risks of CO(2) pipelines. In this study it is found that the individual risk contour can vary between 0 and 204 m from the pipeline depending on assumptions made. In existing studies this range is found to be between <1m and 7.2 km. Mitigating the relevant risks is part of current practice, making them controllable. It is concluded that QRA for CO(2) pipelines can be improved by validation of release and dispersion models for high-pressure CO(2) releases, definition and adoption of a universal dose-effect relationship and development of a good practice guide for QRAs for CO(2) pipelines. Copyright (c) 2009 Elsevier B.V. All rights reserved.

Magnetic Flux Leakage and Principal Component Analysis for metal loss approximation in a pipeline

NASA Astrophysics Data System (ADS)

Ruiz, M.; Mujica, L. E.; Quintero, M.; Florez, J.; Quintero, S.

2015-07-01

Safety and reliability of hydrocarbon transportation pipelines represent a critical aspect for the Oil an Gas industry. Pipeline failures caused by corrosion, external agents, among others, can develop leaks or even rupture, which can negatively impact on population, natural environment, infrastructure and economy. It is imperative to have accurate inspection tools traveling through the pipeline to diagnose the integrity. In this way, over the last few years, different techniques under the concept of structural health monitoring (SHM) have continuously been in development. This work is based on a hybrid methodology that combines the Magnetic Flux Leakage (MFL) and Principal Components Analysis (PCA) approaches. The MFL technique induces a magnetic field in the pipeline's walls. The data are recorded by sensors measuring leakage magnetic field in segments with loss of metal, such as cracking, corrosion, among others. The data provide information of a pipeline with 15 years of operation approximately, which transports gas, has a diameter of 20 inches and a total length of 110 km (with several changes in the topography). On the other hand, PCA is a well-known technique that compresses the information and extracts the most relevant information facilitating the detection of damage in several structures. At this point, the goal of this work is to detect and localize critical loss of metal of a pipeline that are currently working.

A graph-based approach for designing extensible pipelines

PubMed Central

2012-01-01

Background In bioinformatics, it is important to build extensible and low-maintenance systems that are able to deal with the new tools and data formats that are constantly being developed. The traditional and simplest implementation of pipelines involves hardcoding the execution steps into programs or scripts. This approach can lead to problems when a pipeline is expanding because the incorporation of new tools is often error prone and time consuming. Current approaches to pipeline development such as workflow management systems focus on analysis tasks that are systematically repeated without significant changes in their course of execution, such as genome annotation. However, more dynamism on the pipeline composition is necessary when each execution requires a different combination of steps. Results We propose a graph-based approach to implement extensible and low-maintenance pipelines that is suitable for pipeline applications with multiple functionalities that require different combinations of steps in each execution. Here pipelines are composed automatically by compiling a specialised set of tools on demand, depending on the functionality required, instead of specifying every sequence of tools in advance. We represent the connectivity of pipeline components with a directed graph in which components are the graph edges, their inputs and outputs are the graph nodes, and the paths through the graph are pipelines. To that end, we developed special data structures and a pipeline system algorithm. We demonstrate the applicability of our approach by implementing a format conversion pipeline for the fields of population genetics and genetic epidemiology, but our approach is also helpful in other fields where the use of multiple software is necessary to perform comprehensive analyses, such as gene expression and proteomics analyses. The project code, documentation and the Java executables are available under an open source license at http://code.google.com/p/dynamic-pipeline. The system has been tested on Linux and Windows platforms. Conclusions Our graph-based approach enables the automatic creation of pipelines by compiling a specialised set of tools on demand, depending on the functionality required. It also allows the implementation of extensible and low-maintenance pipelines and contributes towards consolidating openness and collaboration in bioinformatics systems. It is targeted at pipeline developers and is suited for implementing applications with sequential execution steps and combined functionalities. In the format conversion application, the automatic combination of conversion tools increased both the number of possible conversions available to the user and the extensibility of the system to allow for future updates with new file formats. PMID:22788675

Seqping: gene prediction pipeline for plant genomes using self-training gene models and transcriptomic data.

PubMed

Chan, Kuang-Lim; Rosli, Rozana; Tatarinova, Tatiana V; Hogan, Michael; Firdaus-Raih, Mohd; Low, Eng-Ti Leslie

2017-01-27

Gene prediction is one of the most important steps in the genome annotation process. A large number of software tools and pipelines developed by various computing techniques are available for gene prediction. However, these systems have yet to accurately predict all or even most of the protein-coding regions. Furthermore, none of the currently available gene-finders has a universal Hidden Markov Model (HMM) that can perform gene prediction for all organisms equally well in an automatic fashion. We present an automated gene prediction pipeline, Seqping that uses self-training HMM models and transcriptomic data. The pipeline processes the genome and transcriptome sequences of the target species using GlimmerHMM, SNAP, and AUGUSTUS pipelines, followed by MAKER2 program to combine predictions from the three tools in association with the transcriptomic evidence. Seqping generates species-specific HMMs that are able to offer unbiased gene predictions. The pipeline was evaluated using the Oryza sativa and Arabidopsis thaliana genomes. Benchmarking Universal Single-Copy Orthologs (BUSCO) analysis showed that the pipeline was able to identify at least 95% of BUSCO's plantae dataset. Our evaluation shows that Seqping was able to generate better gene predictions compared to three HMM-based programs (MAKER2, GlimmerHMM and AUGUSTUS) using their respective available HMMs. Seqping had the highest accuracy in rice (0.5648 for CDS, 0.4468 for exon, and 0.6695 nucleotide structure) and A. thaliana (0.5808 for CDS, 0.5955 for exon, and 0.8839 nucleotide structure). Seqping provides researchers a seamless pipeline to train species-specific HMMs and predict genes in newly sequenced or less-studied genomes. We conclude that the Seqping pipeline predictions are more accurate than gene predictions using the other three approaches with the default or available HMMs.

A midas plugin to enable construction of reproducible web-based image processing pipelines

PubMed Central

Grauer, Michael; Reynolds, Patrick; Hoogstoel, Marion; Budin, Francois; Styner, Martin A.; Oguz, Ipek

2013-01-01

Image processing is an important quantitative technique for neuroscience researchers, but difficult for those who lack experience in the field. In this paper we present a web-based platform that allows an expert to create a brain image processing pipeline, enabling execution of that pipeline even by those biomedical researchers with limited image processing knowledge. These tools are implemented as a plugin for Midas, an open-source toolkit for creating web based scientific data storage and processing platforms. Using this plugin, an image processing expert can construct a pipeline, create a web-based User Interface, manage jobs, and visualize intermediate results. Pipelines are executed on a grid computing platform using BatchMake and HTCondor. This represents a new capability for biomedical researchers and offers an innovative platform for scientific collaboration. Current tools work well, but can be inaccessible for those lacking image processing expertise. Using this plugin, researchers in collaboration with image processing experts can create workflows with reasonable default settings and streamlined user interfaces, and data can be processed easily from a lab environment without the need for a powerful desktop computer. This platform allows simplified troubleshooting, centralized maintenance, and easy data sharing with collaborators. These capabilities enable reproducible science by sharing datasets and processing pipelines between collaborators. In this paper, we present a description of this innovative Midas plugin, along with results obtained from building and executing several ITK based image processing workflows for diffusion weighted MRI (DW MRI) of rodent brain images, as well as recommendations for building automated image processing pipelines. Although the particular image processing pipelines developed were focused on rodent brain MRI, the presented plugin can be used to support any executable or script-based pipeline. PMID:24416016

A midas plugin to enable construction of reproducible web-based image processing pipelines.

PubMed

Grauer, Michael; Reynolds, Patrick; Hoogstoel, Marion; Budin, Francois; Styner, Martin A; Oguz, Ipek

2013-01-01

Image processing is an important quantitative technique for neuroscience researchers, but difficult for those who lack experience in the field. In this paper we present a web-based platform that allows an expert to create a brain image processing pipeline, enabling execution of that pipeline even by those biomedical researchers with limited image processing knowledge. These tools are implemented as a plugin for Midas, an open-source toolkit for creating web based scientific data storage and processing platforms. Using this plugin, an image processing expert can construct a pipeline, create a web-based User Interface, manage jobs, and visualize intermediate results. Pipelines are executed on a grid computing platform using BatchMake and HTCondor. This represents a new capability for biomedical researchers and offers an innovative platform for scientific collaboration. Current tools work well, but can be inaccessible for those lacking image processing expertise. Using this plugin, researchers in collaboration with image processing experts can create workflows with reasonable default settings and streamlined user interfaces, and data can be processed easily from a lab environment without the need for a powerful desktop computer. This platform allows simplified troubleshooting, centralized maintenance, and easy data sharing with collaborators. These capabilities enable reproducible science by sharing datasets and processing pipelines between collaborators. In this paper, we present a description of this innovative Midas plugin, along with results obtained from building and executing several ITK based image processing workflows for diffusion weighted MRI (DW MRI) of rodent brain images, as well as recommendations for building automated image processing pipelines. Although the particular image processing pipelines developed were focused on rodent brain MRI, the presented plugin can be used to support any executable or script-based pipeline.

Deliverability on the interstate natural gas pipeline system

DOE Office of Scientific and Technical Information (OSTI.GOV)

NONE

1998-05-01

Deliverability on the Interstate Natural Gas Pipeline System examines the capability of the national pipeline grid to transport natural gas to various US markets. The report quantifies the capacity levels and utilization rates of major interstate pipeline companies in 1996 and the changes since 1990, as well as changes in markets and end-use consumption patterns. It also discusses the effects of proposed capacity expansions on capacity levels. The report consists of five chapters, several appendices, and a glossary. Chapter 1 discusses some of the operational and regulatory features of the US interstate pipeline system and how they affect overall systemmore » design, system utilization, and capacity expansions. Chapter 2 looks at how the exploration, development, and production of natural gas within North America is linked to the national pipeline grid. Chapter 3 examines the capability of the interstate natural gas pipeline network to link production areas to market areas, on the basis of capacity and usage levels along 10 corridors. The chapter also examines capacity expansions that have occurred since 1990 along each corridor and the potential impact of proposed new capacity. Chapter 4 discusses the last step in the transportation chain, that is, deliverability to the ultimate end user. Flow patterns into and out of each market region are discussed, as well as the movement of natural gas between States in each region. Chapter 5 examines how shippers reserve interstate pipeline capacity in the current transportation marketplace and how pipeline companies are handling the secondary market for short-term unused capacity. Four appendices provide supporting data and additional detail on the methodology used to estimate capacity. 32 figs., 15 tabs.« less

An evaluation of simulated Thematic Mapper data and Landsat MSS data for discriminating suburban and regional land use and land cover

NASA Technical Reports Server (NTRS)

Toll, D. L.

1984-01-01

An airborne multispectral scanner, operating in the same spectral channels as the Landsat Thematic Mapper (TM), was used in a region east of Denver, CO, for a simulation test performed in the framework of using TM to discriminate the level I and level II classes. It is noted that at the 30-m spatial resolution of the Thematic Mapper Simulator (TMS) the overall discrimination for such classes as commercial/industrial land, rangeland, irrigated sod, irrigated alfalfa, and irrigated pasture was superior to that of the Landsat Multispectral Scanner, primarily due to four added spectral bands. For residential and other spectrally heterogeneous classes, however, the higher resolution of TMS resulted in increased variability within the class and a larger spectral overlap.

The Eastring gas pipeline in the context of the Central and Eastern European gas supply challenge

NASA Astrophysics Data System (ADS)

Mišík, Matúš; Nosko, Andrej

2017-11-01

Ever since the 2009 natural gas crisis, energy security has been a crucial priority for countries of Central and Eastern Europe. Escalating in 2014, the conflict between Ukraine and Russia further fuelled negative expectations about the future development of energy relations for the region predominantly supplied by Russia. As a response to the planned cessation of gas transit through the Brotherhood pipeline, which brings Russian gas to Europe via Ukraine and Slovakia, the Slovak transmission system operator Eustream proposed the Eastring pipeline. This Perspective analyses this proposal and argues that neither the perceived decrease in Slovak energy security nor the loss of economic rent from the international gas transit should be the main policy driver behind such a major infrastructure project. Although marketed as an answer to current Central and Eastern European gas supply security challenges, the Eastring pipeline is actually mainly focused on issues connected to the Slovak gas transit.

An Investigation of the Cryogenic Freezing of Water in Non-Metallic Pipelines

NASA Astrophysics Data System (ADS)

Martin, C. I.; Richardson, R. N.; Bowen, R. J.

2004-06-01

Pipe freezing is increasingly used in a range of industries to solve otherwise intractable pipe line maintenance and servicing problems. This paper presents the interim results from an experimental study on deliberate freezing of polymeric pipelines. Previous and contemporary works are reviewed. The object of the current research is to confirm the feasibility of ice plug formation within a polymeric pipe as a method of isolation. Tests have been conducted on a range of polymeric pipes of various sizes. The results reported here all relate to freezing of horizontal pipelines. In each case the process of plug formation was photographed, the frozen plug pressure tested and the pipe inspected for signs of damage resulting from the freeze procedure. The time to freeze was recorded and various temperatures logged. These tests have demonstrated that despite the poor thermal and mechanical properties of the polymers, freezing offers a viable alternative method of isolation in polymeric pipelines.

The LCOGT Science Archive and Data Pipeline

NASA Astrophysics Data System (ADS)

Lister, Tim; Walker, Z.; Ciardi, D.; Gelino, C. R.; Good, J.; Laity, A.; Swain, M.

2013-01-01

Las Cumbres Observatory Global Telescope (LCOGT) is building and deploying a world-wide network of optical telescopes dedicated to time-domain astronomy. In the past year, we have deployed and commissioned four new 1m telescopes at McDonald Observatory, Texas and at CTIO, Chile, with more to come at SAAO, South Africa and Siding Spring Observatory, Australia. To handle these new data sources coming from the growing LCOGT network, and to serve them to end users, we have constructed a new data pipeline and Science Archive. We describe the new LCOGT pipeline, currently under development and testing, which makes use of the ORAC-DR automated recipe-based data reduction pipeline and illustrate some of the new data products. We also present the new Science Archive, which is being developed in partnership with the Infrared Processing and Analysis Center (IPAC) and show some of the new features the Science Archive provides.

Implementing an X-ray validation pipeline for the Protein Data Bank

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gore, Swanand; Velankar, Sameer; Kleywegt, Gerard J., E-mail: gerard@ebi.ac.uk

2012-04-01

The implementation of a validation pipeline, based on community recommendations, for future depositions of X-ray crystal structures in the Protein Data Bank is described. There is an increasing realisation that the quality of the biomacromolecular structures deposited in the Protein Data Bank (PDB) archive needs to be assessed critically using established and powerful validation methods. The Worldwide Protein Data Bank (wwPDB) organization has convened several Validation Task Forces (VTFs) to advise on the methods and standards that should be used to validate all of the entries already in the PDB as well as all structures that will be deposited inmore » the future. The recommendations of the X-ray VTF are currently being implemented in a software pipeline. Here, ongoing work on this pipeline is briefly described as well as ways in which validation-related information could be presented to users of structural data.« less

The Moon Mineralogy Mapper (M3) imaging spectrometer for lunar science: Instrument description, calibration, on-orbit measurements, science data calibration and on-orbit validation

USGS Publications Warehouse

Green, R.O.; Pieters, C.; Mouroulis, P.; Eastwood, M.; Boardman, J.; Glavich, T.; Isaacson, P.; Annadurai, M.; Besse, S.; Barr, D.; Buratti, B.; Cate, D.; Chatterjee, A.; Clark, R.; Cheek, L.; Combe, J.; Dhingra, D.; Essandoh, V.; Geier, S.; Goswami, J.N.; Green, R.; Haemmerle, V.; Head, J.; Hovland, L.; Hyman, S.; Klima, R.; Koch, T.; Kramer, G.; Kumar, A.S.K.; Lee, Kenneth; Lundeen, S.; Malaret, E.; McCord, T.; McLaughlin, S.; Mustard, J.; Nettles, J.; Petro, N.; Plourde, K.; Racho, C.; Rodriquez, J.; Runyon, C.; Sellar, G.; Smith, C.; Sobel, H.; Staid, M.; Sunshine, J.; Taylor, L.; Thaisen, K.; Tompkins, S.; Tseng, H.; Vane, G.; Varanasi, P.; White, M.; Wilson, D.

2011-01-01

The NASA Discovery Moon Mineralogy Mapper imaging spectrometer was selected to pursue a wide range of science objectives requiring measurement of composition at fine spatial scales over the full lunar surface. To pursue these objectives, a broad spectral range imaging spectrometer with high uniformity and high signal-to-noise ratio capable of measuring compositionally diagnostic spectral absorption features from a wide variety of known and possible lunar materials was required. For this purpose the Moon Mineralogy Mapper imaging spectrometer was designed and developed that measures the spectral range from 430 to 3000 nm with 10 nm spectral sampling through a 24 degree field of view with 0.7 milliradian spatial sampling. The instrument has a signal-to-noise ratio of greater than 400 for the specified equatorial reference radiance and greater than 100 for the polar reference radiance. The spectral cross-track uniformity is >90% and spectral instantaneous field-of-view uniformity is >90%. The Moon Mineralogy Mapper was launched on Chandrayaan-1 on the 22nd of October. On the 18th of November 2008 the Moon Mineralogy Mapper was turned on and collected a first light data set within 24 h. During this early checkout period and throughout the mission the spacecraft thermal environment and orbital parameters varied more than expected and placed operational and data quality constraints on the measurements. On the 29th of August 2009, spacecraft communication was lost. Over the course of the flight mission 1542 downlinked data sets were acquired that provide coverage of more than 95% of the lunar surface. An end-to-end science data calibration system was developed and all measurements have been passed through this system and delivered to the Planetary Data System (PDS.NASA.GOV). An extensive effort has been undertaken by the science team to validate the Moon Mineralogy Mapper science measurements in the context of the mission objectives. A focused spectral, radiometric, spatial, and uniformity validation effort has been pursued with selected data sets including an Earth-view data set. With this effort an initial validation of the on-orbit performance of the imaging spectrometer has been achieved, including validation of the cross-track spectral uniformity and spectral instantaneous field of view uniformity. The Moon Mineralogy Mapper is the first imaging spectrometer to measure a data set of this kind at the Moon. These calibrated science measurements are being used to address the full set of science goals and objectives for this mission. Copyright 2011 by the American Geophysical Union.

The Moon Mineralogy Mapper (M3) imaging spectrometerfor lunar science: Instrument description, calibration, on‐orbit measurements, science data calibration and on‐orbit validation

USGS Publications Warehouse

C. Pieters,; P. Mouroulis,; M. Eastwood,; J. Boardman,; Green, R.O.; Glavich, T.; Isaacson, P.; Annadurai, M.; Besse, S.; Cate, D.; Chatterjee, A.; Clark, R.; Barr, D.; Cheek, L.; Combe, J.; Dhingra, D.; Essandoh, V.; Geier, S.; Goswami, J.N.; Green, R.; Haemmerle, V.; Head, J.; Hovland, L.; Hyman, S.; Klima, R.; Koch, T.; Kramer, G.; Kumar, A.S.K.; Lee, K.; Lundeen, S.; Malaret, E.; McCord, T.; McLaughlin, S.; Mustard, J.; Nettles, J.; Petro, N.; Plourde, K.; Racho, C.; Rodriguez, J.; Runyon, C.; Sellar, G.; Smith, C.; Sobel, H.; Staid, M.; Sunshine, J.; Taylor, L.; Thaisen, K.; Tompkins, S.; Tseng, H.; Vane, G.; Varanasi, P.; White, M.; Wilson, D.

2011-01-01

The NASA Discovery Moon Mineralogy Mapper imaging spectrometer was selected to pursue a wide range of science objectives requiring measurement of composition at fine spatial scales over the full lunar surface. To pursue these objectives, a broad spectral range imaging spectrometer with high uniformity and high signal-to-noise ratio capable of measuring compositionally diagnostic spectral absorption features from a wide variety of known and possible lunar materials was required. For this purpose the Moon Mineralogy Mapper imaging spectrometer was designed and developed that measures the spectral range from 430 to 3000 nm with 10 nm spectral sampling through a 24 degree field of view with 0.7 milliradian spatial sampling. The instrument has a signal-to-noise ratio of greater than 400 for the specified equatorial reference radiance and greater than 100 for the polar reference radiance. The spectral cross-track uniformity is >90% and spectral instantaneous field-of-view uniformity is >90%. The Moon Mineralogy Mapper was launched on Chandrayaan-1 on the 22nd of October. On the 18th of November 2008 the Moon Mineralogy Mapper was turned on and collected a first light data set within 24 h. During this early checkout period and throughout the mission the spacecraft thermal environment and orbital parameters varied more than expected and placed operational and data quality constraints on the measurements. On the 29th of August 2009, spacecraft communication was lost. Over the course of the flight mission 1542 downlinked data sets were acquired that provide coverage of more than 95% of the lunar surface. An end-to-end science data calibration system was developed and all measurements have been passed through this system and delivered to the Planetary Data System (PDS.NASA.GOV). An extensive effort has been undertaken by the science team to validate the Moon Mineralogy Mapper science measurements in the context of the mission objectives. A focused spectral, radiometric, spatial, and uniformity validation effort has been pursued with selected data sets including an Earth-view data set. With this effort an initial validation of the on-orbit performance of the imaging spectrometer has been achieved, including validation of the cross-track spectral uniformity and spectral instantaneous field of view uniformity. The Moon Mineralogy Mapper is the first imaging spectrometer to measure a data set of this kind at the Moon. These calibrated science measurements are being used to address the full set of science goals and objectives for this mission.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ronold, K.O.; Nielsen, N.J.R.; Tura, F.

This paper demonstrates how a structural reliability method can be applied as a rational means to analyze free spans of submarine pipelines with respect to failure in ultimate loading, and to establish partial safety factors for design of such free spans against this failure mode. It is important to note that the described procedure shall be considered as an illustration of a structural reliability methodology, and that the results do not represent a set of final design recommendations. A scope of design cases, consisting of a number of available site-specific pipeline spans, is established and is assumed representative for themore » future occurrence of submarine pipeline spans. Probabilistic models for the wave and current loading and its transfer to stresses in the pipe wall of a pipeline span is established together with a stochastic representation of the material resistance. The event of failure in ultimate loading is considered as based on a limit state which is reached when the maximum stress over the design life of the pipeline exceeds the yield strength of the pipe material. The yielding limit state is considered an ultimate limit state (ULS).« less

An evolutionary approach to the architecture of effective healthcare delivery systems.

PubMed

Towill, D R; Christopher, M

2005-01-01

Aims to show that material flow concepts developed and successfully applied to commercial products and services can form equally well the architectural infrastructure of effective healthcare delivery systems. The methodology is based on the "power of analogy" which demonstrates that healthcare pipelines may be classified via the Time-Space Matrix. A small number (circa 4) of substantially different healthcare delivery pipelines will cover the vast majority of patient needs and simultaneously create adequate added value from their perspective. The emphasis is firmly placed on total process mapping and analysis via established identification techniques. Healthcare delivery pipelines must be properly engineered and matched to life cycle phase if the service is to be effective. This small family of healthcare delivery pipelines needs to be designed via adherence to very specific-to-purpose principles. These vary from "lean production" through to "agile delivery". The proposition for a strategic approach to healthcare delivery pipeline design is novel and positions much currently isolated research into a comprehensive organisational framework. It therefore provides a synthesis of the needs of global healthcare.

Reliability evaluation of oil pipelines operating in aggressive environment

NASA Astrophysics Data System (ADS)

Magomedov, R. M.; Paizulaev, M. M.; Gebel, E. S.

2017-08-01

In connection with modern increased requirements for ecology and safety, the development of diagnostic services complex is obligatory and necessary enabling to ensure the reliable operation of the gas transportation infrastructure. Estimation of oil pipelines technical condition should be carried out not only to establish the current values of the equipment technological parameters in operation, but also to predict the dynamics of changes in the physical and mechanical characteristics of the material, the appearance of defects, etc. to ensure reliable and safe operation. In the paper, existing Russian and foreign methods for evaluation of the oil pipelines reliability are considered, taking into account one of the main factors leading to the appearance of crevice in the pipeline material, i.e. change the shape of its cross-section, - corrosion. Without compromising the generality of the reasoning, the assumption of uniform corrosion wear for the initial rectangular cross section has been made. As a result a formula for calculation the probability of failure-free operation was formulated. The proposed mathematical model makes it possible to predict emergency situations, as well as to determine optimal operating conditions for oil pipelines.

Corporate Realignments and Investments in the Interstate Natural Gas Transmission System

EIA Publications

1999-01-01

Examines the financial characteristics of current ownership in the natural gas pipeline industry and of the major U.S. interstate pipeline companies that transported the bulk of the natural gas consumed in the United States between 1992 and 1997, focusing on 14 parent corporations. It also examines the near-term investment needs of the industry and the anticipated growth in demand for natural gas during the next decade.

49 CFR 195.577 - What must I do to alleviate interference currents?

Code of Federal Regulations, 2010 CFR

2010-10-01

... each impressed current or galvanic anode system to minimize any adverse effects on existing adjacent... 49 Transportation 3 2010-10-01 2010-10-01 false What must I do to alleviate interference currents... alleviate interference currents? (a) For pipelines exposed to stray currents, you must have a program to...

49 CFR 195.577 - What must I do to alleviate interference currents?

Code of Federal Regulations, 2011 CFR

2011-10-01

... each impressed current or galvanic anode system to minimize any adverse effects on existing adjacent... 49 Transportation 3 2011-10-01 2011-10-01 false What must I do to alleviate interference currents... alleviate interference currents? (a) For pipelines exposed to stray currents, you must have a program to...

WFIRST: Simulating the Wide-Field Sky

NASA Astrophysics Data System (ADS)

Peeples, Molly; WFIRST Wide Field Imager Simulations Working Group

2018-01-01

As astronomy’s first high-resolution wide-field multi-mode instrument, simulated data will play a vital role in the planning for and analysis of data from WFIRST’s WFI (Wide Field Imager) instrument. Part of the key to WFIRST’s scientific success lies in our ability to push the systematics limit, but in order to do so, the WFI pipeline will need to be able to measure and take out said systematics. The efficacy of this pipeline can only be verified with large suites of synthetic data; these data must include both the range of astrophysical sky scenes (from crowded starfields to high-latitude grism data observations) and the systematics from the detector and telescope optics the WFI pipeline aims to mitigate. We summarize here(1) the status of current and planned astrophysical simulations in support of the WFI,(2) the status of current WFI instrument simulators and requirements on future generations thereof, and(3) plans, methods, and requirements on interfacing astrophysical simulations and WFI instrument simulators.

PFGE MAPPER and PFGE READER: two tools to aid in the analysis and data input of pulse field gel electrophoresis maps.

PubMed Central

Shifman, M. A.; Nadkarni, P.; Miller, P. L.

1992-01-01

Pulse field gel electrophoresis mapping is an important technique for characterizing large segments of DNA. We have developed two tools to aid in the construction of pulse field electrophoresis gel maps: PFGE READER which stores experimental conditions and calculates fragment sizes and PFGE MAPPER which constructs pulse field gel electrophoresis maps. PMID:1482898

Results of 17 Independent Geopositional Accuracy Assessments of Earth Satellite Corporation's GeoCover Landsat Thematic Mapper Imagery. Geopositional Accuracy Validation of Orthorectified Landsat TM Imagery: Northeast Asia

NASA Technical Reports Server (NTRS)

Smith, Charles M.

2003-01-01

This report provides results of an independent assessment of the geopositional accuracy of the Earth Satellite (EarthSat) Corporation's GeoCover, Orthorectified Landsat Thematic Mapper (TM) imagery over Northeast Asia. This imagery was purchased through NASA's Earth Science Enterprise (ESE) Scientific Data Purchase (SDP) program.

Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data

PubMed Central

2014-01-01

Background The rapid evolution in high-throughput sequencing (HTS) technologies has opened up new perspectives in several research fields and led to the production of large volumes of sequence data. A fundamental step in HTS data analysis is the mapping of reads onto reference sequences. Choosing a suitable mapper for a given technology and a given application is a subtle task because of the difficulty of evaluating mapping algorithms. Results In this paper, we present a benchmark procedure to compare mapping algorithms used in HTS using both real and simulated datasets and considering four evaluation criteria: computational resource and time requirements, robustness of mapping, ability to report positions for reads in repetitive regions, and ability to retrieve true genetic variation positions. To measure robustness, we introduced a new definition for a correctly mapped read taking into account not only the expected start position of the read but also the end position and the number of indels and substitutions. We developed CuReSim, a new read simulator, that is able to generate customized benchmark data for any kind of HTS technology by adjusting parameters to the error types. CuReSim and CuReSimEval, a tool to evaluate the mapping quality of the CuReSim simulated reads, are freely available. We applied our benchmark procedure to evaluate 14 mappers in the context of whole genome sequencing of small genomes with Ion Torrent data for which such a comparison has not yet been established. Conclusions A benchmark procedure to compare HTS data mappers is introduced with a new definition for the mapping correctness as well as tools to generate simulated reads and evaluate mapping quality. The application of this procedure to Ion Torrent data from the whole genome sequencing of small genomes has allowed us to validate our benchmark procedure and demonstrate that it is helpful for selecting a mapper based on the intended application, questions to be addressed, and the technology used. This benchmark procedure can be used to evaluate existing or in-development mappers as well as to optimize parameters of a chosen mapper for any application and any sequencing platform. PMID:24708189

The GOES-R Series Geostationary Lightning Mapper (GLM)

NASA Technical Reports Server (NTRS)

Goodman, Steven J.; Blakeslee, Richard J.; Koshak, William J.; Mach, Douglas M.

2011-01-01

The Geostationary Operational Environmental Satellite (GOES-R) is the next series to follow the existing GOES system currently operating over the Western Hemisphere. Superior spacecraft and instrument technology will support expanded detection of environmental phenomena, resulting in more timely and accurate forecasts and warnings. Advancements over current GOES capabilities include a new capability for total lightning detection (cloud and cloud-to-ground flashes) from the Geostationary Lightning Mapper (GLM), which will have just completed Critical Design Review and move forward into the construction phase of instrument development. The GLM will operate continuously day and night with near-uniform spatial resolution of 8 km with a product refresh rate of less than 20 sec over the Americas and adjacent oceanic regions. This will aid in forecasting severe storms and tornado activity, and convective weather impacts on aviation safety and efficiency. In parallel with the instrument development (an engineering development unit and 4 flight models), a GOES-R Risk Reduction Team and Algorithm Working Group Lightning Applications Team have begun to develop the Level 2 algorithms, cal/val performance monitoring tools, and new applications. Proxy total lightning data from the NASA Lightning Imaging Sensor (LIS) on the Tropical Rainfall Measuring Mission (TRMM) satellite and regional ground-based lightning networks are being used to develop the pre-launch algorithms, test data sets, and applications, as well as improve our knowledge of thunderstorm initiation and evolution. In this presentation we review the planned implementation of the instrument and suite of operational algorithms

The GOES-R Geostationary Lightning Mapper (GLM) and the Global Observing System for Total Lightning

NASA Technical Reports Server (NTRS)

Goodman, Steven J.; Blakeslee, R. J.; Koshak, W.; Buechler, D.; Carey, L.; Chronis, T.; Mach, D.; Bateman, M.; Peterson, H.; McCaul, E. W., Jr.;

The Goes-R Geostationary Lightning Mapper (GLM)

NASA Technical Reports Server (NTRS)

Goodman, Steven J.; Blakeslee, Richard J.; Koshak, William J.; Mach, Douglas

2011-01-01

The Geostationary Operational Environmental Satellite (GOES-R) is the next series to follow the existing GOES system currently operating over the Western Hemisphere. Superior spacecraft and instrument technology will support expanded detection of environmental phenomena, resulting in more timely and accurate forecasts and warnings. Advancements over current GOES capabilities include a new capability for total lightning detection (cloud and cloud-to-ground flashes) from the Geostationary Lightning Mapper (GLM), and improved storm diagnostic capability with the Advanced Baseline Imager. The GLM will map total lightning activity (in-cloud and cloud-to-ground lighting flashes) continuously day and night with near-uniform spatial resolution of 8 km with a product refresh rate of less than 20 sec over the Americas and adjacent oceanic regions. This will aid in forecasting severe storms and tornado activity, and convective weather impacts on aviation safety and efficiency. In parallel with the instrument development, a GOES-R Risk Reduction Team and Algorithm Working Group Lightning Applications Team have begun to develop the Level 2 algorithms, cal/val performance monitoring tools, and new applications. Proxy total lightning data from the NASA Lightning Imaging Sensor on the Tropical Rainfall Measuring Mission (TRMM) satellite and regional test beds are being used to develop the pre-launch algorithms and applications, and also improve our knowledge of thunderstorm initiation and evolution. In this paper we will report on new Nowcasting and storm warning applications being developed and evaluated at various NOAA Testbeds.

