Predicting cotton yield of small field plots in a cotton breeding program using UAV imagery data

NASA Astrophysics Data System (ADS)

Maja, Joe Mari J.; Campbell, Todd; Camargo Neto, Joao; Astillo, Philip

2016-05-01

One of the major criteria used for advancing experimental lines in a breeding program is yield performance. Obtaining yield performance data requires machine picking each plot with a cotton picker, modified to weigh individual plots. Harvesting thousands of small field plots requires a great deal of time and resources. The efficiency of cotton breeding could be increased significantly while the cost could be decreased with the availability of accurate methods to predict yield performance. This work is investigating the feasibility of using an image processing technique using a commercial off-the-shelf (COTS) camera mounted on a small Unmanned Aerial Vehicle (sUAV) to collect normal RGB images in predicting cotton yield on small plot. An orthonormal image was generated from multiple images and used to process multiple, segmented plots. A Gaussian blur was used to eliminate the high frequency component of the images, which corresponds to the cotton pixels, and used image subtraction technique to generate high frequency pixel images. The cotton pixels were then separated using k-means cluster with 5 classes. Based on the current work, the calculated percentage cotton area was computed using the generated high frequency image (cotton pixels) divided by the total area of the plot. Preliminary results showed (five flights, 3 altitudes) that cotton cover on multiple pre-selected 227 sq. m. plots produce an average of 8% which translate to approximately 22.3 kgs. of cotton. The yield prediction equation generated from the test site was then use on a separate validation site and produced a prediction error of less than 10%. In summary, the results indicate that a COTS camera with an appropriate image processing technique can produce results that are comparable to expensive sensors.

Developing nondestructive techniques for managing conflicts between fisheries and double-crested cormorant colonies

USGS Publications Warehouse

Suzuki, Yasuko; Roby, Daniel D.; Lyons, Donald E.; Courtot, Karen; Collis, Ken

2015-01-01

Double-crested cormorants (Phalacrocorax auritus) have been identified as the source of significant mortality to juvenile salmonids (Oncorhynchus spp.) in the Columbia River Basin. Management plans for reducing the size of a large colony on East Sand Island (OR, USA) in the Columbia River estuary are currently being developed. We evaluated habitat enhancement and social attraction as nondestructive techniques for managing cormorant nesting colonies during 2004–2007. We tested these techniques on unoccupied plots adjacent to the East Sand Island cormorant colony. Cormorants quickly colonized these plots and successfully raised young. Cormorants also were attracted to nest and raised young on similar plots at 2 islands approximately 25 km from East Sand Island; 1 island had a history of successful cormorant nesting whereas the other was a site where cormorants had previously nested unsuccessfully. On a third island with no history of cormorant nesting or nesting attempts, these techniques were unsuccessful at attracting cormorants to nest. Our results suggest that some important factors influencing attraction of nesting cormorants using these techniques include history of cormorant nesting, disturbance, and presence of breeding cormorants nearby. These techniques may be effective in redistributing nesting cormorants away from areas where fish stocks of conservation concern are susceptible to predation, especially if sites with a recent history of cormorant nesting are available within their foraging or dispersal range. Published 2015. Wiley Periodicals, Inc. This article is a US Government work and, as such, is in the public domain in the United States of America.

Experimental removal of woody vegetation does not increase nesting success or fledgling production in two grassland sparrows (Ammodramus) in Pennsylvania

USGS Publications Warehouse

Hill, Jason M.; Diefenbach, Duane R.

2013-01-01

The influence of vegetation structure on the probability of daily nest survival (DNS) for grassland passerines has received considerable attention. Some correlative studies suggest that the presence of woody vegetation lowers DNS. Over 3 years (2009–2011), we monitored 215 nests of the Grasshopper Sparrow (Ammodramus savannarum) and Henslow's Sparrow (A. henslowii) on 162 ha of reclaimed surface-mine grasslands in Pennsylvania. We removed shrubs from treatment plots with ≤36% areal coverage of woody vegetation in a before-after-control-impact-pairs (BACIP) design framework. Daily nest survival (95% CI: 0.94–0.96) was as high as previous studies have reported but was not associated with woody vegetative cover, proximity to woody vegetation, or woody stem density. Variation in DNS was best explained by increasing nonwoody-vegetation height. Grasshopper Sparrow fledgling production on treatment plots in 2010 (95% CI: 3.3–4.7) and 2011 (95% CI: 3.8–5.0) was similar to baseline conditions of treatment plots (95% CI: 3.4–4.9) and control plots (95% CI: 3.2–4.5) in 2009. Fledgling production was associated with thatch depth (β ± SE = 0.13 ± 0.09) and bare ground (β ± SE = -2.62 ± 1.29) adjacent to the nest and plot woody vegetative cover ( ± SE = -3.09 ± 1.02). Our experimental research suggests that overall reproductive success of Grasshopper and Henslow's sparrows on reclaimed surfacemine grasslands is driven by a suite of largely nonwoody—vegetation components, and both species can successfully nest and produce young in habitats with greater amounts of scattered woody vegetation than has generally been considered.

Improved discrimination among similar agricultural plots using red-and-green-based pseudo-colour imaging

NASA Astrophysics Data System (ADS)

Doi, Ryoichi

2016-04-01

The effects of a pseudo-colour imaging method were investigated by discriminating among similar agricultural plots in remote sensing images acquired using the Airborne Visible/Infrared Imaging Spectrometer (Indiana, USA) and the Landsat 7 satellite (Fergana, Uzbekistan), and that provided by GoogleEarth (Toyama, Japan). From each dataset, red (R)-green (G)-R-G-blue yellow (RGrgbyB), and RGrgby-1B pseudo-colour images were prepared. From each, cyan, magenta, yellow, key black, L*, a*, and b* derivative grayscale images were generated. In the Airborne Visible/Infrared Imaging Spectrometer image, pixels were selected for corn no tillage (29 pixels), corn minimum tillage (27), and soybean (34) plots. Likewise, in the Landsat 7 image, pixels representing corn (73 pixels), cotton (110), and wheat (112) plots were selected, and in the GoogleEarth image, those representing soybean (118 pixels) and rice (151) were selected. When the 14 derivative grayscale images were used together with an RGB yellow grayscale image, the overall classification accuracy improved from 74 to 94% (Airborne Visible/Infrared Imaging Spectrometer), 64 to 83% (Landsat), or 77 to 90% (GoogleEarth). As an indicator of discriminatory power, the kappa significance improved 1018-fold (Airborne Visible/Infrared Imaging Spectrometer) or greater. The derivative grayscale images were found to increase the dimensionality and quantity of data. Herein, the details of the increases in dimensionality and quantity are further analysed and discussed.

Old-growth and mature forests near spotted owl nests in western Oregon

NASA Technical Reports Server (NTRS)

Ripple, William J.; Johnson, David H.; Hershey, K. T.; Meslow, E. Charles

1995-01-01

We investigated how the amount of old-growth and mature forest influences the selection of nest sites by northern spotted owls (Strix occidentalis caurina) in the Central Cascade Mountains of Oregon. We used 7 different plot sizes to compare the proportion of mature and old-growth forest between 30 nest sites and 30 random sites. The proportion of old-growth and mature forest was significantly greater at nests sites than at random sites for all plot sizes (P less than or equal to 0.01). Thus, management of the spotted owl might require setting the percentage of old-growth and mature forest retained from harvesting at least 1 standard deviation above the mean for the 30 nest sites we examined.

Probability of detection of nests and implications for survey design

USGS Publications Warehouse

Smith, P.A.; Bart, J.; Lanctot, Richard B.; McCaffery, B.J.; Brown, S.

2009-01-01

Surveys based on double sampling include a correction for the probability of detection by assuming complete enumeration of birds in an intensively surveyed subsample of plots. To evaluate this assumption, we calculated the probability of detecting active shorebird nests by using information from observers who searched the same plots independently. Our results demonstrate that this probability varies substantially by species and stage of the nesting cycle but less by site or density of nests. Among the species we studied, the estimated single-visit probability of nest detection during the incubation period varied from 0.21 for the White-rumped Sandpiper (Calidris fuscicollis), the most difficult species to detect, to 0.64 for the Western Sandpiper (Calidris mauri), the most easily detected species, with a mean across species of 0.46. We used these detection probabilities to predict the fraction of persistent nests found over repeated nest searches. For a species with the mean value for detectability, the detection rate exceeded 0.85 after four visits. This level of nest detection was exceeded in only three visits for the Western Sandpiper, but six to nine visits were required for the White-rumped Sandpiper, depending on the type of survey employed. Our results suggest that the double-sampling method's requirement of nearly complete counts of birds in the intensively surveyed plots is likely to be met for birds with nests that survive over several visits of nest searching. Individuals with nests that fail quickly or individuals that do not breed can be detected with high probability only if territorial behavior is used to identify likely nesting pairs. ?? The Cooper Ornithological Society, 2009.

Habitat and nesting biology of Mountain Plovers in Wyoming

USGS Publications Warehouse

Plumb, R.E.; Anderson, S.H.; Knopf, F.L.

2005-01-01

Although previous research has considered habitat associations and breeding biology of Mountain Plovers in Wyoming at discrete sites, no study has considered these attributes at a statewide scale. We located 55 Mountain Plover nests in 6 counties across Wyoming during 2002 and 2003. Nests occurred in 2 general habitat types: grassland and desert-shrub. Mean estimated hatch date was 26 June (n = 31) in 2002 and 21 June (n = 24) in 2003. Mean hatch date was not related to latitude or elevation. Hatch success of nests was inferred in 2003 by the presence of eggshell fragments in the nest scrape. Eggs in 14 of 22 (64%) known-fate nests hatched. All grassland sites and 90% of desert sites were host to ungulate grazers, although prairie dogs were absent at 64% of nest sites. Nest plots had less grass coverage and reduced grass height compared with random plots. More than 50% of nests occurred on elevated plateaus. The Mountain Plover's tendency to nest on arid, elevated plateaus further substantiates claims that the bird is also a disturbed-prairie species.

Disentangling the diversity of arboreal ant communities in tropical forest trees.

PubMed

Klimes, Petr; Fibich, Pavel; Idigel, Cliffson; Rimandai, Maling

2015-01-01

Tropical canopies are known for their high abundance and diversity of ants. However, the factors which enable coexistence of so many species in trees, and in particular, the role of foragers in determining local diversity, are not well understood. We censused nesting and foraging arboreal ant communities in two 0.32 ha plots of primary and secondary lowland rainforest in New Guinea and explored their species diversity and composition. Null models were used to test if the records of species foraging (but not nesting) in a tree were dependent on the spatial distribution of nests in surrounding trees. In total, 102 ant species from 389 trees occurred in the primary plot compared with only 50 species from 295 trees in the secondary forest plot. However, there was only a small difference in mean ant richness per tree between primary and secondary forest (3.8 and 3.3 sp. respectively) and considerably lower richness per tree was found only when nests were considered (1.5 sp. in both forests). About half of foraging individuals collected in a tree belonged to species which were not nesting in that tree. Null models showed that the ants foraging but not nesting in a tree are more likely to nest in nearby trees than would be expected at random. The effects of both forest stage and tree size traits were similar regardless of whether only foragers, only nests, or both datasets combined were considered. However, relative abundance distributions of species differed between foraging and nesting communities. The primary forest plot was dominated by native ant species, whereas invasive species were common in secondary forest. This study demonstrates the high contribution of foragers to arboreal ant diversity, indicating an important role of connectivity between trees, and also highlights the importance of primary vegetation for the conservation of native ant communities.

Disentangling the Diversity of Arboreal Ant Communities in Tropical Forest Trees

PubMed Central

Klimes, Petr; Fibich, Pavel; Idigel, Cliffson; Rimandai, Maling

2015-01-01

Tropical canopies are known for their high abundance and diversity of ants. However, the factors which enable coexistence of so many species in trees, and in particular, the role of foragers in determining local diversity, are not well understood. We censused nesting and foraging arboreal ant communities in two 0.32 ha plots of primary and secondary lowland rainforest in New Guinea and explored their species diversity and composition. Null models were used to test if the records of species foraging (but not nesting) in a tree were dependent on the spatial distribution of nests in surrounding trees. In total, 102 ant species from 389 trees occurred in the primary plot compared with only 50 species from 295 trees in the secondary forest plot. However, there was only a small difference in mean ant richness per tree between primary and secondary forest (3.8 and 3.3 sp. respectively) and considerably lower richness per tree was found only when nests were considered (1.5 sp. in both forests). About half of foraging individuals collected in a tree belonged to species which were not nesting in that tree. Null models showed that the ants foraging but not nesting in a tree are more likely to nest in nearby trees than would be expected at random. The effects of both forest stage and tree size traits were similar regardless of whether only foragers, only nests, or both datasets combined were considered. However, relative abundance distributions of species differed between foraging and nesting communities. The primary forest plot was dominated by native ant species, whereas invasive species were common in secondary forest. This study demonstrates the high contribution of foragers to arboreal ant diversity, indicating an important role of connectivity between trees, and also highlights the importance of primary vegetation for the conservation of native ant communities. PMID:25714831

The fundamentals of average local variance--Part II: Sampling simple regular patterns with optical imagery.

PubMed

Bøcher, Peder Klith; McCloy, Keith R

2006-02-01

In this investigation, the characteristics of the average local variance (ALV) function is investigated through the acquisition of images at different spatial resolutions of constructed scenes of regular patterns of black and white squares. It is shown that the ALV plot consistently peaks at a spatial resolution in which the pixels has a size corresponding to half the distance between scene objects, and that, under very specific conditions, it also peaks at a spatial resolution in which the pixel size corresponds to the whole distance between scene objects. It is argued that the peak at object distance when present is an expression of the Nyquist sample rate. The presence of this peak is, hence, shown to be a function of the matching between the phase of the scene pattern and the phase of the sample grid, i.e., the image. When these phases match, a clear and distinct peak is produced on the ALV plot. The fact that the peak at half the distance consistently occurs in the ALV plot is linked to the circumstance that the sampling interval (distance between pixels) and the extent of the sampling unit (size of pixels) are equal. Hence, at twice the Nyquist sampling rate, each fundamental period of the pattern is covered by four pixels; therefore, at least one pixel is always completely embedded within one pattern element, regardless of sample scene phase. If the objects in the scene are scattered with a distance larger than their extent, the peak will be related to the size by a factor larger than 1/2. This is suggested to be the explanation to the results presented by others that the ALV plot is related to scene-object size by a factor of 1/2-3/4.

The Need of Nested Grids for Aerial and Satellite Images and Digital Elevation Models

NASA Astrophysics Data System (ADS)

Villa, G.; Mas, S.; Fernández-Villarino, X.; Martínez-Luceño, J.; Ojeda, J. C.; Pérez-Martín, B.; Tejeiro, J. A.; García-González, C.; López-Romero, E.; Soteres, C.

2016-06-01

Usual workflows for production, archiving, dissemination and use of Earth observation images (both aerial and from remote sensing satellites) pose big interoperability problems, as for example: non-alignment of pixels at the different levels of the pyramids that makes it impossible to overlay, compare and mosaic different orthoimages, without resampling them and the need to apply multiple resamplings and compression-decompression cycles. These problems cause great inefficiencies in production, dissemination through web services and processing in "Big Data" environments. Most of them can be avoided, or at least greatly reduced, with the use of a common "nested grid" for mutiresolution production, archiving, dissemination and exploitation of orthoimagery, digital elevation models and other raster data. "Nested grids" are space allocation schemas that organize image footprints, pixel sizes and pixel positions at all pyramid levels, in order to achieve coherent and consistent multiresolution coverage of a whole working area. A "nested grid" must be complemented by an appropriate "tiling schema", ideally based on the "quad-tree" concept. In the last years a "de facto standard" grid and Tiling Schema has emerged and has been adopted by virtually all major geospatial data providers. It has also been adopted by OGC in its "WMTS Simple Profile" standard. In this paper we explain how the adequate use of this tiling schema as common nested grid for orthoimagery, DEMs and other types of raster data constitutes the most practical solution to most of the interoperability problems of these types of data.

Monolithic active pixel radiation detector with shielding techniques

DOEpatents

Deptuch, Grzegorz W.

2018-03-20

A monolithic active pixel radiation detector including a method of fabricating thereof. The disclosed radiation detector can include a substrate comprising a silicon layer upon which electronics are configured. A plurality of channels can be formed on the silicon layer, wherein the plurality of channels are connected to sources of signals located in a bulk part of the substrate, and wherein the signals flow through electrically conducting vias established in an isolation oxide on the substrate. One or more nested wells can be configured from the substrate, wherein the nested wells assist in collecting charge carriers released in interaction with radiation and wherein the nested wells further separate the electronics from the sensing portion of the detector substrate. The detector can also be configured according to a thick SOA method of fabrication.

Monolithic active pixel radiation detector with shielding techniques

DOEpatents

Deptuch, Grzegorz W.

2016-09-06

A monolithic active pixel radiation detector including a method of fabricating thereof. The disclosed radiation detector can include a substrate comprising a silicon layer upon which electronics are configured. A plurality of channels can be formed on the silicon layer, wherein the plurality of channels are connected to sources of signals located in a bulk part of the substrate, and wherein the signals flow through electrically conducting vias established in an isolation oxide on the substrate. One or more nested wells can be configured from the substrate, wherein the nested wells assist in collecting charge carriers released in interaction with radiation and wherein the nested wells further separate the electronics from the sensing portion of the detector substrate. The detector can also be configured according to a thick SOA method of fabrication.

Predicting nest success from habitat features in aspen forests of the central Rocky Mountains

Treesearch

Heather M. Struempf; Deborah M. Finch; Gregory Hayward; Stanley Anderson

2001-01-01

We collected nesting data on bird use of aspen stands in the Routt and Medicine Bow National Forests between 1987 and 1989. We found active nest sites of 28 species of small nongame birds on nine study plots in undisturbed aspen forests. We compared logistic regression models predicting nest success (at least one nestling) from nest-site or stand-level habitat...

SMARTINIT DOWNSCALING GRAPHICS

Science.gov Websites

Month: Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec Day: 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 first prev next last SMARTINIT Verification NAM VS NEST Graphics MMB web site Model Type: PROD vs PARA DNG Plot Type: Comparison maps Difference plots Region: CONUS Nest 2.5 km South West U.S. New York, NY

Lack of nest site limitation in a cavity-nesting bird community

Treesearch

Jeffry R. Waters; Barry R. Noon; Jared Verner

1990-01-01

We examined the relationship between nest site availability and density of secondary cavitynesting birds by blocking cavities in an oak-pine (Quercus spp.-Pinus sp. ) woodland. In 1986 and 1987we blocked 67 and 106 cavities, respectively, on a 37-ha plot. The combined density of secondary cavity-nesting birds did not decline...

Remote sensing with simulated unmanned aircraft imagery for precision agriculture applications

USGS Publications Warehouse

Hunt, E. Raymond; Daughtry, Craig S.T.; Mirsky, Steven B.; Hively, W. Dean

2014-01-01

An important application of unmanned aircraft systems (UAS) may be remote-sensing for precision agriculture, because of its ability to acquire images with very small pixel sizes from low altitude flights. The objective of this study was to compare information obtained from two different pixel sizes, one about a meter (the size of a small vegetation plot) and one about a millimeter. Cereal rye (Secale cereale) was planted at the Beltsville Agricultural Research Center for a winter cover crop with fall and spring fertilizer applications, which produced differences in biomass and leaf chlorophyll content. UAS imagery was simulated by placing a Fuji IS-Pro UVIR digital camera at 3-m height looking nadir. An external UV-IR cut filter was used to acquire true-color images; an external red cut filter was used to obtain color-infrared-like images with bands at near-infrared, green, and blue wavelengths. Plot-scale Green Normalized Difference Vegetation Index was correlated with dry aboveground biomass ( ${mbi {r}} = 0.58$ ), whereas the Triangular Greenness Index (TGI) was not correlated with chlorophyll content. We used the SamplePoint program to select 100 pixels systematically; we visually identified the cover type and acquired the digital numbers. The number of rye pixels in each image was better correlated with biomass ( ${mbi {r}} = 0.73$ ), and the average TGI from only leaf pixels was negatively correlated with chlorophyll content ( ${mbi {r}} = -0.72$ ). Thus, better information for crop requirements may be obtained using very small pixel sizes, but new algorithms based on computer vision are needed for analysis. It may not be necessary to geospatially register large numbers of photographs with very small pixel sizes. Instead, images could be analyzed as single plots along field transects.

Big Bend Dam/Lake Sharpe Master Plan, Missouri River, South Dakota: Update of Design Memorandum MB-90

DTIC Science & Technology

2003-10-01

supplement the existing food sources and nesting habitat for upland species . Cottonwood, Russian olive, green ash and willow trees , and chokecherry and...establishment of dense nesting cover, food plots, and trees for upland game species . Food plots of corn, milo, millet, sunflower, and cane and...habitat for upland and big game species . Development Needs. • Plant trees and shrubs to increase woody vegetation and to improve cover; and

Using variance components to estimate power in a hierarchically nested sampling design improving monitoring of larval Devils Hole pupfish

USGS Publications Warehouse

Dzul, Maria C.; Dixon, Philip M.; Quist, Michael C.; Dinsomore, Stephen J.; Bower, Michael R.; Wilson, Kevin P.; Gaines, D. Bailey

2013-01-01

We used variance components to assess allocation of sampling effort in a hierarchically nested sampling design for ongoing monitoring of early life history stages of the federally endangered Devils Hole pupfish (DHP) (Cyprinodon diabolis). Sampling design for larval DHP included surveys (5 days each spring 2007–2009), events, and plots. Each survey was comprised of three counting events, where DHP larvae on nine plots were counted plot by plot. Statistical analysis of larval abundance included three components: (1) evaluation of power from various sample size combinations, (2) comparison of power in fixed and random plot designs, and (3) assessment of yearly differences in the power of the survey. Results indicated that increasing the sample size at the lowest level of sampling represented the most realistic option to increase the survey's power, fixed plot designs had greater power than random plot designs, and the power of the larval survey varied by year. This study provides an example of how monitoring efforts may benefit from coupling variance components estimation with power analysis to assess sampling design.

User's guide for Northeast Stand Exam Program (NEST Version 2.1).

Treesearch

Thomas M. Schuler; Brian T. Simpson

1991-01-01

Explains the Northeast Stand Exam (NEST Version 2.1) program. The NEST program was designed for use on the Polycorder 600 Series electronic portable data recorder to record data collected from the standard permanent plot as described by the Stand Culture and Stand Establishment Working Groups of the Northeastern Forest Experiment Station.

Plots, pixels, and partnerships: prospects for mapping, monitoring and modeling biodiversity.

Treesearch

H. Gyde Lund; Victor A. Rudis; Kenneth W. Stolte

1998-01-01

Many biodiversity inventories are conducted in relatively small areas, yet information is needed at the national, regional, and global levels.Most nations have forest inventory plot networks.While forest inventories may not contain the detailed species information that biodiversity inventories do, the forest inventory plot networks do represent large areas.Linkages...

Development of a Machine Vision Method for the Monitoring of Laying Hens and Detection of Multiple Nest Occupations.

PubMed

Zaninelli, Mauro; Redaelli, Veronica; Luzi, Fabio; Mitchell, Malcolm; Bontempo, Valentino; Cattaneo, Donata; Dell'Orto, Vittorio; Savoini, Giovanni

2018-01-05

Free range systems can improve the welfare of laying hens. However, the access to environmental resources can be partially limited by social interactions, feeding of hens, and productivity, can be not stable and damaging behaviors, or negative events, can be observed more frequently than in conventional housing systems. In order to reach a real improvement of the hens' welfare the study of their laying performances and behaviors is necessary. With this purpose, many systems have been developed. However, most of them do not detect a multiple occupation of the nest negatively affecting the accuracy of data collected. To overcome this issue, a new "nest-usage-sensor" was developed and tested. It was based on the evaluation of thermografic images, as acquired by a thermo-camera, and the performing of patter recognitions on images acquired from the nest interior. The sensor was setup with a "Multiple Nest Occupation Threshold" of 796 colored pixels and a template of triangular shape and sizes of 43 × 33 pixels (high per base). It was tested through an experimental nesting system where 10 hens were reared for a month. Results showed that the evaluation of thermografic images could increase the detection performance of a multiple occupation of the nest and to apply an image pattern recognition technique could allow for counting the number of hens in the nest in case of a multiple occupation. As a consequence, the accuracy of data collected in studies on laying performances and behaviors of hens, reared in a free-range housing system, could result to be improved.

Green-tailed Towhee response to prescribed fire in montane shrubland

USGS Publications Warehouse

Jehle, G.; Savidge, J.A.; Kotliar, N.B.

2006-01-01

Fire alters the structure and composition of shrublands and affects habitat quality for the associated avifauna. Because shrubland ecosystems have been greatly reduced from their original extent in western North America and fire is increasingly being used to manage these landscapes, a better understanding of how fire affects the associated vegetation and wildlife is imperative. We evaluated the response of Green-tailed Towhees (Pipilo chlorurus) to prescribed fire in the montane shrublands of Rocky Mountain National Park, Colorado during 2002 and 2003. Three to five years following prescribed burning, Green-tailed Towhee density and shrub cover were generally higher in unburned areas. Nests (n = 179) were located in unburned vegetation; within burned sites, all nests were in remnant patches. Green-tailed Towhee nest survival was 57% (95% CI = 49%-65%) across the two years of the study. More than half of the nests were in common juniper (Juniperus communis) shrubs, and nest survival was higher for nests in junipers than those in other shrub species. Daily nest survival rates were lower at the site with the highest density of towhees and declined over the breeding season. With regard to shrub cover, opposite trends were observed for nest-site selection and nest survival: nest plots had greater shrub cover than non-nest plots, but nest survival decreased with increasing shrub cover. Because shrub cover affects towhee density and nest survival in conflicting ways, fire management at Rocky Mountain National Park alters both habitat availability and suitability for Green-tailed Towhees. ?? The Cooper Ornithological Society 2006.

Effects of winter marsh burning on abundance and nesting activity of Louisiana seaside sparrows in the Gulf Coast Chenier Plain

USGS Publications Warehouse

Gabrey, S.W.; Afton, A.D.

2000-01-01

Louisiana Seaside Sparrows (Ammodramus maritimus fisheri) breed and winter exclusively in brackish and saline marshes along the northern Gulf of Mexico. Many Gulf Coast marshes, particularly in the Chenier Plain of southwestern Louisiana and southeastern Texas, are burned intentionally in fall or winter as part of waterfowl management programs. Fire reportedly has negatively affected two Seaside Sparrow subspecies (A. m. nigrescens and A. m. mirabilis) in Florida, but there is no published information regarding effects of fire on A. m. fisheri. We compared abundance of territorial male Louisiana Seaside Sparrows, number of nesting activity indicators, and vegetation structure in paired burned and unburned plots in Chenier Plain marshes in southwestern Louisiana during the 1996 breeding season (April-July) before experimental winter burns (January 1997) and again during two breeding seasons post-burn (1997-1998). We found that abundance of male sparrows decreased in burned plots during the first breeding season post-burn, but was higher than that of unburned plots during the second breeding season post-burn. Indicators of nesting activity showed a similar but non-significant pattern in response to burning. Sparrow abundance and nesting activity seemingly are linked to dead vegetation cover, which was lower in burned plots during the first breeding season post-burn, but did not differ from that in unburned plots during the second breeding season post-burn. We recommend that marsh management plans in the Gulf Coast Chenier Plain integrate waterfowl and Seaside Sparrow management by maintaining a mosaic of burned and unburned marshes and allowing vegetation to recover for at least two growing seasons before reburning a marsh.

Development of a Machine Vision Method for the Monitoring of Laying Hens and Detection of Multiple Nest Occupations

PubMed Central

Redaelli, Veronica; Luzi, Fabio; Mitchell, Malcolm; Bontempo, Valentino; Cattaneo, Donata; Dell’Orto, Vittorio; Savoini, Giovanni

2018-01-01

Free range systems can improve the welfare of laying hens. However, the access to environmental resources can be partially limited by social interactions, feeding of hens, and productivity, can be not stable and damaging behaviors, or negative events, can be observed more frequently than in conventional housing systems. In order to reach a real improvement of the hens’ welfare the study of their laying performances and behaviors is necessary. With this purpose, many systems have been developed. However, most of them do not detect a multiple occupation of the nest negatively affecting the accuracy of data collected. To overcome this issue, a new “nest-usage-sensor” was developed and tested. It was based on the evaluation of thermografic images, as acquired by a thermo-camera, and the performing of patter recognitions on images acquired from the nest interior. The sensor was setup with a “Multiple Nest Occupation Threshold” of 796 colored pixels and a template of triangular shape and sizes of 43 × 33 pixels (high per base). It was tested through an experimental nesting system where 10 hens were reared for a month. Results showed that the evaluation of thermografic images could increase the detection performance of a multiple occupation of the nest and to apply an image pattern recognition technique could allow for counting the number of hens in the nest in case of a multiple occupation. As a consequence, the accuracy of data collected in studies on laying performances and behaviors of hens, reared in a free-range housing system, could result to be improved. PMID:29303981

The Effect of Nest Box Distribution on Sustainable Propagation of Osmia lignaria (Hymenoptera: Megachilidae) in Commercial Tart Cherry Orchards

PubMed Central

Pitts-Singer, T. L.

2017-01-01

The blue orchard bee, Osmia lignaria (Say), is a solitary bee that is an excellent pollinator of tree fruit orchards. Due to the annual rising costs of honey bee hive rentals, many orchardists are eager to develop management tools and practices to support O. lignaria as an alternative pollinator. Establishing O. lignaria pollination as a sustainable industry requires careful consideration of both bee and orchard management. Here, we test the effect of artificial nest box distribution on in-orchard propagation of O. lignaria in Utah commercial tart cherry orchards. Two nest box distributions were compared across three paired, 1.2-ha plots. One distribution, traditionally employed by O. lignaria consultants, included a centrally located tote for mass-nesting with smaller, surrounding ‘satellite’ nest boxes at orchard margins. The other distribution was composed of smaller, more equally distributed nest boxes throughout the 1.2-ha plots. Significantly higher propagation of O. lignaria was observed in the latter nest box distribution, although all treatments resulted in bee return exceeding the number of bees initially released. These findings provide support for the use of O. lignaria in tart cherry orchards, and demonstrate how simple changes to bee set-up and management can influence propagation efforts. PMID:28365763

Landscape patterns around Northern Spotted Owl (Strix occidentalis caurina) nest sites in Oregon's central Coast Ranges

Treesearch

J. P. Perkins; J. A. Thrailkill; W. J. Ripple; K. T. Hershey

1997-01-01

We investigated landscape characteristics around 41 Northern Spotted Owl (Strix occidentalis caurina) nest sites to assess habitat proportions and patterns on this highly fragmented landscape in the central Coast Ranges of Oregon. We compared the proportion of seven forest cover-types between nest sites and random sites at plot sizes of 112 ha, 456...

Detection of diluted contaminants on chicken carcasses using a two-dimensional scatter plot based on a two-dimensional hyperspectral correlation spectrum.

PubMed

Wu, Wei; Chen, Gui-Yun; Wu, Ming-Qing; Yu, Zhen-Wei; Chen, Kun-Jie

2017-03-20

A two-dimensional (2D) scatter plot method based on the 2D hyperspectral correlation spectrum is proposed to detect diluted blood, bile, and feces from the cecum and duodenum on chicken carcasses. First, from the collected hyperspectral data, a set of uncontaminated regions of interest (ROIs) and four sets of contaminated ROIs were selected, whose average spectra were treated as the original spectrum and influenced spectra, respectively. Then, the difference spectra were obtained and used to conduct correlation analysis, from which the 2D hyperspectral correlation spectrum was constructed using the analogy method of 2D IR correlation spectroscopy. Two maximum auto-peaks and a pair of cross peaks appeared at 656 and 474 nm. Therefore, 656 and 474 nm were selected as the characteristic bands because they were most sensitive to the spectral change induced by the contaminants. The 2D scatter plots of the contaminants, clean skin, and background in the 474- and 656-nm space were used to distinguish the contaminants from the clean skin and background. The threshold values of the 474- and 656-nm bands were determined by receiver operating characteristic (ROC) analysis. According to the ROC results, a pixel whose relative reflectance at 656 nm was greater than 0.5 and relative reflectance at 474 nm was lower than 0.3 was judged as a contaminated pixel. A region with more than 50 pixels identified was marked in the detection graph. This detection method achieved a recognition rate of up to 95.03% at the region level and 31.84% at the pixel level. The false-positive rate was only 0.82% at the pixel level. The results of this study confirm that the 2D scatter plot method based on the 2D hyperspectral correlation spectrum is an effective method for detecting diluted contaminants on chicken carcasses.

Pre- and post-experimental manipulation assessments confirm the increase in number of birds due to the addition of nest boxes.

PubMed

Cuatianquiz Lima, Cecilia; Macías Garcia, Constantino

2016-01-01

Secondary cavity nesting (SCN) birds breed in holes that they do not excavate themselves. This is possible where there are large trees whose size and age permit the digging of holes by primary excavators and only rarely happens in forest plantations, where we expected a deficit of both breeding holes and SCN species. We assessed whether the availability of tree cavities influenced the number of SCNs in two temperate forest types, and evaluated the change in number of SCNs after adding nest boxes. First, we counted all cavities within each of our 25-m radius sampling points in mature and young forest plots during 2009. We then added nest boxes at standardised locations during 2010 and 2011 and conducted fortnightly bird counts (January-October 2009-2011). In 2011 we added two extra plots of each forest type, where we also conducted bird counts. Prior to adding nest boxes, counts revealed more SCNs in mature than in young forest. Following the addition of nest boxes, the number of SCNs increased significantly in the points with nest boxes in both types of forest. Counts in 2011 confirmed the increase in number of birds due to the addition of nest boxes. Given the likely benefits associated with a richer bird community we propose that, as is routinely done in some countries, forest management programs preserve old tree stumps and add nest boxes to forest plantations in order to increase bird numbers and bird community diversity.

Local individual preferences for nest materials in a passerine bird.

PubMed

Mennerat, Adèle; Perret, Philippe; Lambrechts, Marcel M

2009-01-01

Variation in the behavioural repertoire of animals is acquired by learning in a range of animal species. In nest-building birds, the assemblage of nest materials in an appropriate structure is often typical of a bird genus or species. Yet plasticity in the selection of nest materials may be beneficial because the nature and abundance of nest materials vary across habitats. Such plasticity can be learned, either individually or socially. In Corsican populations of blue tits Cyanistes caeruleus, females regularly add in their nests fragments of several species of aromatic plants during the whole breeding period. The selected plants represent a small fraction of the species present in the environment and have positive effects on nestlings. We investigated spatiotemporal variations of this behaviour to test whether the aromatic plant species composition in nests depends on 1) plant availability in territories, 2) female experience or 3) female identity. Our results indicate that territory plays a very marginal role in the aromatic plant species composition of nests. Female experience is not related to a change in nest plant composition. Actually, this composition clearly depends on female identity, i.e. results from individual preferences which, furthermore, are repeatable both within and across years. A puzzling fact is the strong difference in plant species composition of nests across distinct study plots. This study demonstrates that plant species composition of nests results from individual preferences that are homogeneous within study plots. We propose several hypotheses to interpret this pattern of spatial variation before discussing them in the light of preliminary results. As a conclusion, we cannot exclude the possibility of social transmission of individual preferences for aromatic plants. This is an exciting perspective for further work in birds, where nest construction behaviour has classically been considered as a stereotypic behaviour.

Double-Crested Cormorant ( Phalacrocorax auritus) Nesting Effects on Understory Composition and Diversity on Island Ecosystems in Lake Erie

NASA Astrophysics Data System (ADS)

McGrath, Darby M.; Murphy, Stephen D.

2012-08-01

The context for this study is the management concerns over the severity and extent of the impact of cormorants on island flora in the recent past on Lake Erie islands. Accordingly, this study sought to quantify the nesting colonies' influence on coarse woody litter and how nest densities and litter depth may influence the herbaceous layer, the seed bank composition and viability across the extent of three Lake Erie islands. The data for this study were collected from 2004 to 2008 on East Sister Island and Middle Island using two main strategies. First, herbaceous layer surveys, cormorant nest counts, soil seed bank cores, and litter depth measurements were executed using a plotless-point quarter method to test island-wide impacts from nesting activities (data were also collected on a third island, West Sister Island as a reference for the other two islands). Secondly, a sub-sample of the entire plot set was examined in particularly high nesting density areas for two islands (Middle Island and East Sister Island). Kruskal-Wallis tests indicated that there are subtle changes in the herbaceous diversity (total, native and exotic) and seed bank composition across the islands. The sub sample set of the plots demonstrated that Phalacrocorax auritus nest density does influence litter depth, herbaceous species abundance and diversity. Cormorant nesting pressures are restricted to areas of high nesting pressures and competition. However, there remains a risk to the interior herbaceous layer of the island if the effects of nesting pressures at the edges advance inward from this perimeter.

Effects of fuel reduction treatments on avian nest density in the upper piedmont of South Carolina

Treesearch

E.S. Kilpatrick; J.D. Lanham; T.A. Waldrop

2010-01-01

The Fire and Fire Surrogate Study is a national study installed at 13 sites across the United States. One goal of the southeastern Piedmont FFS installation was to assess the effects of fuel reduction treatments such as prescribed burning and thinning on avian nest density. Nest searching and monitoring took place within twelve 10-hectare study plots during the...

Are there optimal densities for prairie birds?

USGS Publications Warehouse

Skagen, S.K.; Adams, A.A.Y.

2010-01-01

The major forces of food and predation shape fitness-enhancing decisions of birds at all stages of their life cycles. During the breeding season, birds can minimize nest loss due to predation by selecting sites with a lower probability of predation. To understand the environmental and social aspects and consequences of breedingsite selection in prairie birds, we explored variation in nest-survival patterns of the Lark Bunting (Calamospiza melanocorys) in the shortgrass prairie region of North America. Over four breeding seasons, we documented the survival of 405 nests, conducted 60 surveys to estimate bird densities, and measured several vegetative features to describe habitat structure in 24 randomly selected study plots. Nest survival varied with the buntings' density as described by a quadratic polynomial, increasing with density below 1.5 birds ha-1 and decreasing with density between 1.5 and 3 birds ha-1, suggesting that an optimal range of densities favors reproductive success of the Lark Bunting, which nests semi-colonially. Nest survival also increased with increasing vegetation structure of study plots and varied with age of the nest, increasing during early incubation and late in the nestling stage and declining slightly from mid-incubation to the middle of the nestling period. The existence of an optimal range of densities in this semi-colonial species can be elucidated by the "commodity-selection hypothesis" at low densities and density dependence at high densities. ?? The Cooper Ornithological Society 2010.

Upgrading the Arecibo Potassium Lidar Receiver for Meridional Wind Measurements

NASA Astrophysics Data System (ADS)

Piccone, A. N.; Lautenbach, J.

2017-12-01

Lidar can be used to measure a plethora of variables: temperature, density of metals, and wind. This REU project is focused on the set up of a semi steerable telescope that will allow the measurement of meridional wind in the mesosphere (80-105 km) with Arecibo Observatory's potassium resonance lidar. This includes the basic design concept of a steering system that is able to turn the telescope to a maximum of 40°, alignment of the mirror with the telescope frame to find the correct focusing, and the triggering and programming of a CCD camera. The CCD camera's purpose is twofold: looking though the telescope and matching the stars in the field of view with a star map to accurately calibrate the steering system and determining the laser beam properties and position. Using LabVIEW, the frames from the CCD camera can be analyzed to identify the most intense pixel in the image (and therefore the brightest point in the laser beam or stars) by plotting average pixel values per row and column and locating the peaks of these plots. The location of this pixel can then be plotted, determining the jitter in the laser and position within the field of view of the telescope.

Pre- and post-experimental manipulation assessments confirm the increase in number of birds due to the addition of nest boxes

PubMed Central

Cuatianquiz Lima, Cecilia

2016-01-01

Secondary cavity nesting (SCN) birds breed in holes that they do not excavate themselves. This is possible where there are large trees whose size and age permit the digging of holes by primary excavators and only rarely happens in forest plantations, where we expected a deficit of both breeding holes and SCN species. We assessed whether the availability of tree cavities influenced the number of SCNs in two temperate forest types, and evaluated the change in number of SCNs after adding nest boxes. First, we counted all cavities within each of our 25-m radius sampling points in mature and young forest plots during 2009. We then added nest boxes at standardised locations during 2010 and 2011 and conducted fortnightly bird counts (January–October 2009–2011). In 2011 we added two extra plots of each forest type, where we also conducted bird counts. Prior to adding nest boxes, counts revealed more SCNs in mature than in young forest. Following the addition of nest boxes, the number of SCNs increased significantly in the points with nest boxes in both types of forest. Counts in 2011 confirmed the increase in number of birds due to the addition of nest boxes. Given the likely benefits associated with a richer bird community we propose that, as is routinely done in some countries, forest management programs preserve old tree stumps and add nest boxes to forest plantations in order to increase bird numbers and bird community diversity. PMID:26998410

Sub-pixel image classification for forest types in East Texas

NASA Astrophysics Data System (ADS)

Westbrook, Joey

Sub-pixel classification is the extraction of information about the proportion of individual materials of interest within a pixel. Landcover classification at the sub-pixel scale provides more discrimination than traditional per-pixel multispectral classifiers for pixels where the material of interest is mixed with other materials. It allows for the un-mixing of pixels to show the proportion of each material of interest. The materials of interest for this study are pine, hardwood, mixed forest and non-forest. The goal of this project was to perform a sub-pixel classification, which allows a pixel to have multiple labels, and compare the result to a traditional supervised classification, which allows a pixel to have only one label. The satellite image used was a Landsat 5 Thematic Mapper (TM) scene of the Stephen F. Austin Experimental Forest in Nacogdoches County, Texas and the four cover type classes are pine, hardwood, mixed forest and non-forest. Once classified, a multi-layer raster datasets was created that comprised four raster layers where each layer showed the percentage of that cover type within the pixel area. Percentage cover type maps were then produced and the accuracy of each was assessed using a fuzzy error matrix for the sub-pixel classifications, and the results were compared to the supervised classification in which a traditional error matrix was used. The overall accuracy of the sub-pixel classification using the aerial photo for both training and reference data had the highest (65% overall) out of the three sub-pixel classifications. This was understandable because the analyst can visually observe the cover types actually on the ground for training data and reference data, whereas using the FIA (Forest Inventory and Analysis) plot data, the analyst must assume that an entire pixel contains the exact percentage of a cover type found in a plot. An increase in accuracy was found after reclassifying each sub-pixel classification from nine classes with 10 percent interval each to five classes with 20 percent interval each. When compared to the supervised classification which has a satisfactory overall accuracy of 90%, none of the sub-pixel classification achieved the same level. However, since traditional per-pixel classifiers assign only one label to pixels throughout the landscape while sub-pixel classifications assign multiple labels to each pixel, the traditional 85% accuracy of acceptance for pixel-based classifications should not apply to sub-pixel classifications. More research is needed in order to define the level of accuracy that is deemed acceptable for sub-pixel classifications.

Local Individual Preferences for Nest Materials in a Passerine Bird

PubMed Central

Mennerat, Adèle; Perret, Philippe; Lambrechts, Marcel M.

2009-01-01

Background Variation in the behavioural repertoire of animals is acquired by learning in a range of animal species. In nest-building birds, the assemblage of nest materials in an appropriate structure is often typical of a bird genus or species. Yet plasticity in the selection of nest materials may be beneficial because the nature and abundance of nest materials vary across habitats. Such plasticity can be learned, either individually or socially. In Corsican populations of blue tits Cyanistes caeruleus, females regularly add in their nests fragments of several species of aromatic plants during the whole breeding period. The selected plants represent a small fraction of the species present in the environment and have positive effects on nestlings. Methodology/Principal Findings We investigated spatiotemporal variations of this behaviour to test whether the aromatic plant species composition in nests depends on 1) plant availability in territories, 2) female experience or 3) female identity. Our results indicate that territory plays a very marginal role in the aromatic plant species composition of nests. Female experience is not related to a change in nest plant composition. Actually, this composition clearly depends on female identity, i.e. results from individual preferences which, furthermore, are repeatable both within and across years. A puzzling fact is the strong difference in plant species composition of nests across distinct study plots. Conclusions/Significance This study demonstrates that plant species composition of nests results from individual preferences that are homogeneous within study plots. We propose several hypotheses to interpret this pattern of spatial variation before discussing them in the light of preliminary results. As a conclusion, we cannot exclude the possibility of social transmission of individual preferences for aromatic plants. This is an exciting perspective for further work in birds, where nest construction behaviour has classically been considered as a stereotypic behaviour. PMID:19337365

Estimating Mixed Broadleaves Forest Stand Volume Using Dsm Extracted from Digital Aerial Images

NASA Astrophysics Data System (ADS)

Sohrabi, H.

2012-07-01

In mixed old growth broadleaves of Hyrcanian forests, it is difficult to estimate stand volume at plot level by remotely sensed data while LiDar data is absent. In this paper, a new approach has been proposed and tested for estimating stand forest volume. The approach is based on this idea that forest volume can be estimated by variation of trees height at plots. In the other word, the more the height variation in plot, the more the stand volume would be expected. For testing this idea, 120 circular 0.1 ha sample plots with systematic random design has been collected in Tonekaon forest located in Hyrcanian zone. Digital surface model (DSM) measure the height values of the first surface on the ground including terrain features, trees, building etc, which provides a topographic model of the earth's surface. The DSMs have been extracted automatically from aerial UltraCamD images so that ground pixel size for extracted DSM varied from 1 to 10 m size by 1m span. DSMs were checked manually for probable errors. Corresponded to ground samples, standard deviation and range of DSM pixels have been calculated. For modeling, non-linear regression method was used. The results showed that standard deviation of plot pixels with 5 m resolution was the most appropriate data for modeling. Relative bias and RMSE of estimation was 5.8 and 49.8 percent, respectively. Comparing to other approaches for estimating stand volume based on passive remote sensing data in mixed broadleaves forests, these results are more encouraging. One big problem in this method occurs when trees canopy cover is totally closed. In this situation, the standard deviation of height is low while stand volume is high. In future studies, applying forest stratification could be studied.

The Effect of Nest Box Distribution on Sustainable Propagation of Osmia lignaria (Hymenoptera: Megachilidae) in Commercial Tart Cherry Orchards.

PubMed

Boyle, N K; Pitts-Singer, T L

2017-01-01

The blue orchard bee, Osmia lignaria (Say), is a solitary bee that is an excellent pollinator of tree fruit orchards. Due to the annual rising costs of honey bee hive rentals, many orchardists are eager to develop management tools and practices to support O. lignaria as an alternative pollinator. Establishing O. lignaria pollination as a sustainable industry requires careful consideration of both bee and orchard management. Here, we test the effect of artificial nest box distribution on in-orchard propagation of O. lignaria in Utah commercial tart cherry orchards. Two nest box distributions were compared across three paired, 1.2-ha plots. One distribution, traditionally employed by O. lignaria consultants, included a centrally located tote for mass-nesting with smaller, surrounding 'satellite' nest boxes at orchard margins. The other distribution was composed of smaller, more equally distributed nest boxes throughout the 1.2-ha plots. Significantly higher propagation of O. lignaria was observed in the latter nest box distribution, although all treatments resulted in bee return exceeding the number of bees initially released. These findings provide support for the use of O. lignaria in tart cherry orchards, and demonstrate how simple changes to bee set-up and management can influence propagation efforts. Published by Oxford University Press on behalf of the Entomological Society of America 2017. This work is written by US Government employees and is in the public domain in the US.

Hyperspectral Imagery Throughput and Fusion Evaluation over Compression and Interpolation

DTIC Science & Technology

2008-07-01

MSE ⎛ ⎞ = ⎜ ⎟ ⎝ ⎠ (17) The PSNR values and compression ratios are shown in Table 1 and a plot of PSNR against the bits per pixel ( bpp ) is shown...Ratio bpp 59.3 2.9:1 2.76 46.0 9.2:1 0.87 43.2 14.5:1 0.55 40.8 25.0:1 0.32 38.7 34.6:1 0.23 35.5 62.1:1 0.13 Figure 11. PSNR vs. bits per...and a plot of PSNR against the bits per pixel ( bpp ) is shown in Figure 13. The 3D DCT compression yielded better results than the baseline JPEG

A survey of nested grid techniques and their potential for use within the MASS weather prediction model

NASA Technical Reports Server (NTRS)

Koch, Steven E.; Mcqueen, Jeffery T.

1987-01-01

A survey of various one- and two-way interactive nested grid techniques used in hydrostatic numerical weather prediction models is presented and the advantages and disadvantages of each method are discussed. The techniques for specifying the lateral boundary conditions for each nested grid scheme are described in detail. Averaging and interpolation techniques used when applying the coarse mesh grid (CMG) and fine mesh grid (FMG) interface conditions during two-way nesting are discussed separately. The survey shows that errors are commonly generated at the boundary between the CMG and FMG due to boundary formulation or specification discrepancies. Methods used to control this noise include application of smoothers, enhanced diffusion, or damping-type time integration schemes to model variables. The results from this survey provide the information needed to decide which one-way and two-way nested grid schemes merit future testing with the Mesoscale Atmospheric Simulation System (MASS) model. An analytically specified baroclinic wave will be used to conduct systematic tests of the chosen schemes since this will allow for objective determination of the interfacial noise in the kind of meteorological setting for which MASS is designed. Sample diagnostic plots from initial tests using the analytic wave are presented to illustrate how the model-generated noise is ascertained. These plots will be used to compare the accuracy of the various nesting schemes when incorporated into the MASS model.

Nest survival modelling using a multi-species approach in forests managed for timber and biofuel feedstock

USGS Publications Warehouse

Loman, Zachary G.; Monroe, Adrian; Riffell, Samuel K.; Miller, Darren A.; Vilella, Francisco; Wheat, Bradley R.; Rush, Scott A.; Martin, James A.

2018-01-01

Switchgrass (Panicum virgatum) intercropping is a novel forest management practice for biomass production intended to generate cellulosic feedstocks within intensively managed loblolly pine‐dominated landscapes. These pine plantations are important for early‐successional bird species, as short rotation times continually maintain early‐successional habitat. We tested the efficacy of using community models compared to individual surrogate species models in understanding influences on nest survival. We analysed nest data to test for differences in habitat use for 14 bird species in plots managed for switchgrass intercropping and controls within loblolly pine (Pinus taeda) plantations in Mississippi, USA.We adapted hierarchical models using hyper‐parameters to incorporate information from both common and rare species to understand community‐level nest survival. This approach incorporates rare species that are often discarded due to low sample sizes, but can inform community‐level demographic parameter estimates. We illustrate use of this approach in generating both species‐level and community‐wide estimates of daily survival rates for songbird nests. We were able to include rare species with low sample size (minimum n = 5) to inform a hyper‐prior, allowing us to estimate effects of covariates on daily survival at the community level, then compare this with a single‐species approach using surrogate species. Using single‐species models, we were unable to generate estimates below a sample size of 21 nests per species.Community model species‐level survival and parameter estimates were similar to those generated by five single‐species models, with improved precision in community model parameters.Covariates of nest placement indicated that switchgrass at the nest site (<4 m) reduced daily nest survival, although intercropping at the forest stand level increased daily nest survival.Synthesis and applications. Community models represent a viable method for estimating community nest survival rates and effects of covariates while incorporating limited data for rarely detected species. Intercropping switchgrass in loblolly pine plantations slightly increased daily nest survival at the research plot scale (0.1 km2), although at a local scale (50 m2) switchgrass negatively influenced nest survival. A likely explanation is intercropping shifted community composition, favouring species with greater disturbance tolerance.

Multi-scale habitat selection in highly territorial bird species: Exploring the contribution of nest, territory and landscape levels to site choice in breeding rallids (Aves: Rallidae)

NASA Astrophysics Data System (ADS)

Jedlikowski, Jan; Chibowski, Piotr; Karasek, Tomasz; Brambilla, Mattia

2016-05-01

Habitat selection often involves choices made at different spatial scales, but the underlying mechanisms are still poorly understood, and studies that investigate the relative importance of individual scales are rare. We investigated the effect of three spatial scales (landscape, territory, nest-site) on the occurrence pattern of little crake Zapornia parva and water rail Rallus aquaticus at 74 ponds in the Masurian Lakeland, Poland. Habitat structure, food abundance and water chemical parameters were measured at nests and random points within landscape plots (from 300-m to 50-m radius), territory (14-m) and nest-site plots (3-m). Regression analyses suggested that the most relevant scale was territory level, followed by landscape, and finally by nest-site for both species. Variation partitioning confirmed this pattern for water rail, but also highlighted the importance of nest-site (the level explaining the highest share of unique variation) for little crake. The most important variables determining the occurrence of both species were water body fragmentation (landscape), vegetation density (territory) and water depth (at territory level for little crake, and at nest-site level for water rail). Finally, for both species multi-scale models including factors from different levels were more parsimonious than single-scale ones, i.e. habitat selection was likely a multi-scale process. The importance of particular spatial scales seemed more related to life-history traits than to the extent of the scales considered. In the case of our study species, the territory level was highly important likely because both rallids have to obtain all the resources they need (nest site, food and mates) in relatively small areas, the multi-purpose territories they defend.

Monitoring planktivorous seabird populations: Validating surface counts of crevice-nesting auklets using mark-resight techniques

USGS Publications Warehouse

Sheffield, L.M.; Gall, Adrian E.; Roby, D.D.; Irons, D.B.; Dugger, K.M.

2006-01-01

Least Auklets (Aethia pusilla (Pallas, 1811)) are the most abundant species of seabird in the Bering Sea and offer a relatively efficient means of monitoring secondary productivity in the marine environment. Counting auklets on surface plots is the primary method used to track changes in numbers of these crevice-nesters, but counts can be highly variable and may not be representative of the number of nesting individuals. We compared average maximum counts of Least Auklets on surface plots with density estimates based on mark–resight data at a colony on St. Lawrence Island, Alaska, during 2001–2004. Estimates of breeding auklet abundance from mark–resight averaged 8 times greater than those from maximum surface counts. Our results also indicate that average maximum surface counts are poor indicators of breeding auklet abundance and do not vary consistently with auklet nesting density across the breeding colony. Estimates of Least Auklet abundance from mark–resight were sufficiently precise to meet management goals for tracking changes in seabird populations. We recommend establishing multiple permanent banding plots for mark–resight studies on colonies selected for intensive long-term monitoring. Mark–resight is more likely to detect biologically significant changes in size of auklet breeding colonies than traditional surface count techniques.

Nest success of snowy plovers (Charadrius nivosus) in the Southern high plains of Texas

USGS Publications Warehouse

Saalfeld, S.T.; Conway, Warren C.; Haukos, D.A.; Johnson, W.P.

2011-01-01

Snowy Plovers (Charadrius nivosus) nesting on edges of saline lakes within the Southern High Plains (SHP) of Texas are threatened by habitat degradation due to reduced artesian spring flow, making many saline lakes unsuitable for nesting and migrating shorebirds. Factors influencing nest success were evaluated, current nest success estimates in the SHP of Texas were compared to estimates obtained ten years prior, and causes and timing of nest failures determined. Overall, 215 nests were monitored from three saline lakes in 20082009, with nest success estimates from Program MARK ranging from 7-33% ( x??= 22%). The leading causes of nest failures were attributed to predation (40%) and weather (36%). Nest success was negatively influenced by number of plants within 707-cm 2 plot, positively influenced by percent surface water availability, and at one saline lake, negatively influenced by day during the nesting season (i.e., nest success declined later in the nesting season). When compared to estimates ten years prior (19981999), mean nest success has declined by 31%. If nesting Snowy Plovers continue to experience increased predation rates, decreased hydrological integrity, and habitat alterations, populations will continue to decline throughout this region.

Rapid classification of landsat TM imagery for phase 1 stratification using the automated NDVI threshold supervised classification (ANTSC) methodology

Treesearch

William H. Cooke; Dennis M. Jacobs

2002-01-01

FIA annual inventories require rapid updating of pixel-based Phase 1 estimates. Scientists at the Southern Research Station are developing an automated methodology that uses a Normalized Difference Vegetation Index (NDVI) for identifying and eliminating problem FIA plots from the analysis. Problem plots are those that have questionable land useiland cover information....

A comparison of FIA plot data derived from image pixels and image objects

Treesearch

Charles E. Werstak

2012-01-01

The use of Forest Inventory and Analysis (FIA) plot data for producing continuous and thematic maps of forest attributes (e.g., forest type, canopy cover, volume, and biomass) at the regional level from satellite imagery can be challenging due to differences in scale. Specifically, classification errors that may result from assumptions made between what the field data...

Nest Records of Wreathed Hornbill (Rhyticeros undulates) in Gunung Gentong Station, Mount Ungaran Central Java

NASA Astrophysics Data System (ADS)

Rahayuningsih, M.; Kartijomo, NE; Retnaningsih, A.; Munir, M.; Dahlan, J.

2017-04-01

The remaining forest of Mount Ungaran, Central Javais the suitable habitat of Wreathed Hornbill (Rhyticeros undulatus), especially for a nesting site. The objective of the study was to analyse the nest record and characteristics of habitat around the nest, especially in Gunung Gentong station. The research was conducted from 2010-2016 using exploration method. The methodhabitat profile of the vertical structure tree canopy was taken by plot size 60 × 20 m. Measurements were taken to the standing of vegetation, canopy closure, the direction of the canopy, height canopy, a former branch of the vegetation height, and stem diameter. The Result of the study showed that Gunung Gentong is one of the research station that we have been recorded for nesting site on 2010-2015. Atotal of the nest record on Gunung Genting station was 10 nests. Estimate the elevation of nest location between 939-1240 AMSL. The tree species that used for nesting was Syzygium glabatrum, Syzygium antisepticum, Ceratoxylon formosum, and Ficus sp

Shading and watering as a tool to mitigate the impacts of climate change in sea turtle nests.

PubMed

Hill, Jacob E; Paladino, Frank V; Spotila, James R; Tomillo, Pilar Santidrián

2015-01-01

Increasing sand temperatures resulting from climate change may negatively impact sea turtle nests by altering sex ratios and decreasing reproductive output. We analyzed the effect of nest shading and watering on sand temperatures as climate mitigation strategies in a beach hatchery at Playa Grande, Costa Rica. We set up plots and placed thermocouples at depths of 45 cm and 75 cm. Half of the plots were shaded and half were exposed to the sun. Within these exposure treatments, we applied three watering treatments over one month, replicating local climatic conditions experienced in this area. We also examined gravimetric water content of sand by collecting sand samples the day before watering began, the day after watering was complete, and one month after completion. Shading had the largest impact on sand temperature, followed by watering and depth. All watering treatments lowered sand temperature, but the effect varied with depth. Temperatures in plots that received water returned to control levels within 10 days after watering stopped. Water content increased at both depths in the two highest water treatments, and 30 days after the end of water application remained higher than plots with low water. While the impacts of watering on sand temperature dissipate rapidly after the end of application, the impacts on water content are much more lasting. Although less effective at lowering sand temperatures than shading, watering may benefit sea turtle clutches by offsetting negative impacts of low levels of rain in particularly dry areas. Prior to implementing such strategies, the natural conditions at the location of interest (e.g. clutch depth, environmental conditions, and beach characteristics) and natural hatchling sex ratios should be taken into consideration. These results provide insight into the effectiveness of nest shading and watering as climate mitigation techniques and illustrate important points of consideration in the crafting of such strategies.

Prescribed fire, snag population dynamics, and avian nest site selection

Treesearch

Karen E. Bagne; Kathryn L. Purcell; John T. Rotenberry

2008-01-01

Snags are an important resource for a wide variety of organisms, including cavity-nesting birds. We documented snag attributes in a mixed conifer forest dominated by ponderosa pine in the Sierra Nevada, California where fire is being applied during spring. A total of 328 snags were monitored before and after fire on plots burned once, burned twice, or left unburned to...

Rapid Classification of Landsat TM Imagery for Phase 1 Stratification Using the Automated NDVI Threshold Supervised Classification (ANTSC) Methodology

Treesearch

William H. Cooke; Dennis M. Jacobs

2005-01-01

FIA annual inventories require rapid updating of pixel-based Phase 1 estimates. Scientists at the Southern Research Station are developing an automated methodology that uses a Normalized Difference Vegetation Index (NDVI) for identifying and eliminating problem FIA plots from the analysis. Problem plots are those that have questionable land use/land cover information....

Monitoring Finnish Owls 1982-1996: methods and results

Treesearch

Pertti Saurola

1997-01-01

In 1982, the Raptor Grid, a nation-wide program for monitoring birds of prey was started by the Finnish Ringing Centre. Voluntary banders were asked to select a 10 x 10 km study plot and find annually all active nests or at least occupied territories of birds of prey from their study plot (annual total averaged 120). Since 1986, additional...

Influence of grazing and available moisture on breeding densities of grassland birds in the central platte river valley, Nebraska

USGS Publications Warehouse

Kim, D.H.; Newton, W.E.; Lingle, G.R.; Chavez-Ramirez, F.

2008-01-01

We investigated the relationship between grassland breeding bird densities and both grazing and available moisture in the central Platte River Valley. Nebraska between 1980 and 1996. We also compared species richness and community similarity of breeding birds in sedge (Carex spp.) meadows and mesic grasslands. Densities of two species had a significant relationship with grazing and six of seven focal species had a significant relationship with available moisture. Bobolink (Dolichonyx oryzivorus) and Brown-headed Cowbird (Molothrus ater) densities were lower in grazed plots compared to ungrazed plots, whereas Red-winged Blackbird (Agelaius phoeniceus) densities were greater in sedge-meadow plots compared to mesic grassland plots. Bobolink, Dickcissel (Spiza americana). and Brown-headed Cowbird were negatively associated with available moisture with breeding densities peaking during the driest conditions. Our results suggest that wet conditions increase species richness for the community through addition of wetland-dependant and wetland-associated birds, but decrease densities of ground-nesting grassland birds in wet-meadow habitats, whereas dry conditions reduce species richness but increase the density of the avian assemblage. We propose that wet-meadow habitats serve as local refugia for grassland-nesting birds during local or regional droughts.

Visual mining geo-related data using pixel bar charts

NASA Astrophysics Data System (ADS)

Hao, Ming C.; Keim, Daniel A.; Dayal, Umeshwar; Wright, Peter; Schneidewind, Joern

2005-03-01

A common approach to analyze geo-related data is using bar charts or x-y plots. They are intuitive and easy to use. But important information often gets lost. In this paper, we introduce a new interactive visualization technique called Geo Pixel Bar Charts, which combines the advantages of Pixel Bar Charts and interactive maps. This technique allows analysts to visualize large amounts of spatial data without aggregation and shows the geographical regions corresponding to the spatial data attribute at the same time. In this paper, we apply Geo Pixel Bar Charts to visually mining sales transactions and Internet usage from different locations. Our experimental results show the effectiveness of this technique for providing data distribution and exceptions from the map.

Correlation of ERTS MSS data and earth coordinate systems

NASA Technical Reports Server (NTRS)

Malila, W. A. (Principal Investigator); Hieber, R. H.; Mccleer, A. P.

1973-01-01

The author has identified the following significant results. Experience has revealed a problem in the analysis and interpretation of ERTS-1 multispectral scanner (MSS) data. The problem is one of accurately correlating ERTS-1 MSS pixels with analysis areas specified on aerial photographs or topographic maps for training recognition computers and/or evaluating recognition results. It is difficult for an analyst to accurately identify which ERTS-1 pixels on a digital image display belong to specific areas and test plots, especially when they are small. A computer-aided procedure to correlate coordinates from topographic maps and/or aerial photographs with ERTS-1 data coordinates has been developed. In the procedure, a map transformation from earth coordinates to ERTS-1 scan line and point numbers is calculated using selected ground control points nad the method of least squares. The map transformation is then applied to the earth coordinates of selected areas to obtain the corresponding ERTS-1 point and line numbers. An optional provision allows moving the boundaries of the plots inward by variable distances so the selected pixels will not overlap adjacent features.

Video image stabilization and registration--plus

NASA Technical Reports Server (NTRS)

Hathaway, David H. (Inventor)

2009-01-01

A method of stabilizing a video image displayed in multiple video fields of a video sequence includes the steps of: subdividing a selected area of a first video field into nested pixel blocks; determining horizontal and vertical translation of each of the pixel blocks in each of the pixel block subdivision levels from the first video field to a second video field; and determining translation of the image from the first video field to the second video field by determining a change in magnification of the image from the first video field to the second video field in each of horizontal and vertical directions, and determining shear of the image from the first video field to the second video field in each of the horizontal and vertical directions.

Putting density back into the habitat-quality equation: case study of an open-nesting forest bird.

PubMed

Pérot, Aurore; Villard, Marc-André

2009-12-01

Ecological traps and other cases of apparently maladaptive habitat selection cast doubt on the relevance of density as an indicator of habitat quality. Nevertheless, the prevalence of these phenomena remains poorly known, and density may still reflect habitat quality in most systems. We examined the relationship between density and two other parameters of habitat quality in an open-nesting passerine species: the Ovenbird (Seiurus aurocapilla). We hypothesized that the average individual bird makes a good decision when selecting its breeding territory and that territory spacing reflects site productivity or predation risk. Therefore, we predicted that density would be positively correlated with productivity (number of young fledged per unit area). Because individual performance is sensitive to events partly determined by chance, such as nest predation, we further predicted density would be weakly correlated or uncorrelated with the proportion of territories fledging young. We collected data in 23 study sites (25 ha each), 16 of which were located in untreated mature northern hardwood forest and seven in stands partially harvested (treated) 1-7 years prior to the survey. Density explained most of the variability in productivity (R(2)= 0.73), and there was no apparent decoupling between density and productivity in treated plots. In contrast, there was no significant relationship between density and the proportion of territories fledging >or=1 young over the entire breeding season. These results suggest that density reflects habitat quality at the plot scale in this study system. To our knowledge this is one of the few studies testing the value of territory density as an indicator of habitat quality in an open-nesting bird species on the basis of a relatively large number of sizeable study plots.

Accuracy assessment of biomass and forested area classification from modis, landstat-tm satellite imagery and forest inventory plot data

Treesearch

Dumitru Salajanu; Dennis M. Jacobs

2007-01-01

The objective of this study was to determine how well forestfnon-forest and biomass classifications obtained from Landsat-TM and MODIS satellite data modeled with FIA plots, compare to each other and with forested area and biomass estimates from the national inventory data, as well as whether there is an increase in overall accuracy when pixel size (spatial resolution...

Availability of nest cavity trees for wood ducks (Aix sponsa) at Sunkhaze Meadows National Wildlife Refuge, Maine

USGS Publications Warehouse

Clugston, D.A.

1999-01-01

The availability of natural cavities for cavitynesting waterfowl, especially wood ducks (Aix sponsa), was unknown ferating forest of Sunkhaze Meadows National Wildlife Refuge, ME. An assessment of cavity availability was needed to determine if the existing nesting box program should be increased. During November to March, 199697 and 199798, I sampled 56 onehalf ha random plots, stratified into 5 types (upland hardwood, upland conifer, upland mixwood, wetland conifer, and wetland hardwood) to assess availability of trees with cavities. The predominant tree species with cavities were red maple (Acer rubrum; 39%) and aspen (Populus sp.; 31%); 72% of all trees with cavities were alive. Density ees/plot averaged from 1.0 +0.4 (x +SE) in wetland softwoods to 1.9 +0.4 in upland hardwoods. This low density of potential cavity trees and the small mean dbh (39.4 +1.6 cm) indicate a young forest with few suitable cavities. Forested areas, especially hardwoods near canopy openings, need to be allowed to mature to increase the number and quality of future cavities. An expanded nest box program seems justified.

Response of breeding birds to aerial sprays of trichlorfon (Dylox) and carbaryl (Sevin-4-Oil) in Montana forests

USGS Publications Warehouse

DeWeese, L.R.; Henny, C.J.; Floyd, R.L.; Bobal, K.A.; Schultz, A.W.

1979-01-01

Breeding density, food, nesting success, and mortality of 20 bird species were monitored at Beaverhead National Forest, Montana, in 1975 in conjunction with experimental applications of trichlorfon (Dylox) and carbaryl (Sevin-4-oil) to western budworms (Choristoneura occidentalis). Bird species on nine 350- to 550-ha forested plots (three controls and three treated with each pesticide) were studied before and for 14 days after the spraying of trichlorfon at 1.1 kg in?9.4 L of Panasol AN3 per ha (1 pound active ingredient in 1.0 gallon/acre) and of carbaryl at 1.1 kg in 4.7 L of diesel oil per ha (l pound active ingredient in 0.5 gallon/acre). No significant decrease in bird numbers was detected from breeding-pair estimates or live bird counts after the spraying. Of the breeding pairs present before spraying, 92% remained on control plots, 89% on trichlorfon plots, and 92% on carbaryl plots. Counts of live birds made before and after spraying in three types of habitat supported the. results of the breeding-pair estimates. Nests with eggs or with young at the time of spraying were 74 and 97% successful, respectively, in control plots, 83 and 100% in plots sprayed with trichlorfon, and 86 and 100% in plots sprayed with carbaryl. No sick or dead birds were found after the spraying, although budworms were found in bird stomachs, and tracer-dye from the pesticide occurred on the feathers or feet of 74% of the 202 birds collected. Species dwelling in the tree canopy encountered the dye (and thus the pesticide) at a slightly higher rate (80%) than did species below the treetops (71 %) or near the ground and in open areas (70%).

Ant Foraging As an Indicator of Tropical Dry Forest Restoration.

PubMed

Hernández-Flores, J; Osorio-Beristain, M; Martínez-Garza, C

2016-08-01

Variation in foraging behavior may indicate differences in food availability and allow assessment of restoration actions. Ants are prominent bioindicators used in assessing ecological responses to disturbance. However, behavioral data have been poorly incorporated as an index. The foraging performance of red harvester ants was quantified in order to evaluate the success of a restoration ecology experiment in the tropical dry forest of Sierra de Huautla, Morelos, in central Mexico. Foraging performance by granivorous, Pogonomyrmex barbatus, ants was diminished after 6 and 8 years of cattle grazing and wood harvest were excluded as part of a restoration experiment in a highly degraded biome. Despite investing more time in foraging, ant colonies in exclusion plots showed lower foraging success and acquired less seed biomass than colonies in control plots. In line with the predictions of optimal foraging theory, in restored plots where ant foraging performance was poor, ants harvested a higher diversity of seeds. Reduced foraging success and increased harvest of non-preferred foods in exclusion plots were likely due to the growth of herbaceous vegetation, which impedes travel by foragers. Moreover, by 8 years of exclusion, 37% of nests in exclusion plots had disappeared compared to 0% of nests in control plots. Ants' foraging success and behavior were sensitive to changes in habitat quality due to the plant successional process triggered by a restoration intervention. This study spotlights on the utility of animal foraging behavior in the evaluation of habitat restoration programs. © The Authors 2016. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Effect of Methodological and Ecological Approaches on Heterogeneity of Nest-Site Selection of a Long-Lived Vulture

PubMed Central

Moreno-Opo, Rubén; Fernández-Olalla, Mariana; Margalida, Antoni; Arredondo, Ángel; Guil, Francisco

2012-01-01

The application of scientific-based conservation measures requires that sampling methodologies in studies modelling similar ecological aspects produce comparable results making easier their interpretation. We aimed to show how the choice of different methodological and ecological approaches can affect conclusions in nest-site selection studies along different Palearctic meta-populations of an indicator species. First, a multivariate analysis of the variables affecting nest-site selection in a breeding colony of cinereous vulture (Aegypius monachus) in central Spain was performed. Then, a meta-analysis was applied to establish how methodological and habitat-type factors determine differences and similarities in the results obtained by previous studies that have modelled the forest breeding habitat of the species. Our results revealed patterns in nesting-habitat modelling by the cinereous vulture throughout its whole range: steep and south-facing slopes, great cover of large trees and distance to human activities were generally selected. The ratio and situation of the studied plots (nests/random), the use of plots vs. polygons as sampling units and the number of years of data set determined the variability explained by the model. Moreover, a greater size of the breeding colony implied that ecological and geomorphological variables at landscape level were more influential. Additionally, human activities affected in greater proportion to colonies situated in Mediterranean forests. For the first time, a meta-analysis regarding the factors determining nest-site selection heterogeneity for a single species at broad scale was achieved. It is essential to homogenize and coordinate experimental design in modelling the selection of species' ecological requirements in order to avoid that differences in results among studies would be due to methodological heterogeneity. This would optimize best conservation and management practices for habitats and species in a global context. PMID:22413023

Extremely Low Frequency (ELF) Communications System Ecological Monitoring Program: Plan and Summary of 1982 Progress.

DTIC Science & Technology

1983-08-01

Program Acquisition Schedule A-8 LIST OF TABLES TABLE TITLE Page 1 Evolution of the ELF Communications Ecological 2 Moni tori ng Program 2 Summary of...performed on plots in maple-dominant, mixed hardwood stands in Michigan. NATIVE BEES Bees are important pollinators of flowering plants and are...SMALL MAMMALS AND NESTING BIRDS Small mammals and nesting birds represent an ecological level inter- mediate between plants and strict carnivores

Nest-site selection analysis of hooded crane (Grus monacha) in Northeastern China based on a multivariate ensemble model.

PubMed

Jiao, Shengwu; Guo, Yumin; Huettmann, Falk; Lei, Guangchun

2014-07-01

Avian nest-site selection is an important research and management subject. The hooded crane (Grus monacha) is a vulnerable (VU) species according to the IUCN Red List. Here, we present the first long-term Chinese legacy nest data for this species (1993-2010) with publicly available metadata. Further, we provide the first study that reports findings on multivariate nest habitat preference using such long-term field data for this species. Our work was carried out in Northeastern China, where we found and measured 24 nests and 81 randomly selected control plots and their environmental parameters in a vast landscape. We used machine learning (stochastic boosted regression trees) to quantify nest selection. Our analysis further included varclust (R Hmisc) and (TreenNet) to address statistical correlations and two-way interactions. We found that from an initial list of 14 measured field variables, water area (+), water depth (+) and shrub coverage (-) were the main explanatory variables that contributed to hooded crane nest-site selection. Agricultural sites played a smaller role in the selection of these nests. Our results are important for the conservation management of cranes all over East Asia and constitute a defensible and quantitative basis for predictive models.

A multi-scale assessment of forest primary production across the eastern USA using Forest Inventory and Analysis (FIA) and MODIS data

NASA Astrophysics Data System (ADS)

Kwon, Youngsang

As evidence of global warming continues to increase, being able to predict the relationship between forest growth rate and climate factors will be vital to maintain the sustainability and productivity of forests. Comprehensive analyses of forest primary production across the eastern US were conducted using remotely sensed MODIS and field-based FIA datasets. This dissertation primarily explored spatial patterns of gross and net carbon uptake in the eastern USA, and addressed three objectives. 1) Examine the use of pixel- and plot-scale screening variables to validate MODIS GPP predictions with Forest Inventory and Analysis (FIA) NPP measures. 2) Assess the net primary production (NPP) from MODIS and FIA at increasing levels of spatial aggregation using a hexagonal tiling system. 3) Assess the carbon use efficiency (CUE) calculated using a direct ratio of MODIS NPP to MODIS GPP and a standardized ratio of FIA NPP to MODIS GPP. The first objective was analyzed using total of 54,969 MODIS pixels and co-located FIA plots to validate MODIS GPP estimates. Eight SVs were used to test six hypotheses about the conditions under which MODIS GPP would be most strongly validated. SVs were assessed in terms of the tradeoff between improved relations and reduced number of samples. MODIS seasonal variation and FIA tree density were the two most efficient SVs followed by basic quality checks for each data set. The sequential application of SVs provided an efficient dataset of 17,090 co-located MODIS pixels and FIA plots, that raised the Pearson's correlation coefficient from 0.01 for the complete dataset of 54,969 plots to 0.48 for this screened subset of 17,090 plots. The second objective was addressed by aggregating data over increasing spatial extents so as to not lose plot- and pixel-level information. These data were then analyzed to determine the optimal scale with which to represent the spatial pattern of NPP. The results suggested an optimal scale of 390 km2. At that scale MODIS and FIA were most strongly correlated while maximizing the number of observation. The maps conveyed both local-scale spatial structure from FIA and broad-scale climatic trends from MODIS. The third objective examined whether carbon use efficiency (CUE) was constant or variable in relation to forest types, and to geographic and climatic variables. The results indicated that while CUEs exhibited unclear patterns by forest types, CUEs are variable to other environmental variables. CUEs are most strongly related to the climatic factors of precipitation followed by temperature. More complex and weaker relationships were found for the geographic factors of latitude and altitude, as they reflected a combination of phenomenological driving forces. The results of the three objectives will help us to identify factors that control carbon cycles and to quantify forest productivity. This will help improve our knowledge about how forest primary productivity may change in relation to ongoing climate change.

Grasshopper sparrow reproductive success and habitat use on reclaimed surface mines varies by age of reclamation

USGS Publications Warehouse

Wood, Petra; Ammer, Frank K.

2015-01-01

We studied 3 mountaintop mining–valley fill (MTMVF) complexes in southern West Virginia, USA to examine grasshopper sparrow (Ammodramus savannarum pratensis) demographic response to different age classes of mine land reclamation. For 71 nests monitored during the 2001–2002 breeding seasons, overall nest success (36%) was within the range of nest success rates previously reported for this species, but it was highest on more recently reclaimed sites (56%). Nest density and clutch size did not differ (P > 0.30) among reclamation age classes, whereas number of fledglings was greater (P = 0.01) on more recently reclaimed sites. We measured vegetation variables at 70 nest subplots and at 96 systematic subplots to compare nest vegetation with vegetation available on the plots. We found that nests occurred in areas with more bare ground near the nest, greater vegetation height–density surrounding the nest site, lower grass height, and fewer woody stems, similar to previous studies. As postreclamation age increased, vegetation height–density and maximum grass height increased, and sericea (Lespedeza cuneata) became more dominant. Nest success declined with increasing vegetation height–density at the nest. The grasslands available on these reclaimed mine complexes are of sufficient quality to support breeding populations of grasshopper sparrows, but nest success decreased on the older reclaimed areas. Without active management, grasslands on reclaimed MTMVF mines become less suitable for nesting grasshopper sparrows about 10 years after reclamation.

Avian nest success in midwestern forests fragmented by agriculture

USGS Publications Warehouse

Knutson, M.G.; Niemi, G.J.; Newton, W.E.; Friberg, M.A.

2004-01-01

We studied how forest-bird nest success varied by landscape context from 1996 to 1998 in an agricultural region of southeastern Minnesota, southwestern Wisconsin, and northeastern Iowa. Nest success was 48% for all nests, 82% for cavity-nesting species, and 42% for cup-nesting species. Mayfield-adjusted nest success for five common species ranged from 23% for the American Redstart (Setophaga ruticilla) to 43% for the Eastern Wood-Pewee (Contopus virens). Nest success was lowest for open-cup nesters, species that reject Brown-headed Cowbird (Molothrus ater) eggs, species that nest near forest edges, and Neo-tropical migrants. The proportion of forest core area in a 5-km radius around the plot had a weakly negative relationship with daily survival rate of nests for all species pooled and for medium or high canopy nesters, species associated with interior and edge habitats, open-cup nesters, and nests located between 75 and 199 m from an edge. The proportion of forest core area was positively related to daily survival rate only for ground and low nesters. Our findings are in contrast to a number of studies from the eastern United States reporting strong positive associations between forest area and nesting success. Supported models of habitat associations changed with the spatial scale of analysis and included variables not often considered in studies of forest birds, including the proportion of water, shrubs, and grasslands in the landscape. Forest area may not be a strong indicator of nest success in landscapes where all the available forests are fragmented.

Ecosystem respiration, vegetation development and soil nitrogen in relation to breeding density of seagulls on a pristine volcanic island, Surtsey, Iceland

NASA Astrophysics Data System (ADS)

Sigurdsson, B. D.; Magnusson, B.

2009-08-01

Since its birth in 1963 by volcanic eruption in the North Atlantic Ocean off Iceland, Surtsey has been a unique natural laboratory on how organisms colonize volcanic islands and form ecosystems with contrasting structure and function. In July, 2004, ecosystem respiration rate, soil properties and surface cover of vascular plants were measured on 21 plots distributed among the main plant communities found 40 years after the primary succession started. The plots could be divided into two groups, inside and outside seagull (Larus sp.) colonies found on the island. Vegetation cover of the plots was strongly related to the density of seagull nests within and around them. The occurrence of seagull nests and increased vegetation also coincided with significant increase in ecosystem respiration, soil carbon and nitrogen, and with significantly lower soil pH and soil temperatures. The ecosystem respiration was high inside the gull colonies, similar to the highest fluxes measured in drained wetlands or agricultural fields in Iceland. The most important factor for vegetation succession and ecosystem function on Surtsey seems to be the amount of nitrogen, which was mainly brought in by the seagulls.

Efficacy of Maxforce bait for control of the Argentine ant (Hymenoptera: Formicidae) in Haleakala National Park, Maui, Hawaii

USGS Publications Warehouse

Krushelnycky, Paul D.; Reimer, Neil J.

1998-01-01

In an effort to develop a chemical control strategy for the invasive Argentine ant, Linepithema humile (Mayr), in Haleakala National Park, Maxforce, which is formulated with 0.9% hydramethylnon, was used in test plots to determine the efficacy of the ant bait in the field. Initially, Maxforce was tested at 2 application rates: broadcast at 2.25 kg/ha (2 lb/acre) and 4.5 kg/ha (4 lb/acre). Later, the following treatments were also tested: a Maxforce and honey granule mix, Maxforce with 0.5% hydramethylnon, Maxforce with a different solvent, Maxforce distributed in exposed piles, and Maxforce distributed in covered piles. Although there were significant differences in the magnitude of ant reduction among the various treatments, all yielded the same general result. Foraging ant numbers at monitoring bait stations declined an average maximum of 97.0% in the test plots, with no plots achieving 100% reduction. At 2 mo after treatment the mean number of foraging ants was reduced by 92.1%. Nest survival in the plots appeared to be affected to a lesser degree, but could not be monitored accurately over the longer term because of the phenomenon of nest movement. A 2nd identical application 1 mo after the initial application in plots treated with Maxforce at 2.25 and 4.5 kg/ha did not result in eradication. Bait molding, quick mortality, and toxicant breakdown from UV radiation created a short exposure time to the bait and toxicant, which may have been the main obstacle to achieving eradication.

Double sampling to estimate density and population trends in birds

USGS Publications Warehouse

Bart, Jonathan; Earnst, Susan L.

2002-01-01

We present a method for estimating density of nesting birds based on double sampling. The approach involves surveying a large sample of plots using a rapid method such as uncorrected point counts, variable circular plot counts, or the recently suggested double-observer method. A subsample of those plots is also surveyed using intensive methods to determine actual density. The ratio of the mean count on those plots (using the rapid method) to the mean actual density (as determined by the intensive searches) is used to adjust results from the rapid method. The approach works well when results from the rapid method are highly correlated with actual density. We illustrate the method with three years of shorebird surveys from the tundra in northern Alaska. In the rapid method, surveyors covered ~10 ha h-1 and surveyed each plot a single time. The intensive surveys involved three thorough searches, required ~3 h ha-1, and took 20% of the study effort. Surveyors using the rapid method detected an average of 79% of birds present. That detection ratio was used to convert the index obtained in the rapid method into an essentially unbiased estimate of density. Trends estimated from several years of data would also be essentially unbiased. Other advantages of double sampling are that (1) the rapid method can be changed as new methods become available, (2) domains can be compared even if detection rates differ, (3) total population size can be estimated, and (4) valuable ancillary information (e.g. nest success) can be obtained on intensive plots with little additional effort. We suggest that double sampling be used to test the assumption that rapid methods, such as variable circular plot and double-observer methods, yield density estimates that are essentially unbiased. The feasibility of implementing double sampling in a range of habitats needs to be evaluated.

Population Census of a Large Common Tern Colony with a Small Unmanned Aircraft

PubMed Central

Chabot, Dominique; Craik, Shawn R.; Bird, David M.

2015-01-01

Small unmanned aircraft systems (UAS) may be useful for conducting high-precision, low-disturbance waterbird surveys, but limited data exist on their effectiveness. We evaluated the capacity of a small UAS to census a large (>6,000 nests) coastal Common tern (Sterna hirundo) colony of which ground surveys are particularly disruptive and time-consuming. We compared aerial photographic tern counts to ground nest counts in 45 plots (5-m radius) throughout the colony at three intervals over a nine-day period in order to identify sources of variation and establish a coefficient to estimate nest numbers from UAS surveys. We also compared a full colony ground count to full counts from two UAS surveys conducted the following day. Finally, we compared colony disturbance levels over the course of UAS flights to matched control periods. Linear regressions between aerial and ground counts in plots had very strong correlations in all three comparison periods (R 2 = 0.972–0.989, P < 0.001) and regression coefficients ranged from 0.928–0.977 terns/nest. Full colony aerial counts were 93.6% and 94.0%, respectively, of the ground count. Varying visibility of terns with ground cover, weather conditions and image quality, and changing nest attendance rates throughout incubation were likely sources of variation in aerial detection rates. Optimally timed UAS surveys of Common tern colonies following our method should yield population estimates in the 93–96% range of ground counts. Although the terns were initially disturbed by the UAS flying overhead, they rapidly habituated to it. Overall, we found no evidence of sustained disturbance to the colony by the UAS. We encourage colonial waterbird researchers and managers to consider taking advantage of this burgeoning technology. PMID:25874997

Predation on seabirds by red foxes at Shaiak Island, Alaska

USGS Publications Warehouse

Petersen, M.R.

1982-01-01

Two Red Foxes (Vulpes fulva) that invaded Shaiak Island before the 1976 nesting season had a marked impact on the nesting success of five of seven species of seabirds breeding on the island that year. Common Eiders (Somateria mollissima), Glaucous-winged Gulls (Larus glaucescens), and Common Murres (Uria aalge), that nest in areas accessible to foxes, did not raise any young to fledging. Double-crested Cormorants (Phalacrocorax auritus) were only slightly more successful; 13 (4.3%) of 300 pairs raised one or more young to fledging. Evidence suggested that 21 (35.6%) of 62 pairs of Tufted Puffins (Lunda cirrhata) lost eggs or chicks to foxes, and foxes killed at least 13 (8.3%) of 156 adult puffins on ten sample plots. Conversely, Black-Legged Kittiwakes (Rissa tridactyla) and Pelagic Cormorants (Phalacrocorax pelagicus), which nested primarily on cliffs inaccessible to foxes, lost very few nests. There was no apparent change in general nest site selections by seabirds the following year, when foxes were no longer present. Any avoidance by birds of areas vulnerable to fox predation would probably be discernible only after several years of continuous predation.

A meta-analysis of the effects of common management actions on the nest success of North American birds.

PubMed

Hartway, Cynthia; Mills, L Scott

2012-08-01

Management strategies for the recovery of declining bird populations often must be made without sufficient data to predict the outcome of proposed actions or sufficient time and resources necessary to collect these data. We quantitatively reviewed studies of bird management in Canada and the United States to evaluate the relative efficacy of 4 common management interventions and to determine variables associated with their success. We compared how livestock exclusion, prescribed burning, removal of predators, and removal of cowbirds (Molothrus ater) affect bird nest success and used meta-regression to evaluate the influence of species and study-specific covariates on management outcomes. On average, all 4 management interventions increased nest success. When common species and threatened, endangered, or declining species (as defined by long-term trend data from the North American Breeding Bird Survey) were analyzed together, predator removal was the most effective management option. The difference in mean nest success between treatment and control plots in predator-removal experiments was more than twice that of either livestock exclusion or prescribed burning. However, when we considered management outcomes from only threatened, endangered, or declining species, livestock exclusions resulted in the greatest mean increase in nest success, more than twice that of the 3 other treatments. Our meta-regression results indicated that between-species variation accounted for approximately 86%, 40%, 35%, and 7% of the overall variation in the results of livestock-exclusion, prescribed-burn, predator-removal, and cowbird-removal studies, respectively. However, the covariates we tested explained significant variation only in outcomes among prescribed-burn studies. The difference in nest success between burned and unburned plots displayed a significant, positive trend in association with time since fire and was significantly larger in grasslands than in woodlands. Our results highlight the importance of comparative studies on management effects in developing efficient and effective conservation strategies. ©2012 Society for Conservation Biology.

APT: Aperture Photometry Tool

NASA Astrophysics Data System (ADS)

Laher, Russ

2012-08-01

Aperture Photometry Tool (APT) is software for astronomers and students interested in manually exploring the photometric qualities of astronomical images. It has a graphical user interface (GUI) which allows the image data associated with aperture photometry calculations for point and extended sources to be visualized and, therefore, more effectively analyzed. Mouse-clicking on a source in the displayed image draws a circular or elliptical aperture and sky annulus around the source and computes the source intensity and its uncertainty, along with several commonly used measures of the local sky background and its variability. The results are displayed and can be optionally saved to an aperture-photometry-table file and plotted on graphs in various ways using functions available in the software. APT is geared toward processing sources in a small number of images and is not suitable for bulk processing a large number of images, unlike other aperture photometry packages (e.g., SExtractor). However, APT does have a convenient source-list tool that enables calculations for a large number of detections in a given image. The source-list tool can be run either in automatic mode to generate an aperture photometry table quickly or in manual mode to permit inspection and adjustment of the calculation for each individual detection. APT displays a variety of useful graphs, including image histogram, and aperture slices, source scatter plot, sky scatter plot, sky histogram, radial profile, curve of growth, and aperture-photometry-table scatter plots and histograms. APT has functions for customizing calculations, including outlier rejection, pixel “picking” and “zapping,” and a selection of source and sky models. The radial-profile-interpolation source model, accessed via the radial-profile-plot panel, allows recovery of source intensity from pixels with missing data and can be especially beneficial in crowded fields.

Lesser prairie-chicken nest site selection, microclimate, and nest survival in association with vegetation response to a grassland restoration program

USGS Publications Warehouse

Boal, Clint W.; Grisham, Blake A.; Haukos, David A.; Zavaleta, Jennifer C.; Dixon, Charles

2014-01-01

Climate models predict that the region of the Great Plains Landscape Conservation Cooperative (GPLCC) will experience increased maximum and minimum temperatures, reduced frequency but greater intensity of precipitation events, and earlier springs. These climate changes along with different landscape management techniques may influence the persistence of the lesser prairie-chicken (Tympanuchus pallidicinctus), a candidate for protection under the Endangered Species Act and a priority species under the GPLCC, in positive or negative ways. The objectives of this study were to conduct (1) a literature review of lesser prairie-chicken nesting phenology and ecology, (2) an analysis of thermal aspects of lesser prairie-chicken nest microclimate data, and (3) an analysis of nest site selection, nest survival, and vegetation response to 10 years of tebuthiuron and/or grazing treatments. We found few reports in the literature containing useful data on the nesting phenology of lesser prairie-chickens; therefore, managers must rely on short-term observations and measurements of parameters that provide some predictive insight into climate impacts on nesting ecology. Our field studies showed that prairie-chickens on nests were able to maintain relatively consistent average nest temperature of 31 °C and nest humidities of 56.8 percent whereas average external temperatures (20.3–35.0 °C) and humidities (35.2–74.9 percent) varied widely throughout the 24 hour (hr) cycle. Grazing and herbicide treatments within our experimental areas were designed to be less intensive than in common practice. We determined nest locations by radio-tagging hen lesser prairie-chickens captured at leks, which are display grounds at which male lesser prairie-chickens aggregate and attempt to attract a female for mating. Because nest locations selected by hen lesser prairie-chicken are strongly associated with the lek at which they were captured, we assessed nesting habitat use on the basis of hens captured at individual leks, and then for all leks pooled. There was no clear pattern of selection for treatment type for nest placement among hens associated with individual leks; however, when hens from all leks were pooled, we found nesting lesser prairie-chickens selected control plots for nesting over plots that were grazed, treated with tebuthiuron, or were both grazed and treated with tebuthiuron. Overall, the probability of a nest surviving the incubation period was 0.57 for this study and did not vary significantly among treatment types. In contrast to nesting preference for untreated habitats, lek use exhibited no noticeable selection of treatment type. Over the 10 years of the habitat management study, there was 91 percent less sand shinnery oak (Quercus havardii) in treated areas than untreated areas. The removal of sand shinnery oak made environmental soil moisture more available for grasses and forbs to germinate and grow. Grasses increased by 149 percent and forbs increased by 257 percent in treated areas as compared to untreated areas throughout the study period. Our combined results, including our habitat selection analysis at the individual lek level, indicated that reduced rates of herbicide and short-duration grazing treatments were not detrimental to nesting lesser prairie-chickens and that populations of lesser prairie-chickens in shrub-dominated ecosystems may benefit from reduced rates of herbicide application and short duration of grazing that results in increased habitat heterogeneity.

Ganalyzer: A tool for automatic galaxy image analysis

NASA Astrophysics Data System (ADS)

Shamir, Lior

2011-05-01

Ganalyzer is a model-based tool that automatically analyzes and classifies galaxy images. Ganalyzer works by separating the galaxy pixels from the background pixels, finding the center and radius of the galaxy, generating the radial intensity plot, and then computing the slopes of the peaks detected in the radial intensity plot to measure the spirality of the galaxy and determine its morphological class. Unlike algorithms that are based on machine learning, Ganalyzer is based on measuring the spirality of the galaxy, a task that is difficult to perform manually, and in many cases can provide a more accurate analysis compared to manual observation. Ganalyzer is simple to use, and can be easily embedded into other image analysis applications. Another advantage is its speed, which allows it to analyze ~10,000,000 galaxy images in five days using a standard modern desktop computer. These capabilities can make Ganalyzer a useful tool in analyzing large datasets of galaxy images collected by autonomous sky surveys such as SDSS, LSST or DES.

3-D Spatial Resolution of 350 μm Pitch Pixelated CdZnTe Detectors for Imaging Applications.

PubMed

Yin, Yongzhi; Chen, Ximeng; Wu, Heyu; Komarov, Sergey; Garson, Alfred; Li, Qiang; Guo, Qingzhen; Krawczynski, Henric; Meng, Ling-Jian; Tai, Yuan-Chuan

2013-02-01

We are currently investigating the feasibility of using highly pixelated Cadmium Zinc Telluride (CdZnTe) detectors for sub-500 μ m resolution PET imaging applications. A 20 mm × 20 mm × 5 mm CdZnTe substrate was fabricated with 350 μ m pitch pixels (250 μ m anode pixels with 100 μ m gap) and coplanar cathode. Charge sharing among the pixels of a 350 μ m pitch detector was studied using collimated 122 keV and 511 keV gamma ray sources. For a 350 μ m pitch CdZnTe detector, scatter plots of the charge signal of two neighboring pixels clearly show more charge sharing when the collimated beam hits the gap between adjacent pixels. Using collimated Co-57 and Ge-68 sources, we measured the count profiles and estimated the intrinsic spatial resolution of 350 μ m pitch detector biased at -1000 V. Depth of interaction was analyzed based on two methods, i.e., cathode/anode ratio and electron drift time, in both 122 keV and 511 keV measurements. For single-pixel photopeak events, a linear correlation between cathode/anode ratio and electron drift time was shown, which would be useful for estimating the DOI information and preserving image resolution in CdZnTe PET imaging applications.

3-D Spatial Resolution of 350 μm Pitch Pixelated CdZnTe Detectors for Imaging Applications

PubMed Central

Yin, Yongzhi; Chen, Ximeng; Wu, Heyu; Komarov, Sergey; Garson, Alfred; Li, Qiang; Guo, Qingzhen; Krawczynski, Henric; Meng, Ling-Jian; Tai, Yuan-Chuan

2016-01-01

We are currently investigating the feasibility of using highly pixelated Cadmium Zinc Telluride (CdZnTe) detectors for sub-500 μm resolution PET imaging applications. A 20 mm × 20 mm × 5 mm CdZnTe substrate was fabricated with 350 μm pitch pixels (250 μm anode pixels with 100 μm gap) and coplanar cathode. Charge sharing among the pixels of a 350 μm pitch detector was studied using collimated 122 keV and 511 keV gamma ray sources. For a 350 μm pitch CdZnTe detector, scatter plots of the charge signal of two neighboring pixels clearly show more charge sharing when the collimated beam hits the gap between adjacent pixels. Using collimated Co-57 and Ge-68 sources, we measured the count profiles and estimated the intrinsic spatial resolution of 350 μm pitch detector biased at −1000 V. Depth of interaction was analyzed based on two methods, i.e., cathode/anode ratio and electron drift time, in both 122 keV and 511 keV measurements. For single-pixel photopeak events, a linear correlation between cathode/anode ratio and electron drift time was shown, which would be useful for estimating the DOI information and preserving image resolution in CdZnTe PET imaging applications. PMID:28250476

Factor determining prochard nest predation along a wetland gradient

USGS Publications Warehouse

Albrecht, T.; Horak, D.; Kreisinger, J.; Weidinger, K.; Klvana, P.; Michot, T.C.

2006-01-01

Waterfowl management on breeding grounds focuses on improving nest success, but few studies have compared waterfowl nest success and factors affecting nest survival along a wetland gradient and simultaneously identified nest predators. We monitored nests (n = 195) of common pochards (Aythya ferina) in Trebon Basin Biosphere Reserve, Czech Republic, during 1999-2002. Daily nest survival rates (DSRs, logistic-exposure) declined from island (0.985, 95% confidence interval, 0.978-0.991) to overwater (0.962, 0.950-0.971) and terrestrial (0.844, 0.759-0.904) nests. The most parsimonious model for DSRs included habitat class (DSRs: island > overwater > terrestrial) and nest visibility. Nest survival was improved by reduced nest visibility, increased water depth, and increased distance from the nest to habitat edge in littoral habitats. On islands, nest success increased with advancing date and increased distance to open water. A model of constant nest survival best explained the data for terrestrial nests. There were no observer effects on DSRs in any habitat. In 2003, artificial nests (n = 180; 120 contained a wax-filled egg) were deployed on study plots. The model that best explained variation in DSRs for artificial nests included only 1 variable: habitat class (DSRs: island ??? overwater > terrestrial). Mammalian predation of artificial nests (by foxes [Vulpes vulpes] and martens [Martes spp.]) was more likely in terrestrial habitats than in littoral habitats or on islands. By contrast, corvids and marsh harriers (Circus aeruginosus) prevailed among predators of overwater and island nests. Our data indicate that artificial islands and wide strips of littoral vegetation may represent secure breeding habitats for waterfowl because those habitats allow nests to be placed in areas that are not accessible to, or that are avoided by, mammalian predators. Management actions should be aimed at preserving these habitats. This, along with creation of new artificial islands, could help to enhance breeding productivity of pochards and possibly other waterfowl species inhabiting man-made ponds.

Preliminary Evaluation of AIS Spectra Along a Topographic/moisture Gradient in the Nebraska Sandhills

NASA Technical Reports Server (NTRS)

Runquist, D. C.

1985-01-01

Six spectral plots, each summarizing single-pixel reflectance for 128 channels of Airborne Imaging Spectrometer (AIS) data, were examined. The six sample pixels were located along a topographic/moisture gradient from lake surface to dune top in the Nebraska Sandhills. AIS spectra for various moisture regimes/vegetative zones appear quite logical, with a general positive relationship between increasing elevation (i.e., decreasing access of plant roots to water) and increasing reflectance in the spectral regions diagnostic of leaf-water content (i.e., bands centered on 1.65 and 2.20 microns).

Effects of herring gulls and great black-backed gulls on breeding piping plovers, South Monomoy Island, Massachusetts. Final Report

USGS Publications Warehouse

Keane, S.E.; Fraser, J.D.; Buckley, P.A.

2002-01-01

The large population of breeding herring gulls and great black-backed gulls on South Monomoy Island, Cape Cod, Massachusetts has been thought to negatively affect the breeding success of the threatened piping plover. Following the Piping Plover Recovery Plan's call for gull colonies to be removed from piping plover breeding sites, in 1996, the USFWS conducted gull removal on part of South Monomoy Island. We determined relative gull abundance on South Monomoy Island from 1998-2000 by counting gulls within 100-m radius plots located on the shoreline. We quantified piping plover behavior and habitat use by conducting instantaneous and 5-minute behavioral observations. We quantified characteristics of piping plover nesting habitat by measuring characteristics along random transects. We measured gull abundance, beach width, and prey abundance, and then used logistic regression to determine what habitat characteristics influenced piping plover nesting area selection. We monitored piping plover reproductive success and population fluctuations on South Monomoy Island. Gull abundance in the gull-removal area was lower than gull abundance in the reference area throughout the piping plover breeding season. The difference in gull abundance between the areas did not affect piping plover behavior, nest success, chick survival, or productivity. We found that gull removal did not result in an increased piping plover population on the island. In both management areas, prenesting plovers preferred to forage in moist substrate habitats. Wide backshore and open vegetation habitats characterized nesting areas. Broods spent most of their time foraging and preferred moist substrate habitats when available. Plovers were not prevented from occupying more suitable habitat by large gulls. Fewer large gulls were observed near prenesting plovers, plover nests, and plover broods than near random plots. Fewer large gulls were observed in plover nesting areas than in unused areas when the nesting areas were defined by all area within 100-m or 500-m of a plover nest. We argue that this apparent spatial separation between piping plovers and large gulls is due to different habitat preferences among the species. We found that gull removal on South Monomoy Island did not result in increased piping plover reproductive success, and large gulls did not affect breeding piping plovers on South Monomoy Island from 1998-2000.

Patch size and landscape effects on density and nesting success of grassland birds

USGS Publications Warehouse

Winter, Maiken; Johnson, Douglas H.; Shaffer, Jill A.; Donovan, Therese M.; Svedarsky, W. Daniel

2006-01-01

Current management recommendations for grassland birds in North America emphasize providing large patches of grassland habitat within landscapes that have few forest or shrubland areas. These Bird Conservation Areas are being proposed under the assumption that large patches of habitat in treeless landscapes will maintain viable populations of grassland birds. This assumption requires that patch size and landscape features affect density and nesting success of grassland birds, and that these effects are consistent among years and regions and across focal species. However, these assumptions have not yet been validated for grassland birds, and the relative importance of local vegetation structure, patch size, and landscape composition on grassland bird populations is not well known. In addition, factors influencing grassland bird nesting success have been investigated mostly in small-scale and short-duration studies. To develop management guidelines for grassland birds, we tested the spatial and temporal repeatability of the influence of patch size and landscape composition on density and nesting success of 3 grassland passerines, after controlling for local-scale vegetation structure, climate, and—when analyzing nest success—bird density. We conducted our study during 4 years (1998–2001) in 44 study plots that were set up in 3 regions of the northern tallgrass prairie in Minnesota and North Dakota, USA. In these study plots we measured density and nesting success of clay-colored sparrows (Spizella pallida), Savannah sparrows (Passerculus sandwichensis), and bobolinks (Dolichonyx oryzivorus). Statistical models indicated that density was influenced by patch size, landscape, region, and local vegetation structure more so than by local vegetation structure alone. Both magnitude and direction of the response of density to patch size varied among regions, years, and species. In contrast, the direction of landscape effects was consistent among regions, years, and between Savannah sparrows and bobolinks. In each species, this landscape effect was independent of patch size. Nesting success was not clearly influenced by patch size or landscape composition, and none of the factors that influenced avian density also influenced nesting success in any of the 3 species. General statements on “optimal habitat” for grassland birds should therefore be viewed cautiously. Instead, long-term studies in different regions as well as a deeper understanding of the local system are needed to determine which factors are most important for grassland birds in a particular area.

Nesting tree characteristics of heronry birds of urban ecosystems in peninsular India: implications for habitat management

PubMed Central

Sinu, Palatty Allesh

2017-01-01

Abstract Wetland ecosystems, particularly the mangrove forest, are the primary wild habitat of heronry birds. However, urban ecosystems have become a favorite breeding habitat of these birds. To provide inputs into the habitat management for conservation of these birds, we investigated the quantitative and qualitative characteristics of nesting trees of heronry birds in the urban environment of the North Kerala region of peninsular India. Census on nesting trees was done in 3 major microhabitats of the urban ecosystem: avenues of national highways and towns, nonresidential plots, and residential areas apart from the mangrove islets in the peri-urban locality. The study found that 174 trees of 22 species hosted 1,928 heronry bird nests in the urban habitats; mangrove forests, although plentiful in the study area, hosted only about 20% of the total nests encountered in the study. Rain trees Samanea saman (43.7%) were the most available nesting tree. The greatest number of nests and nesting trees were encountered on the roads of urban areas, followed by nonresidential areas and residential areas. The differences in the observed frequencies of nesting trees in 3 microhabitats and in 3 types of roads (national highways > state highways > small pocket road) were significant. Canopy spread, girth size, and quality of the trees predicted the tree selection of the heronry birds in urban environments. Therefore, we recommend proper management and notification of the identified nesting trees as protected sites for the conservation of herorny birds. PMID:29492020

Nesting tree characteristics of heronry birds of urban ecosystems in peninsular India: implications for habitat management.

PubMed

Roshnath, Ramesh; Sinu, Palatty Allesh

2017-12-01

Wetland ecosystems, particularly the mangrove forest, are the primary wild habitat of heronry birds. However, urban ecosystems have become a favorite breeding habitat of these birds. To provide inputs into the habitat management for conservation of these birds, we investigated the quantitative and qualitative characteristics of nesting trees of heronry birds in the urban environment of the North Kerala region of peninsular India. Census on nesting trees was done in 3 major microhabitats of the urban ecosystem: avenues of national highways and towns, nonresidential plots, and residential areas apart from the mangrove islets in the peri-urban locality. The study found that 174 trees of 22 species hosted 1,928 heronry bird nests in the urban habitats; mangrove forests, although plentiful in the study area, hosted only about 20% of the total nests encountered in the study. Rain trees Samanea saman (43.7%) were the most available nesting tree. The greatest number of nests and nesting trees were encountered on the roads of urban areas, followed by nonresidential areas and residential areas. The differences in the observed frequencies of nesting trees in 3 microhabitats and in 3 types of roads (national highways > state highways > small pocket road) were significant. Canopy spread, girth size, and quality of the trees predicted the tree selection of the heronry birds in urban environments. Therefore, we recommend proper management and notification of the identified nesting trees as protected sites for the conservation of herorny birds.

A fractal concentration area method for assigning a color palette for image representation

NASA Astrophysics Data System (ADS)

Cheng, Qiuming; Li, Qingmou

2002-05-01

Displaying the remotely sensed image with a proper color palette is the first task in any kind of image processing and pattern recognition in GIS and image processing environments. The purpose of displaying the image should be not only to provide a visual representation of the variance of the image, although this has been the primary objective of most conventional methods, but also the color palette should reflect real-world features on the ground which must be the primary objective of employing remotely sensed data. Although most conventional methods focus only on the first purpose of image representation, the concentration-area ( C- A plot) fractal method proposed in this paper aims to meet both purposes on the basis of pixel values and pixel value frequency distribution as well as spatial and geometrical properties of image patterns. The C- A method can be used to establish power-law relationships between the area A(⩾ s) with the pixel values greater than s and the pixel value s itself after plotting these values on log-log paper. A number of straight-line segments can be manually or automatically fitted to the points on the log-log paper, each representing a power-law relationship between the area A and the cutoff pixel value for s in a particular range. These straight-line segments can yield a group of cutoff values on the basis of which the image can be classified into discrete classes or zones. These zones usually correspond to the real-world features on the ground. A Windows program has been prepared in ActiveX format for implementing the C- A method and integrating it into other GIS and image processing systems. A case study of Landsat TM band 5 has been used to demonstrate the application of the method and the flexibility of the computer program.

Methods of editing cloud and atmospheric layer affected pixels from satellite data

NASA Technical Reports Server (NTRS)

Nixon, P. R. (Principal Investigator); Wiegand, C. L.; Richardson, A. J.; Johnson, M. P.

1981-01-01

Plotted transects made from south Texas daytime HCMM data show the effect of subvisible cirrus (SCI) clouds in the emissive (IR) band but the effect is unnoticable in the reflective (VIS) band. The depression of satellite indicated temperatures ws greatest in the center of SCi streamers and tapered off at the edges. Pixels of uncontaminated land and water features in the HCMM test area shared identical VIS and IR digital count combinations with other pixels representing similar features. A minimum of 0.015 percent repeats of identical VIS-IR combinations are characteristic of land and water features in a scene of 30 percent cloud cover. This increases to 0.021 percent of more when the scene is clear. Pixels having shared VIS-IR combinations less than these amounts are considered to be cloud contaminated in the cluster screening method. About twenty percent of SCi was machine indistinguishable from land features in two dimensional spectral space (VIS vs IR).

Avian associations of the Northern Great Plains grasslands

USGS Publications Warehouse

Kantrud, H.A.; Kologiski, R.L.

1983-01-01

The grassland region of the northern Great Plains was divided into six broad subregions by application of an avian indicator species analysis to data obtained from 582 sample plots censused during the breeding season. Common, ubiquitous species and rare species had little classificatory value and were eliminated from the data set used to derive the avian associations. Initial statistical division of the plots likely reflected structure of the dominant plant species used for nesting; later divisions probably were related to foraging or nesting cover requirements based on vegetation height or density, habitat heterogeneity, or possibly to the existence of mutually similar distributions or shared areas of greater than average abundance for certain groups of species. Knowledge of the effects of grazing, mostly by cattle, on habitat use by the breeding bird species was used to interpret the results of the indicator species analysis. Moderate grazing resulted in greater species richness in nearly all subregions; effects of grazing on total bird density were more variable.

[Termites (Isoptera) in forest ecosystems of Cat Tien National Park (Southern Vietnam)].

PubMed

Beliaeva, N V; Tiunov, A V

2010-01-01

The species composition and termite community populations were studied and the total land termites biomass was estimated in five forest habitats of Cat Tien National Park, Southern Vietnam. Twenty-four species of two families, Rhinotermitidae (1 species) and Termitidae (23 species), the predominant representatives of the subfamily Macrotermitinae, were found in mounds and in soil samples. On the test plots the density of termite mounds averaged 68 per hectare, primarily the mounds of three Macrotermes species. Destructive sampling allowed estimation of the caste composition and total community biomass based on six termite mounds of the prevailing species (Globitermes sulphureus, Microcerotermes burmanicus, Macrotermes carbonarius, M. gilvus, M. malaccensis, and Hypotermes obscuriceps). The total number of termites in the nests ranged from 65 000 to 3 150 000 individuals with the total biomass ranging from 185 to 2440 g live weight. The total abundance of nesting Macrotermes species alone could conservatively be estimated as 2.5 million individuals and 20.5 kg live weight per hectare. The number of soil- and litter-feeding termites averaged for the test plots was estimated at about 60 ind./m2. Four species dominating on the test plots (M. carbonarius, M. gilvus, M. malaccensis, and H. obscuriceps) belong to active tree litter feeders.

Multi-Resolution Climate Ensemble Parameter Analysis with Nested Parallel Coordinates Plots.

PubMed

Wang, Junpeng; Liu, Xiaotong; Shen, Han-Wei; Lin, Guang

2017-01-01

Due to the uncertain nature of weather prediction, climate simulations are usually performed multiple times with different spatial resolutions. The outputs of simulations are multi-resolution spatial temporal ensembles. Each simulation run uses a unique set of values for multiple convective parameters. Distinct parameter settings from different simulation runs in different resolutions constitute a multi-resolution high-dimensional parameter space. Understanding the correlation between the different convective parameters, and establishing a connection between the parameter settings and the ensemble outputs are crucial to domain scientists. The multi-resolution high-dimensional parameter space, however, presents a unique challenge to the existing correlation visualization techniques. We present Nested Parallel Coordinates Plot (NPCP), a new type of parallel coordinates plots that enables visualization of intra-resolution and inter-resolution parameter correlations. With flexible user control, NPCP integrates superimposition, juxtaposition and explicit encodings in a single view for comparative data visualization and analysis. We develop an integrated visual analytics system to help domain scientists understand the connection between multi-resolution convective parameters and the large spatial temporal ensembles. Our system presents intricate climate ensembles with a comprehensive overview and on-demand geographic details. We demonstrate NPCP, along with the climate ensemble visualization system, based on real-world use-cases from our collaborators in computational and predictive science.

A temporal/spectral analysis of small grain crops and confusion crops. [North Dakota

NASA Technical Reports Server (NTRS)

Johnson, W. R. (Principal Investigator)

1981-01-01

Spectral data from the LANDSAT-2 satellite were used to study the growth cycles of fields of wheat, barley, alfalfa, corn, sunflowers, soybeans, rye, flax, oats, millet, grass, and hay. Signatures of pastures, trees, and idle fallow were also studied. The growth cycles were portrayed in the form of temporal plots of the greeness-brightness transformation vector applied to average channel pixel values within the fields, all of which were in three counties in North Dakota. The plots of each crop reveal characteristics which can be used in crop classification procedures.

Plant guide: Munro's globemallow (Sphaeralcea munroana)

Treesearch

Pamela L. S. Pavek; James H. Cane; Olga A. Kildisheva; Anthony S. Davis

2011-01-01

Munro's globemallow attracts many species of bees, a few of which are specialists, requiring pollen and nectar only from Sphaeralcea and related genera. These include the ground-nesting bees Diadasia diminuta, D. lutzi, and Colletes sphaeralcea. The Diadasia are proficient and dedicated pollinators, and have been found colonizing trial plots on research farms (...

Assessing relative abundance and reproductive success of shrubsteppe raptors

USGS Publications Warehouse

Lehman, Robert N.; Carpenter, L.B.; Steenhof, Karen; Kochert, Michael N.

1998-01-01

From 1991-1994, we quantified relative abundance and reproductive success of the Ferruginous Hawk (Buteo regalis), Northern Harrier (Circus cyaneus), Burrowing Owl (Speotytoc unicularia), and Short-eared Owl (Asio flammeus) on the shrubsteppe plateaus (benchlands) in and near the Snake River Birds of Prey National Conservation Area in southwestern Idaho. To assess relative abundance, we searched randomly selected plots using four sampling methods: point counts, line transects, and quadrats of two sizes. On a persampling-effort basis, transects were slightly more effective than point counts and quadrats for locating raptor nests (3.4 pairs detected/100 h of effort vs. 2.2-3.1 pairs). Random sampling using quadrats failed to detect a Short-eared Owl population increase from 1993 to 1994. To evaluate nesting success, we tried to determine reproductive outcome for all nesting attempts located during random, historical, and incidental nest searches. We compared nesting success estimates based on all nesting attempts, on attempts found during incubation, and the Mayfield model. Most pairs used to evaluate success were pairs found incidentally. Visits to historical nesting areas yielded the highest number of pairs per sampling effort (14.6/100 h), but reoccupancy rates for most species decreased through time. Estimates based on all attempts had the highest sample sizes but probably overestimated success for all species except the Ferruginous Hawk. Estimates of success based on nesting attempts found during incubation had the lowest sample sizes. All three methods yielded biased nesting snccess estimates for the Northern Harrier and Short-eared Owl. The estimate based on pairs found during incubation probably provided the least biased estimate for the Burrowing Owl. Assessments of nesting success were hindered by difficulties in confirming egg laying and nesting success for all species except the Ferruginous hawk.

The Phasor Approach to Fluorescence Lifetime Imaging Analysis

PubMed Central

Digman, Michelle A.; Caiolfa, Valeria R.; Zamai, Moreno; Gratton, Enrico

2008-01-01

Changing the data representation from the classical time delay histogram to the phasor representation provides a global view of the fluorescence decay at each pixel of an image. In the phasor representation we can easily recognize the presence of different molecular species in a pixel or the occurrence of fluorescence resonance energy transfer. The analysis of the fluorescence lifetime imaging microscopy (FLIM) data in the phasor space is done observing clustering of pixels values in specific regions of the phasor plot rather than by fitting the fluorescence decay using exponentials. The analysis is instantaneous since is not based on calculations or nonlinear fitting. The phasor approach has the potential to simplify the way data are analyzed in FLIM, paving the way for the analysis of large data sets and, in general, making the FLIM technique accessible to the nonexpert in spectroscopy and data analysis. PMID:17981902

DOE Office of Scientific and Technical Information (OSTI.GOV)

Khalid, Farah F.; Deptuch, Grzegorz; Shenai, Alpana

Monolithic Active Matrix with Binary Counters (MAMBO) is a counting ASIC designed for detecting and measuring low energy X-rays from 6-12 keV. Each pixel contains analogue functionality implemented with a charge preamplifier, CR-RC{sup 2} shaper and a baseline restorer. It also contains a window comparator which can be trimmed by 4 bit DACs to remove systematic offsets. The hits are registered by a 12 bit ripple counter which is reconfigured as a shift register to serially output the data from the entire ASIC. Each pixel can be tested individually. Two diverse approaches have been used to prevent coupling between themore » detector and electronics in MAMBO III and MAMBO IV. MAMBO III is a 3D ASIC, the bottom ASIC consists of diodes which are connected to the top ASIC using {mu}-bump bonds. The detector is decoupled from the electronics by physically separating them on two tiers and using several metal layers as a shield. MAMBO IV is a monolithic structure which uses a nested well approach to isolate the detector from the electronics. The ASICs are being fabricated using the SOI 0.2 {micro}m OKI process, MAMBO III is 3D bonded at T-Micro and MAMBO IV nested well structure was developed in collaboration between OKI and Fermilab.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Khalid, Farah; Deptuch, Grzegorz; Shenai, Alpana

Monolithic Active Matrix with Binary Counters (MAMBO) is a counting ASIC designed for detecting and measuring low energy X-rays from 6-12keV. Each pixel contains analogue functionality implemented with a charge preamplifier, CR-RC{sup 2} shaper and a baseline restorer. It also contains a window comparator which can be trimmed by 4 bit DACs to remove systematic offsets. The hits are registered by a 12 bit ripple counter which is reconfigured as a shift register to serially output the data from the entire ASIC. Each pixel can be tested individually. Two diverse approaches have been used to prevent coupling between the detectormore » and electronics in MAMBO III and MAMBO IV. MAMBO III is a 3D ASIC, the bottom ASIC consists of diodes which are connected to the top ASIC using {mu}-bump bonds. The detector is decoupled from the electronics by physically separating them on two tiers and using several metal layers as a shield. MAMBO IV is a monolithic structure which uses a nested well approach to isolate the detector from the electronics. The ASICs are being fabricated using the SOI 0.2 {micro}m OKI process, MAMBO III is 3D bonded at T-Micro and MAMBO IV nested well structure was developed in collaboration between OKI and Fermilab.« less

Avoiding Stair-Step Artifacts in Image Registration for GOES-R Navigation and Registration Assessment

NASA Technical Reports Server (NTRS)

Grycewicz, Thomas J.; Tan, Bin; Isaacson, Peter J.; De Luccia, Frank J.; Dellomo, John

2016-01-01

In developing software for independent verification and validation (IVV) of the Image Navigation and Registration (INR) capability for the Geostationary Operational Environmental Satellite R Series (GOES-R) Advanced Baseline Imager (ABI), we have encountered an image registration artifact which limits the accuracy of image offset estimation at the subpixel scale using image correlation. Where the two images to be registered have the same pixel size, subpixel image registration preferentially selects registration values where the image pixel boundaries are close to lined up. Because of the shape of a curve plotting input displacement to estimated offset, we call this a stair-step artifact. When one image is at a higher resolution than the other, the stair-step artifact is minimized by correlating at the higher resolution. For validating ABI image navigation, GOES-R images are correlated with Landsat-based ground truth maps. To create the ground truth map, the Landsat image is first transformed to the perspective seen from the GOES-R satellite, and then is scaled to an appropriate pixel size. Minimizing processing time motivates choosing the map pixels to be the same size as the GOES-R pixels. At this pixel size image processing of the shift estimate is efficient, but the stair-step artifact is present. If the map pixel is very small, stair-step is not a problem, but image correlation is computation-intensive. This paper describes simulation-based selection of the scale for truth maps for registering GOES-R ABI images.

Effects of seagulls on ecosystem respiration, soil nitrogen and vegetation cover on a pristine volcanic island, Surtsey, Iceland

NASA Astrophysics Data System (ADS)

Sigurdsson, B. D.; Magnusson, B.

2010-03-01

When Surtsey rose from the North Atlantic Ocean south of Iceland in 1963, it became a unique natural laboratory on how organisms colonize volcanic islands and form ecosystems with contrasting structures and functions. In July, 2004, ecosystem respiration rate (Re), soil properties and surface cover of vascular plants were measured in 21 permanent research plots distributed among the juvenile communities of the island. The plots were divided into two main groups, inside and outside a seagull (Larus spp.) colony established on the island. Vegetation cover of the plots was strongly related to the density of gull nests. Occurrence of nests and increased vegetation cover also coincided with significant increases in Re, soil carbon, nitrogen and C:N ratio, and with significant reductions in soil pH and soil temperatures. Temperature sensitivity (Q10 value) of Re was determined as 5.3. When compared at constant temperature the Re was found to be 59 times higher within the seagull colony, similar to the highest fluxes measured in drained wetlands or agricultural fields in Iceland. The amount of soil nitrogen, mainly brought onto the island by the seagulls, was the critical factor that most influenced ecosystem fluxes and vegetation development on Surtsey. The present study shows how ecosystem activity can be enhanced by colonization of animals that transfer resources from a nearby ecosystem.

Reforestation Sites Show Similar and Nested AMF Communities to an Adjacent Pristine Forest in a Tropical Mountain Area of South Ecuador

PubMed Central

Haug, Ingeborg; Setaro, Sabrina; Suárez, Juan Pablo

2013-01-01

Arbuscular mycorrhizae are important for growth and survival of tropical trees. We studied the community of arbuscular mycorrhizal fungi in a tropical mountain rain forest and in neighbouring reforestation plots in the area of Reserva Biológica San Francisco (South Ecuador). The arbuscular mycorrhizal fungi were analysed with molecular methods sequencing part of the 18 S rDNA. The sequences were classified as Operational Taxonomic Units (OTUs). We found high fungal species richness with OTUs belonging to Glomerales, Diversisporales and Archaeosporales. Despite intensive sampling, the rarefaction curves are still unsaturated for the pristine forest and the reforestation plots. The communities consisted of few frequent and many rare species. No specific interactions are recognizable. The plant individuals are associated with one to ten arbuscular mycorrhizal fungi and mostly with one to four. The fungal compositions associated with single plant individuals show a great variability and variety within one plant species. Planted and naturally occurring plants show high similarities in their fungal communities. Pristine forest and reforestation plots showed similar richness, similar diversity and a significantly nested structure of plant-AMF community. The results indicate that small-scale fragmentation presently found in this area has not destroyed the natural AMF community, at least yet. Thus, the regeneration potential of natural forest vegetation at the tested sites is not inhibited by a lack of appropriate mycobionts. PMID:23671682

Disentangling endogenous versus exogenous pattern formation in spatial ecology: a case study of the ant Azteca sericeasur in southern Mexico.

PubMed

Li, Kevin; Vandermeer, John H; Perfecto, Ivette

2016-05-01

Spatial patterns in ecology can be described as reflective of environmental heterogeneity (exogenous), or emergent from dynamic relationships between interacting species (endogenous), but few empirical studies focus on the combination. The spatial distribution of the nests of Azteca sericeasur, a keystone tropical arboreal ant, is thought to form endogenous spatial patterns among the shade trees of a coffee plantation through self-regulating interactions with controlling agents (i.e. natural enemies). Using inhomogeneous point process models, we found evidence for both types of processes in the spatial distribution of A. sericeasur. Each year's nest distribution was determined mainly by a density-dependent relationship with the previous year's lagged nest density; but using a novel application of a Thomas cluster process to account for the effects of nest clustering, we found that nest distribution also correlated significantly with tree density in the later years of the study. This coincided with the initiation of agricultural intensification and tree felling on the coffee farm. The emergence of this significant exogenous effect, along with the changing character of the density-dependent effect of lagged nest density, provides clues to the mechanism behind a unique phenomenon observed in the plot, that of an increase in nest population despite resource limitation in nest sites. Our results have implications in coffee agroecological management, as this system provides important biocontrol ecosystem services. Further research is needed, however, to understand the effective scales at which these relationships occur.

Effect of manmade pixels on the inherent dimension of natural material distributions

NASA Astrophysics Data System (ADS)

Schlamm, Ariel; Messinger, David; Basener, William

2009-05-01

The inherent dimension of hyperspectral data may be a useful metric for discriminating between the presence of manmade and natural materials in a scene without reliance on spectral signatures take from libraries. Previously, a simple geometric method for approximating the inherent dimension was introduced along with results from application to single material clusters. This method uses an estimate of the slope from a graph based on the point density estimation in the spectral space. Other information can be gathered from the plot which may aid in the discrimination between manmade and natural materials. In order to use these measures to differentiate between the two material types, the effect of the inclusion of manmade pixels on the phenomenology of the background distribution must be evaluated. Here, a procedure for injecting manmade pixels into a natural region of a scene is discussed. The results of dimension estimation on natural scenes with varying amounts of manmade pixels injected are presented here, indicating that these metrics can be sensitive to the presence of manmade phenomenology in an image.

Using classified Landsat Thematic Mapper data for stratification in a statewide forest inventory

Treesearch

Mark H. Hansen; Daniel G. Wendt

2000-01-01

The 1998 Indiana/Illinois forest inventory (USDA Forest Service, Forest Inventory and Analysis (FIA)) used Landsat Thematic Mapper (TM) data for stratification. Classified images made by the National Gap Analysis Program (GAP) stratified FIA plots into four classes (nonforest, nonforest/ forest, forest/nonforest, and forest) based on a two pixel forest edge buffer zone...

Using Classified Landsat Thematic Mapper Data for Stratification in a Statewide Forest Inventory

Treesearch

Mark H. Hansen; Daniel G. Wendt

2000-01-01

The 1998 Indiana/Illinois forest inventory (USDA Forest Service, Forest Inventory and Analysis (FIA)) used Landsat Thematic Mapper (TM} data for stratification. Classified images made by the National Gap Analysis Program (GAP) stratified FIA plots into four classes (nonforest, nonforest/forest, forest/nonforest, and forest) based on a two pixel forest edge buffer zone...

Effects of climate and exurban development on nest predation and predator presence in the southern Appalachian Mountains (USA).

PubMed

Lumpkin, Heather A; Pearson, Scott M; Turner, Monica G

2012-08-01

In the eastern United States, land-use and climate change have likely contributed to declines in the abundance of Neotropical migrant birds that occupy forest interiors, but the mechanisms are not well understood. We conducted a nest-predation experiment in southern Appalachian Mountain forests (North Carolina, U.S.A.) during the 2009 and 2010 breeding seasons to determine the effects of exurban development and temperature on predator presence and the average number of days until eggs in an artificial nest were disturbed by predators. We baited artificial nests with quail (Excalfactoria chinensi) eggs and monitored them for 18 days. We used clay eggs, track plates, and motion-triggered cameras to detect and identify nest predators. The average number of days a nest was undisturbed decreased as mean temperature increased and, to a lesser extent, as the density of buildings increased. Nests on the ground were more often depredated than those in trees, likely due to increased predation by opossum (Didelphis virginiana) and other carnivores. Raccoons (Procyon lotor), opossums, corvids (Corvus brachyrhynchos and Cyanocitta cristata), chipmunks (Tamias striatus), black bears (Ursus americanus), and domestic cats (Felis catus) were the most commonly detected predators. Presence of these predators did not vary as a function of mean temperature. Domestic cats and corvids were detected more frequently in plots with high rather than low densities of buildings. Forest-interior specialists and Neotropical migrants often nest in cool, high-elevation areas with low housing density. These bird species, especially those that nest on the ground, may be most vulnerable to increased nest predation if temperature and exurban development increase at higher elevations as anticipated. ©2012 Society for Conservation Biology.

Change of spatial information under rescaling: A case study using multi-resolution image series

NASA Astrophysics Data System (ADS)

Chen, Weirong; Henebry, Geoffrey M.

Spatial structure in imagery depends on a complicated interaction between the observational regime and the types and arrangements of entities within the scene that the image portrays. Although block averaging of pixels has commonly been used to simulate coarser resolution imagery, relatively little attention has been focused on the effects of simple rescaling on spatial structure and the explanation and a possible solution to the problem. Yet, if there are significant differences in spatial variance between rescaled and observed images, it may affect the reliability of retrieved biogeophysical quantities. To investigate these issues, a nested series of high spatial resolution digital imagery was collected at a research site in eastern Nebraska in 2001. An airborne Kodak DCS420IR camera acquired imagery at three altitudes, yielding nominal spatial resolutions ranging from 0.187 m to 1 m. The red and near infrared (NIR) bands of the co-registered image series were normalized using pseudo-invariant features, and the normalized difference vegetation index (NDVI) was calculated. Plots of grain sorghum planted in orthogonal crop row orientations were extracted from the image series. The finest spatial resolution data were then rescaled by averaging blocks of pixels to produce a rescaled image series that closely matched the spatial resolution of the observed image series. Spatial structures of the observed and rescaled image series were characterized using semivariogram analysis. Results for NDVI and its component bands show, as expected, that decreasing spatial resolution leads to decreasing spatial variability and increasing spatial dependence. However, compared to the observed data, the rescaled images contain more persistent spatial structure that exhibits limited variation in both spatial dependence and spatial heterogeneity. Rescaling via simple block averaging fails to consider the effect of scene object shape and extent on spatial information. As the features portrayed by pixels are equally weighted regardless of the shape and extent of the underlying scene objects, the rescaled image retains more of the original spatial information than would occur through direct observation at a coarser sensor spatial resolution. In contrast, for the observed images, due to the effect of the modulation transfer function (MTF) of the imaging system, high frequency features like edges are blurred or lost as the pixel size increases, resulting in greater variation in spatial structure. Successive applications of a low-pass spatial convolution filter are shown to mimic a MTF. Accordingly, it is recommended that such a procedure be applied prior to rescaling by simple block averaging, if insufficient image metadata exist to replicate the net MTF of the imaging system, as might be expected in land cover change analysis studies using historical imagery.