Nurse manager succession planning: a concept analysis.

PubMed

Titzer, Jennifer L; Shirey, Maria R

2013-01-01

The current nursing leadership pipeline is inadequate and demands strategic succession planning methods. This article provides concept clarification regarding nurse manager succession planning. Attributes common to succession planning include organizational commitment and resource allocation, proactive and visionary leadership approach, and a mentoring and coaching environment. Strategic planning, current and future leadership analysis, high-potential identification, and leadership development are succession planning antecedents. Consequences of succession planning are improved leadership and organizational culture continuity, and increased leadership bench strength. Health care has failed to strategically plan for future leadership. Developing a strong nursing leadership pipeline requires deliberate and strategic succession planning. © 2013 Wiley Periodicals, Inc.

Dark and background response stability for the Landsat 8 Thermal Infrared Sensor

USGS Publications Warehouse

Vanderwerff, Kelly; Montanaro, Matthew

2012-01-01

The Thermal Infrared Sensor (TIRS) is a pushbroom sensor that will be a part of the Landsat Data Continuity Mission (LDCM), which is a joint mission between NASA and the USGS. The TIRS instrument will continue to collect the thermal infrared data that are currently being collected by the Thematic Mapper and the Enhanced Thematic Mapper Plus on Landsats 5 and 7, respectively. One of the key requirements of the new sensor is that the dark and background response be stable to ensure proper data continuity from the legacy Landsat instruments. Pre launch testing of the instrument has recently been completed at the NASA Goddard Space Flight Center (GSFC), which included calibration collects that mimic those that will be performed on orbit. These collects include images of a cold plate meant to simulate the deep space calibration source as viewed by the instrument in flight. The data from these collects give insight into the stability of the instrument’s dark and background response, as well as factors that may cause these responses to vary. This paper quantifies the measured background and dark response of TIRS as well as its stability.

Stability of landsat-4 thematic mapper outgassing models

USGS Publications Warehouse

Micijevic, E.; Chander, G.

2006-01-01

Oscillations in radiometric gains of the short wave infrared (SWIR) bands in Landsat-4 (L4) and Landsat-5 (L5) Thematic Mappers (TMs) are observed through an analysis of detector responses to the Internal Calibrator (IC) pulses. The oscillations are believed to be caused by an interference effect due to a contaminant film buildup on the window of the cryogenically cooled dewar that houses these detectors. This process of contamination, referred to as outgassing effects, has been well characterized using an optical thin-film model that relates detector responses to the accumulated film thickness and its growth rate. The current models for L4 TM are based on average detector responses to the second brightest IC lamp and have been derived from three data sets acquired during different times throughout the instrument's lifetime. Unlike in L5 TM outgassing characterization, it was found that the L4 TM responses to all three IC lamps can be used to provide accurate characterization and correction for outgassing effects. The analysis of single detector responses revealed an up to five percent difference in the estimated oscillating periods and also indicated a gradual variation of contaminant growth rate over the focal plane.

A De Novo-Assembly Based Data Analysis Pipeline for Plant Obligate Parasite Metatranscriptomic Studies

PubMed Central

Guo, Li; Allen, Kelly S.; Deiulio, Greg; Zhang, Yong; Madeiras, Angela M.; Wick, Robert L.; Ma, Li-Jun

2016-01-01

Current and emerging plant diseases caused by obligate parasitic microbes such as rusts, downy mildews, and powdery mildews threaten worldwide crop production and food safety. These obligate parasites are typically unculturable in the laboratory, posing technical challenges to characterize them at the genetic and genomic level. Here we have developed a data analysis pipeline integrating several bioinformatic software programs. This pipeline facilitates rapid gene discovery and expression analysis of a plant host and its obligate parasite simultaneously by next generation sequencing of mixed host and pathogen RNA (i.e., metatranscriptomics). We applied this pipeline to metatranscriptomic sequencing data of sweet basil (Ocimum basilicum) and its obligate downy mildew parasite Peronospora belbahrii, both lacking a sequenced genome. Even with a single data point, we were able to identify both candidate host defense genes and pathogen virulence genes that are highly expressed during infection. This demonstrates the power of this pipeline for identifying genes important in host–pathogen interactions without prior genomic information for either the plant host or the obligate biotrophic pathogen. The simplicity of this pipeline makes it accessible to researchers with limited computational skills and applicable to metatranscriptomic data analysis in a wide range of plant-obligate-parasite systems. PMID:27462318

Pacific Northwest Storms Situation Report # 3

DOE Office of Scientific and Technical Information (OSTI.GOV)

None

2006-12-17

Significant progress has been made in restoring power to customers in the Pacific Northwest region. Currently, 468,200 customers, including Canada, remain without power. This is down from 1.8 million customers who lost power following severe wind and snow storms on December 14-15, 2006. The customers without power represent about 16 percent of customers in the affected utility service areas of Oregon and Washington. See table below. The Olympic pipeline reports that the pipeline is operational; however, pipeline throughput remains reduced since one substation along the line remains without power. Complete power restoration is expected later today. There are no reportsmore » of problems regarding fuel distribution and production.« less

Analysis pipelines and packages for Infinium HumanMethylation450 BeadChip (450k) data.

PubMed

Morris, Tiffany J; Beck, Stephan

2015-01-15

The Illumina HumanMethylation450 BeadChip has become a popular platform for interrogating DNA methylation in epigenome-wide association studies (EWAS) and related projects as well as resource efforts such as the International Cancer Genome Consortium (ICGC) and the International Human Epigenome Consortium (IHEC). This has resulted in an exponential increase of 450k data in recent years and triggered the development of numerous integrated analysis pipelines and stand-alone packages. This review will introduce and discuss the currently most popular pipelines and packages and is particularly aimed at new 450k users. Copyright © 2014 The Authors. Published by Elsevier Inc. All rights reserved.

Hadoop-MCC: Efficient Multiple Compound Comparison Algorithm Using Hadoop.

PubMed

Hua, Guan-Jie; Hung, Che-Lun; Tang, Chuan Yi

2018-01-01

In the past decade, the drug design technologies have been improved enormously. The computer-aided drug design (CADD) has played an important role in analysis and prediction in drug development, which makes the procedure more economical and efficient. However, computation with big data, such as ZINC containing more than 60 million compounds data and GDB-13 with more than 930 million small molecules, is a noticeable issue of time-consuming problem. Therefore, we propose a novel heterogeneous high performance computing method, named as Hadoop-MCC, integrating Hadoop and GPU, to copy with big chemical structure data efficiently. Hadoop-MCC gains the high availability and fault tolerance from Hadoop, as Hadoop is used to scatter input data to GPU devices and gather the results from GPU devices. Hadoop framework adopts mapper/reducer computation model. In the proposed method, mappers response for fetching SMILES data segments and perform LINGO method on GPU, then reducers collect all comparison results produced by mappers. Due to the high availability of Hadoop, all of LINGO computational jobs on mappers can be completed, even if some of the mappers encounter problems. A comparison of LINGO is performed on each the GPU device in parallel. According to the experimental results, the proposed method on multiple GPU devices can achieve better computational performance than the CUDA-MCC on a single GPU device. Hadoop-MCC is able to achieve scalability, high availability, and fault tolerance granted by Hadoop, and high performance as well by integrating computational power of both of Hadoop and GPU. It has been shown that using the heterogeneous architecture as Hadoop-MCC effectively can enhance better computational performance than on a single GPU device. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

Evaluation of Delamination of X80 Pipeline Steel Coating Under Alternating Stray Current Via Scanning Electrochemical Microscopy

NASA Astrophysics Data System (ADS)

Wang, Xinhua; Liu, Qiang; Chun, Yingchun; Li, Yingchao; Wang, Zuquan

2018-04-01

The delamination of epoxy coating on X80 pipeline steel was evaluated under various stray alternating current (AC) interferences (0-300 A/m2). Qualitative and quantitative analyses were carried out using scanning electrochemical microscopy (SECM), electrochemical impedance spectroscopy (EIS), and three-dimensional digital microscopy. The results show that the SECM current is directly proportional to the soaking time and applied current density. The variation in SECM current curve shape indicates the delamination distance of epoxy coatings at the defect area. The depths of corrosion pits at 50, 100, and 300 A/m2 stray currents were 140, 160, and 240 μm, respectively. The corrosion pits also became wider with increasing current densities. With increasing stray AC densities, both the coating delamination and pit depth became more severe at the same soaking time. The EIS results show that the change in impedance was not significant without stray current, whereas the impedance first decreased and then increased when stray current was applied. These results are consistent with the SECM measurements.

Human Migration and Agricultural Expansion: An Impending Threat to the Maya Biosphere Reserve

NASA Technical Reports Server (NTRS)

Sader, Steven; Reining, Conard; Sever, Thomas L.; Soza, Carlos

1997-01-01

Evidence is presented of the current threats to the Maya Biosphere Reserve in northern Guatemala as derived through time-series Landsat Thematic Mapper observations and analysis. Estimates of deforestation rates and trends are examined for different management units within the reserve and buffer zones. The satellite imagery was used to quantify and monitor rates, patterns, and trends of forest clearing during a time period corresponding to new road construction and significant human migration into the newly accessible forest region. Satellite imagery is appropriate technology in a vast and remote tropical region where aerial photography and extensive field-based methods are not cost-effective and current, timely data is essential for establishing conservation priorities.

Acceleration of short and long DNA read mapping without loss of accuracy using suffix array.

PubMed

Tárraga, Joaquín; Arnau, Vicente; Martínez, Héctor; Moreno, Raul; Cazorla, Diego; Salavert-Torres, José; Blanquer-Espert, Ignacio; Dopazo, Joaquín; Medina, Ignacio

2014-12-01

HPG Aligner applies suffix arrays for DNA read mapping. This implementation produces a highly sensitive and extremely fast mapping of DNA reads that scales up almost linearly with read length. The approach presented here is faster (over 20× for long reads) and more sensitive (over 98% in a wide range of read lengths) than the current state-of-the-art mappers. HPG Aligner is not only an optimal alternative for current sequencers but also the only solution available to cope with longer reads and growing throughputs produced by forthcoming sequencing technologies. https://github.com/opencb/hpg-aligner. © The Author 2014. Published by Oxford University Press.

Flood-inundation maps for the Flatrock River at Columbus, Indiana, 2012

USGS Publications Warehouse

Coon, William F.

2013-01-01

Digital flood-inundation maps for a 5-mile reach of the Flatrock River on the western side of Columbus, Indiana, from County Road 400N to the river mouth at the confluence with Driftwood River, were created by the U.S. Geological Survey (USGS) in cooperation with the Indiana Department of Transportation. The inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation/ and the Federal Flood Inundation Mapper Web site at http://wim.usgs.gov/FIMI/FloodInundationMapper.html, depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) at the USGS streamgage on the Flatrock River at Columbus (station number 03363900). Near-real-time stages at this streamgage may be obtained on the Internet from the USGS National Water Information System at http://waterdata.usgs.gov/ or the National Weather Service (NWS) Advanced Hydrologic Prediction Service, which also presents the USGS data, at http:/water.weather.gov/ahps/. Flood profiles were computed for the stream reach by means of a one-dimensional step-backwater model. The model was calibrated by using the most current stage-discharge relation at the Flatrock River streamgage, high-water marks that were surveyed following the flood of June 7, 2008, and water-surface profiles from the current flood-insurance study for the City of Columbus. The hydraulic model was then used to compute 12 water-surface profiles for flood stages at 1-foot (ft) intervals referenced to the streamgage datum and ranging from 9 ft or near bankfull to 20 ft, which exceeds the stages that correspond to both the estimated 0.2-percent annual exceedance probability flood (500-year recurrence interval flood) and the maximum recorded peak flow. The simulated water-surface profiles were then combined with a Geographic Information System digital elevation model (derived from Light Detection and Ranging (LiDAR) data having a 0.37 ft vertical accuracy and 3.9 ft horizontal resolution) to delineate the area flooded at each water level. The availability of these maps on the USGS Federal Flood Inundation Mapper Web site, along with Internet information regarding current stage from the USGS streamgage, will provide emergency management personnel and residents with information that is critical for flood response activities, such as evacuations and road closures, as well as for post-flood recovery efforts.

The Deep Space Gateway Lightning Mapper (DLM) - Monitoring Global Change and Thunderstorm Processes Through Observations of Earth's High-Latitude Lightning from Cis-Lunar Orbit

NASA Technical Reports Server (NTRS)

Lang, Timothy; Blakeslee, R. J.; Cecil, D. J.; Christian, H. J.; Gatlin, P. N.; Goodman, S. J.; Koshak, W. J.; Petersen, W. A.; Quick, M.; Schultz, C. J.;

Renaissance of protein crystallization and precipitation in biopharmaceuticals purification.

PubMed

Dos Santos, Raquel; Carvalho, Ana Luísa; Roque, A Cecília A

The current chromatographic approaches used in protein purification are not keeping pace with the increasing biopharmaceutical market demand. With the upstream improvements, the bottleneck shifted towards the downstream process. New approaches rely in Anything But Chromatography methodologies and revisiting former techniques with a bioprocess perspective. Protein crystallization and precipitation methods are already implemented in the downstream process of diverse therapeutic biological macromolecules, overcoming the current chromatographic bottlenecks. Promising work is being developed in order to implement crystallization and precipitation in the purification pipeline of high value therapeutic molecules. This review focuses in the role of these two methodologies in current industrial purification processes, and highlights their potential implementation in the purification pipeline of high value therapeutic molecules, overcoming chromatographic holdups. Copyright © 2016 Elsevier Inc. All rights reserved.

Thematic mapper protoflight model preshipment review data package. Volume 4: Appendix. Part A: Multiplexer data book 2

NASA Technical Reports Server (NTRS)

1982-01-01

Final performance test data for the thematic mapper flight model multiplexer are presented in tables. Aspects covered include A/D thresholds for bands 5, 6, and 7; cross talk; the thermistor; bilevel commands signal parameters; A/D threshold ambient, voltage margin low bus; serial data and bit clock parameters; and the wire check. Tests were conducted at ambient temperature.

Quality Control Methodologies for Advanced EMI Sensor Data Acquisition and Anomaly Classification - Former Southwestern Proving Ground, Arkansas

DTIC Science & Technology

2015-07-01

concentrations. A total of 11.23 acres of dynamic surveys were conducted using MetalMapper advanced electromagnetic induction (EMI) sensor. A total of...centimeter DGM digital geophysical mapping DSB Defense Science Board EE/CA Engineering Evaluation/Cost Analysis EMI electromagnetic induction...performed a live site demonstration project using the Geometrics MetalMapper advanced electromagnetic induction (EMI) sensor at the former

An Object-Oriented View of Backend Databases in a Mobile Environment for Navy and Marine Corps Applications

DTIC Science & Technology

2006-09-01

Each of these layers will be described in more detail to include relevant technologies ( Java , PDA, Hibernate , and PostgreSQL) used to implement...Logic Layer -Object-Relational Mapper ( Hibernate ) Data 35 capable in order to interface with Java applications. Based on meeting the selection...further discussed. Query List Application Logic Layer HibernateApache - Java Servlet - Hibernate Interface -OR Mapper -RDBMS Interface

Airborne Topographic Mapper Calibration Procedures and Accuracy Assessment

NASA Technical Reports Server (NTRS)

Martin, Chreston F.; Krabill, William B.; Manizade, Serdar S.; Russell, Rob L.; Sonntag, John G.; Swift, Robert N.; Yungel, James K.

2012-01-01

Description of NASA Airborn Topographic Mapper (ATM) lidar calibration procedures including analysis of the accuracy and consistancy of various ATM instrument parameters and the resulting influence on topographic elevation measurements. The ATM elevations measurements from a nominal operating altitude 500 to 750 m above the ice surface was found to be: Horizontal Accuracy 74 cm, Horizontal Precision 14 cm, Vertical Accuracy 6.6 cm, Vertical Precision 3 cm.

Thematic mapper flight model preshipment review data package. Volume 3, part B: System data

NASA Technical Reports Server (NTRS)

1982-01-01

Procedures and results are presented for performance and systems integration tests of flight model-1 thematic mapper. Aspects considered cover electronic module integration, radiometric calibration, spectral matching, spatial coverage, radiometric calibration of the calibrator, coherent noise, dynamic square wave response, band to band registration, geometric accuracy, and self induced vibration. Thermal vacuum tests, EMI/EMS, and mass properties are included. Liens are summarized.

Modeling energy flow and nutrient cycling in natural semiarid grassland ecosystems with the aid of thematic mapper data

NASA Technical Reports Server (NTRS)

Lewis, James K.

1987-01-01

Energy flow and nutrient cycling were modeled as affected by herbivory on selected intensive sites along gradients of precipitation and soils, validating the model output by monitoring selected parameters with data derived from the Thematic Mapper (TM). Herbivore production was modeled along the gradient of soils and herbivory, and validated with data derived from TM in a spatial data base.

PepMapper: a collaborative web tool for mapping epitopes from affinity-selected peptides.

PubMed

Chen, Wenhan; Guo, William W; Huang, Yanxin; Ma, Zhiqiang

2012-01-01

Epitope mapping from affinity-selected peptides has become popular in epitope prediction, and correspondingly many Web-based tools have been developed in recent years. However, the performance of these tools varies in different circumstances. To address this problem, we employed an ensemble approach to incorporate two popular Web tools, MimoPro and Pep-3D-Search, together for taking advantages offered by both methods so as to give users more options for their specific purposes of epitope-peptide mapping. The combined operation of Union finds as many associated peptides as possible from both methods, which increases sensitivity in finding potential epitopic regions on a given antigen surface. The combined operation of Intersection achieves to some extent the mutual verification by the two methods and hence increases the likelihood of locating the genuine epitopic region on a given antigen in relation to the interacting peptides. The Consistency between Intersection and Union is an indirect sufficient condition to assess the likelihood of successful peptide-epitope mapping. On average from 27 tests, the combined operations of PepMapper outperformed either MimoPro or Pep-3D-Search alone. Therefore, PepMapper is another multipurpose mapping tool for epitope prediction from affinity-selected peptides. The Web server can be freely accessed at: http://informatics.nenu.edu.cn/PepMapper/

Efficient Moment-Based Inference of Admixture Parameters and Sources of Gene Flow

PubMed Central

Levin, Alex; Reich, David; Patterson, Nick; Berger, Bonnie

2013-01-01

The recent explosion in available genetic data has led to significant advances in understanding the demographic histories of and relationships among human populations. It is still a challenge, however, to infer reliable parameter values for complicated models involving many populations. Here, we present MixMapper, an efficient, interactive method for constructing phylogenetic trees including admixture events using single nucleotide polymorphism (SNP) genotype data. MixMapper implements a novel two-phase approach to admixture inference using moment statistics, first building an unadmixed scaffold tree and then adding admixed populations by solving systems of equations that express allele frequency divergences in terms of mixture parameters. Importantly, all features of the model, including topology, sources of gene flow, branch lengths, and mixture proportions, are optimized automatically from the data and include estimates of statistical uncertainty. MixMapper also uses a new method to express branch lengths in easily interpretable drift units. We apply MixMapper to recently published data for Human Genome Diversity Cell Line Panel individuals genotyped on a SNP array designed especially for use in population genetics studies, obtaining confident results for 30 populations, 20 of them admixed. Notably, we confirm a signal of ancient admixture in European populations—including previously undetected admixture in Sardinians and Basques—involving a proportion of 20–40% ancient northern Eurasian ancestry. PMID:23709261

Update on the SDSS-III MARVELS data pipeline development

NASA Astrophysics Data System (ADS)

Li, Rui; Ge, J.; Thomas, N. B.; Petersen, E.; Wang, J.; Ma, B.; Sithajan, S.; Shi, J.; Ouyang, Y.; Chen, Y.

2014-01-01

MARVELS (Multi-object APO Radial Velocity Exoplanet Large-area Survey), as one of the four surveys in the SDSS-III program, has monitored over 3,300 stars during 2008-2012, with each being visited an average of 26 times over a 2-year window. Although the early data pipeline was able to detect over 20 brown dwarf candidates and several hundreds of binaries, no giant planet candidates have been reliably identified due to its large systematic errors. Learning from past data pipeline lessons, we re-designed the entire pipeline to handle various types of systematic effects caused by the instrument (such as trace, slant, distortion, drifts and dispersion) and observation condition changes (such as illumination profile and continuum). We also introduced several advanced methods to precisely extract the RV signals. To date, we have achieved a long term RMS RV measurement error of 14 m/s for HIP-14810 (one of our reference stars) after removal of the known planet signal based on previous HIRES RV measurement. This new 1-D data pipeline has been used to robustly identify four giant planet candidates within the small fraction of the survey data that has been processed (Thomas et al. this meeting). The team is currently working hard to optimize the pipeline, especially the 2-D interference-fringe RV extraction, where early results show a 1.5 times improvement over the 1-D data pipeline. We are quickly approaching the survey baseline performance requirement of 10-35 m/s RMS for 8-12 solar type stars. With this fine-tuned pipeline and the soon to be processed plates of data, we expect to discover many more giant planet candidates and make a large statistical impact to the exoplanet study.

LANDSAT-4 TM image data quality analysis for energy-related applications

NASA Technical Reports Server (NTRS)

Wukelic, G. E.; Foote, H. P.

1983-01-01

LANDSAT-4 Thematic Mapper (TM) data performance and utility characteristics from an energy research and technology perspective is evaluated. The program focuses on evaluating applicational implications of using such data, in combination with other digital data, for current and future energy research and technology activities. Prime interest is in using TM data for siting, developing and operating federal energy facilities. Secondary interests involve the use of such data for resource exploration, environmental monitoring and basic scientific initiatives such as in support of the Continental Scientific Drilling Program.

Starlink Software Developments

NASA Astrophysics Data System (ADS)

Bly, M. J.; Giaretta, D.; Currie, M. J.; Taylor, M.

Some current and upcoming software developments from Starlink were demonstrated. These included invoking traditional Starlink applications via web services, the current version of the ORAC-DR reduction pipeline, and some new Java-based tools including Treeview, an interactive explorer of hierarchical data structures.

Post-Flash Validation of the new ACS/WFC Subarrays

NASA Astrophysics Data System (ADS)

Bellini, A.; Grogin, N. A.; Lim, P. L.; Golimowski, D.

2017-05-01

We made use of the new ACS/WFC subarray images of CAL-14410, taken taken with a large range of flash exposure times (0.1-30 seconds), to probe the temporal stability of the reference flash file and to validate the current post-flash correction pipeline of CALACS and ACS DESTRIPE PLUS on the new subarray modes. No statistically-significant deviations are found between the new post-flashed subarray exposures and the flash reference file, indicating that the LED lamp used to post-flash ACS images has been stable over several years. The current calibration pipelines (both CALACS and ACS DESTRIPE PLUS can be successfully used with the new subarray modes.

Earth Observatory Satellite system definition study. Report no. 5: System design and specifications. Part 2: Ground system element specifications

NASA Technical Reports Server (NTRS)

1974-01-01

The Ground System requirements for the Land Resources Management (LRM) type-A and type-B missions of the Earth Observatory Satellite (EOS) program are presented. Specifications for the Thematic Mapper data processing are provided (LRM A mission). The specifications also cover the R and D instruments (Thematic Mapper and High Resolution Pointable Imager) data processing for the LRM type-B mission.

Processing and analysis of commercial satellite image data of the nuclear accident near Chernobyl, U.S.S.R.

USGS Publications Warehouse

Sadowski, Franklin G.; Covington, Steven J.

1987-01-01

Advanced digital processing techniques were applied to Landsat-5 Thematic Mapper (TM) data and SPOT highresolution visible (HRV) panchromatic data to maximize the utility of images of a nuclear powerplant emergency at Chernobyl in the Soviet Ukraine. The images demonstrate the unique interpretive capabilities provided by the numerous spectral bands of the Thematic Mapper and the high spatial resolution of the SPOT HRV sensor.

A preliminary comparison of Landsat Thematic Mapper and SPOT-1 HRV multispectral data for estimating coniferous forest volume

NASA Technical Reports Server (NTRS)

Ripple, W. J.; Wang, S.; Isaacson, D. L.; Paine, D. P.

1991-01-01

Digital Landsat Thematic Mapper (TM) and SPOT high-resolution visible (HRV) images of coniferous forest canopies were compared in their relationship to forest wood volume using correlation and regression analyses. Significant inverse relationships were found between softwood volume and the spectral bands from both sensors (P less than 0.01). The highest correlations were between the log of softwood volume and the near-infrared bands.

LANDSAT D to test thematic mapper, inaugurate operational system

NASA Technical Reports Server (NTRS)

1982-01-01

NASA will launch the Landsat D spacecraft on July 9, 1982 aboard a new, up-rated Delta 3920 expendable launch vehicle. LANDSAT D will incorporate two highly sophisticated sensors; the flight proven multispectral scanner; and a new instrument expected to advance considerably the remote sensing capabilities of Earth resources satellites. The new sensor, the thematic mapper, provides data in seven spectral (light) bands with greatly improved spectral, spatial and radiometric resolution.

Thematic Mapper: Design through flight evaluation

NASA Technical Reports Server (NTRS)

1984-01-01

LANDSAT 4 and 5, launched in 1982 and 1984, not only carried the Thematic Mapper, but were redesigned to handle the increased data rates associated with it, and to communicate that data to Earth via geosynchronous orbiting Tracking and Data Relay Satellites (TDRS). The TM development program is summarized. A brief historical perspective is presented of the evolution of design requirements and hardware development. The basic performance parameters that serve as sensor design guidelines are presented.

Thematic mapper flight model preshipment review data package. Volume 4: Appendix. Part B: Scan mirror assembly data

NASA Technical Reports Server (NTRS)

1982-01-01

Data from the thematic mapper scan mirror assembly (SMA) acceptance test are presented. Documentation includes: (1) a list of the acceptance test discrepancies; (2) flight 1 SMA test data book; (3) flight 1 SMA environmental report; (4) the configuration verification index; (5) the flight 1 SMA test failure reports; (6) the flight 1 data tapes log; and (7) the requests for deviation/waivers.

Table Rock Lake Water-Clarity Assessment Using Landsat Thematic Mapper Satellite Data

USGS Publications Warehouse

Krizanich, Gary; Finn, Michael P.

2009-01-01

Water quality of Table Rock Lake in southwestern Missouri is assessed using Landsat Thematic Mapper satellite data. A pilot study uses multidate satellite image scenes in conjunction with physical measurements of secchi disk transparency collected by the Lakes of Missouri Volunteer Program to construct a regression model used to estimate water clarity. The natural log of secchi disk transparency is the dependent variable in the regression and the independent variables are Thematic Mapper band 1 (blue) reflectance and a ratio of the band 1 and band 3 (red) reflectance. The regression model can be used to reliably predict water clarity anywhere within the lake. A pixel-level lake map of predicted water clarity or computed trophic state can be produced from the model output. Information derived from this model can be used by water-resource managers to assess water quality and evaluate effects of changes in the watershed on water quality.

Analysis of thematic mapper simulator data collected over eastern North Dakota

NASA Technical Reports Server (NTRS)

Anderson, J. E. (Principal Investigator)

1982-01-01

The results of the analysis of aircraft-acquired thematic mapper simulator (TMS) data, collected to investigate the utility of thematic mapper data in crop area and land cover estimates, are discussed. Results of the analysis indicate that the seven-channel TMS data are capable of delineating the 13 crop types included in the study to an overall pixel classification accuracy of 80.97% correct, with relative efficiencies for four crop types examined between 1.62 and 26.61. Both supervised and unsupervised spectral signature development techniques were evaluated. The unsupervised methods proved to be inferior (based on analysis of variance) for the majority of crop types considered. Given the ground truth data set used for spectral signature development as well as evaluation of performance, it is possible to demonstrate which signature development technique would produce the highest percent correct classification for each crop type.

Evaluation of spatial, radiometric and spectral thematic mapper performance for coastal studies

NASA Technical Reports Server (NTRS)

Klemas, V.

1985-01-01

The main emphasis of the research was to determine what effect different wetland plant canopies would have upon observed reflectance in Thematic Mapper bands. The three major vegetation canopy types (broadleaf, gramineous and leafless) produce unique spectral responses for a similar quantity of live biomass. Biomass estimates computed from spectral data were most similar to biomass estimates determined from harvest data when models developed for a specific canopy were used. In other words, the spectral biomass estimate of a broadleaf canopy was most similar to the harvest biomass estimate when a broadleaf canopy radiance model was used. Work is continuing to more precisely determine regression coefficients for each canopy type and to model the change in the coefficients with various combinations of canopy types. Researchers suspect that textural and spatial considerations can be used to identify canopy types and improve biomass estimates from Thematic Mapper data.

Use of laser range finders and range image analysis in automated assembly tasks

NASA Technical Reports Server (NTRS)

Alvertos, Nicolas; Dcunha, Ivan

1990-01-01

A proposition to study the effect of filtering processes on range images and to evaluate the performance of two different laser range mappers is made. Median filtering was utilized to remove noise from the range images. First and second order derivatives are then utilized to locate the similarities and dissimilarities between the processed and the original images. Range depth information is converted into spatial coordinates, and a set of coefficients which describe 3-D objects is generated using the algorithm developed in the second phase of this research. Range images of spheres and cylinders are used for experimental purposes. An algorithm was developed to compare the performance of two different laser range mappers based upon the range depth information of surfaces generated by each of the mappers. Furthermore, an approach based on 2-D analytic geometry is also proposed which serves as a basis for the recognition of regular 3-D geometric objects.

LANDSAT-4 MSS and Thematic Mapper data quality and information content analysis

NASA Technical Reports Server (NTRS)

Anuta, P.; Bartolucci, L.; Dean, E.; Lozano, F.; Malaret, E.; Mcgillem, C. D.; Valdes, J.; Valenzuela, C.

1984-01-01

LANDSAT-4 thematic mapper (TM) and multispectral scanner (MSS) data were analyzed to obtain information on data quality and information content. Geometric evaluations were performed to test band-to-band registration accuracy. Thematic mapper overall system resolution was evaluated using scene objects which demonstrated sharp high contrast edge responses. Radiometric evaluation included detector relative calibration, effects of resampling, and coherent noise effects. Information content evaluation was carried out using clustering, principal components, transformed divergence separability measure, and supervised classifiers on test data. A detailed spectral class analysis (multispectral classification) was carried out to compare the information content of the MSS and TM for a large number of scene classes. A temperature-mapping experiment was carried out for a cooling pond to test the quality of thermal-band calibration. Overall TM data quality is very good. The MSS data are noisier than previous LANDSAT results.

Tectonic evaluation of the Nubian shield of Northeastern Sudan using thematic mapper imagery

NASA Technical Reports Server (NTRS)

1986-01-01

Bechtel is nearing completion of a one-year program that uses digitally enhanced LANDSAT Thematic Mapper (TM) data to compile the first comprehensive regional tectonic map of the Proterozoic Nubian Shield exposed in the northern Red Sea Hills of northeastern Sudan. The status of significant objectives of this study are given. Pertinent published and unpublished geologic literature and maps of the northern Red Sea Hills to establish the geologic framework of the region were reviewed. Thematic mapper imagery for optimal base-map enhancements was processed. Photo mosaics of enhanced images to serve as base maps for compilation of geologic information were completed. Interpretation of TM imagery to define and delineate structural and lithogologic provinces was completed. Geologic information (petrologic, and radiometric data) was compiled from the literature review onto base-map overlays. Evaluation of the tectonic evolution of the Nubian Shield based on the image interpretation and the compiled tectonic maps is continuing.