Nest predation and circulating corticosterone levels within and among species

USGS Publications Warehouse

Fontaine, Joseph J.; Arriero, Elena; Schwabl, Hubert; Martin, Thomas E.

2011-01-01

Variation in the risk of predation to offspring can influence the expression of reproductive strategies both within and among species. Appropriate expression of reproductive strategies in environments that differ in predation risk can have clear advantages for fitness. Although adult-predation risk appears to influence glucocorticosteroid levels, leading to changes in behavioral and life-history strategies, the influence of offspring-predation risk on adult glucocorticosteroid levels remains unclear. We compared total baseline corticosterone concentrations in Gray-headed Juncos (Junco hyemalis dorsalis) nesting on plots with and without experimentally reduced risk of nest predation. Despite differences in risk between treatments, we failed to find differences in total baseline corticosterone concentrations. When we examined corticosterone concentrations across a suite of sympatric species, however, higher risk of nest predation correlated with higher total baseline corticosterone levels. As found previously, total baseline corticosterone was negatively correlated with body condition and positively correlated with date of sampling. However, we also found that corticosterone levels increased seasonally, independent of stage of breeding. Nest predation can alter the expression of birds' reproductive strategies, but our findings suggest that total baseline corticosterone is not the physiological mechanism regulating these responses.

Nest predation and circulating corticosterone levels within and among species

USGS Publications Warehouse

Fontaine, J.J.; Arriero, E.; Schwabl, H.; Martin, T.E.

2011-01-01

Variation in the risk of predation to offspring can influence the expression of reproductive strategies both within and among species. Appropriate expression of reproductive strategies in environments that differ in predation risk can have clear advantages for fitness. Although adult-predation risk appears to influence glucocorticosteroid levels, leading to changes in behavioral and life-history strategies, the influence of offspring-predation risk on adult glucocorticosteroid levels remains unclear. We compared total baseline corticosterone concentrations in Gray-headed Juncos (Junco hyemalis dorsalis) nesting on plots with and without experimentally reduced risk of nest predation. Despite differences in risk between treatments, we failed to find differences in total baseline corticosterone concentrations. When we examined corticosterone concentrations across a suite of sympatric species, however, higher risk of nest predation correlated with higher total baseline corticosterone levels. As found previously, total baseline corticosterone was negatively correlated with body condition and positively correlated with date of sampling. However, we also found that corticosterone levels increased seasonally, independent of stage of breeding. Nest predation can alter the expression of birds' reproductive strategies, but our findings suggest that total baseline corticosterone is not the physiological mechanism regulating these responses. ?? The Cooper Ornithological Society 2011.

Video Image Stabilization and Registration

NASA Technical Reports Server (NTRS)

Hathaway, David H. (Inventor); Meyer, Paul J. (Inventor)

2002-01-01

A method of stabilizing and registering a video image in multiple video fields of a video sequence provides accurate determination of the image change in magnification, rotation and translation between video fields, so that the video fields may be accurately corrected for these changes in the image in the video sequence. In a described embodiment, a key area of a key video field is selected which contains an image which it is desired to stabilize in a video sequence. The key area is subdivided into nested pixel blocks and the translation of each of the pixel blocks from the key video field to a new video field is determined as a precursor to determining change in magnification, rotation and translation of the image from the key video field to the new video field.

Video Image Stabilization and Registration

NASA Technical Reports Server (NTRS)

Hathaway, David H. (Inventor); Meyer, Paul J. (Inventor)

2003-01-01

A method of stabilizing and registering a video image in multiple video fields of a video sequence provides accurate determination of the image change in magnification, rotation and translation between video fields, so that the video fields may be accurately corrected for these changes in the image in the video sequence. In a described embodiment, a key area of a key video field is selected which contains an image which it is desired to stabilize in a video sequence. The key area is subdivided into nested pixel blocks and the translation of each of the pixel blocks from the key video field to a new video field is determined as a precursor to determining change in magnification, rotation and translation of the image from the key video field to the new video field.

WE-G-204-06: Grid-Line Artifact Minimization for High Resolution Detectors Using Iterative Residual Scatter Correction

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rana, R; Bednarek, D; Rudin, S

2015-06-15

Purpose: Anti-scatter grid-line artifacts are more prominent for high-resolution x-ray detectors since the fraction of a pixel blocked by the grid septa is large. Direct logarithmic subtraction of the artifact pattern is limited by residual scattered radiation and we investigate an iterative method for scatter correction. Methods: A stationary Smit-Rοntgen anti-scatter grid was used with a high resolution Dexela 1207 CMOS X-ray detector (75 µm pixel size) to image an artery block (Nuclear Associates, Model 76-705) placed within a uniform head equivalent phantom as the scattering source. The image of the phantom was divided by a flat-field image obtained withoutmore » scatter but with the grid to eliminate grid-line artifacts. Constant scatter values were subtracted from the phantom image before dividing by the averaged flat-field-with-grid image. The standard deviation of pixel values for a fixed region of the resultant images with different subtracted scatter values provided a measure of the remaining grid-line artifacts. Results: A plot of the standard deviation of image pixel values versus the subtracted scatter value shows that the image structure noise reaches a minimum before going up again as the scatter value is increased. This minimum corresponds to a minimization of the grid-line artifacts as demonstrated in line profile plots obtained through each of the images perpendicular to the grid lines. Artifact-free images of the artery block were obtained with the optimal scatter value obtained by this iterative approach. Conclusion: Residual scatter subtraction can provide improved grid-line artifact elimination when using the flat-field with grid “subtraction” technique. The standard deviation of image pixel values can be used to determine the optimal scatter value to subtract to obtain a minimization of grid line artifacts with high resolution x-ray imaging detectors. This study was supported by NIH Grant R01EB002873 and an equipment grant from Toshiba Medical Systems Corp.« less

Methodological considerations of terrestrial laser scanning for vegetation monitoring in the sagebrush steppe

USGS Publications Warehouse

Anderson, Kyle E.; Glenn, Nancy; Spaete, Lucas; Shinneman, Douglas; Pilliod, David S.; Arkle, Robert; McIlroy, Susan; Derryberry, DeWayne R.

2017-01-01

Terrestrial laser scanning (TLS) provides fast collection of high-definition structural information, making it a valuable field instrument to many monitoring applications. A weakness of TLS collections, especially in vegetation, is the occurrence of unsampled regions in point clouds where the sensor’s line-of-sight is blocked by intervening material. This problem, referred to as occlusion, may be mitigated by scanning target areas from several positions, increasing the chance that any given area will fall within the scanner’s line-of-sight from at least one position. Because TLS collections are often employed in remote regions where the scope of sampling is limited by logistical factors such as time and battery power, it is important to design field protocols which maximize efficiency and support increased quantity and quality of the data collected. This study informs researchers and practitioners seeking to optimize TLS sampling methods for vegetation monitoring in dryland ecosystems through three analyses. First, we quantify the 2D extent of occluded regions based on the range from single scan positions. Second, we measure the efficacy of additional scan positions on the reduction of 2D occluded regions (area) using progressive configurations of scan positions in 1 ha plots. Third, we test the reproducibility of 3D sampling yielded by a 5-scan/ha sampling methodology using redundant sets of scans. Analyses were performed using measurements at analysis scales of 5 to 50 cm across the 1-ha plots, and we considered plots in grass and shrub-dominated communities separately. In grass-dominated plots, a center-scan configuration and 5 cm pixel size sampled at least 90% of the area up to 18 m away from the scanner. In shrub-dominated plots, sampling at least 90% of the area was only achieved within a distance of 12 m. We found that 3 and 5 scans/ha are needed to sample at least ~ 70% of the total area (1 ha) in the grass and shrub-dominated plots, respectively, using 5 cm pixels to measure sampling presence-absence. The reproducibility of 3D sampling provided by a 5 position scan layout across 1-ha plots was 50% (shrub) and 70% (grass) using a 5-cm voxel size, whereas at the 50-cm voxel scale, reproducibility of sampling was nearly 100% for all plot types. Future studies applying TLS in similar dryland environments for vegetation monitoring may use our results as a guide to efficiently achieve sampling coverage and reproducibility in datasets.

Methodological considerations of terrestrial laser scanning for vegetation monitoring in the sagebrush steppe.

PubMed

Anderson, Kyle E; Glenn, Nancy F; Spaete, Lucas P; Shinneman, Douglas J; Pilliod, David S; Arkle, Robert S; McIlroy, Susan K; Derryberry, DeWayne R

2017-10-23

Terrestrial laser scanning (TLS) provides fast collection of high-definition structural information, making it a valuable field instrument to many monitoring applications. A weakness of TLS collections, especially in vegetation, is the occurrence of unsampled regions in point clouds where the sensor's line-of-sight is blocked by intervening material. This problem, referred to as occlusion, may be mitigated by scanning target areas from several positions, increasing the chance that any given area will fall within the scanner's line-of-sight from at least one position. Because TLS collections are often employed in remote regions where the scope of sampling is limited by logistical factors such as time and battery power, it is important to design field protocols which maximize efficiency and support increased quantity and quality of the data collected. This study informs researchers and practitioners seeking to optimize TLS sampling methods for vegetation monitoring in dryland ecosystems through three analyses. First, we quantify the 2D extent of occluded regions based on the range from single scan positions. Second, we measure the efficacy of additional scan positions on the reduction of 2D occluded regions (area) using progressive configurations of scan positions in 1 ha plots. Third, we test the reproducibility of 3D sampling yielded by a 5-scan/ha sampling methodology using redundant sets of scans. Analyses were performed using measurements at analysis scales of 5 to 50 cm across the 1-ha plots, and we considered plots in grass and shrub-dominated communities separately. In grass-dominated plots, a center-scan configuration and 5 cm pixel size sampled at least 90% of the area up to 18 m away from the scanner. In shrub-dominated plots, sampling at least 90% of the area was only achieved within a distance of 12 m. We found that 3 and 5 scans/ha are needed to sample at least ~ 70% of the total area (1 ha) in the grass and shrub-dominated plots, respectively, using 5 cm pixels to measure sampling presence-absence. The reproducibility of 3D sampling provided by a 5 position scan layout across 1-ha plots was 50% (shrub) and 70% (grass) using a 5-cm voxel size, whereas at the 50-cm voxel scale, reproducibility of sampling was nearly 100% for all plot types. Future studies applying TLS in similar dryland environments for vegetation monitoring may use our results as a guide to efficiently achieve sampling coverage and reproducibility in datasets.

The effects of fire on ant trophic assemblage and sex allocation

PubMed Central

Caut, Stephane; Jowers, Michael J; Arnan, Xavier; Pearce-Duvet, Jessica; Rodrigo, Anselm; Cerda, Xim; Boulay, Raphaël R

2014-01-01

Fire plays a key role in ecosystem dynamics worldwide, altering energy flows and species community structure and composition. However, the functional mechanisms underlying these effects are not well understood. Many ground-dwelling animal species can shelter themselves from exposure to heat and therefore rarely suffer direct mortality. However, fire-induced alterations to the environment may change a species' relative trophic level within a food web and its mode of foraging. We assessed how fire could affect ant resource utilization at different scales in a Mediterranean forest. First, we conducted isotopic analyses on entire ant species assemblages and their potential food resources, which included plants and other arthropods, in burned and unburned plots 1 year postfire. Second, we measured the production of males and females by nests of a fire-resilient species, Aphaenogaster gibbosa, and analyzed the differences in isotopic values among workers, males, and females to test whether fire constrained resource allocation. We found that, in spite of major modifications in biotic and abiotic conditions, fire had little impact on the relative trophic position of ant species. The studied assemblage was composed of species with a wide array of diets. They ranged from being mostly herbivorous to completely omnivorous, and a given species' trophic level was the same in burned and unburned plots. In A. gibbosa nests, sexuals had greater δ15N values than workers in both burned and unburned plots, which suggests that the former had a more protein-rich diet than the latter. Fire also appeared to have a major effect on A. gibbosa sex allocation: The proportion of nests that produced male brood was greater on burned zones, as was the mean number of males produced per nest with the same reproductive investment. Our results show that generalist ants with relatively broad diets maintained a constant trophic position, even following a major disturbance like fire. However, the dramatically reduced production of females on burned zones compared to unburned zones 1 year postfire may result in considerably reduced recruitment of new colonies in the mid to long term, which could yield genetic bottlenecks and founder effects. Our study paves the way for future functional analyses of fire-induced modifications in ant populations and communities. PMID:24455159

Variation in spatial scale of competing polydomous twig-nesting ants in coffee agroecosystems

PubMed Central

Mathis, Kaitlyn A.; Philpott, Stacy M.; Ramirez, Santiago R.

2016-01-01

Arboreal ants are both highly diverse and ecologically dominant in the tropics. This ecologically important group is particularly useful in ongoing efforts to understand processes that regulate species diversity and coexistence. Our study addresses how polydomy can influence patterns of nest occupation in competing arboreal ants. We examined the spatial structure of nest occupation (nest distance, abundance and density) in three polydomous co-occurring twig-nesting ant species (Pseudomyrmex simplex, P. ejectus and P. PSW-53) by mapping twigs occupied by ants from each species within plots in our study site. We then used two colony structure estimators (intraspecific aggression and cuticular hydrocarbon variation) to determine the relative degree of polydomy for each species. All work was conducted in coffee agroforests in Chiapas, Mexico. Our results revealed that the two species with highest abundance and nest density were also highly polydomous, where both species had either single or multiple non-aggressive colonies occupying nests on a large spatial scale (greater than the hectare level). Our results also indicate that the species with the lowest abundance and density is less polydomous, occupying several overlapping and territorial colonies at the hectare level in which multiple colonies never co-occur on the same host plant. These results contribute evidence that successful coexistence and highly polydomous colony structure may allow ants, through reduced intraspecific aggression, to successfully occupy more nests more densely than ant species that have multiple territorial colonies. Furthermore our study highlights the importance of considering intraspecific interactions when examining community assembly of ants. PMID:27795573

Habitat use by Swainson's Warblers in a managed bottomland forest

USGS Publications Warehouse

Somershoe, S.G.; Hudman, S.P.; Chandler, C.R.

2003-01-01

The Swainson's Warbler (Limnothlypis swainsonii) is a locally distributed and relatively uncommon Neotropical migrant songbird that breeds in the bottomland forests of the southeastern United States and spends the nonbreeding season in the Caribbean Basin. Populations of Swainson's Warblers have declined during recent decades as bottomland forests have come under increasingly intensive management and large areas have been converted to other land uses. We examined the habitat around song perches used by male Swainson's Warblers at Big Hammock Wildlife Management Area, a managed bottomland forest along the Altamaha River in Tattnall County, Georgia. We quantified 20 features of habitat structure in areas occupied by Swainson's Warblers (occupied plots) and two sets of controls: unoccupied plots adjacent to occupied plots (adjacent control plots) and unoccupied plots throughout the management area (general control plots). Occupied plots and adjacent control plots both differed in structure from the general control plots. We detected no significant differences, however, in vegetation structure between occupied plots and adjacent control plots. General control plots tended to have a greater number of trees, greater basal area, and a complete canopy, whereas occupied and adjacent control plots had high densities of small stems, cane, herbaceous ground cover, and leaf litter; this latter pattern is typical of documented Swainson's Warbler breeding habitat. Lack of significant differences in vegetation structure may be due to great variation in habitat structure around song perches, small sample size, or scarcity of Swainson's Warblers. Future research should focus on quantifying habitat characteristics around nest sites, song perches, and feeding areas. Our results suggest that management of bottomland habitats by thinning forests and encouraging regeneration of canebrakes is needed for successful conservation of Swainson's Warblers.

A Proposal for Phase 4 of the Forest Inventory and Analysis Program

Treesearch

Ronald E. McRoberts

2005-01-01

Maps of forest cover were constructed using observations from forest inventory plots, Landsat Thematic Mapper satellite imagery, and a logistic regression model. Estimates of mean proportion forest area and the variance of the mean were calculated for circular study areas with radii ranging from 1 km to 15 km. The spatial correlation among pixel predictions was...

Ganalyzer: A Tool for Automatic Galaxy Image Analysis

NASA Astrophysics Data System (ADS)

Shamir, Lior

2011-08-01

We describe Ganalyzer, a model-based tool that can automatically analyze and classify galaxy images. Ganalyzer works by separating the galaxy pixels from the background pixels, finding the center and radius of the galaxy, generating the radial intensity plot, and then computing the slopes of the peaks detected in the radial intensity plot to measure the spirality of the galaxy and determine its morphological class. Unlike algorithms that are based on machine learning, Ganalyzer is based on measuring the spirality of the galaxy, a task that is difficult to perform manually, and in many cases can provide a more accurate analysis compared to manual observation. Ganalyzer is simple to use, and can be easily embedded into other image analysis applications. Another advantage is its speed, which allows it to analyze ~10,000,000 galaxy images in five days using a standard modern desktop computer. These capabilities can make Ganalyzer a useful tool in analyzing large data sets of galaxy images collected by autonomous sky surveys such as SDSS, LSST, or DES. The software is available for free download at http://vfacstaff.ltu.edu/lshamir/downloads/ganalyzer, and the data used in the experiment are available at http://vfacstaff.ltu.edu/lshamir/downloads/ganalyzer/GalaxyImages.zip.

Fusion of GEDI, ICESAT2 & NISAR data for above ground biomass mapping in Sonoma County, California

NASA Astrophysics Data System (ADS)

Duncanson, L.; Simard, M.; Thomas, N. M.; Neuenschwander, A. L.; Hancock, S.; Armston, J.; Dubayah, R.; Hofton, M. A.; Huang, W.; Tang, H.; Marselis, S.; Fatoyinbo, T.

2017-12-01

Several upcoming NASA missions will collect data sensitive to forest structure (GEDI, ICESAT-2 & NISAR). The LiDAR and SAR data collected by these missions will be used in coming years to map forest aboveground biomass at various resolutions. This research focuses on developing and testing multi-sensor data fusion approaches in advance of these missions. Here, we present the first case study of a CMS-16 grant with results from Sonoma County, California. We simulate lidar and SAR datasets from GEDI, ICESAT-2 and NISAR using airborne discrete return lidar and UAVSAR data, respectively. GEDI and ICESAT-2 signals are simulated from high point density discrete return lidar that was acquired over the entire county in 2014 through a previous CMS project (Dubayah & Hurtt, CMS-13). NISAR is simulated from L-band UAVSAR data collected in 2014. These simulations are empirically related to 300 field plots of aboveground biomass as well as a 30m biomass map produced from the 2014 airborne lidar data. We model biomass independently for each simulated mission dataset and then test two fusion methods for County-wide mapping 1) a pixel based approach and 2) an object oriented approach. In the pixel-based approach, GEDI and ICESAT-2 biomass models are calibrated over field plots and applied in orbital simulations for a 2-year period of the GEDI and ICESAT-2 missions. These simulated samples are then used to calibrate UAVSAR data to produce a 0.25 ha map. In the object oriented approach, the GEDI and ICESAT-2 data are identical to the pixel-based approach, but calibrate image objects of similar L-band backscatter rather than uniform pixels. The results of this research demonstrate the estimated ability for each of these three missions to independently map biomass in a temperate, high biomass system, as well as the potential improvement expected through combining mission datasets.

The discriminant pixel approach: a new tool for the rational interpretation of GCxGC-MS chromatograms.

PubMed

Vial, Jérôme; Pezous, Benoît; Thiébaut, Didier; Sassiat, Patrick; Teillet, Béatrice; Cahours, Xavier; Rivals, Isabelle

2011-01-30

GCxGC is now recognized as the most suited analytical technique for the characterization of complex mixtures of volatile compounds; it is implemented worldwide in academic and industrial laboratories. However, in the frame of comprehensive analysis of non-target analytes, going beyond the visual examination of the color plots remains challenging for most users. We propose a strategy that aims at classifying chromatograms according to the chemical composition of the samples while determining the origin of the discrimination between different classes of samples: the discriminant pixel approach. After data pre-processing and time-alignment, the discriminatory power of each chromatogram pixel for a given class was defined as its correlation with the membership to this class. Using a peak finding algorithm, the most discriminant pixels were then linked to chromatographic peaks. Finally, crosschecking with mass spectrometry data enabled to establish relationships with compounds that could consequently be considered as candidate class markers. This strategy was applied to a large experimental data set of 145 GCxGC-MS chromatograms of tobacco extracts corresponding to three distinct classes of tobacco. Copyright © 2010 Elsevier B.V. All rights reserved.

Aperture Photometry Tool

NASA Astrophysics Data System (ADS)

Laher, Russ R.; Gorjian, Varoujan; Rebull, Luisa M.; Masci, Frank J.; Fowler, John W.; Helou, George; Kulkarni, Shrinivas R.; Law, Nicholas M.

2012-07-01

Aperture Photometry Tool (APT) is software for astronomers and students interested in manually exploring the photometric qualities of astronomical images. It is a graphical user interface (GUI) designed to allow the image data associated with aperture photometry calculations for point and extended sources to be visualized and, therefore, more effectively analyzed. The finely tuned layout of the GUI, along with judicious use of color-coding and alerting, is intended to give maximal user utility and convenience. Simply mouse-clicking on a source in the displayed image will instantly draw a circular or elliptical aperture and sky annulus around the source and will compute the source intensity and its uncertainty, along with several commonly used measures of the local sky background and its variability. The results are displayed and can be optionally saved to an aperture-photometry-table file and plotted on graphs in various ways using functions available in the software. APT is geared toward processing sources in a small number of images and is not suitable for bulk processing a large number of images, unlike other aperture photometry packages (e.g., SExtractor). However, APT does have a convenient source-list tool that enables calculations for a large number of detections in a given image. The source-list tool can be run either in automatic mode to generate an aperture photometry table quickly or in manual mode to permit inspection and adjustment of the calculation for each individual detection. APT displays a variety of useful graphs with just the push of a button, including image histogram, x and y aperture slices, source scatter plot, sky scatter plot, sky histogram, radial profile, curve of growth, and aperture-photometry-table scatter plots and histograms. APT has many functions for customizing the calculations, including outlier rejection, pixel “picking” and “zapping,” and a selection of source and sky models. The radial-profile-interpolation source model, which is accessed via the radial-profile-plot panel, allows recovery of source intensity from pixels with missing data and can be especially beneficial in crowded fields.

Moderate-resolution data and gradient nearest neighbor imputation for regional-national risk assessment

Treesearch

Kenneth B. Jr. Pierce; C. Kenneth Brewer; Janet L. Ohmann

2010-01-01

This study was designed to test the feasibility of combining a method designed to populate pixels with inventory plot data at the 30-m scale with a new national predictor data set. The new national predictor data set was developed by the USDA Forest Service Remote Sensing Applications Center (hereafter RSAC) at the 250-m scale. Gradient Nearest Neighbor (GNN)...

Seabird nest counts: A test of monitoring metrics using Red-tailed Tropicbirds

USGS Publications Warehouse

Seavy, N.E.; Reynolds, M.H.

2009-01-01

Counts of nesting birds are often used to monitor the abundance of breeding pairs at colonies. Mean incubation counts (MICs) are counts of nests with eggs at intervals that correspond to the mean incubation period of a species. The sum of all counts during the nesting season (MICtotal) and the highest single count during the season (MICmax) are metrics that can be generated from this method. However, the utility of these metrics as measures of the number of breeding pairs has not been well tested. We used two approaches to evaluate the bias and precision of MIC metrics for quantifying annual variation in the number of breeding Red-tailed Tropicbirds (Phaethon rubricauda) nesting on two islands in the Papahnaumokukea Marine National Monument in the northwest Hawaiian Islands. First, we used data from nest plots with individually marked birds to generate simulated MIC metrics that we compared to the known number of nesting individuals. The MICtotal overestimated the number of pairs by about 5%, whereas the MICmax underestimated the number of pairs by about 60%. However, both metrics exhibited similar precision. Second, we used a 12-yr time series of island-wide MICs to compare estimates of temporal trend and annual variation using the MICmax and MICtotal. The 95% confidence intervals for the trend estimates were overlapping and the residual standard errors for the two metrics were similar. Our results suggest that both metrics offered similar precision for indices of breeding pairs of Red-tailed Tropicbirds, but that MICtotal was more accurate. ?? 2009 Association of Field Ornithologists.

OpenMP Parallelization and Optimization of Graph-based Machine Learning Algorithms

DTIC Science & Technology

2016-05-01

composed of hyper - spectral video sequences recording the release of chemical plumes at the Dugway Proving Ground. We use the 329 frames of the...video. Each frame is a hyper - spectral image with dimension 128 × 320 × 129, where 129 is the dimension of the channel of each pixel. The total number of...j=1 . Then we use the nested for- loop to calculate the values of WXY by the formula (1). We then put the corresponding value in an array which

The genetic architecture of maize height.

PubMed

Peiffer, Jason A; Romay, Maria C; Gore, Michael A; Flint-Garcia, Sherry A; Zhang, Zhiwu; Millard, Mark J; Gardner, Candice A C; McMullen, Michael D; Holland, James B; Bradbury, Peter J; Buckler, Edward S

2014-04-01

Height is one of the most heritable and easily measured traits in maize (Zea mays L.). Given a pedigree or estimates of the genomic identity-by-state among related plants, height is also accurately predictable. But, mapping alleles explaining natural variation in maize height remains a formidable challenge. To address this challenge, we measured the plant height, ear height, flowering time, and node counts of plants grown in >64,500 plots across 13 environments. These plots contained >7300 inbreds representing most publically available maize inbreds in the United States and families of the maize Nested Association Mapping (NAM) panel. Joint-linkage mapping of quantitative trait loci (QTL), fine mapping in near isogenic lines (NILs), genome-wide association studies (GWAS), and genomic best linear unbiased prediction (GBLUP) were performed. The heritability of maize height was estimated to be >90%. Mapping NAM family-nested QTL revealed the largest explained 2.1 ± 0.9% of height variation. The effects of two tropical alleles at this QTL were independently validated by fine mapping in NIL families. Several significant associations found by GWAS colocalized with established height loci, including brassinosteroid-deficient dwarf1, dwarf plant1, and semi-dwarf2. GBLUP explained >80% of height variation in the panels and outperformed bootstrap aggregation of family-nested QTL models in evaluations of prediction accuracy. These results revealed maize height was under strong genetic control and had a highly polygenic genetic architecture. They also showed that multiple models of genetic architecture differing in polygenicity and effect sizes can plausibly explain a population's variation in maize height, but they may vary in predictive efficacy.

The Effects of Different Tillage Systems on Soil Hydrology and Erosion in Southeastern Brazil

NASA Astrophysics Data System (ADS)

Bertolino, A. V. F. A.; Fernandes, N. F.; Souza, A. P.; Miranda, J. P.; Rocha, M. L.

2009-04-01

Conventional tillage usually imposes a variety of modifications on soil properties that can lead to important changes in the type and magnitude of the hydrological processes that take place at the upper portion of the soil profile. Plough pan formation, for example, is considered to be an important consequence of conventional tillage practices in southeastern Brazil, decreasing infiltration rates and contributing to soil erosion, especially in steep slopes. In order to characterize the changes in soil properties and soil hydrology due to the plough pan formation we carried out detailed investigations in two experimental plots in Paty do Alferes region, located in the hilly landscape of Serra do Mar in southeastern Brazil, close to Rio de Janeiro city. Farming activities are very important in this area, in particular the ones related to the tomato production. The local hilly topography with short and steep hillslopes, as well as an average annual rainfall of almost 2000 mm, favor surface runoff and the evolution of rill and gully erosion. The two runoff plots are 22m long by 4m wide and were installed side by side along a representative hillslope, both in terms of soil (Oxisol) and steepness. At the lower portion of each plot there is a collecting trough connected by a PVC pipe to a 500 and 1000 liters sediment storage boxes. Soil tillage treatments used in the two plots were: Conventional Tillage (CT), with one plowing using disc-type plow (about 18 cm depth) and one downhill tractor leveling, in addition to burning residues from previous planting; and Minimum Tillage (MT), which did not allow burning residues from previous planting and preserved a vegetative cover between plantation lines. Runoff and soil erosion measurements were carried out in both plots immediately after each rainfall event. In order to characterize soil water movements under the two tillage systems (CT and MT), 06 nests of tensiometers and 04 nests of Watermark sensors were installed in each plot. Based on previous studies in this area, suggesting that the plough pan develop at about 20cm depth, the soil water potential (SWP) sensors were installed, in each nest, at 15, 30 and 80 cm depths. Continuously readings in the 30 SWP sensors were made both at a daily and event basis (during some rainfall events) for 25 months. Rainfall was continuously measured in the area by an automatic rain-gauge (tipping bucket) installed close to the plots. In order to characterize changes is soil porosity, both total pore space and pore inter-connections, undisturbed soil blocks were collected for micromorphological analyses (0-10cm, 12-22cm and 25-35cm depths) at small trenches located at the upper parts of each plot. The results attested that soil under CT developed a plough pan layer at about 20 cm depth, showing a 44% decrease in total pore space from 0-10cm to 12-22cm depths, with a predominant network of isolated pores. In the MT plot, soil porosity is more homogeneous with depth, with a predominant network of larger and better connected pores. The results related to soil hydrology show that in many moments, both CT and MT, stay very close to saturation, both at 15 and 30 cm depth. Above the plough pan under CT, soils tend to saturate faster and to have a slower drainage rate than the ones under MT. Detailed SWP analyses made during rain events suggest that CT may favors lateral flows while soils under MT are draining. Soil erosion rates measured for individual events at CT are about four times greater than the ones observed at MT. The results observed in this study attest that conventional tillage (CT) in this area imposed important changes in soil structure, pore-size distribution and connectivity, as well as in soil infiltration, drainage and erosion.

Accuracy assessments and areal estimates using two-phase stratified random sampling, cluster plots, and the multivariate composite estimator

Treesearch

Raymond L. Czaplewski

2000-01-01

Consider the following example of an accuracy assessment. Landsat data are used to build a thematic map of land cover for a multicounty region. The map classifier (e.g., a supervised classification algorithm) assigns each pixel into one category of land cover. The classification system includes 12 different types of forest and land cover: black spruce, balsam fir,...

Heartrot fungi's role in creating picid nesting sites in living aspen

Treesearch

John H. Hart; D. L. Hart

2001-01-01

To determine the number of cavity-containing aspens in old-growth (>80 years), we counted the number of stems containing cavities in 132 0.02-ha plots in Wyoming. There were 8.7 cavities/ha of aspen type. At least 84% of the cavity stems were alive when the initial cavity was constructed; 60% were alive when examined. Fruiting bodies and Phellinus tremulae (a...

Temporal and spatial changes in soil carbon and nitrogen after clearcutting and burning of an old-growth Douglas-fir forest.

Treesearch

Joseph A. Antos; Charles B. Halpern; Richard E. Miller; Kermit Cromack; Melora G. Halaj

2003-01-01

We used 135 permanent plots (4 m2) nested within 15 blocks (121 m2) to quantify changes in concentration and spatial variation of carbon (C) and nitrogen (N) in the mineral soil (0- to 10-cm depth) after logging and broadcast burning of an old-growth, Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco)...

Long-term lesser prairie-chicken nest ecology in response to grassland management

USGS Publications Warehouse

Fritts, Sarah R.; Grisham, Blake A.; Haukos, David A.; Boal, Clint W.; Patten, Michael; Wolfe, Don H.; Dixon, Charles; Cox, Robert D.; Heck, Willard R.

2016-01-01

Long-term population and range declines from habitat loss and fragmentation caused the lesser prairie-chicken (Tympanuchus pallidicinctus) to be a species of concern throughout its range. Current lesser prairie-chicken range in New Mexico and Texas is partially restricted to sand shinnery oak (Quercus havardii; hereafter shinnery oak) prairies, on which cattle grazing is the main socioeconomic driver for private landowners. Cattle producers within shinnery oak prairies often focus land management on shrub eradication using the herbicide tebuthiuron to promote grass production for forage; however, herbicide application alone, and in combination with grazing, may affect nest site selection and nest survival of lesser prairie-chickens through the reduction of shinnery oak and native grasses. We used a controlled, paired, completely randomized design study to assess the influence of grazing and tebuthiuron application and their combined use on nest site selection and nest survival from 2001 to 2010 in Roosevelt County, New Mexico, USA at 2 spatial scales (i.e., treatment and microhabitat) in 4 treatments: tebuthiuron with grazing, tebuthiuron without grazing, no tebuthiuron with grazing, and a control of no tebuthiuron and no grazing. Grazing treatment was a short-duration system in which plots were grazed once during the dormant season and once during the growing season. Stocking rate was calculated each season based on measured forage production and applied to remove ≤25% of available herbaceous material per season. At the treatment scale, we compared nest site selection among treatments using 1-way χ2 tests and nest survival among treatments using a priori candidate nest survival models in Program MARK. At the microhabitat scale, we identified important habitat predictors of nest site selection and nest survival using logistic regression and a priori candidate nest survival models in Program MARK, respectively. Females typically used treatments as expected and we did not detect trends in selection. Nest survival did not differ among treatments. At the microhabitat scale, nest sites had less bare ground (P = 0.001) and greater angles of obstruction (P ≤ 0.001) compared to random sites. There was a high degree of model selection uncertainty among our candidate models at the microhabitat scale and survival estimates were similar among habitat covariates. Results suggest a tebuthiuron application rate of 0.60 kg/ha, short-duration grazing, and a combination of these management techniques were not detrimental to lesser prairie-chicken nest site selection or nest survival. However, intensified management that increases bare ground or reduces overhead cover may negatively affect lesser prairie-chicken nesting habitat and nest survival.

Spatial scaling of core and dominant forest cover in the Upper Mississippi and Illinois River floodplains, USA

USGS Publications Warehouse

De Jager, Nathan R.; Rohweder, Jason J.

2011-01-01

Different organisms respond to spatial structure in different terms and across different spatial scales. As a consequence, efforts to reverse habitat loss and fragmentation through strategic habitat restoration ought to account for the different habitat density and scale requirements of various taxonomic groups. Here, we estimated the local density of floodplain forest surrounding each of ~20 million 10-m forested pixels of the Upper Mississippi and Illinois River floodplains by using moving windows of multiple sizes (1–100 ha). We further identified forest pixels that met two local density thresholds: 'core' forest pixels were nested in a 100% (unfragmented) forested window and 'dominant' forest pixels were those nested in a >60% forested window. Finally, we fit two scaling functions to declines in the proportion of forest cover meeting these criteria with increasing window length for 107 management-relevant focal areas: a power function (i.e. self-similar, fractal-like scaling) and an exponential decay function (fractal dimension depends on scale). The exponential decay function consistently explained more variation in changes to the proportion of forest meeting both the 'core' and 'dominant' criteria with increasing window length than did the power function, suggesting that elevation, soil type, hydrology, and human land use constrain these forest types to a limited range of scales. To examine these scales, we transformed the decay constants to measures of the distance at which the probability of forest meeting the 'core' and 'dominant' criteria was cut in half (S 1/2, m). S 1/2 for core forest was typically between ~55 and ~95 m depending on location along the river, indicating that core forest cover is restricted to extremely fine scales. In contrast, half of all dominant forest cover was lost at scales that were typically between ~525 and 750 m, but S 1/2 was as long as 1,800 m. S 1/2 is a simple measure that (1) condenses information derived from multi-scale analyses, (2) allows for comparisons of the amount of forest habitat available to species with different habitat density and scale requirements, and (3) can be used as an index of the spatial continuity of habitat types that do not scale fractally.

Estimation of urban surface water at subpixel level from neighborhood pixels using multispectral remote sensing image (Conference Presentation)

NASA Astrophysics Data System (ADS)

Xie, Huan; Luo, Xin; Xu, Xiong; Wang, Chen; Pan, Haiyan; Tong, Xiaohua; Liu, Shijie

2016-10-01

Water body is a fundamental element in urban ecosystems and water mapping is critical for urban and landscape planning and management. As remote sensing has increasingly been used for water mapping in rural areas, this spatially explicit approach applied in urban area is also a challenging work due to the water bodies mainly distributed in a small size and the spectral confusion widely exists between water and complex features in the urban environment. Water index is the most common method for water extraction at pixel level, and spectral mixture analysis (SMA) has been widely employed in analyzing urban environment at subpixel level recently. In this paper, we introduce an automatic subpixel water mapping method in urban areas using multispectral remote sensing data. The objectives of this research consist of: (1) developing an automatic land-water mixed pixels extraction technique by water index; (2) deriving the most representative endmembers of water and land by utilizing neighboring water pixels and adaptive iterative optimal neighboring land pixel for respectively; (3) applying a linear unmixing model for subpixel water fraction estimation. Specifically, to automatically extract land-water pixels, the locally weighted scatter plot smoothing is firstly used to the original histogram curve of WI image . And then the Ostu threshold is derived as the start point to select land-water pixels based on histogram of the WI image with the land threshold and water threshold determination through the slopes of histogram curve . Based on the previous process at pixel level, the image is divided into three parts: water pixels, land pixels, and mixed land-water pixels. Then the spectral mixture analysis (SMA) is applied to land-water mixed pixels for water fraction estimation at subpixel level. With the assumption that the endmember signature of a target pixel should be more similar to adjacent pixels due to spatial dependence, the endmember of water and land are determined by neighboring pure land or pure water pixels within a distance. To obtaining the most representative endmembers in SMA, we designed an adaptive iterative endmember selection method based on the spatial similarity of adjacent pixels. According to the spectral similarity in a spatial adjacent region, the spectrum of land endmember is determined by selecting the most representative land pixel in a local window, and the spectrum of water endmember is determined by calculating an average of the water pixels in the local window. The proposed hierarchical processing method based on WI and SMA (WISMA) is applied to urban areas for reliability evaluation using the Landsat-8 Operational Land Imager (OLI) images. For comparison, four methods at pixel level and subpixel level were chosen respectively. Results indicate that the water maps generated by the proposed method correspond as closely with the truth water maps with subpixel precision. And the results showed that the WISMA achieved the best performance in water mapping with comprehensive analysis of different accuracy evaluation indexes (RMSE and SE).

Prospects for phenological monitoring in an arid southwestern U.S. rangeland using field observations with hyperspatial and moderate resolution imagery

NASA Astrophysics Data System (ADS)

Browning, D. M.; Laliberte, A. S.; Rango, A.; Herrick, J. E.

2009-12-01

Relating field observations of plant phenological events to remotely sensed depictions of land surface phenology remains a challenge to the vertical integration of data from disparate sources. This research conducted at the Jornada Basin Long-Term Ecological Research site in southern New Mexico capitalizes on legacy datasets pertaining to reproductive phenology and biomass and hyperspatial imagery. Large amounts of exposed bare soil and modest cover from shrubs and grasses in these arid and semi-arid ecosystems challenge the integration of field observations of phenology and remotely sensed data to monitor changes in land surface phenology. Drawing on established field protocols for reproductive phenology, hyperspatial imagery (4 cm), and object-based image analysis, we explore the utility of two approaches to scale detailed observations (i.e., field and 4 cm imagery) to the extent of long-term field plots (50 x 50m) and moderate resolution Landsat Thematic Mapper (TM) imagery (30 x 30m). Very high resolution color-infrared imagery was collected June 2007 across 15 LTER study sites that transect five distinct vegetation communities along a continuum of grass to shrub dominance. We examined two methods for scaling spectral vegetation indices (SVI) at 4 cm resolution: pixel averaging and object-based integration. Pixel averaging yields the mean SVI value for all pixels within the plot or TM pixel. Alternatively, the object-based method is based on a weighted average of SVI values that correspond to discrete image objects (e.g., individual shrubs or grass patches). Object-based image analysis of 4 cm imagery provides a detailed depiction of ground cover and allows us to extract species-specific contributions to upscaled SVI values. The ability to discern species- or functional-group contributions to remotely sensed signals of vegetation greenness can greatly enhance the design of field sampling protocols for phenological research. Furthermore, imagery from unmanned aerial vehicles (UAV) is a cost-effective and increasingly available resource and generation of UAV mosaics has been accomplished so that larger study areas can be addressed. This technology can provide a robust basis for scaling relationships for phenology-based research applications.

Relative equilibrium plot improves graphical analysis and allows bias correction of SUVR in quantitative [11C]PiB PET studies

PubMed Central

Zhou, Yun; Sojkova, Jitka; Resnick, Susan M.; Wong, Dean F.

2012-01-01

Both the standardized uptake value ratio (SUVR) and the Logan plot result in biased distribution volume ratios (DVR) in ligand-receptor dynamic PET studies. The objective of this study is to use a recently developed relative equilibrium-based graphical plot (RE plot) method to improve and simplify the two commonly used methods for quantification of [11C]PiB PET. Methods The overestimation of DVR in SUVR was analyzed theoretically using the Logan and the RE plots. A bias-corrected SUVR (bcSUVR) was derived from the RE plot. Seventy-eight [11C]PiB dynamic PET scans (66 from controls and 12 from mildly cognitively impaired participants (MCI) from the Baltimore Longitudinal Study of Aging (BLSA)) were acquired over 90 minutes. Regions of interest (ROIs) were defined on coregistered MRIs. Both the ROI and pixelwise time activity curves (TACs) were used to evaluate the estimates of DVR. DVRs obtained using the Logan plot applied to ROI TACs were used as a reference for comparison of DVR estimates. Results Results from the theoretical analysis were confirmed by human studies. ROI estimates from the RE plot and the bcSUVR were nearly identical to those from the Logan plot with ROI TACs. In contrast, ROI estimates from DVR images in frontal, temporal, parietal, cingulate regions, and the striatum were underestimated by the Logan plot (controls 4 – 12%; MCI 9 – 16%) and overestimated by the SUVR (controls 8 – 16%; MCI 16 – 24%). This bias was higher in the MCI group than in controls (p < 0.01) but was not present when data were analyzed using either the RE plot or the bcSUVR. Conclusion The RE plot improves pixel-wise quantification of [11C]PiB dynamic PET compared to the conventional Logan plot. The bcSUVR results in lower bias and higher consistency of DVR estimates compared to SUVR. The RE plot and the bcSUVR are practical quantitative approaches that improve the analysis of [11C]PiB studies. PMID:22414634

Analyzing Landsat time-series data across adjacent path/rows and across multiple cycles of FIA: Lessons learned in southern Missouri

Treesearch

Mark Nelson; Sean Healey; W. Keith Moser; Mark Hansen; Warren Cohen; Mark Hatfield; Nancy Thomas; Jeff Masek

2009-01-01

The North American Forest Dynamics (NAFD) Program is assessing disturbance and regrowth in the forests of the continent. These forest dynamics are interpreted from per-pixel estimates of forest biomass, which are produced for a time series of Landsat 5 Thematic Mapper (TM) and Landsat 7 Enhanced TM Plus images. Image data are combined with sample plot data from the...

Territory and nest site selection patterns by Grasshopper Sparrows in southeastern Arizona

USGS Publications Warehouse

Ruth, Janet M.; Skagen, Susan K.

2017-01-01

Grassland bird populations are showing some of the greatest rates of decline of any North American birds, prompting measures to protect and improve important habitat. We assessed how vegetation structure and composition, habitat features often targeted for management, affected territory and nest site selection by Grasshopper Sparrows (Ammodramus savannarum ammolegus) in southeastern Arizona. To identify features important to males establishing territories, we compared vegetation characteristics of known territories and random samples on 2 sites over 5 years. We examined habitat selection patterns of females by comparing characteristics of nest sites with territories over 3 years. Males selected territories in areas of sparser vegetation structure and more tall shrubs (>2 m) than random plots on the site with low shrub densities. Males did not select territories based on the proportion of exotic grasses. Females generally located nest sites in areas with lower small shrub (1–2 m tall) densities than territories overall when possible and preferentially selected native grasses for nest construction. Whether habitat selection was apparent depended upon the range of vegetation structure that was available. We identified an upper threshold above which grass structure seemed to be too high and dense for Grasshopper Sparrows. Our results suggest that some management that reduces vegetative structure may benefit this species in desert grasslands at the nest and territory scale. However, we did not assess initial male habitat selection at a broader landscape scale where their selection patterns may be different and could be influenced by vegetation density and structure outside the range of values sampled in this study.

Habitat use of nesting and brood-rearing King Rails in the Illinois and Upper Mississippi River Valleys

USGS Publications Warehouse

Darrah, A.J.; Krementz, D.G.

2011-01-01

Most studies of King Rail (Rallus elegans) have investigated habitat use during the nesting season, while few comparisons have been made between the nesting and brood-rearing seasons. King Rails were located during the nesting season in Missouri using repeated surveys with call playback, and systematic searches for broods were conducted during the brood-rearing season. King Rail adults were located at twelve points in 2006 and 14 points in 2007, and five King Rail broods were located in each year. Water depth was measured and dominant cover type determined for randomly sampled 5-m plots within used and unused habitats. Logistic regression models were fitted to the data and top models were selected from the candidate set using AICc. Nesting adults occurred more often in areas dominated by short (≤1 m) emergent vegetation ( = 0.77 ± 0.27) and deeper water ( = 0.05 ± 0.02). Broods occurred more often in areas dominated by short emergent vegetation ( = 1.19 ± 0.37) and shallow water ( = -0.17 ± 0.06), and avoided areas dominated by tall (>1 m) emergent vegetation ( =-1.15 ± 0.45). A modified catch-curve analysis was used to estimate chick daily survival rates during selected 7-day periods for each year. Daily survival rate ranged from 0.92 ± 0.008 in late June 2007 to 0.96 ± 0.005 in late July 2006. Management plans for King Rails should include the different habitat types needed during the nesting and brood-rearing stages.

Multi-Resolution Analysis of LiDAR data for Characterizing a Stabilized Aeolian Landscape in South Texas

NASA Astrophysics Data System (ADS)

Barrineau, C. P.; Dobreva, I. D.; Bishop, M. P.; Houser, C.

2014-12-01

Aeolian systems are ideal natural laboratories for examining self-organization in patterned landscapes, as certain wind regimes generate certain morphologies. Topographic information and scale dependent analysis offer the opportunity to study such systems and characterize process-form relationships. A statistically based methodology for differentiating aeolian features would enable the quantitative association of certain surface characteristics with certain morphodynamic regimes. We conducted a multi-resolution analysis of LiDAR elevation data to assess scale-dependent morphometric variations in an aeolian landscape in South Texas. For each pixel, mean elevation values are calculated along concentric circles moving outward at 100-meter intervals (i.e. 500 m, 600 m, 700 m from pixel). The calculated average elevation values plotted against distance from the pixel of interest as curves are used to differentiate multi-scalar variations in elevation across the landscape. In this case, it is hypothesized these curves may be used to quantitatively differentiate certain morphometries from others like a spectral signature may be used to classify paved surfaces from natural vegetation, for example. After generating multi-resolution curves for all the pixels in a selected area of interest (AOI), a Principal Components Analysis is used to highlight commonalities and singularities between generated curves from pixels across the AOI. Our findings suggest that the resulting components could be used for identification of discrete aeolian features like open sands, trailing ridges and active dune crests, and, in particular, zones of deflation. This new approach to landscape characterization not only works to mitigate bias introduced when researchers must select training pixels for morphometric investigations, but can also reveal patterning in aeolian landscapes that would not be as obvious without quantitative characterization.

Bridging scale gaps between regional maps of forest aboveground biomass and field sampling plots using TanDEM-X data

NASA Astrophysics Data System (ADS)

Ni, W.; Zhang, Z.; Sun, G.

2017-12-01

Several large-scale maps of forest AGB have been released [1] [2] [3]. However, these existing global or regional datasets were only approximations based on combining land cover type and representative values instead of measurements of actual forest aboveground biomass or forest heights [4]. Rodríguez-Veiga et al[5] reported obvious discrepancies of existing forest biomass stock maps with in-situ observations in Mexico. One of the biggest challenges to the credibility of these maps comes from the scale gaps between the size of field sampling plots used to develop(or validate) estimation models and the pixel size of these maps and the availability of field sampling plots with sufficient size for the verification of these products [6]. It is time-consuming and labor-intensive to collect sufficient number of field sampling data over the plot size of the same as resolutions of regional maps. The smaller field sampling plots cannot fully represent the spatial heterogeneity of forest stands as shown in Figure 1. Forest AGB is directly determined by forest heights, diameter at breast height (DBH) of each tree, forest density and tree species. What measured in the field sampling are the geometrical characteristics of forest stands including the DBH, tree heights and forest densities. The LiDAR data is considered as the best dataset for the estimation of forest AGB. The main reason is that LiDAR can directly capture geometrical features of forest stands by its range detection capabilities.The remotely sensed dataset, which is capable of direct measurements of forest spatial structures, may serve as a ladder to bridge the scale gaps between the pixel size of regional maps of forest AGB and field sampling plots. Several researches report that TanDEM-X data can be used to characterize the forest spatial structures [7, 8]. In this study, the forest AGB map of northeast China were produced using ALOS/PALSAR data taking TanDEM-X data as a bridges. The TanDEM-X InSAR data used in this study and forest AGB map was shown in Figure 2. The technique details and further analysis will be given in the final report. AcknowledgmentThis work was supported in part by the National Basic Research Program of China (Grant No. 2013CB733401, 2013CB733404), and in part by the National Natural Science Foundation of China (Grant Nos. 41471311, 41371357, 41301395).

SpcAudace: Spectroscopic processing and analysis package of Audela software

NASA Astrophysics Data System (ADS)

Mauclaire, Benjamin

2017-11-01

SpcAudace processes long slit spectra with automated pipelines and performs astrophysical analysis of the latter data. These powerful pipelines do all the required steps in one pass: standard preprocessing, masking of bad pixels, geometric corrections, registration, optimized spectrum extraction, wavelength calibration and instrumental response computation and correction. Both high and low resolution long slit spectra are managed for stellar and non-stellar targets. Many types of publication-quality figures can be easily produced: pdf and png plots or annotated time series plots. Astrophysical quantities can be derived from individual or large amount of spectra with advanced functions: from line profile characteristics to equivalent width and periodogram. More than 300 documented functions are available and can be used into TCL scripts for automation. SpcAudace is based on Audela open source software.

Retrieval of cloud cover parameters from multispectral satellite images

NASA Technical Reports Server (NTRS)

Arking, A.; Childs, J. D.

1985-01-01

A technique is described for extracting cloud cover parameters from multispectral satellite radiometric measurements. Utilizing three channels from the AVHRR (Advanced Very High Resolution Radiometer) on NOAA polar orbiting satellites, it is shown that one can retrieve four parameters for each pixel: cloud fraction within the FOV, optical thickness, cloud-top temperature and a microphysical model parameter. The last parameter is an index representing the properties of the cloud particle and is determined primarily by the radiance at 3.7 microns. The other three parameters are extracted from the visible and 11 micron infrared radiances, utilizing the information contained in the two-dimensional scatter plot of the measured radiances. The solution is essentially one in which the distributions of optical thickness and cloud-top temperature are maximally clustered for each region, with cloud fraction for each pixel adjusted to achieve maximal clustering.

Spatial variability in soil organic carbon in a tropical montane landscape: associations between soil organic carbon and land use, soil properties, vegetation, and topography vary across plot to landscape scales

NASA Astrophysics Data System (ADS)

de Blécourt, Marleen; Corre, Marife D.; Paudel, Ekananda; Harrison, Rhett D.; Brumme, Rainer; Veldkamp, Edzo

2017-08-01

Presently, the lack of data on soil organic carbon (SOC) stocks in relation to land-use types and biophysical characteristics prevents reliable estimates of ecosystem carbon stocks in montane landscapes of mainland SE Asia. Our study, conducted in a 10 000 ha landscape in Xishuangbanna, SW China, aimed at assessing the spatial variability in SOC concentrations and stocks, as well as the relationships of SOC with land-use types, soil properties, vegetation characteristics and topographical attributes at three spatial scales: (1) land-use types within a landscape (10 000 ha), (2) sampling plots (1 ha) nested within land-use types (plot distances ranging between 0.5 and 12 km), and (3) subplots (10 m radius) nested within sampling plots. We sampled 27 one-hectare plots - 10 plots in mature forests, 11 plots in regenerating or highly disturbed forests, and 6 plots in open land including tea plantations and grasslands. We used a sampling design with a hierarchical structure. The landscape was first classified according to land-use types. Within each land-use type, sampling plots were randomly selected, and within each plot we sampled within nine subplots. SOC concentrations and stocks did not differ significantly across the four land-use types. However, within the open-land category, SOC concentrations and stocks in grasslands were higher than in tea plantations (P < 0.01 for 0-0.15 m, P = 0.05 for 0.15-0.30 m, P = 0.06 for 0-0.9 m depth). The SOC stocks to a depth of 0.9 m were 177.6 ± 19.6 (SE) Mg C ha-1 in tea plantations, 199.5 ± 14.8 Mg C ha-1 in regenerating or highly disturbed forests, 228.6 ± 19.7 Mg C ha-1 in mature forests, and 236.2 ± 13.7 Mg C ha-1 in grasslands. In this montane landscape, variability within plots accounted for more than 50 % of the overall variance in SOC stocks to a depth of 0.9 m and the topsoil SOC concentrations. The relationships of SOC concentrations and stocks with land-use types, soil properties, vegetation characteristics, and topographical attributes varied across spatial scales. Variability in SOC within plots was determined by litter layer carbon stocks (P < 0.01 for 0-0.15 m and P = 0.03 for 0.15-0.30 and 0-0.9 m depth) and slope (P ≤ 0.01 for 0-0.15, 0.15-0.30, and 0-0.9 m depth) in open land, and by litter layer carbon stocks (P < 0.001 for 0-0.15, 0.15-0.30 and 0-0.9 m depth) and tree basal area (P < 0.001 for 0-0.15 m and P = 0.01 for 0-0.9 m depth) in forests. Variability in SOC among plots in open land was related to the differences in SOC concentrations and stocks between grasslands and tea plantations. In forests, the variability in SOC among plots was associated with elevation (P < 0.01 for 0-0.15 m and P = 0.09 for 0-0.9 m depth). The scale-dependent relationships between SOC and its controlling factors demonstrate that studies that aim to investigate the land-use effects on SOC need an appropriate sampling design reflecting the controlling factors of SOC so that land-use effects will not be masked by the variability between and within sampling plots.

Developing Gyrfalcon surveys and monitoring for Alaska

USGS Publications Warehouse

Fuller, Mark R.; Schempf, Philip F.; Booms, Travis L.

2011-01-01

We developed methods to monitor the status of Gyrfalcons in Alaska. Results of surveys and monitoring will be informative for resource managers and will be useful for studying potential changes in ecological communities of the high latitudes. We estimated that the probability of detecting a Gyrfalcon at an occupied nest site was between 64% and 87% depending on observer experience and aircraft type (fixed-wing or helicopter). The probability of detection is an important factor for estimating occupancy of nesting areas, and occupancy can be used as a metric for monitoring species' status. We conclude that surveys of nesting habitat to monitor occupancy during the breeding season are practical because of the high probability of seeing a Gyrfalcon from aircraft. Aerial surveys are effective for searching sample plots or index areas in the expanse of the Alaskan terrain. Furthermore, several species of cliff-nesting birds can be surveyed concurrently from aircraft. Occupancy estimation also can be applied using data from other field search methods (e.g., from boats) that have proven useful in Alaska. We believe a coordinated broad-scale, inter-agency, collaborative approach is necessary in Alaska. Monitoring can be facilitated by collating and archiving each set of results in a secure universal repository to allow for statewide meta-analysis.

Spatial grain and the causes of regional diversity gradients in ants.

PubMed

Kaspari, Michael; Yuan, May; Alonso, Leeanne

2003-03-01

Gradients of species richness (S; the number of species of a given taxon in a given area and time) are ubiquitous. A key goal in ecology is to understand whether and how the many processes that generate these gradients act at different spatial scales. Here we evaluate six hypotheses for diversity gradients with 49 New World ant communities, from tundra to rain forest. We contrast their performance at three spatial grains from S(plot), the average number of ant species nesting in a m2 plot, through Fisher's alpha, an index that treats our 30 1-m2 plots as subsamples of a locality's diversity. At the smallest grain, S(plot), was tightly correlated (r2 = 0.99) with colony abundance in a fashion indistinguishable from the packing of randomly selected individuals into a fixed space. As spatial grain increased, the coaction of two factors linked to high net rates of diversification--warm temperatures and large areas of uniform climate--accounted for 75% of the variation in Fisher's alpha. However, the mechanisms underlying these correlations (i.e., precisely how temperature and area shape the balance of speciation to extinction) remain elusive.

Distribution, nesting activities, and age-class of territorial pairs of golden eagles at the Altamont Pass Wind Resource Area, California, 2014–16

USGS Publications Warehouse

Kolar, Patrick S.; Wiens, J. David

2017-03-22

The substantial numbers of golden eagles (Aquila chrysaetos) killed by collisions with oldgeneration wind turbines each year at the Altamont Pass Wind Resource Area (APWRA) in California has been well documented from previous studies. Few eagle nests have been documented in the APWRA, however, and adults and subadults 3+ years of age killed by turbines were generally not associated with nearby territories. We searched a subset of randomly selected survey plots for territorial pairs of golden eagles and associated nesting attempts within the APWRA as part of a broader investigation of population dynamics in the surrounding northern Diablo Range. In contrast to limited historical observations from 1988 to 2013, our surveys documented up to 15 territorial pairs within 3.2 kilometers (km) of wind turbines at the APWRA annually, 9 of which were not previously documented or only observed intermittently during historical surveys. We found evidence of nesting activity by adult pairs at least once during our study at six of these territories. We also determined that 23–36 percent of territories identified within 3.2 km of the APWRA had a subadult pair member, but that no pairs with a subadult member attempted to nest. These data will be useful to developers, wildlife managers, and future raptor studies in the area to evaluate and minimize the potential effects of wind energy or other development activities on previously unknown territorial pairs in the area.

Effects of leafy spurge infestation on grassland birds

USGS Publications Warehouse

Scheiman, D.M.; Bollinger, E.K.; Johnson, D.H.

2003-01-01

Grassland bird populations are declining. Invasive plant species may be contributing to these declines by altering habitat quality. However, the effects of invasive plants on grassland birds are largely unknown. Leafy spurge (Euphorbia esula) is an exotic, invasive weed in the northern Great Plains. We examined the effects of leafy spurge infestation on densities of breeding birds, nest-site selection, and nest success in grasslands on the Sheyenne National Grassland (SNG), North Dakota, USA, 1999-2000. We categorized spurge-infested grasslands into 3 groups (low, medium, high), based on the area covered by spurge patches. We surveyed 75 100-m-radius circular points (25 in each group), and searched for nests in 6 16-ha plots (2 in each group). Grasshopper sparrow (Ammodramus savannarum) and savannah sparrow (Passerculus sandwichensis) densities were lower on high-spurge points than on low- and medium-spurge points. Bobolink (Dolichonyx oryzivorus) and western meadowlark (Sturnella neglecta) densities were not significantly different among spurge cover groups. Spurge cover did not appear to be an important factor in nest-site selection. However, western meadowlark nest success was positively associated with spurge cover. Vegetation structure is an important indicator of habitat quality and resource availability for grassland birds. Changes in vegetation structure caused by introduced plant species, such as spurge, can alter resource availability and hence affect bird community composition. Managers of spurge-infested grasslands should continue current spurge control measures to help prevent further declines in grassland habitat quality and grassland bird populations.

Efforts to eradicate yellow crazy ants on Johnston Atoll: Results from Crazy Ant Strike Team IX, December 2014-June 2015

USGS Publications Warehouse

Banko, Paul C.; Peck, Robert W.; Donmoyer, Kevin; Kropidlowski, Stephan; Pollock, Amanda

2015-01-01

The ecologically destructive yellow crazy ant (YCA; Anoplolepis gracilipes) was first detected on Johnston Atoll in January 2010. Within eight months, the U.S. Fish and Wildlife Service had mobilized its first crazy ant strike team (CAST), a group of biologists dedicated to testing and identifying insecticidal baits to be used to eradicate the ant on the atoll. During December 2014‒May 2015 CAST IX focused on testing hydrogel crystals saturated with sucrose solution (25%) carrying the insecticides thiamethoxam and dinotefuran against YCA. A series of experiments, including artificial nest box trials, and field-based palatability trials and eradication tests on small (500 m2 or 0.05 ha) and large plots (2500 m2 or 0.25 ha), were conducted to test concentrations of thiamethoxam ranging from 0.0005% to 0.01%, and dinotefuran at 0.05%. Additionally, the cat food-based matrix containing dinotefuran (0.05%), the standard bait used to suppress YCA on Johnston since 2011, and textured vegetable protein (TVP) carrying dinotefuran at 0.1% and 0.05% were included in large plot tests. Nest box trials were inconclusive due to a consistent loss of queen and worker ants in control boxes, so they were discontinued. Palatability trials suggested higher dosages of thiamethoxam (0.005 and 0.01%) were less attractive than lower dosages (0.0005 and 0.001%) and controls (sucrose only), but small and large plot experiments failed to identify a thiamethoxam concentration that was consistently effective at killing YCA. In contrast, hydrogel containing dinotefuran was consistently effective, killing >95% of YCA on small and large plots. As expected, the cat food bait effectively reduced YCA abundances, but was slightly less effective than hydrogel containing dinotefuran over time. Three successive, approximately weekly treatments of large plots with hydrogel bait, or other baits followed by hydrogel bait, suggest an increasing overall effectiveness, with no aversion of YCA to the bait. This finding is important in that it indicates that hydrogel bait can be applied at short time intervals, potentially resulting in relatively constant exposure of YCA to highly attractive, yet toxic, sucrose-based bait. TVP performed similar to hydrogel, reducing YCA abundance >92% at both concentrations tested. Finally, dosages of hydrogel containing dinotefuran at 6, 12 and 24 l/0.25 ha were all effective at reducing YCA on large plots. Overall, results from these experiments suggest that hydrogel containing dinotefuran (0.05%) is a promising tool for eradicating YCA on Johnston Atoll.

Into the Curriculum. Reading/Language Arts: Arabian Nights; Reading/Language Arts: Birds in Picture Books: Characters, Plots, and Themes; Science: Birds in Their Nests; Social Studies: Written with Quills; Social Studies: Baghdad and Iraq History.

ERIC Educational Resources Information Center

School Library Media Activities Monthly, 2003

2003-01-01

Provides five fully developed library media activities that are designed for use with specific curriculum units in reading, language arts, science, and social studies. Library media skills, curriculum objectives, grade levels, resources, instructional roles, activities and procedures, evaluation, and follow-up are described for each activity. (LRW)

Mapping species distribution of Canarian Monteverde forest by field spectroradiometry and satellite imagery

NASA Astrophysics Data System (ADS)

Martín-Luis, Antonio; Arbelo, Manuel; Hernández-Leal, Pedro; Arbelo-Bayó, Manuel

2016-10-01

Reliable and updated maps of vegetation in protected natural areas are essential for a proper management and conservation. Remote sensing is a valid tool for this purpose. In this study, a methodology based on a WorldView-2 (WV-2) satellite image and in situ spectral signatures measurements was applied to map the Canarian Monteverde ecosystem located in the north of the Tenerife Island (Canary Islands, Spain). Due to the high spectral similarity of vegetation species in the study zone, a Multiple Endmember Spectral Mixture Analysis (MESMA) was performed. MESMA determines the fractional cover of different components within one pixel and it allows for a pixel-by-pixel variation of endmembers. Two libraries of endmembers were collected for the most abundant species in the test area. The first library was collected from in situ spectral signatures measured with an ASD spectroradiometer during a field campaign in June 2015. The second library was obtained from pure pixels identified in the satellite image for the same species. The accuracy of the mapping process was assessed from a set of independent validation plots. The overall accuracy for the ASD-based method was 60.51 % compared to the 86.67 % reached for the WV-2 based mapping. The results suggest the possibility of using WV-2 images for monitoring and regularly updating the maps of the Monteverde forest on the island of Tenerife.

Sub-pixel Area Calculation Methods for Estimating Irrigated Areas.

PubMed

Thenkabailc, Prasad S; Biradar, Chandrashekar M; Noojipady, Praveen; Cai, Xueliang; Dheeravath, Venkateswarlu; Li, Yuanjie; Velpuri, Manohar; Gumma, Muralikrishna; Pandey, Suraj

2007-10-31

The goal of this paper was to develop and demonstrate practical methods forcomputing sub-pixel areas (SPAs) from coarse-resolution satellite sensor data. Themethods were tested and verified using: (a) global irrigated area map (GIAM) at 10-kmresolution based, primarily, on AVHRR data, and (b) irrigated area map for India at 500-mbased, primarily, on MODIS data. The sub-pixel irrigated areas (SPIAs) from coarse-resolution satellite sensor data were estimated by multiplying the full pixel irrigated areas(FPIAs) with irrigated area fractions (IAFs). Three methods were presented for IAFcomputation: (a) Google Earth Estimate (IAF-GEE); (b) High resolution imagery (IAF-HRI); and (c) Sub-pixel de-composition technique (IAF-SPDT). The IAF-GEE involvedthe use of "zoom-in-views" of sub-meter to 4-meter very high resolution imagery (VHRI)from Google Earth and helped determine total area available for irrigation (TAAI) or netirrigated areas that does not consider intensity or seasonality of irrigation. The IAF-HRI isa well known method that uses finer-resolution data to determine SPAs of the coarser-resolution imagery. The IAF-SPDT is a unique and innovative method wherein SPAs aredetermined based on the precise location of every pixel of a class in 2-dimensionalbrightness-greenness-wetness (BGW) feature-space plot of red band versus near-infraredband spectral reflectivity. The SPIAs computed using IAF-SPDT for the GIAM was within2 % of the SPIA computed using well known IAF-HRI. Further the fractions from the 2 methods were significantly correlated. The IAF-HRI and IAF-SPDT help to determine annualized or gross irrigated areas (AIA) that does consider intensity or seasonality (e.g., sum of areas from season 1, season 2, and continuous year-round crops). The national census based irrigated areas for the top 40 irrigated nations (which covers about 90% of global irrigation) was significantly better related (and had lesser uncertainties and errors) when compared to SPIAs than FPIAs derived using 10-km and 500-m data. The SPIAs were closer to actual areas whereas FPIAs grossly over-estimate areas. The research clearly demonstrated the value and the importance of sub-pixel areas as opposed to full pixel areas and presented 3 innovative methods for computing the same.

CCD Astrometric Measurements of WDS 00420-5547 MLO 1

NASA Astrophysics Data System (ADS)

Kith, Camerin; Wilson, Jake; Agro, Sam; Toms, Sarah; Andreski, Bella; Torrance, Emily; Tock, Kalée.

2018-01-01

The position angle and separation of WDS 00420-5547 MLO 1 has been measured and noted in 20 publications since Robert Lewis Ellery’s initial observation in 1877. This system was observed using the R-COP robotic telescope in Australia, which is part of the Skynet Robotic Telescope Network. Their small separation made it difficult to resolve the two stars, except for the lowest-exposure-time images (5 seconds and 10 seconds) using a small measuring aperture (3-4 pixel aperture radius). AstroImageJ software was used to reduce the data and contribute a new measurement: position angle 165° ± 0.63 (1± SEM) and separation ?= 6.0 arc sec ± 0.12 (1 ± SEM) on 2017.093 (Besselian date). The observation was plotted along with the past observations using the Desmos plotting tool, which allows the date to be displayed next to each position of the secondary. Despite the fact that these stars are a Common Proper Motion pair, the data and plot do not currently support classification of this system as one that is gravitationally bound.

Phenomenology of a Water Venting in Low Earth Orbit

DTIC Science & Technology

1992-01-01

of the transport of outgas , the interaction of the vehicle with the ionospheric plasma, the energy balance of cometary material, and the uses of...l 4.04 100 ZA Ic 50 o)o 200 250 300 350 400 Distance along profile (pixels) Fig. 8. (a) Equi-photocurrent plot of the water trail from the aft...distance of the onboard camera’s short ONBOARD-CANIERA IMAGES focal length lens. their corresponding mean irradiance at the focal plane is - Xs we have

United States Air Force Summer Faculty Research Program. Management Report. Volume 3

DTIC Science & Technology

1988-12-01

xyz values are basically correct, we plotted the perspective view of a target using the xyz values with MATLAB (a matrix-based mathematics softwaie...initially included all the pixels of the image in calculating votes for each accumulator. Two target types, the M-60 tank and the fuel truck, were used...J.F., Gouin, H. and Gaviglio, J., "Evolution of the Reynolds Stress Tensor in a Shock Wave-Turbulence Interaction," Indian Journal of Technology, Vol

Activity patterns and monitoring numbers of Horned Puffins and Parakeet Auklets

USGS Publications Warehouse

Hatch, Shyla A.

2002-01-01

Nearshore counts of birds on the water and time-lapse photography were used to monitor seasonal activity patterns and interannual variation in numbers of Horned Puffins (Fratercula corniculata) and Parakeet Auklets (Aethia psittacula) at the Semidi Islands, Alaska. The best period for over-water counts was mid egg-laying through hatching in auklets and late prelaying through early hatching in puffins. Daily counts (07.00 h-09.30 h) varied widely, with peak numbers and days with few or no birds present occurring throughout the census period. Variation among annual means in four years amounted to 26% and 72% of total count variation in puffins and auklets, respectively. Time-lapse photography of nesting habitat in early incubation revealed a morning (08.00 h-12.00 h) peak in the number of puffins loitering on study plots. Birds recorded in time-lapse images never comprised more than a third of the estimated breeding population on a plot. Components of variance in the time-lapse study were 29% within hours, 9% among hours (08.00 h-12.00 h), and 62% among days (8-29 June). Variability of overwater and land-based counts is reduced by standardizing the time of day when counts are made, but weather conditions had little influence on either type of count. High international variation of population indices implies low power to detect numerical trends in crevice-nesting auklets and puffins.

Experimental criteria for the determination of fractal parameters of premixed turbulent flames

NASA Astrophysics Data System (ADS)

Shepherd, I. G.; Cheng, Robert K.; Talbot, L.

1992-10-01

The influence of spatial resolution, digitization noise, the number of records used for averaging, and the method of analysis on the determination of the fractal parameters of a high Damköhler number, methane/air, premixed, turbulent stagnation-point flame are investigated in this paper. The flow exit velocity was 5 m/s and the turbulent Reynolds number was 70 based on a integral scale of 3 mm and a turbulent intensity of 7%. The light source was a copper vapor laser which delivered 20 nsecs, 5 mJ pulses at 4 kHz and the tomographic cross-sections of the flame were recorded by a high speed movie camera. The spatial resolution of the images is 155 × 121 μm/pixel with a field of view of 50 × 65 mm. The stepping caliper technique for obtaining the fractal parameters is found to give the clearest indication of the cutoffs and the effects of noise. It is necessary to ensemble average the results from more than 25 statistically independent images to reduce sufficiently the scatter in the fractal parameters. The effects of reduced spatial resolution on fractal plots are estimated by artificial degradation of the resolution of the digitized flame boundaries. The effect of pixel resolution, an apparent increase in flame length below the inner scale rolloff, appears in the fractal plots when the measurent scale is less than approximately twice the pixel resolution. Although a clearer determination of fractal parameters is obtained by local averaging of the flame boundaries which removes digitization noise, at low spatial resolution this technique can reduce the fractal dimension. The degree of fractal isotropy of the flame surface can have a significant effect on the estimation of the flame surface area and hence burning rate from two-dimensional images. To estimate this isotropy a determination of the outer cutoff is required and three-dimensional measurements are probably also necessary.

Evolution of the Olympus Mons Caldera, Mars

NASA Technical Reports Server (NTRS)

Mouginis-Mark, Peter J.; Robinson, Mark S.; Zuber, Maria T.

1990-01-01

Extensive high-resolution (15 to 20 m/pixel) coverage of Olympus Mons volcano permits the investigation of the sequence of events associated with the evolution of the nested summit caldera. The sequence of the intra-caldera events is well illustrated by image data collected on orbits 473S and 474S of Viking Orbiter 1. These data cover both the oldest and youngest portions of the caldera floor. The chronology inferred from the observations is presented which in turn can be interpreted in terms of the internal structure of the volcano (i.e., magma chamber depth and the existence of dikes).

Scaling, propagating and mapping uncertainty in spectroscopy-derived foliar traits from the leaf to the image

NASA Astrophysics Data System (ADS)

Singh, A.; Serbin, S. P.; Kingdon, C.; Townsend, P. A.

2013-12-01

A major goal of remote sensing, and imaging spectroscopy in particular, is the development of generalizable algorithms to repeatedly and accurately map ecosystem properties such as canopy chemistry across space and time. Existing methods must therefore be tested across a range of measurement approaches to identify and overcome limits to the consistent retrieval of such properties from spectroscopic imagery. Here we illustrate a general approach for the estimation of key foliar biochemical and morphological traits from spectroscopic imagery derived from the AVIRIS instrument and the propagation of errors from the leaf to the image scale using partial least squares regression (PLSR) techniques. Our method involves the integration of three types of data representing different scales of observation: At the image scale, the images were normalized for atmospheric, illumination and BRDF effects. Spectra from field plot locations were extracted from the 51AVIRIS images and were averaged when the field plot was larger than a single pixel. At the plot level, the scaling was conducted using multiple replicates (1000) derived from the leaf-level uncertainty estimates to generate plot-level estimates with their associated uncertainties. Leaf-level estimates of foliar traits (%N, %C, %Fiber, %Cellulose, %Lignin, LMA) were scaled to the canopy based on relative species composition of each plot. Image spectra were iteratively split into 50/50 randomized calibration-validation datasets and multiple (500) trait-predictive PLSR models were generated, this time sampling from within the plot-level uncertainty distribution. This allowed the propagation of uncertainty from the leaf-level dependent variables to the plot level, and finally to models built using AVIRIS image spectra. Moreover, this method allows us to generate spatially explicit maps of uncertainty in our sampled traits. Both LMA and %N PLSR models had a R2 greater than 0.8, root mean square errors (RMSEs) for both variables were less than 6% of the range of data. Fiber and lignin were predicted with R2 > 0.65 and carbon and cellulose greater than 0.5. Although R2 of these variables were lower than LMA and %N, their RMSE values were beneath 9% of the range of data. The comparatively lower R2 values for %C and cellulose in particular were related to the low amount of natural variability in these constituents. Further, coefficients from the randomized set of PLSR models were applied to imagery and aggregated to obtain pixel-wise predicted means and uncertainty estimates for each foliar trait. The resulting maps of nutritional and morphological properties together with their overall uncertainties represent a first-of-its-kind data product for examining the spatio-temporal patterns of forest functioning and nutrient cycling. These data are now being used to relate foliar traits with ecosystem processes such as streamwater nutrient export and insect herbivory. In addition, the ability to assign a retrieval uncertainty enables more efficient assimilation of these data products into ecosystem models to help constrain carbon and nutrient cycling projections.

The radio continuum-star formation rate relation in WSRT sings galaxies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heesen, Volker; Brinks, Elias; Leroy, Adam K.

2014-05-01

We present a study of the spatially resolved radio continuum-star formation rate (RC-SFR) relation using state-of-the-art star formation tracers in a sample of 17 THINGS galaxies. We use SFR surface density (Σ{sub SFR}) maps created by a linear combination of GALEX far-UV (FUV) and Spitzer 24 μm maps. We use RC maps at λλ22 and 18 cm from the WSRT SINGS survey and Hα emission maps to correct for thermal RC emission. We compare azimuthally averaged radial profiles of the RC and FUV/mid-IR (MIR) based Σ{sub SFR} maps and study pixel-by-pixel correlations at fixed linear scales of 1.2 and 0.7more » kpc. The ratio of the integrated SFRs from the RC emission to that of the FUV/MIR-based SF tracers is R{sub int}=0.78±0.38, consistent with the relation by Condon. We find a tight correlation between the radial profiles of the radio and FUV/MIR-based Σ{sub SFR} for the entire extent of the disk. The ratio R of the azimuthally averaged radio to FUV/MIR-based Σ{sub SFR} agrees with the integrated ratio and has only quasi-random fluctuations with galactocentric radius that are relatively small (25%). Pixel-by-pixel plots show a tight correlation in log-log diagrams of radio to FUV/MIR-based Σ{sub SFR}, with a typical standard deviation of a factor of two. Averaged over our sample we find (Σ{sub SFR}){sub RC}∝(Σ{sub SFR}){sub hyb}{sup 0.63±0.25}, implying that data points with high Σ{sub SFR} are relatively radio dim, whereas the reverse is true for low Σ{sub SFR}. We interpret this as a result of spectral aging of cosmic-ray electrons (CREs), which are diffusing away from the star formation sites where they are injected into the interstellar medium. This is supported by our finding that the radio spectral index is a second parameter in pixel-by-pixel plots: those data points dominated by young CREs are relatively radio dim, while those dominated by old CREs are slightly more RC bright than what would be expected from a linear extrapolation. We studied the ratio R of radio to FUV/MIR-based integrated SFR as a function of global galaxy parameters and found no clear correlation. This suggests that we can use RC emission as a universal star formation tracer for galaxies with a similar degree of accuracy as other tracers, if we restrict ourselves to global or azimuthally averaged measurements. We can reconcile our finding of an almost linear RC-SFR relation and sub-linear resolved (on 1 kpc scale) RC-Σ{sub SFR} relation by proposing a non-linear magnetic field-SFR relation, B∝SFR{sub hyb}{sup 0.30±0.02}, which holds both globally and locally.« less

SAR backscatter from coniferous forest gaps

NASA Technical Reports Server (NTRS)

Day, John L.; Davis, Frank W.

1992-01-01

A study is in progress comparing Airborne Synthetic Aperture Radar (AIRSAR) backscatter from coniferous forest plots containing gaps to backscatter from adjacent gap-free plots. Issues discussed are how do gaps in the range of 400 to 1600 sq m (approximately 4-14 pixels at intermediate incidence angles) affect forest backscatter statistics and what incidence angles, wavelengths, and polarizations are most sensitive to forest gaps. In order to visualize the slant-range imaging of forest and gaps, a simple conceptual model is used. This strictly qualitative model has led us to hypothesize that forest radar returns at short wavelengths (eg., C-band) and large incidence angles (e.g., 50 deg) should be most affected by the presence of gaps, whereas returns at long wavelengths and small angles should be least affected. Preliminary analysis of 1989 AIRSAR data from forest near Mt. Shasta supports the hypothesis. Current forest backscatter models such as MIMICS and Santa Barbara Discontinuous Canopy Backscatter Model have in several cases correctly predicted backscatter from forest stands based on inputs of measured or estimated forest parameters. These models do not, however, predict within-stand SAR scene texture, or 'intrinsic scene variability' as Ulaby et al. has referred to it. For instance, the Santa Barbara model, which may be the most spatially coupled of the existing models, is not truly spatial. Tree locations within a simulated pixel are distributed according to a Poisson process, as they are in many natural forests, but tree size is unrelated to location, which is not the case in nature. Furthermore, since pixels of a simulated stand are generated independently in the Santa Barbara model, spatial processes larger than one pixel are not modeled. Using a different approach, Oliver modeled scene texture based on an hypothetical forest geometry. His simulated scenes do not agree well with SAR data, perhaps due to the simple geometric model used. Insofar as texture is the expression of biological forest processes, such as succession and disease, and physical ones, such as fire and wind-throw, it contains useful information about the forest, and has value in image interpretation and classification. Forest gaps are undoubtedly important contributors to scene variance. By studying the localized effects of gaps on forest backscatter, guided by our qualitative model, we hope to understand more clearly the manner in which spatial heterogeneities in forests produce variations in backscatter, which collectively give rise to scene texture.

Biodiversity mapping in a tropical West African forest with airborne hyperspectral data.

PubMed

Vaglio Laurin, Gaia; Cheung-Wai Chan, Jonathan; Chen, Qi; Lindsell, Jeremy A; Coomes, David A; Guerriero, Leila; Del Frate, Fabio; Miglietta, Franco; Valentini, Riccardo

2014-01-01

Tropical forests are major repositories of biodiversity, but are fast disappearing as land is converted to agriculture. Decision-makers need to know which of the remaining forests to prioritize for conservation, but the only spatial information on forest biodiversity has, until recently, come from a sparse network of ground-based plots. Here we explore whether airborne hyperspectral imagery can be used to predict the alpha diversity of upper canopy trees in a West African forest. The abundance of tree species were collected from 64 plots (each 1250 m(2) in size) within a Sierra Leonean national park, and Shannon-Wiener biodiversity indices were calculated. An airborne spectrometer measured reflectances of 186 bands in the visible and near-infrared spectral range at 1 m(2) resolution. The standard deviations of these reflectance values and their first-order derivatives were calculated for each plot from the c. 1250 pixels of hyperspectral information within them. Shannon-Wiener indices were then predicted from these plot-based reflectance statistics using a machine-learning algorithm (Random Forest). The regression model fitted the data well (pseudo-R(2) = 84.9%), and we show that standard deviations of green-band reflectances and infra-red region derivatives had the strongest explanatory powers. Our work shows that airborne hyperspectral sensing can be very effective at mapping canopy tree diversity, because its high spatial resolution allows within-plot heterogeneity in reflectance to be characterized, making it an effective tool for monitoring forest biodiversity over large geographic scales.

Biodiversity Mapping in a Tropical West African Forest with Airborne Hyperspectral Data

PubMed Central

Vaglio Laurin, Gaia; Chan, Jonathan Cheung-Wai; Chen, Qi; Lindsell, Jeremy A.; Coomes, David A.; Guerriero, Leila; Frate, Fabio Del; Miglietta, Franco; Valentini, Riccardo

2014-01-01

Tropical forests are major repositories of biodiversity, but are fast disappearing as land is converted to agriculture. Decision-makers need to know which of the remaining forests to prioritize for conservation, but the only spatial information on forest biodiversity has, until recently, come from a sparse network of ground-based plots. Here we explore whether airborne hyperspectral imagery can be used to predict the alpha diversity of upper canopy trees in a West African forest. The abundance of tree species were collected from 64 plots (each 1250 m2 in size) within a Sierra Leonean national park, and Shannon-Wiener biodiversity indices were calculated. An airborne spectrometer measured reflectances of 186 bands in the visible and near-infrared spectral range at 1 m2 resolution. The standard deviations of these reflectance values and their first-order derivatives were calculated for each plot from the c. 1250 pixels of hyperspectral information within them. Shannon-Wiener indices were then predicted from these plot-based reflectance statistics using a machine-learning algorithm (Random Forest). The regression model fitted the data well (pseudo-R2 = 84.9%), and we show that standard deviations of green-band reflectances and infra-red region derivatives had the strongest explanatory powers. Our work shows that airborne hyperspectral sensing can be very effective at mapping canopy tree diversity, because its high spatial resolution allows within-plot heterogeneity in reflectance to be characterized, making it an effective tool for monitoring forest biodiversity over large geographic scales. PMID:24937407

An approach of surface coal fire detection from ASTER and Landsat-8 thermal data: Jharia coal field, India

NASA Astrophysics Data System (ADS)

Roy, Priyom; Guha, Arindam; Kumar, K. Vinod

2015-07-01

Radiant temperature images from thermal remote sensing sensors are used to delineate surface coal fires, by deriving a cut-off temperature to separate coal-fire from non-fire pixels. Temperature contrast of coal fire and background elements (rocks and vegetation etc.) controls this cut-off temperature. This contrast varies across the coal field, as it is influenced by variability of associated rock types, proportion of vegetation cover and intensity of coal fires etc. We have delineated coal fires from background, based on separation in data clusters in maximum v/s mean radiant temperature (13th band of ASTER and 10th band of Landsat-8) scatter-plot, derived using randomly distributed homogeneous pixel-blocks (9 × 9 pixels for ASTER and 27 × 27 pixels for Landsat-8), covering the entire coal bearing geological formation. It is seen that, for both the datasets, overall temperature variability of background and fires can be addressed using this regional cut-off. However, the summer time ASTER data could not delineate fire pixels for one specific mine (Bhulanbararee) as opposed to the winter time Landsat-8 data. The contrast of radiant temperature of fire and background terrain elements, specific to this mine, is different from the regional contrast of fire and background, during summer. This is due to the higher solar heating of background rocky outcrops, thus, reducing their temperature contrast with fire. The specific cut-off temperature determined for this mine, to extract this fire, differs from the regional cut-off. This is derived by reducing the pixel-block size of the temperature data. It is seen that, summer-time ASTER image is useful for fire detection but required additional processing to determine a local threshold, along with the regional threshold to capture all the fires. However, the winter Landsat-8 data was better for fire detection with a regional threshold.

Quantifying post-fire fallen trees using multi-temporal lidar

NASA Astrophysics Data System (ADS)

Bohlin, Inka; Olsson, Håkan; Bohlin, Jonas; Granström, Anders

2017-12-01

Massive tree-felling due to root damage is a common fire effect on burnt areas in Scandinavia, but has so far not been analyzed in detail. Here we explore if pre- and post-fire lidar data can be used to estimate the proportion of fallen trees. The study was carried out within a large (14,000 ha) area in central Sweden burnt in August 2014, where we had access to airborne lidar data from both 2011 and 2015. Three data-sets of predictor variables were tested: POST (post-fire lidar metrics), DIF (difference between post- and pre-fire lidar metrics) and combination of those two (POST_DIF). Fractional logistic regression was used to predict the proportion of fallen trees. Training data consisted of 61 plots, where the number of fallen and standing trees was calculated both in the field and with interpretation of drone images. The accuracy of the best model was tested based on 100 randomly selected validation plots with a size of 25 × 25 m. Our results showed that multi-temporal lidar together with field-collected training data can be used for quantifying post-fire tree felling over large areas. Several height-, density- and intensity metrics correlated with the proportion of fallen trees. The best model combined metrics from both datasets (POST_DIF), resulting in a RMSE of 0.11. Results were slightly poorer in the validation plots with RMSE of 0.18 using pixel size of 12.5 m and RMSE of 0.15 using pixel size of 6.25 m. Our model performed least well for stands that had been exposed to high-intensity crown fire. This was likely due to the low amount of echoes from the standing black tree skeletons. Wall-to-wall maps produced with this model can be used for landscape level analysis of fire effects and to explore the relationship between fallen trees and forest structure, soil type, fire intensity or topography.

Mapping Irrigated Areas in the Tunisian Semi-Arid Context with Landsat Thermal and VNIR Data Imagery

NASA Astrophysics Data System (ADS)

Rivalland, Vincent; Drissi, Hsan; Simonneaux, Vincent; Tardy, Benjamin; Boulet, Gilles

2016-04-01

Our study area is the Merguellil semi-arid irrigated plain in Tunisia, where the water resource management is an important stake for governmental institutions, farmer communities and more generally for the environment. Indeed, groundwater abstraction for irrigation is the primary cause of aquifer depletion. Moreover, unregistered pumping practices are widespread and very difficult to survey by authorities. Thus, the identification of areas actually irrigated in the whole plain is of major interest. In order to map the irrigated areas, we tried out a methodology based on the use of Landsat 7 and 8 Land Surface Temperature (LST) data issued from atmospherically corrected thermal band using the LANDARTs Tool jointly with the NDVI vegetation indices obtained from visible ane near infrared (VNIR) bands. For each Landsat acquisition during the years 2012 to 2014, we computed a probability of irrigation based on the location of the pixel in the NDVI - LST space. Basically for a given NDVI value, the cooler the pixel the higher its probability to be irrigated is. For each date, pixels were classified in seven bins of irrigation probability ranges. Pixel probabilities for each date were then summed over the study period resulting in a probability map of irrigation. Comparison with ground data shows a consistent identification of irrigated plots and supports the potential operational interest of the method. However, results were hampered by the low Landsat LST data availability due to clouds and the inadequate revisit frequency of the sensor.

Impaired Intracellular Ca2+ Dynamics in Live Cardiomyocytes Revealed by Rapid Line Scan Confocal Microscopy

NASA Astrophysics Data System (ADS)

Plank, David M.; Sussman, Mark A.

2005-06-01

Altered intracellular Ca2+ dynamics are characteristically observed in cardiomyocytes from failing hearts. Studies of Ca2+ handling in myocytes predominantly use Fluo-3 AM, a visible light excitable Ca2+ chelating fluorescent dye in conjunction with rapid line-scanning confocal microscopy. However, Fluo-3 AM does not allow for traditional ratiometric determination of intracellular Ca2+ concentration and has required the use of mathematic correction factors with values obtained from separate procedures to convert Fluo-3 AM fluorescence to appropriate Ca2+ concentrations. This study describes methodology to directly measure intracellular Ca2+ levels using inactivated, Fluo-3-AM-loaded cardiomyocytes equilibrated with Ca2+ concentration standards. Titration of Ca2+ concentration exhibits a linear relationship to increasing Fluo-3 AM fluorescence intensity. Images obtained from individual myocyte confocal scans were recorded, average pixel intensity values were calculated, and a plot is generated relating the average pixel intensity to known Ca2+ concentrations. These standard plots can be used to convert transient Ca2+ fluorescence obtained with experimental cells to Ca2+ concentrations by linear regression analysis. Standards are determined on the same microscope used for acquisition of unknown Ca2+ concentrations, simplifying data interpretation and assuring accuracy of conversion values. This procedure eliminates additional equipment, ratiometric imaging, and mathematic correction factors and should be useful to investigators requiring a straightforward method for measuring Ca2+ concentrations in live cells using Ca2+-chelating dyes exhibiting variable fluorescence intensity.

MontePython 3: Parameter inference code for cosmology

NASA Astrophysics Data System (ADS)

Brinckmann, Thejs; Lesgourgues, Julien; Audren, Benjamin; Benabed, Karim; Prunet, Simon

2018-05-01

MontePython 3 provides numerous ways to explore parameter space using Monte Carlo Markov Chain (MCMC) sampling, including Metropolis-Hastings, Nested Sampling, Cosmo Hammer, and a Fisher sampling method. This improved version of the Monte Python (ascl:1307.002) parameter inference code for cosmology offers new ingredients that improve the performance of Metropolis-Hastings sampling, speeding up convergence and offering significant time improvement in difficult runs. Additional likelihoods and plotting options are available, as are post-processing algorithms such as Importance Sampling and Adding Derived Parameter.

Demography of a breeding population of whimbrel (Numenius phaeopus) near Churchill, Manitoba, Canada

NASA Astrophysics Data System (ADS)

Perz, Johanna

I used a GIS raster layer of an area in the Churchill, Manitoba region to investigate the effect of breeding habitat on demography and density of Whimbrel from 2010 through 2013. Program MARK was used to quantify adult and daily nest survival. Apparent annual survival of 0.73 +/- 0.06 SE (95% CI = 0.60-0.83) did not significantly differ between sexes or habitats and was lower than expected based on longevity records and estimates for other large-bodied shorebirds. Nest success, corrected for exposure days, was highly variable, ranging from a low of 3% (95% CI = 0-12%) in 2011 to a high of 71% (95% CI = 54-83%) in 2013. The highest rate of nest survival occurred in the spring with the warmest mean temperature. I developed a generalized linear model (GLM) with a negative-binomial distribution from random plots that were surveyed for abundance to extrapolate a local breeding population size of 410 +/- 230 SE and density of 3.2 birds per square km +/- 1.8 SE. The result of my study suggests that other aspects of habitat not captured by the land cover categories may be more important to population dynamics.

Mars Descent Imager (MARDI) on the Mars Polar Lander

USGS Publications Warehouse

Malin, M.C.; Caplinger, M.A.; Carr, M.H.; Squyres, S.; Thomas, P.; Veverka, J.

2001-01-01

The Mars Descent Imager, or MARDI, experiment on the Mars Polar Lander (MPL) consists of a camera characterized by small physical size and mass (???6 ?? 6 ?? 12 cm, including baffle; <500 gm), low power requirements (<2.5 W, including power supply losses), and high science performance (1000 x 1000 pixel, low noise). The intent of the investigation is to acquire nested images over a range of resolutions, from 8 m/pixel to better than 1 cm/pixel, during the roughly 2 min it takes the MPL to descend from 8 km to the surface under parachute and rocket-powered deceleration. Observational goals will include studies of (1) surface morphology (e.g., nature and distribution of landforms indicating past and present environmental processes); (2) local and regional geography (e.g., context for other lander instruments: precise location, detailed local relief); and (3) relationships to features seen in orbiter data. To accomplish these goals, MARDI will collect three types of images. Four small images (256 x 256 pixels) will be acquired on 0.5 s centers beginning 0.3 s before MPL's heatshield is jettisoned. Sixteen full-frame images (1024 X 1024, circularly edited) will be acquired on 5.3 s centers thereafter. Just after backshell jettison but prior to the start of powered descent, a "best final nonpowered descent image" will be acquired. Five seconds after the start of powered descent, the camera will begin acquiring images on 4 s centers. Storage for as many as ten 800 x 800 pixel images is available during terminal descent. A number of spacecraft factors are likely to impact the quality of MARDI images, including substantial motion blur resulting from large rates of attitude variation during parachute descent and substantial rocket-engine-induced vibration during powered descent. In addition, the mounting location of the camera places the exhaust plume of the hydrazine engines prominently in the field of view. Copyright 2001 by the American Geophysical Union.

The low energy detector of Simbol-X

NASA Astrophysics Data System (ADS)

Lechner, P.; Andricek, L.; Briel, U.; Hasinger, G.; Heinzinger, K.; Herrmann, S.; Huber, H.; Kendziorra, E.; Lauf, T.; Lutz, G.; Richter, R.; Santangelo, A.; Schaller, G.; Schnecke, M.; Schopper, F.; Segneri, G.; Strüder, L.; Treis, J.

2008-07-01

Simbol-X is a French-Italian-German hard energy X-ray mission with a projected launch in 2014. Being sensitive in the energy range from 500 eV to 80 keV it will cover the sensitivity gap beyond the energy interval of today's telescopes XMM-Newton and Chandra. Simbol-X will use an imaging telescope of nested Wolter-I mirrors. To provide a focal length of 20 m it will be the first mission of two independent mirror and detector spacecrafts in autonomous formation flight. The detector spacecraft's payload is composed of an imaging silicon low energy detector in front of a pixelated cadmium-telluride hard energy detector. Both have a sensitive area of 8 × 8 cm2 to cover a 12 arcmin field of view and a pixel size of 625 × 625 μm2 adapted to the telescope's resolution of 20 arcsec. The additional LED specifications are: high energy resolution, high quantum efficiency, fast readout and optional window mode, monolithic device with 100 % fill factor and suspension mounting, and operation at warm temperature. To match these requirements the low energy detector is composed of 'active macro pixels', combining the large, scalable area of a Silicon Drift Detector and the low-noise, on-demand readout of an integrated DEPFET amplifier. Flight representative prototypes have been processed at the MPI semiconductor laboratory, and the prototype's measured performance demonstrates the technology readiness.

Mesoherbivores affect grasshopper communities in a megaherbivore-dominated South African savannah.

PubMed

van der Plas, Fons; Olff, Han

2014-06-01

African savannahs are among the few places on earth where diverse communities of mega- and meso-sized ungulate grazers dominate ecosystem functioning. Less conspicuous, but even more diverse, are the communities of herbivorous insects such as grasshoppers, which share the same food. Various studies investigated the community assembly of these groups separately, but it is poorly known how ungulate communities shape grasshopper communities. Here, we investigated how ungulate species of different body size alter grasshopper communities in a South African savannah. White rhino is the most abundant vertebrate herbivore in our study site. Other common mesoherbivores include buffalo, zebra and impala. We hypothesized that white rhinos would have greater impact than mesoherbivores on grasshopper communities. Using 10-year-old exclosures, at eight sites we compared the effects of ungulates on grasshopper communities in three nested treatments: (i) unfenced plots ('control plots') with all vertebrate herbivores present, (ii) plots with a low cable fence, excluding white rhino ('megaherbivore exclosures'), and (iii) plots with tall fences, excluding all herbivores larger than rodents ('complete ungulate exclosures'). In each plot, we collected data of vegetation structure, grass and grasshopper community composition. Complete ungulate exclosures contained 30% taller vegetation than megaherbivore exclosures and they were dominated by different grass and grasshopper species. Grasshoppers in complete ungulate exclosures were on average 3.5 mm longer than grasshoppers in megaherbivore exclosures, possibly due to changes in plant communities or vegetation structure. We conclude that surprisingly, in this megaherbivore hotspot, mesoherbivores, instead of megaherbivores, most strongly affect grasshopper communities.

Feedback dynamics of grazing lawns: Coupling vegetation change with animal growth

USGS Publications Warehouse

Person, Brian T.; Herzog, M.P.; Ruess, Roger W.; Sedinger, J.S.; Anthony, R. Michael; Babcock, C.A.

2003-01-01

We studied the effects of grazing by Black Brant (Branta bernicla nigricans) geese (hereafter Brant) on plant community zonation and gosling growth between 1987 and 2000 at a nesting colony in southwestern Alaska. The preferred forage of Brant, Carex subspathacea, is only found as a grazing lawn. An alternate forage species, C. ramenskii, exists primarily as meadow but also forms grazing lawns when heavily grazed. We mowed plots of ungrazed C. ramenskii meadows to create swards that Brant could select and maintain as grazing lawns. Fecal counts were higher on mowed plots than on control plots in the year after plots were mowed. Both nutritional quality and aboveground biomass of C. ramenskii in mowed plots were similar to that of C. subspathacea grazing lawns. The areal extent of grazing lawns depends in part on the population size of Brant. High Brant populations can increase the areal extent of grazing lawns, which favors the growth of goslings. Grazing lawns increased from 3% to 8% of surface area as the areal extent of C. ramenskii meadows declined between 1991 and 1999. Gosling mass was lower early in this time period due to density dependent effects. As the goose population stabilized, and area of grazing lawns increased, gosling mass increased between 1993 and 1999. Because larger goslings have increased survival, higher probability of breeding, and higher fecundity, herbivore-mediated changes in the distribution grazing lawn extent may result in a numerical increase of the population within the next two decades.

Vocalization behavior and response of black rails

USGS Publications Warehouse

Legare, M.L.; Eddleman, W.R.; Buckley, P.A.; Kelly, C.

1999-01-01

We measured the vocal responses and movements of radio-tagged black rails (Laterallus jamaicensis) (n = 43, 26 males, 17 females) to playback of vocalizations at 2 sites in Florida during the breeding seasons of 1992-95. We used regression coefficients from logistic regression equations to model the probability of a response conditional to the birds' sex, nesting status, distance to playback source, and the time of survey. With a probability of 0.811, non-nesting male black rails were most likely to respond to playback, while nesting females were the least likely to respond (probability = 0.189). Linear regression was used to determine daily, monthly, and annual variation in response from weekly playback surveys along a fixed route during the breeding seasons of 1993-95. Significant sources of variation in the linear regression model were month (F = 3.89, df = 3, p = 0.0140), year (F = 9.37, df = 2, p = 0.0003), temperature (F = 5.44, df=1, p = 0.0236), and month*year (F = 2.69, df = 5, p = 0.0311). The model was highly significant (p < 0.0001) and explained 53% of the variation of mean response per survey period (R2 = 0.5353). Response probability data obtained from the radio-tagged black rails and data from the weekly playback survey route were combined to provide a density estimate of 0.25 birds/ha for the St. Johns National Wildlife Refuge. Density estimates for black rails may be obtained from playback surveys, and fixed radius circular plots. Circular plots should be considered as having a radius of 80 m and be located so the plot centers are 150 m apart. Playback tapes should contain one series of Kic-kic-kerr and Growl vocalizations recorded within the same geographic region as the study area. Surveys should be conducted from 0-2 hours after sunrise or 0-2 hours before sunset, during the pre-nesting season, and when wind velocity is < 20 kph. Observers should listen for 3-4 minutes after playing the survey tape and record responses heard during that time. Observers should be trained to identify black rail vocalizations and should have acceptable hearing ability. Given the number of variables that may have large effects on the response behavior of black rails to tape playback, we recommend that future studies using playback surveys should be cautious when presenting estimates of 'absolute' density. Though results did account for variation in response behavior, we believe that additional variation in vocal response between sites, with breeding status, and bird density remains in question. Playback surveys along fixed routes providing a simple index of abundance would be useful to monitor populations over large geographic areas, and over time. Considering the limitations of most agency resources for webless waterbirds, index surveys may be more appropriate. Future telemetry studies of this type on other species and at other sites would be useful to calibrate information obtained from playback surveys whether reporting an index of abundance or density estimate.

Wildlife and habitat damage assessment from Hurricane Charley: recommendations for recovery of the J. N. "Ding" Darling National Wildlife Refuge Complex. [Final report to U.S. Fish and Wildlife Service

USGS Publications Warehouse

Meyers, J.M.; Langtimm, C.A.; Smith, T. J.; Pednault-Willett, K.

2005-01-01

On 13 August 2004, the first of four hurricanes to strike Florida in 50% and sometimes 90% of their vegetation severely damaged (dead, broken tree stems, and tipped trees). Shell Mound Trail of JNDDNWR sustained catastrophic damage to its old growth mangrove forests. Direct storm mortality and injury to manatees in the area was probably slight. Because seagrass beads and manatee habitat extend beyond refuge boundaries, we recommended a regional approach with partner agencies to more thoroughly assess storm impacts and monitor recovery of seagrass and manatees. Besides intensive monitoring of waterbirds and their nesting habitat (pre- and post-storm), we recommend that the Mangrove Cuckoo be used as an indicator species for recovery of mangrove forests and also for monitoring songbirds at risk. Black-whiskered Vireo may be another potential indicator species to monitor in mangrove forests. Damaged vegetation should be monitored for recovery (permanent or long-term plots), especially where previous study plots have been established and with additional plots in mangrove forests of waterbird nesting islands and freshwater wetlands. Potential loss of wetlands may be prevented by water level monitoring, locating the positions (GPS-GIS) and maintaining existing water control structures, creating a GIS map of refuge with accurate vertical data, and monitoring and eradicating invasive plants. Invasive species, including Brazilian pepper (Schinus terebinthifolius) and air potato (Dioscorea bulbifora), were common in a very limited survey. As an important monitoring goal, we recommend that species presence-absence data analysis (with probability of detection) be used to determine changes in animal communities. This could be accomplished possibly with comparison to other storm-damaged and undamaged refuges in the Region. This information may be helpful to refuge managers when storms return in the future.

A multiview boosting approach to tissue segmentation

NASA Astrophysics Data System (ADS)

Kwak, Jin Tae; Xu, Sheng; Pinto, Peter A.; Turkbey, Baris; Bernardo, Marcelino; Choyke, Peter L.; Wood, Bradford J.

2014-04-01

Digitized histopathology images have a great potential for improving or facilitating current assessment tools in cancer pathology. In order to develop accurate and robust automated methods, the precise segmentation of histologic objects such epithelium, stroma, and nucleus is necessary, in the hopes of information extraction not otherwise obvious to the subjective eye. Here, we propose a multivew boosting approach to segment histology objects of prostate tissue. Tissue specimen images are first represented at different scales using a Gaussian kernel and converted into several forms such HSV and La*b*. Intensity- and texture-based features are extracted from the converted images. Adopting multiview boosting approach, we effectively learn a classifier to predict the histologic class of a pixel in a prostate tissue specimen. The method attempts to integrate the information from multiple scales (or views). 18 prostate tissue specimens from 4 patients were employed to evaluate the new method. The method was trained on 11 tissue specimens including 75,832 epithelial and 103,453 stroma pixels and tested on 55,319 epithelial and 74,945 stroma pixels from 7 tissue specimens. The technique showed 96.7% accuracy, and as summarized into a receiver operating characteristic (ROC) plot, the area under the ROC curve (AUC) of 0.983 (95% CI: 0.983-0.984) was achieved.

The effect of vegetation type, microrelief, and incidence angle on radar backscatter

NASA Technical Reports Server (NTRS)

Owe, M.; Oneill, P. E.; Jackson, T. J.; Schmugge, T. J.

1985-01-01

The NASA/JPL Synthetic Aperture Radar (SAR) was flown over a 20 x 110 km test site in the Texas High Plains regions north of Lubbock during February/March 1984. The effect of incidence angle was investigated by comparing the pixel values of the calibrated and uncalibrated images. Ten-pixel-wide transects along the entire azimuth were averaged in each of the two scenes, and plotted against the calculated incidence angle of the center of each range increment. It is evident from the graphs that both the magnitudes and patterns exhibited by the corresponding transect means of the two images are highly dissimilar. For each of the cross-poles, the uncalibrated image displayed very distinct and systematic positive trends through the entire range of incidence angles. The two like-poles, however, exhibited relatively constant returns. In the calibrated image, the cross-poles exhibited a constant return, while the like-poles demonstrated a strong negative trend across the range of look-angles, as might be expected.

Assessing Temporal Stability for Coarse Scale Satellite Moisture Validation in the Maqu Area, Tibet

PubMed Central

Bhatti, Haris Akram; Rientjes, Tom; Verhoef, Wouter; Yaseen, Muhammad

2013-01-01

This study evaluates if the temporal stability concept is applicable to a time series of satellite soil moisture images so to extend the common procedure of satellite image validation. The area of study is the Maqu area, which is located in the northeastern part of the Tibetan plateau. The network serves validation purposes of coarse scale (25–50 km) satellite soil moisture products and comprises 20 stations with probes installed at depths of 5, 10, 20, 40, 80 cm. The study period is 2009. The temporal stability concept is applied to all five depths of the soil moisture measuring network and to a time series of satellite-based moisture products from the Advance Microwave Scanning Radiometer (AMSR-E). The in-situ network is also assessed by Pearsons's correlation analysis. Assessments by the temporal stability concept proved to be useful and results suggest that probe measurements at 10 cm depth best match to the satellite observations. The Mean Relative Difference plot for satellite pixels shows that a RMSM pixel can be identified but in our case this pixel does not overlay any in-situ station. Also, the RMSM pixel does not overlay any of the Representative Mean Soil Moisture (RMSM) stations of the five probe depths. Pearson's correlation analysis on in-situ measurements suggests that moisture patterns over time are more persistent than over space. Since this study presents first results on the application of the temporal stability concept to a series of satellite images, we recommend further tests to become more conclusive on effectiveness to broaden the procedure of satellite validation. PMID:23959237

PET Pharmacokinetic Modelling

NASA Astrophysics Data System (ADS)

Müller-Schauenburg, Wolfgang; Reimold, Matthias

Positron Emission Tomography is a well-established technique that allows imaging and quantification of tissue properties in-vivo. The goal of pharmacokinetic modelling is to estimate physiological parameters, e.g. perfusion or receptor density from the measured time course of a radiotracer. After a brief overview of clinical application of PET, we summarize the fundamentals of modelling: distribution volume, Fick's principle of local balancing, extraction and perfusion, and how to calculate equilibrium data from measurements after bolus injection. Three fundamental models are considered: (i) the 1-tissue compartment model, e.g. for regional cerebral blood flow (rCBF) with the short-lived tracer [15O]water, (ii) the 2-tissue compartment model accounting for trapping (one exponential + constant), e.g. for glucose metabolism with [18F]FDG, (iii) the reversible 2-tissue compartment model (two exponentials), e.g. for receptor binding. Arterial blood sampling is required for classical PET modelling, but can often be avoided by comparing regions with specific binding with so called reference regions with negligible specific uptake, e.g. in receptor imaging. To estimate the model parameters, non-linear least square fits are the standard. Various linearizations have been proposed for rapid parameter estimation, e.g. on a pixel-by-pixel basis, for the prize of a bias. Such linear approaches exist for all three models; e.g. the PATLAK-plot for trapping substances like FDG, and the LOGAN-plot to obtain distribution volumes for reversibly binding tracers. The description of receptor modelling is dedicated to the approaches of the subsequent lecture (chapter) of Millet, who works in the tradition of Delforge with multiple-injection investigations.

Evaluation of Military Range Berm Effectiveness in Protecting Red-cockaded Woodpecker Foraging and Nesting Habitat

DTIC Science & Technology

2011-04-01

Benning – Malone 5 Malone 5 is an unbermed SA machine gun (firing 7.62 mm or smaller caliber rounds) range with elevated firing and target boxes (~1...plots, not originally allocated. Fort Stewart – Kilo The Kilo range on Fort Stewart is an unbermed SA machine gun (firing 7.62 mm or smaller...is a bermed SA machine gun (firing 7.62 mm or smaller caliber rounds) range with elevated firing boxes and targets (~1-m high; Figures 6 and 7). The

Phase transition of Boolean networks with partially nested canalizing functions

NASA Astrophysics Data System (ADS)

Jansen, Kayse; Matache, Mihaela Teodora

2013-07-01

We generate the critical condition for the phase transition of a Boolean network governed by partially nested canalizing functions for which a fraction of the inputs are canalizing, while the remaining non-canalizing inputs obey a complementary threshold Boolean function. Past studies have considered the stability of fully or partially nested canalizing functions paired with random choices of the complementary function. In some of those studies conflicting results were found with regard to the presence of chaotic behavior. Moreover, those studies focus mostly on ergodic networks in which initial states are assumed equally likely. We relax that assumption and find the critical condition for the sensitivity of the network under a non-ergodic scenario. We use the proposed mathematical model to determine parameter values for which phase transitions from order to chaos occur. We generate Derrida plots to show that the mathematical model matches the actual network dynamics. The phase transition diagrams indicate that both order and chaos can occur, and that certain parameters induce a larger range of values leading to order versus chaos. The edge-of-chaos curves are identified analytically and numerically. It is shown that the depth of canalization does not cause major dynamical changes once certain thresholds are reached; these thresholds are fairly small in comparison to the connectivity of the nodes.

Riparian zones as havens for exotic plant species in the central grasslands

USGS Publications Warehouse

Stohlgren, T.J.; Bull, K.A.; Otsuki, Yuka; Villa, C.A.; Lee, M.

1998-01-01

In the Central Grasslands of the United States, we hypothesized that riparian zones high in soil fertility would contain more exotic plant species than upland areas of low soil fertility. Our alternate hypothesis was that riparian zones high in native plant species richness and cover would monopolize available resources and resist invasion by exotic species. We gathered nested-scale vegetation data from 40 1 m2subplots (nested in four 1000 m2 plots) in both riparian and upland sites at four study areas in Colorado, Wyoming, and South Dakota (a total of 320 1 m2subplots and 32 1000 m2 plots). At the 1 m2 scale, mean foliar cover of native species was significantly greater (P < 0.001) in riparian zones (36.6% ?? 1.7%) compared to upland sites (28.7% ?? 1.5%), but at this small scale there were no consistent patterns of native and exotic species richness among the four management areas. Mean exotic species cover was slightly higher in upland sites compared to riparian sites (9.0% ?? 3.8% versus 8.2% ?? 3.0% cover). However, mean exotic species richness and cover were greater in the riparian zones than upland sites in three of four management areas. At the 1000 m2 scale, mean exotic species richness was also significantly greater (P < 0.05) in riparian zones (7.8 ?? 1.0 species) compared to upland sites (4.8 ?? 1.0 species) despite the heavy invasion of one upland site. For all 32 plots combined, 21% of the variance in exotic species richness was explained by positive relationships with soil % silt (t = 1.7, P = 0.09) and total foliar cover (t = 2.4, P = 0.02). Likewise, 26% of the variance in exotic species cover (log10 cover) was explained by positive relationships with soil % silt (t = 2.3, P = 0.03) and total plant species richness (t = 2.4, P = 0.02). At landscape scales (four 1000 m2 plots per type combined), total foliar cover was significantly and positively correlated with exotic species richness (r = 0.73, P < 0.05) and cover (r = 0.74, P < 0.05). Exotic species cover (log10 cover) was positively correlated with log10% N in the soil (r = 0.61, P = 0.11) at landscape scales. On average, we found that 85% (??5%) of the total number of exotic species in the sampling plots of a given management area could be found in riparian zones, while only 50% (??8%) were found in upland plots. We conclude that: (1 species-rich and productive riparian zones are particularly invasible in grassland ecosystems; and (2) riparian zones may act as havens, corridors, and sources of exotic plant invasions for upland sites and pose a significant challenge to land managers and conservation biologists.

Mapping lichen color-groups in western Arctic Alaska using seasonal Landsat composites

NASA Astrophysics Data System (ADS)

Nelson, P.; Macander, M. J.; Swingley, C. S.

2016-12-01

Mapping lichens at a landscape scale has received increased recent interest due to fears that terricolous lichen mats, primary winter caribou forage, may be decreasing across the arctic and boreal zones. However, previous efforts have produced taxonomically coarse, total lichen cover maps or have covered relatively small spatial extents. Here we attempt to map lichens of differing colors as species proxies across northwestern Alaska to produce the finest taxonomic and spatial- grained lichen maps covering the largest spatial extent to date. Lichen community sampling in five western Alaskan National Parks and Preserves from 2007-2012 generated 328 FIA-style 34.7 m radius plots on which species-level macrolichen community structure and abundance was estimated. Species were coded by color and plot lichen cover was aggregated by plot as the sum of the cover of each species in a color group. Ten different lichen color groupings were used for modeling to deduce which colors were most detectable. Reflectance signatures of each plot were extracted from a series of Landsat composites (circa 2000-2010) partitioned into two-week intervals from June 1 to Sept. 15. Median reflectance values for each band in each pixel were selected based on filtering criteria to reduce likelihood of snow cover. Lichen color group cover was regressed against plot reflectance plus additional abiotic predictors in two different data mining algorithms. Brown and grey lichens had the best models explaining approximately 40% of lichen cover in those color groups. Both data mining techniques produced similarly good fitting models. Spatial patterns of lichen color-group cover show distinctly different ecological patterns of these color-group species proxies.

Targeted Removal of Ant Colonies in Ecological Experiments, Using Hot Water

PubMed Central

Tschinkel, Walter R.; King, Joshua R.

2007-01-01

Ecological experiments on fire ants cannot, or should not, use poison baits to eliminate the fire ants because such baits are not specific to fire ants, or even to ants. Hot water is an extremely effective and specific killing agent for fire ant colonies, but producing large amounts of hot water in the field, and making the production apparatus mobile have been problematical. The construction and use of a charcoal-fired kiln made from a 55-gal. oil drum lined with a sand-fireclay mixture is described. An automobile heater fan powered from a 12-v battery provided a draft. Dual bilge pumps pumped water from a large tank through a long coil of copper tubing within the kiln to produce 4 to 5 l. of hot water per min. The hot water was collected in 20 l. buckets and poured into fire ant nests previously opened by piercing with a stick. The entire assembly was transported in and operated from the back of a pickup truck. Five experimental plots containing 32 to 38 colonies of the fire ant, Solenopsis invicta, Buren (Hymenoptera: Formicidae), were treated with hot water over a period of two years. All colonies on the treatment plots were treated twice with hot water early in 2004, reducing their numbers to zero. However new colonies were formed, and mature colonies expanded into the plots. A third treatment was made in the spring of 2005, after which fire ant populations were suppressed for over a year. Whereas the 5 control plots contained a total of 166 mostly large colonies, the 5 treatment plots contained no live colonies at all. Averaged over a two-year period, a 70% reduction in total number of colonies was achieved (P < 0.001) on the treatment plots, and a 93% reduction of large, mature colonies. Over this same time span, the number of colonies in control plots remained stable. The reduction in colony numbers on the treatment plots was reflected in the pitfall trap samples that recorded a 60% reduction in fire ants. PMID:20233079

Targeted removal of ant colonies in ecological experiments, using hot water.

PubMed

Tschinkel, Walter R; King, Joshua R

2007-01-01

Ecological experiments on fire ants cannot, or should not, use poison baits to eliminate the fire ants because such baits are not specific to fire ants, or even to ants. Hot water is an extremely effective and specific killing agent for fire ant colonies, but producing large amounts of hot water in the field, and making the production apparatus mobile have been problematical. The construction and use of a charcoal-fired kiln made from a 55-gal. oil drum lined with a sand-fireclay mixture is described. An automobile heater fan powered from a 12-v battery provided a draft. Dual bilge pumps pumped water from a large tank through a long coil of copper tubing within the kiln to produce 4 to 5 l. of hot water per min. The hot water was collected in 20 l. buckets and poured into fire ant nests previously opened by piercing with a stick. The entire assembly was transported in and operated from the back of a pickup truck. Five experimental plots containing 32 to 38 colonies of the fire ant, Solenopsis invicta, Buren (Hymenoptera: Formicidae), were treated with hot water over a period of two years. All colonies on the treatment plots were treated twice with hot water early in 2004, reducing their numbers to zero. However new colonies were formed, and mature colonies expanded into the plots. A third treatment was made in the spring of 2005, after which fire ant populations were suppressed for over a year. Whereas the 5 control plots contained a total of 166 mostly large colonies, the 5 treatment plots contained no live colonies at all. Averaged over a two-year period, a 70% reduction in total number of colonies was achieved (P < 0.001) on the treatment plots, and a 93% reduction of large, mature colonies. Over this same time span, the number of colonies in control plots remained stable. The reduction in colony numbers on the treatment plots was reflected in the pitfall trap samples that recorded a 60% reduction in fire ants.

A method to quantify FRET stoichiometry with phasor plot analysis and acceptor lifetime ingrowth.

PubMed

Chen, WeiYue; Avezov, Edward; Schlachter, Simon C; Gielen, Fabrice; Laine, Romain F; Harding, Heather P; Hollfelder, Florian; Ron, David; Kaminski, Clemens F

2015-03-10

FRET is widely used for the study of protein-protein interactions in biological samples. However, it is difficult to quantify both the FRET efficiency (E) and the affinity (Kd) of the molecular interaction from intermolecular FRET signals in samples of unknown stoichiometry. Here, we present a method for the simultaneous quantification of the complete set of interaction parameters, including fractions of bound donors and acceptors, local protein concentrations, and dissociation constants, in each image pixel. The method makes use of fluorescence lifetime information from both donor and acceptor molecules and takes advantage of the linear properties of the phasor plot approach. We demonstrate the capability of our method in vitro in a microfluidic device and also in cells, via the determination of the binding affinity between tagged versions of glutathione and glutathione S-transferase, and via the determination of competitor concentration. The potential of the method is explored with simulations. Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

Sampling animal sign in heterogeneous environments: how much is enough?

USGS Publications Warehouse

Holbrook, Joseph D.; Arkle, Robert S.; Rachlow, Janet L.; Vierling, Kerri T.; Pilliod, David S.

2015-01-01

Animal ecologists often use animal sign as a surrogate for direct observation of organisms, especially when species are secretive or difficult to observe. Spatial heterogeneity in arid environments makes it challenging to consistently detect and precisely characterize animal sign, which can bias estimates of animal abundance or habitat use. Piute ground squirrels (Urocitellus mollis) and Owyhee harvester ants (Pogonomyrmex salinus) live in arid environments and are fossorial, which can make them difficult to observe directly. Their relative abundance can be assessed using sign (i.e., burrows and nests). We implemented an over-sampling framework (i.e., recorded an excessive amount of information) with two observers to 1) identify a sampling intensity that balanced precision with our resource constraints, and 2) assess classification and detection of squirrel burrows and ant nests across vegetation conditions. We sampled 20 1-ha plots for ground squirrel burrows and ant nests using six 4 m × 100 m belt transects. Analyses of precision and sampling effort indicated that three belt transects covering 1200 m2 per ha provided sufficient precision, while minimizing effort. Regardless of vegetation conditions, counts by two observers were strongly correlated for ground squirrel burrows (r = 0.99, P < 0.001, df = 18; slope = 0.92) and harvester ant nests (r = 0.99, P < 0.001, df = 18; slope = 1.01) indicating observer consistency and perhaps high detection probability. These findings illustrate an approach for evaluating sampling designs in many ecological contexts.

Studying the Surfaces of the Icy Galilean Satellites With JIMO

NASA Astrophysics Data System (ADS)

Prockter, L.; Schenk, P.; Pappalardo, R.

2003-12-01

The Geology subgroup of the Jupiter Icy Moons Orbiter (JIMO) Science Definition Team (SDT) has been working with colleagues within the planetary science community to determine the key outstanding science goals that could be met by the JIMO mission. Geological studies of the Galilean satellites will benefit from the spacecraft's long orbital periods around each satellite, lasting from one to several months. This mission plan allows us to select the optimal viewing conditions to complete global compositional and morphologic mapping at high resolution, and to target geologic features of key scientific interest at very high resolution. Community input to this planning process suggests two major science objectives, along with corresponding measurements proposed to meet them. Objective 1: Determine the origins of surface features and their implications for geological history and evolution. This encompasses investigations of magmatism (intrusion, extrusion, and diapirism), tectonism (isostatic compensation, and styles of faulting, flexure and folding), impact cratering (morphology and distribution), and gradation (erosion and deposition) processes (impact gardening, sputtering, mass wasting and frosts). Suggested measurements to meet this goal include (1) two dimensional global topographic mapping sufficient to discriminate features at a spatial scale of 10 m, and with better than or equal to 1 m relative vertical accuracy, (2) nested images of selected target areas at a range of resolutions down to the submeter pixel scale, (3) global (albedo) mapping at better than or equal to 10 m/pixel, and (4) multispectral global mapping in at least 3 colors at better than or equal to 100 m/pixel, with some subsets at better than 30 m/pixel. Objective 2. Identify and characterize potential landing sites for future missions. A primary component to the success of future landed missions is full characterization of potential sites in terms of their relative age, geological interest, and engineering safety. Measurement requirements suggested to meet this goal (in addition to the requirements of Objective 1) include the acquisition of super-high resolution images of selected target areas (with intermediate context imaging) down to 25 cm/pixel scale. The Geology subgroup passed these recommendations to the full JIMO Science Definition Team, to be incorporated into the final science recommendations for the JIMO mission.

Populations, productivity, and feeding habits of seabirds on St. Lawrence Island, Alaska: Final report

USGS Publications Warehouse

Piatt, John F.; Hatch, Scott A.; Roberts, Bay D.; Lidster, Wayne W.; Wells, John L.; Haney, J. Christopher

1988-01-01

A field camp was established at Kongkok Bay near the southwest cape of St. Lawrence Island and occupied continuously from 24 May to 2 September 1987. Permanent study plots were selected for both cliff and crevice-nesting species, and regular observations were made throughout the breeding season to document attendance patterns, breeding phenology, and success. Periodic collections of adults offshore and of chick meals in the colonies were used to determine the food habits of study species. Additional plots for population monitoring of murres and kittiwakes were established in colonies near Savoonga on the north side of the island, and counts were made there between 23 July and 1 August. Shore based work was supplemented with offshore studies of seabird foraging distribution from the USFWS vessel TIGLAX between 18 August and 3 September 1987.Populations of all study species in the Kongkok Bay area increased since the last study of seabirds there (murres 20, kittiwakes 87, Least Auklets 8, Crested Auklets 442). Pelagic Cormorants, Common Murres, and Thick-billed Murres exhibited average, or above average, breeding success at Kongkok in 1987. Black-legged Kittiwakes exhibited near-total reproductive failure. Crested and Least Auklets had high levels of breeding success after the effects of observer disturbance were taken into account. Predation by microtine rodents and foxes was a significant source of chick mortality on auklets.Feeding concentrations were found primarily north of Gambell in the Anadyr Strait or western Chirikof Basin. Kittiwakes were dispersed widely over the study area. Diets of all species studied were normal and, with the exception of kittiwakes, there was no evidence of problems in obtaining food.Current methods for assessing population changes in cliff-nesting species are considered adequate, but better techniques are needed for crevice-nesting auklets. Time-lapse photography offers the greatest potential for monitoring auklet numbers. A protocol is suggested for monitoring populations of murres, kittiwakes, and auklets at colonies in the Bering and Chukchi Seas. It calls for annual visits to selected colonies during two stages of the nesting cycle to assess numbers and breeding productivity.The breeding failure of Black-legged Kittiwakes on St. Lawrence Island in 1987 was part of a pervasive syndrome of failure in this species observed throughout the Bering Sea and Gulf of Alaska in recent years. The causes of recurrent, widespread breeding failure need to be identified if kittiwakes are to have a role in area-wide population monitoring during the period of Alaskan development by the oil and gas industry.

Diagnostic Performance of CT for Diagnosis of Fat-Poor Angiomyolipoma in Patients With Renal Masses: A Systematic Review and Meta-Analysis.

PubMed

Woo, Sungmin; Suh, Chong Hyun; Cho, Jeong Yeon; Kim, Sang Youn; Kim, Seung Hyup

2017-11-01

The purpose of this article is to systematically review and perform a meta-analysis of the diagnostic performance of CT for diagnosis of fat-poor angiomyolipoma (AML) in patients with renal masses. MEDLINE and EMBASE were systematically searched up to February 2, 2017. We included diagnostic accuracy studies that used CT for diagnosis of fat-poor AML in patients with renal masses, using pathologic examination as the reference standard. Two independent reviewers assessed the methodologic quality using the Quality Assessment of Diagnostic Accuracy Studies-2 tool. Sensitivity and specificity of included studies were calculated and were pooled and plotted in a hierarchic summary ROC plot. Sensitivity analyses using several clinically relevant covariates were performed to explore heterogeneity. Fifteen studies (2258 patients) were included. Pooled sensitivity and specificity were 0.67 (95% CI, 0.48-0.81) and 0.97 (95% CI, 0.89-0.99), respectively. Substantial and considerable heterogeneity was present with regard to sensitivity and specificity (I 2 = 91.21% and 78.53%, respectively). At sensitivity analyses, the specificity estimates were comparable and consistently high across all subgroups (0.93-1.00), but sensitivity estimates showed significant variation (0.14-0.82). Studies using pixel distribution analysis (n = 3) showed substantially lower sensitivity estimates (0.14; 95% CI, 0.04-0.40) compared with the remaining 12 studies (0.81; 95% CI, 0.76-0.85). CT shows moderate sensitivity and excellent specificity for diagnosis of fat-poor AML in patients with renal masses. When methods other than pixel distribution analysis are used, better sensitivity can be achieved.

rFRET: A comprehensive, Matlab-based program for analyzing intensity-based ratiometric microscopic FRET experiments.

PubMed

Nagy, Peter; Szabó, Ágnes; Váradi, Tímea; Kovács, Tamás; Batta, Gyula; Szöllősi, János

2016-04-01

Fluorescence or Förster resonance energy transfer (FRET) remains one of the most widely used methods for assessing protein clustering and conformation. Although it is a method with solid physical foundations, many applications of FRET fall short of providing quantitative results due to inappropriate calibration and controls. This shortcoming is especially valid for microscopy where currently available tools have limited or no capability at all to display parameter distributions or to perform gating. Since users of multiparameter flow cytometry usually apply these tools, the absence of these features in applications developed for microscopic FRET analysis is a significant limitation. Therefore, we developed a graphical user interface-controlled Matlab application for the evaluation of ratiometric, intensity-based microscopic FRET measurements. The program can calculate all the necessary overspill and spectroscopic correction factors and the FRET efficiency and it displays the results on histograms and dot plots. Gating on plots and mask images can be used to limit the calculation to certain parts of the image. It is an important feature of the program that the calculated parameters can be determined by regression methods, maximum likelihood estimation (MLE) and from summed intensities in addition to pixel-by-pixel evaluation. The confidence interval of calculated parameters can be estimated using parameter simulations if the approximate average number of detected photons is known. The program is not only user-friendly, but it provides rich output, it gives the user freedom to choose from different calculation modes and it gives insight into the reliability and distribution of the calculated parameters. © 2016 International Society for Advancement of Cytometry. © 2016 International Society for Advancement of Cytometry.

Vegetation composition and structure of southern coastal plain pine forests: An ecological comparison

USGS Publications Warehouse

Hedman, C.W.; Grace, S.L.; King, S.E.

2000-01-01

Longleaf pine (Pinus palustris) ecosystems are characterized by a diverse community of native groundcover species. Critics of plantation forestry claim that loblolly (Pinus taeda) and slash pine (Pinus elliottii) forests are devoid of native groundcover due to associated management practices. As a result of these practices, some believe that ecosystem functions characteristic of longleaf pine are lost under loblolly and slash pine plantation management. Our objective was to quantify and compare vegetation composition and structure of longleaf, loblolly, and slash pine forests of differing ages, management strategies, and land-use histories. Information from this study will further our understanding and lead to inferences about functional differences among pine cover types. Vegetation and environmental data were collected in 49 overstory plots across Southlands Experiment Forest in Bainbridge, GA. Nested plots, i.e. midstory, understory, and herbaceous, were replicated four times within each overstory plot. Over 400 species were identified. Herbaceous species richness was variable for all three pine cover types. Herbaceous richness for longleaf, slash, and loblolly pine averaged 15, 13, and 12 species per m2, respectively. Longleaf pine plots had significantly more (p < 0.029) herbaceous species and greater herbaceous cover (p < 0.001) than loblolly or slash pine plots. Longleaf and slash pine plots were otherwise similar in species richness and stand structure, both having lower overstory density, midstory density, and midstory cover than loblolly pine plots. Multivariate analyses provided additional perspectives on vegetation patterns. Ordination and classification procedures consistently placed herbaceous plots into two groups which we refer to as longleaf pine benchmark (34 plots) and non-benchmark (15 plots). Benchmark plots typically contained numerous herbaceous species characteristic of relic longleaf pine/wiregrass communities found in the area. Conversely, non-benchmark plots contained fewer species characteristic of relic longleaf pine/wiregrass communities and more ruderal species common to highly disturbed sites. The benchmark group included 12 naturally regenerated longleaf plots and 22 loblolly, slash, and longleaf pine plantation plots encompassing a broad range of silvicultural disturbances. Non-benchmark plots included eight afforested old-field plantation plots and seven cutover plantation plots. Regardless of overstory species, all afforested old fields were low either in native species richness or in abundance. Varying degrees of this groundcover condition were also found in some cutover plantation plots that were classified as non-benchmark. Environmental variables strongly influencing vegetation patterns included agricultural history and fire frequency. Results suggest that land-use history, particularly related to agriculture, has a greater influence on groundcover composition and structure in southern pine forests than more recent forest management activities or pine cover type. Additional research is needed to identify the potential for afforested old fields to recover native herbaceous species. In the interim, high-yield plantation management should initially target old-field sites which already support reduced numbers of groundcover species. Sites which have not been farmed in the past 50-60 years should be considered for longleaf pine restoration and multiple-use objectives, since they have the greatest potential for supporting diverse native vegetation. (C) 2000 Elsevier Science B.V.

Performance of One-Class Classifiers for Invasive Species Mapping using Hyperspectral Remote Sensing

NASA Astrophysics Data System (ADS)

Skowronek, S.; Asner, G. P.; Feilhauer, H.