Low-cost lightweight airborne laser-based sensors for pipeline leak detection and reporting

NASA Astrophysics Data System (ADS)

Frish, Michael B.; Wainner, Richard T.; Laderer, Matthew C.; Allen, Mark G.; Rutherford, James; Wehnert, Paul; Dey, Sean; Gilchrist, John; Corbi, Ron; Picciaia, Daniele; Andreussi, Paolo; Furry, David

2013-05-01

Laser sensing enables aerial detection of natural gas pipeline leaks without need to fly through a hazardous gas plume. This paper describes adaptations of commercial laser-based methane sensing technology that provide relatively low-cost lightweight and battery-powered aerial leak sensors. The underlying technology is near-infrared Standoff Tunable Diode Laser Absorption Spectroscopy (sTDLAS). In one configuration, currently in commercial operation for pipeline surveillance, sTDLAS is combined with automated data reduction, alerting, navigation, and video imagery, integrated into a single-engine single-pilot light fixed-wing aircraft or helicopter platform. In a novel configuration for mapping landfill methane emissions, a miniaturized ultra-lightweight sTDLAS sensor flies aboard a small quad-rotor unmanned aerial vehicle (UAV).

VizieR Online Data Catalog: LAMOST candidate members of star clusters (Xiang+, 2015)

NASA Astrophysics Data System (ADS)

Xiang, M. S.; Liu, X. W.; Yuan, H. B.; Huang, Y.; Huo, Z. Y.; Zhang, H. W.; Chen, B. Q.; Zhang, H. H.; Sun, N. C.; Wang, C.; Zhao, Y. H.; Shi, J. R.; Luo, A. L.; Li, G. P.; Wu, Y.; Bai, Z. R.; Zhang, Y.; Hou, Y. H.; Yuan, H. L.; Li, G. W.; Wei, Z.

2015-08-01

In this work, we describe the algorithms and implementation of LSP3, the LAMOST Stellar Parameter Pipeline at Peking University, a pipeline developed to determine the stellar parameters (radial velocity Vr, effective temperature Teff, surface gravity logg and metallicity [Fe/H]) from LAMOST spectra based on a template-matching technique. Following the data policy of LAMOST surveys, the data as well as the LSP3 pipeline will be public released as value-added products of the first data release of LAMOST (LAMOST DR1; Bai et al., 2015, A&A submitted), currently scheduled in 2014 December and can be accessed via http://lamost973.pku.edu.cn/site/node/4, along with a description file. (1 data file).

AIR-MRF: Accelerated iterative reconstruction for magnetic resonance fingerprinting.

PubMed

Cline, Christopher C; Chen, Xiao; Mailhe, Boris; Wang, Qiu; Pfeuffer, Josef; Nittka, Mathias; Griswold, Mark A; Speier, Peter; Nadar, Mariappan S

2017-09-01

Existing approaches for reconstruction of multiparametric maps with magnetic resonance fingerprinting (MRF) are currently limited by their estimation accuracy and reconstruction time. We aimed to address these issues with a novel combination of iterative reconstruction, fingerprint compression, additional regularization, and accelerated dictionary search methods. The pipeline described here, accelerated iterative reconstruction for magnetic resonance fingerprinting (AIR-MRF), was evaluated with simulations as well as phantom and in vivo scans. We found that the AIR-MRF pipeline provided reduced parameter estimation errors compared to non-iterative and other iterative methods, particularly at shorter sequence lengths. Accelerated dictionary search methods incorporated into the iterative pipeline reduced the reconstruction time at little cost of quality. Copyright © 2017 Elsevier Inc. All rights reserved.

Implementation of Cloud based next generation sequencing data analysis in a clinical laboratory.

PubMed

Onsongo, Getiria; Erdmann, Jesse; Spears, Michael D; Chilton, John; Beckman, Kenneth B; Hauge, Adam; Yohe, Sophia; Schomaker, Matthew; Bower, Matthew; Silverstein, Kevin A T; Thyagarajan, Bharat

2014-05-23

The introduction of next generation sequencing (NGS) has revolutionized molecular diagnostics, though several challenges remain limiting the widespread adoption of NGS testing into clinical practice. One such difficulty includes the development of a robust bioinformatics pipeline that can handle the volume of data generated by high-throughput sequencing in a cost-effective manner. Analysis of sequencing data typically requires a substantial level of computing power that is often cost-prohibitive to most clinical diagnostics laboratories. To address this challenge, our institution has developed a Galaxy-based data analysis pipeline which relies on a web-based, cloud-computing infrastructure to process NGS data and identify genetic variants. It provides additional flexibility, needed to control storage costs, resulting in a pipeline that is cost-effective on a per-sample basis. It does not require the usage of EBS disk to run a sample. We demonstrate the validation and feasibility of implementing this bioinformatics pipeline in a molecular diagnostics laboratory. Four samples were analyzed in duplicate pairs and showed 100% concordance in mutations identified. This pipeline is currently being used in the clinic and all identified pathogenic variants confirmed using Sanger sequencing further validating the software.

The 'rural pipeline' and retention of rural health professionals in Europe's northern peripheries.

PubMed

Carson, Dean B; Schoo, Adrian; Berggren, Peter

2015-12-01

The major advance in informing rural workforce policy internationally over the past 25 years has been the recognition of the importance of the 'rural pipeline'. The rural pipeline suggests that people with 'rural origin' (who spent some childhood years in rural areas) and/or 'rural exposure' (who do part of their professional training in rural areas) are more likely to select rural work locations. What is not known is whether the rural pipeline also increases the length of time professionals spend in rural practice throughout their careers. This paper analyses data from a survey of rural health professionals in six countries in the northern periphery of Europe in 2013 to examine the relationship between rural origin and rural exposure and the intention to remain in the current rural job or to preference rural jobs in future. Results are compared between countries, between different types of rural areas (based on accessibility to urban centres), different occupations and workers at different stages of their careers. The research concludes that overall the pipeline does impact on retention, and that both rural origin and rural exposure make a contribution. However, the relationship is not strong in all contexts, and health workforce policy should recognise that retention may in some cases be improved by recruiting beyond the pipeline. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Quantification technology study on flaws in steam-filled pipelines based on image processing

NASA Astrophysics Data System (ADS)

Yuan, Pei-xin; Cong, Jia-hui; Chen, Bo

2008-03-01

Starting from exploiting the applied detection system of gas transmission pipeline, a set of X-ray image processing methods and pipeline flaw quantificational evaluation methods are proposed. Defective and non-defective strings and rows in gray image were extracted and oscillogram was obtained. We can distinguish defects in contrast with two gray images division. According to the gray value of defects with different thicknesses, the gray level depth curve is founded. Through exponential and polynomial fitting way to obtain the attenuation mathematical model which the beam penetrates pipeline, thus attain flaw deep dimension. This paper tests on the PPR pipe in the production of simulated holes flaw and cracks flaw. The X-ray source tube voltage was selected as 130kv and valve current was 1.5mA.Test results show that X-ray image processing methods, which meet the needs of high efficient flaw detection and provide quality safeguard for thick oil recovery, can be used successfully in detecting corrosion of insulated pipe.

Reducing the Bottleneck in Discovery of Novel Antibiotics.

PubMed

Jones, Marcus B; Nierman, William C; Shan, Yue; Frank, Bryan C; Spoering, Amy; Ling, Losee; Peoples, Aaron; Zullo, Ashley; Lewis, Kim; Nelson, Karen E

2017-04-01

Most antibiotics were discovered by screening soil actinomycetes, but the efficiency of the discovery platform collapsed in the 1960s. By now, more than 3000 antibiotics have been described and most of the current discovery effort is focused on the rediscovery of known compounds, making the approach impractical. The last marketed broad-spectrum antibiotics discovered were daptomycin, linezolid, and fidaxomicin. The current state of the art in the development of new anti-infectives is a non-existent pipeline in the absence of a discovery platform. This is particularly troubling given the emergence of pan-resistant pathogens. The current practice in dealing with the problem of the background of known compounds is to use chemical dereplication of extracts to assess the relative novelty of a compound it contains. Dereplication typically requires scale-up, extraction, and often fractionation before an accurate mass and structure can be produced by MS analysis in combination with 2D NMR. Here, we describe a transcriptome analysis approach using RNA sequencing (RNASeq) to identify promising novel antimicrobial compounds from microbial extracts. Our pipeline permits identification of antimicrobial compounds that produce distinct transcription profiles using unfractionated cell extracts. This efficient pipeline will eliminate the requirement for purification and structure determination of compounds from extracts and will facilitate high-throughput screen of cell extracts for identification of novel compounds.

A Concept for the One Degree Imager (ODI) Data Reduction Pipeline and Archiving System

NASA Astrophysics Data System (ADS)

Knezek, Patricia; Stobie, B.; Michael, S.; Valdes, F.; Marru, S.; Henschel, R.; Pierce, M.

2010-05-01

The One Degree Imager (ODI), currently being built by the WIYN Observatory, will provide tremendous possibilities for conducting diverse scientific programs. ODI will be a complex instrument, using non-conventional Orthogonal Transfer Array (OTA) detectors. Due to its large field of view, small pixel size, use of OTA technology, and expected frequent use, ODI will produce vast amounts of astronomical data. If ODI is to achieve its full potential, a data reduction pipeline must be developed. Long-term archiving must also be incorporated into the pipeline system to ensure the continued value of ODI data. This paper presents a concept for an ODI data reduction pipeline and archiving system. To limit costs and development time, our plan leverages existing software and hardware, including existing pipeline software, Science Gateways, Computational Grid & Cloud Technology, Indiana University's Data Capacitor and Massive Data Storage System, and TeraGrid compute resources. Existing pipeline software will be augmented to add functionality required to meet challenges specific to ODI, enhance end-user control, and enable the execution of the pipeline on grid resources including national grid resources such as the TeraGrid and Open Science Grid. The planned system offers consistent standard reductions and end-user flexibility when working with images beyond the initial instrument signature removal. It also gives end-users access to computational and storage resources far beyond what are typically available at most institutions. Overall, the proposed system provides a wide array of software tools and the necessary hardware resources to use them effectively.

Application of Weighted Gene Co-expression Network Analysis for Data from Paired Design.

PubMed

Li, Jianqiang; Zhou, Doudou; Qiu, Weiliang; Shi, Yuliang; Yang, Ji-Jiang; Chen, Shi; Wang, Qing; Pan, Hui

2018-01-12

Investigating how genes jointly affect complex human diseases is important, yet challenging. The network approach (e.g., weighted gene co-expression network analysis (WGCNA)) is a powerful tool. However, genomic data usually contain substantial batch effects, which could mask true genomic signals. Paired design is a powerful tool that can reduce batch effects. However, it is currently unclear how to appropriately apply WGCNA to genomic data from paired design. In this paper, we modified the current WGCNA pipeline to analyse high-throughput genomic data from paired design. We illustrated the modified WGCNA pipeline by analysing the miRNA dataset provided by Shiah et al. (2014), which contains forty oral squamous cell carcinoma (OSCC) specimens and their matched non-tumourous epithelial counterparts. OSCC is the sixth most common cancer worldwide. The modified WGCNA pipeline identified two sets of novel miRNAs associated with OSCC, in addition to the existing miRNAs reported by Shiah et al. (2014). Thus, this work will be of great interest to readers of various scientific disciplines, in particular, genetic and genomic scientists as well as medical scientists working on cancer.

Electricity Transmission, Pipelines, and National Trails: An Analysis of Current and Potential Intersections on Federal Lands in the Eastern United States, Alaska, and Hawaii

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kuiper, James A.; Krummel, John R.; Hlava, Kevin J.

As has been noted in many reports and publications, acquiring new or expanded rights-of-way for transmission is a challenging process, because numerous land use and land ownership constraints must be overcome to develop pathways suitable for energy transmission infrastructure. In the eastern U.S., more than twenty federally protected national trails (some of which are thousands of miles long, and cross many states) pose a potential obstacle to the development of new or expanded electricity transmission capacity. However, the scope of this potential problem is not well-documented, and there is no baseline information available that could allow all stakeholders to studymore » routing scenarios that could mitigate impacts on national trails. This report, Electricity Transmission, Pipelines, and National Trails: An Analysis of Current and Potential Intersections on Federal Lands in the Eastern United States, was prepared by the Environmental Science Division of Argonne National Laboratory (Argonne). Argonne was tasked by DOE to analyze the “footprint” of the current network of National Historic and Scenic Trails and the electricity transmission system in the 37 eastern contiguous states, Alaska, and Hawaii; assess the extent to which national trails are affected by electrical transmission; and investigate the extent to which national trails and other sensitive land use types may be affected in the near future by planned transmission lines. Pipelines are secondary to transmission lines for analysis, but are also within the analysis scope in connection with the overall directives of Section 368 of the Energy Policy Act of 2005, and because of the potential for electrical transmission lines being collocated with pipelines.« less

Abstracts of the annual Planetary Geologic Mappers Meeting, June 18-19, 2001, Albuquerque, New Mexico

USGS Publications Warehouse

Parker, Timothy J.; Tanaka, Kenneth L.; Senske, David A.

2002-01-01

The annual Planetary Geologic Mappers Meeting serves two purposes. In addition to giving mappers the opportunity to exchange ideas, experiences, victories, and problems with others, presentations are reviewed by the Geologic Mapping Subcommittee (GeMS) to provide input to the Planetary Geology and Geophysics Mapping Program review panel’s consideration of new proposals and progress reports that include mapping tasks. Funded mappers bring both oral presentation materials (slides or viewgraphs) and map products to post for review by GeMS and fellow mappers. Additionally, the annual meetings typically feature optional field trips offering earth analogs and parallels to planetary mapping problems. The 2001 Mappers Meeting, June 18-19, was convened by Tim Parker, Dave Senske, and Ken Tanaka and was hosted by Larry Crumpler and Jayne Aubele of the New Mexico Museum of Natural History and Science in Albuquerque, New Mexico. Oral presentations were given in the Museum’s Honeywell Auditorium, and maps were posted in the Sandia Room. In addition to active mappers, guests included local science teachers who had successfully competed for the right to attend and listen to the reports. It was a unique pleasure for mappers to have the opportunity to interact with and provide information to teachers responding so enthusiastically to the meeting presentation. On Sunday, June 17, Larry and Jayne conducted an optional pre-meeting field trip. The flanks of Rio Grande Rift, east and west of Albuquerque and Valles Caldera north of town presented tectonic, volcanic, and sedimentary examples of the Rift and adjoining areas analogous to observed features on Mars and Venus. The arid but volcanically and tectonically active environment of New Mexico’s rift valley enables focus on features that appear morphologically young and spectacular in satellite images and digital relief models. The theme of the trip was to see what, at orbiter resolution, "obvious" geologic features look like at lander (outcrop) scales. Trips to the top of the rift-flanking mountains (Sandia Peak, 10,600 ft) and the Valles Caldera, as well as various active spring deposits highlighted the day. After welcoming remarks from the host, Larry Crumpler, opening remarks by Tim Parker and Dave Senske and a report on mapping program status by Ken Tanaka, the mappers’ oral presentations began the morning of June 18, with a session on Venus Geologic Mapping. The afternoon continued with an exciting USGS Planetary GIS on the Web (PIGWAD) demonstration and ended with an open discussion of issues in planetary mapping. Posted maps of Venus quadrangles were viewed during the morning break. Tuesday’s Mars Geologic Mapping session began with a pep talk from Tim Parker encouraging mapping community input to the MER landing site selection committee and continued with Steve Saunders describing the potential contribution of Odyssey Mission data to the geologic mapping of Mars. A Mars map poster session was held during the morning break, and the meeting was adjourned mid-afternoon. After the mappers meeting on Tuesday, attendants were treated to a "Field trip to Mars." The Institute of Meteoritics at the University of New Mexico houses an outstanding collection of meteorites, including those that have been identified as originating from Mars. The Institute tour featured examples of most of the different lithologies exhibited by martian meteorites identified to date, as well as some of the analytical tests (scanning electron microscope) they are conducting on specimens from ALH84001. Wednesday, June 20, featured an optional post-meeting field trip to see a travertine quarry and nearby sites of travertine deposition, the Very Large Array near Socorro, and other volcanic features within the Rio Grande Rift.

MR 201104: Evaluation of Discrimination Technologies and Classification Results and MR 201157: Demonstration of MetalMapper Static Data Acquisition and Data Analysis

DTIC Science & Technology

2016-09-23

Acquisition and Data Analysis). EMI sensors, MetalMapper, man-portable Time-domain Electromagnetic Multi-sensor Towed Array Detection System (TEMTADS...California Department of Toxic Substances Control EM61 EM61-MK2 EMI electromagnetic induction ESTCP Environmental Security Technology Certification...SOP Standard Operating Procedure v TEMTADS Time-domain Electromagnetic Multi-sensor Towed Array Detection System man-portable 2x2 TOI target(s

Evidence for dust transport in Viking IR thermal mapper opacity data

NASA Technical Reports Server (NTRS)

Martin, Terry Z.

1993-01-01

Global maps of 9-micron dust opacity derived from radiometric observations made by the Viking Orbiter IR Thermal Mapper instruments have revealed a wealth of new information about the distribution of airborne dust over 1.36 Mars years from 1976-1979. In particular, the changing dust distribution during major dust storms is of interest since the data provide a point of contact with both Earth-based observations of storm growth and with global circulation models.

LANDSAT D instrument module study

NASA Technical Reports Server (NTRS)

1976-01-01

Spacecraft instrument module configurations which support an earth resource data gathering mission using a thematic mapper sensor were examined. The differences in size of these two experiments necessitated the development of two different spacecraft configurations. Following the selection of the best-suited configurations, a validation phase of design, analysis and modelling was conducted to verify feasibility. The chosen designs were then used to formulate definition for a systems weight, a cost range for fabrication and interface requirements for the thematic mapper (TM).

Moon Zoo - Examples of Interesting Lunar Morphology

NASA Astrophysics Data System (ADS)

Cook, A. C.; Wilkinson, J.

2012-09-01

The MoonMappers citizen science project is part of CosmoQuest, a virtual research facility designed for the public. CosmoQuest seeks to take the best aspects of a research center - research, seminars, journal clubs, and community discussions - and provide them to a community of citizen scientists through a virtual facility. MoonMappers was the first citizen science project within CosmoQuest, and is being used to define best practices in getting the public to effectively learn and do science.

Thematic mapper critical elements breadboard program

NASA Technical Reports Server (NTRS)

Dale, C. H., Jr.; Engel, J. L.; Harney, E. D.

1976-01-01

A 40.6 cm bidirectional scan mirror assembly, a scan line corrector and a silicon photodiode array with integral preamplifier input stages were designed, fabricated, and tested to demonstrate performance consistent with requirements of the Hughes thematic mapper system. The measured performance met or exceeded the original design goals in all cases with the qualification that well defined and well understood deficiencies in the design of the photodiode array package will require the prescribed corrections before flight use.

The value of information as applied to the Landsat Follow-on benefit-cost analysis

NASA Technical Reports Server (NTRS)

Wood, D. B.

1978-01-01

An econometric model was run to compare the current forecasting system with a hypothetical (Landsat Follow-on) space-based system. The baseline current system was a hybrid of USDA SRS domestic forecasts and the best known foreign data. The space-based system improved upon the present Landsat by the higher spatial resolution capability of the thematic mapper. This satellite system is a major improvement for foreign forecasts but no better than SRS for domestic forecasts. The benefit analysis was concentrated on the use of Landsat Follow-on to forecast world wheat production. Results showed that it was possible to quantify the value of satellite information and that there are significant benefits in more timely and accurate crop condition information.

Synthetic natural gas in California: When and why. [from coal

NASA Technical Reports Server (NTRS)

Wood, W. B.

1978-01-01

A coal gasification plant planned for northwestern New Mexico to produce 250 MMCFD of pipeline quality gas (SNG) using the German Lurgi process is discussed. The SNG will be commingled with natural gas in existing pipelines for delivery to southern California and the Midwest. Cost of the plant is figured at more than $1.4 billion in January 1978 dollars with a current inflation rate of $255,000 for each day of delay. Plant start-up is now scheduled for 1984.

Environmental Assessment of the Prather Water Line Improvement Project Otero County, New Mexico

DTIC Science & Technology

2009-04-01

concrete pipe currently in place. Placing a new pipeline along: (2) the Old El Paso Highway from the BWWSA to CoA facilities on Panorama Drive, or (3...Placing a new pipeline along: (2) the Old El Paso Highway from the BWWSA to CoA facilities on Panorama Drive, or (3) along the La Luz Gate Road from...grandeur of large panoramas and natural landscapes. Noise levels in the vicinity of the proposed project originate primarily from highway and railroad

Progress in the planar CPn SOFC system design verification

DOE Office of Scientific and Technical Information (OSTI.GOV)

Elangovan, S.; Hartvigsen, J.; Khandkar, A.

1996-04-01

SOFCo is developing a high efficiency, modular and scaleable planar SOFC module termed the CPn design. This design has been verified in a 1.4 kW module test operated directly on pipeline natural gas. The design features multistage oxidation of fuel wherein the fuel is consumed incrementally over several stages. High efficiency is achieved by uniform current density distribution per stage, which lowers the stack resistance. Additional benefits include thermal regulation and compactness. Test results from stack modules operating in pipeline natural gas are presented.

Sensitivity Analysis of Fatigue Crack Growth Model for API Steels in Gaseous Hydrogen.

PubMed

Amaro, Robert L; Rustagi, Neha; Drexler, Elizabeth S; Slifka, Andrew J

2014-01-01

A model to predict fatigue crack growth of API pipeline steels in high pressure gaseous hydrogen has been developed and is presented elsewhere. The model currently has several parameters that must be calibrated for each pipeline steel of interest. This work provides a sensitivity analysis of the model parameters in order to provide (a) insight to the underlying mathematical and mechanistic aspects of the model, and (b) guidance for model calibration of other API steels.

The eNanoMapper database for nanomaterial safety information

PubMed Central

Chomenidis, Charalampos; Doganis, Philip; Fadeel, Bengt; Grafström, Roland; Hardy, Barry; Hastings, Janna; Hegi, Markus; Jeliazkov, Vedrin; Kochev, Nikolay; Kohonen, Pekka; Munteanu, Cristian R; Sarimveis, Haralambos; Smeets, Bart; Sopasakis, Pantelis; Tsiliki, Georgia; Vorgrimmler, David; Willighagen, Egon

2015-01-01

Summary Background: The NanoSafety Cluster, a cluster of projects funded by the European Commision, identified the need for a computational infrastructure for toxicological data management of engineered nanomaterials (ENMs). Ontologies, open standards, and interoperable designs were envisioned to empower a harmonized approach to European research in nanotechnology. This setting provides a number of opportunities and challenges in the representation of nanomaterials data and the integration of ENM information originating from diverse systems. Within this cluster, eNanoMapper works towards supporting the collaborative safety assessment for ENMs by creating a modular and extensible infrastructure for data sharing, data analysis, and building computational toxicology models for ENMs. Results: The eNanoMapper database solution builds on the previous experience of the consortium partners in supporting diverse data through flexible data storage, open source components and web services. We have recently described the design of the eNanoMapper prototype database along with a summary of challenges in the representation of ENM data and an extensive review of existing nano-related data models, databases, and nanomaterials-related entries in chemical and toxicogenomic databases. This paper continues with a focus on the database functionality exposed through its application programming interface (API), and its use in visualisation and modelling. Considering the preferred community practice of using spreadsheet templates, we developed a configurable spreadsheet parser facilitating user friendly data preparation and data upload. We further present a web application able to retrieve the experimental data via the API and analyze it with multiple data preprocessing and machine learning algorithms. Conclusion: We demonstrate how the eNanoMapper database is used to import and publish online ENM and assay data from several data sources, how the “representational state transfer” (REST) API enables building user friendly interfaces and graphical summaries of the data, and how these resources facilitate the modelling of reproducible quantitative structure–activity relationships for nanomaterials (NanoQSAR). PMID:26425413

The eNanoMapper database for nanomaterial safety information.

PubMed

Jeliazkova, Nina; Chomenidis, Charalampos; Doganis, Philip; Fadeel, Bengt; Grafström, Roland; Hardy, Barry; Hastings, Janna; Hegi, Markus; Jeliazkov, Vedrin; Kochev, Nikolay; Kohonen, Pekka; Munteanu, Cristian R; Sarimveis, Haralambos; Smeets, Bart; Sopasakis, Pantelis; Tsiliki, Georgia; Vorgrimmler, David; Willighagen, Egon

2015-01-01

The NanoSafety Cluster, a cluster of projects funded by the European Commision, identified the need for a computational infrastructure for toxicological data management of engineered nanomaterials (ENMs). Ontologies, open standards, and interoperable designs were envisioned to empower a harmonized approach to European research in nanotechnology. This setting provides a number of opportunities and challenges in the representation of nanomaterials data and the integration of ENM information originating from diverse systems. Within this cluster, eNanoMapper works towards supporting the collaborative safety assessment for ENMs by creating a modular and extensible infrastructure for data sharing, data analysis, and building computational toxicology models for ENMs. The eNanoMapper database solution builds on the previous experience of the consortium partners in supporting diverse data through flexible data storage, open source components and web services. We have recently described the design of the eNanoMapper prototype database along with a summary of challenges in the representation of ENM data and an extensive review of existing nano-related data models, databases, and nanomaterials-related entries in chemical and toxicogenomic databases. This paper continues with a focus on the database functionality exposed through its application programming interface (API), and its use in visualisation and modelling. Considering the preferred community practice of using spreadsheet templates, we developed a configurable spreadsheet parser facilitating user friendly data preparation and data upload. We further present a web application able to retrieve the experimental data via the API and analyze it with multiple data preprocessing and machine learning algorithms. We demonstrate how the eNanoMapper database is used to import and publish online ENM and assay data from several data sources, how the "representational state transfer" (REST) API enables building user friendly interfaces and graphical summaries of the data, and how these resources facilitate the modelling of reproducible quantitative structure-activity relationships for nanomaterials (NanoQSAR).

Vector processing efficiency of plasma MHD codes by use of the FACOM 230-75 APU

NASA Astrophysics Data System (ADS)

Matsuura, T.; Tanaka, Y.; Naraoka, K.; Takizuka, T.; Tsunematsu, T.; Tokuda, S.; Azumi, M.; Kurita, G.; Takeda, T.

1982-06-01

In the framework of pipelined vector architecture, the efficiency of vector processing is assessed with respect to plasma MHD codes in nuclear fusion research. By using a vector processor, the FACOM 230-75 APU, the limit of the enhancement factor due to parallelism of current vector machines is examined for three numerical codes based on a fluid model. Reasonable speed-up factors of approximately 6,6 and 4 times faster than the highly optimized scalar version are obtained for ERATO (linear stability code), AEOLUS-R1 (nonlinear stability code) and APOLLO (1-1/2D transport code), respectively. Problems of the pipelined vector processors are discussed from the viewpoint of restructuring, optimization and choice of algorithms. In conclusion, the important concept of "concurrency within pipelined parallelism" is emphasized.

Future alternatives for the treatment of infections caused by carbapenemase-producing Enterobacteriaceae: what is in the pipeline?

PubMed

Horcajada, Juan Pablo; Torre-Cisneros, Julián; Peña, Carmen; Fariñas, María Carmen

2014-12-01

The emergence and spread of carbapenemase-producing Enterobacteriaceae is an important and very concerning problem. There is an urgent need of new antibimicrobials for treating these infections. Currently there are some options in the pipeline. Several new beta-lactamase and carbapenemase inhibitors as avibactam and MK-7655, combined with old or new betalactams are a very interesting option. Some combinations as ceftazidime-avibactam are in the late stages of clinical development and could reach the market in the next years. New aminoglycosides as plazomicin, tetracycline derivates as eravacycline, and several other new molecules as monosulfactams are currently in different stages of development. Copyright © 2014 Elsevier España, S.L.U. All rights reserved.

Ground data handling for Landsat-D. [for thematic mapper

NASA Technical Reports Server (NTRS)

Lynch, T. J.

1977-01-01

The present plans for the Landsat-D ground data handling are described in relationship to the mission objectives and the planned spacecraft system. The end-to-end data system is presented with particular emphasis on the data handling plans for the new instrument, the Thematic Mapper. This instrument generates ten times the amount of data per scene as the present Multispectral Scanner and this resulting data rate and volume are discussed as well as possible new data techniques to handle them - such as image compression.

Thematic Mapper Protoflight Model Line Spread Function

NASA Technical Reports Server (NTRS)

Schueler, C.

1984-01-01

The Thematic Mapper (TM) Protoflight Model Spatial Line Spread Function (LSF) was not measured before launch. Therefore, methodology are developed to characterize LSF with protoflight model optics and electronics measurements that were made before launch. Direct prelaunch LSF measurements that were made from the flight model TM verified the protoflight TM LSF simulation. Results for two selected protoflight TM channels are presented here. It is shown that LSF data for the other ninety-four channels could be generated in the same fashion.

New dust opacity maps from Viking IR thermal mapper data

NASA Technical Reports Server (NTRS)

Martin, T. Z.; Richardson, M. I.

1992-01-01

Mapping of dust opacity of the Martian atmosphere, using the silicate-induced absorption of 9 micron radiation, was performed with the Viking Infrared Thermal Mapper (IRTM) data for several local dust storms and in a global sense. We present here the first results from an effort to extend the earlier mapping work to the period of the 1977b major storm, and to concentrate attention on the details of opacity behavior during the initial phases of the 1977a and b storms.

Studies of atmospheric dust from Viking IR thermal mapper data

NASA Technical Reports Server (NTRS)

Martin, T. Z.

1993-01-01

Following earlier work to map the dust opacity of the Mars atmosphere, a number of separate studies have been performed employing the radiometric measurements of the Viking IR Thermal Mappers. These efforts have resulted in a new perspective on the atmospheric dust distribution during the Viking Mission, as well as quantitative measures useful in the modeling of likely behavior at other times, and improved boundary conditions for circulation models of Mars. The significant findings from these studies are presented.

Study of Spectral/Radiometric Characteristics of the Thematic Mapper for Land Use Applications

NASA Technical Reports Server (NTRS)

Malila, W. A. (Principal Investigator); Metzler, M. D. (Principal Investigator)

1985-01-01

An investigation conducted in support of the LANDSAT 4/5 Image Data Quality Analysis (LIDQA) Program is discussed. Results of engineering analyses of radiometric, spatial, spectral, and geometric properties of the Thematic Mapper systems are summarized; major emphasis is placed on the radiometric analysis. Details of the analyses are presented in appendices, which contain three of the eight technical papers produced during this investigation; these three, together, describe the major activities and results of the investigation.

Live Site Demonstrations: Former Camp Beale Demonstration of MetalMapper Static Data Acquisition and Data Analysis

DTIC Science & Technology

2012-05-01

tilted metamorphic rock . Typically, the surface layer of the soil is a brown gravelly silt with sand, about 4 inches thick. The subsoil is yellowish red...site setup, the placement of 200 seed items for use in measuring the capabilities of the advanced EMI sensors tested, the subsequent collection of...advanced sensors. The second team was responsible for the cued survey of 1,491 of the 2,143 targets using the MetalMapper, one of the advanced

Spectral characterization of the LANDSAT Thematic Mapper sensors

NASA Technical Reports Server (NTRS)

Markham, B. L.; Barker, J. L.

1984-01-01

The spectral coverage characteristics of the two thematic mapper instruments were determined by analyses of spectral measurements of the optics, filters, and detectors. The following results are presented: (1) band 2 and 3 flatness was slightly below specification, and band 7 flatness was below specification; (2) band 5 upper-band edge was higher than specifications; (3) band 2 band edges were shifted upward about 9 nm relative to nominal; and (4) band 4, 5, and 7 lower band edges were 16 to 18 nm higher then nominal.