2016-12-01

Reliable distribution maps are crucial for the monitoring and management of invasive plant species. Remote sensing can provide such maps for larger areas. However, most remote sensing approaches focus on species in a prominent phenological stage, and a systematic assessment of the performance of different one-class classifiers for mapping species in a more inconspicuous phenological stage is missing so far. In this study, we used hyperspectral remote sensing data to detect the invasive grass Phalaris aquatica and the invasive herb Centaurea solstitialisin a pre-flowering stage in the Jasper Ridge Biological Preserve in California. We collected presence-only data, 66 plots for C. solstitialis and 30 plots for P. aquatica, to calibrate a distribution model and additional presence-absence data (166 / 173 plots) to validate model performance. All plots have a size of 3 m x 3 m. The hyperspectral remote sensing imagery was acquired using the Carnegie Airborne Observatory (CAO) visible to shortwave infrared (VSWIR) imaging spectrometer (400-2500 nm range) in May 2015 with a ground sampling distance (pixel size) of 1 m x 1 m. To find the best approach for mapping these species, we compared the performance of three different state-of-the-art classifiers working with presence-only data: Maxent, biased support vector machines and boosted regression trees. The resulting overall accuracies were 72 - 74% for C. solstitialis, and 83 - 88% for P. aquatica. For both species the overall performance was slightly better for Maxent and BRT than for biased SVM. The detection rates for low cover plots were considerably higher for C. solstitialis than for P. aquatica. For C. solstitalis, they ranged between 71 and 75% for plots with less than 15% cover, highlighting the potential of remote sensing to contribute to an early detection. The models relied on different areas of the spectrum, but still produced the same general pattern, which implies that more than one property of a species or a mixed plot can be used to create a viable model. We conclude that the different one-class classifiers we tested do allow detecting the target species in a more inconspicuous phenological stage, with similar success rates.

Impact of the Conservation Reserve Program on duck recruitment in the U.S. Prairie Pothole Region

USGS Publications Warehouse

Reynolds, Ronald E.; Shaffer, Terry L.; Renner, Randy W.; Newton, Wesley E.; Batt, Bruce D.J.

2001-01-01

The U.S. Department of Agriculture (USDA)'s Conservation Reserve Program (CRP) resulted in the conversion of about 1.9 million ha of cropland to perennial grass cover in the Prairie Pothole Region of North Dakota, South Dakota, and northeastern Montana by 1992. Many wildlife managers believed this cover would provide benefits to wildlife, including upland nesting ducks. During 1992-1995, we evaluated success of 5 duck species nesting in CRP fields and nearby Waterfowl Production Areas (WPA) throughout the region. We examined relationships between daily survival rates (DSR) of duck nests in CRP cover and landscape-level habitat and population parameters. We computed DSR of duck nests in other major cover types in our study area from data collected during 1980-1984 (pre-CRP) and 1990-1994 (CRP) periods. We then applied recruitment models to estimate duck production in our study area during peak CRP years (1992-1997) and compared these results with those that simulated the scenario in which cropland was in place of CRP cover (i.e., the CRP had not occurred). DSR were higher in all habitats combined during the CRP period compared to the pre-CRP period. Regressions of DSR in CRP cover on the percent of each study plot in perennial cover and geographic location were significant (P < 0.01) for 4 of 5 duck (Anas spp.) species. Estimated nest success and recruitment rates for the 5 species combined during 1992-1997 were 46% and 30% higher, respectively, with CRP cover on the landscape compared to a scenario where we simulated cropland in place of CRP. Our model estimated an additional 12.4 million recruits from our study area to the fall flight as a consequence of the CRP during 1992-1997. Our results document benefits to 5 duck species in the northern plains associated with a farm program that provided financial incentives to landowners for planting undisturbed grass cover as an alternative to annual crops.

Electricity pylons may be potential foci for the invasion of black cherry Prunus serotina in intensive farmland

NASA Astrophysics Data System (ADS)

Kurek, Przemysław; Sparks, Tim H.; Tryjanowski, Piotr

2015-01-01

Electricity pylons are used by birds for nesting platforms, song posts, roosting, perching and therefore as defecation sites. Consequently we predict that pylons may facilitate the dispersal of endozoochorous plants, such as black cherry Prunus serotina, an invasive species in Europe producing fruits that are often eaten by birds. To test the influence of electricity pylons on the abundance of P. serotina in farmland in western Poland we surveyed 124 areas under pylons and 124 paired control plots within fields under power lines. P. serotina occurred under 81.5% of the investigated pylons but only in 2.4% of the control plots. The vast majority of P. serotina plants occurred under pylons (99.9% of 5820 individuals) of which only 0.7% (42 individuals), found under 12 pylons, were fruiting. The few plants in control plots were all seedlings. The density of plants was related to landscape variables; the occurrence of P. serotina was higher when pylons were situated within arable crops, had a lower level of herb cover and were closer to human settlements. These results suggest that one approach to protect semi natural or even anthropogenic landscapes from exotic and invasive species is by encouraging permanent land use involving some form of annual disturbance, such as hay cutting or ploughing.

Landscape context and scale differentially impact coffee leaf rust, coffee berry borer, and coffee root-knot nematodes.

PubMed

Avelino, Jacques; Romero-Gurdián, Alí; Cruz-Cuellar, Héctor F; Declerck, Fabrice A J

2012-03-01

Crop pest and disease incidences at plot scale vary as a result of landscape effects. Two main effects can be distinguished. First, landscape context provides habitats of variable quality for pests, pathogens, and beneficial and vector organisms. Second, the movements of these organisms are dependent on the connectivity status of the landscape. Most of the studies focus on indirect effects of landscape context on pest abundance through their predators and parasitoids, and only a few on direct effects on pests and pathogens. Here we studied three coffee pests and pathogens, with limited or no pressure from host-specific natural enemies, and with widely varying life histories, to test their relationships with landscape context: a fungus, Hemileia vastatrix, causal agent of coffee leaf rust; an insect, the coffee berry borer, Hypothenemus hampei (Coleoptera: Curculionidae); and root-knot nematodes, Meloidogyne spp. Their incidence was assessed in 29 coffee plots from Turrialba, Costa Rica. In addition, we characterized the landscape context around these coffee plots in 12 nested circular sectors ranging from 50 to 1500 m in radius. We then performed correlation analysis between proportions of different land uses at different scales and coffee pest and disease incidences. We obtained significant positive correlations, peaking at the 150 m radius, between coffee berry borer abundance and proportion of coffee in the landscape. We also found significant positive correlations between coffee leaf rust incidence and proportion of pasture, peaking at the 200 m radius. Even after accounting for plot level predictors of coffee leaf rust and coffee berry borer through covariance analysis, the significance of landscape structure was maintained. We hypothesized that connected coffee plots favored coffee berry borer movements and improved its survival. We also hypothesized that wind turbulence, produced by low-wind-resistance land uses such as pasture, favored removal of coffee leaf rust spore clusters from host surfaces, resulting in increased epidemics. In contrast, root-knot nematode population density was not correlated to landscape context, possibly because nematodes are almost immobile in the soil. We propose fragmenting coffee plots with forest corridors to control coffee berry borer movements between coffee plots without favoring coffee leaf rust dispersal.

Abundance of Harpy and Crested Eagles from a reservoir-impact area in the Low- and Mid-Xingu River.

PubMed

Sanaiotti, T M; Junqueira, T G; Palhares, V; Aguiar-Silva, F H; Henriques, L M P; Oliveira, G; Guimarães, V Y; Castro, V; Mota, D; Trombin, D F; Villar, D N A; Lara, K M; Fernandes, D; Castilho, L; Yosheno, E; Alencar, R M; Cesca, L; Dantas, S M; Laranjeiras, T O; Mathias, P C; Mendonça, C V

2015-08-01

In the Brazilian Amazon, two monospecific genera, the Harpy Eagle and Crested Eagle have low densities and are classified by IUCN as Near Threatened due to habitat loss, deforestation, habitat degradation and hunting. In this study, we evaluate occurrence of these large raptors using the environmental surveys database from Belo Monte Hydroelectric Power Plant. Integrating the dataset from two methods, we plotted a distribution map along the Xingu River, including records over a 276-km stretch of river. Terrestrial surveys (RAPELD method) were more efficient for detecting large raptors than standardized aquatic surveys, although the latter were complementary in areas without modules. About 53% of the records were obtained during activities of wildlife rescue/flushing, vegetation suppression or in transit. Between 2012 and 2014, four Harpy Eagles were removed from the wild; two shooting victims, one injured by collision with power lines and one hit by a vehicle. Also, seven nests were mapped. The mean distance between Harpy Eagle records was 15 km along the river channel, with a mean of 20 km between nests near the channel, which allowed us to estimate 20 possible pairs using the alluvial forest, riverine forest and forest fragments. Territories of another ten pairs will probably be affected by inundation of the Volta Grande channel, which is far from the main river. The average distance between Crested Eagle records was 16 km along the river channel. The only nest found was 1.3 km away from a Harpy Eagle nest. The remnant forests are under threat of being replaced by cattle pastures, so we recommend that permanently protected riparian vegetation borders (APP) be guaranteed, and that forest fragments within 5 km of the river be conserved to maintain eagle populations.

Image Edge Tracking via Ant Colony Optimization

NASA Astrophysics Data System (ADS)

Li, Ruowei; Wu, Hongkun; Liu, Shilong; Rahman, M. A.; Liu, Sanchi; Kwok, Ngai Ming

2018-04-01

A good edge plot should use continuous thin lines to describe the complete contour of the captured object. However, the detection of weak edges is a challenging task because of the associated low pixel intensities. Ant Colony Optimization (ACO) has been employed by many researchers to address this problem. The algorithm is a meta-heuristic method developed by mimicking the natural behaviour of ants. It uses iterative searches to find the optimal solution that cannot be found via traditional optimization approaches. In this work, ACO is employed to track and repair broken edges obtained via conventional Sobel edge detector to produced a result with more connected edges.

Personal manufacturing systems

NASA Astrophysics Data System (ADS)

Bailey, P.

1992-04-01

Personal Manufacturing Systems are the missing link in the automation of the design-to- manufacture process. A PMS will act as a CAD peripheral, closing the loop around the designer enabling him to directly produce models, short production runs or soft tooling with as little fuss as he might otherwise plot a drawing. Whereas conventional 5-axis CNC machines are based on orthogonal axes and simple incremental movements, the PMS is based on a geodetic structure and complex co-ordinated 'spline' movements. The software employs a novel 3D pixel technique for give itself 'spatial awareness' and an expert system to determine the optimum machining conditions. A completely automatic machining strategy can then be determined.

Automatic optic disc segmentation based on image brightness and contrast

NASA Astrophysics Data System (ADS)

Lu, Shijian; Liu, Jiang; Lim, Joo Hwee; Zhang, Zhuo; Tan, Ngan Meng; Wong, Wing Kee; Li, Huiqi; Wong, Tien Yin

2010-03-01

Untreated glaucoma leads to permanent damage of the optic nerve and resultant visual field loss, which can progress to blindness. As glaucoma often produces additional pathological cupping of the optic disc (OD), cupdisc- ratio is one measure that is widely used for glaucoma diagnosis. This paper presents an OD localization method that automatically segments the OD and so can be applied for the cup-disc-ratio based glaucoma diagnosis. The proposed OD segmentation method is based on the observations that the OD is normally much brighter and at the same time have a smoother texture characteristics compared with other regions within retinal images. Given a retinal image we first capture the ODs smooth texture characteristic by a contrast image that is constructed based on the local maximum and minimum pixel lightness within a small neighborhood window. The centre of the OD can then be determined according to the density of the candidate OD pixels that are detected by retinal image pixels of the lowest contrast. After that, an OD region is approximately determined by a pair of morphological operations and the OD boundary is finally determined by an ellipse that is fitted by the convex hull of the detected OD region. Experiments over 71 retinal images of different qualities show that the OD region overlapping reaches up to 90.37% according to the OD boundary ellipses determined by our proposed method and the one manually plotted by an ophthalmologist.

Quantitative lung perfusion evaluation using Fourier decomposition perfusion MRI.

PubMed

Kjørstad, Åsmund; Corteville, Dominique M R; Fischer, Andre; Henzler, Thomas; Schmid-Bindert, Gerald; Zöllner, Frank G; Schad, Lothar R

2014-08-01

To quantitatively evaluate lung perfusion using Fourier decomposition perfusion MRI. The Fourier decomposition (FD) method is a noninvasive method for assessing ventilation- and perfusion-related information in the lungs, where the perfusion maps in particular have shown promise for clinical use. However, the perfusion maps are nonquantitative and dimensionless, making follow-ups and direct comparisons between patients difficult. We present an approach to obtain physically meaningful and quantifiable perfusion maps using the FD method. The standard FD perfusion images are quantified by comparing the partially blood-filled pixels in the lung parenchyma with the fully blood-filled pixels in the aorta. The percentage of blood in a pixel is then combined with the temporal information, yielding quantitative blood flow values. The values of 10 healthy volunteers are compared with SEEPAGE measurements which have shown high consistency with dynamic contrast enhanced-MRI. All pulmonary blood flow (PBF) values are within the expected range. The two methods are in good agreement (mean difference = 0.2 mL/min/100 mL, mean absolute difference = 11 mL/min/100 mL, mean PBF-FD = 150 mL/min/100 mL, mean PBF-SEEPAGE = 151 mL/min/100 mL). The Bland-Altman plot shows a good spread of values, indicating no systematic bias between the methods. Quantitative lung perfusion can be obtained using the Fourier Decomposition method combined with a small amount of postprocessing. Copyright © 2013 Wiley Periodicals, Inc.

Assessment of β-zone peripapillary atrophy by optical coherence tomography and scanning laser ophthalmoscopy imaging in glaucoma patients

PubMed Central

Seidensticker, Florian; Reznicek, Lukas; Mann, Thomas; Hübert, Irene; Kampik, Anselm; Ulbig, Michael; Hirneiss, Christoph; Neubauer, Aljoscha S; Kernt, Marcus

2014-01-01

Purpose To assess β-zone peripapillary atrophy (β-PPA) using spectral domain optical coherence tomography (SD-OCT), scanning laser ophthalmoscopy (SLO), and fundus auto-fluorescence (FAF) imaging in patients with primary open-angle glaucoma with advanced glaucomatous visual field defects. Methods A consecutive, prospective series of 82 study eyes with primary open-angle glaucoma were included in this study. All study participants underwent a full ophthalmic examination followed by SD-OCT, wide-field SLO, and FAF imaging of the optic nerve head and the peripapillary region. Results Eighty-four glaucomatous eyes were included in our prospective study. Correlation analyses for horizontally and vertically obtained β-PPA for all three imaging modalities (color SLO, FAF, and SD-OCT) revealed highest correlations between FAF and color SLO (Pearson correlation coefficient: 0.904 [P<0.001] for horizontal β-PPA and 0.786 [P<0.001] for vertical β-PPA). Bland–Altman plotting revealed highest agreements between color SLO and FAF, with −2.1 pixels ±1.96 standard deviation (SD) for horizontal β-PPA, SD: 10.5 pixels and 2.4 pixels ±1.96 SD for vertical β-PPA. Conclusion β-PPA can be assessed using en-face SLO and cross-sectional SD-OCT imaging. Correlation analyses revealed highest correlations between color SLO and FAF imaging, while correlations between SLO and SD-OCT were weak. A more precise structural definition of β-PPA is needed. PMID:25061270

Optical design of an athermalised dual field of view step zoom optical system in MWIR

NASA Astrophysics Data System (ADS)

Kucukcelebi, Doruk

2017-08-01

In this paper, the optical design of an athermalised dual field of view step zoom optical system in MWIR (3.7μm - 4.8μm) is described. The dual field of view infrared optical system is designed based on the principle of passive athermalization method not only to achieve athermal optical system but also to keep the high image quality within the working temperature between -40°C and +60°C. The infrared optical system used in this study had a 320 pixel x 256 pixel resolution, 20μm pixel pitch size cooled MWIR focal plane array detector. In this study, the step zoom mechanism, which has the axial motion due to consisting of a lens group, is considered to simplify mechanical structure. The optical design was based on moving a single lens along the optical axis for changing the optical system's field of view not only to reduce the number of moving parts but also to athermalize for the optical system. The optical design began with an optimization process using paraxial optics when first-order optics parameters are determined. During the optimization process, in order to reduce aberrations, such as coma, astigmatism, spherical and chromatic aberrations, aspherical surfaces were used. As a result, athermalised dual field of view step zoom optical design is proposed and the performance of the design using proposed method was verified by providing the focus shifts, spot diagrams and MTF analyzes' plots.

The spatial sensitivity of the spectral diversity-biodiversity relationship: an experimental test in a prairie grassland.

PubMed

Wang, Ran; Gamon, John A; Cavender-Bares, Jeannine; Townsend, Philip A; Zygielbaum, Arthur I

2018-03-01

Remote sensing has been used to detect plant biodiversity in a range of ecosystems based on the varying spectral properties of different species or functional groups. However, the most appropriate spatial resolution necessary to detect diversity remains unclear. At coarse resolution, differences among spectral patterns may be too weak to detect. In contrast, at fine resolution, redundant information may be introduced. To explore the effect of spatial resolution, we studied the scale dependence of spectral diversity in a prairie ecosystem experiment at Cedar Creek Ecosystem Science Reserve, Minnesota, USA. Our study involved a scaling exercise comparing synthetic pixels resampled from high-resolution images within manipulated diversity treatments. Hyperspectral data were collected using several instruments on both ground and airborne platforms. We used the coefficient of variation (CV) of spectral reflectance in space as the indicator of spectral diversity and then compared CV at different scales ranging from 1 mm 2 to 1 m 2 to conventional biodiversity metrics, including species richness, Shannon's index, Simpson's index, phylogenetic species variation, and phylogenetic species evenness. In this study, higher species richness plots generally had higher CV. CV showed higher correlations with Shannon's index and Simpson's index than did species richness alone, indicating evenness contributed to the spectral diversity. Correlations with species richness and Simpson's index were generally higher than with phylogenetic species variation and evenness measured at comparable spatial scales, indicating weaker relationships between spectral diversity and phylogenetic diversity metrics than with species diversity metrics. High resolution imaging spectrometer data (1 mm 2 pixels) showed the highest sensitivity to diversity level. With decreasing spatial resolution, the difference in CV between diversity levels decreased and greatly reduced the optical detectability of biodiversity. The optimal pixel size for distinguishing α diversity in these prairie plots appeared to be around 1 mm to 10 cm, a spatial scale similar to the size of an individual herbaceous plant. These results indicate a strong scale-dependence of the spectral diversity-biodiversity relationships, with spectral diversity best able to detect a combination of species richness and evenness, and more weakly detecting phylogenetic diversity. These findings can be used to guide airborne studies of biodiversity and develop more effective large-scale biodiversity sampling methods. ©2018 The Authors Ecological Applications published by Wiley Periodicals, Inc. on behalf of Ecological Society of America.

Mapping burn severity, pine beetle infestation, and their interaction at the High Park Fire

NASA Astrophysics Data System (ADS)

Stone, Brandon

North America's western forests are experiencing wildfire and mountain pine beetle (MPB) disturbances that are unprecedented in the historic record, but it remains unclear whether and how MPB infestation influences post-infestation fire behavior. The 2012 High Park Fire burned in an area that's estimated to have begun a MPB outbreak cycle within five years before the wildfire, resulting in a landscape in which disturbance interactions can be studied. A first step in studying these interactions is mapping regions of beetle infestation and post-fire disturbance. We implemented an approach for mapping beetle infestation and burn severity using as source data three 5 m resolution RapidEye satellite images (two pre-fire, one post-fire). A two-tiered methodology was developed to overcome the spatial limitations of many classification approaches through explicit analyses at both pixel and plot level. Major land cover classes were photo-interpreted at the plot-level and their spectral signature used to classify 5 m images. A new image was generated at 25 m resolution by tabulating the fraction of coincident 5 m pixels in each cover class. The original photo interpretation was then used to train a second classification using as its source image the new 25 m image. Maps were validated using k-fold analysis of the original photo interpretation, field data collected immediately post-fire, and publicly available classifications. To investigate the influence of pre-fire beetle infestation on burn severity within the High Park Fire, we fit a log-linear model of conditional independence to our thematic maps after controlling for forest cover class and slope aspect. Our analysis revealed a high co-occurrence of severe burning and beetle infestation within high elevation lodgepole pine stands, but did not find statistically significant evidence that infected stands were more likely to burn severely than similar uninfected stands. Through an inspection of the year-to-year changes in the class fraction signatures of pixels classified as MPB infestation, we were able to observe increases in infection extent and intensity in the year before the fire. The resulting maps will help to increase our understanding of the process that contributed to the High Park Fire, and we believe that the novel classification approach will allow for improved characterization of forest disturbances.

Scale and Sampling Effects on Floristic Quality

PubMed Central

2016-01-01

Floristic Quality Assessment (FQA) is increasingly influential for making land management decisions, for directing conservation policy, and for research. But, the basic ecological properties and limitations of its metrics are ill defined and not well understood–especially those related to sample methods and scale. Nested plot data from a remnant tallgrass prairie sampled annually over a 12-year period, were used to investigate FQA properties associated with species detection rates, species misidentification rates, sample year, and sample grain/area. Plot size had no apparent effect on Mean C (an area’s average Floristic Quality level), nor did species detection levels above 65% detection. Simulated species misidentifications only affected Mean C values at greater than 10% in large plots, when the replaced species were randomly drawn from the broader county-wide species pool. Finally, FQA values were stable over the 12-year study, meaning that there was no evidence that the metrics exhibit year effects. The FQA metric Mean C is demonstrated to be robust to varied sample methodologies related to sample intensity (plot size, species detection rate), as well as sample year. These results will make FQA measures even more appealing for informing land-use decisions, policy, and research for two reasons: 1) The sampling effort needed to generate accurate and consistent site assessments with FQA measures is shown to be far lower than what has previously been assumed, and 2) the stable properties and consistent performance of metrics with respect to sample methods will allow for a remarkable level of comparability of FQA values from different sites and datasets compared to other commonly used ecological metrics. PMID:27489959

Mapping the above and belowground biomass in three landscapes in Cameroon, Rwanda and DRC: pilot cases in REDD+ pilot project.

NASA Astrophysics Data System (ADS)

Sufo Kankeu, R.

2017-12-01

A number of biomass/carbon maps have been recently produced using different approaches and despite their comparison there is still a gap. To fill this gap there is a need to provide accurate maps based on the field data on all types of land use and land cover. Based on the field data from plots established in three pilot projects around Virunga National park in Rwanda, Tri-national Sangha landscape in Cameroon and lac Télé-Lac Tumba landscape in DRC, this paper intend to analyse the relationship between land use change and biomass and present the variability through biomass/carbon maps. The above and belowground biomass was calculated from 95 nested plots of 20 meters radius. The value of biomass/carbon per plot were thus used to elaborate carbon maps of each study site. In the same the way the correlation between the land use and underground and above ground carbon stock were analysed using geographically weighted regression. These data have been joint with classified Spot 5 image and aggregated to come out will acceptable result. Results show that there is a strong relationship between land use in various project sites and the carbon stock related, the change of a forest cover directly impact on carbon stock/biomass.in the same way carbon map realized base on field data and IDW, Kriging or spline module show an idea on the carbon distribution but the maps are not accurate giving the distance between plots,

Climate change at northern latitudes: rising atmospheric humidity decreases transpiration, N-uptake and growth rate of hybrid aspen.

PubMed

Tullus, Arvo; Kupper, Priit; Sellin, Arne; Parts, Leopold; Sõber, Jaak; Tullus, Tea; Lõhmus, Krista; Sõber, Anu; Tullus, Hardi

2012-01-01

At northern latitudes a rise in atmospheric humidity and precipitation is predicted as a consequence of global climate change. We studied several growth and functional traits of hybrid aspen (Populus tremula L.×P. tremuloides Michx.) in response to elevated atmospheric humidity (on average 7% over the ambient level) in a free air experimental facility during three growing seasons (2008-2010) in Estonia, which represents northern temperate climate (boreo-nemoral zone). Data were collected from three humidified (H) and three control (C) plots, and analysed using nested linear models. Elevated air humidity significantly reduced height, stem diameter and stem volume increments and transpiration of the trees whereas these effects remained highly significant also after considering the side effects from soil-related confounders within the 2.7 ha study area. Tree leaves were smaller, lighter and had lower leaf mass per area (LMA) in H plots. The magnitude and significance of the humidity treatment effect--inhibition of above-ground growth rate--was more pronounced in larger trees. The lower growth rate in the humidified plots can be partly explained by a decrease in transpiration-driven mass flow of NO(3) (-) in soil, resulting in a significant reduction in the measured uptake of N to foliage in the H plots. The results suggest that the potential growth improvement of fast-growing trees like aspens, due to increasing temperature and atmospheric CO(2) concentration, might be smaller than expected at high latitudes if a rise in atmospheric humidity simultaneously takes place.

Climate Change at Northern Latitudes: Rising Atmospheric Humidity Decreases Transpiration, N-Uptake and Growth Rate of Hybrid Aspen

PubMed Central

Tullus, Arvo; Kupper, Priit; Sellin, Arne; Parts, Leopold; Sõber, Jaak; Tullus, Tea; Lõhmus, Krista; Sõber, Anu; Tullus, Hardi

2012-01-01

At northern latitudes a rise in atmospheric humidity and precipitation is predicted as a consequence of global climate change. We studied several growth and functional traits of hybrid aspen (Populus tremula L.×P. tremuloides Michx.) in response to elevated atmospheric humidity (on average 7% over the ambient level) in a free air experimental facility during three growing seasons (2008–2010) in Estonia, which represents northern temperate climate (boreo-nemoral zone). Data were collected from three humidified (H) and three control (C) plots, and analysed using nested linear models. Elevated air humidity significantly reduced height, stem diameter and stem volume increments and transpiration of the trees whereas these effects remained highly significant also after considering the side effects from soil-related confounders within the 2.7 ha study area. Tree leaves were smaller, lighter and had lower leaf mass per area (LMA) in H plots. The magnitude and significance of the humidity treatment effect – inhibition of above-ground growth rate – was more pronounced in larger trees. The lower growth rate in the humidified plots can be partly explained by a decrease in transpiration-driven mass flow of NO3 − in soil, resulting in a significant reduction in the measured uptake of N to foliage in the H plots. The results suggest that the potential growth improvement of fast-growing trees like aspens, due to increasing temperature and atmospheric CO2 concentration, might be smaller than expected at high latitudes if a rise in atmospheric humidity simultaneously takes place. PMID:22880067

Landscape complexity and soil moisture variation in south Georgia, USA, for remote sensing applications

NASA Astrophysics Data System (ADS)

Giraldo, Mario A.; Bosch, David; Madden, Marguerite; Usery, Lynn; Kvien, Craig

2008-08-01

SummaryThis research addressed the temporal and spatial variation of soil moisture (SM) in a heterogeneous landscape. The research objective was to investigate soil moisture variation in eight homogeneous 30 by 30 m plots, similar to the pixel size of a Landsat Thematic Mapper (TM) or Enhanced Thematic Mapper plus (ETM+) image. The plots were adjacent to eight stations of an in situ soil moisture network operated by the United States Department of Agriculture-Agriculture Research Service USDA-ARS in Tifton, GA. We also studied five adjacent agricultural fields to examine the effect of different landuses/land covers (LULC) (grass, orchard, peanuts, cotton and bare soil) on the temporal and spatial variation of soil moisture. Soil moisture field data were collected on eight occasions throughout 2005 and January 2006 to establish comparisons within and among eight homogeneous plots. Consistently throughout time, analysis of variance (ANOVA) showed high variation in the soil moisture behavior among the plots and high homogeneity in the soil moisture behavior within them. A precipitation analysis for the eight sampling dates throughout the year 2005 showed similar rainfall conditions for the eight study plots. Therefore, soil moisture variation among locations was explained by in situ local conditions. Temporal stability geostatistical analysis showed that soil moisture has high temporal stability within the small plots and that a single point reading can be used to monitor soil moisture status for the plot within a maximum 3% volume/volume (v/v) soil moisture variation. Similarly, t-statistic analysis showed that soil moisture status in the upper soil layer changes within 24 h. We found statistical differences in the soil moisture between the different LULC in the agricultural fields as well as statistical differences between these fields and the adjacent 30 by 30 m plots. From this analysis, it was demonstrated that spatial proximity is not enough to produce similar soil moisture, since t-test's among adjacent plots with different LULCs showed significant differences. These results confirm that a remote sensing approach that considers homogeneous LULC landscape fragments can be used to identify landscape units of similar soil moisture behavior under heterogeneous landscapes. In addition, the in situ USDA-ARS network will serve better in remote sensing studies in which sensors with fine spatial resolution are evaluated. This study is a first step towards identifying landscape units that can be monitored using the single point reading of the USDA-ARS stations network.

Landscape complexity and soil moisture variation in south Georgia, USA, for remote sensing applications

USGS Publications Warehouse

Giraldo, M.A.; Bosch, D.; Madden, M.; Usery, L.; Kvien, Craig

2008-01-01

This research addressed the temporal and spatial variation of soil moisture (SM) in a heterogeneous landscape. The research objective was to investigate soil moisture variation in eight homogeneous 30 by 30 m plots, similar to the pixel size of a Landsat Thematic Mapper (TM) or Enhanced Thematic Mapper plus (ETM+) image. The plots were adjacent to eight stations of an in situ soil moisture network operated by the United States Department of Agriculture-Agriculture Research Service USDA-ARS in Tifton, GA. We also studied five adjacent agricultural fields to examine the effect of different landuses/land covers (LULC) (grass, orchard, peanuts, cotton and bare soil) on the temporal and spatial variation of soil moisture. Soil moisture field data were collected on eight occasions throughout 2005 and January 2006 to establish comparisons within and among eight homogeneous plots. Consistently throughout time, analysis of variance (ANOVA) showed high variation in the soil moisture behavior among the plots and high homogeneity in the soil moisture behavior within them. A precipitation analysis for the eight sampling dates throughout the year 2005 showed similar rainfall conditions for the eight study plots. Therefore, soil moisture variation among locations was explained by in situ local conditions. Temporal stability geostatistical analysis showed that soil moisture has high temporal stability within the small plots and that a single point reading can be used to monitor soil moisture status for the plot within a maximum 3% volume/volume (v/v) soil moisture variation. Similarly, t-statistic analysis showed that soil moisture status in the upper soil layer changes within 24 h. We found statistical differences in the soil moisture between the different LULC in the agricultural fields as well as statistical differences between these fields and the adjacent 30 by 30 m plots. From this analysis, it was demonstrated that spatial proximity is not enough to produce similar soil moisture, since t-test's among adjacent plots with different LULCs showed significant differences. These results confirm that a remote sensing approach that considers homogeneous LULC landscape fragments can be used to identify landscape units of similar soil moisture behavior under heterogeneous landscapes. In addition, the in situ USDA-ARS network will serve better in remote sensing studies in which sensors with fine spatial resolution are evaluated. This study is a first step towards identifying landscape units that can be monitored using the single point reading of the USDA-ARS stations network. ?? 2008 Elsevier B.V.

Fast semivariogram computation using FPGA architectures

NASA Astrophysics Data System (ADS)

Lagadapati, Yamuna; Shirvaikar, Mukul; Dong, Xuanliang

2015-02-01

The semivariogram is a statistical measure of the spatial distribution of data and is based on Markov Random Fields (MRFs). Semivariogram analysis is a computationally intensive algorithm that has typically seen applications in the geosciences and remote sensing areas. Recently, applications in the area of medical imaging have been investigated, resulting in the need for efficient real time implementation of the algorithm. The semivariogram is a plot of semivariances for different lag distances between pixels. A semi-variance, γ(h), is defined as the half of the expected squared differences of pixel values between any two data locations with a lag distance of h. Due to the need to examine each pair of pixels in the image or sub-image being processed, the base algorithm complexity for an image window with n pixels is O(n2). Field Programmable Gate Arrays (FPGAs) are an attractive solution for such demanding applications due to their parallel processing capability. FPGAs also tend to operate at relatively modest clock rates measured in a few hundreds of megahertz, but they can perform tens of thousands of calculations per clock cycle while operating in the low range of power. This paper presents a technique for the fast computation of the semivariogram using two custom FPGA architectures. The design consists of several modules dedicated to the constituent computational tasks. A modular architecture approach is chosen to allow for replication of processing units. This allows for high throughput due to concurrent processing of pixel pairs. The current implementation is focused on isotropic semivariogram computations only. Anisotropic semivariogram implementation is anticipated to be an extension of the current architecture, ostensibly based on refinements to the current modules. The algorithm is benchmarked using VHDL on a Xilinx XUPV5-LX110T development Kit, which utilizes the Virtex5 FPGA. Medical image data from MRI scans are utilized for the experiments. Computational speedup is measured with respect to Matlab implementation on a personal computer with an Intel i7 multi-core processor. Preliminary simulation results indicate that a significant advantage in speed can be attained by the architectures, making the algorithm viable for implementation in medical devices

Multispectral and geomorphic studies of processed Voyager 2 images of Europa

NASA Technical Reports Server (NTRS)

Meier, T. A.

1984-01-01

High resolution images of Europa taken by the Voyager 2 spacecraft were used to study a portion of Europa's dark lineations and the major white line feature Agenor Linea. Initial image processing of images 1195J2-001 (violet filter), 1198J2-001 (blue filter), 1201J2-001 (orange filter), and 1204J2-001 (ultraviolet filter) was performed at the U.S.G.S. Branch of Astrogeology in Flagstaff, Arizona. Processing was completed through the stages of image registration and color ratio image construction. Pixel printouts were used in a new technique of linear feature profiling to compensate for image misregistration through the mapping of features on the printouts. In all, 193 dark lineation segments were mapped and profiled. The more accurate multispectral data derived by this method was plotted using a new application of the ternary diagram, with orange, blue, and violet relative spectral reflectances serving as end members. Statistical techniques were then applied to the ternary diagram plots. The image products generated at LPI were used mainly to cross-check and verify the results of the ternary diagram analysis.

Scaling of hydrologic and erosion parameters derived from rainfall simulation

NASA Astrophysics Data System (ADS)

Sheridan, Gary; Lane, Patrick; Noske, Philip; Sherwin, Christopher

2010-05-01

Rainfall simulation experiments conducted at the temporal scale of minutes and the spatial scale of meters are often used to derive parameters for erosion and water quality models that operate at much larger temporal and spatial scales. While such parameterization is convenient, there has been little effort to validate this approach via nested experiments across these scales. In this paper we first review the literature relevant to some of these long acknowledged issues. We then present rainfall simulation and erosion plot data from a range of sources, including mining, roading, and forestry, to explore the issues associated with the scaling of parameters such as infiltration properties and erodibility coefficients.

Avian community responses to juniper woodland structure and thinning treatments on the Colorado Plateau

USGS Publications Warehouse

Crow, Claire; van Riper, Charles

2011-01-01

We also studied responses of breeding birds to mechanical reduction of pinyon-juniper woodlands scattered across sagebrush steppe in 11 control and 9 treatment plots at Grand Staircase-Escalante National Monument, Utah, in 2005 and 2006. We surveyed birds in 3.1-ha (7.6-acre) plots during the breeding season before and following treatment. Thinning in April 2006 removed a mean of 92 percent (standard error = 6.4 percent) of the live trees from treatment plots. Two of 14 species, Gray Vireo (Vireo vicinior) and Brown-headed Cowbird (Molothrus ater), were not detected after thinning. Shrub-nesting birds, including sagebrush specialist Brewer's Sparrow (Spizella breweri), increased in relative abundance in treatment areas compared to controls. However, some species may exhibit a time lag in response, and further changes in community composition and abundance could result. Our findings lend support to the concept that multiple small-scale fuels-reduction treatments, applied over the landscape, may provide the variety of successional stages needed to support a full assemblage of avian species in pinyon-juniper woodlands on the Colorado Plateau. Limiting scale and increasing precision of fuels-reduction projects in pinyon-juniper vegetation communities may maximize the benefits of management to both the pinyon-juniper and sagebrush steppe avian communities. We conclude that small-scale fuels-reduction treatments can benefit many bird species while reducing fire risk and restoring an ecological balance.

Multi-Scale Mapping of Vegetation Biomass

NASA Astrophysics Data System (ADS)

Hudak, A. T.; Fekety, P.; Falkowski, M. J.; Kennedy, R. E.; Crookston, N.; Smith, A. M.; Mahoney, P.; Glenn, N. F.; Dong, J.; Kane, V. R.; Woodall, C. W.

2016-12-01

Vegetation biomass mapping at multiple scales is important for carbon inventory and monitoring, reporting, and verification (MRV). Project-level lidar collections allow biomass estimation with high confidence where associated with field plot measurements. Predictive models developed from such datasets are customarily used to generate landscape-scale biomass maps. We tested the feasibility of predicting biomass in landscapes surveyed with lidar but without field plots, by withholding plot datasets from a reduced model applied to the landscapes, and found support for a generalized model in the northern Idaho ecoregion. We are also upscaling a generalized model to all forested lands in Idaho. Our regional modeling approach is to sample the 30-m biomass predictions from the landscape-scale maps and use them to train a regional biomass model, using Landsat time series, topographic derivatives, and climate variables as predictors. Our regional map validation approach is to aggregate the regional, annual biomass predictions to the county level and compare them to annual county-level biomass summarized independently from systematic, field-based, annual inventories conducted by the US Forest Inventory and Analysis (FIA) Program nationally. A national-scale forest cover map generated independently from 2010 PALSAR data at 25-m resolution is being used to mask non-forest pixels from the aggregations. Effects of climate change on future regional biomass stores are also being explored, using biomass estimates projected from stand-level inventory data collected in the National Forests and comparing them to FIA plot data collected independently on public and private lands, projected under the same climate change scenarios, with disturbance trends extracted from the Landsat time series. Our ultimate goal is to demonstrate, focusing on the ecologically diverse Northwest region of the USA, a carbon monitoring system (CMS) that is accurate, objective, repeatable, and transparent.

Effects of vegetation, corridor width and regional land use on early successional birds on powerline corridors.

PubMed

Askins, Robert A; Folsom-O'Keefe, Corrine M; Hardy, Margaret C

2012-01-01

Powerline rights-of-way (ROWs) often provide habitat for early successional bird species that have suffered long-term population declines in eastern North America. To determine how the abundance of shrubland birds varies with habitat within ROW corridors and with land use patterns surrounding corridors, we ran Poisson regression models on data from 93 plots on ROWs and compared regression coefficients. We also determined nest success rates on a 1-km stretch of ROW. Seven species of shrubland birds were common in powerline corridors. However, the nest success rates for prairie warbler (Dendroica discolor) and field sparrow (Spizella pusilla) were <21%, which is too low to compensate for estimated annual mortality. Some shrubland bird species were more abundant on narrower ROWs or at sites with lower vegetation or particular types of vegetation, indicating that vegetation management could be refined to favor species of high conservation priority. Also, several species were more abundant in ROWs traversing unfragmented forest than those near residential areas or farmland, indicating that corridors in heavily forested regions may provide better habitat for these species. In the area where we monitored nests, brood parasitism by brown-headed cowbirds (Molothrus ater) occurred more frequently close to a residential area. Although ROWs support dense populations of shrubland birds, those in more heavily developed landscapes may constitute sink habitat. ROWs in extensive forests may contribute more to sustaining populations of early successional birds, and thus may be the best targets for habitat management.

Effects of Vegetation, Corridor Width and Regional Land Use on Early Successional Birds on Powerline Corridors

PubMed Central

Askins, Robert A.; Folsom-O'Keefe, Corrine M.; Hardy, Margaret C.

2012-01-01

Powerline rights-of-way (ROWs) often provide habitat for early successional bird species that have suffered long-term population declines in eastern North America. To determine how the abundance of shrubland birds varies with habitat within ROW corridors and with land use patterns surrounding corridors, we ran Poisson regression models on data from 93 plots on ROWs and compared regression coefficients. We also determined nest success rates on a 1-km stretch of ROW. Seven species of shrubland birds were common in powerline corridors. However, the nest success rates for prairie warbler (Dendroica discolor) and field sparrow (Spizella pusilla) were <21%, which is too low to compensate for estimated annual mortality. Some shrubland bird species were more abundant on narrower ROWs or at sites with lower vegetation or particular types of vegetation, indicating that vegetation management could be refined to favor species of high conservation priority. Also, several species were more abundant in ROWs traversing unfragmented forest than those near residential areas or farmland, indicating that corridors in heavily forested regions may provide better habitat for these species. In the area where we monitored nests, brood parasitism by brown-headed cowbirds (Molothrus ater) occurred more frequently close to a residential area. Although ROWs support dense populations of shrubland birds, those in more heavily developed landscapes may constitute sink habitat. ROWs in extensive forests may contribute more to sustaining populations of early successional birds, and thus may be the best targets for habitat management. PMID:22363660

Colony mapping: A new technique for monitoring crevice-nesting seabirds

USGS Publications Warehouse

Renner, H.M.; Renner, M.; Reynolds, J.H.; Harping, A.M.A.; Jones, I.L.; Irons, D.B.; Byrd, G.V.

2006-01-01

Monitoring populations of auklets and other crevice-nesting seabirds remains problematic, although numerous methods have been attempted since the mid-1960s. Anecdotal evidence suggests several large auklet colonies have recently decreased in both abundance and extent, concurrently with vegetation encroachment and succession. Quantifying changes in the geographical extent of auklet colonies may be a useful alternative to monitoring population size directly. We propose a standardized method for colony mapping using a randomized systematic grid survey with two components: a simple presence/absence survey and an auklet evidence density survey. A quantitative auklet evidence density index was derived from the frequency of droppings and feathers. This new method was used to map the colony on St. George Island in the southeastern Bering Sea and results were compared to previous colony mapping efforts. Auklet presence was detected in 62 of 201 grid cells (each grid cell = 2500 m2) by sampling a randomly placed 16 m2 plot in each cell; estimated colony area = 155 000 m2. The auklet evidence density index varied by two orders of magnitude across the colony and was strongly correlated with means of replicated counts of birds socializing on the colony surface. Quantitatively mapping all large auklet colonies is logistically feasible using this method and would provide an important baseline for monitoring colony status. Regularly monitoring select colonies using this method may be the best means of detecting changes in distribution and population size of crevice-nesting seabirds. ?? The Cooper Ornithological Society 2006.

Variability of soil properties within large termite mounds in South Katanga, DRC - origins and applications.

NASA Astrophysics Data System (ADS)

Erens, Hans; Bazirake Mujinya, Basile; Boeckx, Pascal; Baert, Geert; Mees, Florias; Van Ranst, Eric

2014-05-01

The miombo woodlands of South Katanga (D.R. Congo) are characterized by a high spatial density of large conic termite mounds built by Macrotermes falciger (3 to 5 ha-1). With an average height of 5.05 m and diameter of 14.88 m, these are some of the largest biogenic structures in the world. The mound material is known to differ considerably from the surrounding Ferralsols. Specifically, mound material exhibits a finer texture, higher CEC and exchangeable basic cation content, lower organic matter content, and an accumulation of phosphorous, nitrate and secondary carbonates. However, as demonstrated by the present study, these soil properties are far from uniform within the volume of the mound. The termites' nesting and foraging activity, combined with pedogenic processes over extended periods of time, generates a wide range of physical, chemical, and biological conditions in different parts of the mound. Analysis of samples taken along a cross-section of a large active mound allowed generating contour plots, thus visualizing the variability of soil properties within the mound. The central columns of three other mounds were sampled to confirm apparent trends. The contour plots show that the mounds comprise four functional zones: (i) the active nest, found at the top; (ii) an accumulation zone , in more central parts of the mound; (iii) a dense inactive zone, surrounding the accumulation zone and consisting of accumulated erosion products from former active nests; and (iv) the outer mantle, characterized by intense varied biological activity and by a well-developed soil structure. Intermittent leaching plays a key role in explaining these patterns. Using radiocarbon dating, we found that some of these mounds are at least 2000 years old. Their current size and shape is likely the result of successive stages of erosion and rebuilding, in the course of alternating periods of mound abandonment and recolonization. Over time, termite foraging combined with limited leaching results in the mounds becoming nutrient sinks. As the mounds contain over 1000 m³ ha-1 of soil, they represent a considerable part of the total nutrient budget of the ecosystem. A recent development in the Lubumbashi region is the advent of large-scale pivot-irrigated agriculture. The termite mounds in new fields are completely leveled, thus dispersing the accumulated nutrients. Our study predicts short- and long-term effects of termite mound spreading on soil fertility.

Why are there more arboreal ant species in primary than in secondary tropical forests?

PubMed

Klimes, Petr; Idigel, Cliffson; Rimandai, Maling; Fayle, Tom M; Janda, Milan; Weiblen, George D; Novotny, Vojtech

2012-09-01

1. Species diversity of arboreal arthropods tends to increase during rainforest succession so that primary forest communities comprise more species than those from secondary vegetation, but it is not well understood why. Primary forests differ from secondary forests in a wide array of factors whose relative impacts on arthropod diversity have not yet been quantified. 2. We assessed the effects of succession-related determinants on a keystone ecological group, arboreal ants, by conducting a complete census of 1332 ant nests from all trees with diameter at breast height ≥ 5 cm occurring within two (unreplicated) 0·32-ha plots, one in primary and one in secondary lowland forest in New Guinea. Specifically, we used a novel rarefaction-based approach to match number, size distribution and taxonomic structure of trees in primary forest communities to those in secondary forest and compared the resulting numbers of ant species. 3. In total, we recorded 80 nesting ant species from 389 trees in primary forest but only 42 species from 295 trees in secondary forest. The two habitats did not differ in the mean number of ant species per tree or in the relationship between ant diversity and tree size. However, the between-tree similarity of ant communities was higher in secondary forest than in primary forest, as was the between-tree nest site similarity, suggesting that secondary trees were more uniform in providing nesting microhabitats. 4. Using our rarefaction method, the difference in ant species richness between two forest types was partitioned according to the effects of higher tree density (22·6%), larger tree size (15·5%) and higher taxonomic diversity of trees (14·3%) in primary than in secondary forest. The remaining difference (47·6%) was because of higher beta diversity of ant communities between primary forest trees. In contrast, difference in nest density was explained solely by difference in tree density. 5. Our study shows that reduction in plant taxonomic diversity in secondary forests is not the main driver of the reduction in canopy ant species richness. We suggest that the majority of arboreal species losses in secondary tropical forests are attributable to simpler vegetation structure, combined with lower turnover of nesting microhabitats between trees. © 2012 The Authors. Journal of Animal Ecology © 2012 British Ecological Society.

J plots: a new method for characterizing structures in the interstellar medium

NASA Astrophysics Data System (ADS)

Jaffa, S. E.; Whitworth, A. P.; Clarke, S. D.; Howard, A. D. P.

2018-06-01

Large-scale surveys have brought about a revolution in astronomy. To analyse the resulting wealth of data, we need automated tools to identify, classify, and quantify the important underlying structures. We present here a method for classifying and quantifying a pixelated structure, based on its principal moments of inertia. The method enables us to automatically detect, and objectively compare, centrally condensed cores, elongated filaments, and hollow rings. We illustrate the method by applying it to (i) observations of surface density from Hi-GAL, and (ii) simulations of filament growth in a turbulent medium. We limit the discussion here to 2D data; in a future paper, we will extend the method to 3D data.

Airborne Hyperspectral Imagery for the Detection of Agricultural Crop Stress

NASA Technical Reports Server (NTRS)

Cassady, Philip E.; Perry, Eileen M.; Gardner, Margaret E.; Roberts, Dar A.

2001-01-01

Multispectral digital imagery from aircraft or satellite is presently being used to derive basic assessments of crop health for growers and others involved in the agricultural industry. Research indicates that narrow band stress indices derived from hyperspectral imagery should have improved sensitivity to provide more specific information on the type and cause of crop stress, Under funding from the NASA Earth Observation Commercial Applications Program (EOCAP) we are identifying and evaluating scientific and commercial applications of hyperspectral imagery for the remote characterization of agricultural crop stress. During the summer of 1999 a field experiment was conducted with varying nitrogen treatments on a production corn-field in eastern Nebraska. The AVIRIS (Airborne Visible-Infrared Imaging Spectrometer) hyperspectral imager was flown at two critical dates during crop development, at two different altitudes, providing images with approximately 18m pixels and 3m pixels. Simultaneous supporting soil and crop characterization included spectral reflectance measurements above the canopy, biomass characterization, soil sampling, and aerial photography. In this paper we describe the experiment and results, and examine the following three issues relative to the utility of hyperspectral imagery for scientific study and commercial crop stress products: (1) Accuracy of reflectance derived stress indices relative to conventional measures of stress. We compare reflectance-derived indices (both field radiometer and AVIRIS) with applied nitrogen and with leaf level measurement of nitrogen availability and chlorophyll concentrations over the experimental plots (4 replications of 5 different nitrogen levels); (2) Ability of the hyperspectral sensors to detect sub-pixel areas under crop stress. We applied the stress indices to both the 3m and 18m AVIRIS imagery for the entire production corn field using several sub-pixel areas within the field to compare the relative sensitivity of each stress index; and (3) Comparative sensitivity of stress indices to realistic measurement uncertainties. We compare the stress indices calculated with several levels of spectral uncertainty (by shifting the wavelengths) and reflectance uncertainty (by systematically varying the reflectance retrieval code initialization).

Emulating natural disturbances for declining late-successional species: a case study of the consequences for cerulean warblers (Setophaga cerulea).

PubMed

Boves, Than J; Buehler, David A; Sheehan, James; Wood, Petra Bohall; Rodewald, Amanda D; Larkin, Jeffrey L; Keyser, Patrick D; Newell, Felicity L; George, Gregory A; Bakermans, Marja H; Evans, Andrea; Beachy, Tiffany A; McDermott, Molly E; Perkins, Kelly A; White, Matthew; Wigley, T Bently

2013-01-01

Forest cover in the eastern United States has increased over the past century and while some late-successional species have benefited from this process as expected, others have experienced population declines. These declines may be in part related to contemporary reductions in small-scale forest interior disturbances such as fire, windthrow, and treefalls. To mitigate the negative impacts of disturbance alteration and suppression on some late-successional species, strategies that emulate natural disturbance regimes are often advocated, but large-scale evaluations of these practices are rare. Here, we assessed the consequences of experimental disturbance (using partial timber harvest) on a severely declining late-successional species, the cerulean warbler (Setophaga cerulea), across the core of its breeding range in the Appalachian Mountains. We measured numerical (density), physiological (body condition), and demographic (age structure and reproduction) responses to three levels of disturbance and explored the potential impacts of disturbance on source-sink dynamics. Breeding densities of warblers increased one to four years after all canopy disturbances (vs. controls) and males occupying territories on treatment plots were in better condition than those on control plots. However, these beneficial effects of disturbance did not correspond to improvements in reproduction; nest success was lower on all treatment plots than on control plots in the southern region and marginally lower on light disturbance plots in the northern region. Our data suggest that only habitats in the southern region acted as sources, and interior disturbances in this region have the potential to create ecological traps at a local scale, but sources when viewed at broader scales. Thus, cerulean warblers would likely benefit from management that strikes a landscape-level balance between emulating natural disturbances in order to attract individuals into areas where current structure is inappropriate, and limiting anthropogenic disturbance in forests that already possess appropriate structural attributes in order to maintain maximum productivity.

Emulating natural disturbances for declining late-successional species: A case study of the consequences for Cerulean Warblers (Setophaga cerulea)

USGS Publications Warehouse

Boves, Than J.; Buehler, David A.; Sheehan, James; Wood, Petra Bohall; Rodewald, Amanda D.; Larkin, Jeffrey L.; Keyser, Patrick D.; Newell, Felicity L.; George, Gregory A.; Bakermans, Marja H.; Evans, Andrea; Beachy, Tiffany A.; McDermott, Molly E.; Perkins, Kelly A.; White, Matthew; Wigley, T. Bently

2013-01-01

Forest cover in the eastern United States has increased over the past century and while some late-successional species have benefited from this process as expected, others have experienced population declines. These declines may be in part related to contemporary reductions in small-scale forest interior disturbances such as fire, windthrow, and treefalls. To mitigate the negative impacts of disturbance alteration and suppression on some late-successional species, strategies that emulate natural disturbance regimes are often advocated, but large-scale evaluations of these practices are rare. Here, we assessed the consequences of experimental disturbance (using partial timber harvest) on a severely declining late-successional species, the cerulean warbler (Setophaga cerulea), across the core of its breeding range in the Appalachian Mountains. We measured numerical (density), physiological (body condition), and demographic (age structure and reproduction) responses to three levels of disturbance and explored the potential impacts of disturbance on source-sink dynamics. Breeding densities of warblers increased one to four years after all canopy disturbances (vs. controls) and males occupying territories on treatment plots were in better condition than those on control plots. However, these beneficial effects of disturbance did not correspond to improvements in reproduction; nest success was lower on all treatment plots than on control plots in the southern region and marginally lower on light disturbance plots in the northern region. Our data suggest that only habitats in the southern region acted as sources, and interior disturbances in this region have the potential to create ecological traps at a local scale, but sources when viewed at broader scales. Thus, cerulean warblers would likely benefit from management that strikes a landscape-level balance between emulating natural disturbances in order to attract individuals into areas where current structure is inappropriate, and limiting anthropogenic disturbance in forests that already possess appropriate structural attributes in order to maintain maximum productivity.

Birds and Aircraft on Midway Islands, 1959-63 Investigations

USGS Publications Warehouse

Robbins, C.S.

1966-01-01

At Midway Naval Station, 1.100 miles west-northwest of Honolulu, military aircraft collide with flying albatrosses at the rate of about 300 to 400 per year. One aircraft out of every five that hits an albatross on takeoff either aborts (stops before it is airborne), or dumps fuel and returns for appraisal of damage. About 70,000 pairs of Laysan albatrosses and 7,000 pairs of blackfooted albatrosses nest at Midway in any given year. The population is declining. Two-thirds or more of the birds of breeding age nest each year. The minimum breeding age recorded is 5 years (each species), but many individuals do not nest until at least 7 years of age. Young birds begin to return to Midway at 3 years of age and are found more frequently as breeding age approaches. They come ashore more frequently in March and April (the high bird strike months) than in midwinter. Even in midwinter the number of 'walkers' (birds not on nests) may comprise more than 40 percent of the albatrosses present on Sand Island, Midway. Maximum longevity of the Laysan albatross is believed to exceed 40 years; 6 out of 99 birds banded as breeding adults (7+ years old) were still alive 24 years after banding. Control methods tested experimentally include disturbance, gunfire, other sounds, radar beams, smoke, odors, destruction of nests, eggs, chicks, and adults, moving of birds, eggs, and chicks, erection of obstacles to flight, and habitat management. Habitat management (leveling and hardsurfacing of shoulders of runways) has been the most effective. Albatrosses were counted over the runways at 10 locations in 1957, 1958, and 1960 to determine the effects of wind direction, wind speed, and topography on the numbers of flying birds. Birds were most concentrated in areas where rising air currents were created as winds blew against dunes or tall trees. Soaring and strike rate both increased with greater wind speeds. There was a highly significant correlation between strike frequency and wind direction. Soaring and strike rate were greatest over runway 6-24 when winds were from a northerly quadrant, and greatest over runway 15-33 when winds were east to southeast. Counts (nearly 7,000 observations) before and after the leveling of dunes along part of the south side of the principal runway, 6-24, showed a 61 percent decrease in soaring over the principal runway as compared with a 4 percent increase over runway 15-33 where no major habitat management had been done. Studies of population dynamics of Laysan and black-footed albatrosses in 4 study plots (totaling 14 1/2 acres) are yielding information on nesting density, changes in nesting population from year to year, frequency of nesting of individual birds, closeness of return, reproductive success, rate of nest loss, age at which young birds begin nesting, age composition of the population, and life expectancy of adults. Recommendations are made for reducing the bird hazard and for protecting birds that are not involved in the hazard.

Pheromone disruption of Argentine ant trail integrity.

PubMed

Suckling, D M; Peck, R W; Manning, L M; Stringer, L D; Cappadonna, J; El-Sayed, A M

2008-12-01

Disruption of Argentine ant trail following and reduced ability to forage (measured by bait location success) was achieved after presentation of an oversupply of trail pheromone, (Z)-9-hexadecenal. Experiments tested single pheromone point sources and dispersion of a formulation in small field plots. Ant walking behavior was recorded and digitized by using video tracking, before and after presentation of trail pheromone. Ants showed changes in three parameters within seconds of treatment: (1) Ants on trails normally showed a unimodal frequency distribution of walking track angles, but this pattern disappeared after presentation of the trail pheromone; (2) ants showed initial high trail integrity on a range of untreated substrates from painted walls to wooden or concrete floors, but this was significantly reduced following presentation of a point source of pheromone; (3) the number of ants in the pheromone-treated area increased over time, as recruitment apparently exceeded departures. To test trail disruption in small outdoor plots, the trail pheromone was formulated with carnuba wax-coated quartz laboratory sand (1 g quartz sand/0.2 g wax/1 mg pheromone). The pheromone formulation, with a half-life of 30 h, was applied by rotary spreader at four rates (0, 2.5, 7.5, and 25 mg pheromone/m(2)) to 1- and 4-m(2) plots in Volcanoes National Park, Hawaii. Ant counts at bait cards in treated plots were significantly reduced compared to controls on the day of treatment, and there was a significant reduction in ant foraging for 2 days. These results show that trail pheromone disruption of Argentine ants is possible, but a much more durable formulation is needed before nest-level impacts can be expected.

Sensitivity of Above-Ground Biomass Estimates to Height-Diameter Modelling in Mixed-Species West African Woodlands

PubMed Central

Aynekulu, Ermias; Pitkänen, Sari; Packalen, Petteri

2016-01-01

It has been suggested that above-ground biomass (AGB) inventories should include tree height (H), in addition to diameter (D). As H is a difficult variable to measure, H-D models are commonly used to predict H. We tested a number of approaches for H-D modelling, including additive terms which increased the complexity of the model, and observed how differences in tree-level predictions of H propagated to plot-level AGB estimations. We were especially interested in detecting whether the choice of method can lead to bias. The compared approaches listed in the order of increasing complexity were: (B0) AGB estimations from D-only; (B1) involving also H obtained from a fixed-effects H-D model; (B2) involving also species; (B3) including also between-plot variability as random effects; and (B4) involving multilevel nested random effects for grouping plots in clusters. In light of the results, the modelling approach affected the AGB estimation significantly in some cases, although differences were negligible for some of the alternatives. The most important differences were found between including H or not in the AGB estimation. We observed that AGB predictions without H information were very sensitive to the environmental stress parameter (E), which can induce a critical bias. Regarding the H-D modelling, the most relevant effect was found when species was included as an additive term. We presented a two-step methodology, which succeeded in identifying the species for which the general H-D relation was relevant to modify. Based on the results, our final choice was the single-level mixed-effects model (B3), which accounts for the species but also for the plot random effects reflecting site-specific factors such as soil properties and degree of disturbance. PMID:27367857

Highly variable aerodynamic roughness length (z0) for a hummocky debris-covered glacier

NASA Astrophysics Data System (ADS)

Miles, Evan S.; Steiner, Jakob F.; Brun, Fanny

2017-08-01

The aerodynamic roughness length (z0) is an essential parameter in surface energy balance studies, but few literature values exist for debris-covered glaciers. We use microtopographic and aerodynamic methods to assess the spatial variability of z0 for Lirung Glacier, Nepal. We apply structure from motion to produce digital elevation models for three nested domains: five 1 m2 plots, a 21,300 m2 surface depression, and the lower 550,000 m2 of the debris-mantled tongue. Wind and temperature sensor towers were installed in the vicinity of the plots within the surface depression in October 2014. We calculate z0 according to a variety of transect-based microtopographic parameterizations for each plot, then develop a grid version of the algorithms by aggregating data from all transects. This grid approach is applied to the surface depression digital elevation model to characterize z0 spatial variability. The algorithms reproduce the same variability among transects and plots, but z0 estimates vary by an order of magnitude between algorithms. Across the study depression, results from different algorithms are strongly correlated. Using Monin-Obukov similarity theory, we derive z0 values from the meteorological data. Using different stability criteria, we derive median values of z0 between 0.03 m and 0.05 m, but with considerable uncertainty due to the glacier's complex topography. Considering estimates from these algorithms, results suggest that z0 varies across Lirung Glacier between ˜0.005 m (gravels) to ˜0.5 m (boulders). Future efforts should assess the importance of such variable z0 values in a distributed energy balance model.

Pheromone disruption of Argentine ant trail integrity

USGS Publications Warehouse

Suckling, D.M.; Peck, R.W.; Manning, L.M.; Stringer, L.D.; Cappadonna, J.; El-Sayed, A. M.

2008-01-01

Disruption of Argentine ant trail following and reduced ability to forage (measured by bait location success) was achieved after presentation of an oversupply of trail pheromone, (Z)-9-hexadecenal. Experiments tested single pheromone point sources and dispersion of a formulation in small field plots. Ant walking behavior was recorded and digitized by using video tracking, before and after presentation of trail pheromone. Ants showed changes in three parameters within seconds of treatment: (1) Ants on trails normally showed a unimodal frequency distribution of walking track angles, but this pattern disappeared after presentation of the trail pheromone; (2) ants showed initial high trail integrity on a range of untreated substrates from painted walls to wooden or concrete floors, but this was significantly reduced following presentation of a point source of pheromone; (3) the number of ants in the pheromone-treated area increased over time, as recruitment apparently exceeded departures. To test trail disruption in small outdoor plots, the trail pheromone was formulated with carnuba wax-coated quartz laboratory sand (1 g quartz sand/0.2 g wax/1 mg pheromone). The pheromone formulation, with a half-life of 30 h, was applied by rotary spreader at four rates (0, 2.5, 7.5, and 25 mg pheromone/m2) to 1- and 4-m2 plots in Volcanoes National Park, Hawaii. Ant counts at bait cards in treated plots were significantly reduced compared to controls on the day of treatment, and there was a significant reduction in ant foraging for 2 days. These results show that trail pheromone disruption of Argentine ants is possible, but a much more durable formulation is needed before nest-level impacts can be expected. ?? 2008 Springer Science+Business Media, LLC.

Field suppression of the invasive ant Wasmannia auropunctata (Hymenoptera: Formicidae) in a tropical fruit orchard in Hawaii.

PubMed

Souza, Evann; Follett, Peter A; Price, Don K; Stacy, Elizabeth A

2008-08-01

The little fire ant, Wasmannia auropunctata (Roger) (Hymenoptera: Formicidae), is an invasive ant that forms supercolonies when it successfully invades new areas. W. auropunctata was first reported in Hawaii in 1999, and it has since invaded a variety of agricultural sites, including nurseries, orchards, and pastures. Amdro (hydramethylnon; in bait stations), Esteem (pyriproxyfen; broadcast bait), and Conserve (spinosad; ground spray) were tested for their efficacy against W. auropunctata in a rambutan, Nephelium lappaceum L. and mangosteen, Garcinia mangostana L., orchard by making treatments every 2 wk for 16 wk. Relative estimates of ant numbers in plots was determined by transect sampling using peanut butter-baited sticks. Significant treatment effects were observed on weeks 13-17, with reductions in ant counts occurring in the Amdro and Esteem treatments. During this period, the reduction in ant numbers from pretreatment counts averaged 47.1 and 92.5% in the Amdro and Esteem plots, respectively, whereas ant numbers in the untreated control plots increased by 185.9% compared with pretreatment counts. Conserve did not cause a reduction in ant counts as applied in our experiment. No plots for any of the treatments achieved 100% reduction. Pseudococcidae were counted on branch terminals at 4-wk intervals. The two predominant species, Nipaecoccus nipae (Maskell) and Nipaecoccus viridis (Newstead) were significantly lower in the Amdro and Esteem treatments on week 16 compared with controls. Many W. auropunctata were found nesting in protected sites in the orchard trees, which may have compromised the ground-based control methods. Absolute density estimates from shallow core samples taken from the orchard floor indicated the W. auropunctata supercolony exceeded 244 million ants and 22.7 kg wet weight per ha.

Water, Carbon, and Nutrient Cycling Following Insect-induced Tree Mortality: How Well Do Plot-scale Observations Predict Ecosystem-Scale Response?

NASA Astrophysics Data System (ADS)

Brooks, P. D.; Barnard, H. R.; Biederman, J. A.; Borkhuu, B.; Edburg, S. L.; Ewers, B. E.; Gochis, D. J.; Gutmann, E. D.; Harpold, A. A.; Hicke, J. A.; Pendall, E.; Reed, D. E.; Somor, A. J.; Troch, P. A.

2011-12-01

Widespread tree mortality caused by insect infestations and drought has impacted millions of hectares across western North America in recent years. Although previous work on post-disturbance responses (e.g. experimental manipulations, fire, and logging) provides insight into how water and biogeochemical cycles may respond to insect infestations and drought, we find that the unique nature of these drivers of tree mortality complicates extrapolation to larger scales. Building from previous work on forest disturbance, we present a conceptual model of how temporal changes in forest structure impact the individual components of energy balance, hydrologic partitioning, and biogeochemical cycling and the interactions among them. We evaluate and refine this model using integrated observations and process modeling on multiple scales including plot, stand, flux tower footprint, hillslope, and catchment to identify scaling relationships and emergent patterns in hydrological and biogeochemical responses. Our initial results suggest that changes in forest structure at point or plot scales largely have predictable effects on energy, water, and biogeochemical cycles that are well captured by land surface, hydrological, and biogeochemical models. However, observations from flux towers and nested catchments suggest that both the hydrological and biogeochemical effects observed at tree and plot scales may be attenuated or exacerbated at larger scales. Compensatory processes are associated with attenuation (e.g. as transpiration decreases, evaporation and sublimation increase), whereas both attenuation and exacerbation may result from nonlinear scaling behavior across transitions in topography and ecosystem structure that affect the redistribution of energy, water, and solutes. Consequently, the effects of widespread tree mortality on ecosystem services of water supply and carbon sequestration will likely depend on how spatial patterns in mortality severity across the landscape affect large-scale hydrological partitioning.

Estimating the Relative Water Content of Leaves in a Cotton Canopy

NASA Technical Reports Server (NTRS)

Vanderbilt, Vern; Daughtry, Craig; Kupinski, Meredith; French, Andrew; Chipman, Russell; Dahlgren, Robert

2017-01-01

Remotely sensing plant canopy water status remains a long-term goal of remote sensing research. Established approaches to estimating canopy water status the Crop Water Stress Index, the Water Deficit Index and the Equivalent Water Thickness involve measurements in the thermal or reflective infrared. Here we report plant water status estimates based upon analysis of polarized visible imagery of a cotton canopy measured by ground Multi-Spectral Polarization Imager (MSPI). Such estimators potentially provide access to the plant hydrological photochemistry that manifests scattering and absorption effects in the visible spectral region.Twice during one day, +- 3 hours from solar noon, we collected polarized imagery and relative water content data on a cotton test plot located at the Arid Land Agricultural Research Center, United States Department of Agriculture, Maricopa, AZ. The test plot, a small portion of a large cotton field, contained stressed plants ready for irrigation. The evening prior to data collection we irrigated several rows of plants within the test plot. Thus, ground MSPI imagery from both morning and afternoon included cotton plants with a range of water statuses. Data analysis includes classifying the polarized imagery into sunlit reflecting, sunlit transmitting, shaded foliage and bare soil. We estimate the leaf surface reflection and interior reflection based upon the per pixel polarization and sunview directions. We compare our cotton results with our prior polarization results for corn and soybean leaves measured in the lab and corn leaves measured in the field.

Diurnal and Seasonal Cold Lands Signatures in SSM/I-scale Microwave Radiometry of the North Slope of Alaska

NASA Technical Reports Server (NTRS)

Kim, Edward J.; England, Anthony W.; Hildebrand, Peter H. (Technical Monitor)

2001-01-01

In this paper, we explore scaling and data assimilation-related issues associated with utilizing passive microwave satellite observations of Cold Lands-in this case, the climatologically and ecologically sensitive arctic tundra. Our approach expands on our earlier work using a one-year dataset from the Radiobrightness Energy Balance Experiment-3 (REBEX-3). REBEX-3 featured a tower-based SSM/I (Special Sensor Microwave/Imager) simulator deployed on the North Slope of Alaska in 1994-95. Two findings are significant here. First, a comparison of tower and satellite signatures at 19 and 37 GHz strongly suggested that the North Slope is radiometrically homogeneous for spatial scales up to SSM/I footprints (approximately 25 km), an unusual and valuable characteristic for monitoring and retrieving land surface conditions. And second, at the plot scale, signatures of snow/no-snow and freeze/thaw transitions were identifiable for tussock tundra land cover, so that even snow-free frozen tundra could be unambiguously distinguished from tundra covered with dry snow, another unusual and valuable characteristic. We present results from analyzing satellite brightness signatures of selected North Slope pixels corresponding to instrumented sites along a transect from the Brooks Range to the Arctic Ocean. A custom EASE (Equal Area Scalable Earth)-Grid processor was used to extract SSMJI data for every orbit with observations of this region during the 1994-95 year. The resulting high temporal-resolution (4-8 points/day), gridded data were then analyzed for evidence of the same diurnal and seasonal signatures seen at the plot scale (through micrometeorological and/or brightness data). Differences between satellite and tower brightness observations are quantified for various conditions at the REBEX-3 site. Such differences from the less-frequent and/or larger-scale satellite observations represent a form of input 'noise' in data assimilation applications. For the other sites, the performance of snow/no-snow and freeze/thaw discriminators vs. ground truth represents an opportunity to gauge the homogeneity of other pixels.

Hyperspectral classification of grassland species: towards a UAS application for semi-automatic field surveys

NASA Astrophysics Data System (ADS)

Lopatin, Javier; Fassnacht, Fabian E.; Kattenborn, Teja; Schmidtlein, Sebastian

2017-04-01

Grasslands are one of the ecosystems that have been strongly intervened during the past decades due to anthropogenic impacts, affecting their structural and functional composition. To monitor the spatial and/or temporal changes of these environments, a reliable field survey is first needed. As quality relevés are usually expensive and time consuming, the amount of information available is usually poor or not well spatially distributed at the regional scale. In the present study, we investigate the possibility of a semi-automated method used for repeated surveys of monitoring sites. We analyze the applicability of very high spatial resolution hyperspectral data to classify grassland species at the level of individuals. The AISA+ imaging spectrometer mounted on a scaffold was applied to scan 1 m2 grassland plots and assess the impact of four sources of variation on the predicted species cover: (1) the spatial resolution of the scans, (2) the species number and structural diversity, (3) the species cover, and (4) the species functional types (bryophytes, forbs and graminoids). We found that the spatial resolution and the diversity level (mainly structural diversity) were the most important source of variation for the proposed approach. A spatial resolution below 1 cm produced relatively high model performances, while predictions with pixel sizes over that threshold produced non adequate results. Areas with low interspecies overlap reached classification median values of 0.8 (kappa). On the contrary, results were not satisfactory in plots with frequent interspecies overlap in multiple layers. By means of a bootstrapping procedure, we found that areas with shadows and mixed pixels introduce uncertainties into the classification. We conclude that the application of very high resolution hyperspectral remote sensing as a robust alternative or supplement to field surveys is possible for environments with low structural heterogeneity. This study presents the first try of a full classification of grassland species at the individuum level using spectral data.

Monitoring forest carbon in a Tanzanian woodland using interferometric SAR: a novel methodology for REDD.

PubMed

Solberg, Svein; Gizachew, Belachew; Næsset, Erik; Gobakken, Terje; Bollandsås, Ole Martin; Mauya, Ernest William; Olsson, Håkan; Malimbwi, Rogers; Zahabu, Eliakimu

2015-12-01

REDD+ implementation requires establishment of a system for measuring, reporting and verification (MRV) of forest carbon changes. A challenge for MRV is the lack of satellite based methods that can track not only deforestation, but also degradation and forest growth, as well as a lack of historical data that can serve as a basis for a reference emission level. Working in a miombo woodland in Tanzania, we here aim at demonstrating a novel 3D satellite approach based on interferometric processing of radar imagery (InSAR). Forest carbon changes are derived from changes in the forest canopy height obtained from InSAR, i.e. decreases represent carbon loss from logging and increases represent carbon sequestration through forest growth. We fitted a model of above-ground biomass (AGB) against InSAR height, and used this to convert height changes to biomass and carbon changes. The relationship between AGB and InSAR height was weak, as the individual plots were widely scattered around the model fit. However, we consider the approach to be unique and feasible for large-scale MRV efforts in REDD+ because the low accuracy was attributable partly to small plots and other limitations in the data set, and partly to a random pixel-to-pixel variation in trunk forms. Further processing of the InSAR data provides data on the categories of forest change. The combination of InSAR data from the Shuttle RADAR Topography Mission (SRTM) and the TanDEM-X satellite mission provided both historic baseline of change for the period 2000-2011, as well as annual change 2011-2012. A 3D data set from InSAR is a promising tool for MRV in REDD+. The temporal changes seen by InSAR data corresponded well with, but largely supplemented, the changes derived from Landsat data.

Plot shape effects on plant species diversity measurements

USGS Publications Warehouse

Keeley, Jon E.; Fotheringham, C.J.

2005-01-01

Abstract. Question: Do rectangular sample plots record more plant species than square plots as suggested by both empirical and theoretical studies?Location: Grasslands, shrublands and forests in the Mediterranean-climate region of California, USA.Methods: We compared three 0.1-ha sampling designs that differed in the shape and dispersion of 1-m2 and 100-m2 nested subplots. We duplicated an earlier study that compared the Whittaker sample design, which had square clustered subplots, with the modified Whittaker design, which had dispersed rectangular subplots. To sort out effects of dispersion from shape we used a third design that overlaid square subplots on the modified Whittaker design. Also, using data from published studies we extracted species richness values for 400-m2 subplots that were either square or 1:4 rectangles partially overlaid on each other from desert scrub in high and low rainfall years, chaparral, sage scrub, oak savanna and coniferous forests with and without fire.Results: We found that earlier empirical reports of more than 30% greater richness with rectangles were due to the confusion of shape effects with spatial effects, coupled with the use of cumulative number of species as the metric for comparison. Average species richness was not significantly different between square and 1:4 rectangular sample plots at either 1- or 100-m2. Pairwise comparisons showed no significant difference between square and rectangular samples in all but one vegetation type, and that one exhibited significantly greater richness with squares. Our three intensive study sites appear to exhibit some level of self-similarity at the scale of 400 m2, but, contrary to theoretical expectations, we could not detect plot shape effects on species richness at this scale.Conclusions: At the 0.1-ha scale or lower there is no evidence that plot shape has predictable effects on number of species recorded from sample plots. We hypothesize that for the mediterranean-climate vegetation types studied here, the primary reason that 1:4 rectangles do not sample greater species richness than squares is because species turnover varies along complex environmental gradients that are both parallel and perpendicular to the long axis of rectangular plots. Reports in the literature of much greater species richness recorded for highly elongated rectangular strips than for squares of the same area are not likely to be fair comparisons because of the dramatically different periphery/area ratio, which includes a much greater proportion of species that are using both above and below-ground niche space outside the sample area.

Characterization of the genome of a novel ilarvirus naturally infecting Cape gooseberry (Physalis peruviana).

PubMed

Gallo-García, Yuliana M; Jaramillo-Mesa, Helena; Toro-Fernández, Luisa F; Marín-Montoya, Mauricio; Gutiérrez, Pablo A

2018-06-01

As part of an initiative to characterize viruses infecting Cape gooseberry in the province of Antioquia (Colombia), we report the genome sequence of a new member of the genus Ilarvirus (family Bromoviridae). This virus was identified in a Cape gooseberry plot in the municipality of Marinilla in a mixed infection with potato virus Y (PVY) as part of high-throughput sequencing initiative. Results were confirmed by nested RT-PCR and DAS-ELISA. Phylogenetic analysis suggested that the Cape gooseberry ilarvirus is a new member of subgroup 1 and it is most closely related to ageratum latent virus (AgLV). The name "Cape gooseberry ilarvirus 1" (CGIV-1) is proposed for this new ilarvirus.

Transition of vegetation states positively affects harvester ants in the Great Basin, United States

USGS Publications Warehouse

Holbrook, Joseph D.; Pilliod, David S.; Arkle, Robert; Rachlow, Janet L.; Vierling, Kerri T.; Wiest, Michelle M.

2016-01-01

Invasions by non-native plants can alter ecosystems such that new ecological states are reached, but less is known about how these transitions influence animal populations. Sagebrush (Artemisia tridentata) ecosystems are experiencing state changes because of fire and invasion by exotic annual grasses. Our goal was to study the effects of these state changes on the Owyhee and western harvester ants (Pogonomyrmex salinusOlsen and P. occidentalis Cresson, respectively). We sampled 358 1-ha plots across the northern Great Basin, which captured unburned and burned conditions across 1 −≥31 years postfire. Our results indicated an immediate and consistent change in vegetation states from shrubland to grassland between 1 and 31 years postfire. Harvester ant occupancy was unrelated to time since fire, whereas we observed a positive effect of fire on nest density. Similarly, we discovered that fire and invasion by exotic annuals were weak predictors of harvester ant occupancy but strong predictors of nest density. Occupancy of harvester ants was more likely in areas with finer-textured soils, low precipitation, abundant native forbs, and low shrub cover. Nest density was higher in arid locations that recently burned and exhibited abundant exotic annual and perennial (exotic and native) grasses. Finally, we discovered that burned areas that received postfire restoration had minimal influence on harvester ant occupancy or nest density compared with burned and untreated areas. These results suggest that fire-induced state changes from native shrublands to grasslands dominated by non-native grasses have a positive effect on density of harvester ants (but not occupancy), and that postfire restoration does not appear to positively or negatively affect harvester ants. Although wildfire and invasion by exotic annual grasses may negatively affect other species, harvester ants may indeed be one of the few winners among a myriad of losers linked to vegetation state changes within sagebrush ecosystems.

The utility of estimating net primary productivity over Alaska using baseline AVHRR data

USGS Publications Warehouse

Markon, C.J.; Peterson, Kim M.

2002-01-01

Net primary productivity (NPP) is a fundamental ecological variable that provides information about the health and status of vegetation communities. The Normalized Difference Vegetation Index, or NDVI, derived from the Advanced Very High Resolution Radiometer (AVHRR) is increasingly being used to model or predict NPP, especially over large remote areas. In this article, seven seasonally based metrics calculated from a seven-year baseline NDVI dataset were used to model NPP over Alaska, USA. For each growing season, they included maximum, mean and summed NDVI, total days, product of total days and maximum NDVI, an integral estimate of NDVI and a summed product of NDVI and solar radiation. Field (plot) derived NPP estimates were assigned to 18 land cover classes from an Alaskan statewide land cover database. Linear relationships between NPP and each NDVI metric were analysed at four scales: plot, 1-km, 10-km and 20-km pixels. Results show moderate to poor relationship between any of the metrics and NPP estimates for all data sets and scales. Use of NDVI for estimating NPP may be possible, but caution is required due to data seasonality, the scaling process used and land surface heterogeneity.

Multi-scale variation in spatial heterogeneity for microbial community structure in an eastern Virginia agricultural field

NASA Technical Reports Server (NTRS)

Franklin, Rima B.; Mills, Aaron L.

2003-01-01

To better understand the distribution of soil microbial communities at multiple spatial scales, a survey was conducted to examine the spatial organization of community structure in a wheat field in eastern Virginia (USA). Nearly 200 soil samples were collected at a variety of separation distances ranging from 2.5 cm to 11 m. Whole-community DNA was extracted from each sample, and community structure was compared using amplified fragment length polymorphism (AFLP) DNA fingerprinting. Relative similarity was calculated between each pair of samples and compared using geostatistical variogram analysis to study autocorrelation as a function of separation distance. Spatial autocorrelation was found at scales ranging from 30 cm to more than 6 m, depending on the sampling extent considered. In some locations, up to four different correlation length scales were detected. The presence of nested scales of variability suggests that the environmental factors regulating the development of the communities in this soil may operate at different scales. Kriging was used to generate maps of the spatial organization of communities across the plot, and the results demonstrated that bacterial distributions can be highly structured, even within a habitat that appears relatively homogeneous at the plot and field scale. Different subsets of the microbial community were distributed differently across the plot, and this is thought to be due to the variable response of individual populations to spatial heterogeneity associated with soil properties. c2003 Federation of European Microbiological Societies. Published by Elsevier Science B.V. All rights reserved.

Enhancement of the superconducting gap by nesting in CaKFe 4 As 4 : A new high temperature superconductor

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mou, Daixiang; Kong, Tai; Meier, William R.

We use high resolution angle resolved photoemission spectroscopy and density functional theory with measured crystal structure parameters to study the electronic properties of CaKFe 4As 4. In contrast to the related CaFe 2As 2 compounds, CaKFe 4As 4 has a high T c of 35 K at stochiometric composition. This presents a unique opportunity to study the properties of high temperature superconductivity in the iron arsenides in the absence of doping or substitution. The Fermi surface consists of several hole and electron pockets that have a range of diameters. We find that the values of the superconducting gap are nearlymore » isotropic (within the explored portions of the Brillouin zone), but are significantly different for each of the Fermi surface (FS) sheets. Most importantly, we find that the momentum dependence of the gap magnitude plotted across the entire Brillouin zone displays a strong deviation from the simple cos( k x)cos( k y) functional form of the gap function, proposed by the scenario of Cooper pairing driven by a short range antiferromagnetic exchange interaction. Instead, the maximum value of the gap is observed on FS sheets that are closest to the ideal nesting condition, in contrast to previous observations in other ferropnictides. Finally, these results provide strong support for the multiband character of superconductivity in CaKFe 4As 4, in which Cooper pairing forms on the electron and the hole bands interacting via a dominant interband repulsive interaction, enhanced by band nesting.« less

Enhancement of the superconducting gap by nesting in CaKFe 4 As 4 : A new high temperature superconductor

DOE PAGES

Mou, Daixiang; Kong, Tai; Meier, William R.; ...

2016-12-28

We use high resolution angle resolved photoemission spectroscopy and density functional theory with measured crystal structure parameters to study the electronic properties of CaKFe 4As 4. In contrast to the related CaFe 2As 2 compounds, CaKFe 4As 4 has a high T c of 35 K at stochiometric composition. This presents a unique opportunity to study the properties of high temperature superconductivity in the iron arsenides in the absence of doping or substitution. The Fermi surface consists of several hole and electron pockets that have a range of diameters. We find that the values of the superconducting gap are nearlymore » isotropic (within the explored portions of the Brillouin zone), but are significantly different for each of the Fermi surface (FS) sheets. Most importantly, we find that the momentum dependence of the gap magnitude plotted across the entire Brillouin zone displays a strong deviation from the simple cos( k x)cos( k y) functional form of the gap function, proposed by the scenario of Cooper pairing driven by a short range antiferromagnetic exchange interaction. Instead, the maximum value of the gap is observed on FS sheets that are closest to the ideal nesting condition, in contrast to previous observations in other ferropnictides. Finally, these results provide strong support for the multiband character of superconductivity in CaKFe 4As 4, in which Cooper pairing forms on the electron and the hole bands interacting via a dominant interband repulsive interaction, enhanced by band nesting.« less

The Role of Resource Density on Energy Allocation in the Neotropical Termite Nasutitermes aff. coxipoensis (Termitidae: Nasutitermitinae).

PubMed

Cristaldo, P F; Almeida, C S; Cruz, N G; Ribeiro, E J M; Rocha, M L C; Santos, A A; Santana, A S; Araújo, A P A

2018-06-01

Organisms acquire energy from environment and must allocate it among different life traits (growth, maintenance and reproduction). Social insects must manage the energy allocation to various levels such as colony growth and caste functions. Here, we addressed the question of whether resource density affects the energy allocation to the number of individuals and caste functions as well as nest's growth rate in the Neotropical termite Nasutitermes aff. coxipoensis (Homgren) (Termitidae: Nasutitermitinae). In a manipulative field experiment, colonies of N. aff. coxipoensis, with known volume, were maintained in plots with three different resource's density (0.32, 0.64 and 1.92 baits/m 2 ) over 3 months. After this period, the number of individuals as well as the caste identity and nest volume were measured. Surprisingly, our results showed that colonies reared in the extremes of resource's density (0.32 and 1.92 baits/m 2 ) produced a higher number of individuals compared with colonies reared with intermediate resource density (0. 64 baits/m 2 ). The mean number of workers increased linearly with resource density; however, the average number of immature was higher in colonies reared with 0.32 baits/m 2 compared with colonies reared with 0.64 and 1.92 baits/m 2 . No significant differences of resource density were observed in the mean number of soldiers, worker/soldier ratio as well as in the nest's growth rate. In conclusion, the resource's density seems to play an important role in determining the investment of energy in the number of individuals and caste in N. aff. coxipoensis colonies.

Inventory of montane-nesting birds in Katmai and Lake Clark national parks and preserves

USGS Publications Warehouse

Ruthrauff, Daniel R.; Tibbitts, Lee; Gill, Robert E.; Handel, Colleen M.

2007-01-01

As part of the National Park Service’s Inventory and Monitoring Program, biologists from the U. S. Geological Survey’s Alaska Science Center conducted an inventory of birds in montane regions of Katmai and Lake Clark National Parks and Preserves during 2004–2006. We used a stratified random survey design to allocate samples by ecological subsection. To survey for birds, we conducted counts at 468 points across 29, 10-km x 10-km (6.2-mi x 6.2-mi) sample plots in Katmai and 417 points across 25, 10-km x 10-km sample plots in Lake Clark. We detected 92 and 104 species in Katmai and Lake Clark, respectively, including 40 species of conservation concern. We detected three species not previously recorded in Katmai (Ring-necked Duck [Aythya collaris], Lesser Scaup [Aythya affinis], and White-tailed Ptarmigan [Lagopus leucurus]) and two species not previously recorded in Lake Clark (Northern Flicker [Colaptes auratus ] and Olive-sided Flycatcher [Contopus cooperi]). The most commonly detected species in both parks was Golden-crowned Sparrow (Zonotrichia atricapilla); Fox Sparrow (Passerella iliaca) and American Pipit (Anthus rubescens) were abundant and widely-distributed as well. We defined sites as low (100–350 m), middle (351–600 m), or high (601–1,620 m) elevation based on the distribution of vegetation cover, and similarly categorized the 34 most-commonly detected species based on the mean elevation of sample points at which they were detected. High elevation (i.e., alpine) sites were characterized by high percent cover of dwarf shrub and bare ground habitat and supported species like Rock Ptarmigan (L. mutus), American Golden-Plover (Pluvialis dominica), Wandering Tattler (Tringa incana), Surfbird (Aphriza virgata), and Snow Bunting (Plectrophenax nivalis), all species of conservation concern. This inventory represents the first systematic survey of birds nesting in montane regions of both parks. Results from this inventory can form the foundation of subsequent monitoring efforts

Bumping into the Butterfly, When I Was But a Bud

NASA Astrophysics Data System (ADS)

Hofstadter, Douglas

I will recount the main events that led me to discover the so-called ''Hofstadter butterfly'' when I was a physics student, over 40 years ago. A key moment in the tale was when, after years of futile struggle, I finally abandoned particle physics, and chose, with much trepidation, to try solid-state physics instead, a field of which I knew nothing at all. I was instinctively drawn to a long-standing classic unsolved problem in the field - What is the nature of the energy spectrum of Bloch electrons in a magnetic field? - when Professor Gregory Wannier told me that it involved a weird distinction between ''rational'' and ''irrational'' magnetic fields, which neither he nor anyone else understood. This mystery allured me, as I was sure that the rational/irrational distinction cannot possibly play a role in physical phenomena. I tried manipulating equations for a long time but was unable to make any headway, and so, as a last resort, I wound up using brute-force calculation instead. I programmed a small desktop computer to give me numbers that I then plotted by hand on paper, and one fine day, to my shock, my eyes suddenly recognized a remarkable type of pattern that I had discovered twelve years earlier, when I was an undergraduate math major exploring number theory. All at once, I realized that the theoretical energy spectrum I'd plotted by hand consisted of infinitely many copies of itself, nested infinitely deeply, and it looked a little like a butterfly, whence its name. This unanticipated discovery eventually led to many new insights into the behavior of quantum systems featuring two competing periodicities. I will briefly describe some of the consequences I found back then of the infinitely nested spectrum, and in particular how the baffling rational/irrational distinction melted away, once the butterfly's nature had been deeply understood.

Can tree species diversity be assessed with Landsat data in a temperate forest?

PubMed

Arekhi, Maliheh; Yılmaz, Osman Yalçın; Yılmaz, Hatice; Akyüz, Yaşar Feyza

2017-10-28

The diversity of forest trees as an indicator of ecosystem health can be assessed using the spectral characteristics of plant communities through remote sensing data. The objectives of this study were to investigate alpha and beta tree diversity using Landsat data for six dates in the Gönen dam watershed of Turkey. We used richness and the Shannon and Simpson diversity indices to calculate tree alpha diversity. We also represented the relationship between beta diversity and remotely sensed data using species composition similarity and spectral distance similarity of sampling plots via quantile regression. A total of 99 sampling units, each 20 m × 20 m, were selected using geographically stratified random sampling method. Within each plot, the tree species were identified, and all of the trees with a diameter at breast height (dbh) larger than 7 cm were measured. Presence/absence and abundance data (tree species number and tree species basal area) of tree species were used to determine the relationship between richness and the Shannon and Simpson diversity indices, which were computed with ground field data, and spectral variables derived (2 × 2 pixels and 3 × 3 pixels) from Landsat 8 OLI data. The Shannon-Weiner index had the highest correlation. For all six dates, NDVI (normalized difference vegetation index) was the spectral variable most strongly correlated with the Shannon index and the tree diversity variables. The Ratio of green to red (VI) was the spectral variable least correlated with the tree diversity variables and the Shannon basal area. In both beta diversity curves, the slope of the OLS regression was low, while in the upper quantile, it was approximately twice the lower quantiles. The Jaccard index is closed to one with little difference in both two beta diversity approaches. This result is due to increasing the similarity between the sampling plots when they are located close to each other. The intercept differences between two investigated beta diversity were strongly related to the development stage of a number of sampling plots in the tree species basal area method. To obtain beta diversity, the tree basal area method indicates better result than the tree species number method at representing similarity of regions which are located close together. In conclusion, NDVI is helpful for estimating the alpha diversity of trees over large areas when the vegetation is at the maximum growing season. Beta diversity could be obtained with the spectral heterogeneity of Landsat data. Future tree diversity studies using remote sensing data should select data sets when vegetation is at the maximum growing season. Also, forest tree diversity investigations can be identified by using higher-resolution remote sensing data such as ESA Sentinel 2 data which is freely available since June 2015.

Timing considerations for preclinical MRgRT: effects of ion diffusion, SNR and imaging times on FXG gel calibration

NASA Astrophysics Data System (ADS)

Welch, M.; Foltz, W. D.; Jaffray, D. A.

2015-01-01

Sub-millimeter resolution images are required for gel dosimeters to be used in preclinical research, which is challenging for MR probed ferrous xylenol-orange (FXG) dosimeters due to ion diffusion and inadequate SNR. A preclinical 7 T MR, small animal irradiator and FXG dosimeters were used in all experiments. Ion diffusion was analyzed using high resolution (0.2 mm/pixel) T1 MR images collected every 5 minutes, post-irradiation, for an hour. Using Fick's second law, ion diffusion was approximated for the first hour post-irradiation. SNR, T1 map precision and calibration fit were determined for two MR protocols: (1) 10 minute acquisition, 0.35mm/pixel and 3mm slices, (2) 45 minute acquisition, 0. 25 mm/pixel and 2 mm slices. SNR and T1 map precision were calculated using a Monte Carlo simulation. Calibration curves were determined by plotting R1 relaxation rates versus depth dose data, and fitting a linear trend line. Ion diffusion was estimated as 0.003mm2 in the first hour post-irradiation. For protocols (1) and (2) respectively, Monte Carlo simulation predicted T1 precisions of 3% and 5% within individual voxels using experimental SNRs; the corresponding measured T1 precisions were 8% and 12%. The linear trend lines reported slopes of 27 ± 3 Gy*s (R2: 0.80 ± 0.04) and 27 ± 4 Gy*s (R2: 0.90 ± 0.04). Ion diffusion is negligible within the first hour post-irradiation, and an accurate and reproducible calibration can be achieved in a preclinical setting with sub-millimeter resolution.

Predicting occupancy for pygmy rabbits in Wyoming: an independent evaluation of two species distribution models

USGS Publications Warehouse

Germaine, Stephen S.; Ignizio, Drew; Keinath, Doug; Copeland, Holly

2014-01-01

Species distribution models are an important component of natural-resource conservation planning efforts. Independent, external evaluation of their accuracy is important before they are used in management contexts. We evaluated the classification accuracy of two species distribution models designed to predict the distribution of pygmy rabbit Brachylagus idahoensis habitat in southwestern Wyoming, USA. The Nature Conservancy model was deductive and based on published information and expert opinion, whereas the Wyoming Natural Diversity Database model was statistically derived using historical observation data. We randomly selected 187 evaluation survey points throughout southwestern Wyoming in areas predicted to be habitat and areas predicted to be nonhabitat for each model. The Nature Conservancy model correctly classified 39 of 77 (50.6%) unoccupied evaluation plots and 65 of 88 (73.9%) occupied plots for an overall classification success of 63.3%. The Wyoming Natural Diversity Database model correctly classified 53 of 95 (55.8%) unoccupied plots and 59 of 88 (67.0%) occupied plots for an overall classification success of 61.2%. Based on 95% asymptotic confidence intervals, classification success of the two models did not differ. The models jointly classified 10.8% of the area as habitat and 47.4% of the area as nonhabitat, but were discordant in classifying the remaining 41.9% of the area. To evaluate how anthropogenic development affected model predictive success, we surveyed 120 additional plots among three density levels of gas-field road networks. Classification success declined sharply for both models as road-density level increased beyond 5 km of roads per km-squared area. Both models were more effective at predicting habitat than nonhabitat in relatively undeveloped areas, and neither was effective at accounting for the effects of gas-energy-development road networks. Resource managers who wish to know the amount of pygmy rabbit habitat present in an area or wanting to direct gas-drilling efforts away from pygmy rabbit habitat may want to consider both models in an ensemble manner, where more confidence is placed in mapped areas (i.e., pixels) for which both models agree than for areas where there is model disagreement.

Species-area curves indicate the importance of habitats' contributions to regional biodiversity

USGS Publications Warehouse

Chong, G.W.; Stohlgren, T.J.

2007-01-01

We examined species-area curves, species composition and similarity (Jaccard's coefficients), and species richness in 17 vegetation types to develop a composite index of a vegetation type's contribution to regional species richness. We collected data from 1 to 1000 m2 scales in 147 nested plots in Rocky Mountain National Park, Colorado, USA to compare three species-area curve models' abilities to estimate the number of species observed in each vegetation type. The log(species)-log(area) curve had the largest adjusted coefficients of determination (r2 values) in 12 of the 17 types, followed by the species-log(area) curve with five of the highest values. When the slopes of the curves were corrected for species overlap among plots with Jaccard's coefficients, the species-log(area) curves estimated values closest to those observed. We combined information from species-area curves and measures of heterogeneity with information on the area covered by each vegetation type and found that the types making the greatest contributions to regional biodiversity covered the smallest areas. This approach may provide an accurate and relatively rapid way to rank hotspots of plant diversity within regions of interest.

Physical activity in climacteric women: comparison between self-reporting and pedometer.

PubMed

Colpani, Verônica; Spritzer, Poli Mara; Lodi, Ana Paula; Dorigo, Guilherme Gustavo; Miranda, Isabela Albuquerque Severo de; Hahn, Laiza Beck; Palludo, Luana Pedroso; Pietroski, Rafaela Lazzari; Oppermann, Karen

2014-04-01

To compare two methods of assessing physical activity in pre-, peri- and postmenopausal women. Cross-sectional study nested in a cohort of pre-, peri- and postmenopausal women in a city in Southern Brazil. The participants completed a questionnaire that included sociodemographic and clinical data. Physical activity was assessed using a digital pedometer and the International Physical Activity Questionnaire, short version. The participants were classified into strata of physical activity according to the instrument used. For statistical analysis, the Spearman correlation test, Kappa index, concordance coefficient and Bland-Altman plots were used. The concordance (k = 0110; p = 0.007) and the correlation (rho = 0.136, p = 0.02) between the International Physical Activity Questionnaire, short version, and pedometer were weak. In Bland-Altman plots, it was observed that differences deviate from zero value whether the physical activity is minimal or more intense. Comparing the two methods, the frequency of inactive women is higher when assessed by pedometer than by the International Physical Activity Questionnaire--short version, and the opposite occurs in active women. Agreement between the methods was weak. Although easy to use, Physical Activity Questionnaire--short version overestimates physical activity compared with assessment by pedometer.

Multi-pass encoding of hyperspectral imagery with spectral quality control

NASA Astrophysics Data System (ADS)

Wasson, Steven; Walker, William

2015-05-01

Multi-pass encoding is a technique employed in the field of video compression that maximizes the quality of an encoded video sequence within the constraints of a specified bit rate. This paper presents research where multi-pass encoding is extended to the field of hyperspectral image compression. Unlike video, which is primarily intended to be viewed by a human observer, hyperspectral imagery is processed by computational algorithms that generally attempt to classify the pixel spectra within the imagery. As such, these algorithms are more sensitive to distortion in the spectral dimension of the image than they are to perceptual distortion in the spatial dimension. The compression algorithm developed for this research, which uses the Karhunen-Loeve transform for spectral decorrelation followed by a modified H.264/Advanced Video Coding (AVC) encoder, maintains a user-specified spectral quality level while maximizing the compression ratio throughout the encoding process. The compression performance may be considered near-lossless in certain scenarios. For qualitative purposes, this paper presents the performance of the compression algorithm for several Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) and Hyperion datasets using spectral angle as the spectral quality assessment function. Specifically, the compression performance is illustrated in the form of rate-distortion curves that plot spectral angle versus bits per pixel per band (bpppb).

Polymorphism in two biologically active dihydropyrimidinium hydrochloride derivatives: quantitative inputs towards the energetics associated with crystal packing.

PubMed

Panini, Piyush; Venugopala, K N; Odhav, Bharti; Chopra, Deepak

2014-08-01

A new polymorph belonging to the tetrahydropyrimidinium class of compounds, namely 6-(4-chlorophenyl)-5-(methoxycarbonyl)-4-methyl-2-(3-(trifluoromethylthio)phenylamino)-3,6-dihydropyrimidin-1-ium chloride, and a hydrate of 2-(3-bromophenylamino)-6-(4-chlorophenyl)-5-(methoxycarbonyl)-4-methyl-3,6-dihydropyrimidin-1-ium chloride, have been isolated and characterized using single-crystal X-ray diffraction (XRD). A detailed comprehensive analysis of the crystal packing in terms of the associated intermolecular interactions and a quantification of their interaction energies have been performed for both forms of the two different organic salts (A and B) using X-ray crystallography and computational methods such as density functional theory (DFT) quantum mechanical calculations, PIXEL lattice-energy calculations (with decomposition of total lattice energy into the Coulombic, polarization, dispersion and repulsion contribution), the calculation of the Madelung constant (the EUGEN method), Hirshfeld and two-dimensional fingerprint plots. The presence of ionic [N-H](+)···Cl(-) and [C-H](+)···Cl(-) hydrogen bonds mainly stabilizes the crystal packing in both forms A and B, while in the case of B·H2O [N-H](+)···O(water) and O(water)-H···Cl(-) hydrogen bonds along with [N-H](+)···Cl(-) and [C-H](+)···Cl(-) provide stability to the crystal packing. The lattice-energy calculations from both PIXEL and EUGEN methods revealed that in the case of A, form (I) (monoclinic) is more stable whereas for B it is the anhydrous form that is more stable. The analysis of the `Madelung mode' of crystal packing of two forms of A and B and its hydrates suggest that differences exist in the position of the charged ions/atoms in the organic solid state. The R/E (distance-energy) plots for all the crystal structures show that the molecular pairs in their crystal packing are connected with either highly stabilizing (due to the presence of organic R(+) and Cl(-)) or highly destabilizing Coulombic contacts. The difference in crystal packing and associated intermolecular interactions between polymorphs (in the case of A) or the hydrates (in the case of B) have been clearly elucidated by the analysis of Hirshfeld surfaces and two-dimensional fingerprint plots. The relative contributions of the various interactions to the Hirshfeld surface for the cationic (dihydropyrimidinium) part and anionic (chloride ion) part for the two forms of A and B and its hydrate were observed to be different.

Wildlife and habitat damage assessment from Hurricane Charley: recommendations for recovery of the J. N. "Ding" Darling National Wildlife Refuge Complex

USGS Publications Warehouse

Meyers, J. Michael; Langtimm, Catherine A.; Smith, Thomas J.; Pednault-Willett, Kendra

2006-01-01

• On 13 August 2004, the first of four hurricanes to strike Florida in <6 weeks came ashore near J. N. “Ding” Darling National Wildlife Refuge (JNDDNWR) Complex, Sanibel Island, Florida. The eye of Category 4 Hurricane Charley passed just north of Sanibel Island with maximum sustained winds of 145 mph (123 knots) and a storm surge of 0.3-2.7 m (1-9 ft). Three USGS-BRD scientists (coastal ecologist and research wildlife biologists) and a USFWS wildlife biologist surveyed the storm damage to JNDDNWR Complex on the ground from 20-24 September 2004. • At the request of United States Fish and Wildlife Service refuge staff, the USGS team concentrated on assessing damage to wetlands and habitat for selected bird populations (especially mangrove forests, Mangrove Cuckoos [Coccyzus minor], and Black-whiskered Vireo [Vireo altiloquus]), waterbird rookeries (mangrove islands), impoundments (waterbirds and waterfowl), sea grass beds (manatees), and upland hardwood hammocks and ridges (threatened eastern indigo snake [Drymarchon couperi]). • The refuge complex sustained moderate to catastrophic damage to vegetation, especially mangrove forests and waterbird nesting or roosting islands. Lumpkin Island, Hemp Island, and Bird Key waterbird nesting areas had >50% and sometimes 90% of their vegetation severely damaged (dead, broken tree stems, and tipped trees). The Shell Mound Trail area of JNDDNWR sustained catastrophic damage to its old growth mangrove forests. Direct storm mortality and injury to manatees in the area of the JNDDNWR Complex was probably slight as manatees may have several strategies to reduce storm mortality. Damage to seagrass beds, an important habitat for manatees, fishes and invertebrates, is believed to be limited to the breach at North Captiva Island. At this breach, refuge staff documented inundation of beds by sand and scarring by trees dragged by winds. • Because seagrass beads and manatee habitat extend beyond refuge boundaries (see p. 28), a regional approach with partner agencies to more thoroughly assess storm impacts and monitor recovery of seagrass and manatees is recommended. • Besides intensive monitoring of waterbirds and their nesting habitat (pre- and post-storm), the survey team recommends that the Mangrove Cuckoo be used as an indicator species for recovery of mangrove forests and also for monitoring songbirds at risk (this songbird is habitat-area sensitive). Black-whiskered Vireo may be another potential indicator species to monitor in mangrove forests. Monitoring for these species can be done by distance sampling on transects or by species presenceabsence from point counts. • Damaged vegetation should be monitored for recovery (permanent or long-term plots), especially where previous study plots have been established and with additional plots in mangrove forests of waterbird nesting islands and freshwater wetlands. • Potential loss of wetlands (and information for management) may be prevented by water level monitoring (3 permanent stations), locating the positions (GPS-GIS) and maintaining existing water control structures, creating a GIS map of the refuge with accurate vertical data, and monitoring and eradicating invasive plants. Invasive species, including Brazilian pepper (Schinus terebinthifolius) and air potato (Dioscorea bulbifora), were common in a very limited survey and may become more dominant in areas damaged by the storm. Special attention is needed to eradicate these exotic plants. • As an important monitoring goal, the survey team recommends that species presence-absence data analysis (with probability of detection) be used to determine changes in animal communities. This could be accomplished possibly with comparison to other storm-damaged and undamaged refuges in the Region. This information may be helpful to refuge managers when storms return in the future.

High-fidelity national carbon mapping for resource management and REDD+

PubMed Central

2013-01-01

Background High fidelity carbon mapping has the potential to greatly advance national resource management and to encourage international action toward climate change mitigation. However, carbon inventories based on field plots alone cannot capture the heterogeneity of carbon stocks, and thus remote sensing-assisted approaches are critically important to carbon mapping at regional to global scales. We advanced a high-resolution, national-scale carbon mapping approach applied to the Republic of Panama – one of the first UN REDD + partner countries. Results Integrating measurements of vegetation structure collected by airborne Light Detection and Ranging (LiDAR) with field inventory plots, we report LiDAR-estimated aboveground carbon stock errors of ~10% on any 1-ha land parcel across a wide range of ecological conditions. Critically, this shows that LiDAR provides a highly reliable replacement for inventory plots in areas lacking field data, both in humid tropical forests and among drier tropical vegetation types. We then scale up a systematically aligned LiDAR sampling of Panama using satellite data on topography, rainfall, and vegetation cover to model carbon stocks at 1-ha resolution with estimated average pixel-level uncertainty of 20.5 Mg C ha-1 nationwide. Conclusions The national carbon map revealed strong abiotic and human controls over Panamanian carbon stocks, and the new level of detail with estimated uncertainties for every individual hectare in the country sets Panama at the forefront in high-resolution ecosystem management. With this repeatable approach, carbon resource decision-making can be made on a geospatially explicit basis, enhancing human welfare and environmental protection. PMID:23866822

Over 150 years of long-term fertilization alters spatial scaling of microbial biodiversity

DOE PAGES

Liang, Yuting; Wu, Liyou; Clark, Ian M.; ...

2015-04-07

Spatial scaling is a critical issue in ecology, but how anthropogenic activities like fertilization affect spatial scaling is poorly understood, especially for microbial communities. Here, we determined the effects of long-term fertilization on the spatial scaling of microbial functional diversity and its relationships to plant diversity in the 150-year-old Park Grass Experiment, the oldest continuous grassland experiment in the world. Nested samples were taken from plots with contrasting inorganic fertilization regimes, and community DNAs were analyzed using the GeoChip-based functional gene array. The slopes of microbial gene-area relationships (GARs) and plant species-area relationships (SARs) were estimated in a plot receivingmore » nitrogen (N), phosphorus (P), and potassium (K) and a control plot without fertilization. Our results indicated that long-term inorganic fertilization significantly increased both microbial GARs and plant SARs. Microbial spatial turnover rates (i.e., z values) were less than 0.1 and were significantly higher in the fertilized plot (0.0583) than in the control plot (0.0449) (P < 0.0001). The z values also varied significantly with different functional genes involved in carbon (C), N, P, and sulfur (S) cycling and with various phylogenetic groups (archaea, bacteria, and fungi). Similarly, the plant SARs increased significantly (P < 0.0001), from 0.225 in the control plot to 0.419 in the fertilized plot. Soil fertilization, plant diversity, and spatial distance had roughly equal contributions in shaping the microbial functional community structure, while soil geochemical variables contributed less. These results indicated that long-term agricultural practice could alter the spatial scaling of microbial biodiversity. Determining the spatial scaling of microbial biodiversity and its response to human activities is important but challenging in microbial ecology. Most studies to date are based on different sites that may not be truly comparable or on short-term perturbations, and hence, the results observed could represent transient responses. This study examined the spatial patterns of microbial communities in response to different fertilization regimes at the Rothamsted Research Experimental Station, which has become an invaluable resource for ecologists, environmentalists, and soil scientists. The current study is the first showing that long-term fertilization has dramatic impacts on the spatial scaling of microbial communities. By identifying the spatial patterns in response to long-term fertilization and their underlying mechanisms, this study makes fundamental contributions to predictive understanding of microbial biogeography.« less

Over 150 years of long-term fertilization alters spatial scaling of microbial biodiversity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liang, Yuting; Wu, Liyou; Clark, Ian M.

Spatial scaling is a critical issue in ecology, but how anthropogenic activities like fertilization affect spatial scaling is poorly understood, especially for microbial communities. Here, we determined the effects of long-term fertilization on the spatial scaling of microbial functional diversity and its relationships to plant diversity in the 150-year-old Park Grass Experiment, the oldest continuous grassland experiment in the world. Nested samples were taken from plots with contrasting inorganic fertilization regimes, and community DNAs were analyzed using the GeoChip-based functional gene array. The slopes of microbial gene-area relationships (GARs) and plant species-area relationships (SARs) were estimated in a plot receivingmore » nitrogen (N), phosphorus (P), and potassium (K) and a control plot without fertilization. Our results indicated that long-term inorganic fertilization significantly increased both microbial GARs and plant SARs. Microbial spatial turnover rates (i.e., z values) were less than 0.1 and were significantly higher in the fertilized plot (0.0583) than in the control plot (0.0449) (P < 0.0001). The z values also varied significantly with different functional genes involved in carbon (C), N, P, and sulfur (S) cycling and with various phylogenetic groups (archaea, bacteria, and fungi). Similarly, the plant SARs increased significantly (P < 0.0001), from 0.225 in the control plot to 0.419 in the fertilized plot. Soil fertilization, plant diversity, and spatial distance had roughly equal contributions in shaping the microbial functional community structure, while soil geochemical variables contributed less. These results indicated that long-term agricultural practice could alter the spatial scaling of microbial biodiversity. Determining the spatial scaling of microbial biodiversity and its response to human activities is important but challenging in microbial ecology. Most studies to date are based on different sites that may not be truly comparable or on short-term perturbations, and hence, the results observed could represent transient responses. This study examined the spatial patterns of microbial communities in response to different fertilization regimes at the Rothamsted Research Experimental Station, which has become an invaluable resource for ecologists, environmentalists, and soil scientists. The current study is the first showing that long-term fertilization has dramatic impacts on the spatial scaling of microbial communities. By identifying the spatial patterns in response to long-term fertilization and their underlying mechanisms, this study makes fundamental contributions to predictive understanding of microbial biogeography.« less

Landsat Time-series for the Masses: Predicting Wood Biomass Growth from Tree-rings Using Departures from Mean Phenology in Google Earth Engine

NASA Astrophysics Data System (ADS)

Foster, J. R.; D'Amato, A. W.; Itter, M.; Reinikainen, M.; Curzon, M.

2017-12-01

The terrestrial carbon cycle is perturbed when disturbances remove leaf biomass from the forest canopy during the growing season. Changes in foliar biomass arise from defoliation caused by insects, disease, drought, frost or human management. As ephemeral disturbances, these often go undetected and their significance to models that predict forest growth from climatic drivers remains unknown. Here, we seek to distinguish the roles of weather vs. canopy disturbance on forest growth by using dense Landsat time-series to quantify departures in mean phenology that in turn predict changes in leaf biomass. We estimated a foliar biomass index (FBMI) from 1984-2016, and predict plot-level wood growth over 28 years on 156 tree-ring monitoring plots in Minnesota, USA. We accessed the entire Landsat archive (sensors 4, 5 & 7) to compute FBMI using Google Earth Engine's cloud computing platform (GEE). GEE allows this pixel-level approach to be applied at any location; a feature we demonstrate with published wood-growth data from flux tower sites. Our Bayesian models predicted biomass changes from tree-ring plots as a function of Landsat FBMI and annual climate data. We expected model parameters to vary by tree functional groups defined by differences in xylem anatomy and leaf longevity, two traits with linkages to phenology, as reported in a recent review. We found that Landsat FBMI was a surprisingly strong predictor of aggregate wood-growth, explaining up to 80% of annual growth variation for some deciduous plots. Growth responses to canopy disturbance varied among tree functional groups, and the importance of some seasonal climate metrics diminished or changed sign when FBMI was included (e.g. fall and spring climatic water deficit), while others remained unchanged (current and lagged summer deficit). Insights emerging from these models can clear up sources of persistent uncertainty and open a new frontier for models of forest productivity.

Modeling Species Distributions from Heterogeneous Data for the Biogeographic Regionalization of the European Bryophyte Flora

PubMed Central

Mateo, Rubén G.; Vanderpoorten, Alain; Muñoz, Jesús

2013-01-01

The definition of biogeographic regions provides a fundamental framework for a range of basic and applied questions in biogeography, evolutionary biology, systematics and conservation. Previous research suggested that environmental forcing results in highly congruent regionalization patterns across taxa, but that the size and number of regions depends on the dispersal ability of the taxa considered. We produced a biogeographic regionalization of European bryophytes and hypothesized that (1) regions defined for bryophytes would differ from those defined for other taxa due to the highly specific eco-physiology of the group and (2) their high dispersal ability would result in the resolution of few, large regions. Species distributions were recorded using 10,000 km2 MGRS pixels. Because of the lack of data across large portions of the area, species distribution models employing macroclimatic variables as predictors were used to determine the potential composition of empty pixels. K-means clustering analyses of the pixels based on their potential species composition were employed to define biogeographic regions. The optimal number of regions was determined by v-fold cross-validation and Moran’s I statistic. The spatial congruence of the regions identified from their potential bryophyte assemblages with large-scale vegetation patterns is at odds with our primary hypothesis. This reinforces the notion that post-glacial migration patterns might have been much more similar in bryophytes and vascular plants than previously thought. The substantially lower optimal number of clusters and the absence of nested patterns within the main biogeographic regions, as compared to identical analyses in vascular plants, support our second hypothesis. The modelling approach implemented here is, however, based on many assumptions that are discussed but can only be tested when additional data on species distributions become available, highlighting the substantial importance of developing integrated mapping projects for all taxa in key biogeographically areas of Europe, and the Mediterranean peninsulas in particular. PMID:23409015

Flag-based detection of weak gas signatures in long-wave infrared hyperspectral image sequences

NASA Astrophysics Data System (ADS)

Marrinan, Timothy; Beveridge, J. Ross; Draper, Bruce; Kirby, Michael; Peterson, Chris

2016-05-01

We present a flag manifold based method for detecting chemical plumes in long-wave infrared hyperspectral movies. The method encodes temporal and spatial information related to a hyperspectral pixel into a flag, or nested sequence of linear subspaces. The technique used to create the flags pushes information about the background clutter, ambient conditions, and potential chemical agents into the leading elements of the flags. Exploiting this temporal information allows for a detection algorithm that is sensitive to the presence of weak signals. This method is compared to existing techniques qualitatively on real data and quantitatively on synthetic data to show that the flag-based algorithm consistently performs better on data when the SINRdB is low, and beats the ACE and MF algorithms in probability of detection for low probabilities of false alarm even when the SINRdB is high.

IMDISP - INTERACTIVE IMAGE DISPLAY PROGRAM

NASA Technical Reports Server (NTRS)

Martin, M. D.

1994-01-01

The Interactive Image Display Program (IMDISP) is an interactive image display utility for the IBM Personal Computer (PC, XT and AT) and compatibles. Until recently, efforts to utilize small computer systems for display and analysis of scientific data have been hampered by the lack of sufficient data storage capacity to accomodate large image arrays. Most planetary images, for example, require nearly a megabyte of storage. The recent development of the "CDROM" (Compact Disk Read-Only Memory) storage technology makes possible the storage of up to 680 megabytes of data on a single 4.72-inch disk. IMDISP was developed for use with the CDROM storage system which is currently being evaluated by the Planetary Data System. The latest disks to be produced by the Planetary Data System are a set of three disks containing all of the images of Uranus acquired by the Voyager spacecraft. The images are in both compressed and uncompressed format. IMDISP can read the uncompressed images directly, but special software is provided to decompress the compressed images, which can not be processed directly. IMDISP can also display images stored on floppy or hard disks. A digital image is a picture converted to numerical form so that it can be stored and used in a computer. The image is divided into a matrix of small regions called picture elements, or pixels. The rows and columns of pixels are called "lines" and "samples", respectively. Each pixel has a numerical value, or DN (data number) value, quantifying the darkness or brightness of the image at that spot. In total, each pixel has an address (line number, sample number) and a DN value, which is all that the computer needs for processing. DISPLAY commands allow the IMDISP user to display all or part of an image at various positions on the display screen. The user may also zoom in and out from a point on the image defined by the cursor, and may pan around the image. To enable more or all of the original image to be displayed on the screen at once, the image can be "subsampled." For example, if the image were subsampled by a factor of 2, every other pixel from every other line would be displayed, starting from the upper left corner of the image. Any positive integer may be used for subsampling. The user may produce a histogram of an image file, which is a graph showing the number of pixels per DN value, or per range of DN values, for the entire image. IMDISP can also plot the DN value versus pixels along a line between two points on the image. The user can "stretch" or increase the contrast of an image by specifying low and high DN values; all pixels with values lower than the specified "low" will then become black, and all pixels higher than the specified "high" value will become white. Pixels between the low and high values will be evenly shaded between black and white. IMDISP is written in a modular form to make it easy to change it to work with different display devices or on other computers. The code can also be adapted for use in other application programs. There are device dependent image display modules, general image display subroutines, image I/O routines, and image label and command line parsing routines. The IMDISP system is written in C-language (94%) and Assembler (6%). It was implemented on an IBM PC with the MS DOS 3.21 operating system. IMDISP has a memory requirement of about 142k bytes. IMDISP was developed in 1989 and is a copyrighted work with all copyright vested in NASA. Additional planetary images can be obtained from the National Space Science Data Center at (301) 286-6695.

Magnetic-field-induced phase transition and sliding motion of charge-density waves in {eta}-Mo{sub 4}O{sub 11} crystals

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sasaki, M.; Hara, Y.; Inoue, M.

1997-02-01

Transverse magnetoresistance and Hall effect of the charge-density-wave (CDW) material {eta}-Mo{sub 4}O{sub 11} have been measured at 4.2 K (second CDW state) by dc and ac methods over the frequency range 50{endash}500 kHz in pulsed magnetic fields up to 40 T. These quantities are both reversible and frequency independent for a low-field sweep up to near 10 T (=H{sub c}), beyond which an appreciable frequency-dependent hysteresis effect appears. The Cole-Cole plots of the real versus imaginary parts of the magnetoresistance at high magnetic fields show a monodispersion. The magnetic-field dependence of the real part of the ac Hall resistivity showsmore » interesting behaviors, peaking near H{sub c}, followed by a decrease with H and a leveling off at high fields, while the imaginary components are very small and less frequency dependent. Using a multicarrier model consisting of the remaining and nested electron and hole bands, we have performed computer simulations for these dc and ac magnetotransport quantities, in satisfactory agreement with the observations. We have taken into account (1) the Zeeman effect for two types of the remaining hole and electron bands, (2) the CDW-gap narrowing of the nested electron and hole bands, (3) magnetic-field-induced CDW-to-normal phase transition in part of these nested bands, and (4) the magnetic-field-induced {open_quotes}CDW oscillation{close_quotes} around some mean position of the CDW condensates (or thermal excitation of the CDW phasons over a pinning potential), according to the existing CDW model. {copyright} {ital 1997} {ital The American Physical Society}« less

Derivative Analysis of AVIRIS Data for Crop Stress Detection

NASA Technical Reports Server (NTRS)

Estep, Lee; Carter, Gregory A.; Berglund, Judith

2003-01-01

Low-altitude Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) hyperspectral imagery of a cornfield in Nebraska was used to determine whether derivative analysis methods provided enhanced plant stress detection compared with narrow-band ratios. The field was divided into 20 plots representing 4 replicates each of 5 nitrogen (N) fertilization treatments that ranged from 0 to 200 kg N/ha in 50 kg/ha increments. The imagery yielded a 3 m ground pixel size for 224 spectral bands. Derivative analysis provided no advantage in stress detection compared with the performance of narrow-band indices derived from the literature. This result was attributed to a high leaf area index at the time of overflight (LAI approx. equal to 5 to 6t) and the high signal-to-noise character of the narrow AVIRIS bands.

A Method for Calculating the Area of Zostera marina Leaves from Digital Images with Noise Induced by Humidity Content

PubMed Central

Leal-Ramirez, Cecilia

2014-01-01

Despite the ecological importance of eelgrass, nowadays anthropogenic influences have produced deleterious effects in many meadows worldwide. Transplantation plots are commonly used as a feasible remediation scheme. The characterization of eelgrass biomass and its dynamics is an important input for the assessment of the overall status of both natural and transplanted populations. Particularly, in restoration plots it is desirable to obtain nondestructive assessments of these variables. Allometric models allow the expression of above ground biomass and productivity of eelgrass in terms of leaf area, which provides cost effective and nondestructive assessments. Leaf area in eelgrass can be conveniently obtained by the product of associated length and width. Although these variables can be directly measured on most sampled leaves, digital image methods could be adapted in order to simplify measurements. Nonetheless, since width to length ratios in eelgrass leaves could be even negligible, noise induced by leaf humidity content could produce misidentification of pixels along the peripheral contour of leaves images. In this paper, we present a procedure aimed to produce consistent estimations of eelgrass leaf area in the presence of the aforementioned noise effects. Our results show that digital image procedures can provide reliable, nondestructive estimations of eelgrass leaf area. PMID:24892089

Spatial aggregation of holistically-nested convolutional neural networks for automated pancreas localization and segmentation.

PubMed

Roth, Holger R; Lu, Le; Lay, Nathan; Harrison, Adam P; Farag, Amal; Sohn, Andrew; Summers, Ronald M

2018-04-01

Accurate and automatic organ segmentation from 3D radiological scans is an important yet challenging problem for medical image analysis. Specifically, as a small, soft, and flexible abdominal organ, the pancreas demonstrates very high inter-patient anatomical variability in both its shape and volume. This inhibits traditional automated segmentation methods from achieving high accuracies, especially compared to the performance obtained for other organs, such as the liver, heart or kidneys. To fill this gap, we present an automated system from 3D computed tomography (CT) volumes that is based on a two-stage cascaded approach-pancreas localization and pancreas segmentation. For the first step, we localize the pancreas from the entire 3D CT scan, providing a reliable bounding box for the more refined segmentation step. We introduce a fully deep-learning approach, based on an efficient application of holistically-nested convolutional networks (HNNs) on the three orthogonal axial, sagittal, and coronal views. The resulting HNN per-pixel probability maps are then fused using pooling to reliably produce a 3D bounding box of the pancreas that maximizes the recall. We show that our introduced localizer compares favorably to both a conventional non-deep-learning method and a recent hybrid approach based on spatial aggregation of superpixels using random forest classification. The second, segmentation, phase operates within the computed bounding box and integrates semantic mid-level cues of deeply-learned organ interior and boundary maps, obtained by two additional and separate realizations of HNNs. By integrating these two mid-level cues, our method is capable of generating boundary-preserving pixel-wise class label maps that result in the final pancreas segmentation. Quantitative evaluation is performed on a publicly available dataset of 82 patient CT scans using 4-fold cross-validation (CV). We achieve a (mean  ±  std. dev.) Dice similarity coefficient (DSC) of 81.27 ± 6.27% in validation, which significantly outperforms both a previous state-of-the art method and a preliminary version of this work that report DSCs of 71.80 ± 10.70% and 78.01 ± 8.20%, respectively, using the same dataset. Copyright © 2018. Published by Elsevier B.V.

TH-CD-207A-10: Using the Gamma Index to Flag Changes in Anatomy During Radiation Therapy of Head and Neck Cancer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schaly, B; Battista, J; Department of Medical Biophysics, Western University, London, Ontario Canada

Purpose: This article presents a fast algorithm for comparing 3-D anatomy from Cone-Beam CT (CBCT) imaging using the gamma comparison index and to demonstrate how this can be used to flag patients for possible re-planning of treatment. Methods: CBCT scans acquired on a Varian linear accelerator during treatment were used as input to the gamma comparator using thresholds of 5 mm distance to agreement and 30 Hounsfield Unit CT number difference. The fraction 1 CBCT study was initially used as the reference. Should there be a re-plan during treatment, the reference resets to the CBCT study acquired on the daymore » 1 of the re-plan. Histograms of failing pixels (γ > 1) were generated from each 3-D gamma map. An indicator of anatomy congruence, the match quality parameter (MQP), was derived from failed pixel histograms using the 90th percentile gamma value. The MQP was plotted versus fraction number and related to actual repeat computed tomography (re-CT) order dates as decided by a radiation oncologist. From this, decision criteria were derived for the algorithm to “trigger” re-CT consideration and predictive power was scored using receiver-operator characteristic (ROC) analysis. Results: The MQP plot generally showed that the on-line match from CBCT image guidance deteriorated as the treatment progressed due to weight loss and tumor regression. The optimized MQP criteria for triggering re-CT consideration demonstrated high sensitivity and specificity, consistent with actual re-CT order dates within ± 3 fractions. Out of 20 patients that were actually re-planned, the algorithm failed to trigger a re-CT recommendation only twice and this was caused by CBCT ring artifacts. Conclusion: We have demonstrated that gamma comparisons can be used to evaluate CBCT-acquired anatomy pairs and, from this, an algorithm can be “trained” to flag patients for possible re-planning in a manner consistent with local radiation oncology practice.« less

A low cost surface plasmon resonance biosensor using a laser line generator

NASA Astrophysics Data System (ADS)

Chen, Ruipeng; Wang, Manping; Wang, Shun; Liang, Hao; Hu, Xinran; Sun, Xiaohui; Zhu, Juanhua; Ma, Liuzheng; Jiang, Min; Hu, Jiandong; Li, Jianwei

2015-08-01

Due to the instrument designed by using a common surface plasmon resonance biosensor is extremely expensive, we established a portable and cost-effective surface plasmon resonance biosensing system. It is mainly composed of laser line generator, P-polarizer, customized prism, microfluidic cell, and line Charge Coupled Device (CCD) array. Microprocessor PIC24FJ128GA006 with embedded A/D converter, communication interface circuit and photoelectric signal amplifier circuit are used to obtain the weak signals from the biosensing system. Moreover, the line CCD module is checked and optimized on the number of pixels, pixels dimension, output amplifier and the timing diagram. The micro-flow cell is made of stainless steel with a high thermal conductivity, and the microprocessor based Proportional-Integral-Derivative (PID) temperature-controlled algorithm was designed to keep the constant temperature (25 °C) of the sample solutions. Correspondingly, the data algorithms designed especially to this biosensing system including amplitude-limiting filtering algorithm, data normalization and curve plotting were programmed efficiently. To validate the performance of the biosensor, ethanol solution samples at the concentrations of 5%, 7.5%, 10%, 12.5% and 15% in volumetric fractions were used, respectively. The fitting equation ΔRU = - 752987.265 + 570237.348 × RI with the R-Square of 0.97344 was established by delta response units (ΔRUs) to refractive indexes (RI). The maximum relative standard deviation (RSD) of 4.8% was obtained.

Phenological Parameters Estimation Tool

NASA Technical Reports Server (NTRS)

McKellip, Rodney D.; Ross, Kenton W.; Spruce, Joseph P.; Smoot, James C.; Ryan, Robert E.; Gasser, Gerald E.; Prados, Donald L.; Vaughan, Ronald D.

2010-01-01

The Phenological Parameters Estimation Tool (PPET) is a set of algorithms implemented in MATLAB that estimates key vegetative phenological parameters. For a given year, the PPET software package takes in temporally processed vegetation index data (3D spatio-temporal arrays) generated by the time series product tool (TSPT) and outputs spatial grids (2D arrays) of vegetation phenological parameters. As a precursor to PPET, the TSPT uses quality information for each pixel of each date to remove bad or suspect data, and then interpolates and digitally fills data voids in the time series to produce a continuous, smoothed vegetation index product. During processing, the TSPT displays NDVI (Normalized Difference Vegetation Index) time series plots and images from the temporally processed pixels. Both the TSPT and PPET currently use moderate resolution imaging spectroradiometer (MODIS) satellite multispectral data as a default, but each software package is modifiable and could be used with any high-temporal-rate remote sensing data collection system that is capable of producing vegetation indices. Raw MODIS data from the Aqua and Terra satellites is processed using the TSPT to generate a filtered time series data product. The PPET then uses the TSPT output to generate phenological parameters for desired locations. PPET output data tiles are mosaicked into a Conterminous United States (CONUS) data layer using ERDAS IMAGINE, or equivalent software package. Mosaics of the vegetation phenology data products are then reprojected to the desired map projection using ERDAS IMAGINE

Frequency-domain preprocessing and directional correlation-based feature extraction for classification of the buried objects using GPR B-scan data

NASA Astrophysics Data System (ADS)

Bahadirlar, Yildirim; Kaplan, Gulay B.

2004-09-01

A new preprocessing and feature extracting approach for classification of non-metallic buried objects are aimed using GPR B-scan data. A frequency-domain adaptive filter without a reference channel effectively removes the background signal resulting mostly from the discontinuity on the air-to-ground path of the electromagnetic waves. The filter only needs average of the first five A-scans as the reference signal for this elimination, and also serves for masking of the B-scan in the frequency-domain. A preprocessed GPR data with significantly suppressed clutter is then obtained by precisely positioning the Hanning window in the frequency-domain. A directional correlation function defined over a B-scan frame gives distinctive curves of buried objects. The main axis of directional correlation, on which the pivotal correlating pixels and short lines of pixels being correlated are considered, makes an angle to the scanning direction of the B-scan. This form of correlation is applied to the frame from the left-hand and the right-hand side and two over-plotted curves are obtained. Nine measures as features emphasizing directional signatures are extracted from these curves. Nine-element feature vectors are applied to the two-layer Artificial Neural Network and preliminary results over test set are promising to continue to comprehensive training and testing processes.

LAI inversion algorithm based on directional reflectance kernels.