MetalMapper Demonstration at the Pole Mountain Target and Maneuver Area, WY

DTIC Science & Technology

2012-03-01

number. 1. REPORT DATE MAR 2012 2 . REPORT TYPE 3. DATES COVERED 00-00-2012 to 00-00-2012 4. TITLE AND SUBTITLE MetalMapper Demonstration at the... 2 ) The bulk of this liability is $10.0B for the 1703 sites identified in the Formerly Used Defense Sites (FUDS) program and $4.4B for the 2433...performer was able to correctly classify 2 /3 of the clutter while identifying 100% of the TOI. 2 The Strategic Environmental Research and Development

NGSPanPipe: A Pipeline for Pan-genome Identification in Microbial Strains from Experimental Reads.

PubMed

Kulsum, Umay; Kapil, Arti; Singh, Harpreet; Kaur, Punit

2018-01-01

Recent advancements in sequencing technologies have decreased both time span and cost for sequencing the whole bacterial genome. High-throughput Next-Generation Sequencing (NGS) technology has led to the generation of enormous data concerning microbial populations publically available across various repositories. As a consequence, it has become possible to study and compare the genomes of different bacterial strains within a species or genus in terms of evolution, ecology and diversity. Studying the pan-genome provides insights into deciphering microevolution, global composition and diversity in virulence and pathogenesis of a species. It can also assist in identifying drug targets and proposing vaccine candidates. The effective analysis of these large genome datasets necessitates the development of robust tools. Current methods to develop pan-genome do not support direct input of raw reads from the sequencer machine but require preprocessing of reads as an assembled protein/gene sequence file or the binary matrix of orthologous genes/proteins. We have designed an easy-to-use integrated pipeline, NGSPanPipe, which can directly identify the pan-genome from short reads. The output from the pipeline is compatible with other pan-genome analysis tools. We evaluated our pipeline with other methods for developing pan-genome, i.e. reference-based assembly and de novo assembly using simulated reads of Mycobacterium tuberculosis. The single script pipeline (pipeline.pl) is applicable for all bacterial strains. It integrates multiple in-house Perl scripts and is freely accessible from https://github.com/Biomedinformatics/NGSPanPipe .

Quarry blasts assessment and their environmental impacts on the nearby oil pipelines, southeast of Helwan City, Egypt

NASA Astrophysics Data System (ADS)

Mohamed, Adel M. E.; Mohamed, Abuo El-Ela A.

2013-06-01

Ground vibrations induced by blasting in the cement quarries are one of the fundamental problems in the quarrying industry and may cause severe damage to the nearby utilities and pipelines. Therefore, a vibration control study plays an important role in the minimization of environmental effects of blasting in quarries. The current paper presents the influence of the quarry blasts at the National Cement Company (NCC) on the two oil pipelines of SUMED Company southeast of Helwan City, by measuring the ground vibrations in terms of Peak Particle Velocity (PPV). The seismic refraction for compressional waves deduced from the shallow seismic survey and the shear wave velocity obtained from the Multi channel Analysis of Surface Waves (MASW) technique are used to evaluate the closest site of the two pipelines to the quarry blasts. The results demonstrate that, the closest site of the two pipelines is of class B, according to the National Earthquake Hazard Reduction Program (NEHRP) classification and the safe distance to avoid any environmental effects is 650 m, following the deduced Peak Particle Velocity (PPV) and scaled distance (SD) relationship (PPV = 700.08 × SD-1.225) in mm/s and the Air over Pressure (air blast) formula (air blast = 170.23 × SD-0.071) in dB. In the light of prediction analysis, the maximum allowable charge weight per delay was found to be 591 kg with damage criterion of 12.5 mm/s at the closest site of the SUMED pipelines.

MR-Tandem: parallel X!Tandem using Hadoop MapReduce on Amazon Web Services.

PubMed

Pratt, Brian; Howbert, J Jeffry; Tasman, Natalie I; Nilsson, Erik J

2012-01-01

MR-Tandem adapts the popular X!Tandem peptide search engine to work with Hadoop MapReduce for reliable parallel execution of large searches. MR-Tandem runs on any Hadoop cluster but offers special support for Amazon Web Services for creating inexpensive on-demand Hadoop clusters, enabling search volumes that might not otherwise be feasible with the compute resources a researcher has at hand. MR-Tandem is designed to drop in wherever X!Tandem is already in use and requires no modification to existing X!Tandem parameter files, and only minimal modification to X!Tandem-based workflows. MR-Tandem is implemented as a lightly modified X!Tandem C++ executable and a Python script that drives Hadoop clusters including Amazon Web Services (AWS) Elastic Map Reduce (EMR), using the modified X!Tandem program as a Hadoop Streaming mapper and reducer. The modified X!Tandem C++ source code is Artistic licensed, supports pluggable scoring, and is available as part of the Sashimi project at http://sashimi.svn.sourceforge.net/viewvc/sashimi/trunk/trans_proteomic_pipeline/extern/xtandem/. The MR-Tandem Python script is Apache licensed and available as part of the Insilicos Cloud Army project at http://ica.svn.sourceforge.net/viewvc/ica/trunk/mr-tandem/. Full documentation and a windows installer that configures MR-Tandem, Python and all necessary packages are available at this same URL. brian.pratt@insilicos.com

A De-Novo Genome Analysis Pipeline (DeNoGAP) for large-scale comparative prokaryotic genomics studies.

PubMed

Thakur, Shalabh; Guttman, David S

2016-06-30

Comparative analysis of whole genome sequence data from closely related prokaryotic species or strains is becoming an increasingly important and accessible approach for addressing both fundamental and applied biological questions. While there are number of excellent tools developed for performing this task, most scale poorly when faced with hundreds of genome sequences, and many require extensive manual curation. We have developed a de-novo genome analysis pipeline (DeNoGAP) for the automated, iterative and high-throughput analysis of data from comparative genomics projects involving hundreds of whole genome sequences. The pipeline is designed to perform reference-assisted and de novo gene prediction, homolog protein family assignment, ortholog prediction, functional annotation, and pan-genome analysis using a range of proven tools and databases. While most existing methods scale quadratically with the number of genomes since they rely on pairwise comparisons among predicted protein sequences, DeNoGAP scales linearly since the homology assignment is based on iteratively refined hidden Markov models. This iterative clustering strategy enables DeNoGAP to handle a very large number of genomes using minimal computational resources. Moreover, the modular structure of the pipeline permits easy updates as new analysis programs become available. DeNoGAP integrates bioinformatics tools and databases for comparative analysis of a large number of genomes. The pipeline offers tools and algorithms for annotation and analysis of completed and draft genome sequences. The pipeline is developed using Perl, BioPerl and SQLite on Ubuntu Linux version 12.04 LTS. Currently, the software package accompanies script for automated installation of necessary external programs on Ubuntu Linux; however, the pipeline should be also compatible with other Linux and Unix systems after necessary external programs are installed. DeNoGAP is freely available at https://sourceforge.net/projects/denogap/ .

Designing a reliable leak bio-detection system for natural gas pipelines.

PubMed

Batzias, F A; Siontorou, C G; Spanidis, P-M P

2011-02-15

Monitoring of natural gas (NG) pipelines is an important task for economical/safety operation, loss prevention and environmental protection. Timely and reliable leak detection of gas pipeline, therefore, plays a key role in the overall integrity management for the pipeline system. Owing to the various limitations of the currently available techniques and the surveillance area that needs to be covered, the research on new detector systems is still thriving. Biosensors are worldwide considered as a niche technology in the environmental market, since they afford the desired detector capabilities at low cost, provided they have been properly designed/developed and rationally placed/networked/maintained by the aid of operational research techniques. This paper addresses NG leakage surveillance through a robust cooperative/synergistic scheme between biosensors and conventional detector systems; the network is validated in situ and optimized in order to provide reliable information at the required granularity level. The proposed scheme is substantiated through a knowledge based approach and relies on Fuzzy Multicriteria Analysis (FMCA), for selecting the best biosensor design that suits both, the target analyte and the operational micro-environment. This approach is illustrated in the design of leak surveying over a pipeline network in Greece. Copyright © 2010 Elsevier B.V. All rights reserved.

INL Control System Situational Awareness Technology Annual Report 2012

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gordon Rueff; Bryce Wheeler; Todd Vollmer

The overall goal of this project is to develop an interoperable set of tools to provide a comprehensive, consistent implementation of cyber security and overall situational awareness of control and sensor network implementations. The operation and interoperability of these tools will fill voids in current technological offerings and address issues that remain an impediment to the security of control systems. This report provides an FY 2012 update on the Sophia, Mesh Mapper, Intelligent Cyber Sensor, and Data Fusion projects with respect to the year-two tasks and annual reporting requirements of the INL Control System Situational Awareness Technology report (July 2010).

Imaging ATUM ultrathin section libraries with WaferMapper: a multi-scale approach to EM reconstruction of neural circuits

PubMed Central

Hayworth, Kenneth J.; Morgan, Josh L.; Schalek, Richard; Berger, Daniel R.; Hildebrand, David G. C.; Lichtman, Jeff W.

2014-01-01

The automated tape-collecting ultramicrotome (ATUM) makes it possible to collect large numbers of ultrathin sections quickly—the equivalent of a petabyte of high resolution images each day. However, even high throughput image acquisition strategies generate images far more slowly (at present ~1 terabyte per day). We therefore developed WaferMapper, a software package that takes a multi-resolution approach to mapping and imaging select regions within a library of ultrathin sections. This automated method selects and directs imaging of corresponding regions within each section of an ultrathin section library (UTSL) that may contain many thousands of sections. Using WaferMapper, it is possible to map thousands of tissue sections at low resolution and target multiple points of interest for high resolution imaging based on anatomical landmarks. The program can also be used to expand previously imaged regions, acquire data under different imaging conditions, or re-image after additional tissue treatments. PMID:25018701

Landsat thematic mapper (TM) soil variability analysis over Webster County, Iowa

NASA Technical Reports Server (NTRS)

Thompson, D. R.; Henderson, K. E.; Pitts, D. E.

1984-01-01

Thematic mapper simulator (TMS) data acquired June 7, June 23, and July 31, 1982, and Landsat thematic mapper (TM) data acquired August 2, September 3, and October 21, 1982, over Webster County, Iowa, were examined for within-field soil effects on corn and soybean spectral signatures. It was found that patterns displayed on various computer-generated map products were in close agreement with the detailed soil survey of the area. The difference in spectral values appears to be due to a combination of subtle soil properties and crop growth patterns resulting from the different soil properties. Bands 4 (0.76-.90 micron), 5 (1.55-1.75 micron), and 7 (2.08-2.35 micron) were found to be responding to the within-field soil variability even with increasing ground cover. While these results are preliminary, they do indicate that the soil influence on the vegetation is being detected by TM and should provide improved information relating to crop and soil properties.

Data and Information Exchange System for the "Reindeer Mapper" Project

NASA Technical Reports Server (NTRS)

Maynard, Nancy; Yurchak, Boris

2005-01-01

During this past year, the Reindeer Mapper Intranet system has been set up on the NASA system, 8 team members have been established, a Reindeer Mapper reference list containing 696 items has been entered, 6 power point presentations have been put on line for review among team members, 304 satellite images have been catalogued (including 16 Landsat images, 288 NDVI 10-day composited images and an anomaly series- May 1998 to December 2002, and 56 SAR CEOS S A R format files), schedules and meeting dates are being shared, students at the Nordic Sami Institute are experimenting with the system for reindeer herder indigenous knowledge sharing, and an "address book" is being developed. Several documents and presentations have been translated and made available in Russian for our Russian colleagues. This has enabled our Russian partners to utilize documents and presentations for use in their research (e.g., SAR imagery comparisons with Russian GIS of specific study areas) and discussion with local colleagues.

Detecting air pollution stress in southern California vegetation using Landsat Thematic Mapper band data

NASA Technical Reports Server (NTRS)

Westman, Walter E.; Price, Curtis V.

1988-01-01

Landsat Thematic Mapper (TM) and aircraft-borne Thematic Mapper simulator (TMS) data were collected over two areas of natural vegetation in southern California exposed to gradients of pollutant dose, particularly in photochemical oxidants: the coastal sage scrub of the Santa Monica Mountains in the Los Angeles basin, and the yellow pine forests in the southern Sierra Nevada. In both situations, natural variations in canopy closure, with subsequent exposure of understory elements (e.g.,rock or soil, chaparral, grasses, and herbs), were sufficient to cause changes in spectral variation that could obscure differences due to visible foliar injury symptoms observed in the field. TM or TMS data are therefore more likely to be successful in distinguishing pollution injury from background variation when homogeneous communities with closed canopies are subjected to more severe pollution-induced structural and/or compositional change. The present study helps to define the threshold level of vegetative injury detectable by TM data.

Combined Effect of Alternating Current Interference and Cathodic Protection on Pitting Corrosion and Stress Corrosion Cracking Behavior of X70 Pipeline Steel in Near-Neutral pH Environment.

PubMed

Wang, Liwei; Cheng, Lianjun; Li, Junru; Zhu, Zhifu; Bai, Shuowei; Cui, Zhongyu

2018-03-22

Influence of alternating current (AC) on pitting corrosion and stress corrosion cracking (SCC) behavior of X70 pipeline steel in the near-neutral pH environment under cathodic protection (CP) was investigated. Both corrosion and SCC are inhibited by -0.775 V SCE CP without AC interference. With the superimposition of AC current (1-10 mA/cm²), the direct current (DC) potential shifts negatively under the CP of -0.775 V SCE and the cathodic DC current decreases and shifts to the anodic direction. Under the CP potential of -0.95 V SCE and -1.2 V SCE , the applied AC current promotes the cathodic reaction and leads to the positive shift of DC potential and increase of cathodic current. Local anodic dissolution occurs attributing to the generated anodic current transients in the positive half-cycle of the AC current, resulting in the initiation of corrosion pits (0.6-2 μm in diameter). AC enhances the SCC susceptibility of X70 steel under -0.775 V SCE CP, attributing to the promotion of anodic dissolution and hydrogen evolution. Even an AC current as low as 1 mA/cm² can enhance the SCC susceptibility.

Meeting medical terminology needs--the Ontology-Enhanced Medical Concept Mapper.

PubMed

Leroy, G; Chen, H

2001-12-01

This paper describes the development and testing of the Medical Concept Mapper, a tool designed to facilitate access to online medical information sources by providing users with appropriate medical search terms for their personal queries. Our system is valuable for patients whose knowledge of medical vocabularies is inadequate to find the desired information, and for medical experts who search for information outside their field of expertise. The Medical Concept Mapper maps synonyms and semantically related concepts to a user's query. The system is unique because it integrates our natural language processing tool, i.e., the Arizona (AZ) Noun Phraser, with human-created ontologies, the Unified Medical Language System (UMLS) and WordNet, and our computer generated Concept Space, into one system. Our unique contribution results from combining the UMLS Semantic Net with Concept Space in our deep semantic parsing (DSP) algorithm. This algorithm establishes a medical query context based on the UMLS Semantic Net, which allows Concept Space terms to be filtered so as to isolate related terms relevant to the query. We performed two user studies in which Medical Concept Mapper terms were compared against human experts' terms. We conclude that the AZ Noun Phraser is well suited to extract medical phrases from user queries, that WordNet is not well suited to provide strictly medical synonyms, that the UMLS Metathesaurus is well suited to provide medical synonyms, and that Concept Space is well suited to provide related medical terms, especially when these terms are limited by our DSP algorithm.

PMAnalyzer: a new web interface for bacterial growth curve analysis.

PubMed

Cuevas, Daniel A; Edwards, Robert A

2017-06-15

Bacterial growth curves are essential representations for characterizing bacteria metabolism within a variety of media compositions. Using high-throughput, spectrophotometers capable of processing tens of 96-well plates, quantitative phenotypic information can be easily integrated into the current data structures that describe a bacterial organism. The PMAnalyzer pipeline performs a growth curve analysis to parameterize the unique features occurring within microtiter wells containing specific growth media sources. We have expanded the pipeline capabilities and provide a user-friendly, online implementation of this automated pipeline. PMAnalyzer version 2.0 provides fast automatic growth curve parameter analysis, growth identification and high resolution figures of sample-replicate growth curves and several statistical analyses. PMAnalyzer v2.0 can be found at https://edwards.sdsu.edu/pmanalyzer/ . Source code for the pipeline can be found on GitHub at https://github.com/dacuevas/PMAnalyzer . Source code for the online implementation can be found on GitHub at https://github.com/dacuevas/PMAnalyzerWeb . dcuevas08@gmail.com. Supplementary data are available at Bioinformatics online. © The Author 2017. Published by Oxford University Press.

Identification of pathogen genomic variants through an integrated pipeline

PubMed Central

2014-01-01

Background Whole-genome sequencing represents a powerful experimental tool for pathogen research. We present methods for the analysis of small eukaryotic genomes, including a streamlined system (called Platypus) for finding single nucleotide and copy number variants as well as recombination events. Results We have validated our pipeline using four sets of Plasmodium falciparum drug resistant data containing 26 clones from 3D7 and Dd2 background strains, identifying an average of 11 single nucleotide variants per clone. We also identify 8 copy number variants with contributions to resistance, and report for the first time that all analyzed amplification events are in tandem. Conclusions The Platypus pipeline provides malaria researchers with a powerful tool to analyze short read sequencing data. It provides an accurate way to detect SNVs using known software packages, and a novel methodology for detection of CNVs, though it does not currently support detection of small indels. We have validated that the pipeline detects known SNVs in a variety of samples while filtering out spurious data. We bundle the methods into a freely available package. PMID:24589256

An efficient and scalable analysis framework for variant extraction and refinement from population-scale DNA sequence data.

PubMed

Jun, Goo; Wing, Mary Kate; Abecasis, Gonçalo R; Kang, Hyun Min

2015-06-01

The analysis of next-generation sequencing data is computationally and statistically challenging because of the massive volume of data and imperfect data quality. We present GotCloud, a pipeline for efficiently detecting and genotyping high-quality variants from large-scale sequencing data. GotCloud automates sequence alignment, sample-level quality control, variant calling, filtering of likely artifacts using machine-learning techniques, and genotype refinement using haplotype information. The pipeline can process thousands of samples in parallel and requires less computational resources than current alternatives. Experiments with whole-genome and exome-targeted sequence data generated by the 1000 Genomes Project show that the pipeline provides effective filtering against false positive variants and high power to detect true variants. Our pipeline has already contributed to variant detection and genotyping in several large-scale sequencing projects, including the 1000 Genomes Project and the NHLBI Exome Sequencing Project. We hope it will now prove useful to many medical sequencing studies. © 2015 Jun et al.; Published by Cold Spring Harbor Laboratory Press.

Reliability of drumlin morphometric data based on manual mapping - assessment of inter-mapper differences using a morphometrically diverse sample of relict drumlins

NASA Astrophysics Data System (ADS)

Jorge, Marco G.; Brennand, Tracy A.; Perkins, Andrew J.; Neudorf, Christina; Hillier, John K.; Cripps, Jonathan E.; Spagnolo, Matteo; Dinney, Meaghan; Storrar, Robert D.

2016-04-01

Mapper-dependent (subjective) differences in drumlin morphometry have received little attention even though over one-hundred thousand drumlins have been manually mapped and used to characterize drumlin morphometry and infer drumlin genesis, and several obstacles to objectivity in drumlin mapping can be identified. Due to uncertainty in drumlin genesis, drumlins remain putative morphogenetic landforms, yet still lack a complete single morphological definition. Additionally, post-formational degradation of relict subglacial landscapes challenges our ability: 1) to identify all drumlins in the landscape (some [potential] drumlins may be too degraded to be mapped and are thus excluded from the inventory), with implications for the analysis of field properties (e.g., spatial arrangement and autocorrelation); and 2) to accurately map the original footprint (i.e., shape and size). These issues (definitional ambiguity; degradation of original drumlin topography) are a problem for both manual and automated mapping. Automation is touted as the solution to the subjectivity of manual mapping, but the quality of any automated method directly depends on the quality of the operational definition (ruleset) it draws upon; if drumlin definitions are subjective (expert-dependent), so will be the automated algorithms relying on them. Additionally, recognizing highly degraded drumlins is, arguably, more difficult automatedly than manually (visually). Because a single morphologic definition is missing, mapping is expert-dependent. Therefore, quantifying the magnitude of inter-mapper differences is important for fully understanding the morphology of drumlins, constraining the robustness of drumlin morphometric inventories and assisting in the development of stricter operational definitions/mapping guidelines. We present the results of an experiment to quantify inter-mapper differences in mapped drumlin morphometry. All participants mapped 42 morphologically diverse drumlins in the Puget Lowland, WA at 2 spatial resolutions (1.8 m and 10.8 m cell size DEMs) in a GIS, using exactly the same base maps (analytical hillshade; semi-transparent elevation; contours) and informed by the same loose operational definition (e.g., drumlins delimited at their base by concave breaks in slope). Preliminary results (3 mappers) indicate that differences between manual mappers are substantial. For example, for the footprints mapped from the 10.8 m terrain data: average length ranges from 4603 m to 5454 m, and the mean absolute difference in length from 693 m to 1101 m; average elongation ratio (ER) ranges from 5.0 to 6.1; average footprint area ranges from 0.39 km2 to 0.50 km2.

The Evolution of a Long-Lived Mesoscale Convective System Observed by GLM

NASA Astrophysics Data System (ADS)

Peterson, M. J.; Rudlosky, S. D.; Antunes, L.

2017-12-01

Continuous Geostationary Lightning Mapper (GLM) observations are used to document total lightning activity over the life cycle of a long-lived Mesoscale Convective System (MCS). MCS's may be few in number, but they are important for the Global Electric Circuit (GEC) because they sustain high lightning flash rates and quasi steady state conduction currents (Wilson currents) over longer time periods than ordinary isolated convection. The optical characteristics of the flashes produced by MCS's change over time, providing additional insights into the precipitation structure, convective mode, and evolution of the storm system. These insights are particularly useful in areas void of radar observations. Intercalibrated passive microwave radiometer data from the Global Precipitation Measurement (GPM) constellation also are used to estimate changes in Wilson current generation as the system evolves. These results highlight the role of MCS's in the GEC, and showcase how optical flash descriptors relate to thunderstorm organization, maturity, and structure.

The CHARIS Integral Field Spectrograph with SCExAO: Data Reduction and Performance

NASA Astrophysics Data System (ADS)

Kasdin, N. Jeremy; Groff, Tyler; Brandt, Timothy; Currie, Thayne; Rizzo, Maxime; Chilcote, Jeffrey K.; Guyon, Olivier; Jovanovic, Nemanja; Lozi, Julien; Norris, Barnaby; Tamura, Motohide

2018-01-01

We summarize the data reduction pipeline and on-sky performance of the CHARIS Integral Field Spectrograph behind the SCExAO Adaptive Optics system on the Subaru Telescope. The open-source pipeline produces data cubes from raw detector reads using a Χ^2-based spectral extraction technique. It implements a number of advances, including a fit to the full nonlinear pixel response, suppression of up to a factor of ~2 in read noise, and deconvolution of the spectra with the line-spread function. The CHARIS team is currently developing the calibration and postprocessing software that will comprise the second component of the data reduction pipeline. Here, we show a range of CHARIS images, spectra, and contrast curves produced using provisional routines. CHARIS is now characterizing exoplanets simultaneously across the J, H, and K bands.

The Calibration Reference Data System

NASA Astrophysics Data System (ADS)

Greenfield, P.; Miller, T.

2016-07-01

We describe a software architecture and implementation for using rules to determine which calibration files are appropriate for calibrating a given observation. This new system, the Calibration Reference Data System (CRDS), replaces what had been previously used for the Hubble Space Telescope (HST) calibration pipelines, the Calibration Database System (CDBS). CRDS will be used for the James Webb Space Telescope (JWST) calibration pipelines, and is currently being used for HST calibration pipelines. CRDS can be easily generalized for use in similar applications that need a rules-based system for selecting the appropriate item for a given dataset; we give some examples of such generalizations that will likely be used for JWST. The core functionality of the Calibration Reference Data System is available under an Open Source license. CRDS is briefly contrasted with a sampling of other similar systems used at other observatories.

From maturity to value-added innovation: lessons from the pharmaceutical and agro-biotechnology industries.

PubMed

Mittra, James; Tait, Joyce; Wield, David

2011-03-01

The pharmaceutical and agro-biotechnology industries have been confronted by dwindling product pipelines and rapid developments in life sciences, thus demanding a strategic rethink of conventional research and development. Despite offering both industries a solution to the pipeline problem, the life sciences have also brought complex regulatory challenges for firms. In this paper, we comment on the response of these industries to the life science trajectory, in the context of maturing conventional small-molecule product pipelines and routes to market. The challenges of managing transition from maturity to new high-value-added innovation models are addressed. Furthermore, we argue that regulation plays a crucial role in shaping the innovation systems of both industries, and as such, we suggest potentially useful changes to the current regulatory system. Copyright © 2010 Elsevier Ltd. All rights reserved.

ORAC-DR: Overview and General Introduction

NASA Astrophysics Data System (ADS)

Economou, Frossie; Jenness, Tim; Currie, Malcolm J.; Adamson, Andy; Allan, Alasdair; Cavanagh, Brad

ORAC-DR is a general purpose automatic data reduction pipeline environment. It currently supports data reduction for the United Kingdom Infrared Telescope (UKIRT) instruments UFTI, IRCAM, UIST and CGS4, for the James Clerk Maxwell Telescope (JCMT) instrument SCUBA, for the William Herschel Telescope (WHT) instrument INGRID, for the European Southern Observatory (ESO) instrument ISAAC and for the Anglo-Australian Telescope (AAT) instrument IRIS-2. This document describes the general pipeline environment. For specific information on how to reduce the data for a particular instrument, please consult the appropriate ORAC-DR instrument guide.

Teachers and Teaching: Current Issues.

ERIC Educational Resources Information Center

Hart, J. R.

Nine chapters address current issues in teaching, focusing on: (1) "Teacher Quality and Quantity" (James B. Stedman); (2) "Progress Through the Teacher Pipeline" (Robin R. Henke, Xianglei Chen, Sonya Geis, and Paula Knepper); (3) "Raising the Achievement of Low-Performing Students: What High Schools Can Do" (Gene Bottoms); (4) "Knowledge and…

Innovative Sensors for Pipeline Crawlers: Rotating Permanent Magnet Inspection

DOE Office of Scientific and Technical Information (OSTI.GOV)

J. Bruce Nestleroth; Richard J. Davis; Stephanie Flamberg

2006-09-30

Internal inspection of pipelines is an important tool for ensuring safe and reliable delivery of fossil energy products. Current inspection systems that are propelled through the pipeline by the product flow cannot be used to inspect all pipelines because of the various physical barriers they may encounter. To facilitate inspection of these ''unpiggable'' pipelines, recent inspection development efforts have focused on a new generation of powered inspection platforms that are able to crawl slowly inside a pipeline and can maneuver past the physical barriers that limit internal inspection applicability, such as bore restrictions, low product flow rate, and low pressure.more » The first step in this research was to review existing inspection technologies for applicability and compatibility with crawler systems. Most existing inspection technologies, including magnetic flux leakage and ultrasonic methods, had significant implementation limitations including mass, physical size, inspection energy coupling requirements and technology maturity. The remote field technique was the most promising but power consumption was high and anomaly signals were low requiring sensitive detectors and electronics. After reviewing each inspection technology, it was decided to investigate the potential for a new inspection method. The new inspection method takes advantage of advances in permanent magnet strength, along with their wide availability and low cost. Called rotating permanent magnet inspection (RPMI), this patent pending technology employs pairs of permanent magnets rotating around the central axis of a cylinder to induce high current densities in the material under inspection. Anomalies and wall thickness variations are detected with an array of sensors that measure local changes in the magnetic field produced by the induced current flowing in the material. This inspection method is an alternative to the common concentric coil remote field technique that induces low-frequency eddy currents in ferromagnetic pipes and tubes. Since this is a new inspection method, both theory and experiment were used to determine fundamental capabilities and limitations. Fundamental finite element modeling analysis and experimental investigations performed during this development have led to the derivation of a first order analytical equation for designing rotating magnetizers to induce current and positioning sensors to record signals from anomalies. Experimental results confirm the analytical equation and the finite element calculations provide a firm basis for the design of RPMI systems. Experimental results have shown that metal loss anomalies and wall thickness variations can be detected with an array of sensors that measure local changes in the magnetic field produced by the induced current flowing in the material. The design exploits the phenomenon that circumferential currents are easily detectable at distances well away from the magnets. Current changes at anomalies were detectable with commercial low cost Hall Effect sensors. Commercial analog to digital converters can be used to measure the sensor output and data analysis can be performed in real time using PC computer systems. The technology was successfully demonstrated during two blind benchmark tests where numerous metal loss defects were detected. For this inspection technology, the detection threshold is a function of wall thickness and corrosion depth. For thinner materials, the detection threshold was experimentally shown to be comparable to magnetic flux leakage. For wall thicknesses greater than three tenths of an inch, the detection threshold increases with wall thickness. The potential for metal loss anomaly sizing was demonstrated in the second benchmarking study, again with accuracy comparable to existing magnetic flux leakage technologies. The rotating permanent magnet system has the potential for inspecting unpiggable pipelines since the magnetizer configurations can be sufficiently small with respect to the bore of the pipe to pass obstructions that limit the application of many inspection technologies. Also, since the largest dimension of the Hall Effect sensor is two tenths of an inch, the sensor packages can be small, flexible and light. The power consumption, on the order of ten watts, is low compared to some inspection systems; this would enable autonomous systems to inspect longer distances between charges. This project showed there are no technical barriers to building a field ready unit that can pass through narrow obstructions, such as plug valves. The next step in project implementation is to build a field ready unit that can begin to establish optimal performance capabilities including detection thresholds, sizing capability, and wall thickness limitations.« less

A preliminary comparison of Landsat Thematic Mapper and SPOT-1 HRV multispectral data for estimating coniferous forest volume

NASA Technical Reports Server (NTRS)

Ripple, William J.; Wang, S.; Isaacson, Dennis L.; Paine, D. P.

1995-01-01

Digital Landsat Thematic Mapper (TM) and Satellite Probatoire d'Observation de la Terre (SPOT) High Resolution Visible (HRV) images of coniferous forest canopies were compared in their relationship to forest wood volume using correlation and regression analyses. Significant inverse relationships were found between softwood volume and the spectral bands from both sensors (P less than 0.01). The highest correlations were between the log of softwood volume and the near-infrared bands (HRV band 3, r = -0.89; TM band 4, r = -0.83).

Registering Thematic Mapper imagery to digital elevation models

NASA Technical Reports Server (NTRS)

Frew, J.

1984-01-01

The problems encountered when attempting to register Landsat Thematic Mapper (TM) data to U.S. geological survey digital elevation models (DEMs) are examined. It is shown that TM and DEM data are not available in the same map projection, necessitating geometric transformation of one of the data type, that the TM data are not accurately located in their nominal projection, and that TM data have higher resolution than most DEM data, but oversampling the DEM data to TM resolution introduces systematic noise. Further work needed in this area is discussed.

Moon Mineralogy Mapper: Unlocking the Mysteries of the Moon

NASA Technical Reports Server (NTRS)

Runyon, Cassandra

2006-01-01

Moon Mineralogy Mapper (M3) is a state-of-the-art high spectral resolution imaging spectrometer that will characterize and map the mineral composition of the Moon. The M3 instrument will be flown on Chandrayaan-I, the Indian Space Research Organization (ISRO) mission to be launched in March 2008. The Moon is a cornerstone to understanding early solar system processes. M3 high-resolution compositional maps will dramatically improve our understanding about the early evolution of the terrestrial planets and will provide an assessment of lunar resources at high spatial resolution.

Three-dimensional displays for natural hazards analysis, using classified Landsat Thematic Mapper digital data and large-scale digital elevation models

NASA Technical Reports Server (NTRS)

Butler, David R.; Walsh, Stephen J.; Brown, Daniel G.

1991-01-01

Methods are described for using Landsat Thematic Mapper digital data and digital elevation models for the display of natural hazard sites in a mountainous region of northwestern Montana, USA. Hazard zones can be easily identified on the three-dimensional images. Proximity of facilities such as highways and building locations to hazard sites can also be easily displayed. A temporal sequence of Landsat TM (or similar) satellite data sets could also be used to display landscape changes associated with dynamic natural hazard processes.