PubMed

Tang, S; Chen, J M; Zhu, Q; Li, X; Chen, M; Sun, R; Zhou, Y; Deng, F; Xie, D

2007-11-01

Leaf area index (LAI) is an important ecological and environmental parameter. A new LAI algorithm is developed using the principles of ground LAI measurements based on canopy gap fraction. First, the relationship between LAI and gap fraction at various zenith angles is derived from the definition of LAI. Then, the directional gap fraction is acquired from a remote sensing bidirectional reflectance distribution function (BRDF) product. This acquisition is obtained by using a kernel driven model and a large-scale directional gap fraction algorithm. The algorithm has been applied to estimate a LAI distribution in China in mid-July 2002. The ground data acquired from two field experiments in Changbai Mountain and Qilian Mountain were used to validate the algorithm. To resolve the scale discrepancy between high resolution ground observations and low resolution remote sensing data, two TM images with a resolution approaching the size of ground plots were used to relate the coarse resolution LAI map to ground measurements. First, an empirical relationship between the measured LAI and a vegetation index was established. Next, a high resolution LAI map was generated using the relationship. The LAI value of a low resolution pixel was calculated from the area-weighted sum of high resolution LAIs composing the low resolution pixel. The results of this comparison showed that the inversion algorithm has an accuracy of 82%. Factors that may influence the accuracy are also discussed in this paper.

Monitoring Liverworts to Evaluate the Effectiveness of Hydroriparian Buffers

NASA Astrophysics Data System (ADS)

Higgins, Kellina L.; Yasué, Maï

2014-01-01

In the coastal temperate rainforest of British Columbia (BC) in western Canada, government policies stipulate that foresters leave unlogged hydroriparian buffer strips up to 25 m on each side of streams to protect wildlife habitat. At present, studies on the effectiveness of these buffers focus on mammals, birds, and amphibians while there is comparably little information on smaller organisms such as liverworts in these hydroriparian buffers. To address this gap of knowledge, we conducted field surveys of liverworts comparing the percent cover and community composition in hydroriparian forested areas ( n = 4 sites, n = 32 plots with nested design) to hydroriparian buffer zones ( n = 4 sites, n = 32 plots). We also examined how substrate type affected the cover of liverworts. Liverwort communities in buffers were similar to those in riparian forest areas and most liverworts were found on downed wood. Thus, hydroriparian buffers of 25-35 m on each side in a coastal temperate rainforest effectively provide habitat for liverworts as long as downed wood is left intact in the landscape. Because liverworts are particularly sensitive to changes in humidity, these results may indicate that hydroriparian buffers are an effective management strategy for bryophytes and possibly for a range of other riparian species that are particularly sensitive to forestry-related changes in microclimate.

Analysis of forest disturbance using TM and AVHRR data

NASA Technical Reports Server (NTRS)

Spanner, Michael A.; Hlavka, Christine A.; Pierce, Lars L.

1989-01-01

A methodology that will be used to determine the proportions of undisturbed, successional vegetation and recently disturbed land cover within coniferous forests using remotely sensed data from the advanced very high resolution radiometer (AVHRR) is presented. The method uses thematic mapper (TM) data to determine the proportions of the three stages of forest disturbance and regrowth for each AVHRR pixel in the sample areas, and is then applied to interpret all AVHRR imagery. Preliminary results indicate that there are predictable relationships between TM spectral response and the disturbance classes. Analysis of ellipse plots from a TM classification of the disturbed forested landscape indicates that the forest classes are separable in the red (0.63-0.69 micron) and near-infrared (0.76-0.90 micron) bands, providing evidence that the proportion of disturbance classes may be determined from AVHRR data.

Ice/frost detection using millimeter wave radiometry. [space shuttle external tank

NASA Technical Reports Server (NTRS)

Gagliano, J. A.; Newton, J. M.; Davis, A. R.; Foster, M. L.

1981-01-01

A series of ice detection tests was performed on the shuttle external tank (ET) and on ET target samples using a 35/95 GHz instrumentation radiometer. Ice was formed using liquid nitrogen and water spray inside a test enclosure containing ET spray on foam insulation samples. During cryogenic fueling operations prior to the shuttle orbiter engine firing tests, ice was formed with freon and water over a one meter square section of the ET LOX tank. Data analysis was performed on the ice signatures, collected by the radiometer, using Georgia Tech computing facilities. Data analysis technique developed include: ice signature images of scanned ET target; pixel temperature contour plots; time correlation of target data with ice present versus no ice formation; and ice signature radiometric temperature statistical data, i.e., mean, variance, and standard deviation.

Relation of MODIS EVI and LAI across time, vegetation types and hydrological regimes

NASA Astrophysics Data System (ADS)

Alexandridis, Thomas; Ovakoglou, George

2015-04-01

Estimation of the Leaf Area Index (LAI) of a landscape is considered important to describe the ecosystems activity and is used as an important input parameter in hydrological and biogeochemical models related to water and carbon cycle, desertification risk, etc. The measurement of LAI in the field is a laborious and costly process and is mainly done by indirect methods, such as hemispherical photographs that are processed by specialized software. For this reason there have been several attempts to estimate LAI with multispectral satellite images, using theoretical biomass development models, or empirical equations using vegetation indices and land cover maps. The aim of this work is to study the relation of MODIS EVI and LAI across time, vegetation type, and hydrological regime. This was achieved by studying 120 maps of EVI and LAI which cover a hydrological year and five hydrologically diverse areas: river Nestos in Greece, Queimados catchment in Brazil, Rijnland catchment in The Netherlands, river Tamega in Portugal, and river Umbeluzi in Mozambique. The following Terra MODIS composite datasets were downloaded for the hydrological year 2012-2013: MOD13A2 "Vegetation Indices" and MCD15A2 "LAI and FPAR", as well as the equivalent quality information layers (QA). All the pixels that fall in a vegetation land cover (according to the MERIS GLOBCOVER map) were sampled for the analysis, with the exception of those that fell at the border between two vegetation or other land cover categories, to avoid the influence of mixed pixels. Using linear regression analysis, the relationship between EVI and LAI was identified per date, vegetation type and study area. Results show that vegetation type has the highest influence in the variation of the relationship between EVI and LAI in each study area. The coefficient of determination (R2) is high and statistically significant (ranging from 0.41 to 0.83 in 90% of the cases). When plotting the EVI factor from the regression equation across time, there is an evident temporal change in all test sites. The sensitivity of EVI to LAI is smaller in periods of high biomass production. The range of fluctuation is different across sites, and is related to biomass quantity and type. Higher fluctuation is noted in the winter season in Tamega, possibly due to cloud infected pixels that the QA and compositing algorithms did not successfully detect. Finally, there was no significant difference in the R2 and EVI factor when including in the analyses pixels indicated as "low and marginal quality" by the QA layers, thus suggesting that the use of low quality pixels can be justified when good quality pixels are not enough. Future work will study the transferability of these relations across scales and sensors. This study is supported by the Research Committee of Aristotle University of Thessaloniki project "Improvement of the estimation of Leaf Area Index (LAI) at basin scale using satellite images". MODIS data are provided by USGS.

Interspecific variation in the relationship between clutch size, laying date and intensity of urbanization in four species of hole-nesting birds.

PubMed

Vaugoyeau, Marie; Adriaensen, Frank; Artemyev, Alexandr; Bańbura, Jerzy; Barba, Emilio; Biard, Clotilde; Blondel, Jacques; Bouslama, Zihad; Bouvier, Jean-Charles; Camprodon, Jordi; Cecere, Francesco; Charmantier, Anne; Charter, Motti; Cichoń, Mariusz; Cusimano, Camillo; Czeszczewik, Dorota; Demeyrier, Virginie; Doligez, Blandine; Doutrelant, Claire; Dubiec, Anna; Eens, Marcel; Eeva, Tapio; Faivre, Bruno; Ferns, Peter N; Forsman, Jukka T; García-Del-Rey, Eduardo; Goldshtein, Aya; Goodenough, Anne E; Gosler, Andrew G; Grégoire, Arnaud; Gustafsson, Lars; Harnist, Iga; Hartley, Ian R; Heeb, Philipp; Hinsley, Shelley A; Isenmann, Paul; Jacob, Staffan; Juškaitis, Rimvydas; Korpimäki, Erkki; Krams, Indrikis; Laaksonen, Toni; Lambrechts, Marcel M; Leclercq, Bernard; Lehikoinen, Esa; Loukola, Olli; Lundberg, Arne; Mainwaring, Mark C; Mänd, Raivo; Massa, Bruno; Mazgajski, Tomasz D; Merino, Santiago; Mitrus, Cezary; Mönkkönen, Mikko; Morin, Xavier; Nager, Ruedi G; Nilsson, Jan-Åke; Nilsson, Sven G; Norte, Ana C; Orell, Markku; Perret, Philippe; Perrins, Christopher M; Pimentel, Carla S; Pinxten, Rianne; Richner, Heinz; Robles, Hugo; Rytkönen, Seppo; Senar, Juan Carlos; Seppänen, Janne T; Pascoal da Silva, Luis; Slagsvold, Tore; Solonen, Tapio; Sorace, Alberto; Stenning, Martyn J; Tryjanowski, Piotr; von Numers, Mikael; Walankiewicz, Wieslaw; Møller, Anders Pape

2016-08-01

The increase in size of human populations in urban and agricultural areas has resulted in considerable habitat conversion globally. Such anthropogenic areas have specific environmental characteristics, which influence the physiology, life history, and population dynamics of plants and animals. For example, the date of bud burst is advanced in urban compared to nearby natural areas. In some birds, breeding success is determined by synchrony between timing of breeding and peak food abundance. Pertinently, caterpillars are an important food source for the nestlings of many bird species, and their abundance is influenced by environmental factors such as temperature and date of bud burst. Higher temperatures and advanced date of bud burst in urban areas could advance peak caterpillar abundance and thus affect breeding phenology of birds. In order to test whether laying date advance and clutch sizes decrease with the intensity of urbanization, we analyzed the timing of breeding and clutch size in relation to intensity of urbanization as a measure of human impact in 199 nest box plots across Europe, North Africa, and the Middle East (i.e., the Western Palearctic) for four species of hole-nesters: blue tits (Cyanistes caeruleus), great tits (Parus major), collared flycatchers (Ficedula albicollis), and pied flycatchers (Ficedula hypoleuca). Meanwhile, we estimated the intensity of urbanization as the density of buildings surrounding study plots measured on orthophotographs. For the four study species, the intensity of urbanization was not correlated with laying date. Clutch size in blue and great tits does not seem affected by the intensity of urbanization, while in collared and pied flycatchers it decreased with increasing intensity of urbanization. This is the first large-scale study showing a species-specific major correlation between intensity of urbanization and the ecology of breeding. The underlying mechanisms for the relationships between life history and urbanization remain to be determined. We propose that effects of food abundance or quality, temperature, noise, pollution, or disturbance by humans may on their own or in combination affect laying date and/or clutch size.

Very high resolution Earth observation features for monitoring plant and animal community structure across multiple spatial scales in protected areas

NASA Astrophysics Data System (ADS)

Mairota, Paola; Cafarelli, Barbara; Labadessa, Rocco; Lovergine, Francesco; Tarantino, Cristina; Lucas, Richard M.; Nagendra, Harini; Didham, Raphael K.

2015-05-01

Monitoring the status and future trends in biodiversity can be prohibitively expensive using ground-based surveys. Consequently, significant effort is being invested in the use of satellite remote sensing to represent aspects of the proximate mechanisms (e.g., resource availability) that can be related to biodiversity surrogates (BS) such as species community descriptors. We explored the potential of very high resolution (VHR) satellite Earth observation (EO) features as proxies for habitat structural attributes that influence spatial variation in habitat quality and biodiversity change. In a semi-natural grassland mosaic of conservation concern in southern Italy, we employed a hierarchical nested sampling strategy to collect field and VHR-EO data across three spatial extent levels (landscape, patch and plot). Species incidence and abundance data were collected at the plot level for plant, insect and bird functional groups. Spectral and textural VHR-EO image features were derived from a Worldview-2 image. Three window sizes (grains) were tested for analysis and computation of textural features, guided by the perception limits of different organisms. The modelled relationships between VHR-EO features and BS responses differed across scales, suggesting that landscape, patch and plot levels are respectively most appropriate when dealing with birds, plants and insects. This research demonstrates the potential of VHR-EO for biodiversity mapping and habitat modelling, and highlights the importance of identifying the appropriate scale of analysis for specific taxonomic groups of interest. Further, textural features are important in the modelling of functional group-specific indices which represent BS in high conservation value habitat types, and provide a more direct link to species interaction networks and ecosystem functioning, than provided by traditional taxonomic diversity indices.

Plant species richness at different scales in native and exotic grasslands in Southeastern Arizona

USGS Publications Warehouse

McLaughlin, S.P.; Bowers, Janice E.

2006-01-01

Species richness in Madrean mixed-grass prairies dominated by native or exotic species in southeastern Arizona was characterized at the community and point scales using ten 1-m2 quadrats nested within each of eight 1000-m2 plots. In the 1000-m2 plots average richness was significantly higher in oak savanna (OS, 121.0 species) than in exotic grassland on mesa tops (EMT, 52.0 species), whereas native grassland on mesa slopes (NMS, 92.5 species) and native grassland on mesa tops (NMT, 77.0 species) did not differ significantly in richness from OS or EMT When richness was partitioned by life form, EMT was notably poorer than other community types in species of perennial grasses, perennial herbs, and summer annuals. In the 1-m2 quadrats, OS (21.2 species), NMS (20.9 species), and NMT (20.7 species) were significantly richer than EMT (5.9 species). Cover in 1-m2 plots was significantly higher in EMT than in NMT, NMS, or OS. Species richness at the point scale showed a unimodal relation to canopy cover, with cover accounting for 30% of the variation in number of species in 1-m2 quadrats. Competitive exclusion and allelopathy have perhaps limited species richness at the point scale in exotic grassland. There was no evidence of a species-pool effect between point and community scales, but such an effect between community and landscape scales was supported. Madrean mixed-grass prairies are landscapes with high species richness in comparison to other grassland types in North America, providing a large pool of potential colonizing species at the community scale. Beta-diversity (between communities) within the landscape of the Appleton-Whittell Research Ranch was consequently high despite a relative lack of habitat diversity.

Intensity ratio curve analysis of small renal masses on T2-weighted magnetic resonance imaging: Differentiation of fat-poor angiomyolipoma from renal cell carcinoma.

PubMed

Moriyama, Shingo; Yoshida, Soichiro; Tanaka, Hajime; Tanaka, Hiroshi; Yokoyama, Minato; Ishioka, Junichiro; Matsuoka, Yoh; Saito, Kazutaka; Kihara, Kazunori; Fujii, Yasuhisa

2018-03-25

To assess the diagnostic ability of a pixel intensity-based analysis in evaluating the magnetic resonance imaging characteristics of small renal masses, especially in differentiating fat-poor angiomyolipoma from renal cell carcinoma. T2-weighted images from 121 solid small renal masses (<4 cm) without visible fat (14 fat-poor angiomyolipomas, 92 clear cell renal cell carcinomas, six chromophobe renal cell carcinomas and nine papillary renal cell carcinomas) were retrospectively evaluated. An intensity ratio curve was plotted using intensity ratios, which were ratios of signal intensities of tumor pixels (each pixel along a linear region of interest drawn across the renal tumor on T2-weighted image) to the signal intensity of a normal renal cortex. The diagnostic ability of the intensity ratio curve analysis was evaluated. The tumors were classified into three types: intensity ratio fat-poor angiomyolipoma (n = 19) with no pseudocapsule, iso-low intensity and no heterogeneity; intensity ratio clear cell renal cell carcinoma (n = 76) with a pseudocapsule, iso-high intensity and heterogeneity; and other type of intensity ratio (n = 26), including tumors that did not fall into the above two categories. The sensitivity/specificity/accuracy of the intensity ratio curve analysis in diagnosing fat-poor angiomyolipoma was 93%/94%/94%, respectively. When the intensity ratio curve analysis was applied only to the tumor with undetermined radiological diagnosis, the sensitivity for diagnosing fat-poor angiomyolipoma compared with subjective reading alone significantly improved (93% vs 50%; P = 0.014). Our novel semiquantitative model for combined assessment of key features of fat-poor angiomyolipoma, including low intensity, homogeneity and absence of a pseudocapsule on T2-weighted image, might make diagnosis of fat-poor angiomyolipoma more accurate. © 2018 The Japanese Urological Association.

Detection of Single Standing Dead Trees from Aerial Color Infrared Imagery by Segmentation with Shape and Intensity Priors

NASA Astrophysics Data System (ADS)

Polewski, P.; Yao, W.; Heurich, M.; Krzystek, P.; Stilla, U.

2015-03-01

Standing dead trees, known as snags, are an essential factor in maintaining biodiversity in forest ecosystems. Combined with their role as carbon sinks, this makes for a compelling reason to study their spatial distribution. This paper presents an integrated method to detect and delineate individual dead tree crowns from color infrared aerial imagery. Our approach consists of two steps which incorporate statistical information about prior distributions of both the image intensities and the shapes of the target objects. In the first step, we perform a Gaussian Mixture Model clustering in the pixel color space with priors on the cluster means, obtaining up to 3 components corresponding to dead trees, living trees, and shadows. We then refine the dead tree regions using a level set segmentation method enriched with a generative model of the dead trees' shape distribution as well as a discriminative model of their pixel intensity distribution. The iterative application of the statistical shape template yields the set of delineated dead crowns. The prior information enforces the consistency of the template's shape variation with the shape manifold defined by manually labeled training examples, which makes it possible to separate crowns located in close proximity and prevents the formation of large crown clusters. Also, the statistical information built into the segmentation gives rise to an implicit detection scheme, because the shape template evolves towards an empty contour if not enough evidence for the object is present in the image. We test our method on 3 sample plots from the Bavarian Forest National Park with reference data obtained by manually marking individual dead tree polygons in the images. Our results are scenario-dependent and range from a correctness/completeness of 0.71/0.81 up to 0.77/1, with an average center-of-gravity displacement of 3-5 pixels between the detected and reference polygons.

A comparative study of 2 computer-assisted methods of quantifying brightfield microscopy images.

PubMed

Tse, George H; Marson, Lorna P

2013-10-01

Immunohistochemistry continues to be a powerful tool for the detection of antigens. There are several commercially available software packages that allow image analysis; however, these can be complex, require relatively high level of computer skills, and can be expensive. We compared 2 commonly available software packages, Adobe Photoshop CS6 and ImageJ, in their ability to quantify percentage positive area after picrosirius red (PSR) staining and 3,3'-diaminobenzidine (DAB) staining. On analysis of DAB-stained B cells in the mouse spleen, with a biotinylated primary rat anti-mouse-B220 antibody, there was no significant difference on converting images from brightfield microscopy to binary images to measure black and white pixels using ImageJ compared with measuring a range of brown pixels with Photoshop (Student t test, P=0.243, correlation r=0.985). When analyzing mouse kidney allografts stained with PSR, Photoshop achieved a greater interquartile range while maintaining a lower 10th percentile value compared with analysis with ImageJ. A lower 10% percentile reflects that Photoshop analysis is better at analyzing tissues with low levels of positive pixels; particularly relevant for control tissues or negative controls, whereas after ImageJ analysis the same images would result in spuriously high levels of positivity. Furthermore comparing the 2 methods by Bland-Altman plot revealed that these 2 methodologies did not agree when measuring images with a higher percentage of positive staining and correlation was poor (r=0.804). We conclude that for computer-assisted analysis of images of DAB-stained tissue there is no difference between using Photoshop or ImageJ. However, for analysis of color images where differentiation into a binary pattern is not easy, such as with PSR, Photoshop is superior at identifying higher levels of positivity while maintaining differentiation of low levels of positive staining.

Monitoring ecosystem reclamation recovery using optical remote sensing: Comparison with field measurements and eddy covariance.

PubMed

Chasmer, L; Baker, T; Carey, S K; Straker, J; Strilesky, S; Petrone, R

2018-06-12

Time series remote sensing vegetation indices derived from SPOT 5 data are compared with vegetation structure and eddy covariance flux data at 15 dry to wet reclamation and reference sites within the Oil Sands region of Alberta, Canada. This comprehensive analysis examines the linkages between indicators of ecosystem function and change trajectories observed both at the plot level and within pixels. Using SPOT imagery, we find that higher spatial resolution datasets (e.g. 10 m) improves the relationship between vegetation indices and structural measurements compared with interpolated (lower resolution) pixels. The simple ratio (SR) vegetation index performs best when compared with stem density-based indicators (R 2  = 0.65; p < 0.00), while the normalised difference vegetation index (NDVI) and soil adjusted vegetation index (SAVI) are most comparable to foliage indicators (leaf area index (LAI) and canopy cover (R 2  = 0.52-0.78; p > 0.02). Fluxes (net ecosystem production (NEP) and gross ecosystem production (GEP)) are most related to NDVI and SAVI when these are interpolated to larger 20 m × 20 m pixels (R 2  = 0.44-0.50; p < 0.00). As expected, decreased sensitivity of NDVI is problematic for sites with LAI > 3 m 2  m -2 , making this index more appropriate for newly regenerating reclamation areas. For sites with LAI < 3 m 2  m -2 , trajectories of vegetation change can be mapped over time and are within 2.7% and 3.3% of annual measured LAI changes observed at most sites. This study demonstrates the utility of remote sensing in combination with field and eddy covariance data for monitoring and scaling of reclaimed and reference site productivity within and beyond the Oil Sands Region of western Canada. Copyright © 2018 Elsevier B.V. All rights reserved.

Differential exhumation at eastern margin of the Tibetan Plateau, from apatite fission-track thermochronology

NASA Astrophysics Data System (ADS)

Deng, Bin; Liu, Shu-gen; Li, Zhi-wu; Jansa, Luba F.; Liu, Shun; Wang, Guo-zhi; Sun, Wei

2013-04-01

New apatite fission-track (AFT) ages from Mesozoic sediments in the Sichuan basin, combined with previous fission-track data, demonstrate differential uplift and exhumation across the basin. Particularly significant change in exhumation (at least ~ 2000 m) was found across the Huaying Mts. Modeled temperature-time histories and the Boomerang plot of AFT dataset across the basin suggest rapid cooling and exhumation events during 120-80 Ma and at 20-10 Ma. They reflect the start of the basin-scale differential uplift and exhumation which effected the eastern growth of Tibetan Plateau. In particular, nested old-age center separated by Huaying Mts. was found in the center-to-northwest part of the Sichuan basin. A simplified one-dimensional, steady-state solution model was developed to calculate the mean exhumation rate, which is 0.05-0.2 mm/yr in most parts of the basin. It suggests a slow exhumation across much of the basin. The regional pattern of AFT age, length and erosion rate supports a progressive change from the nested old-age center towards the southwest. This pattern supports the idea of a prolonged, steady-state uplift and exhumation process across the basin, controlled by cratonic basin structure. The eastern growth of the Tibetan Plateau has exerted a significant effect on the rapid exhumation of the southwestern part of the Sichuan basin, but not on all of the basin during the Late Cenozoic.

Bald eagle winter roost characteristics in Lava Beds National Monument, California

USGS Publications Warehouse

Stohlgren, Thomas J.

1993-01-01

This study provided a survey of bald eagle (Haliaeetus leucocephalus) winter roost habitat (in 4 km2 of potential roost areas) in southern Lava Beds National Monument, California. A systematic-clustered sampling design (n=381 plots) was used to compare forest stand characteristics in two primary roost areas (Caldwell Butte and Eagle Nest Butte) and two potential roost areas (Hidden Valley and Island Butte). A 100 percent inventory of roost trees in Caldwell Butte (n=103 trees) and Eagle Nest Butte (n=44 trees) showed they were spatially clumped and restricted to 12.7 percent and 2.8 percent, respectively, of the study areas. Roost trees, primarily ponderosa pine (Pinus ponderosa), averaged 81.1 ± 1.3 cm dbh (mean ± 1 S.E.) compared to non-roost trees (>35 cm dbh) that averaged 52.2 ± 1.0 cm dbh. Roost trees were generally taller and more open-structured than non-roost trees. All four study sites had adequate numbers of mid-sized trees (10 to 50 cm dbh) to replace the current stock of older, larger roost trees. However, seedling and small trees (<10 cm dbh) in the roost areas were spatially clumped and few, suggesting that maintaining a continuous population of roost trees may be a problem in the distant future. Long-term studies of changing winter roost habitat and eagle use are essential to protect the bald eagle in the northwestern US.

A method for constructing time series of dune mobility by optical cross correlation, with application to the Bodélé Depression of northern Chad (Invited)

NASA Astrophysics Data System (ADS)

Vermeesch, P.

2010-12-01

Saharan dust fertilizes the Atlantic Ocean and increases the albedo of the Earth. A better understanding of changes in dust production is therefore important for climate models. The Bodélé Depression of northern Chad is the single most important point source of dust on the planet. This is due to a unique combination of strong winds and the presence of easily transported diatomite, which was deposited by Palaeolake Megachad during the early Holocene. Field studies have indicated that this diatomite is ejected into the atmosphere by eddies and turbulences associated with the horns of large barchan dunes. Most dust production takes place during storms, and this is also when the dunes move the most. Because of this common mechanism, changes in dust production should be correlated with changes in historical dune migration rates. To test this hypothesis, a method was developed to reconstruct a time series of dune mobility by sequential analysis of archival Landsat, SPOT, ASTER, and declassified US spy imagery. The method uses the COSI-Corr change detection algorithm [1,2] and three filters to select the best dune pixels. First, the correlations with the highest signal-to-noise ratios are selected. Second, a 'consistency' filter is used to select those displacements of which the forward and backward correlations cancel each other out. Third, a directional filter is applied to select only those pixels moving in a constant direction, in order to separate the dunes from the interdunes. Plotting the forward looking displacements (e.g., from 1987 to 1990) against the backward looking displacements (e.g., from 1987 to 1984) enables a direct comparison of the relative displacements for exactly the same pixel locations. Finally, all these correlations are tied together to form a single time series. [1] Leprince, S., Berthier, E., Ayoub, F., Delacourt, C. and Avouac, J. P., 2008. Monitoring Earth Surface Dynamics with Optical Imagery, EOS, Transactions, American Geophysical Union, 89, 1-2. [2] Vermeesch, P. and Drake, N., 2008. Remotely sensed dune celerity and sand flux measurements of the world's fastest barchans (Bodélé, Chad): Geophysical Research Letters, 35, L24404 'good dune pixels' in the central Bodélé Depression, tracked from 1984 until 2008.

A topo-graph model for indistinct target boundary definition from anatomical images.

PubMed

Cui, Hui; Wang, Xiuying; Zhou, Jianlong; Gong, Guanzhong; Eberl, Stefan; Yin, Yong; Wang, Lisheng; Feng, Dagan; Fulham, Michael

2018-06-01

It can be challenging to delineate the target object in anatomical imaging when the object boundaries are difficult to discern due to the low contrast or overlapping intensity distributions from adjacent tissues. We propose a topo-graph model to address this issue. The first step is to extract a topographic representation that reflects multiple levels of topographic information in an input image. We then define two types of node connections - nesting branches (NBs) and geodesic edges (GEs). NBs connect nodes corresponding to initial topographic regions and GEs link the nodes at a detailed level. The weights for NBs are defined to measure the similarity of regional appearance, and weights for GEs are defined with geodesic and local constraints. NBs contribute to the separation of topographic regions and the GEs assist the delineation of uncertain boundaries. Final segmentation is achieved by calculating the relevance of the unlabeled nodes to the labels by the optimization of a graph-based energy function. We test our model on 47 low contrast CT studies of patients with non-small cell lung cancer (NSCLC), 10 contrast-enhanced CT liver cases and 50 breast and abdominal ultrasound images. The validation criteria are the Dice's similarity coefficient and the Hausdorff distance. Student's t-test show that our model outperformed the graph models with pixel-only, pixel and regional, neighboring and radial connections (p-values <0.05). Our findings show that the topographic representation and topo-graph model provides improved delineation and separation of objects from adjacent tissues compared to the tested models. Copyright © 2018 Elsevier B.V. All rights reserved.

Flow downstream of the heliospheric terminal shock: Magnetic field line topology and solar cycle imprint

NASA Technical Reports Server (NTRS)

Nerney, Steven; Suess, S. T.; Schmahl, E. J.

1995-01-01

The topology of the magnetic field in the heliosheath is illustrated using plots of the field lines. It is shown that the Archimedean spiral inside the terminal shock is rotated back in the heliosheath into nested spirals that are advected in the direction of the interstellar wind. The 22-year solar magnetic cycle is imprinted onto these field lines in the form of unipolar magnetic envelopes surrounded by volumes of strongly mixed polarity. Each envelope is defined by the changing tilt of the heliospheric current sheet, which is in turn defined by the boundary of unipolar high-latitude regions on the Sun that shrink to the pole at solar maximum and expand to the equator at solar minimum. The detailed shape of the envelopes is regulated by the solar wind velocity structure in the heliosheath.

Aerial tracking of radio-marked white-tailed tropicbirds over the Caribbean Sea

USGS Publications Warehouse

Fuller, M.R.; Obrecht, H.H.; Pennycuick, C.J.; Schaffner, F.C.; Amlaner, Charles J.

1989-01-01

We radio-marked nesting white-tailed tropicbirds at Culebra National Wildlife Refuge, Puerto Rico, and tracked them from a Cessna 182 during flights over the open sea. Locations of the birds were determined using standard aerial telemetry techniques for side-facing Yagi antennas. We used strut-mounted, 4-element Yagi antennas connected to a switchbox and scanning receiver. By recording bearing and distance from at least 1 of 3 aeronautical navigation beacons, the position of the aircraft and the bird could be estimated with an error of about 2 km. On several occasions we plotted the general heading of a bird and then relocated and tracked the same bird on the following day. Our method of aerial tracking and navigation was useful for tracking birds over the sea to at least 116 km from the breeding colony

Mapping site index and volume increment from forest inventory, Landsat, and ecological variables in Tahoe National Forest, California, USA

USGS Publications Warehouse

Huang, Shengli; Ramirez, Carlos; Conway, Scott; Kennedy, Kama; Kohler, Tanya; Liu, Jinxun

2016-01-01

High-resolution site index (SI) and mean annual increment (MAI) maps are desired for local forest management. We integrated field inventory, Landsat, and ecological variables to produce 30 m SI and MAI maps for the Tahoe National Forest (TNF) where different tree species coexist. We converted species-specific SI using adjustment factors. Then, the SI map was produced by (i) intensifying plots to expand the training sets to more climatic, topographic, soil, and forest reflective classes, (ii) using results from a stepwise regression to enable a weighted imputation that minimized the effects of outlier plots within classes, and (iii) local interpolation and strata median filling to assign values to pixels without direct imputations. The SI (reference age is 50 years) map had an R2 of 0.7637, a root-mean-square error (RMSE) of 3.60, and a mean absolute error (MAE) of 3.07 m. The MAI map was similarly produced with an R2 of 0.6882, an RMSE of 1.73, and a MAE of 1.20 m3·ha−1·year−1. Spatial patterns and trends of SI and MAI were analyzed to be related to elevation, aspect, slope, soil productivity, and forest type. The 30 m SI and MAI maps can be used to support decisions on fire, plantation, biodiversity, and carbon.

Computational Short-cutting the Big Data Classification Bottleneck: Using the MODIS Land Cover Product to Derive a Consistent 30 m Landsat Land Cover Product of the Conterminous United States

NASA Astrophysics Data System (ADS)

Zhang, H.; Roy, D. P.

2016-12-01

Classification is a fundamental process in remote sensing used to relate pixel values to land cover classes present on the surface. The state of the practice for large area land cover classification is to classify satellite time series metrics with a supervised (i.e., training data dependent) non-parametric classifier. Classification accuracy generally increases with training set size. However, training data collection is expensive and the optimal training distribution over large areas is unknown. The MODIS 500 m land cover product is available globally on an annual basis and so provides a potentially very large source of land cover training data. A novel methodology to classify large volume Landsat data using high quality training data derived automatically from the MODIS land cover product is demonstrated for all of the Conterminous United States (CONUS). The known misclassification accuracy of the MODIS land cover product and the scale difference between the 500 m MODIS and 30 m Landsat data are accommodated for by a novel MODIS product filtering, Landsat pixel selection, and iterative training approach to balance the proportion of local and CONUS training data used. Three years of global Web-enabled Landsat data (WELD) data for all of the CONUS are classified using a random forest classifier and the results assessed using random forest `out-of-bag' training samples. The global WELD data are corrected to surface nadir BRDF-Adjusted Reflectance and are defined in 158 × 158 km tiles in the same projection and nested to the MODIS land cover products. This reduces the need to pre-process the considerable Landsat data volume (more than 14,000 Landsat 5 and 7 scenes per year over the CONUS covering 11,000 million 30 m pixels). The methodology is implemented in a parallel manner on WELD tile by tile basis but provides a wall-to-wall seamless 30 m land cover product. Detailed tile and CONUS results are presented and the potential for global production using the recently available global WELD products are discussed.

Spatial structure and nest demography reveal the influence of competition, parasitism and habitat quality on slavemaking ants and their hosts

PubMed Central

2011-01-01

Background Natural communities are structured by intra-guild competition, predation or parasitism and the abiotic environment. We studied the relative importance of these factors in two host-social parasite ecosystems in three ant communities in Europe (Bavaria) and North America (New York, West Virginia). We tested how these factors affect colony demography, life-history and the spatial pattern of colonies, using a large sample size of more than 1000 colonies. The strength of competition was measured by the distance to the nearest competitor. Distance to the closest social parasite colony was used as a measure of parasitism risk. Nest sites (i.e., sticks or acorns) are limited in these forest ecosystems and we therefore included nest site quality as an abiotic factor in the analysis. In contrast to previous studies based on local densities, we focus here on the positioning and spatial patterns and we use models to compare our predictions to random expectations. Results Colony demography was universally affected by the size of the nest site with larger and more productive colonies residing in larger nest sites of higher quality. Distance to the nearest competitor negatively influenced host demography and brood production in the Bavarian community, pointing to an important role of competition, while social parasitism was less influential in this community. The New York community was characterized by the highest habitat variability, and productive colonies were clustered in sites of higher quality. Colonies were clumped on finer spatial scales, when we considered only the nearest neighbors, but more regularly distributed on coarser scales. The analysis of spatial positioning within plots often produced different results compared to those based on colony densities. For example, while host and slavemaker densities are often positively correlated, slavemakers do not nest closer to potential host colonies than expected by random. Conclusions The three communities are differently affected by biotic and abiotic factors. Some of the differences can be attributed to habitat differences and some to differences between the two slavemaking-host ecosystems. The strong effect of competition in the Bavarian community points to the scarcity of resources in this uniform habitat compared to the other more diverse sites. The decrease in colony aggregation with scale indicates fine-scale resource hotspots: colonies are locally aggregated in small groups. Our study demonstrates that species relationships vary across scales and spatial patterns can provide important insights into species interactions. These results could not have been obtained with analyses based on local densities alone. Previous studies focused on social parasitism and its effect on host colonies. The broader approach taken here, considering several possible factors affecting colony demography and not testing each one in isolation, shows that competition and environmental variability can have a similar strong impact on demography and life-history of hosts. We conclude that the effects of parasites or predators should be studied in parallel to other ecological influences. PMID:21443778

Spatial structure and nest demography reveal the influence of competition, parasitism and habitat quality on slavemaking ants and their hosts.

PubMed

Scharf, Inon; Fischer-Blass, Birgit; Foitzik, Susanne

2011-03-28

Natural communities are structured by intra-guild competition, predation or parasitism and the abiotic environment. We studied the relative importance of these factors in two host-social parasite ecosystems in three ant communities in Europe (Bavaria) and North America (New York, West Virginia). We tested how these factors affect colony demography, life-history and the spatial pattern of colonies, using a large sample size of more than 1000 colonies. The strength of competition was measured by the distance to the nearest competitor. Distance to the closest social parasite colony was used as a measure of parasitism risk. Nest sites (i.e., sticks or acorns) are limited in these forest ecosystems and we therefore included nest site quality as an abiotic factor in the analysis. In contrast to previous studies based on local densities, we focus here on the positioning and spatial patterns and we use models to compare our predictions to random expectations. Colony demography was universally affected by the size of the nest site with larger and more productive colonies residing in larger nest sites of higher quality. Distance to the nearest competitor negatively influenced host demography and brood production in the Bavarian community, pointing to an important role of competition, while social parasitism was less influential in this community. The New York community was characterized by the highest habitat variability, and productive colonies were clustered in sites of higher quality. Colonies were clumped on finer spatial scales, when we considered only the nearest neighbors, but more regularly distributed on coarser scales. The analysis of spatial positioning within plots often produced different results compared to those based on colony densities. For example, while host and slavemaker densities are often positively correlated, slavemakers do not nest closer to potential host colonies than expected by random. The three communities are differently affected by biotic and abiotic factors. Some of the differences can be attributed to habitat differences and some to differences between the two slavemaking-host ecosystems. The strong effect of competition in the Bavarian community points to the scarcity of resources in this uniform habitat compared to the other more diverse sites. The decrease in colony aggregation with scale indicates fine-scale resource hotspots: colonies are locally aggregated in small groups. Our study demonstrates that species relationships vary across scales and spatial patterns can provide important insights into species interactions. These results could not have been obtained with analyses based on local densities alone. Previous studies focused on social parasitism and its effect on host colonies. The broader approach taken here, considering several possible factors affecting colony demography and not testing each one in isolation, shows that competition and environmental variability can have a similar strong impact on demography and life-history of hosts. We conclude that the effects of parasites or predators should be studied in parallel to other ecological influences.

Developing a generalized allometric equation for aboveground biomass estimation

NASA Astrophysics Data System (ADS)

Xu, Q.; Balamuta, J. J.; Greenberg, J. A.; Li, B.; Man, A.; Xu, Z.

2015-12-01

A key potential uncertainty in estimating carbon stocks across multiple scales stems from the use of empirically calibrated allometric equations, which estimate aboveground biomass (AGB) from plant characteristics such as diameter at breast height (DBH) and/or height (H). The equations themselves contain significant and, at times, poorly characterized errors. Species-specific equations may be missing. Plant responses to their local biophysical environment may lead to spatially varying allometric relationships. The structural predictor may be difficult or impossible to measure accurately, particularly when derived from remote sensing data. All of these issues may lead to significant and spatially varying uncertainties in the estimation of AGB that are unexplored in the literature. We sought to quantify the errors in predicting AGB at the tree and plot level for vegetation plots in California. To accomplish this, we derived a generalized allometric equation (GAE) which we used to model the AGB on a full set of tree information such as DBH, H, taxonomy, and biophysical environment. The GAE was derived using published allometric equations in the GlobAllomeTree database. The equations were sparse in details about the error since authors provide the coefficient of determination (R2) and the sample size. A more realistic simulation of tree AGB should also contain the noise that was not captured by the allometric equation. We derived an empirically corrected variance estimate for the amount of noise to represent the errors in the real biomass. Also, we accounted for the hierarchical relationship between different species by treating each taxonomic level as a covariate nested within a higher taxonomic level (e.g. species < genus). This approach provides estimation under incomplete tree information (e.g. missing species) or blurred information (e.g. conjecture of species), plus the biophysical environment. The GAE allowed us to quantify contribution of each different covariate in estimating the AGB of trees. Lastly, we applied the GAE to an existing vegetation plot database - Forest Inventory and Analysis database - to derive per-tree and per-plot AGB estimations, their errors, and how much the error could be contributed to the original equations, the plant's taxonomy, and their biophysical environment.

A system for verifying models and classification maps by extraction of information from a variety of data sources

NASA Technical Reports Server (NTRS)

Norikane, L.; Freeman, A.; Way, J.; Okonek, S.; Casey, R.

1992-01-01

Recent updates to a geographical information system (GIS) called VICAR (Video Image Communication and Retrieval)/IBIS are described. The system is designed to handle data from many different formats (vector, raster, tabular) and many different sources (models, radar images, ground truth surveys, optical images). All the data are referenced to a single georeference plane, and average or typical values for parameters defined within a polygonal region are stored in a tabular file, called an info file. The info file format allows tracking of data in time, maintenance of links between component data sets and the georeference image, conversion of pixel values to `actual' values (e.g., radar cross-section, luminance, temperature), graph plotting, data manipulation, generation of training vectors for classification algorithms, and comparison between actual measurements and model predictions (with ground truth data as input).

A Ground Truthing Method for AVIRIS Overflights Using Canopy Absorption Spectra

NASA Technical Reports Server (NTRS)

Gamon, John A.; Serrano, Lydia; Roberts, Dar A.; Ustin, Susan L.

1996-01-01

Remote sensing for ecological field studies requires ground truthing for accurate interpretation of remote imagery. However, traditional vegetation sampling methods are time consuming and hard to relate to the scale of an AVIRIS scene. The large errors associated with manual field sampling, the contrasting formats of remote and ground data, and problems with coregistration of field sites with AVIRIS pixels can lead to difficulties in interpreting AVIRIS data. As part of a larger study of fire risk in the Santa Monica Mountains of southern California, we explored a ground-based optical method of sampling vegetation using spectrometers mounted both above and below vegetation canopies. The goal was to use optical methods to provide a rapid, consistent, and objective means of "ground truthing" that could be related both to AVIRIS imagery and to conventional ground sampling (e.g., plot harvests and pigment assays).

Analysis of data acquired by Shuttle Imaging Radar SIR-A and Landsat Thematic Mapper over Baldwin County, Alabama

NASA Technical Reports Server (NTRS)

Wu, S.-T.

1985-01-01

Seasonally compatible data collected by SIR-A and by Landsat 4 TM over the lower coastal plain in Alabama were coregistered, forming a SIR-A/TM multichannel data set with 30 m x 30 m pixel size. Spectral signature plots and histogram analysis of the data were used to observe data characteristics. Radar returns from pine forest classes correlated highly with the tree ages, suggesting the potential utility of microwave remote sensing for forest biomass estimation. As compared with the TM-only data set, the use of SIR-A/TM data set improved classification accuracy of the seven land cover types studied. In addition, the SIR-A/TM classified data support previous finding by Engheta and Elachi (1982) that microwave data appear to be correlated with differing bottomland hardwood forest vegetation as associated with varying water regimens (i.e., wet versus dry).

Investigating diffusion with technology

NASA Astrophysics Data System (ADS)

Miller, Jon S.; Windelborn, Augden F.

2013-07-01

The activities described here allow students to explore the concept of diffusion with the use of common equipment such as computers, webcams and analysis software. The procedure includes taking a series of digital pictures of a container of water with a webcam as a dye slowly diffuses. At known time points, measurements of the pixel densities (darkness) of the digital pictures are recorded and then plotted on a graph. The resulting graph of darkness versus time allows students to see the results of diffusion of the dye over time. Through modification of the basic lesson plan, students are able to investigate the influence of a variety of variables on diffusion. Furthermore, students are able to expand the boundaries of their thinking by formulating hypotheses and testing their hypotheses through experimentation. As a result, students acquire a relevant science experience through taking measurements, organizing data into tables, analysing data and drawing conclusions.

Low-Energy Defibrillation Failure Correction is Possible Through Nonlinear Analysis of Spatiotemporal Arrhythmia Data

NASA Astrophysics Data System (ADS)

Simonotto, Jennifer; Furman, Michael; Beaver, Thomas; Spano, Mark; Kavanagh, Katherine; Iden, Jason; Hu, Gang; Ditto, William

2004-03-01

Explanted Porcine hearts were Langendorff-perfused, administered a voltage-sensitive fluorescent dye (Di-4-ANEPPS) and illuminated with a ND:Yag laser (532 nm); the change in fluorescence resulting from electrical activity on the heart surface was recorded with an 80 x 80 pixel CCD camera at 1000 frames per second. The heart was put into fibrillation with rapid ventricular pacing and shocks were administered close to the defibrillation threshold. Defibrillation failure data was analyzed using synchronization, space-time volume plots and recurrence quantification. Preliminary spatiotemporal synchronization results reveal a short window of time ( 1 second) after defibrillation failure in which the disordered electrical activity becomes ordered; this ordered period occurs 4-5 seconds after the defibrillation shock. Recurrence analysis of a single time series confirmed these results, thus opening the avenue for dynamic defibrillators that can detect an optimal window for cardioversion.

A gradient model of vegetation and climate utilizing NOAA satellite imagery. Phase 1: Texas transect

NASA Technical Reports Server (NTRS)

Greegor, D. H.; Norwine, J.

1981-01-01

A new experimental climatological model/variable termed the sponge, a measure of moisture availability based on daily temperature maxima and minima and precipitation, is tested for potential biogeographic, ecological, and agro-climatological applications. Results, depicted in tabular and graphic from, suggest that, as a generalized climatic index, sponge's simplicity and sensitivity make particularly appropriate for trans-regional biogeographic studies (e.g., large-area and global vegetation monitoring). The feasibility of utilizing NOAA/AVHRR data for vegetation classification was investigated and a vegetation gradient model that utilizes sponge, and AVHRR pixel data (channels 1 and 2) were obtained for 12 locations. The normalized difference values for the AVHRR data when plotted against vegetation characteristics (biomass, net productivity, leaf area) and sponge values suggest that a multivariate gradient model incorporating AVHRR and sponge data may indeed be useful in global vegetation stratification and monitoring.

A gradient model of vegetation and climate utilizing NOAA satellite imagery. Phase 1: Texas transect

NASA Technical Reports Server (NTRS)

Greegor, D.; Norwine, J. (Principal Investigator)

1981-01-01

A climatological model/variable termed the sponge (a measure of moisture availability based on daily temperature maxima and minima, and precipitation) was tested for potential biogeograhic, ecological, and agro-climatological applications. Results, depicted in tabular and graphic form, suggest that, as generalized climatic index, sponge is particularly appropriate for large-area and global vegetation monitoring. The feasibility of utilizing NOAA/AVHRR data for vegetation classification was investigated and a vegetation gradient model that utilizes sponge and AVHRR data was initiated. Along an east-west Texas gradient, vegetation, sponge, and AVHRR pixel data (channels 1 and 2) were obtained for 12 locations. The normalized difference values for the AVHRR data when plotted against vegetation characteristics (biomass, net productivity, leaf area) and sponge values along the Texas gradient suggest that a multivariate gradient model incorporating AVHRR and sponge data may indeed be useful in global vegetation stratification and monitoring.

Stochastic resonance-enhanced laser-based particle detector.

PubMed

Dutta, A; Werner, C

2009-01-01

This paper presents a Laser-based particle detector whose response was enhanced by modulating the Laser diode with a white-noise generator. A Laser sheet was generated to cast a shadow of the object on a 200 dots per inch, 512 x 1 pixels linear sensor array. The Laser diode was modulated with a white-noise generator to achieve stochastic resonance. The white-noise generator essentially amplified the wide-bandwidth (several hundred MHz) noise produced by a reverse-biased zener diode operating in junction-breakdown mode. The gain in the amplifier in the white-noise generator was set such that the Receiver Operating Characteristics plot provided the best discriminability. A monofiber 40 AWG (approximately 80 microm) wire was detected with approximately 88% True Positive rate and approximately 19% False Positive rate in presence of white-noise modulation and with approximately 71% True Positive rate and approximately 15% False Positive rate in absence of white-noise modulation.

MODIS-derived EVI, NDVI and WDRVI time series to estimate phenological metrics in French deciduous forests

NASA Astrophysics Data System (ADS)

Testa, S.; Soudani, K.; Boschetti, L.; Borgogno Mondino, E.

2018-02-01

Monitoring forest phenology allows us to study the effects of climate change on vegetated land surfaces. Daily and composite time series (TS) of several vegetation indices (VIs) from MODerate resolution Imaging Spectroradiometer (MODIS) data have been widely used in scientific works for phenological studies since the beginning of the MODIS mission. The objective of this work was to use MODIS data to find the best VI/TS combination to estimate start-of-season (SOS) and end-of-season (EOS) dates across 50 temperate deciduous forests. Our research used as inputs 2001-2012 daily reflectance from MOD09GQ/MOD09GA products and 16-day composite VIs from the MOD13Q1 dataset. The 50 pixels centered on the 50 forest plots were extracted from the above-mentioned MODIS imagery; we then generated 5 different types of TS (1 daily from MOD09 and 4 composite from MOD13Q1) and used all of them to implement 6 VIs, obtaining 30 VI/TS combinations. SOS and EOS estimates were determined for each pixel/year and each VI/TS combination. SOS/EOS estimations were then validated against ground phenological observations. Results showed that, in our test areas, composite TS, if actual acquisition date is considered, performed mostly better than daily TS. EVI, WDRVI0.20 and NDVI were more suitable to SOS estimation, while WDRVI0.05 and EVI were more convenient in estimating early and advanced EOS, respectively.

Habitat classification modeling with incomplete data: Pushing the habitat envelope

USGS Publications Warehouse

Zarnetske, P.L.; Edwards, T.C.; Moisen, Gretchen G.

2007-01-01

Habitat classification models (HCMs) are invaluable tools for species conservation, land-use planning, reserve design, and metapopulation assessments, particularly at broad spatial scales. However, species occurrence data are often lacking and typically limited to presence points at broad scales. This lack of absence data precludes the use of many statistical techniques for HCMs. One option is to generate pseudo-absence points so that the many available statistical modeling tools can be used. Traditional techniques generate pseudoabsence points at random across broadly defined species ranges, often failing to include biological knowledge concerning the species-habitat relationship. We incorporated biological knowledge of the species-habitat relationship into pseudo-absence points by creating habitat envelopes that constrain the region from which points were randomly selected. We define a habitat envelope as an ecological representation of a species, or species feature's (e.g., nest) observed distribution (i.e., realized niche) based on a single attribute, or the spatial intersection of multiple attributes. We created HCMs for Northern Goshawk (Accipiter gentilis atricapillus) nest habitat during the breeding season across Utah forests with extant nest presence points and ecologically based pseudo-absence points using logistic regression. Predictor variables were derived from 30-m USDA Landfire and 250-m Forest Inventory and Analysis (FIA) map products. These habitat-envelope-based models were then compared to null envelope models which use traditional practices for generating pseudo-absences. Models were assessed for fit and predictive capability using metrics such as kappa, thresholdindependent receiver operating characteristic (ROC) plots, adjusted deviance (Dadj2), and cross-validation, and were also assessed for ecological relevance. For all cases, habitat envelope-based models outperformed null envelope models and were more ecologically relevant, suggesting that incorporating biological knowledge into pseudo-absence point generation is a powerful tool for species habitat assessments. Furthermore, given some a priori knowledge of the species-habitat relationship, ecologically based pseudo-absence points can be applied to any species, ecosystem, data resolution, and spatial extent. ?? 2007 by the Ecological Society of America.

Color deconvolution. Optimizing handling of 3D unitary optical density vectors with polar coordinates.

PubMed

Bigras, Gilbert

2012-06-01

Color deconvolution relies on determination of unitary optical density vectors (OD(3D)) derived from pure constituent stains initially defined as intensity vectors in RGB space. OD(3D) can be defined in polar coordinates (phi, theta, radius); always being equal to one, radius can be ignored. Easier handling of unitary optical density 2D vectors (OD(2D)) is shown. OD(2D) pure stains used in anatomical pathology were assessed as centroid values (phi, theta) with a measure of variance: inertia based on arc lengths between centroid value and sampled points. These variables were plotted on a stereographic projection plane. In order to assess pure stains OD(2D), different methods of sampling RGB pixels were tested and compared: (2) direct sampling of nuclei from preparations using (a) composite H&E and (b) hematoxylin only and (2) for any pure stain RGB image, different associated 8-bit masks (saturation, brightness and RGB average) were used for sampling and compared. Behaviors of phi, theta and inertia were obtained by moving threshold in 8-bit mask histograms. Phi and theta stability were tested against variable light intensity during image acquisition and by using 2 different image acquisition systems. The more saturated RGB pixels are, the more stable phi, theta and inertia values are obtained. Different commercial hematoxylins have distinct OD(2D) characteristics. UltraView DAB stain shows high inertia and is angularly closer to usual counterstains than ultraView Red stain, which also has a lower inertia. Superior accuracy is expected from the latter stain. Phi and theta OD(2D) values are sensitive to light intensity variation, to the used imaging system and to the used objectives. An ImageJ plugin was designed to plot and interactively modify OD(2D) values with instant update of color deconvolution allowing heuristic segmentation. Utilization of polar OD(2D) eases statistical characterization of OD(3D) vectors: conditions of optimal sampling were demonstrated and various factors influencing OD(2D) stability were explored. Stereographic projection plane allows intuitive visualization of OD(3D) vectors as well as heuristic vectorial modification. All findings are not restricted to anatomical pathology but can be applied to bright field microscopy and subtractive color applications in general.

Spatial pattern and ecological process in the coffee agroforestry system.

PubMed

Perfecto, Ivette; Vandermeer, John

2008-04-01

The coffee agroforestry system provides an ideal platform for the study of spatial ecology. The uniform pattern of the coffee plants and shade trees allows for the study of pattern generation through intrinsic biological forces rather than extrinsic habitat patchiness. Detailed studies, focusing on a key mutualism between an ant (Azteca instabilis) and a scale insect (Coccus viridis), conducted in a 45-ha plot in a coffee agroforestry system have provided insights into (1) the quantitative evaluation of spatial pattern of the scale insect Coccus viridis on coffee bushes, (2) the mechanisms for the generation of patterns through the combination of local satellite ant nest formation and regional control from natural enemies, and (3) the consequences of the spatial pattern for the stability of predator-prey (host-parasitoid) systems, for a key coccinelid beetle preying on the scale insects and a phorid fly parasitoid parasitizing the ant.

Use of passive UAS imaging to measure biophysical parameters in a southern Rocky Mountain subalpine forest

NASA Astrophysics Data System (ADS)

Caldwell, M. K.; Sloan, J.; Mladinich, C. S.; Wessman, C. A.

2013-12-01

Unmanned Aerial Systems (UAS) can provide detailed, fine spatial resolution imagery for ecological uses not otherwise obtainable through standard methods. The use of UAS imagery for ecology is a rapidly -evolving field, where the study of forest landscape ecology can be augmented using UAS imagery to scale and validate biophysical data from field measurements to spaceborne observations. High resolution imagery provided by UAS (30 cm2 pixels) offers detailed canopy cover and forest structure data in a time efficient and inexpensive manner. Using a GoPro Hero2 (2 mm focal length) camera mounted in the nose cone of a Raven unmanned system, we collected aerial and thermal data monthly during the summer 2013, over two subalpine forests in the Southern Rocky Mountains in Colorado. These forests are dominated by lodgepole pine (Pinus ponderosae) and have experienced insect-driven (primarily mountain pine beetle; MPB, Dendroctonus ponderosae) mortality. Objectives of this study include observations of forest health variables such as canopy water content (CWC) from thermal imagery and leaf area index (LAI), biomass and forest productivity from the Normalized Difference Vegetation Index (NDVI) from UAS imagery. Observations were, validated with ground measurements. Images were processed using a combination of AgiSoft Photoscan professional software and ENVI remote imaging software. We utilized the software Leaf Area Index Calculator (LAIC) developed by Córcoles et al. (2013) for calculating LAI from digital images and modified to conform to leaf area of needle-leaf trees as in Chen and Cihlar (1996) . LAIC uses a K-means cluster analysis to decipher the RGB levels for each pixel and distinguish between green aboveground vegetation and other materials, and project leaf area per unit of ground surface area (i.e. half total needle surface area per unit area). Preliminary LAIC UAS data shows summer average LAI was 3.8 in the most dense forest stands and 2.95 in less dense stands. These data correspond to 4.8 and 2.2 respectively from in situ Licor LAI 2200 measurements (Wilcoxon signed rank p value of 0.25, indicating there is no significant difference between LAIC and field measurements). Imagery over plots indicates about 12% canopy cover from standing dead vegetation within plots, which corresponds to about a 10% estimate of standing dead measured in the field. The next steps for analysis include calculating NDVI and CWC for plot-level vegetation, and scaling to the surrounding forested landscape. These high resolution estimates from UAS imagery will provide forest stand-to- landscape level biophysical data for forest health assessments, management, drought and disturbance monitoring and climate change modeling. Chen, J. M., and J. Cihlar. 1996. Retrieving LAI of boreal conifer forests using Landsat TM images. RSE 55:153-162. Córcoles, J., J. Ortega, D. Hernández, and M. Moreno. 2013. Use of digital photography from unmanned aerial vehicles for estimation of LAI in onion. EJoA. 45:96-104.

Video Image Tracking Engine

NASA Technical Reports Server (NTRS)

Howard, Richard T. (Inventor); Bryan, ThomasC. (Inventor); Book, Michael L. (Inventor)

2004-01-01

A method and system for processing an image including capturing an image and storing the image as image pixel data. Each image pixel datum is stored in a respective memory location having a corresponding address. Threshold pixel data is selected from the image pixel data and linear spot segments are identified from the threshold pixel data selected.. Ihe positions of only a first pixel and a last pixel for each linear segment are saved. Movement of one or more objects are tracked by comparing the positions of fust and last pixels of a linear segment present in the captured image with respective first and last pixel positions in subsequent captured images. Alternatively, additional data for each linear data segment is saved such as sum of pixels and the weighted sum of pixels i.e., each threshold pixel value is multiplied by that pixel's x-location).

An interactive survey panel regarding the effects of mice (Microtus spec.) on a young ecosystem

NASA Astrophysics Data System (ADS)

Zaplata, Markus; Maurer, Thomas; Boldt-Burisch, Katja; Schaaf, Wolfgang; Hinz, Christoph

2015-04-01

Apparent disturbance caused by soil megafauna took place for the very first time in 2014, after nine years of spontaneous vegetative succession of the constructed watershed Chicken Creek catchment (6 ha). This watershed was designed to investigate the initial phase of soil and ecosystem development under natural conditions including the detailed study of hydrologic processes and water-substrate-plant-atmosphere interactions. In autumn 2014, we recorded the primarily common vole (Microtus arvalis Pallas) activities (calamity), which altered the microtopography of the substrate surface: We counted mouse holes and diggings (for storage organs) at the same spatial units (permanent plots, >100 # of 5 m × 5 m) where we monitor the vegetation since the onset of the catchment. We are hence capable of analysing the effect of abundant vegetarian mice and biogenic macropores, e.g. on the occurrence and performance of the more than 150 vascular plant species present by comparing the respective coverage in 2013 (the pre-mice year) versus 2014, with or without accounting for the confounding effect of succession. Additionally elaborated insight on the 3-D architecture of the mice underground corridors and the nesting places (in situ) enables to extrapolate mass and volume of the moved substrate and the number of the nests of mice for the whole catchment. We report these results, anticipating a return service: Here, we ask for your expectation regarding the significance of the mice-made disturbance on the vegetation of the young ecosystem.

Predicting rare plant occurrence in Great Smoky Mountains National Park, USA

USGS Publications Warehouse

Boetsch, J.R.; van Manen, Frank T.; Clark, Joseph D.

2003-01-01

We investigated the applicability of biometric habitat modeling to rare plant inventory and conservation by developing and field testing a geographically explicit model for Cardamine clematitis Shuttleworth ex A. Gray (mountain bittercress), an endemic plant of the southern Blue Ridge Mountains, USA. For each of 187 confirmed coordinates for C. clematitis in Great Smoky Mountains National Park, 13 habitat variables were measured with a geographic information system. These data were used to calculate Mahalanobis distances for each 30-m x 30-m pixel within the study area; small values of Mahalanobis distance represented site conditions similar to those of known locations of C. clematitis, whereas larger distance values represented dissimilar conditions. Following model development, we tested model performance by sampling 120 randomly distributed plots for C. clematitis presence. Logistic regression showed that Mahalanobis distance values were strongly related to C. clematitis occurrence (P = 0.039). Overall, 75% of all known occurrences of C. clematitis had associated Mahalanobis distance values below 17.7, and 95% of all occurrences were below 33.8; the median Mahalanobis distance value for the study area as a whole was 40.0. A habitat suitability cutoff value was defined which identified roughly 23,640 ha (19.5% of the study area) as suitable habitat. Although the model successfully predicted species absence in test plots with high Mahalanobis distance values, many sites with low values did not contain C. clematitis. Only 16.2% of test plots below the habitat suitability cutoff contained C. clematitis. The absence of C. clematitis from sites with low Mahalanobis distance values (low specificity) is not necessarily indicative of a poor model; metapopulation processes (e.g., recolonizations, local extinctions) have been shown to play a major role in presence or absence of many plant species. That may be partially the case with our model as evidenced by a relationship between C. clematitis presence and habitat patch size.

Spatial clustering of pixels of a multispectral image

DOEpatents

Conger, James Lynn

2014-08-19

A method and system for clustering the pixels of a multispectral image is provided. A clustering system computes a maximum spectral similarity score for each pixel that indicates the similarity between that pixel and the most similar neighboring. To determine the maximum similarity score for a pixel, the clustering system generates a similarity score between that pixel and each of its neighboring pixels and then selects the similarity score that represents the highest similarity as the maximum similarity score. The clustering system may apply a filtering criterion based on the maximum similarity score so that pixels with similarity scores below a minimum threshold are not clustered. The clustering system changes the current pixel values of the pixels in a cluster based on an averaging of the original pixel values of the pixels in the cluster.

Reflective photovoltaics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lentine, Anthony L.; Nielson, Gregory N.; Cruz-Campa, Jose Luis

A photovoltaic module includes colorized reflective photovoltaic cells that act as pixels. The colorized reflective photovoltaic cells are arranged so that reflections from the photovoltaic cells or pixels visually combine into an image on the photovoltaic module. The colorized photovoltaic cell or pixel is composed of a set of 100 to 256 base color sub-pixel reflective segments or sub-pixels. The color of each pixel is determined by the combination of base color sub-pixels forming the pixel. As a result, each pixel can have a wide variety of colors using a set of base colors, which are created, from sub-pixel reflectivemore » segments having standard film thicknesses.« less

Comparison of monthly nighttime cloud fraction products from MODIS and AIRS and ground-based camera over Manila Observatory (14.64N, 121.07E)

NASA Astrophysics Data System (ADS)

Gacal, G. F. B.; Lagrosas, N.

2017-12-01

Cloud detection nowadays is primarily achieved by the utilization of various sensors aboard satellites. These include MODIS Aqua, MODIS Terra, and AIRS with products that include nighttime cloud fraction. Ground-based instruments are, however, only secondary to these satellites when it comes to cloud detection. Nonetheless, these ground-based instruments (e.g., LIDARs, ceilometers, and sky-cameras) offer significant datasets about a particular region's cloud cover values. For nighttime operations of cloud detection instruments, satellite-based instruments are more reliably and prominently used than ground-based ones. Therefore if a ground-based instrument for nighttime operations is operated, it ought to produce reliable scientific datasets. The objective of this study is to do a comparison between the results of a nighttime ground-based instrument (sky-camera) and that of MODIS Aqua and MODIS Terra. A Canon Powershot A2300 is placed ontop of Manila Observatory (14.64N, 121.07E) and is configured to take images of the night sky at 5min intervals. To detect pixels with clouds, the pictures are converted to grayscale format. Thresholding technique is used to screen pixels with cloud and pixels without clouds. If the pixel value is greater than 17, it is considered as a cloud; otherwise, a noncloud (Gacal et al., 2016). This algorithm is applied to the data gathered from Oct 2015 to Oct 2016. A scatter plot between satellite cloud fraction in the area covering the area 14.2877N, 120.9869E, 14.7711N and 121.4539E and ground cloud cover is graphed to find the monthly correlation. During wet season (June - November), the satellite nighttime cloud fraction vs ground measured cloud cover produce an acceptable R2 (Aqua= 0.74, Terra= 0.71, AIRS= 0.76). However, during dry season, poor R2 values are obtained (AIRS= 0.39, Aqua & Terra = 0.01). The high correlation during wet season can be attributed to a high probability that the camera and satellite see the same clouds. However during dry season, the satellite sees high altitude clouds and the camera can not detect these clouds from the ground as it relies on city lights reflected from low level clouds. With this acknowledged disparity, the ground-based camera has the advantage of detecting haze and thin clouds near the ground that are hardly or not detected by the satellites.

Influence of the hypogaeic army ant Dorylus (Dichthadia) laevigatus on tropical arthropod communities.

PubMed

Berghoff, Stefanie M; Maschwitz, Ulrich; Linsenmair, K Eduard

2003-03-01

The majority of army ant species forage hypogaeically. Due to the difficulties in observing these ants, their potential influence on hypogaeic and epigaeic arthropod communities has not yet been investigated. As the first hypogaeically foraging army ant studied in detail, we attracted Dorylus laevigatus to areas monitored for their arthropod diversity. Here, for the first time, the same sites were sampled before and after an army ant raid. Furthermore, interactions between D. laevigatus and the five most common ground-nesting ant species were noted and their life-history traits compared, allowing first inferences on possible mechanisms of their coexistence. The occurrence of D. laevigatus within a study plot had no evident effect on the number of arthropod taxa or individuals collected with epigaeic and hypogaeic pitfall traps. Likewise, juvenile arthropods, which are less mobile and thus are potentially easier prey for D. laevigatus, showed no differences in their collected numbers before and after the army ant had visited a plot. However, significantly fewer ant species were collected with hypogaeic traps after D. laevigatus had been within the study plots, indicating a possible predation of D. laevigatus especially on two Pseudolasius and one Pheidole species. The five most common ground-foraging ant species demonstrated their ability to avoid, kill, and even prey on the army ant. The reaction of Lophomyrmex bedoti towards D. laevigatus indicated the former to be a potential prey species, while Pachycondyla sp. 2 showed signs of "enemy specification." Odontoponera diversus and O. transversa actively preyed on D. laevigatus, while Pheidologeton affinis fought with D. laevigatus over resources. All ant species could co-occur with D. laevigatus at palm oil baits. Adding to the differences detected in previous studies between D. laevigatus and epigaeically foraging army ant species, the occurrence of this hypogaeic army ant seems to have less devastating effects on arthropod community compositions than those of epigaeically mass raiding species.