An Analysis LANDSAT-4 Thematic Mapper Geometric Properties

NASA Technical Reports Server (NTRS)

Walker, R. E.; Zobrist, A. L.; Bryant, N. A.; Gokhman, B.; Friedman, S. Z.; Logan, T. L.

1984-01-01

LANDSAT Thematic Mapper P-data of Washington, D. C., Harrisburg, PA, and Salton Sea, CA are analyzed to determine magnitudes and causes of error in the geometric conformity of the data to known Earth surface geometry. Several tests of data geometry are performed. Intraband and interband correlation and registration are investigated, exclusive of map based ground truth. The magnitudes and statistical trends of pixel offsets between a single band's mirror scans (due to processing procedures) are computed, and the inter-band integrity of registration is analyzed. A line to line correlation analysis is included.

A prospectus for Thematic Mapper research in the Earth sciences

NASA Technical Reports Server (NTRS)

1984-01-01

Earth science applications of Thematic Mapper (TM) imagery are discussed. Prospective research themes are defined in a general sense in relation to the technical measurement capabilities of the TM and the various types of Earth information that can potentially be derived from multispectral TM imagery. An overview of the system developed to acquire and reduce TM data is presented. The technical capabilities of this system are presented in detail. The orbital performance of the TM sensor is described, based upon the analysis of LANDSAT 4 and 5 TM data collected to date.

Methods for destriping Landsat Thematic Mapper images - A feasibility study for an online destriping process in the Thematic Mapper Image Processing System (TIPS)

NASA Technical Reports Server (NTRS)

Poros, D. J.; Peterson, C. J.

1985-01-01

Methods for destriping TM images and results of the application of these methods to selected TM scenes with sensor and scan striping, which was not removed by the radiometric correction during the TM Archive Generation Phase in TIPS, are presented. These methods correct only for gain and offset differences between detectors over many image lines and do not consider within-line effects. The feasibility of implementing a destriping process online in TIPS is also described.

Spectral signature of alpine snow cover from the Landsat Thematic Mapper

NASA Technical Reports Server (NTRS)

Dozier, Jeff

1989-01-01

In rugged terrain, snow in the shadows can appear darker than soil or vegetation in the sunlight, making it difficult to interpret satellite data images of rugged terrains. This paper discusses methods for using Thematic Mapper (TM) and SPOT data for automatic analyses of alpine snow cover. Typical spectral signatures of the Landsat TM are analyzed for a range of snow types, atmospheric profiles, and topographic illumination conditions. A number of TM images of Sierra Nevada are analyzed to distinguish several classes of snow from other surface covers.

Landsat ecosystem disturbance adaptive processing system (LEDAPS) algorithm description

USGS Publications Warehouse

Schmidt, Gail; Jenkerson, Calli B.; Masek, Jeffrey; Vermote, Eric; Gao, Feng

2013-01-01

The Landsat Ecosystem Disturbance Adaptive Processing System (LEDAPS) software was originally developed by the National Aeronautics and Space Administration–Goddard Space Flight Center and the University of Maryland to produce top-of-atmosphere reflectance from LandsatThematic Mapper and Enhanced Thematic Mapper Plus Level 1 digital numbers and to apply atmospheric corrections to generate a surface-reflectance product.The U.S. Geological Survey (USGS) has adopted the LEDAPS algorithm for producing the Landsat Surface Reflectance Climate Data Record.This report discusses the LEDAPS algorithm, which was implemented by the USGS.

Analysis of nonlinear internal waves observed by Landsat thematic mapper

NASA Astrophysics Data System (ADS)

Artale, V.; Levi, D.; Marullo, S.; Santoleri, R.

1990-09-01

In this work we test the compatibility between the theoretical parameters of a nonlinear wave model and the quantitative information that one can deduce from satellite-derived data. The theoretical parameters are obtained by applying an inverse problem to the solution of the Cauchy problem for the Korteweg-de Vries equation. Our results are applied to the case of internal wave patterns elaborated from two different satellite sensors at the south of Messina (the thematic mapper) and at the north of Messina (the synthetic aperture radar).

Thematic mapper studies band correlation analysis

NASA Technical Reports Server (NTRS)

Ungar, S. G.; Kiang, R.

1976-01-01

Spectral data representative of thematic mapper candidate bands 1 and 3 to 7 were obtained by selecting appropriate combinations of bands from the JSC 24 channel multispectral scanner. Of all the bands assigned, only candidate bands 4 (.74 mu to .80 mu) and 5 (.80 mu to .91 mu) showed consistently high intercorrelation from region to region and time to time. This extremely high correlation persisted when looking at the composite data set in a multitemporal, multilocation domain. The GISS investigations lend positive confirmation to the hypothesis, that TM bands 4 and 5 are redundant.

Template-based and free modeling of I-TASSER and QUARK pipelines using predicted contact maps in CASP12.

PubMed

Zhang, Chengxin; Mortuza, S M; He, Baoji; Wang, Yanting; Zhang, Yang

2018-03-01

We develop two complementary pipelines, "Zhang-Server" and "QUARK", based on I-TASSER and QUARK pipelines for template-based modeling (TBM) and free modeling (FM), and test them in the CASP12 experiment. The combination of I-TASSER and QUARK successfully folds three medium-size FM targets that have more than 150 residues, even though the interplay between the two pipelines still awaits further optimization. Newly developed sequence-based contact prediction by NeBcon plays a critical role to enhance the quality of models, particularly for FM targets, by the new pipelines. The inclusion of NeBcon predicted contacts as restraints in the QUARK simulations results in an average TM-score of 0.41 for the best in top five predicted models, which is 37% higher than that by the QUARK simulations without contacts. In particular, there are seven targets that are converted from non-foldable to foldable (TM-score >0.5) due to the use of contact restraints in the simulations. Another additional feature in the current pipelines is the local structure quality prediction by ResQ, which provides a robust residue-level modeling error estimation. Despite the success, significant challenges still remain in ab initio modeling of multi-domain proteins and folding of β-proteins with complicated topologies bound by long-range strand-strand interactions. Improvements on domain boundary and long-range contact prediction, as well as optimal use of the predicted contacts and multiple threading alignments, are critical to address these issues seen in the CASP12 experiment. © 2017 Wiley Periodicals, Inc.

Natural Language Processing Accurately Calculates Adenoma and Sessile Serrated Polyp Detection Rates.

PubMed

Nayor, Jennifer; Borges, Lawrence F; Goryachev, Sergey; Gainer, Vivian S; Saltzman, John R

2018-07-01

ADR is a widely used colonoscopy quality indicator. Calculation of ADR is labor-intensive and cumbersome using current electronic medical databases. Natural language processing (NLP) is a method used to extract meaning from unstructured or free text data. (1) To develop and validate an accurate automated process for calculation of adenoma detection rate (ADR) and serrated polyp detection rate (SDR) on data stored in widely used electronic health record systems, specifically Epic electronic health record system, Provation ® endoscopy reporting system, and Sunquest PowerPath pathology reporting system. Screening colonoscopies performed between June 2010 and August 2015 were identified using the Provation ® reporting tool. An NLP pipeline was developed to identify adenomas and sessile serrated polyps (SSPs) on pathology reports corresponding to these colonoscopy reports. The pipeline was validated using a manual search. Precision, recall, and effectiveness of the natural language processing pipeline were calculated. ADR and SDR were then calculated. We identified 8032 screening colonoscopies that were linked to 3821 pathology reports (47.6%). The NLP pipeline had an accuracy of 100% for adenomas and 100% for SSPs. Mean total ADR was 29.3% (range 14.7-53.3%); mean male ADR was 35.7% (range 19.7-62.9%); and mean female ADR was 24.9% (range 9.1-51.0%). Mean total SDR was 4.0% (0-9.6%). We developed and validated an NLP pipeline that accurately and automatically calculates ADRs and SDRs using data stored in Epic, Provation ® and Sunquest PowerPath. This NLP pipeline can be used to evaluate colonoscopy quality parameters at both individual and practice levels.

Measuring success: Results from a national survey of recruitment and retention initiatives in the nursing workforce

PubMed Central

Carthon, J. Margo Brooks; Nguyen, Thai-Huy; Chittams, Jesse; Park, Elizabeth; Guevara, James

2015-01-01

Objectives The purpose of this study was to identify common components of diversity pipeline programs across a national sample of nursing institutions and determine what effect these programs have on increasing underrepresented minority enrollment and graduation. Design Linked data from an electronic survey conducted November 2012 to March 2013 and American Association of Colleges of Nursing baccalaureate graduation and enrollment data (2008 and 2012). Participants Academic and administrative staff of 164 nursing schools in 26 states, including Puerto Rico in the United States. Methods Chi-square statistics were used to (1) describe organizational features of nursing diversity pipeline programs and (2) determine significant trends in underrepresented minorities’ graduation and enrollment between nursing schools with and without diversity pipeline programs Results Twenty percent (n = 33) of surveyed nursing schools reported a structured diversity pipeline program. The most frequent program measures associated with pipeline programs included mentorship, academic, and psychosocial support. Asian, Hispanic, and Native Hawaiian/Pacific Islander nursing student enrollment increased between 2008 and 2012. Hispanic/Latino graduation rates increased (7.9%–10.4%, p = .001), but they decreased among Black (6.8%–5.0%, p = .004) and Native American/Pacific Islander students (2.1 %–0.3%, p ≥ .001). Conclusions Nursing diversity pipeline programs are associated with increases in nursing school enrollment and graduation for some, although not all, minority students. Future initiatives should build on current trends while creating targeted strategies to reverse downward graduation trends among Black, Native American, and Pacific Island nursing students. PMID:24880900

Fast parallel algorithm for slicing STL based on pipeline

NASA Astrophysics Data System (ADS)

Ma, Xulong; Lin, Feng; Yao, Bo

2016-05-01

In Additive Manufacturing field, the current researches of data processing mainly focus on a slicing process of large STL files or complicated CAD models. To improve the efficiency and reduce the slicing time, a parallel algorithm has great advantages. However, traditional algorithms can't make full use of multi-core CPU hardware resources. In the paper, a fast parallel algorithm is presented to speed up data processing. A pipeline mode is adopted to design the parallel algorithm. And the complexity of the pipeline algorithm is analyzed theoretically. To evaluate the performance of the new algorithm, effects of threads number and layers number are investigated by a serial of experiments. The experimental results show that the threads number and layers number are two remarkable factors to the speedup ratio. The tendency of speedup versus threads number reveals a positive relationship which greatly agrees with the Amdahl's law, and the tendency of speedup versus layers number also keeps a positive relationship agreeing with Gustafson's law. The new algorithm uses topological information to compute contours with a parallel method of speedup. Another parallel algorithm based on data parallel is used in experiments to show that pipeline parallel mode is more efficient. A case study at last shows a suspending performance of the new parallel algorithm. Compared with the serial slicing algorithm, the new pipeline parallel algorithm can make full use of the multi-core CPU hardware, accelerate the slicing process, and compared with the data parallel slicing algorithm, the new slicing algorithm in this paper adopts a pipeline parallel model, and a much higher speedup ratio and efficiency is achieved.

Measuring success: results from a national survey of recruitment and retention initiatives in the nursing workforce.

PubMed

Brooks Carthon, J Margo; Nguyen, Thai-Huy; Chittams, Jesse; Park, Elizabeth; Guevara, James

2014-01-01

The purpose of this study was to identify common components of diversity pipeline programs across a national sample of nursing institutions and determine what effect these programs have on increasing underrepresented minority enrollment and graduation. Linked data from an electronic survey conducted November 2012 to March 2013 and American Association of Colleges of Nursing baccalaureate graduation and enrollment data (2008 and 2012). Academic and administrative staff of 164 nursing schools in 26 states, including Puerto Rico in the United States. Chi-square statistics were used to (1) describe organizational features of nursing diversity pipeline programs and (2) determine significant trends in underrepresented minorities' graduation and enrollment between nursing schools with and without diversity pipeline programs Twenty percent (n = 33) of surveyed nursing schools reported a structured diversity pipeline program. The most frequent program measures associated with pipeline programs included mentorship, academic, and psychosocial support. Asian, Hispanic, and Native Hawaiian/Pacific Islander nursing student enrollment increased between 2008 and 2012. Hispanic/Latino graduation rates increased (7.9%-10.4%, p = .001), but they decreased among Black (6.8%-5.0%, p = .004) and Native American/Pacific Islander students (2.1 %-0.3%, p ≥ .001). Nursing diversity pipeline programs are associated with increases in nursing school enrollment and graduation for some, although not all, minority students. Future initiatives should build on current trends while creating targeted strategies to reverse downward graduation trends among Black, Native American, and Pacific Island nursing students. Copyright © 2014 Elsevier Inc. All rights reserved.

A real-time coherent dedispersion pipeline for the giant metrewave radio telescope

NASA Astrophysics Data System (ADS)

De, Kishalay; Gupta, Yashwant

2016-02-01

A fully real-time coherent dedispersion system has been developed for the pulsar back-end at the Giant Metrewave Radio Telescope (GMRT). The dedispersion pipeline uses the single phased array voltage beam produced by the existing GMRT software back-end (GSB) to produce coherently dedispersed intensity output in real time, for the currently operational bandwidths of 16 MHz and 32 MHz. Provision has also been made to coherently dedisperse voltage beam data from observations recorded on disk. We discuss the design and implementation of the real-time coherent dedispersion system, describing the steps carried out to optimise the performance of the pipeline. Presently functioning on an Intel Xeon X5550 CPU equipped with a NVIDIA Tesla C2075 GPU, the pipeline allows dispersion free, high time resolution data to be obtained in real-time. We illustrate the significant improvements over the existing incoherent dedispersion system at the GMRT, and present some preliminary results obtained from studies of pulsars using this system, demonstrating its potential as a useful tool for low frequency pulsar observations. We describe the salient features of our implementation, comparing it with other recently developed real-time coherent dedispersion systems. This implementation of a real-time coherent dedispersion pipeline for a large, low frequency array instrument like the GMRT, will enable long-term observing programs using coherent dedispersion to be carried out routinely at the observatory. We also outline the possible improvements for such a pipeline, including prospects for the upgraded GMRT which will have bandwidths about ten times larger than at present.

Evaluation of Underwater Adhesives and Friction Coatings for In Situ Attachment of Fiber Optic Sensor System for Subsea Applications

NASA Technical Reports Server (NTRS)

Tang, Henry H.; Le, Suy Q.; Orndoff, Evelyne S.; Smith, Frederick D.; Tapia, Alma S.; Brower, David V.

2012-01-01

Integrity and performance monitoring of subsea pipelines and structures provides critical information for managing offshore oil and gas production operation and preventing environmentally damaging and costly catastrophic failure. Currently pipeline monitoring devices require ground assembly and installation prior to the underwater deployment of the pipeline. A monitoring device that could be installed in situ on the operating underwater structures could enhance the productivity and improve the safety of current offshore operation. Through a Space Act Agreement (SAA) between the National Aeronautics and Space Administration (NASA) Johnson Space Center (JSC) and Astro Technology, Inc. (ATI), JSC provides technical expertise and testing facilities to support the development of fiber optic sensor technologies by ATI. This paper details the first collaboration effort between NASA JSC and ATI in evaluating underwater applicable adhesives and friction coatings for attaching fiber optic sensor system to subsea pipeline. A market survey was conducted to examine different commercial ]off ]the ]shelf (COTS) underwater adhesive systems and to select adhesive candidates for testing and evaluation. Four COTS epoxy based underwater adhesives were selected and evaluated. The adhesives were applied and cured in simulated seawater conditions and then evaluated for application characteristics and adhesive strength. The adhesive that demonstrated the best underwater application characteristics and highest adhesive strength were identified for further evaluation in developing an attachment system that could be deployed in the harsh subsea environment. Various friction coatings were also tested in this study to measure their shear strengths for a mechanical clamping design concept for attaching fiber optic sensor system. A COTS carbide alloy coating was found to increase the shear strength of metal to metal clamping interface by up to 46 percent. This study provides valuable data for assessing the feasibility of developing the next generation fiber optic senor system that could be retrofitted onto existing subsea pipeline structures.

Natural gas encasement for highway crossings.

DOT National Transportation Integrated Search

2015-03-01

The University Transportation Center for Alabama researchers examined the Alabama Department of : Transportations current policy regarding the encasement of natural gas and hazardous liquid pipelines at roadway : crossings. The group collected inf...

dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms.

PubMed

Puritz, Jonathan B; Hollenbeck, Christopher M; Gold, John R

2014-01-01

Restriction-site associated DNA sequencing (RADseq) has become a powerful and useful approach for population genomics. Currently, no software exists that utilizes both paired-end reads from RADseq data to efficiently produce population-informative variant calls, especially for non-model organisms with large effective population sizes and high levels of genetic polymorphism. dDocent is an analysis pipeline with a user-friendly, command-line interface designed to process individually barcoded RADseq data (with double cut sites) into informative SNPs/Indels for population-level analyses. The pipeline, written in BASH, uses data reduction techniques and other stand-alone software packages to perform quality trimming and adapter removal, de novo assembly of RAD loci, read mapping, SNP and Indel calling, and baseline data filtering. Double-digest RAD data from population pairings of three different marine fishes were used to compare dDocent with Stacks, the first generally available, widely used pipeline for analysis of RADseq data. dDocent consistently identified more SNPs shared across greater numbers of individuals and with higher levels of coverage. This is due to the fact that dDocent quality trims instead of filtering, incorporates both forward and reverse reads (including reads with INDEL polymorphisms) in assembly, mapping, and SNP calling. The pipeline and a comprehensive user guide can be found at http://dDocent.wordpress.com.

dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms

PubMed Central

Hollenbeck, Christopher M.; Gold, John R.

2014-01-01

Restriction-site associated DNA sequencing (RADseq) has become a powerful and useful approach for population genomics. Currently, no software exists that utilizes both paired-end reads from RADseq data to efficiently produce population-informative variant calls, especially for non-model organisms with large effective population sizes and high levels of genetic polymorphism. dDocent is an analysis pipeline with a user-friendly, command-line interface designed to process individually barcoded RADseq data (with double cut sites) into informative SNPs/Indels for population-level analyses. The pipeline, written in BASH, uses data reduction techniques and other stand-alone software packages to perform quality trimming and adapter removal, de novo assembly of RAD loci, read mapping, SNP and Indel calling, and baseline data filtering. Double-digest RAD data from population pairings of three different marine fishes were used to compare dDocent with Stacks, the first generally available, widely used pipeline for analysis of RADseq data. dDocent consistently identified more SNPs shared across greater numbers of individuals and with higher levels of coverage. This is due to the fact that dDocent quality trims instead of filtering, incorporates both forward and reverse reads (including reads with INDEL polymorphisms) in assembly, mapping, and SNP calling. The pipeline and a comprehensive user guide can be found at http://dDocent.wordpress.com. PMID:24949246

Toward modeling locomotion using electromyography-informed 3D models: application to cerebral palsy.

PubMed

Sartori, M; Fernandez, J W; Modenese, L; Carty, C P; Barber, L A; Oberhofer, K; Zhang, J; Handsfield, G G; Stott, N S; Besier, T F; Farina, D; Lloyd, D G

2017-03-01

This position paper proposes a modeling pipeline to develop clinically relevant neuromusculoskeletal models to understand and treat complex neurological disorders. Although applicable to a variety of neurological conditions, we provide direct pipeline applicative examples in the context of cerebral palsy (CP). This paper highlights technologies in: (1) patient-specific segmental rigid body models developed from magnetic resonance imaging for use in inverse kinematics and inverse dynamics pipelines; (2) efficient population-based approaches to derive skeletal models and muscle origins/insertions that are useful for population statistics and consistent creation of continuum models; (3) continuum muscle descriptions to account for complex muscle architecture including spatially varying material properties with muscle wrapping; (4) muscle and tendon properties specific to CP; and (5) neural-based electromyography-informed methods for muscle force prediction. This represents a novel modeling pipeline that couples for the first time electromyography extracted features of disrupted neuromuscular behavior with advanced numerical methods for modeling CP-specific musculoskeletal morphology and function. The translation of such pipeline to the clinical level will provide a new class of biomarkers that objectively describe the neuromusculoskeletal determinants of pathological locomotion and complement current clinical assessment techniques, which often rely on subjective judgment. WIREs Syst Biol Med 2017, 9:e1368. doi: 10.1002/wsbm.1368 For further resources related to this article, please visit the WIREs website. © 2016 Wiley Periodicals, Inc.

Automated processing pipeline for neonatal diffusion MRI in the developing Human Connectome Project.

PubMed

Bastiani, Matteo; Andersson, Jesper L R; Cordero-Grande, Lucilio; Murgasova, Maria; Hutter, Jana; Price, Anthony N; Makropoulos, Antonios; Fitzgibbon, Sean P; Hughes, Emer; Rueckert, Daniel; Victor, Suresh; Rutherford, Mary; Edwards, A David; Smith, Stephen M; Tournier, Jacques-Donald; Hajnal, Joseph V; Jbabdi, Saad; Sotiropoulos, Stamatios N

2018-05-28

The developing Human Connectome Project is set to create and make available to the scientific community a 4-dimensional map of functional and structural cerebral connectivity from 20 to 44 weeks post-menstrual age, to allow exploration of the genetic and environmental influences on brain development, and the relation between connectivity and neurocognitive function. A large set of multi-modal MRI data from fetuses and newborn infants is currently being acquired, along with genetic, clinical and developmental information. In this overview, we describe the neonatal diffusion MRI (dMRI) image processing pipeline and the structural connectivity aspect of the project. Neonatal dMRI data poses specific challenges, and standard analysis techniques used for adult data are not directly applicable. We have developed a processing pipeline that deals directly with neonatal-specific issues, such as severe motion and motion-related artefacts, small brain sizes, high brain water content and reduced anisotropy. This pipeline allows automated analysis of in-vivo dMRI data, probes tissue microstructure, reconstructs a number of major white matter tracts, and includes an automated quality control framework that identifies processing issues or inconsistencies. We here describe the pipeline and present an exemplar analysis of data from 140 infants imaged at 38-44 weeks post-menstrual age. Copyright © 2018 The Authors. Published by Elsevier Inc. All rights reserved.

The Tuberculosis Drug Discovery and Development Pipeline and Emerging Drug Targets

PubMed Central

Mdluli, Khisimuzi; Kaneko, Takushi; Upton, Anna

2015-01-01

The recent accelerated approval for use in extensively drug-resistant and multidrug-resistant-tuberculosis (MDR-TB) of two first-in-class TB drugs, bedaquiline and delamanid, has reinvigorated the TB drug discovery and development field. However, although several promising clinical development programs are ongoing to evaluate new TB drugs and regimens, the number of novel series represented is few. The global early-development pipeline is also woefully thin. To have a chance of achieving the goal of better, shorter, safer TB drug regimens with utility against drug-sensitive and drug-resistant disease, a robust and diverse global TB drug discovery pipeline is key, including innovative approaches that make use of recently acquired knowledge on the biology of TB. Fortunately, drug discovery for TB has resurged in recent years, generating compounds with varying potential for progression into developable leads. In parallel, advances have been made in understanding TB pathogenesis. It is now possible to apply the lessons learned from recent TB hit generation efforts and newly validated TB drug targets to generate the next wave of TB drug leads. Use of currently underexploited sources of chemical matter and lead-optimization strategies may also improve the efficiency of future TB drug discovery. Novel TB drug regimens with shorter treatment durations must target all subpopulations of Mycobacterium tuberculosis existing in an infection, including those responsible for the protracted TB treatment duration. This review summarizes the current TB drug development pipeline and proposes strategies for generating improved hits and leads in the discovery phase that could help achieve this goal. PMID:25635061

FIGENIX: Intelligent automation of genomic annotation: expertise integration in a new software platform

PubMed Central

Gouret, Philippe; Vitiello, Vérane; Balandraud, Nathalie; Gilles, André; Pontarotti, Pierre; Danchin, Etienne GJ

2005-01-01

Background Two of the main objectives of the genomic and post-genomic era are to structurally and functionally annotate genomes which consists of detecting genes' position and structure, and inferring their function (as well as of other features of genomes). Structural and functional annotation both require the complex chaining of numerous different software, algorithms and methods under the supervision of a biologist. The automation of these pipelines is necessary to manage huge amounts of data released by sequencing projects. Several pipelines already automate some of these complex chaining but still necessitate an important contribution of biologists for supervising and controlling the results at various steps. Results Here we propose an innovative automated platform, FIGENIX, which includes an expert system capable to substitute to human expertise at several key steps. FIGENIX currently automates complex pipelines of structural and functional annotation under the supervision of the expert system (which allows for example to make key decisions, check intermediate results or refine the dataset). The quality of the results produced by FIGENIX is comparable to those obtained by expert biologists with a drastic gain in terms of time costs and avoidance of errors due to the human manipulation of data. Conclusion The core engine and expert system of the FIGENIX platform currently handle complex annotation processes of broad interest for the genomic community. They could be easily adapted to new, or more specialized pipelines, such as for example the annotation of miRNAs, the classification of complex multigenic families, annotation of regulatory elements and other genomic features of interest. PMID:16083500

Optimal design of a gas transmission network: A case study of the Turkish natural gas pipeline network system

NASA Astrophysics Data System (ADS)

Gunes, Ersin Fatih

Turkey is located between Europe, which has increasing demand for natural gas and the geographies of Middle East, Asia and Russia, which have rich and strong natural gas supply. Because of the geographical location, Turkey has strategic importance according to energy sources. To supply this demand, a pipeline network configuration with the optimal and efficient lengths, pressures, diameters and number of compressor stations is extremely needed. Because, Turkey has a currently working and constructed network topology, obtaining an optimal configuration of the pipelines, including an optimal number of compressor stations with optimal locations, is the focus of this study. Identifying a network design with lowest costs is important because of the high maintenance and set-up costs. The quantity of compressor stations, the pipeline segments' lengths, the diameter sizes and pressures at compressor stations, are considered to be decision variables in this study. Two existing optimization models were selected and applied to the case study of Turkey. Because of the fixed cost of investment, both models are formulated as mixed integer nonlinear programs, which require branch and bound combined with the nonlinear programming solution methods. The differences between these two models are related to some factors that can affect the network system of natural gas such as wall thickness, material balance compressor isentropic head and amount of gas to be delivered. The results obtained by these two techniques are compared with each other and with the current system. Major differences between results are costs, pressures and flow rates. These solution techniques are able to find a solution with minimum cost for each model both of which are less than the current cost of the system while satisfying all the constraints on diameter, length, flow rate and pressure. These results give the big picture of an ideal configuration for the future state network for the country of Turkey.

CATS landline installed beneath the river Tees

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

Press Construction Ltd. has completed installation of the land portion of a new gas pipeline from the North Sea, including a tunnel beneath the River Tees in the north of England. The work was carried out under a multi-million dollar contract from Amoco (UK) Exploration Co. The pipeline is the land portion of the Central Area Transmission System. The 4.6-mile, 36-in. onshore pipeline connects a valve station at the CATS landfall at Coatham Sands, just south of Tees Bay, to a gas terminal north of the River Tees. This paper reports on the entire CATS system which runs for nearlymore » 250 miles from a riser platform in the Central Graben area of the North Sea to the Coatham Sands landfall and then overland to the gas terminal. The gas will fuel a new combined heat-and-power generating plant on Teesside, currently under construction by Teesside Power.« less

A First Step towards a Clinical Decision Support System for Post-traumatic Stress Disorders.

PubMed

Ma, Sisi; Galatzer-Levy, Isaac R; Wang, Xuya; Fenyö, David; Shalev, Arieh Y

2016-01-01

PTSD is distressful and debilitating, following a non-remitting course in about 10% to 20% of trauma survivors. Numerous risk indicators of PTSD have been identified, but individual level prediction remains elusive. As an effort to bridge the gap between scientific discovery and practical application, we designed and implemented a clinical decision support pipeline to provide clinically relevant recommendation for trauma survivors. To meet the specific challenge of early prediction, this work uses data obtained within ten days of a traumatic event. The pipeline creates personalized predictive model for each individual, and computes quality metrics for each predictive model. Clinical recommendations are made based on both the prediction of the model and its quality, thus avoiding making potentially detrimental recommendations based on insufficient information or suboptimal model. The current pipeline outperforms the acute stress disorder, a commonly used clinical risk factor for PTSD development, both in terms of sensitivity and specificity.

New Research on MEMS Acoustic Vector Sensors Used in Pipeline Ground Markers

PubMed Central

Song, Xiaopeng; Jian, Zeming; Zhang, Guojun; Liu, Mengran; Guo, Nan; Zhang, Wendong

2015-01-01

According to the demands of current pipeline detection systems, the above-ground marker (AGM) system based on sound detection principle has been a major development trend in pipeline technology. A novel MEMS acoustic vector sensor for AGM systems which has advantages of high sensitivity, high signal-to-noise ratio (SNR), and good low frequency performance has been put forward. Firstly, it is presented that the frequency of the detected sound signal is concentrated in a lower frequency range, and the sound attenuation is relatively low in soil. Secondly, the MEMS acoustic vector sensor structure and basic principles are introduced. Finally, experimental tests are conducted and the results show that in the range of 0°∼90°, when r = 5 m, the proposed MEMS acoustic vector sensor can effectively detect sound signals in soil. The measurement errors of all angles are less than 5°. PMID:25609046

VA Pipeline for Future Nurse Leaders: an Exploration of Current Nurse Leadership Development in the Veteran’s Health Administration

DTIC Science & Technology

2016-06-10

Democratic Society White House Leadership Development Program (WHLD) Harvard Kennedy School (HKS)–Senior Executive Fellows Program George......Nurse Leaders: An Exploration of Current Nurse Leadership Development in the Veterans Health Administration 5a. CONTRACT NUMBER 5b. GRANT NUMBER

REVIEW ARTICLE: Current trends and future requirements for the mass spectrometric investigation of microbial, mammalian and plant metabolomes

NASA Astrophysics Data System (ADS)

Dunn, Warwick B.

2008-03-01

The functional levels of biological cells or organisms can be separated into the genome, transcriptome, proteome and metabolome. Of these the metabolome offers specific advantages to the investigation of the phenotype of biological systems. The investigation of the metabolome (metabolomics) has only recently appeared as a mainstream scientific discipline and is currently developing rapidly for the study of microbial, plant and mammalian metabolomes. The metabolome pipeline or workflow encompasses the processes of sample collection and preparation, collection of analytical data, raw data pre-processing, data analysis and data storage. Of these processes the collection of analytical data will be discussed in this review with specific interest shown in the application of mass spectrometry in the metabolomics pipeline. The current developments in mass spectrometry platforms (GC-MS, LC-MS, DIMS and imaging MS) and applications of specific interest will be highlighted. The current limitations of these platforms and applications will be discussed with areas requiring further development also highlighted. These include the detectable coverage of the metabolome, the identification of metabolites and the process of converting raw data to biological knowledge.

Cosmic Dawn Intensity Mapper (CDIM): a New Probe of Cosmic Dawn and Reionization

NASA Astrophysics Data System (ADS)

Chang, Tzu-Ching; CDIM Team

2018-01-01

The Cosmic Dawn Intensity Mapper, CDIM, is a NASA Probe-class Mission Study currently under study. CDIM is designed to be a near-IR survey instrument optimized for Cosmic Dawn and reionization sciences, answering critical questions on how and when galaxies and quasars first formed, the history of metal build-up, and the history and topology of reionization, among other questions. CDIM will provide R=300 spectroscopic imaging over ~10 sq. degree instantaneous field of view at 1 arcsecond resolution, over the wavelength range of 0.75 to 7.5 mm. A two-tiered wedding-cake survey will consist of a shallow tier spanning close to 300 deg2 and a deep tier of about 25 deg2. CDIM survey data will allow us to (i) determine spectroscopic redshifts of WFIRST-detected Lyman-break galaxies (LBGs) out to a redshift of 10; (ii) establish the environmental dependence of star formation during reionization through clustering and other environmental measurements; (iii) establish the metal abundance of first-light galaxies during reionization over two decades of stellar mass by spectrally separating NII from Hα, and detecting both Hβ and [OIII]; (iv) measure 3D tomographic intensity fluctuations during reionization in both Lyα at z > 6 and Hα at 0 < z < 10; and (v) cross-correlating intensity fluctuations with 21-cm data to establish the topology of reionization bubbles.

Synthetic Stellar Photometry - II. Testing the bolometric flux scale and tables of bolometric corrections for the Hipparcos/Tycho, Pan-STARRS1, SkyMapper, and JWST systems

NASA Astrophysics Data System (ADS)

Casagrande, L.; VandenBerg, Don A.

2018-04-01

We use MARCS model atmosphere fluxes to compute synthetic colours, bolometric corrections and reddening coefficients for the Hipparcos/Tycho, Pan-STARRS1, SkyMapper, and JWST systems. Tables and interpolation subroutines are provided to transform isochrones from the theoretical to various observational planes, to derive bolometric corrections, synthetic colours and colour-temperature relations at nearly any given point of the HR diagram for 2600 K ≤ Teff ≤ 8000 K, and different values of reddening in 85 photometric filters. We use absolute spectrophotometry from the CALSPEC library to show that bolometric fluxes can be recovered to ˜2 per cent from bolometric corrections in a single band, when input stellar parameters are well known for FG dwarfs at various metallicities. This sole source of uncertainty impacts interferometric Teff to ≃0.5 per cent (or 30 K at the solar temperature). Uncertainties are halved when combining bolometric corrections in more bands, and limited by the fundamental uncertainty of the current absolute flux scale at 1 per cent. Stars in the RAVE DR5 catalogue are used to validate the quality of our MARCS synthetic photometry in selected filters across the optical and infrared range. This investigation shows that extant MARCS synthetic fluxes are able to reproduce the main features observed in stellar populations across the Galactic disc.

Evaluation of SLAR and simulated thematic mapper MSS data for forest cover mapping using computer-aided analysis techniques

NASA Technical Reports Server (NTRS)

Hoffer, R. M.; Dean, M. E.; Knowlton, D. J.; Latty, R. S.

1982-01-01

Kershaw County, South Carolina was selected as the study site for analyzing simulated thematic mapper MSS data and dual-polarized X-band synthetic aperture radar (SAR) data. The impact of the improved spatial and spectral characteristics of the LANDSAT D thematic mapper data on computer aided analysis for forest cover type mapping was examined as well as the value of synthetic aperture radar data for differentiating forest and other cover types. The utility of pattern recognition techniques for analyzing SAR data was assessed. Topics covered include: (1) collection and of TMS and reference data; (2) reformatting, geometric and radiometric rectification, and spatial resolution degradation of TMS data; (3) development of training statistics and test data sets; (4) evaluation of different numbers and combinations of wavelength bands on classification performance; (5) comparison among three classification algorithms; and (6) the effectiveness of the principal component transformation in data analysis. The collection, digitization, reformatting, and geometric adjustment of SAR data are also discussed. Image interpretation results and classification results are presented.

Remote sensing of coastal wetlands biomass using Thematic Mapper wavebands

NASA Technical Reports Server (NTRS)

Hardisky, M. A.; Klemas, V.

1985-01-01

Spectral data, simulating thematic mapper bands 3, 4 and 5 are gathered in salt and brackish marshes using a hand-held radiometer. Simple regression models are developed equating spectral radiance indices with total live biomass for S. alterniflora in a salt marsh and for a variety of plant species in a brackish marsh. Models are then tested using an independent set of data and compared to harvest estimates of biomass. In the salt marsh, biomass estimates from spectral data are similar to harvest biomass estimates during most of the growing season. Estimates of annual net aerial primary productivity calculated from spectral data are within 21% of production estimated from harvest data. During August, biomass estimates from spectral data in the brackish marsh are similar to biomass estimated by harvesting techniques. At other times during the growing season, spectral data estimates of biomass are not always comparable to harvest biomass estimates. Reasonable estimates of wetlands biomass are possible during the peak of the growing season (August) using spectral data similar to thematic mapper bands 3, 4 and 5 gathered with hand-held radiometers.

The effects of hydrogen embrittlement by cathodic protection on the CTOD of buried natural gas pipeline

NASA Astrophysics Data System (ADS)

Kim, Cheol-man; Kim, Woo-sik; Kho, Young-tai

2002-04-01

For the corrosion protection of natural gas transmission pipelines, two methods are used, cathodic protection and a coating technique. In the case of cathodic protection, defects are embrittled by hydrogen occurring at crack tips or surfaces of materials. It is, however, very important to evaluate whether cracks in the embrittled area can grow or not, especially in weld metal. In this work, on the basis of elastic plastic fracture mechanics, we performed CTOD testing under various test conditions, such as potential and current density. The CTOD of the base steel and weld metal showed a strong dependence on the test conditions. The CTOD decreased with increasing cathodic potential and current density. The morphology of the fracture surface showed quasi-cleavage. Cathodic overprotection results in hydrogen embrittlement at the crack tip.

Defect Detection and Segmentation Framework for Remote Field Eddy Current Sensor Data

PubMed Central

2017-01-01

Remote-Field Eddy-Current (RFEC) technology is often used as a Non-Destructive Evaluation (NDE) method to prevent water pipe failures. By analyzing the RFEC data, it is possible to quantify the corrosion present in pipes. Quantifying the corrosion involves detecting defects and extracting their depth and shape. For large sections of pipelines, this can be extremely time-consuming if performed manually. Automated approaches are therefore well motivated. In this article, we propose an automated framework to locate and segment defects in individual pipe segments, starting from raw RFEC measurements taken over large pipelines. The framework relies on a novel feature to robustly detect these defects and a segmentation algorithm applied to the deconvolved RFEC signal. The framework is evaluated using both simulated and real datasets, demonstrating its ability to efficiently segment the shape of corrosion defects. PMID:28984823

Robust Mosaicking of Stereo Digital Elevation Models from the Ames Stereo Pipeline

NASA Technical Reports Server (NTRS)

Kim, Tae Min; Moratto, Zachary M.; Nefian, Ara Victor

2010-01-01

Robust estimation method is proposed to combine multiple observations and create consistent, accurate, dense Digital Elevation Models (DEMs) from lunar orbital imagery. The NASA Ames Intelligent Robotics Group (IRG) aims to produce higher-quality terrain reconstructions of the Moon from Apollo Metric Camera (AMC) data than is currently possible. In particular, IRG makes use of a stereo vision process, the Ames Stereo Pipeline (ASP), to automatically generate DEMs from consecutive AMC image pairs. However, the DEMs currently produced by the ASP often contain errors and inconsistencies due to image noise, shadows, etc. The proposed method addresses this problem by making use of multiple observations and by considering their goodness of fit to improve both the accuracy and robustness of the estimate. The stepwise regression method is applied to estimate the relaxed weight of each observation.

Defect Detection and Segmentation Framework for Remote Field Eddy Current Sensor Data.

PubMed

Falque, Raphael; Vidal-Calleja, Teresa; Miro, Jaime Valls

2017-10-06

Remote-Field Eddy-Current (RFEC) technology is often used as a Non-Destructive Evaluation (NDE) method to prevent water pipe failures. By analyzing the RFEC data, it is possible to quantify the corrosion present in pipes. Quantifying the corrosion involves detecting defects and extracting their depth and shape. For large sections of pipelines, this can be extremely time-consuming if performed manually. Automated approaches are therefore well motivated. In this article, we propose an automated framework to locate and segment defects in individual pipe segments, starting from raw RFEC measurements taken over large pipelines. The framework relies on a novel feature to robustly detect these defects and a segmentation algorithm applied to the deconvolved RFEC signal. The framework is evaluated using both simulated and real datasets, demonstrating its ability to efficiently segment the shape of corrosion defects.

Landsat Thematic Mapper studies of land cover spatial variability related to hydrology

NASA Technical Reports Server (NTRS)

Wharton, S.; Ormsby, J.; Salomonson, V.; Mulligan, P.

1984-01-01

Past accomplishments involving remote sensing based land-cover analysis for hydrologic applications are reviewed. Ongoing research in exploiting the increased spatial, radiometric, and spectral capabilities afforded by the TM on Landsats 4 and 5 is considered. Specific studies to compare MSS and TM for urbanizing watersheds, wetlands, and floodplain mapping situations show that only a modest improvement in classification accuracy is achieved via statistical per pixel multispectral classifiers. The limitations of current approaches to multispectral classification are illustrated. The objectives, background, and progress in the development of an alternative analysis approach for defining inputs to urban hydrologic models using TM are discussed.

Earth remote sensing - 1970-1995

NASA Technical Reports Server (NTRS)

Thome, P. G.

1984-01-01

The past-achievements, current status, and future prospects of the Landsat terrestrial-remote-sensing satellite program are surveyed. Topics examined include the early history of space flight; the development of analysis techniques to interpret the multispectral images obtained by Landsats 1, 2, and 3; the characteristics of the advanced Landsat-4 Thematic Mapper; microwave scanning by Seasat and the Shuttle Imaging Radar; the usefulness of low-resolution AVHRR data from the NOAA satellites; improvements in Landsats 4 and 5 to permit tailoring of information to user needs; expansion and internationalization of the remote-sensing market in the late 1980s; and technological advances in both instrumentation and data-processing predicted by the 1990s.

The American Science Pipeline: Sustaining Innovation in a Time of Economic Crisis

PubMed Central

Hue, Gillian; Sales, Jessica; Comeau, Dawn; Lynn, David G.

2010-01-01

Significant limitations have emerged in America's science training pipeline, including inaccessibility, inflexibility, financial limitations, and lack of diversity. We present three effective programs that collectively address these challenges. The programs are grounded in rigorous science and integrate through diverse disciplines across undergraduate, graduate, and postdoctoral students, and resonate with the broader community. We discuss these models in the context of current economic constraints on higher education and the urgent need for our institutions to recruit and retain diverse student populations and sustain the successful American record in scientific education and innovation. PMID:21123689

The LCOGT Observation Portal, Data Pipeline and Science Archive

NASA Astrophysics Data System (ADS)

Lister, Tim; LCOGT Science Archive Team

2014-01-01

Las Cumbres Observatory Global Telescope (LCOGT) is building and deploying a world-wide network of optical telescopes dedicated to time-domain astronomy. During 2012-2013, we successfully deployed and commissioned nine new 1m telescopes at McDonald Observatory (Texas), CTIO (Chile), SAAO (South Africa) and Siding Spring Observatory (Australia). New, improved cameras and additional telescopes will be deployed during 2014. To enable the diverse LCOGT user community of scientific and educational users to request observations on the LCOGT Network and to see their progress and get access to their data, we have developed an Observation Portal system. This Observation Portal integrates proposal submission and observation requests with seamless access to the data products from the data pipelines in near-realtime and long-term products from the Science Archive. We describe the LCOGT Observation Portal and the data pipeline, currently in operation, which makes use of the ORAC-DR automated recipe-based data reduction pipeline and illustrate some of the new data products. We also present the LCOGT Science Archive, which is being developed in partnership with the Infrared Processing and Analysis Center (IPAC) and show some of the new features the Science Archive provides.

Measuring novices' field mapping abilities using an in-class exercise based on expert task analysis

NASA Astrophysics Data System (ADS)

Caulkins, J. L.

2010-12-01

We are interested in developing a model of expert-like behavior for improving the teaching methods of undergraduate field geology. Our aim is to assist students in mastering the process of field mapping more efficiently and effectively and to improve their ability to think creatively in the field. To examine expert-mapping behavior, a cognitive task analysis was conducted with expert geologic mappers in an attempt to define the process of geologic mapping (i.e. to understand how experts carry out geological mapping). The task analysis indicates that expert mappers have a wealth of geologic scenarios at their disposal that they compare against examples seen in the field, experiences that most undergraduate mappers will not have had. While presenting students with many geological examples in class may increase their understanding of geologic processes, novices still struggle when presented with a novel field situation. Based on the task analysis, a short (45-minute) paper-map-based exercise was designed and tested with 14 pairs of 3rd year geology students. The exercise asks students to generate probable geologic models based on a series of four (4) data sets. Each data set represents a day’s worth of data; after the first “day,” new sheets simply include current and previously collected data (e.g. “Day 2” data set includes data from “Day 1” plus the new “Day 2” data). As the geologic complexity increases, students must adapt, reject or generate new geologic models in order to fit the growing data set. Preliminary results of the exercise indicate that students who produced more probable geologic models, and produced higher ratios of probable to improbable models, tended to go on to do better on the mapping exercises at the 3rd year field school. These results suggest that those students with more cognitively available geologic models may be more able to use these models in field settings than those who are unable to draw on these models for whatever reason. Giving students practice at generating geologic models to explain data may be useful in preparing our students for field mapping exercises.

Overlay performance assessment of MAPPER's FLX-1200 (Conference Presentation)

NASA Astrophysics Data System (ADS)

Lattard, Ludovic; Servin, Isabelle; Pradelles, Jonathan; Blancquaert, Yoann; Rademaker, Guido; Pain, Laurent; de Boer, Guido; Brandt, Pieter; Dansberg, Michel; Jager, Remco J. A.; Peijster, Jerry J. M.; Slot, Erwin; Steenbrink, Stijn W. H. K.; Vergeer, Niels; Wieland, Marco

2017-04-01

Mapper Lithography has introduced its first product, the FLX-1200, which is installed at CEA-Leti in Grenoble (France). This is a mask less lithography system, based on massively parallel electron-beam writing with high-speed optical data transport for switching the electron beams. This FLX platform is initially targeted for 1 wph performance for 28 nm technology nodes, but can also be used for less demanding imaging. The electron source currently integrated is capable of scaling to 10 wph at the same resolution performance, which will be implemented by gradually upgrading the illumination optics. The system has an optical alignment system enabling mix-and-match with optical 193 nm immersion systems using standard NVSM marks. The tool at CEA-Leti is in-line with a Sokudo Duo clean track. Mapper Lithography and CEA-Leti are working in collaboration to develop turnkey solution for specific applications. At previous conferences we have presented imaging results including 28nm node resolution, cross wafer CDu of 2.5nm 3 and a throughput of half a wafer per hour, overhead times included. At this conference we will present results regarding the overlay performance of the FLX-1200. In figure 2 an initial result towards measuring the overlay performance of the FLX-1200 is shown. We have exposed a wafer twice without unloading the wafer in between exposures. In the first exposure half of a dense dot array is exposed. In the second exposure the remainder of the dense dot array is exposed. After development the wafer has been inspected using a CD-SEM at 480 locations distributed over an area of 100mm x 100mm. For each SEM image the shift of the pattern written in the first exposure relative to the pattern written in the second exposure is measured. Cross wafer this shift is 7 nm u+3s in X and 5 nm u+3s in Y. The next step is to evaluate the impact of unloading and loading of the wafer in between exposures. At the conference the latest results will be presented.

Landsat Thematic Mapper monitoring of turbid inland water quality

NASA Technical Reports Server (NTRS)

Lathrop, Richard G., Jr.

1992-01-01

This study reports on an investigation of water quality calibration algorithms under turbid inland water conditions using Landsat Thematic Mapper (TM) multispectral digital data. TM data and water quality observations (total suspended solids and Secchi disk depth) were obtained near-simultaneously and related using linear regression techniques. The relationships between reflectance and water quality for Green Bay and Lake Michigan were compared with results for Yellowstone and Jackson Lakes, Wyoming. Results show similarities in the water quality-reflectance relationships, however, the algorithms derived for Green Bay - Lake Michigan cannot be extrapolated to Yellowstone and Jackson Lake conditions.

High temperature, high intensity solar array. [for Venus Radar Mapper mission

NASA Technical Reports Server (NTRS)

Smith, B. S.; Brooks, G. R.; Pinkerton, R.

1985-01-01

The solar array for the Venus Radar Mapper mission will operate in the high temperature, high intensity conditions of a low Venus orbit environment. To fulfill the performance requirements in this environment at minimum cost and mass while maximizing power density and packing factor on the panel surface, several features were introduced into the design. These features included the use of optical surface reflectors (OSR's) to reduce the operating temperature; new adhesives for conductive bonding of OSR's to avoid electrostatic discharges; custom-designed large area cells and novel shunt diode circuit and panel power harness configurations.

Mineralogy of the Lunar Crust in Spatial Context: First Results from the Moon Mineralogy Mapper (M3)

NASA Technical Reports Server (NTRS)

Pieters, C. M.; Boardman, J.; Buratti, B.; Clark, R.; Combe, J-P; Green, R.; Goswami, J. N.; Head, J. W., III; Hicks, M.; Isaacson, P.;

Radiometric calibration of Landsat Thematic Mapper multispectral images

USGS Publications Warehouse

Chavez, P.S.

1989-01-01

A main problem encountered in radiometric calibration of satellite image data is correcting for atmospheric effects. Without this correction, an image digital number (DN) cannot be converted to a surface reflectance value. In this paper the accuracy of a calibration procedure, which includes a correction for atmospheric scattering, is tested. Two simple methods, a stand-alone and an in situ sky radiance measurement technique, were used to derive the HAZE DN values for each of the six reflectance Thematic Mapper (TM) bands. The DNs of two Landsat TM images of Phoenix, Arizona were converted to surface reflectances. -from Author

An Initial Analysis of LANDSAT-4 Thematic Mapper Data for the Discrimination of Agricultural, Forested Wetland, and Urban Land Covers

NASA Technical Reports Server (NTRS)

Quattrochi, D. A.

1984-01-01

An initial analysis of LANDSAT 4 Thematic Mapper (TM) data for the discrimination of agricultural, forested wetland, and urban land covers is conducted using a scene of data collected over Arkansas and Tennessee. A classification of agricultural lands derived from multitemporal LANDSAT Multispectral Scanner (MSS) data is compared with a classification of TM data for the same area. Results from this comparative analysis show that the multitemporal MSS classification produced an overall accuracy of 80.91% while the TM classification yields an overall classification accuracy of 97.06% correct.

Thematic mapper data analysis

NASA Technical Reports Server (NTRS)

Settle, M.; Chavez, P.; Kieffer, H. H.; Everett, J. R.; Kahle, A. B.; Kitcho, C. A.; Milton, N. M.; Mouat, D. A.

1983-01-01

The geological applications of remote sensing technology are discussed, with emphasis given to the analysis of data from the Thematic Mapper (TM) instrument onboard the Landsat 4 satellite. The flight history and design characteristics of the Landsat 4/TM are reviewed, and some difficulties endountered in the interpretation of raw TM data are discussed, including: the volume of data; residual noise; detector-to-detector striping; and spatial misregistration between measurements. Preliminary results of several geological, lithological, geobotanical mapping experiments are presented as examples of the geological applications of the TM, and some areas for improving the guality of TM imagery are identified.

Lightning mapper sensor design study

NASA Technical Reports Server (NTRS)

Eaton, L. R.; Poon, C. W.; Shelton, J. C.; Laverty, N. P.; Cook, R. D.

1983-01-01

World-wide continuous measurement of lightning location, intensity, and time during both day and night is to be provided by the Lightning Mapper (LITMAP) instrument. A technology assessment to determine if the LITMAP requirements can be met using existing sensor and electronic technologies is presented. The baseline concept discussed in this report is a compromise among a number of opposing requirements (e.g., ground resolution versus array size; large field of view versus narrow bandpass filter). The concept provides coverage for more than 80 percent of the lightning events as based on recent above-cloud NASA/U2 lightning measurements.

Titan Radar Mapper observations from Cassini's T3 fly-by

USGS Publications Warehouse

Elachi, C.; Wall, S.; Janssen, M.; Stofan, E.; Lopes, R.; Kirk, R.; Lorenz, R.; Lunine, J.; Paganelli, F.; Soderblom, L.; Wood, C.; Wye, L.; Zebker, H.; Anderson, Y.; Ostro, S.; Allison, M.; Boehmer, R.; Callahan, P.; Encrenaz, P.; Flamini, E.; Francescetti, G.; Gim, Y.; Hamilton, G.; Hensley, S.; Johnson, W.; Kelleher, K.; Muhleman, D.; Picardi, G.; Posa, F.; Roth, L.; Seu, R.; Shaffer, S.; Stiles, B.; Vetrella, S.; West, R.

2006-01-01

Cassini's Titan Radar Mapper imaged the surface of Saturn's moon Titan on its February 2005 fly-by (denoted T3), collecting high-resolution synthetic-aperture radar and larger-scale radiometry and scatterometry data. These data provide the first definitive identification of impact craters on the surface of Titan, networks of fluvial channels and surficial dark streaks that may be longitudinal dunes. Here we describe this great diversity of landforms. We conclude that much of the surface thus far imaged by radar of the haze-shrouded Titan is very young, with persistent geologic activity. ?? 2006 Nature Publishing Group.

Candidate configuration trade study, Stellar-inertial Measurement Systems (SIMS) for an Earth Observation Satellite (EOS)

NASA Technical Reports Server (NTRS)

Ogletree, G.; Coccoli, J.; Mckern, R.; Smith, M.; White, R.

1972-01-01

The results of analytical and simulation studies of the stellar-inertial measurement system (SIMS) for an earth observation satellite are presented. Subsystem design analyses and sensor design trades are reported. Three candidate systems are considered: (1) structure-mounted gyros with structure-mounted star mapper, (2) structure-mounted gyros with gimbaled star tracker, and (3) gimbaled gyros with structure-mounted star mapper. The purpose of the study is to facilitate the decisions pertaining to gimbaled versus structure-mounted gyros and star sensors, and combinations of systems suitable for the EOS satellite.

Evaluation of spatial, radiometric and spectral Thematic Mapper performance for coastal studies

NASA Technical Reports Server (NTRS)

Klemas, V. (Principal Investigator)

1984-01-01

The effect different wetland plant canopies have upon observed reflectance in Thematic Mapper bands is studied. The three major vegetation canopy types (broadleaf, gramineous and leafless) produce unique spectral responses for a similar quantity of live biomass. The spectral biomass estimate of a broadleaf canopy is most similar to the harvest biomass estimate when a broadleaf canopy radiance model is used. All major wetland vegetation species can be identified through TM imagery. Simple regression models are developed equating the vegetation index and the infrared index with biomass. The spectral radiance index largely agreed with harvest biomass estimates.

Utilizing remote sensing of thematic mapper data to improve our understanding of estuarine processes and their influence on the productivity of estuarine-dependent fisheries

NASA Technical Reports Server (NTRS)

Browder, Joan A.; May, L. Nelson, Jr.; Rosenthal, Alan; Baumann, Robert H.; Gosselink, James G.

1987-01-01

A stochastic spatial computer model addressing coastal resource problems in Lousiana is being refined and validated using thematic mapper (TM) imagery. The TM images of brackish marsh sites were processed and data were tabulated on spatial parameters from TM images of the salt marsh sites. The Fisheries Image Processing Systems (FIPS) was used to analyze the TM scene. Activities were concentrated on improving the structure of the model and developing a structure and methodology for calibrating the model with spatial-pattern data from the TM imagery.

The utility of Landsat-D for water-resources studies

NASA Technical Reports Server (NTRS)

Salomonson, V. V.

1980-01-01

The paper discusses applications of the Landsat-D remote sensing observations to hydrology and management of water resources. It is expected that the Landsat-D thematic mapper will provide spatial resolution of 30 m vs 79 m in the reflected solar radiation bands; additional spectral resolution in the 0.5 to 1.0 micron region and new bands covering regions in the 0.45 to 2.35 micron range will be available. The thematic mapper produces data at an 85 megabit/sec rate; an advanced data processing system will be used for improved monitoring of earth resources.

Geologic results of the TMS survey over Mt. Emmons, Colorado. [Thematic Mapper Simulator

NASA Technical Reports Server (NTRS)

Rickman, D. L.; Sadowski, R. M.

1985-01-01

In 1981, NASA conducted with an American company a cooperative study, involving the use of Thematic Mapper Simulator (TMS) data. The study was concerned with an area near Crested Butte, Colorado, which contains a known, but unmined, major molybdenum deposit. Detailed ground observations in the Mt. Emmons area demonstrated that the imagery was extremely effective for detection of geologically significant features. The imagery specifically delineated areas of ferric iron staining, seritization, and hornfelized rock. Attention is given to data acquisition and data processing, field work in 1982 and in 1983, the integration of gravity data, and costs.

Cropland measurement using Thematic Mapper data and radiometric model

NASA Technical Reports Server (NTRS)

Lyon, John G.; Khuwaiter, I. H. S.

1989-01-01

To halt erosion and desertification, it is necessary to quantify resources that are affected. Necessary information includes inventory of croplands and desert areas as they change over time. Several studies indicate the value of remote sensor data as input to inventories. In this study, the radiometric modeling of spectral characteristics of soil and vegetation provides the theoretical basis for the remote sensing approach. Use of Landsat Thematic Mapper images allows measurement of croplands in Saudi Arabia, demonstrating the capability of the approach. The inventory techniques and remote sensing approach presented are potentially useful in developing countries.

Influence of the Yukon River on the Bering Sea

NASA Technical Reports Server (NTRS)

Dean, K.; Mcroy, C. P.

1986-01-01

The relationships between the discharge of the Yukon River to the currents and biological productivity in the northern Bering Sea were studied. Specific objectives were: to develop thermal, sediment, and chlorophyll surface maps using Thematic Mapper (TM) data of the discharge of the Yukon River and the Alaskan Coastal Current during the ice free season; to develop a historical model of the distribution of the Yukon River discharge and the Alaskan Coastal Current using LANDSAT Multispectral band scanner (MSS) and NOAA satellite imagery; and to use high resolution TM data to define the surface dynamics of the front between the Alaskan Coastal Current and the Bering Shelf/Anadyr Current. LANDSAT MSS, TM, and Advanced Very High Resolution Radiometer (AVHRR) data were recorded during the 1985 ice free period. The data coincided with shipboard measurements acquired by Inner Shelf Transfer and Recycling (ISTAR) project scientists. An integrated model of the distribution of turbid water discharged from the Yukon River was compiled. A similar model is also being compiled for the Alaskan Coastal and Bering Shelf/Anadyr water masses based on their thermal expressions seen on AVHRR imagery.

Fault location method for unexposed gas trunk line insulation at stray current constant effect area

NASA Astrophysics Data System (ADS)

Tsenev, A. N.; Nosov, V. V.; Akimova, E. V.

2017-10-01

For the purpose of gas trunk lines safe operation, two types of pipe wall metal anticorrosion protection are generally used - the passive (insulation coating) protection and the active (electrochemical) protection. In the process of a pipeline long-term operation, its insulation is subject to wear and damage. Electrochemical protection means of a certain potential value prevent metal dissolution in the soil. When insulation wear and tear attains a level of insufficiency of the protection potential value, the insulating coating needs repair which is a labor-consuming procedure. To reduce the risk of such situation, it is necessary to make inspection rounds to monitor the condition of pipe insulation. A method for pipeline insulation coating unexposed fault location based on Pearson method is considered, wherein a working cathodic protection station signal of 100 Hz frequency is used, which makes installation of a generator unnecessary, and also a specific generator signal of 1 kHz frequency is used at high noise immunity and sensitivity of the instrument complex. This method enables detection and sizing of unexposed pipeline defects within the zones of earth current permanent action. High noise immunity of selective indicators allows for operation in proximity to 110 kV, 220 kV, and 500 kV power transmission lines in action.

Educational pipelines of nurses in Texas: promoting academic mobility through partnerships.

PubMed

Darnall, Emily D; Kishi, Aileen; Wiebusch, Pamela

2011-01-01

Texas, like many states across the nation, is struggling to position itself to achieve the Institute of Medicine (IOM) recommendations on the future of nursing. This article provides insights into the hurdles faced by Texas in achieving some of the IOM goals, particularly those related to a better educated nursing workforce. Only 9% of actively licensed nurses have pursued higher degrees, putting Texas below the national average. Currently, there is a gap between actual academic mobility and national recommendations to increase the numbers of baccalaureate- and doctorate-prepared nurses by 2020. The purpose of this study was to evaluate the educational pipeline in the state of Texas while suggesting partnerships as a solution to promote academic mobility. This cross-sectional study evaluated the academic mobility of four selected cohorts of nurses who have been in practice for 5 to 20 years. The findings revealed limited academic mobility compared with national benchmarks among all cohorts, regardless of basic degree and length in the profession. Educational pipelines for nurses need to be more dynamic in Texas than current trends reflect. Collaboration and partnerships between academics, clinicians, administrators, employers, and policy makers should be developed to address barriers that are deterring nurses from continuing their education. Copyright © 2011 Elsevier Inc. All rights reserved.

MR-Tandem: parallel X!Tandem using Hadoop MapReduce on Amazon Web Services

PubMed Central

Pratt, Brian; Howbert, J. Jeffry; Tasman, Natalie I.; Nilsson, Erik J.

2012-01-01

Summary: MR-Tandem adapts the popular X!Tandem peptide search engine to work with Hadoop MapReduce for reliable parallel execution of large searches. MR-Tandem runs on any Hadoop cluster but offers special support for Amazon Web Services for creating inexpensive on-demand Hadoop clusters, enabling search volumes that might not otherwise be feasible with the compute resources a researcher has at hand. MR-Tandem is designed to drop in wherever X!Tandem is already in use and requires no modification to existing X!Tandem parameter files, and only minimal modification to X!Tandem-based workflows. Availability and implementation: MR-Tandem is implemented as a lightly modified X!Tandem C++ executable and a Python script that drives Hadoop clusters including Amazon Web Services (AWS) Elastic Map Reduce (EMR), using the modified X!Tandem program as a Hadoop Streaming mapper and reducer. The modified X!Tandem C++ source code is Artistic licensed, supports pluggable scoring, and is available as part of the Sashimi project at http://sashimi.svn.sourceforge.net/viewvc/sashimi/trunk/trans_proteomic_pipeline/extern/xtandem/. The MR-Tandem Python script is Apache licensed and available as part of the Insilicos Cloud Army project at http://ica.svn.sourceforge.net/viewvc/ica/trunk/mr-tandem/. Full documentation and a windows installer that configures MR-Tandem, Python and all necessary packages are available at this same URL. Contact: brian.pratt@insilicos.com PMID:22072385

Three-dimensional nonlinear responses to impact loads on free-span pipeline: Torsional coupling and load steps

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chung, J.S.; Huttelmaier, H.P.; Cheng, B.R.

1995-12-31

For a heavy object falling on a free-span pipeline, this study assesses three-dimensional (3-D) pipe-span responses with the torsional ({theta}x-) coupling of a pipeline through the biaxial (y) bending responses. The static pipe-span equilibrium is achieved with its self-weight and buoyancy and the external torsional moment induced by the cross-flow (y-directional) current on the sagged pipe span. Load steps taken for 2 different sequences of applying static loads induced different pipe deformations, and the pipe twists in entirely different pattern. The two types of impact loads are applied in the vertical (z-) direction to excite the pipe span in itsmore » static equilibrium: (1) triangular impulse loading and (2) ramp loading. Boundary condition of the span supports is ``fixed-fixed`` at both ends in both displacement and rotation. 3-D coupled axial (x-), bending (y- and z-) and torsional ({theta}x-) responses, both state and dynamic, to the z-directional impact loadings, are modeled and analyzed by a nonlinear FEM method for a 16-in pipeline. The 3-D responses are compared with 2-D responses. The comparison shows significant torsional vibrations caused by the cross-flow current, especially for longer spans. The torsional ({theta}x-) coupling is very sensitive to the time-step size in achieving numerical stability and accuracy, particularly for the ramp loading and for a shorter span. For very large impact loads, the response frequencies differ from the fundamental frequencies of the span, exhibiting beatings and strong bending-to-axial and to-twist couplings. Also, the eigenvalues for the linear system are not necessarily the resonance frequencies for these nonlinear coupled responses.« less

Next Generation Sequence Analysis and Computational Genomics Using Graphical Pipeline Workflows

PubMed Central

Torri, Federica; Dinov, Ivo D.; Zamanyan, Alen; Hobel, Sam; Genco, Alex; Petrosyan, Petros; Clark, Andrew P.; Liu, Zhizhong; Eggert, Paul; Pierce, Jonathan; Knowles, James A.; Ames, Joseph; Kesselman, Carl; Toga, Arthur W.; Potkin, Steven G.; Vawter, Marquis P.; Macciardi, Fabio

2012-01-01

Whole-genome and exome sequencing have already proven to be essential and powerful methods to identify genes responsible for simple Mendelian inherited disorders. These methods can be applied to complex disorders as well, and have been adopted as one of the current mainstream approaches in population genetics. These achievements have been made possible by next generation sequencing (NGS) technologies, which require substantial bioinformatics resources to analyze the dense and complex sequence data. The huge analytical burden of data from genome sequencing might be seen as a bottleneck slowing the publication of NGS papers at this time, especially in psychiatric genetics. We review the existing methods for processing NGS data, to place into context the rationale for the design of a computational resource. We describe our method, the Graphical Pipeline for Computational Genomics (GPCG), to perform the computational steps required to analyze NGS data. The GPCG implements flexible workflows for basic sequence alignment, sequence data quality control, single nucleotide polymorphism analysis, copy number variant identification, annotation, and visualization of results. These workflows cover all the analytical steps required for NGS data, from processing the raw reads to variant calling and annotation. The current version of the pipeline is freely available at http://pipeline.loni.ucla.edu. These applications of NGS analysis may gain clinical utility in the near future (e.g., identifying miRNA signatures in diseases) when the bioinformatics approach is made feasible. Taken together, the annotation tools and strategies that have been developed to retrieve information and test hypotheses about the functional role of variants present in the human genome will help to pinpoint the genetic risk factors for psychiatric disorders. PMID:23139896

High-Resolution Spectroscopic Study of Extremely Metal-Poor Star Candidates from the SkyMapper Survey

NASA Astrophysics Data System (ADS)

Jacobson, Heather R.; Keller, Stefan; Frebel, Anna; Casey, Andrew R.; Asplund, Martin; Bessell, Michael S.; Da Costa, Gary S.; Lind, Karin; Marino, Anna F.; Norris, John E.; Peña, José M.; Schmidt, Brian P.; Tisserand, Patrick; Walsh, Jennifer M.; Yong, David; Yu, Qinsi

2015-07-01

The SkyMapper Southern Sky Survey is carrying out a search for the most metal-poor stars in the Galaxy. It identifies candidates by way of its unique filter set which allows for estimation of stellar atmospheric parameters. The set includes a narrow filter centered on the Ca ii K 3933 Å line, enabling a robust estimate of stellar metallicity. Promising candidates are then confirmed with spectroscopy. We present the analysis of Magellan Inamori Kyocera Echelle high-resolution spectroscopy of 122 metal-poor stars found by SkyMapper in the first two years of commissioning observations. Forty-one stars have [{Fe}/{{H}}]≤slant -3.0. Nine have [{Fe}/{{H}}]≤slant -3.5, with three at [{Fe}/{{H}}]∼ -4. A 1D LTE abundance analysis of the elements Li, C, Na, Mg, Al, Si, Ca, Sc, Ti, Cr, Mn, Co, Ni, Zn, Sr, Ba, and Eu shows these stars have [X/Fe] ratios typical of other halo stars. One star with low [X/Fe] values appears to be “Fe-enhanced,” while another star has an extremely large [Sr/Ba] ratio: \\gt 2. Only one other star is known to have a comparable value. Seven stars are “CEMP-no” stars ([{{C}}/{Fe}]\\gt 0.7, [{Ba}/{Fe}]\\lt 0). 21 stars exhibit mild r-process element enhancements (0.3≤slant [{Eu}/{Fe}]\\lt 1.0), while four stars have [{Eu}/{Fe}]≥slant 1.0. These results demonstrate the ability to identify extremely metal-poor stars from SkyMapper photometry, pointing to increased sample sizes and a better characterization of the metal-poor tail of the halo metallicity distribution function in the future. This paper includes data gathered with the 6.5 m Magellan Telescopes located at Las Campanas Observatory, Chile.

A large-format imager for the SkyMapper Survey Telescope

NASA Astrophysics Data System (ADS)

Granlund, A.; Conroy, P. G.; Keller, S. C.; Oates, A. P.; Schmidt, B.; Waterson, M. F.; Kowald, E.; Dawson, M. I.

2006-06-01

The Research School of Astronomy and Astrophysics (RSAA) of the Australian National University (ANU) at Mt Stromlo Observatory is developing a wide-field Cassegrain Imager for the new 1.3m SkyMapper Survey Telescope under construction for Siding Spring Observatory, NSW, Australia. The Imager features a fast-readout, low-noise 268 Million pixel CCD mosaic that provides a 5.7 square degree field of view. Given the close relative sizes of the telescope and Imager, the work is proceeding in close collaboration with the telescope's manufacturer, Electro Optics Systems Pty Ltd (Canberra, Australia). The design of the SkyMapper Imager focal plane is based on E2V (Chelmsford, UK) deep depletion CCDs. These devices have 2048 x 4096 15 micron pixels, and provide a 91% filling factor in our mosaic configuration of 4 x 8 chips. In addition, the devices have excellent quantum efficiency from 300nm-950nm, near perfect cosmetics, and low-read noise, making them well suited to the all-sky ultraviolet through near-IR Southern Sky Survey to be conducted by the telescope. The array will be controlled using modified versions of the new IOTA controllers being developed for Pan-STARRS by Onaka and Tonry et al. These controllers provide a cost effective, low-volume, high speed solution for our detector read-out requirements. The system will have an integrated 6-filter exchanger, and Shack-Hartmann optics, and will be cooled by closed-cycle helium coolers. This paper will present the specifications, and opto-mechanical and detector control design of the SkyMapper Imager, including the test results of the detector characterisation and manufacturing progress.

77 FR 70543 - Pipeline Safety: Meeting of the Gas Pipeline Advisory Committee and the Liquid Pipeline Advisory...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-11-26

.... PHMSA-2009-0203] Pipeline Safety: Meeting of the Gas Pipeline Advisory Committee and the Liquid Pipeline..., and safety policies for natural gas pipelines and for hazardous liquid pipelines. Both committees were...: Notice of advisory committee meeting. SUMMARY: This notice announces a public meeting of the Gas Pipeline...

Space Weather Impact on Pipeline in La Plata City, Argentine

NASA Astrophysics Data System (ADS)

Gianibelli, J. C.; Dovico, R. O.; Peirtti, R. O.; Pretel, R. O.; Garcia, R. E.; Quaglino, N. M.

2007-05-01

In the Sun-Earth connection, some of the most important characteristic events involved are the Coronal Mass Ejections (CME) and the high speed particle streams events coming from the Coronal Holes at the Sun. These interplanetary events produce effects on space and ground-based technology. In the present work, the geomagnetic storm recorded at Las Acacias Digital Magnetic Observatory (LAS, Lat.:-35º.0; Long.: 302º.3) produced by a particle stream from a solar coronal hole and their relationship with the induction effects caused on a pipeline in the shore of La Plata city, Argentine. The result shows an increase of the induced current correlated with the registered geomagnetic storm. Also, the magnetically calm days are analized. It is concluded that the amplitude of induced current intensity verifies a logarithmic relation with the amplitude of total magnetic intensity recorded in Las Acacias Observatory.

78 FR 70623 - Pipeline Safety: Meeting of the Gas Pipeline Advisory Committee and the Liquid Pipeline Advisory...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-11-26

... DEPARTMENT OF TRANSPORTATION Pipeline and Hazardous Materials Safety Administration [Docket No. PHMSA-2009-0203] Pipeline Safety: Meeting of the Gas Pipeline Advisory Committee and the Liquid Pipeline Advisory Committee AGENCY: Pipeline and Hazardous Materials Safety Administration (PHMSA), DOT. [[Page...

Demonstration of angular anisotropy in the output of Thematic Mapper

NASA Technical Reports Server (NTRS)

Duggin, M. J. (Principal Investigator); Lindsay, J.; Piwinski, D. J.; Schoch, L. B.

1984-01-01

There is a dependence of TM output (proportional to scene radiance in a manner which will be discussed) upon season, upon cover type and upon view angle. The existence of a significant systematic variation across uniform scenes in p-type (radiometrically and geometrically pre-processed) data is demonstrated. Present pre-processing does remove the effects and the problem must be addressed because the effects are large. While this is in no way attributable to any shortcomings in the thematic mapper, it is an effect which is sufficiently important to warrant more study, with a view to developing suitable pre-processing correction algorithms.

Statistical analysis of Thematic Mapper Simulator data for the geobotanical discrimination of rock types in southwest Oregon

NASA Technical Reports Server (NTRS)

Morrissey, L. A.; Weinstock, K. J.; Mouat, D. A.; Card, D. H.

1984-01-01

An evaluation of Thematic Mapper Simulator (TMS) data for the geobotanical discrimination of rock types based on vegetative cover characteristics is addressed in this research. A methodology for accomplishing this evaluation utilizing univariate and multivariate techniques is presented. TMS data acquired with a Daedalus DEI-1260 multispectral scanner were integrated with vegetation and geologic information for subsequent statistical analyses, which included a chi-square test, an analysis of variance, stepwise discriminant analysis, and Duncan's multiple range test. Results indicate that ultramafic rock types are spectrally separable from nonultramafics based on vegetative cover through the use of statistical analyses.

Mapping the Oman Ophiolite using TM data

NASA Technical Reports Server (NTRS)

Abrams, Michael

1987-01-01

Ophiolite terrains, considered to be the onland occurrences of oceanic crust, host a number of types of mineral deposits: volcanogenic massive sulfides, podiform chromite, and asbestos. Thematic Mapper data for the Semail Ophiolite in Oman were used to separate and map ultramafic lithologies hosting these deposits, including identification of the components of the extrusive volcanic sequence, mapping of serpentinization due to various tectonic processes, and direct identification of gossans. Thematic Mapper data were found to be extremely effective for mapping in this terrain due to the excellent spatial resolution and the presence of spectral bands which allow separation of the pertinent mineralogically caused spectral features associated with the rock types of interest.

Using the Landsat 7 enhanced thematic mapper tasseled cap transformation to extract shoreline

USGS Publications Warehouse

Scott, J.W.

2003-01-01

A semiautomated method for objectively interpreting and extracting the land-water interface has been devised and used successfully to generate multiple shoreline data for the test States of Louisiana and Delaware. The method is based on the application of tasseled cap transformation coefficients derived by the EROS Data Center for Landsat 7 Enhanced Thematic Mapper Data, and is used in conjunction with ERDAS Imagine software. Shoreline data obtained using this method are cost effective compared with conventional mapping methods for State, regional, and national coastline applications. Attempts to attribute vector shoreline data with orthometric elevation values derived from tide observation stations, however, proved unsuccessful.

EVALUATION OF LOW-SUN ILLUMINATED LANDSAT-4 THEMATIC MAPPER DATA FOR MAPPING HYDROTHERMALLY ALTERED ROCKS IN SOUTHERN NEVADA.

USGS Publications Warehouse

Podwysocki, Melvin H.; Power, Marty S.; Salisbury, Jack; Jones, O.D.

1984-01-01

Landsat-4 Thematic Mapper (TM) data of southern Nevada collected under conditions of low-angle solar illumination were digitally processed to identify hydroxyl-bearing minerals commonly associated with hydrothermal alteration in volcanic terrains. Digital masking procedures were used to exclude shadow areas and vegetation and thus to produce a CRC image suitable for testing the new TM bands as a means to map hydrothermally altered rocks. Field examination of a masked CRC image revealed that several different types of altered rocks displayed hues associated with spectral characteristics common to hydroxyl-bearing minerals. Several types of unaltered rocks also displayed similar hues.

Salinity Processes in the Upper Ocean Regional Study (SPURS)

NASA Image and Video Library

2012-09-04

Woods Hole Oceanographic Institution Scientist Dave Fratantoni works on the EcoMapper AUVs (autonomous underwater vehicles) onboard the Institute's research vessel Knorr, Tuesday, Sept. 4, 2012, in Woods Hole, Mass. The EcoMappers will be deployed in the Atlantic Ocean as part of the Salinity Processes in the Upper Ocean Regional Study (SPURS) which is set to sail on Sept. 6. The NASA-sponsored expedition will sail to the North Atlantic's saltiest spot to get a detailed, 3-D picture of how salt content fluctuates in the ocean's upper layers and how these variations are related to shifts in rainfall patterns around the planet. Photo Credit: (NASA/Bill Ingalls)

Salinity Processes in the Upper Ocean Regional Study (SPURS)

NASA Image and Video Library

2012-09-04

Two EcoMapper AUVs (autonomous underwater vehicles) are seen onboard the the Woods Hole Oceanographic Institution research vessel Knorr on Tuesday, Sept. 4, 2012, in Woods Hole, Mass. The EcoMappers will be deployed in the Atlantic Ocean as part of the Salinity Processes in the Upper Ocean Regional Study (SPURS) which is set to sail on Sept. 6. The NASA-sponsored expedition will sail to the North Atlantic's saltiest spot to get a detailed, 3-D picture of how salt content fluctuates in the ocean's upper layers and how these variations are related to shifts in rainfall patterns around the planet. Photo Credit: (NASA/Bill Ingalls)

Evaluation of spatial, radiometric and spectral Thematic Mapper performance for coastal studies

NASA Technical Reports Server (NTRS)

Klemas, V. (Principal Investigator)

1984-01-01

The effect different wetland plant canopies have upon observed reflectance in Thematic Mapper bands is examined. The three major vegetation canopy types (broadleaf, gramineous and leafless) produce unique spectral responses for a similar quantity of live biomass. Biomass estimates computed from spectral data were most similar to biomass estimates determined from harvest data when models developed for a specific canopy were used. Precise determination of regression coefficients for each canopy type and modeling changes in the coefficients with various combinations of canopy types are being tested. The multispectral band scanner vegetation index estimates are very similar to the vegetation index estimates.

LANDSAT-D data format control book. Volume 6, appendix A: Partially processed thematic mapper High Density Tape (HDT-AT)

NASA Technical Reports Server (NTRS)

Jai, A.

1982-01-01

One of the outputs of the data management system being developed to provide a variety of standard image products from the thematic mapper and the multispectral band scanners on LANDSAT 4, is the partially processed TM data (radiometric corrections applied and geometric correction matrices for two projections appended) which is recorded on a 28-track high density tape. Specifications are presented for the format of the recorded data as well as for the time code and the major and minor frames of the tape. Major frame types, formats, and field definitions are included.

An Approach for Stitching Satellite Images in a Bigdata Mapreduce Framework

NASA Astrophysics Data System (ADS)

Sarı, H.; Eken, S.; Sayar, A.

2017-11-01

In this study we present a two-step map/reduce framework to stitch satellite mosaic images. The proposed system enable recognition and extraction of objects whose parts falling in separate satellite mosaic images. However this is a time and resource consuming process. The major aim of the study is improving the performance of the image stitching processes by utilizing big data framework. To realize this, we first convert the images into bitmaps (first mapper) and then String formats in the forms of 255s and 0s (second mapper), and finally, find the best possible matching position of the images by a reduce function.

Thematic mapper studies of Andean volcanoes

NASA Technical Reports Server (NTRS)

Francis, P. W.

1986-01-01

The primary objective was to identify all the active volcanoes in the Andean region of Bolivia. Morphological features of the Tata Sabaya volcano, Bolivia, were studied with the thematic mapper. Details include marginal levees on lava and pyroclastic flows, and summit crater structure. Valley glacier moraine deposits, not easily identified on the multispectral band scanner, were also unambiguous, and provide useful marker horizons on large volcanic edifices which were built up in preglacial times but which were active subsequently. With such high resolution imagery, it is not only possible to identify potentially active volcanoes, but also to use standard photogeological interpretation to outline the history of individual volcanoes.

Evaluation of microRNA alignment techniques

PubMed Central

Kaspi, Antony; El-Osta, Assam

2016-01-01

Genomic alignment of small RNA (smRNA) sequences such as microRNAs poses considerable challenges due to their short length (∼21 nucleotides [nt]) as well as the large size and complexity of plant and animal genomes. While several tools have been developed for high-throughput mapping of longer mRNA-seq reads (>30 nt), there are few that are specifically designed for mapping of smRNA reads including microRNAs. The accuracy of these mappers has not been systematically determined in the case of smRNA-seq. In addition, it is unknown whether these aligners accurately map smRNA reads containing sequence errors and polymorphisms. By using simulated read sets, we determine the alignment sensitivity and accuracy of 16 short-read mappers and quantify their robustness to mismatches, indels, and nontemplated nucleotide additions. These were explored in the context of a plant genome (Oryza sativa, ∼500 Mbp) and a mammalian genome (Homo sapiens, ∼3.1 Gbp). Analysis of simulated and real smRNA-seq data demonstrates that mapper selection impacts differential expression results and interpretation. These results will inform on best practice for smRNA mapping and enable more accurate smRNA detection and quantification of expression and RNA editing. PMID:27284164

Thematic mapper research in the Earth sciences: Tectonic evaluation of the Nubian Shield of northeastern Sudan/southeastern Egypt using thematic mapper imagery

NASA Technical Reports Server (NTRS)

1986-01-01

The tectonic evaluation of the Nubian Shield using the Thematic Mapper (TM) imagery is progressing well and shows great promise. The TM tapes for the six LANDSAT 5 scenes covering the northern portion of the Red Sea hills were received, and preliminary maps and interpretations were made for most of the area. It is apparent that faulting and shearing associated with the major suture zones such as the Sol Hamed are clearly visible and that considerable detail can be seen. An entire quadrant of scene 173,45 was examined in detail using all seven bands, and every band combination was evaluated to best display the geology. A comparison was done with color ratio combinations and color combinations of the eigen vector bands to verify if band combinations of 7-red, 4-green, and 2-blue were indeed superior. There is no single optimum enhancement which provides the greatest detail for every image and no single combination of spectral bands for all cases, although bands 7, 4, and 2 do provide the best overall display. The color combination of the eigen vector bands proved useful in distinguishing fine detailed features.

The Mole Mapper Study, mobile phone skin imaging and melanoma risk data collected using ResearchKit.

PubMed

Webster, Dan E; Suver, Christine; Doerr, Megan; Mounts, Erin; Domenico, Lisa; Petrie, Tracy; Leachman, Sancy A; Trister, Andrew D; Bot, Brian M

2017-02-14

Sensor-embedded phones are an emerging facilitator for participant-driven research studies. Skin cancer research is particularly amenable to this approach, as phone cameras enable self-examination and documentation of mole abnormalities that may signal a progression towards melanoma. Aggregation and open sharing of this participant-collected data can be foundational for research and the development of early cancer detection tools. Here we describe data from Mole Mapper, an iPhone-based observational study built using the Apple ResearchKit framework. The Mole Mapper app was designed to collect participant-provided images and measurements of moles, together with demographic and behavioral information relating to melanoma risk. The study cohort includes 2,069 participants who contributed 1,920 demographic surveys, 3,274 mole measurements, and 2,422 curated mole images. Survey data recapitulates associations between melanoma and known demographic risks, with red hair as the most significant factor in this cohort. Participant-provided mole measurements indicate an average mole size of 3.95 mm. These data have been made available to engage researchers in a collaborative, multidisciplinary effort to better understand and prevent melanoma.

The Mole Mapper Study, mobile phone skin imaging and melanoma risk data collected using ResearchKit

PubMed Central

Webster, Dan E.; Suver, Christine; Doerr, Megan; Mounts, Erin; Domenico, Lisa; Petrie, Tracy; Leachman, Sancy A.; Trister, Andrew D.; Bot, Brian M.

2017-01-01

Sensor-embedded phones are an emerging facilitator for participant-driven research studies. Skin cancer research is particularly amenable to this approach, as phone cameras enable self-examination and documentation of mole abnormalities that may signal a progression towards melanoma. Aggregation and open sharing of this participant-collected data can be foundational for research and the development of early cancer detection tools. Here we describe data from Mole Mapper, an iPhone-based observational study built using the Apple ResearchKit framework. The Mole Mapper app was designed to collect participant-provided images and measurements of moles, together with demographic and behavioral information relating to melanoma risk. The study cohort includes 2,069 participants who contributed 1,920 demographic surveys, 3,274 mole measurements, and 2,422 curated mole images. Survey data recapitulates associations between melanoma and known demographic risks, with red hair as the most significant factor in this cohort. Participant-provided mole measurements indicate an average mole size of 3.95 mm. These data have been made available to engage researchers in a collaborative, multidisciplinary effort to better understand and prevent melanoma. PMID:28195576

OMPS TC EDR Algorithm: Improvement and Verification

NASA Astrophysics Data System (ADS)

Novicki, M.; Sen, B.; Hao, X.; Qu, J. J.

2009-12-01

The Ozone Mapper and Profiler Suite (OMPS) is scheduled to be launched on the NPOESS Preparatory Project (NPP) platform in early 2011. The OMPS will continue monitoring ozone from space, using three instruments, namely the Total Column Mapper (heritage: TOMS), the Nadir Profiler (heritage: SBUV) and the Limb Profiler (heritage: SOLSE/LORE). The Total Column Mapper (TC) sensor images the Earth through a slit, nadir-cell horizontally spaced at 49.5 km cross-track with an along-track reporting interval of 50 km. The total field of view (FOV) cross track is 110 degrees to provide daily global coverage. The TC sensor, a grating spectrometer, provides 0.45 nm spectral sampling across the wavelength range of 300-380 nm. The calibration stability, which is essential to enable long-term ozone monitoring, is maintained by periodic observations of the Sun, using a diffuser to redirect the solar irradiance into the sensor. We describe the data analysis method being presently implemented to retrieve the total column ozone Earth Data Record (EDR) from the radiance data measured by the TC sensor. We discuss the software changes, the test data used to verify the functional performance and the test results.

OMPS SDR Calibration and Validation

NASA Astrophysics Data System (ADS)

Sen, B.; Done, J.; Buss, R.; Jaross, G. R.; Kelly, T. J.

2009-12-01

The Ozone Mapper and Profiler Suite (OMPS) is scheduled to be launched on the NPOESS Preparatory Project (NPP) platform in early 2011. The OMPS will continue monitoring ozone from space, using three instruments, namely the Total Column Mapper (heritage: TOMS), the Nadir Profiler (heritage: SBUV) and the Limb Profiler (heritage: SOLSE/LORE). The Total Column Mapper (TC) sensor images the Earth through a slit, nadir-cell horizontally spaced at 49.5 km cross-track with an along-track reporting interval of 50 km. The total field of view (FOV) cross-track is 110 degree to provide daily global coverage. The TC sensor, a grating spectrometer, provides 0.45 nm spectral sampling across the wavelength range of 300-380 nm. The calibration stability, which is essential to enable long-term ozone monitoring, is maintained by periodic observations of the Sun, using a diffuser to redirect the solar irradiance into the sensor. We describe the plans to calibrate the TC sensor and validate the radiance data (TC Sensor Data Record or TC SDR) after launch. We discuss the measurements planned during the Intensive Cal/Val (ICV) phase of NPP mission, the data analysis methodology and results from the analysis of OMPS calibration measurements.

GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies.

PubMed

Kim, Jeremie S; Senol Cali, Damla; Xin, Hongyi; Lee, Donghyuk; Ghose, Saugata; Alser, Mohammed; Hassan, Hasan; Ergin, Oguz; Alkan, Can; Mutlu, Onur

2018-05-09

Seed location filtering is critical in DNA read mapping, a process where billions of DNA fragments (reads) sampled from a donor are mapped onto a reference genome to identify genomic variants of the donor. State-of-the-art read mappers 1) quickly generate possible mapping locations for seeds (i.e., smaller segments) within each read, 2) extract reference sequences at each of the mapping locations, and 3) check similarity between each read and its associated reference sequences with a computationally-expensive algorithm (i.e., sequence alignment) to determine the origin of the read. A seed location filter comes into play before alignment, discarding seed locations that alignment would deem a poor match. The ideal seed location filter would discard all poor match locations prior to alignment such that there is no wasted computation on unnecessary alignments. We propose a novel seed location filtering algorithm, GRIM-Filter, optimized to exploit 3D-stacked memory systems that integrate computation within a logic layer stacked under memory layers, to perform processing-in-memory (PIM). GRIM-Filter quickly filters seed locations by 1) introducing a new representation of coarse-grained segments of the reference genome, and 2) using massively-parallel in-memory operations to identify read presence within each coarse-grained segment. Our evaluations show that for a sequence alignment error tolerance of 0.05, GRIM-Filter 1) reduces the false negative rate of filtering by 5.59x-6.41x, and 2) provides an end-to-end read mapper speedup of 1.81x-3.65x, compared to a state-of-the-art read mapper employing the best previous seed location filtering algorithm. GRIM-Filter exploits 3D-stacked memory, which enables the efficient use of processing-in-memory, to overcome the memory bandwidth bottleneck in seed location filtering. We show that GRIM-Filter significantly improves the performance of a state-of-the-art read mapper. GRIM-Filter is a universal seed location filter that can be applied to any read mapper. We hope that our results provide inspiration for new works to design other bioinformatics algorithms that take advantage of emerging technologies and new processing paradigms, such as processing-in-memory using 3D-stacked memory devices.

Novice to Expert Cognition During Geologic Bedrock Mapping

NASA Astrophysics Data System (ADS)

Petcovic, H. L.; Libarkin, J.; Hambrick, D. Z.; Baker, K. M.; Elkins, J. T.; Callahan, C. N.; Turner, S.; Rench, T. A.; LaDue, N.

2011-12-01

Bedrock geologic mapping is a complex and cognitively demanding task. Successful mapping requires domain-specific content knowledge, visuospatial ability, navigation through the field area, creating a mental model of the geology that is consistent with field data, and metacognition. Most post-secondary geology students in the United States receive training in geologic mapping, however, not much is known about the cognitive processes that underlie successful bedrock mapping, or about how these processes change with education and experience. To better understand cognition during geologic mapping, we conducted a 2-year research study in which 67 volunteers representing a range from undergraduate sophomore to 20+ years professional experience completed a suite of cognitive measures plus a 1-day bedrock mapping task in the Rocky Mountains, Montana, USA. In addition to participants' geologic maps and field notes, the cognitive suite included tests and questionnaires designed to measure: (1) prior geologic experience, via a self-report survey; (2) geologic content knowledge, via a modified version of the Geoscience Concept Inventory; (3) visuospatial ability, working memory capacity, and perceptual speed, via paper-and-pencil and computerized tests; (4) use of space and time during mapping via GPS tracking; and (5) problem-solving in the field via think-aloud audio logs during mapping and post-mapping semi-structured interviews. Data were examined for correlations between performance on the mapping task and other measures. We found that both geological knowledge and spatial visualization ability correlated positively with accuracy in the field mapping task. More importantly, we found a Visuospatial Ability × Geological Knowledge interaction, such that visuospatial ability positively predicted mapping performance at low, but not high, levels of geological knowledge. In other words, we found evidence to suggest that visuospatial ability mattered for bedrock mapping for the novices in our sample, but not for the experts. For experienced mappers, we found a significant correlation between GCI scores and the thoroughness with which they covered the map area, plus a relationship between speed and map accuracy such that faster mappers produced better maps. However, fast novice mappers tended to produce the worst maps. Successful mappers formed a mental model of the underlying geologic structure immediately to early in the mapping task, then spent field time collecting observations to confirm, disconfirm, or modify their initial model. In contrast, the least successful mappers (all inexperienced) rarely generated explanations or models of the underlying geologic structure in the field.

A Pipeline for Constructing a Catalog of Multi-method Models of Interacting Galaxies

NASA Astrophysics Data System (ADS)

Holincheck, Anthony

Galaxies represent a fundamental unit of matter for describing the large-scale structure of the universe. One of the major processes affecting the formation and evolution of galaxies are mutual interactions. These interactions can including gravitational tidal distortion, mass transfer, and even mergers. In any hierarchical model, mergers are the key mechanism in galaxy formation and evolution. Computer simulations of interacting galaxies have evolved in the last four decades from simple restricted three-body algorithms to full n-body gravity models. These codes often included sophisticated physical mechanisms such as gas dynamics, supernova feedback, and central blackholes. As the level of complexity, and perhaps realism, increases so does the amount of computational resources needed. These advanced simulations are often used in parameter studies of interactions. They are usually only employed in an ad hoc fashion to recreate the dynamical history of specific sets of interacting galaxies. These specific models are often created with only a few dozen or at most few hundred sets of simulation parameters being attempted. This dissertation presents a prototype pipeline for modeling specific pairs of interacting galaxies in bulk. The process begins with a simple image of the current disturbed morphology and an estimate of distance to the system and mass of the galaxies. With the use of an updated restricted three-body simulation code and the help of Citizen Scientists, the pipeline is able to sample hundreds of thousands of points in parameter space for each system. Through the use of a convenient interface and innovative scoring algorithm, the pipeline aids researchers in identifying the best set of simulation parameters. This dissertation demonstrates a successful recreation of the disturbed morphologies of 62 pairs of interacting galaxies. The pipeline also provides for examining the level of convergence and uniqueness of the dynamical properties of each system. By creating a population of models for actual systems, the current research is able to compare simulation-based and observational values on a larger scale than previous efforts. Several potential relationships between star formation rate and dynamical time since closest approach are presented.

dropEst: pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments.

PubMed

Petukhov, Viktor; Guo, Jimin; Baryawno, Ninib; Severe, Nicolas; Scadden, David T; Samsonova, Maria G; Kharchenko, Peter V

2018-06-19

Recent single-cell RNA-seq protocols based on droplet microfluidics use massively multiplexed barcoding to enable simultaneous measurements of transcriptomes for thousands of individual cells. The increasing complexity of such data creates challenges for subsequent computational processing and troubleshooting of these experiments, with few software options currently available. Here, we describe a flexible pipeline for processing droplet-based transcriptome data that implements barcode corrections, classification of cell quality, and diagnostic information about the droplet libraries. We introduce advanced methods for correcting composition bias and sequencing errors affecting cellular and molecular barcodes to provide more accurate estimates of molecular counts in individual cells.

High Quality Facade Segmentation Based on Structured Random Forest, Region Proposal Network and Rectangular Fitting

NASA Astrophysics Data System (ADS)

Rahmani, K.; Mayer, H.

2018-05-01

In this paper we present a pipeline for high quality semantic segmentation of building facades using Structured Random Forest (SRF), Region Proposal Network (RPN) based on a Convolutional Neural Network (CNN) as well as rectangular fitting optimization. Our main contribution is that we employ features created by the RPN as channels in the SRF.We empirically show that this is very effective especially for doors and windows. Our pipeline is evaluated on two datasets where we outperform current state-of-the-art methods. Additionally, we quantify the contribution of the RPN and the rectangular fitting optimization on the accuracy of the result.

Software/hardware optimization for attenuation-based microtomography using SR at PETRA III (Conference Presentation)

NASA Astrophysics Data System (ADS)

Beckmann, Felix

2016-10-01

The Helmholtz-Zentrum Geesthacht, Germany, is operating the user experiments for microtomography at the beamlines P05 and P07 using synchrotron radiation produced in the storage ring PETRA III at DESY, Hamburg, Germany. In recent years the software pipeline, sample changing hardware for performing high throughput experiments were developed. In this talk the current status of the beamlines will be given. Furthermore, optimisation and automatisation of scanning techniques, will be presented. These are required to scan samples which are larger than the field of view defined by the X-ray beam. The integration into an optimized reconstruction pipeline will be shown.

MICRA: an automatic pipeline for fast characterization of microbial genomes from high-throughput sequencing data.

PubMed

Caboche, Ségolène; Even, Gaël; Loywick, Alexandre; Audebert, Christophe; Hot, David

2017-12-19

The increase in available sequence data has advanced the field of microbiology; however, making sense of these data without bioinformatics skills is still problematic. We describe MICRA, an automatic pipeline, available as a web interface, for microbial identification and characterization through reads analysis. MICRA uses iterative mapping against reference genomes to identify genes and variations. Additional modules allow prediction of antibiotic susceptibility and resistance and comparing the results of several samples. MICRA is fast, producing few false-positive annotations and variant calls compared to current methods, making it a tool of great interest for fully exploiting sequencing data.

E.M.I Effects of Cathodic Protection on Electromagnetic Flowmeters

PubMed Central

Gundogdu, Serdar; Sahin, Ozge

2007-01-01

Electromagnetic flowmeters are used to measure the speed of water flow in water distribution systems. Corrosion problem in metal pipelines can be solved by cathodic protection methods. This paper presents a research on corruptive effects of the cathodic protection system on electromagnetic flowmeter depending on its measuring principle. Experimental measurements are realized on the water distribution pipelines of the Izmir Municipality, Department of Water and Drainage Administration (IZSU) in Turkey and measurement results are given. Experimental results proved that the values measured by the electromagnetic flowmeter (EMF) are affected by cathodic protection system current. Comments on the measurement results are made and precautions to be taken are proposed.

Geologic implications and potential hazards of scour depressions on bering shelf, Alaska

USGS Publications Warehouse

Larsen, M.C.; Nelson, H.; Thor, D.R.

1979-01-01

Flat-bottomed depression 50-150 m in diameter and 60-80 cm deep occur in the floor of Norton Sound, Bering Sea. These large erosional bedforms and associated current ripples are found in areas where sediment grain size is 0.063-0.044 mm (4-4.5 ??), speeds of bottom currents are greatest (20-30 cm/s mean speeds under nonstorm conditions, 70 cm/s during typical storms), circulation of water is constricted by major topographic shoals (kilometers in scale), and small-scale topographic disruptions, such as ice gouges, occur locally on slopes of shoals. These local obstructions on shoals appear to disrupt currents, causing separation of flow and generating eddies that produce large-scale scour. Offshore artificial structures also may disrupt bottom currents in these same areas and have the potential to generate turbulence and induce extensive scour in the area of disrupted flow. The size and character of natural scour depressions in areas of ice gouging suggest that large-scale regions of scour may develop from enlargement of local scour sites around pilings, platforms, or pipelines. Consequently, loss of substrate support for pipelines and gravity structures is possible during frequent autumn storms. ?? 1979 Springer-Verlag New York Inc.

Allele-Specific Alternative mRNA processing (ASARP) | Informatics Technology for Cancer Research (ITCR)

Cancer.gov

A software pipeline for prediction of allele-specific alternative RNA processing events using single RNA-seq data. The current version focuses on prediction of alternative splicing and alternative polyadenylation modulated by genetic variants.

Characterization of Stress Corrosion Cracking Using Laser Ultrasonics

DOT National Transportation Integrated Search

2008-08-31

In-service inspection of gas and oil pipelines is a subject of great current interest. Issues of safety and fitness for service have driven extensive efforts to develop effective monitoring and inspection techniques. A number of effective NDT techniq...

To provide for the resolution of the outstanding issues in the current railway labor-management dispute.

THOMAS, 112th Congress

Rep. Mica, John L. [R-FL-7

2011-11-30

House - 12/01/2011 Referred to the Subcommittee on Railroads, Pipelines, and Hazardous Materials. (All Actions) Tracker: This bill has the status IntroducedHere are the steps for Status of Legislation:

Towngas Lantau link beach approach, Hong Kong and China Gas Co. Ltd.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Callnon, D.P.; Bertolucci, L.

1997-07-01

Horizontal directional drilling (HDD) laid dual, 12-in. OD, natural gas pipelines beneath a critical sea wall on Lantau island, Hong Kong New Territories. This was part of a 30-mile gas pipeline crossing under the South China Sea associated with the Towngas Lantau construction project for Hong Kong`s new Chep Lap Kok International Airport. During a twenty-one day project, Cherrington Corp. drilled and forward-reamed two, 20-in., 1,294-ft. holes to pull back the twin pipelines. The project was completed during typhoon weather, strong currents and logistical problems associated with operation in a remote uninhabited area. The successful installation of the twin gasmore » lines was the result of proper hole design, high-quality surveying techniques and innovative directional drilling methods. Each hole exited approximately 90-ft. from the pre-installed product pipe in the sea floor trench. A 20-in. reamer with bull-nose and rear stabilizer was used to open both holes from 9 to 20-inches.« less

CERES: A Set of Automated Routines for Echelle Spectra

NASA Astrophysics Data System (ADS)

Brahm, Rafael; Jordán, Andrés; Espinoza, Néstor

2017-03-01

We present the Collection of Elemental Routines for Echelle Spectra (CERES). These routines were developed for the construction of automated pipelines for the reduction, extraction, and analysis of spectra acquired with different instruments, allowing the obtention of homogeneous and standardized results. This modular code includes tools for handling the different steps of the processing: CCD image reductions; identification and tracing of the echelle orders; optimal and rectangular extraction; computation of the wavelength solution; estimation of radial velocities; and rough and fast estimation of the atmospheric parameters. Currently, CERES has been used to develop automated pipelines for 13 different spectrographs, namely CORALIE, FEROS, HARPS, ESPaDOnS, FIES, PUCHEROS, FIDEOS, CAFE, DuPont/Echelle, Magellan/Mike, Keck/HIRES, Magellan/PFS, and APO/ARCES, but the routines can be easily used to deal with data coming from other spectrographs. We show the high precision in radial velocity that CERES achieves for some of these instruments, and we briefly summarize some results that have already been obtained using the CERES pipelines.

Neural-Fuzzy model Based Steel Pipeline Multiple Cracks Classification

NASA Astrophysics Data System (ADS)

Elwalwal, Hatem Mostafa; Mahzan, Shahruddin Bin Hj.; Abdalla, Ahmed N.

2017-10-01

While pipes are cheaper than other means of transportation, this cost saving comes with a major price: pipes are subject to cracks, corrosion etc., which in turn can cause leakage and environmental damage. In this paper, Neural-Fuzzy model for multiple cracks classification based on Lamb Guide Wave. Simulation results for 42 sample were collected using ANSYS software. The current research object to carry on the numerical simulation and experimental study, aiming at finding an effective way to detection and the localization of cracks and holes defects in the main body of pipeline. Considering the damage form of multiple cracks and holes which may exist in pipeline, to determine the respective position in the steel pipe. In addition, the technique used in this research a guided lamb wave based structural health monitoring method whereas piezoelectric transducers will use as exciting and receiving sensors by Pitch-Catch method. Implementation of simple learning mechanism has been developed specially for the ANN for fuzzy the system represented.

Cathodic protection for pipelines crossing the Mackenzie River at Norman Wells, Northwest Territories, Canada

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wiskel, B.J.; Wozniewski, A.

This paper reports on an oil production facility at Norman Wells, N.W.T. The production is centered around the Mackenzie River with oil being produced from wells located on natural and artificial islands as well as from wells located on the mainland. Pipelines have been installed beneath the river to route production from the islands back to the central processing plant on the mainland. Cathodic protection was required for the pipelines crossing the Mackenzie River to prevent external corrosion in an environmentally sensitive area. Several difficulties were encountered in preparing an optimum cathodic design due to the unique production scheme, permafrostmore » and logistical problems associated with the northern location. An innovative approach was therefore required for the design, installation and testing of the cathodic protection system. This paper describes evolution of the cathodic protection system from a conventional one to a system utilizing a close groundbed concept and unique current return path.« less

Comparison of software packages for detecting differential expression in RNA-seq studies

PubMed Central

Seyednasrollah, Fatemeh; Laiho, Asta

2015-01-01

RNA-sequencing (RNA-seq) has rapidly become a popular tool to characterize transcriptomes. A fundamental research problem in many RNA-seq studies is the identification of reliable molecular markers that show differential expression between distinct sample groups. Together with the growing popularity of RNA-seq, a number of data analysis methods and pipelines have already been developed for this task. Currently, however, there is no clear consensus about the best practices yet, which makes the choice of an appropriate method a daunting task especially for a basic user without a strong statistical or computational background. To assist the choice, we perform here a systematic comparison of eight widely used software packages and pipelines for detecting differential expression between sample groups in a practical research setting and provide general guidelines for choosing a robust pipeline. In general, our results demonstrate how the data analysis tool utilized can markedly affect the outcome of the data analysis, highlighting the importance of this choice. PMID:24300110

Comparison of software packages for detecting differential expression in RNA-seq studies.

PubMed

Seyednasrollah, Fatemeh; Laiho, Asta; Elo, Laura L

2015-01-01

RNA-sequencing (RNA-seq) has rapidly become a popular tool to characterize transcriptomes. A fundamental research problem in many RNA-seq studies is the identification of reliable molecular markers that show differential expression between distinct sample groups. Together with the growing popularity of RNA-seq, a number of data analysis methods and pipelines have already been developed for this task. Currently, however, there is no clear consensus about the best practices yet, which makes the choice of an appropriate method a daunting task especially for a basic user without a strong statistical or computational background. To assist the choice, we perform here a systematic comparison of eight widely used software packages and pipelines for detecting differential expression between sample groups in a practical research setting and provide general guidelines for choosing a robust pipeline. In general, our results demonstrate how the data analysis tool utilized can markedly affect the outcome of the data analysis, highlighting the importance of this choice. © The Author 2013. Published by Oxford University Press.

Corrosion rate of API 5L Gr. X60 multipurpose steel pipeline under combined effect of water and crude oil

NASA Astrophysics Data System (ADS)

Miao, Jian; Wang, Qiang

2016-09-01

Multipurpose pipeline is often seriously corroded during its service life, and the phenomenon is more prominent once the transportation medium is changed. Electrochemical polarization curves and impedance spectroscopy of the API 5L Gr. X60 steel pipeline's corrosion process in sedimentary water with different ion types and their concentrations have been studied in this work. The results showed that the corrosion rates were found to be 0.00418 and 0.00232 mm/a for pure water and crude oil, respectively. However, for the mixtures of water and crude oil (with water content increased from 0.2 vol% to 10 vol%), the corrosion rate increased consistently and reached a maximum value of 0.15557 mm/a for 10 vol% water in crude oil. The effect of the concentration of various ions, namely, chloride, bicarbonate and sulfate in (oil/water) mixtures on the corrosion rate was characterized by weight-loss method. The results showed that with increasing the ions' concentrations, the corresponding exchange current density increased significantly. The results were further supported by the observations of corrosion morphology using scanning electron microscopy and are helpful in devising guidelines which would help in reducing corrosion in multipurpose transport pipelines involving a change of transported medium during their service life.

Semi-Automatic Segmentation Software for Quantitative Clinical Brain Glioblastoma Evaluation

PubMed Central

Zhu, Y; Young, G; Xue, Z; Huang, R; You, H; Setayesh, K; Hatabu, H; Cao, F; Wong, S.T.

2012-01-01

Rationale and Objectives Quantitative measurement provides essential information about disease progression and treatment response in patients with Glioblastoma multiforme (GBM). The goal of this paper is to present and validate a software pipeline for semi-automatic GBM segmentation, called AFINITI (Assisted Follow-up in NeuroImaging of Therapeutic Intervention), using clinical data from GBM patients. Materials and Methods Our software adopts the current state-of-the-art tumor segmentation algorithms and combines them into one clinically usable pipeline. Both the advantages of the traditional voxel-based and the deformable shape-based segmentation are embedded into the software pipeline. The former provides an automatic tumor segmentation scheme based on T1- and T2-weighted MR brain data, and the latter refines the segmentation results with minimal manual input. Results Twenty six clinical MR brain images of GBM patients were processed and compared with manual results. The results can be visualized using the embedded graphic user interface (GUI). Conclusion Validation results using clinical GBM data showed high correlation between the AFINITI results and manual annotation. Compared to the voxel-wise segmentation, AFINITI yielded more accurate results in segmenting the enhanced GBM from multimodality MRI data. The proposed pipeline could be used as additional information to interpret MR brain images in neuroradiology. PMID:22591720

The bachelor's to Ph.D. STEM pipeline no longer leaks more women than men: a 30-year analysis.

PubMed

Miller, David I; Wai, Jonathan

2015-01-01

For decades, research and public discourse about gender and science have often assumed that women are more likely than men to "leak" from the science pipeline at multiple points after entering college. We used retrospective longitudinal methods to investigate how accurately this "leaky pipeline" metaphor has described the bachelor's to Ph.D. transition in science, technology, engineering, and mathematics (STEM) fields in the U.S. since the 1970s. Among STEM bachelor's degree earners in the 1970s and 1980s, women were less likely than men to later earn a STEM Ph.D. However, this gender difference closed in the 1990s. Qualitatively similar trends were found across STEM disciplines. The leaky pipeline metaphor therefore partially explains historical gender differences in the U.S., but no longer describes current gender differences in the bachelor's to Ph.D. transition in STEM. The results help constrain theories about women's underrepresentation in STEM. Overall, these results point to the need to understand gender differences at the bachelor's level and below to understand women's representation in STEM at the Ph.D. level and above. Consistent with trends at the bachelor's level, women's representation at the Ph.D. level has been recently declining for the first time in over 40 years.

Metric Evaluation Pipeline for 3d Modeling of Urban Scenes

NASA Astrophysics Data System (ADS)

Bosch, M.; Leichtman, A.; Chilcott, D.; Goldberg, H.; Brown, M.

2017-05-01

Publicly available benchmark data and metric evaluation approaches have been instrumental in enabling research to advance state of the art methods for remote sensing applications in urban 3D modeling. Most publicly available benchmark datasets have consisted of high resolution airborne imagery and lidar suitable for 3D modeling on a relatively modest scale. To enable research in larger scale 3D mapping, we have recently released a public benchmark dataset with multi-view commercial satellite imagery and metrics to compare 3D point clouds with lidar ground truth. We now define a more complete metric evaluation pipeline developed as publicly available open source software to assess semantically labeled 3D models of complex urban scenes derived from multi-view commercial satellite imagery. Evaluation metrics in our pipeline include horizontal and vertical accuracy and completeness, volumetric completeness and correctness, perceptual quality, and model simplicity. Sources of ground truth include airborne lidar and overhead imagery, and we demonstrate a semi-automated process for producing accurate ground truth shape files to characterize building footprints. We validate our current metric evaluation pipeline using 3D models produced using open source multi-view stereo methods. Data and software is made publicly available to enable further research and planned benchmarking activities.

75 FR 24655 - Order Finding That the ICE Waha Financial Basis Contract Traded on the IntercontinentalExchange...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-05-05

... Texas. Pipelines include El Paso Natural Gas, Transwestern Pipeline, Natural Gas Pipeline Co. of America, Northern Natural Gas, Delhi Pipeline, Oasis Pipeline, EPGT Texas and Lone Star Pipeline. The Platt's [[Page... pipelines. These pipelines bring in natural gas from fields in the Gulf Coast region and ship it to major...

Registratiom of TM data to digital elevation models

NASA Technical Reports Server (NTRS)

1984-01-01

Several problems arise when attempting to register LANDSAT thematic mapper data to U.S. B Geological Survey digital elevation models (DEMs). The TM data are currently available only in a rotated variant of the Space Oblique Mercator (SOM) map projection. Geometric transforms are thus; required to access TM data in the geodetic coordinates used by the DEMs. Due to positional errors in the TM data, these transforms require some sort of external control. The spatial resolution of TM data exceeds that of the most commonly DEM data. Oversampling DEM data to TM resolution introduces systematic noise. Common terrain processing algorithms (e.g., close computation) compound this problem by acting as high-pass filters.

MSP-HTPrimer: a high-throughput primer design tool to improve assay design for DNA methylation analysis in epigenetics.

PubMed

Pandey, Ram Vinay; Pulverer, Walter; Kallmeyer, Rainer; Beikircher, Gabriel; Pabinger, Stephan; Kriegner, Albert; Weinhäusel, Andreas

2016-01-01

Bisulfite (BS) conversion-based and methylation-sensitive restriction enzyme (MSRE)-based PCR methods have been the most commonly used techniques for locus-specific DNA methylation analysis. However, both methods have advantages and limitations. Thus, an integrated approach would be extremely useful to quantify the DNA methylation status successfully with great sensitivity and specificity. Designing specific and optimized primers for target regions is the most critical and challenging step in obtaining the adequate DNA methylation results using PCR-based methods. Currently, no integrated, optimized, and high-throughput methylation-specific primer design software methods are available for both BS- and MSRE-based methods. Therefore an integrated, powerful, and easy-to-use methylation-specific primer design pipeline with great accuracy and success rate will be very useful. We have developed a new web-based pipeline, called MSP-HTPrimer, to design primers pairs for MSP, BSP, pyrosequencing, COBRA, and MSRE assays on both genomic strands. First, our pipeline converts all target sequences into bisulfite-treated templates for both forward and reverse strand and designs all possible primer pairs, followed by filtering for single nucleotide polymorphisms (SNPs) and known repeat regions. Next, each primer pairs are annotated with the upstream and downstream RefSeq genes, CpG island, and cut sites (for COBRA and MSRE). Finally, MSP-HTPrimer selects specific primers from both strands based on custom and user-defined hierarchical selection criteria. MSP-HTPrimer produces a primer pair summary output table in TXT and HTML format for display and UCSC custom tracks for resulting primer pairs in GTF format. MSP-HTPrimer is an integrated, web-based, and high-throughput pipeline and has no limitation on the number and size of target sequences and designs MSP, BSP, pyrosequencing, COBRA, and MSRE assays. It is the only pipeline, which automatically designs primers on both genomic strands to increase the success rate. It is a standalone web-based pipeline, which is fully configured within a virtual machine and thus can be readily used without any configuration. We have experimentally validated primer pairs designed by our pipeline and shown a very high success rate of primer pairs: out of 66 BSP primer pairs, 63 were successfully validated without any further optimization step and using the same qPCR conditions. The MSP-HTPrimer pipeline is freely available from http://sourceforge.net/p/msp-htprimer.

Pulsed eddy current differential probe to detect the defects in a stainless steel pipe

NASA Astrophysics Data System (ADS)

Angani, C. S.; Park, D. G.; Kim, C. G.; Leela, P.; Kishore, M.; Cheong, Y. M.

2011-04-01

Pulsed eddy current (PEC) is an electromagnetic nondestructive technique widely used to detect and quantify the flaws in conducting materials. In the present study a differential Hall-sensor probe which is used in the PEC system has been fabricated for the detection of defects in stainless steel pipelines. The differential probe has an exciting coil with two Hall-sensors. A stainless steel test sample with electrical discharge machining (EDM) notches under different depths of 1-5 mm was made and the sample was laminated by plastic insulation having uniform thickness to simulate the pipelines in nuclear power plants (NPPs). The driving coil in the probe is excited by a rectangular current pulse and the resultant response, which is the difference of the two Hall-sensors, has been detected as the PEC probe signal. The discriminating time domain features of the detected pulse such as peak value and time to zero are used to interpret the experimental results with the defects in the test sample. A feature extraction technique such as spectral power density has been devised to infer the PEC response.

DotMapper: an open source tool for creating interactive disease point maps.

PubMed

Smith, Catherine M; Hayward, Andrew C

2016-04-12

Molecular strain typing of tuberculosis isolates has led to increased understanding of the epidemiological characteristics of the disease and improvements in its control, diagnosis and treatment. However, molecular cluster investigations, which aim to detect previously unidentified cases, remain challenging. Interactive dot mapping is a simple approach which could aid investigations by highlighting cases likely to share epidemiological links. Current tools generally require technical expertise or lack interactivity. We designed a flexible application for producing disease dot maps using Shiny, a web application framework for the statistical software, R. The application displays locations of cases on an interactive map colour coded according to levels of categorical variables such as demographics and risk factors. Cases can be filtered by selecting combinations of these characteristics and by notification date. It can be used to rapidly identify geographic patterns amongst cases in molecular clusters of tuberculosis in space and time; generate hypotheses about disease transmission; identify outliers, and guide targeted control measures. DotMapper is a user-friendly application which enables rapid production of maps displaying locations of cases and their epidemiological characteristics without the need for specialist training in geographic information systems. Enhanced understanding of tuberculosis transmission using this application could facilitate improved detection of cases with epidemiological links and therefore lessen the public health impacts of the disease. It is a flexible system and also has broad international potential application to other investigations using geo-coded health information.

Cosmic Dawn Intensity Mapper

NASA Astrophysics Data System (ADS)

Cooray, Asantha

2018-01-01

Cosmic Dawn Intensity Mapper (CDIM) is a 1.0m-class infrared telescope capable of three-dimensional spectro-imaging observations over the wavelength range of 0.75 to 7.5 microns, at a spectral resolving power at or better than 300. This will be achieved with linear variablefilters (LVFs) and a large field-of-view (FoV). The survey strategy using spacecraft operations following a shift and stare mode will result in more than 1300 independent narrow-band spectral images of the sky at a given location. Currently prioritized science programs, taking over three-years of a five-year mission, will be accomplished with a two-tiered wedding-cake survey with the shallowest spanning close to 300 sq. degrees and the deepest tier of about 25 sq. degrees.The remaining two-years could be used for additional survey programs (the wide tier can be expanded to 1000 sq. degrees) or for use by the astronomical community through a General Observing (GO) campaign. CDIM survey data will allow us to (i) establish the initial mass function of stars in galaxies present during reionization, (ii) definitively address AGN/quasar contribution to the reionization photon budget; (iii) establish the environmental dependence of star-formation during reionization through clustering and other environmental measurements; (iv) establish the metal abundance of first-light galaxies during reionization over two decades of stellar mass; (v) measure 3D intensity fluctuations during reionization in both Ly-alpha and H-alpha; and (vi) combine intensity fluctuations with 21-cm data to establish the topology of reionization bubbles.

Nozzle Initiative Industry Advisory Committee on Standardization of Carbon-Phenolic Test Methods and Specifications

NASA Technical Reports Server (NTRS)

Bull, William B. (Compiler); Pinoli, Pat C. (Compiler); Upton, Cindy G. (Compiler); Day, Tony (Compiler); Hill, Keith (Compiler); Stone, Frank (Compiler); Hall, William B.

1994-01-01

This report is a compendium of the presentations of the 12th biannual meeting of the Industry Advisory Committee under the Solid Propulsion Integrity Program. A complete transcript of the welcoming talks is provided. Presentation outlines and overheads are included for the other sessions: SPIP Overview, Past, Current and Future Activity; Test Methods Manual and Video Tape Library; Air Force Developed Computer Aided Cure Program and SPC/TQM Experience; Magneto-Optical mapper (MOM), Joint Army/NASA program to assess composite integrity; Permeability Testing; Moisture Effusion Testing by Karl Fischer Analysis; Statistical Analysis of Acceptance Test Data; NMR Phenolic Resin Advancement; Constituent Testing Highlights on the LDC Optimization Program; Carbon Sulfur Study, Performance Related Testing; Current Rayon Specifications and Future Availability; RSRM/SPC Implementation; SRM Test Methods, Delta/Titan/FBM/RSRM; and Open Forum on Performance Based Acceptance Testing -- Industry Experience.

76 FR 29333 - Pipeline Safety: Meetings of the Technical Pipeline Safety Standards Committee and the Technical...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-05-20

... DEPARTMENT OF TRANSPORTATION Pipeline and Hazardous Materials Safety Administration [Docket No... Technical Hazardous Liquid Pipeline Safety Standards Committee AGENCY: Pipeline and Hazardous Materials... for natural gas pipelines and for hazardous liquid pipelines. Both committees were established under...

77 FR 34123 - Pipeline Safety: Public Meeting on Integrity Management of Gas Distribution Pipelines

Federal Register 2010, 2011, 2012, 2013, 2014

2012-06-08

... DEPARTMENT OF TRANSPORTATION Pipeline and Hazardous Materials Safety Administration [Docket No. PHMSA-2012-0100] Pipeline Safety: Public Meeting on Integrity Management of Gas Distribution Pipelines AGENCY: Office of Pipeline Safety, Pipeline and Hazardous Materials Safety Administration, DOT. ACTION...

Gap-free segmentation of vascular networks with automatic image processing pipeline.

PubMed

Hsu, Chih-Yang; Ghaffari, Mahsa; Alaraj, Ali; Flannery, Michael; Zhou, Xiaohong Joe; Linninger, Andreas

2017-03-01

Current image processing techniques capture large vessels reliably but often fail to preserve connectivity in bifurcations and small vessels. Imaging artifacts and noise can create gaps and discontinuity of intensity that hinders segmentation of vascular trees. However, topological analysis of vascular trees require proper connectivity without gaps, loops or dangling segments. Proper tree connectivity is also important for high quality rendering of surface meshes for scientific visualization or 3D printing. We present a fully automated vessel enhancement pipeline with automated parameter settings for vessel enhancement of tree-like structures from customary imaging sources, including 3D rotational angiography, magnetic resonance angiography, magnetic resonance venography, and computed tomography angiography. The output of the filter pipeline is a vessel-enhanced image which is ideal for generating anatomical consistent network representations of the cerebral angioarchitecture for further topological or statistical analysis. The filter pipeline combined with computational modeling can potentially improve computer-aided diagnosis of cerebrovascular diseases by delivering biometrics and anatomy of the vasculature. It may serve as the first step in fully automatic epidemiological analysis of large clinical datasets. The automatic analysis would enable rigorous statistical comparison of biometrics in subject-specific vascular trees. The robust and accurate image segmentation using a validated filter pipeline would also eliminate operator dependency that has been observed in manual segmentation. Moreover, manual segmentation is time prohibitive given that vascular trees have more than thousands of segments and bifurcations so that interactive segmentation consumes excessive human resources. Subject-specific trees are a first step toward patient-specific hemodynamic simulations for assessing treatment outcomes. Copyright © 2017 Elsevier Ltd. All rights reserved.

JMS: An Open Source Workflow Management System and Web-Based Cluster Front-End for High Performance Computing.

PubMed

Brown, David K; Penkler, David L; Musyoka, Thommas M; Bishop, Özlem Tastan

2015-01-01

Complex computational pipelines are becoming a staple of modern scientific research. Often these pipelines are resource intensive and require days of computing time. In such cases, it makes sense to run them over high performance computing (HPC) clusters where they can take advantage of the aggregated resources of many powerful computers. In addition to this, researchers often want to integrate their workflows into their own web servers. In these cases, software is needed to manage the submission of jobs from the web interface to the cluster and then return the results once the job has finished executing. We have developed the Job Management System (JMS), a workflow management system and web interface for high performance computing (HPC). JMS provides users with a user-friendly web interface for creating complex workflows with multiple stages. It integrates this workflow functionality with the resource manager, a tool that is used to control and manage batch jobs on HPC clusters. As such, JMS combines workflow management functionality with cluster administration functionality. In addition, JMS provides developer tools including a code editor and the ability to version tools and scripts. JMS can be used by researchers from any field to build and run complex computational pipelines and provides functionality to include these pipelines in external interfaces. JMS is currently being used to house a number of bioinformatics pipelines at the Research Unit in Bioinformatics (RUBi) at Rhodes University. JMS is an open-source project and is freely available at https://github.com/RUBi-ZA/JMS.

Filling reference gaps via assembling DNA barcodes using high-throughput sequencing—moving toward barcoding the world

PubMed Central

Zhou, Chengran

2017-01-01

Abstract Over the past decade, biodiversity researchers have dedicated tremendous efforts to constructing DNA reference barcodes for rapid species registration and identification. Although analytical cost for standard DNA barcoding has been significantly reduced since early 2000, further dramatic reduction in barcoding costs is unlikely because Sanger sequencing is approaching its limits in throughput and chemistry cost. Constraints in barcoding cost not only led to unbalanced barcoding efforts around the globe, but also prevented high-throughput sequencing (HTS)–based taxonomic identification from applying binomial species names, which provide crucial linkages to biological knowledge. We developed an Illumina-based pipeline, HIFI-Barcode, to produce full-length Cytochrome c oxidase subunit I (COI) barcodes from pooled polymerase chain reaction amplicons generated by individual specimens. The new pipeline generated accurate barcode sequences that were comparable to Sanger standards, even for different haplotypes of the same species that were only a few nucleotides different from each other. Additionally, the new pipeline was much more sensitive in recovering amplicons at low quantity. The HIFI-Barcode pipeline successfully recovered barcodes from more than 78% of the polymerase chain reactions that didn’t show clear bands on the electrophoresis gel. Moreover, sequencing results based on the single molecular sequencing platform Pacbio confirmed the accuracy of the HIFI-Barcode results. Altogether, the new pipeline can provide an improved solution to produce full-length reference barcodes at about one-tenth of the current cost, enabling construction of comprehensive barcode libraries for local fauna, leading to a feasible direction for DNA barcoding global biomes. PMID:29077841

JMS: An Open Source Workflow Management System and Web-Based Cluster Front-End for High Performance Computing

PubMed Central

Brown, David K.; Penkler, David L.; Musyoka, Thommas M.; Bishop, Özlem Tastan

2015-01-01

Complex computational pipelines are becoming a staple of modern scientific research. Often these pipelines are resource intensive and require days of computing time. In such cases, it makes sense to run them over high performance computing (HPC) clusters where they can take advantage of the aggregated resources of many powerful computers. In addition to this, researchers often want to integrate their workflows into their own web servers. In these cases, software is needed to manage the submission of jobs from the web interface to the cluster and then return the results once the job has finished executing. We have developed the Job Management System (JMS), a workflow management system and web interface for high performance computing (HPC). JMS provides users with a user-friendly web interface for creating complex workflows with multiple stages. It integrates this workflow functionality with the resource manager, a tool that is used to control and manage batch jobs on HPC clusters. As such, JMS combines workflow management functionality with cluster administration functionality. In addition, JMS provides developer tools including a code editor and the ability to version tools and scripts. JMS can be used by researchers from any field to build and run complex computational pipelines and provides functionality to include these pipelines in external interfaces. JMS is currently being used to house a number of bioinformatics pipelines at the Research Unit in Bioinformatics (RUBi) at Rhodes University. JMS is an open-source project and is freely available at https://github.com/RUBi-ZA/JMS. PMID:26280450

Filling reference gaps via assembling DNA barcodes using high-throughput sequencing-moving toward barcoding the world.

PubMed

Liu, Shanlin; Yang, Chentao; Zhou, Chengran; Zhou, Xin

2017-12-01

Over the past decade, biodiversity researchers have dedicated tremendous efforts to constructing DNA reference barcodes for rapid species registration and identification. Although analytical cost for standard DNA barcoding has been significantly reduced since early 2000, further dramatic reduction in barcoding costs is unlikely because Sanger sequencing is approaching its limits in throughput and chemistry cost. Constraints in barcoding cost not only led to unbalanced barcoding efforts around the globe, but also prevented high-throughput sequencing (HTS)-based taxonomic identification from applying binomial species names, which provide crucial linkages to biological knowledge. We developed an Illumina-based pipeline, HIFI-Barcode, to produce full-length Cytochrome c oxidase subunit I (COI) barcodes from pooled polymerase chain reaction amplicons generated by individual specimens. The new pipeline generated accurate barcode sequences that were comparable to Sanger standards, even for different haplotypes of the same species that were only a few nucleotides different from each other. Additionally, the new pipeline was much more sensitive in recovering amplicons at low quantity. The HIFI-Barcode pipeline successfully recovered barcodes from more than 78% of the polymerase chain reactions that didn't show clear bands on the electrophoresis gel. Moreover, sequencing results based on the single molecular sequencing platform Pacbio confirmed the accuracy of the HIFI-Barcode results. Altogether, the new pipeline can provide an improved solution to produce full-length reference barcodes at about one-tenth of the current cost, enabling construction of comprehensive barcode libraries for local fauna, leading to a feasible direction for DNA barcoding global biomes. © The Authors 2017. Published by Oxford University Press.

76 FR 43743 - Pipeline Safety: Meetings of the Technical Pipeline Safety Standards Committee and the Technical...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-21

... DEPARTMENT OF TRANSPORTATION Pipeline and Hazardous Materials Safety Administration [Docket No. PHMSA-2011-0127] Pipeline Safety: Meetings of the Technical Pipeline Safety Standards Committee and the Technical Hazardous Liquid Pipeline Safety Standards Committee AGENCY: Pipeline and Hazardous Materials...

77 FR 16471 - Pipeline Safety: Implementation of the National Registry of Pipeline and Liquefied Natural Gas...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-03-21

... Registry of Pipeline and Liquefied Natural Gas Operators AGENCY: Pipeline and Hazardous Materials Safety... DEPARTMENT OF TRANSPORTATION Pipeline and Hazardous Materials Safety Administration 49 CFR Parts... Register (75 FR 72878) titled: ``Pipeline Safety: Updates to Pipeline and Liquefied Natural Gas Reporting...