Community turnover of wood-inhabiting fungi across hierarchical spatial scales.

PubMed

Abrego, Nerea; García-Baquero, Gonzalo; Halme, Panu; Ovaskainen, Otso; Salcedo, Isabel

2014-01-01

For efficient use of conservation resources it is important to determine how species diversity changes across spatial scales. In many poorly known species groups little is known about at which spatial scales the conservation efforts should be focused. Here we examined how the community turnover of wood-inhabiting fungi is realised at three hierarchical levels, and how much of community variation is explained by variation in resource composition and spatial proximity. The hierarchical study design consisted of management type (fixed factor), forest site (random factor, nested within management type) and study plots (randomly placed plots within each study site). To examine how species richness varied across the three hierarchical scales, randomized species accumulation curves and additive partitioning of species richness were applied. To analyse variation in wood-inhabiting species and dead wood composition at each scale, linear and Permanova modelling approaches were used. Wood-inhabiting fungal communities were dominated by rare and infrequent species. The similarity of fungal communities was higher within sites and within management categories than among sites or between the two management categories, and it decreased with increasing distance among the sampling plots and with decreasing similarity of dead wood resources. However, only a small part of community variation could be explained by these factors. The species present in managed forests were in a large extent a subset of those species present in natural forests. Our results suggest that in particular the protection of rare species requires a large total area. As managed forests have only little additional value complementing the diversity of natural forests, the conservation of natural forests is the key to ecologically effective conservation. As the dissimilarity of fungal communities increases with distance, the conserved natural forest sites should be broadly distributed in space, yet the individual conserved areas should be large enough to ensure local persistence.

Community Turnover of Wood-Inhabiting Fungi across Hierarchical Spatial Scales

PubMed Central

Abrego, Nerea; García-Baquero, Gonzalo; Halme, Panu; Ovaskainen, Otso; Salcedo, Isabel

2014-01-01

For efficient use of conservation resources it is important to determine how species diversity changes across spatial scales. In many poorly known species groups little is known about at which spatial scales the conservation efforts should be focused. Here we examined how the community turnover of wood-inhabiting fungi is realised at three hierarchical levels, and how much of community variation is explained by variation in resource composition and spatial proximity. The hierarchical study design consisted of management type (fixed factor), forest site (random factor, nested within management type) and study plots (randomly placed plots within each study site). To examine how species richness varied across the three hierarchical scales, randomized species accumulation curves and additive partitioning of species richness were applied. To analyse variation in wood-inhabiting species and dead wood composition at each scale, linear and Permanova modelling approaches were used. Wood-inhabiting fungal communities were dominated by rare and infrequent species. The similarity of fungal communities was higher within sites and within management categories than among sites or between the two management categories, and it decreased with increasing distance among the sampling plots and with decreasing similarity of dead wood resources. However, only a small part of community variation could be explained by these factors. The species present in managed forests were in a large extent a subset of those species present in natural forests. Our results suggest that in particular the protection of rare species requires a large total area. As managed forests have only little additional value complementing the diversity of natural forests, the conservation of natural forests is the key to ecologically effective conservation. As the dissimilarity of fungal communities increases with distance, the conserved natural forest sites should be broadly distributed in space, yet the individual conserved areas should be large enough to ensure local persistence. PMID:25058128

The importance of odor in nest site selection by a lodger bee, Centris Bicornuta Mocsáry (Hymenoptera: Apidae) in the dry forest of Costa Rica.

PubMed

Vinson, S B; Frankie, G W; Rao, A

2011-01-01

The more common lodger bee occurring in the dry forest of Costa Rica, Centris bicornuta Muscáry), has been observed nesting in new nest cavities drilled into wooden blocks placed next to cavities used by another female within 2-3 days. In contrast, new nest cavities placed in similar areas with no nesting Centris nearby were not used for weeks. These observations suggest that the presence of nesting bees may play a role in nest site selection. To confirm our observations, new nest cavities were placed in areas with or without nesting. We found nest initiation in newly placed nest cavities only in areas where bees were actively nesting. To examine the possibility that nesting locations are not unique, we placed new nest cavities in new locations either with (a) a number of completed nest cavities or (b) placed alone. Within three days we only found bees nesting in the newly placed nest cavities in situation "a". The results suggested that odor might be involved. We next compared nesting in new cavities placed alone with cavities contaminated with either (a) nest entrance plug material, (b) nest nectar, (c) nest pollen or (d) a combination of pollen and nectar. Nesting was significantly low in cavities placed next to cavities with nest entrance plug material (a), and high in cavities placed next to cavities "b, c, or d". The results suggest that pollen and /or nectar odor play a role in the location of potential nest sites.

SPAM- SPECTRAL ANALYSIS MANAGER (DEC VAX/VMS VERSION)

NASA Technical Reports Server (NTRS)

Solomon, J. E.

1994-01-01

The Spectral Analysis Manager (SPAM) was developed to allow easy qualitative analysis of multi-dimensional imaging spectrometer data. Imaging spectrometers provide sufficient spectral sampling to define unique spectral signatures on a per pixel basis. Thus direct material identification becomes possible for geologic studies. SPAM provides a variety of capabilities for carrying out interactive analysis of the massive and complex datasets associated with multispectral remote sensing observations. In addition to normal image processing functions, SPAM provides multiple levels of on-line help, a flexible command interpretation, graceful error recovery, and a program structure which can be implemented in a variety of environments. SPAM was designed to be visually oriented and user friendly with the liberal employment of graphics for rapid and efficient exploratory analysis of imaging spectrometry data. SPAM provides functions to enable arithmetic manipulations of the data, such as normalization, linear mixing, band ratio discrimination, and low-pass filtering. SPAM can be used to examine the spectra of an individual pixel or the average spectra over a number of pixels. SPAM also supports image segmentation, fast spectral signature matching, spectral library usage, mixture analysis, and feature extraction. High speed spectral signature matching is performed by using a binary spectral encoding algorithm to separate and identify mineral components present in the scene. The same binary encoding allows automatic spectral clustering. Spectral data may be entered from a digitizing tablet, stored in a user library, compared to the master library containing mineral standards, and then displayed as a timesequence spectral movie. The output plots, histograms, and stretched histograms produced by SPAM can be sent to a lineprinter, stored as separate RGB disk files, or sent to a Quick Color Recorder. SPAM is written in C for interactive execution and is available for two different machine environments. There is a DEC VAX/VMS version with a central memory requirement of approximately 242K of 8 bit bytes and a machine independent UNIX 4.2 version. The display device currently supported is the Raster Technologies display processor. Other 512 x 512 resolution color display devices, such as De Anza, may be added with minor code modifications. This program was developed in 1986.

SPAM- SPECTRAL ANALYSIS MANAGER (UNIX VERSION)

NASA Technical Reports Server (NTRS)

Solomon, J. E.

1994-01-01

The Spectral Analysis Manager (SPAM) was developed to allow easy qualitative analysis of multi-dimensional imaging spectrometer data. Imaging spectrometers provide sufficient spectral sampling to define unique spectral signatures on a per pixel basis. Thus direct material identification becomes possible for geologic studies. SPAM provides a variety of capabilities for carrying out interactive analysis of the massive and complex datasets associated with multispectral remote sensing observations. In addition to normal image processing functions, SPAM provides multiple levels of on-line help, a flexible command interpretation, graceful error recovery, and a program structure which can be implemented in a variety of environments. SPAM was designed to be visually oriented and user friendly with the liberal employment of graphics for rapid and efficient exploratory analysis of imaging spectrometry data. SPAM provides functions to enable arithmetic manipulations of the data, such as normalization, linear mixing, band ratio discrimination, and low-pass filtering. SPAM can be used to examine the spectra of an individual pixel or the average spectra over a number of pixels. SPAM also supports image segmentation, fast spectral signature matching, spectral library usage, mixture analysis, and feature extraction. High speed spectral signature matching is performed by using a binary spectral encoding algorithm to separate and identify mineral components present in the scene. The same binary encoding allows automatic spectral clustering. Spectral data may be entered from a digitizing tablet, stored in a user library, compared to the master library containing mineral standards, and then displayed as a timesequence spectral movie. The output plots, histograms, and stretched histograms produced by SPAM can be sent to a lineprinter, stored as separate RGB disk files, or sent to a Quick Color Recorder. SPAM is written in C for interactive execution and is available for two different machine environments. There is a DEC VAX/VMS version with a central memory requirement of approximately 242K of 8 bit bytes and a machine independent UNIX 4.2 version. The display device currently supported is the Raster Technologies display processor. Other 512 x 512 resolution color display devices, such as De Anza, may be added with minor code modifications. This program was developed in 1986.

Lunar textural analysis based on WAC-derived kilometer-scale roughness and entropy maps

NASA Astrophysics Data System (ADS)

Li, Bo; Wang, XueQiang; Zhang, Jiang; Chen, Jian; Ling, Zongcheng

2016-06-01

In general, textures are thought to be some complicated repeated patterns formed by elements, or primitives which are sorted in certain rules. Lunar surfaces record the interactions between its outside environment and itself, thus, based on high-resolution DEM model or image data, there are some topographic features which have different roughness and entropy values or signatures on lunar surfaces. Textures of lunar surfaces can help us to concentrate on typical topographic and photometric variations and reveal the relationships between obvious features (craters, impact basins, sinuous rilles (SRs) and ridges) with resurfacing processes on the Moon. In this paper, the term surface roughness is an expression of the variability of a topographic or photometric surface at kilometer scale, and the term entropy can characterize the variability inherent in a geological and topographic unit and evaluate the uncertainty of predictions made by a given geological process. We use the statistical moments of gray-level histograms in different-sized neighborhoods (e.g., 3, 5, 10, 20, 40 and 80 pixels) to compute the kilometer-scale roughness and entropy values, using the mosaic image from 70°N to 70°S obtained by Lunar Reconnaissance Orbiter (LRO) Wide Angle Camera (WAC). Large roughness and entropy signatures were only found in the larger scale maps, while the smallest 3-pixel scale map had more disorderly and unsystematic textures. According to the entropy values in 10-pixel scale entropy map, we made a frequency curve and categorized lunar surfaces into three types, shadow effects, maria and highlands. A 2D scatter plot of entropy versus roughness values was produced and we found that there were two point clusters corresponding to the highlands and maria, respectively. In the last, we compared the topographic and photometric signatures derived from Lunar Orbiter Laser Altimeter (LOLA) data and WAC mosaic image. On the lunar surfaces, the ridges have obvious multilevel topographic textures which are sensitive to the topographic changes, while the ejecta deposits of fresh craters appear obvious photometric textures which are sensitive to the brightness variations.

High-tech or field techs: Radio-telemetry is a cost-effective method for reducing bias in songbird nest searching

USGS Publications Warehouse

Peterson, Sean M.; Streby, Henry M.; Lehman, Justin A.; Kramer, Gunnar R.; Fish, Alexander C.; Andersen, David E.

2015-01-01

We compared the efficacy of standard nest-searching methods with finding nests via radio-tagged birds to assess how search technique influenced our determination of nest-site characteristics and nest success for Golden-winged Warblers (Vermivora chrysoptera). We also evaluated the cost-effectiveness of using radio-tagged birds to find nests. Using standard nest-searching techniques for 3 populations, we found 111 nests in locations with habitat characteristics similar to those described in previous studies: edges between forest and relatively open areas of early successional vegetation or shrubby wetlands, with 43% within 5 m of forest edge. The 83 nests found using telemetry were about half as likely (23%) to be within 5 m of forest edge. We spent little time searching >25 m into forest because published reports state that Golden-winged Warblers do not nest there. However, 14 nests found using telemetry (18%) were >25 m into forest. We modeled nest success using nest-searching method, nest age, and distance to forest edge as explanatory variables. Nest-searching method explained nest success better than nest age alone; we estimated that nests found using telemetry were 10% more likely to fledge young than nests found using standard nest-searching methods. Although radio-telemetry was more expensive than standard nest searching, the cost-effectiveness of both methods differed depending on searcher experience, amount of equipment owned, and bird population density. Our results demonstrate that telemetry can be an effective method for reducing bias in Golden-winged Warbler nest samples, can be cost competitive with standard nest-searching methods in some situations, and is likely to be a useful approach for finding nests of other forest-nesting songbirds.

What determines selection and abandonment of a foraging patch by wild giant pandas (Ailuropoda melanoleuca) in winter?

PubMed

Zhang, Zejun; Zhan, Xiangjiang; Yan, Li; Li, Ming; Hu, Jinchu; Wei, Fuwen

2009-01-01

Foraging patches can be described as a nested hierarchy of aggregated resources, implying that study of foraging by wild animals should be directed across different spatial scales. However, almost all previous research on habitat selection by the giant panda has concentrated upon one scale. In this research, we carried out a field study to understand foraging patch selection by giant pandas in winter at both microhabitat and feeding site scales and, for the first time, attempted to understand how long it would stay at the feeding sites before moving on. The field survey was conducted from November 2002 to March 2003 at Fengtongzhai Nature Reserve (102 degrees 48'-103 degrees 00' E, 30 degrees 19'-30 degrees 47' N), Baoxing County of Sichuan Province, China, to collect data in both microhabitat and control plots. The microhabitat plots were located by fresh feces or foraging traces left by giant pandas, and the control plots were established to reflect the environment. Within each microhabitat plot, one 1x1 m2 plot was centralized at the center of each feeding site, in which numbers of old bamboos and old shoots, including eaten and uneaten, were counted, respectively. The results showed that winter microhabitats selected by this species were characteristic of gentle slopes and high old-shoot proportions and that the latter was even higher at feeding sites. Two selection processes, namely, from the environment to microhabitats and from the latter to feeding sites, were found during this species' foraging patch utilization. Giant pandas preferred to eat old shoots to old bamboo at feeding sites in winter and did not leave unless old-shoot density fell to lower than the average in the environment. Both microhabitats and feeding sites selected by giant pandas were characteristic of high old-shoot density, indicating that the preferred food item had a significant influence upon its foraging patch selection. The preference for gentle slopes by giant pandas was presumed to save energy in movement or reflect the need to sit and free its fore-limbs to grasp bamboo culms when feeding but also seemed to be correlated with an easier access to old shoots. The utilization of old shoots at feeding sites was assumed to help maximize energy or nutrient intake during their foraging. The difference between microhabitat plots and control plots and between microhabitats and feeding sites uncovered a continuous selection process from the environment via microhabitats to feeding sites. The utilization of old shoots at feeding sites was parallel to the marginal value theorem. The selection and abandonment of foraging patches by giant pandas was an optimal behavioral strategy adapted to their peculiar food with high cellulose and low protein. Our results uncovered the importance of multiple scales in habitat selection research. To further understand the process of habitat selection, future research should pay more attention to resolve the question of how to locate foraging patches under dense bamboo forests by the giant panda, which was traditionally considered to have poor eyesight, although our research has answered what type of habitats the giant panda prefers and when to leave.

Method of fabrication of display pixels driven by silicon thin film transistors

DOEpatents

Carey, Paul G.; Smith, Patrick M.

1999-01-01

Display pixels driven by silicon thin film transistors are fabricated on plastic substrates for use in active matrix displays, such as flat panel displays. The process for forming the pixels involves a prior method for forming individual silicon thin film transistors on low-temperature plastic substrates. Low-temperature substrates are generally considered as being incapable of withstanding sustained processing temperatures greater than about 200.degree. C. The pixel formation process results in a complete pixel and active matrix pixel array. A pixel (or picture element) in an active matrix display consists of a silicon thin film transistor (TFT) and a large electrode, which may control a liquid crystal light valve, an emissive material (such as a light emitting diode or LED), or some other light emitting or attenuating material. The pixels can be connected in arrays wherein rows of pixels contain common gate electrodes and columns of pixels contain common drain electrodes. The source electrode of each pixel TFT is connected to its pixel electrode, and is electrically isolated from every other circuit element in the pixel array.

How many pixels does it take to make a good 4"×6" print? Pixel count wars revisited

NASA Astrophysics Data System (ADS)

Kriss, Michael A.

2011-01-01

In the early 1980's the future of conventional silver-halide photographic systems was of great concern due to the potential introduction of electronic imaging systems then typified by the Sony Mavica analog electronic camera. The focus was on the quality of film-based systems as expressed in the number of equivalent number pixels and bits-per-pixel, and how many pixels would be required to create an equivalent quality image from a digital camera. It was found that 35-mm frames, for ISO 100 color negative film, contained equivalent pixels of 12 microns for a total of 18 million pixels per frame (6 million pixels per layer) with about 6 bits of information per pixel; the introduction of new emulsion technology, tabular AgX grains, increased the value to 8 bit per pixel. Higher ISO speed films had larger equivalent pixels, fewer pixels per frame, but retained the 8 bits per pixel. Further work found that a high quality 3.5" x 5.25" print could be obtained from a three layer system containing 1300 x 1950 pixels per layer or about 7.6 million pixels in all. In short, it became clear that when a digital camera contained about 6 million pixels (in a single layer using a color filter array and appropriate image processing) that digital systems would challenge and replace conventional film-based system for the consumer market. By 2005 this became the reality. Since 2005 there has been a "pixel war" raging amongst digital camera makers. The question arises about just how many pixels are required and are all pixels equal? This paper will provide a practical look at how many pixels are needed for a good print based on the form factor of the sensor (sensor size) and the effective optical modulation transfer function (optical spread function) of the camera lens. Is it better to have 16 million, 5.7-micron pixels or 6 million 7.8-micron pixels? How does intrinsic (no electronic boost) ISO speed and exposure latitude vary with pixel size? A systematic review of these issues will be provided within the context of image quality and ISO speed models developed over the last 15 years.

Can selection on nest size from nest predation explain the latitudinal gradient in clutch size?

PubMed

Biancucci, Luis; Martin, Thomas E

2010-09-01

1. Latitudinal variation in clutch sizes of birds is a well described, but poorly understood pattern. Many hypotheses have been proposed, but few have been experimentally tested, and none have been universally accepted by researchers. 2. The nest size hypothesis posits that higher nest predation in the tropics favours selection for smaller nests and thereby constrains clutch size by shrinking available space for eggs and/or nestlings in the nest. We tested this hypothesis with an experiment in a tropical forest and a comparative study between temperate and tropical field sites. 3. Specifically, we tested if: (i) predation increased with nest size; (ii) tropical birds had smaller nests controlled for body size; and (iii) clutch size was explained by nest size controlled for body size. 4. Experimental swapping of nests of different sizes showed that nest predation increased with nest size in the tropical site. Moreover, nest predation rates were higher in species with larger nests in both sites. However, nest size, corrected for body mass and phylogeny, did not differ between sites and was not related to clutch size between sites. 5. Hence, nest predation can exert selection on nest size as predicted by the hypothesis. Nest size increased with adult body mass, such that adult size might indirectly influence reproductive success through effects on nest size and nest predation risk. Ultimately, however, selection from nest predation on nest size does not explain the smaller clutch sizes typical of the tropics.

Can selection on nest size from nest predation explain the latitudinal gradient in clutch size?

USGS Publications Warehouse

Biancucci, L.; Martin, T.E.

2010-01-01

1. Latitudinal variation in clutch sizes of birds is a well described, but poorly understood pattern. Many hypotheses have been proposed, but few have been experimentally tested, and none have been universally accepted by researchers. 2. The nest size hypothesis posits that higher nest predation in the tropics favours selection for smaller nests and thereby constrains clutch size by shrinking available space for eggs and/or nestlings in the nest. We tested this hypothesis with an experiment in a tropical forest and a comparative study between temperate and tropical field sites. 3. Specifically, we tested if: (i) predation increased with nest size; (ii) tropical birds had smaller nests controlled for body size; and (iii) clutch size was explained by nest size controlled for body size. 4. Experimental swapping of nests of different sizes showed that nest predation increased with nest size in the tropical site. Moreover, nest predation rates were higher in species with larger nests in both sites. However, nest size, corrected for body mass and phylogeny, did not differ between sites and was not related to clutch size between sites. 5. Hence, nest predation can exert selection on nest size as predicted by the hypothesis. Nest size increased with adult body mass, such that adult size might indirectly influence reproductive success through effects on nest size and nest predation risk. Ultimately, however, selection from nest predation on nest size does not explain the smaller clutch sizes typical of the tropics.

Canada goose nest survival at rural wetlands in north-central Iowa

USGS Publications Warehouse

Ness, Brenna N.; Klaver, Robert W.

2016-01-01

The last comprehensive nest survival study of the breeding giant Canada goose (Branta canadensis maxima) population in Iowa, USA, was conducted >30 years ago during a period of population recovery, during which available nesting habitat consisted primarily of artificial nest structures. Currently, Iowa's resident goose population is stable and nests in a variety of habitats. We analyzed the effects of available habitat on nest survival and how nest survival rates compared with those of the expanding goose population studied previously to better understand how to maintain a sustainable Canada goose population in Iowa. We documented Canada goose nest survival at rural wetland sites in north-central Iowa. We monitored 121 nests in 2013 and 149 nests in 2014 at 5 Wildlife Management Areas (WMAs) with various nesting habitats, including islands, muskrat (Ondatra zibethicus) houses, and elevated nest structures. We estimated daily nest-survival rate using the nest survival model in Program MARK. Survival was influenced by year, site, stage, presence of a camera, nest age, and an interaction between nest age and stage. Nest success rates for the 28-day incubation period by site and year combination ranged from 0.10 to 0.84. Nest survival was greatest at sites with nest structures (β = 17.34). Nest survival was negatively affected by lowered water levels at Rice Lake WMA (2013 β = −0.77, nest age β = −0.07). Timing of water-level drawdowns for shallow lake restorations may influence nest survival rates.

Density-dependent nest predation in waterfowl: the relative importance of nest density versus nest dispersion

USGS Publications Warehouse

Ackerman, Joshua T.; Ringelman, Kevin M.; Eadie, J.M.

2012-01-01

When nest predation levels are very high or very low, the absolute range of observable nest success is constrained (a floor/ceiling effect), and it may be more difficult to detect density-dependent nest predation. Density-dependent nest predation may be more detectable in years with moderate predation rates, simply because there can be a greater absolute difference in nest success between sites. To test this, we replicated a predation experiment 10 years after the original study, using both natural and artificial nests, comparing a year when overall rates of nest predation were high (2000) to a year with moderate nest predation (2010). We found no evidence for density-dependent predation on artificial nests in either year, indicating that nest predation is not density-dependent at the spatial scale of our experimental replicates (1-ha patches). Using nearest-neighbor distances as a measure of nest dispersion, we also found little evidence for “dispersion-dependent” predation on artificial nests. However, when we tested for dispersion-dependent predation using natural nests, we found that nest survival increased with shorter nearest-neighbor distances, and that neighboring nests were more likely to share the same nest fate than non-adjacent nests. Thus, at small spatial scales, density-dependence appears to operate in the opposite direction as predicted: closer nearest neighbors are more likely to be successful. We suggest that local nest dispersion, rather than larger-scale measures of nest density per se, may play a more important role in density-dependent nest predation.

[Fleas from the nests of Passer domesticus and Passer montanus].

PubMed

Kaczmarek, S

1991-01-01

In the years 1986-1988 102 nests of Passer domesticus and 113 nests of P. montanus were collected from Słupsk, Warszawa and its surrounding. Ceratophyllus gallinae was found in 55 nests of P. domesticus and in 74 nests of P. montanus: C. fringillae in 13 nests of P. domesticus. The highest mean number of C. gallinae per nest was recorded in nest of P. domesticus (11.9), lower in nest of P. montanus (5.9). The highest percentage of nests with fleas and the highest mean number of fleas per nest were recorded in September in P. domesticus and in June, July and September in P. montanus. The highest (111) nests to be inhabited by 1-10 specimens. Number of specimens in nests was not depending on the weight nests.

Individual variation in nest size and nest site features of the Bornean orangutans (Pongo pygmaeus).

PubMed

Rayadin, Yaya; Saitoh, Takashi

2009-05-01

Nest construction is a daily habit of independent orangutans for sleeping or resting. Data on their nests have been used in various ecological studies (e.g., density estimation, ranging behavior, evolution of material culture) because they are the most observable field signs. We investigated nest size and nest site features of Bornean orangutans in the wild during 10 months' fieldwork at three sites in East Kalimantan, Indonesia: Kutai National Park, Birawa, and Meratus. To examine individual variation, we followed 31 individual orangutans and recorded the 92 nests they made for nest size (diameter) and nest site features (height of nest above ground, tree species used for the nest site, the diameter and height of the tree, whether the nest was new or reused, and nest location within the tree). Analyses taking age-sex classes of the focal individuals into consideration showed significant age-sex differences in nest size and location, but not in nest height or nest tree features (diameter, height of tree, and height of lowest branch). Mature orangutans (adult females, unflanged and flanged males) made larger nests than immatures (juveniles and adolescents). Flanged male orangutans with larger nests used stable locations for nesting sites and reused old nests more frequently than immatures. The overall proportion of nests in open (exposed) locations was higher than in closed (sheltered) locations. Flanged males and immatures frequently made open nests, whereas adult females with an infant preferred closed locations. The good correspondence between nest size and age-sex classes indicates that nest size variation may reflect body size and therefore age-sex variation in the population. (c) 2009 Wiley-Liss, Inc.

Impact of defective pixels in AMLCDs on the perception of medical images

NASA Astrophysics Data System (ADS)

Kimpe, Tom; Sneyders, Yuri

2006-03-01

With LCD displays, each pixel has its own individual transistor that controls the transmittance of that pixel. Occasionally, these individual transistors will short or alternatively malfunction, resulting in a defective pixel that always shows the same brightness. With ever increasing resolution of displays the number of defect pixels per display increases accordingly. State of the art processes are capable of producing displays with no more than one faulty transistor out of 3 million. A five Mega Pixel medical LCD panel contains 15 million individual sub pixels (3 sub pixels per pixel), each having an individual transistor. This means that a five Mega Pixel display on average will have 5 failing pixels. This paper investigates the visibility of defective pixels and analyzes the possible impact of defective pixels on the perception of medical images. JND simulations were done to study the effect of defective pixels on medical images. Our results indicate that defective LCD pixels can mask subtle features in medical images in an unexpectedly broad area around the defect and therefore may reduce the quality of diagnosis for specific high-demanding areas such as mammography. As a second contribution an innovative solution is proposed. A specialized image processing algorithm can make defective pixels completely invisible and moreover can also recover the information of the defect so that the radiologist perceives the medical image correctly. This correction algorithm has been validated with both JND simulations and psycho visual tests.

Applications of Fractal Analytical Techniques in the Estimation of Operational Scale

NASA Technical Reports Server (NTRS)

Emerson, Charles W.; Quattrochi, Dale A.

2000-01-01

The observational scale and the resolution of remotely sensed imagery are essential considerations in the interpretation process. Many atmospheric, hydrologic, and other natural and human-influenced spatial phenomena are inherently scale dependent and are governed by different physical processes at different spatial domains. This spatial and operational heterogeneity constrains the ability to compare interpretations of phenomena and processes observed in higher spatial resolution imagery to similar interpretations obtained from lower resolution imagery. This is a particularly acute problem, since longterm global change investigations will require high spatial resolution Earth Observing System (EOS), Landsat 7, or commercial satellite data to be combined with lower resolution imagery from older sensors such as Landsat TM and MSS. Fractal analysis is a useful technique for identifying the effects of scale changes on remotely sensed imagery. The fractal dimension of an image is a non-integer value between two and three which indicates the degree of complexity in the texture and shapes depicted in the image. A true fractal surface exhibits self-similarity, a property of curves or surfaces where each part is indistinguishable from the whole, or where the form of the curve or surface is invariant with respect to scale. Theoretically, if the digital numbers of a remotely sensed image resemble an ideal fractal surface, then due to the self-similarity property, the fractal dimension of the image will not vary with scale and resolution, and the slope of the fractal dimension-resolution relationship would be zero. Most geographical phenomena, however, are not self-similar at all scales, but they can be modeled by a stochastic fractal in which the scaling properties of the image exhibit patterns that can be described by statistics such as area-perimeter ratios and autocovariances. Stochastic fractal sets relax the self-similarity assumption and measure many scales and resolutions to represent the varying form of a phenomenon as the pixel size is increased in a convolution process. We have observed that for images of homogeneous land covers, the fractal dimension varies linearly with changes in resolution or pixel size over the range of past, current, and planned space-borne sensors. This relationship differs significantly in images of agricultural, urban, and forest land covers, with urban areas retaining the same level of complexity, forested areas growing smoother, and agricultural areas growing more complex as small pixels are aggregated into larger, mixed pixels. Images of scenes having a mixture of land covers have fractal dimensions that exhibit a non-linear, complex relationship to pixel size. Measuring the fractal dimension of a difference image derived from two images of the same area obtained on different dates showed that the fractal dimension increased steadily, then exhibited a sharp decrease at increasing levels of pixel aggregation. This breakpoint of the fractal dimension/resolution plot is related to the spatial domain or operational scale of the phenomenon exhibiting the predominant visible difference between the two images (in this case, mountain snow cover). The degree to which an image departs from a theoretical ideal fractal surface provides clues as to how much information is altered or lost in the processes of rescaling and rectification. The measured fractal dimension of complex, composite land covers such as urban areas also provides a useful textural index that can assist image classification of complex scenes.

Thermal wake/vessel detection technique

DOEpatents

Roskovensky, John K [Albuquerque, NM; Nandy, Prabal [Albuquerque, NM; Post, Brian N [Albuquerque, NM

2012-01-10

A computer-automated method for detecting a vessel in water based on an image of a portion of Earth includes generating a thermal anomaly mask. The thermal anomaly mask flags each pixel of the image initially deemed to be a wake pixel based on a comparison of a thermal value of each pixel against other thermal values of other pixels localized about each pixel. Contiguous pixels flagged by the thermal anomaly mask are grouped into pixel clusters. A shape of each of the pixel clusters is analyzed to determine whether each of the pixel clusters represents a possible vessel detection event. The possible vessel detection events are represented visually within the image.

Smart trigger logic for focal plane arrays

DOEpatents

Levy, James E; Campbell, David V; Holmes, Michael L; Lovejoy, Robert; Wojciechowski, Kenneth; Kay, Randolph R; Cavanaugh, William S; Gurrieri, Thomas M

2014-03-25

An electronic device includes a memory configured to receive data representing light intensity values from pixels in a focal plane array and a processor that analyzes the received data to determine which light values correspond to triggered pixels, where the triggered pixels are those pixels that meet a predefined set of criteria, and determines, for each triggered pixel, a set of neighbor pixels for which light intensity values are to be stored. The electronic device also includes a buffer that temporarily stores light intensity values for at least one previously processed row of pixels, so that when a triggered pixel is identified in a current row, light intensity values for the neighbor pixels in the previously processed row and for the triggered pixel are persistently stored, as well as a data transmitter that transmits the persistently stored light intensity values for the triggered and neighbor pixels to a data receiver.

Method and System for Temporal Filtering in Video Compression Systems

NASA Technical Reports Server (NTRS)

Lu, Ligang; He, Drake; Jagmohan, Ashish; Sheinin, Vadim

2011-01-01

Three related innovations combine improved non-linear motion estimation, video coding, and video compression. The first system comprises a method in which side information is generated using an adaptive, non-linear motion model. This method enables extrapolating and interpolating a visual signal, including determining the first motion vector between the first pixel position in a first image to a second pixel position in a second image; determining a second motion vector between the second pixel position in the second image and a third pixel position in a third image; determining a third motion vector between the first pixel position in the first image and the second pixel position in the second image, the second pixel position in the second image, and the third pixel position in the third image using a non-linear model; and determining a position of the fourth pixel in a fourth image based upon the third motion vector. For the video compression element, the video encoder has low computational complexity and high compression efficiency. The disclosed system comprises a video encoder and a decoder. The encoder converts the source frame into a space-frequency representation, estimates the conditional statistics of at least one vector of space-frequency coefficients with similar frequencies, and is conditioned on previously encoded data. It estimates an encoding rate based on the conditional statistics and applies a Slepian-Wolf code with the computed encoding rate. The method for decoding includes generating a side-information vector of frequency coefficients based on previously decoded source data and encoder statistics and previous reconstructions of the source frequency vector. It also performs Slepian-Wolf decoding of a source frequency vector based on the generated side-information and the Slepian-Wolf code bits. The video coding element includes receiving a first reference frame having a first pixel value at a first pixel position, a second reference frame having a second pixel value at a second pixel position, and a third reference frame having a third pixel value at a third pixel position. It determines a first motion vector between the first pixel position and the second pixel position, a second motion vector between the second pixel position and the third pixel position, and a fourth pixel value for a fourth frame based upon a linear or nonlinear combination of the first pixel value, the second pixel value, and the third pixel value. A stationary filtering process determines the estimated pixel values. The parameters of the filter may be predetermined constants.

The importance of illumination in nest site choice and nest characteristics of cavity nesting birds.

PubMed

Podkowa, Paweł; Surmacki, Adrian

2017-05-02

Light has a significant impact on many aspects of avian biology, physiology and behaviour. An increasing number of studies show that illumination may positively influences birds' offspring fitness by e.g. acceleration of embryo development, stimulation of skeleton growth or regulation of circadian rhythm. Because nest cavities have especially low illumination, suitable light levels may be especially important for species which nest there. We may therefore expect that birds breeding in relatively dim conditions should prefer brighter nest sites and/or evolve behavioral mechanisms to secure sufficient light levels in the nest. Using nest boxes with modified internal illumination, we experimentally tested whether light regime is a cue for nest site selection of secondary cavity-nesting species. Additionally, we investigated whether nest building strategies are tuned to internal illumination. Our results demonstrate that, nest boxes with elevated illumination were chosen twice as often as dark nest boxes. Moreover, birds built higher nests in dark nest boxes than birds in boxes with elevated illumination, which suggests a mechanism of compensating for low light conditions. Our results provide the first experimental support for the idea that nest site choice and nest building behaviour in cavity-nesting birds are influenced by ambient illumination.

Variable pixel size ionospheric tomography

NASA Astrophysics Data System (ADS)

Zheng, Dunyong; Zheng, Hongwei; Wang, Yanjun; Nie, Wenfeng; Li, Chaokui; Ao, Minsi; Hu, Wusheng; Zhou, Wei

2017-06-01

A novel ionospheric tomography technique based on variable pixel size was developed for the tomographic reconstruction of the ionospheric electron density (IED) distribution. In variable pixel size computerized ionospheric tomography (VPSCIT) model, the IED distribution is parameterized by a decomposition of the lower and upper ionosphere with different pixel sizes. Thus, the lower and upper IED distribution may be very differently determined by the available data. The variable pixel size ionospheric tomography and constant pixel size tomography are similar in most other aspects. There are some differences between two kinds of models with constant and variable pixel size respectively, one is that the segments of GPS signal pay should be assigned to the different kinds of pixel in inversion; the other is smoothness constraint factor need to make the appropriate modified where the pixel change in size. For a real dataset, the variable pixel size method distinguishes different electron density distribution zones better than the constant pixel size method. Furthermore, it can be non-chided that when the effort is spent to identify the regions in a model with best data coverage. The variable pixel size method can not only greatly improve the efficiency of inversion, but also produce IED images with high fidelity which are the same as a used uniform pixel size method. In addition, variable pixel size tomography can reduce the underdetermined problem in an ill-posed inverse problem when the data coverage is irregular or less by adjusting quantitative proportion of pixels with different sizes. In comparison with constant pixel size tomography models, the variable pixel size ionospheric tomography technique achieved relatively good results in a numerical simulation. A careful validation of the reliability and superiority of variable pixel size ionospheric tomography was performed. Finally, according to the results of the statistical analysis and quantitative comparison, the proposed method offers an improvement of 8% compared with conventional constant pixel size tomography models in the forward modeling.

The metabolic cost of nesting: body condition and blood parameters of Caiman crocodilus and Melanosuchus niger in Central Amazonia.

PubMed

Barão-Nóbrega, José António Lemos; Marioni, Boris; Botero-Arias, Robinson; Nogueira, António José Arsénia; Lima, Emerson Silva; Magnusson, William Ernest; Da Silveira, Ronis; Marcon, Jaydione Luiz

2018-01-01

Although nesting ecology is well studied in several crocodilian species, it is not known how nest attendance influences physiology and body condition of nesting females. In this study, we describe body condition and serum biochemical values of nesting female, non-nesting female and male spectacled caiman (Caiman crocodilus) and black caiman (Melanosuchus niger) in two areas of Central Amazonia. We also evaluated the effect of nest age and nest distance to water on body condition and blood parameters of nesting females. Body condition and plasmatic concentrations of glucose, triglycerides, lactate and uric acid of nesting females were significantly different from those of non-nesting females and males in C. crocodilus, but not in M. niger. Our study also demonstrated that nest age and distance to water had a negative effect on female body condition in C. crocodilus, but not in M. niger. Female C. crocodilus attending older nests or nests built further away from permanent water bodies tended to have lower body condition. Our results demonstrate that the nesting strategy of C. crocodilus has a metabolic cost associated with nest attendance for nesting females, which appear to depend on accumulated energetic reserves during nest attendance. In contrast, nest attendance had little effect on the physiology of female M. niger.

Correction to: The metabolic cost of nesting: body condition and blood parameters of Caiman crocodilus and Melanosuchus niger in Central Amazonia.

PubMed

Barão-Nóbrega, José António Lemos; Marioni, Boris; Botero-Arias, Robinson; Nogueira, António José Arsénia; Lima, Emerson Silva; Magnusson, William Ernest; Da Silveira, Ronis; Marcon, Jaydione Luiz

2017-11-13

Although nesting ecology is well studied in several crocodilian species, it is not known how nest attendance influences physiology and body condition of nesting females. In this study, we describe body condition and serum biochemical values of nesting female, non-nesting female and male spectacled caiman (Caiman crocodilus) and black caiman (Melanosuchus niger) in two areas of Central Amazonia. We also evaluated the effect of nest age and nest distance to water on body condition and blood parameters of nesting females. Body condition and plasmatic concentrations of glucose, triglycerides, lactate and uric acid of nesting females were significantly different from those of non-nesting females and males in C. crocodilus, but not in M. niger. Our study also demonstrated that nest age and distance to water had a negative effect on female body condition in C. crocodilus, but not in M. niger. Female C. crocodilus attending older nests or nests built further away from permanent water bodies tended to have lower body condition. Our results demonstrate that the nesting strategy of C. crocodilus has a metabolic cost associated with nest attendance for nesting females, which appear to depend on accumulated energetic reserves during nest attendance. In contrast, nest attendance had little effect on the physiology of female M. niger.

Generation, Validation, and Application of Abundance Map Reference Data for Spectral Unmixing

NASA Astrophysics Data System (ADS)

Williams, McKay D.

Reference data ("ground truth") maps traditionally have been used to assess the accuracy of imaging spectrometer classification algorithms. However, these reference data can be prohibitively expensive to produce, often do not include sub-pixel abundance estimates necessary to assess spectral unmixing algorithms, and lack published validation reports. Our research proposes methodologies to efficiently generate, validate, and apply abundance map reference data (AMRD) to airborne remote sensing scenes. We generated scene-wide AMRD for three different remote sensing scenes using our remotely sensed reference data (RSRD) technique, which spatially aggregates unmixing results from fine scale imagery (e.g., 1-m Ground Sample Distance (GSD)) to co-located coarse scale imagery (e.g., 10-m GSD or larger). We validated the accuracy of this methodology by estimating AMRD in 51 randomly-selected 10 m x 10 m plots, using seven independent methods and observers, including field surveys by two observers, imagery analysis by two observers, and RSRD using three algorithms. Results indicated statistically-significant differences between all versions of AMRD, suggesting that all forms of reference data need to be validated. Given these significant differences between the independent versions of AMRD, we proposed that the mean of all (MOA) versions of reference data for each plot and class were most likely to represent true abundances. We then compared each version of AMRD to MOA. Best case accuracy was achieved by a version of imagery analysis, which had a mean coverage area error of 2.0%, with a standard deviation of 5.6%. One of the RSRD algorithms was nearly as accurate, achieving a mean error of 3.0%, with a standard deviation of 6.3%, showing the potential of RSRD-based AMRD generation. Application of validated AMRD to specific coarse scale imagery involved three main parts: 1) spatial alignment of coarse and fine scale imagery, 2) aggregation of fine scale abundances to produce coarse scale imagery-specific AMRD, and 3) demonstration of comparisons between coarse scale unmixing abundances and AMRD. Spatial alignment was performed using our scene-wide spectral comparison (SWSC) algorithm, which aligned imagery with accuracy approaching the distance of a single fine scale pixel. We compared simple rectangular aggregation to coarse sensor point spread function (PSF) aggregation, and found that the PSF approach returned lower error, but that rectangular aggregation more accurately estimated true abundances at ground level. We demonstrated various metrics for comparing unmixing results to AMRD, including mean absolute error (MAE) and linear regression (LR). We additionally introduced reference data mean adjusted MAE (MA-MAE), and reference data confidence interval adjusted MAE (CIA-MAE), which account for known error in the reference data itself. MA-MAE analysis indicated that fully constrained linear unmixing of coarse scale imagery across all three scenes returned an error of 10.83% per class and pixel, with regression analysis yielding a slope = 0.85, intercept = 0.04, and R2 = 0.81. Our reference data research has demonstrated a viable methodology to efficiently generate, validate, and apply AMRD to specific examples of airborne remote sensing imagery, thereby enabling direct quantitative assessment of spectral unmixing performance.

Scientific CMOS Pixels

NASA Astrophysics Data System (ADS)

Janesick, James; Gunawan, Ferry; Dosluoglu, Taner; Tower, John; McCaffrey, Niel

2002-08-01

High performance CMOS pixels are introduced; and their development is discussed. 3T (3-transistor) photodiode, 5T pinned diode, 6T photogate and 6T photogate back illuminated CMOS pixels are examined in detail, and the latter three are considered as scientific pixels. The advantages and disadvantagesof these options for scientific CMOS pixels are examined.Pixel characterization, which is used to gain a better understanding of CMOS pixels themselves, is also discussed.

Scientific CMOS Pixels

NASA Astrophysics Data System (ADS)

Janesick, J.; Gunawan, F.; Dosluoglu, T.; Tower, J.; McCaffrey, N.

High performance CMOS pixels are introduced and their development is discussed. 3T (3-transistor) photodiode, 5T pinned diode, 6T photogate and 6T photogate back illuminated CMOS pixels are examined in detail, and the latter three are considered as scientific pixels. The advantages and disadvantages of these options for scientific CMOS pixels are examined. Pixel characterization, which is used to gain a better understanding of CMOS pixels themselves, is also discussed.

Microlens performance limits in sub-2mum pixel CMOS image sensors.

PubMed

Huo, Yijie; Fesenmaier, Christian C; Catrysse, Peter B

2010-03-15

CMOS image sensors with smaller pixels are expected to enable digital imaging systems with better resolution. When pixel size scales below 2 mum, however, diffraction affects the optical performance of the pixel and its microlens, in particular. We present a first-principles electromagnetic analysis of microlens behavior during the lateral scaling of CMOS image sensor pixels. We establish for a three-metal-layer pixel that diffraction prevents the microlens from acting as a focusing element when pixels become smaller than 1.4 microm. This severely degrades performance for on and off-axis pixels in red, green and blue color channels. We predict that one-metal-layer or backside-illuminated pixels are required to extend the functionality of microlenses beyond the 1.4 microm pixel node.

Super-pixel extraction based on multi-channel pulse coupled neural network

NASA Astrophysics Data System (ADS)

Xu, GuangZhu; Hu, Song; Zhang, Liu; Zhao, JingJing; Fu, YunXia; Lei, BangJun

2018-04-01

Super-pixel extraction techniques group pixels to form over-segmented image blocks according to the similarity among pixels. Compared with the traditional pixel-based methods, the image descripting method based on super-pixel has advantages of less calculation, being easy to perceive, and has been widely used in image processing and computer vision applications. Pulse coupled neural network (PCNN) is a biologically inspired model, which stems from the phenomenon of synchronous pulse release in the visual cortex of cats. Each PCNN neuron can correspond to a pixel of an input image, and the dynamic firing pattern of each neuron contains both the pixel feature information and its context spatial structural information. In this paper, a new color super-pixel extraction algorithm based on multi-channel pulse coupled neural network (MPCNN) was proposed. The algorithm adopted the block dividing idea of SLIC algorithm, and the image was divided into blocks with same size first. Then, for each image block, the adjacent pixels of each seed with similar color were classified as a group, named a super-pixel. At last, post-processing was adopted for those pixels or pixel blocks which had not been grouped. Experiments show that the proposed method can adjust the number of superpixel and segmentation precision by setting parameters, and has good potential for super-pixel extraction.

Nest Predation Deviates from Nest Predator Abundance in an Ecologically Trapped Bird.

PubMed

Hollander, Franck A; Van Dyck, Hans; San Martin, Gilles; Titeux, Nicolas

2015-01-01

In human-modified environments, ecological traps may result from a preference for low-quality habitat where survival or reproductive success is lower than in high-quality habitat. It has often been shown that low reproductive success for birds in preferred habitat types was due to higher nest predator abundance. However, between-habitat differences in nest predation may only weakly correlate with differences in nest predator abundance. An ecological trap is at work in a farmland bird (Lanius collurio) that recently expanded its breeding habitat into open areas in plantation forests. This passerine bird shows a strong preference for forest habitat, but it has a higher nest success in farmland. We tested whether higher abundance of nest predators in the preferred habitat or, alternatively, a decoupling of nest predator abundance and nest predation explained this observed pattern of maladaptive habitat selection. More than 90% of brood failures were attributed to nest predation. Nest predator abundance was more than 50% higher in farmland, but nest predation was 17% higher in forest. Differences between nest predation on actual shrike nests and on artificial nests suggested that parent shrikes may facilitate nest disclosure for predators in forest more than they do in farmland. The level of caution by parent shrikes when visiting their nest during a simulated nest predator intrusion was the same in the two habitats, but nest concealment was considerably lower in forest, which contributes to explaining the higher nest predation in this habitat. We conclude that a decoupling of nest predator abundance and nest predation may create ecological traps in human-modified environments.

Nest Predation Deviates from Nest Predator Abundance in an Ecologically Trapped Bird

PubMed Central

Hollander, Franck A.; Van Dyck, Hans; San Martin, Gilles; Titeux, Nicolas

2015-01-01

In human-modified environments, ecological traps may result from a preference for low-quality habitat where survival or reproductive success is lower than in high-quality habitat. It has often been shown that low reproductive success for birds in preferred habitat types was due to higher nest predator abundance. However, between-habitat differences in nest predation may only weakly correlate with differences in nest predator abundance. An ecological trap is at work in a farmland bird (Lanius collurio) that recently expanded its breeding habitat into open areas in plantation forests. This passerine bird shows a strong preference for forest habitat, but it has a higher nest success in farmland. We tested whether higher abundance of nest predators in the preferred habitat or, alternatively, a decoupling of nest predator abundance and nest predation explained this observed pattern of maladaptive habitat selection. More than 90% of brood failures were attributed to nest predation. Nest predator abundance was more than 50% higher in farmland, but nest predation was 17% higher in forest. Differences between nest predation on actual shrike nests and on artificial nests suggested that parent shrikes may facilitate nest disclosure for predators in forest more than they do in farmland. The level of caution by parent shrikes when visiting their nest during a simulated nest predator intrusion was the same in the two habitats, but nest concealment was considerably lower in forest, which contributes to explaining the higher nest predation in this habitat. We conclude that a decoupling of nest predator abundance and nest predation may create ecological traps in human-modified environments. PMID:26624619

A High-Resolution Tile-Based Approach for Classifying Biological Regions in Whole-Slide Histopathological Images

PubMed Central

Hoffman, R.A.; Kothari, S.; Phan, J.H.; Wang, M.D.

2016-01-01

Computational analysis of histopathological whole slide images (WSIs) has emerged as a potential means for improving cancer diagnosis and prognosis. However, an open issue relating to the automated processing of WSIs is the identification of biological regions such as tumor, stroma, and necrotic tissue on the slide. We develop a method for classifying WSI portions (512x512-pixel tiles) into biological regions by (1) extracting a set of 461 image features from each WSI tile, (2) optimizing tile-level prediction models using nested cross-validation on a small (600 tile) manually annotated tile-level training set, and (3) validating the models against a much larger (1.7x106 tile) data set for which ground truth was available on the whole-slide level. We calculated the predicted prevalence of each tissue region and compared this prevalence to the ground truth prevalence for each image in an independent validation set. Results show significant correlation between the predicted (using automated system) and reported biological region prevalences with p < 0.001 for eight of nine cases considered. PMID:27532012

A High-Resolution Tile-Based Approach for Classifying Biological Regions in Whole-Slide Histopathological Images.

PubMed

Hoffman, R A; Kothari, S; Phan, J H; Wang, M D

Computational analysis of histopathological whole slide images (WSIs) has emerged as a potential means for improving cancer diagnosis and prognosis. However, an open issue relating to the automated processing of WSIs is the identification of biological regions such as tumor, stroma, and necrotic tissue on the slide. We develop a method for classifying WSI portions (512x512-pixel tiles) into biological regions by (1) extracting a set of 461 image features from each WSI tile, (2) optimizing tile-level prediction models using nested cross-validation on a small (600 tile) manually annotated tile-level training set, and (3) validating the models against a much larger (1.7x10 6 tile) data set for which ground truth was available on the whole-slide level. We calculated the predicted prevalence of each tissue region and compared this prevalence to the ground truth prevalence for each image in an independent validation set. Results show significant correlation between the predicted (using automated system) and reported biological region prevalences with p < 0.001 for eight of nine cases considered.

Nest and nest site characteristics of some ground-nesting, non-passerine birds of northern grasslands

USGS Publications Warehouse

Kantrud, Harold A.; Higgins, Kenneth F.

1992-01-01

We summarized biological and ecologic characteristics of 2490 nests of 16 species of upland-nesting, non-passerine birds of northern grasslands found during 1963 through 1991. Nest initiation and hatch dates, clutch sizes, nest fates, causes of failure, success rates of nests among major habitat types and land uses, and vegetation measurements at nest sites are analyzed.

Enclosed nests may provide greater thermal than nest predation benefits compared with open nests across latitudes

USGS Publications Warehouse

Martin, Thomas E.; Boyce, Andy J.; Fierro-Calderon, Karolina; Mitchell, Adam E.; Armstad, Connor E.; Mouton, James C.; Bin Soudi, Evertius E.

2017-01-01

Nest structure is thought to provide benefits that have fitness consequences for several taxa. Traditionally, reduced nest predation has been considered the primary benefit underlying evolution of nest structure, whereas thermal benefits have been considered a secondary or even non-existent factor. Yet, the relative roles of these factors on nest structures remain largely unexplored.Enclosed nests have a constructed or natural roof connected to sides that allow a restricted opening or tube entrance that provides cover in all directions except the entrance, whereas open nests are cups or platforms that are open above. We show that construction of enclosed nests is more common among songbirds (Passeriformes) in tropical and southern hemisphere regions than in north temperate regions. This geographic pattern may reflect selection from predation risk, under long-standing assumptions that nest predation rates are higher in southern regions and that enclosed nests reduce predation risk compared with open cup nests. We therefore compared nest predation rates between enclosed vs. open nests in 114 songbird species that do not nest in tree holes among five communities of coexisting birds, and for 205 non-hole-nesting species from the literature, across northern temperate, tropical, and southern hemisphere regions.Among coexisting species, enclosed nests had lower nest predation rates than open nests in two south temperate sites, but not in either of two tropical sites or a north temperate site. Nest predation did not differ between nest types at any latitude based on literature data. Among 319 species from both our field studies and the literature, enclosed nests did not show consistent benefits of reduced predation and, in fact, predation was not consistently higher in the tropics, contrary to long-standing perspectives.Thermal benefits of enclosed nests were indicated based on three indirect results. First, species that built enclosed nests were smaller than species using open nests both among coexisting species and among species from the literature. Smaller species lose heat fastest and thereby may gain important thermal benefits from reduced convective cooling. Second, eggs were warmed by parents for less time in species with enclosed nests, as can be expected if egg cooling rates are slower. Finally, species using enclosed nests exhibited enhanced growth of mass and wings compared with species using open nests, suggesting reduced thermoregulatory costs allowed increased energy for growth.Enclosed nests may therefore provide more consistent thermal than nest predation benefits, counter to long-standing perspectives.

Neighborhood comparison operator

NASA Technical Reports Server (NTRS)

Gennery, Donald B. (Inventor)

1987-01-01

Digital values in a moving window are compared by an operator having nine comparators (18) connected to line buffers (16) for receiving a succession of central pixels together with eight neighborhood pixels. A single bit of program control determines whether the neighborhood pixels are to be compared with the central pixel or a threshold value. The central pixel is always compared with the threshold. The comparator output, plus 2 bits indicating odd-even pixel/line information about the central pixel, addresses a lookup table (20) to provide 14 bits of information, including 2 bits which control a selector (22) to pass either the central pixel value, the other 12 bits of table information, or the bit-wise logic OR of all neighboring pixels.

Exotic plant species invade hot spots of native plant diversity

USGS Publications Warehouse

Stohlgren, T.J.; Binkley, Dan; Chong, G.W.; Kalkhan, M.A.; Schell, L.D.; Bull, K.A.; Otsuki, Yuka; Newman, G.; Bashkin, Michael A.; Son, Y.

1999-01-01

Some theories and experimental studies suggest that areas of low plant species richness may be invaded more easily than areas of high plant species richness. We gathered nested-scale vegetation data on plant species richness, foliar cover, and frequency from 200 1-m2 subplots (20 1000-m2 modified-Whittaker plots) in the Colorado Rockies (USA), and 160 1-m2 subplots (16 1000-m2 plots) in the Central Grasslands in Colorado, Wyoming, South Dakota, and Minnesota (USA) to test the generality of this paradigm.At the 1-m2 scale, the paradigm was supported in four prairie types in the Central Grasslands, where exotic species richness declined with increasing plant species richness and cover. At the 1-m2 scale, five forest and meadow vegetation types in the Colorado Rockies contradicted the paradigm; exotic species richness increased with native-plant species richness and foliar cover. At the 1000-m2 plot scale (among vegetation types), 83% of the variance in exotic species richness in the Central Grasslands was explained by the total percentage of nitrogen in the soil and the cover of native plant species. In the Colorado Rockies, 69% of the variance in exotic species richness in 1000-m2 plots was explained by the number of native plant species and the total percentage of soil carbon.At landscape and biome scales, exotic species primarily invaded areas of high species richness in the four Central Grasslands sites and in the five Colorado Rockies vegetation types. For the nine vegetation types in both biomes, exotic species cover was positively correlated with mean foliar cover, mean soil percentage N, and the total number of exotic species. These patterns of invasibility depend on spatial scale, biome and vegetation type, spatial autocorrelation effects, availability of resources, and species-specific responses to grazing and other disturbances. We conclude that: (1) sites high in herbaceous foliar cover and soil fertility, and hot spots of plant diversity (and biodiversity), are invasible in many landscapes; and (2) this pattern may be more closely related to the degree resources are available in native plant communities, independent of species richness. Exotic plant invasions in rare habitats and distinctive plant communities pose a significant challenge to land managers and conservation biologists.

Techniques for identifying predators of goose nests

USGS Publications Warehouse

Anthony, R. Michael; Grand, J.B.; Fondell, T.F.; Miller, David A.

2006-01-01

We used cameras and artificial eggs to identify nest predators of dusky Canada goose Branta canadensis occidentalis nests during 1997-2000. Cameras were set up at 195 occupied goose nests and 60 artificial nests. We placed wooden eggs and domestic goose eggs that were emptied and then filled with wax or foam in an additional 263 natural goose nests to identify predators from marks in the artificial eggs. All techniques had limitations, but each correctly identified predators and estimated their relative importance. Nests with cameras had higher rates of abandonment than natural nests, especially during laying. Abandonment rates were reduced by deploying artificial eggs late in laying and reducing time at nests. Predation rates for nests with cameras were slightly lower than for nests without cameras. Wax-filled artificial eggs caused mortality of embryos in natural nests, but were better for identifying predator marks at artificial nests. Use of foam-filled artificial eggs in natural nests was the most cost effective means of monitoring nest predation. ?? Wildlife Biology (2006).

A comparison of diel nest temperature and nest site selection for two sympatric species of freshwater turtles

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bodie, J.R.; Burke, V.J.; Smith, K.R.

1996-07-01

Diel nest temperature profiles were recorded form natural nests of eastern mud turtles (Kinosternon subrubrum) and Florida cooters (Pseudemys floridana) to determine whether nest microhabitat selection compensates for the effect of interspecific differences in nest depth on nest temperature. Kinosternon subrubrum nest depths were significantly shallower than those of P. floridana (t = 2.93, P < 0.01). We predicted that differences in nest depth would result in K. subrubrum nests being cooler at night and warmer during daylight than the deeper P. floridana nests. Diel temperature patterns agreed with out predictions at night, but P. floridana nest temperatures were notmore » lower than K. subrubrum nest temperatures during the day. Soil composition, slope and soil moisture were similar for the nest of both species. However, the amount of sunlight reaching the soil above K. subrubrum nest sites was substantially less than the amount above P. floridana nest sites. We suggest that these species select habitats for oviposition that differ in the amount and types of vegetative cover, which in turn affect exposure to sunlight and ultimately nest temperature. 27 refs., 2 figs.« less

Ground-nesting by the chimpanzees of the Nimba Mountains, Guinea: environmentally or socially determined?

PubMed

Koops, Kathelijne; Humle, Tatyana; Sterck, Elisabeth H M; Matsuzawa, Tetsuro

2007-04-01

The chimpanzees (Pan troglodytes verus) of the Nimba Mountains, Guinea, West Africa, commonly make both elaborate ("night") and simple ("day") nests on the ground. In this study we investigated which factors might influence ground-nesting in this population, and tested two ecological hypotheses: 1) climatic conditions, such as high wind speeds at high altitudes, may deter chimpanzees from nesting in trees; and 2) a lack of appropriate arboreal nesting opportunities may drive the chimpanzees to nest on the ground. In addition to testing these two hypotheses, we explored whether ground-nesting is a sex-linked behavior. Data were collected monthly between August 2003 and May 2004 along transects and ad libitum. To identify the sex of ground-nesting individuals, we used DNA extracted from hair samples. The results showed that the occurrence and distribution of ground nests were not affected by climatic conditions or a lack of appropriate nest trees. Support was found for the notion that ground-nesting is a sex-linked behavior, as males were responsible for building all of the elaborate ground nests and most of the simple ground nests sampled. Elaborate ground nests occurred mostly in nest groups associated with tree nests, whereas simple ground nests usually occurred without tree nests in their vicinity. These results suggest that ground-nesting may be socially, rather than ecologically, determined.

Nest-mate recognition in Manuelia postica (Apidae: Xylocopinae): an eusocial trait is present in a solitary bee.

PubMed

Flores-Prado, Luis; Aguilera-Olivares, Daniel; Niemeyer, Hermann M

2008-02-07

In eusocial Hymenoptera, females are more tolerant towards nest-mate than towards non-nest-mate females. In solitary Hymenoptera, females are generally aggressive towards any conspecific female. Field observations of the nest biology of Manuelia postica suggested nest-mate recognition. Experiments were performed involving two live interacting females or one live female interacting with a dead female. Live females from different nests were more intolerant to each other than females from the same nest. Females were more intolerant towards non-nest-mate than towards nest-mate dead females. When dead females were washed with pentane, no differences in tolerant and intolerant behaviours were detected between non-nest-mate and nest-mate females. Females were more intolerant towards nest-mate female carcasses coated with the cuticular extract from a non-nest-mate than towards non-nest-mate female carcasses coated with the cuticular extract from a nest-mate. The compositions of the cuticular extracts was more similar between females from the same nest than between females from different nests. The results demonstrate for the first time nest-mate recognition mediated by cuticular chemicals in a largely solitary species of Apidae. The position of Manuelia at the base of the Apidae phylogeny suggests that nest-mate recognition in eusocial species apical to Manuelia represents the retention of a primitive capacity in Apidae.

Large increase in nest size linked to climate change: an indicator of life history, senescence and condition.

PubMed

Møller, Anders Pape; Nielsen, Jan Tøttrup

2015-11-01

Many animals build extravagant nests that exceed the size required for successful reproduction. Large nests may signal the parenting ability of nest builders suggesting that nests may have a signaling function. In particular, many raptors build very large nests for their body size. We studied nest size in the goshawk Accipiter gentilis, which is a top predator throughout most of the Nearctic. Both males and females build nests, and males provision their females and offspring with food. Nest volume in the goshawk is almost three-fold larger than predicted from their body size. Nest size in the goshawk is highly variable and may reach more than 600 kg for a bird that weighs ca. 1 kg. While 8.5% of nests fell down, smaller nests fell down more often than large nests. There was a hump-shaped relationship between nest volume and female age, with a decline in nest volume late in life, as expected for senescence. Clutch size increased with nest volume. Nest volume increased during 1977-2014 in an accelerating fashion, linked to increasing spring temperature during April, when goshawks build and start reproduction. These findings are consistent with nest size being a reliable signal of parental ability, with large nest size signaling superior parenting ability and senescence, and also indicating climate warming.

Habitat fragmentation reduces nest survival in an Afrotropical bird community in a biodiversity hotspot

USGS Publications Warehouse

Newmark, W.D.; Stanley, T.R.

2011-01-01

Ecologists have long hypothesized that fragmentation of tropical landscapes reduces avian nest success. However, this hypothesis has not been rigorously assessed because of the difficulty of finding large numbers of well-hidden nests in tropical forests. Here we report that in the East Usambara Mountains in Tanzania, which are part of the Eastern Arc Mountains, a global biodiversity hotspot, that daily nest survival rate and nest success for seven of eight common understory bird species that we examined over a single breeding season were significantly lower in fragmented than in continuous forest, with the odds of nest failure for these seven species ranging from 1.9 to 196.8 times higher in fragmented than continuous forest. Cup-shaped nests were particularly vulnerable in fragments. We then examined over six breeding seasons and 14 study sites in a multivariable survival analysis the influence of landscape structure and nest location on daily nest survival for 13 common species representing 1,272 nests and four nest types (plate, cup, dome, and pouch). Across species and nest types, area, distance of nest to edge, and nest height had a dominant influence on daily nest survival, with area being positively related to nest survival and distance of nest to edge and nest height being both positively and negatively associated with daily nest survival. Our results indicate that multiple environmental factors contribute to reduce nest survival within a tropical understory bird community in a fragmented landscape and that maintaining large continuous forest is important for enhancing nest survival for Afrotropical understory birds.

Habitat fragmentation reduces nest survival in an Afrotropical bird community in a biodiversity hotspot.

PubMed

Newmark, William D; Stanley, Thomas R

2011-07-12

Ecologists have long hypothesized that fragmentation of tropical landscapes reduces avian nest success. However, this hypothesis has not been rigorously assessed because of the difficulty of finding large numbers of well-hidden nests in tropical forests. Here we report that in the East Usambara Mountains in Tanzania, which are part of the Eastern Arc Mountains, a global biodiversity hotspot, that daily nest survival rate and nest success for seven of eight common understory bird species that we examined over a single breeding season were significantly lower in fragmented than in continuous forest, with the odds of nest failure for these seven species ranging from 1.9 to 196.8 times higher in fragmented than continuous forest. Cup-shaped nests were particularly vulnerable in fragments. We then examined over six breeding seasons and 14 study sites in a multivariable survival analysis the influence of landscape structure and nest location on daily nest survival for 13 common species representing 1,272 nests and four nest types (plate, cup, dome, and pouch). Across species and nest types, area, distance of nest to edge, and nest height had a dominant influence on daily nest survival, with area being positively related to nest survival and distance of nest to edge and nest height being both positively and negatively associated with daily nest survival. Our results indicate that multiple environmental factors contribute to reduce nest survival within a tropical understory bird community in a fragmented landscape and that maintaining large continuous forest is important for enhancing nest survival for Afrotropical understory birds.

Habitat fragmentation reduces nest survival in an Afrotropical bird community in a biodiversity hotspot

PubMed Central

Newmark, William D.; Stanley, Thomas R.

2011-01-01

Ecologists have long hypothesized that fragmentation of tropical landscapes reduces avian nest success. However, this hypothesis has not been rigorously assessed because of the difficulty of finding large numbers of well-hidden nests in tropical forests. Here we report that in the East Usambara Mountains in Tanzania, which are part of the Eastern Arc Mountains, a global biodiversity hotspot, that daily nest survival rate and nest success for seven of eight common understory bird species that we examined over a single breeding season were significantly lower in fragmented than in continuous forest, with the odds of nest failure for these seven species ranging from 1.9 to 196.8 times higher in fragmented than continuous forest. Cup-shaped nests were particularly vulnerable in fragments. We then examined over six breeding seasons and 14 study sites in a multivariable survival analysis the influence of landscape structure and nest location on daily nest survival for 13 common species representing 1,272 nests and four nest types (plate, cup, dome, and pouch). Across species and nest types, area, distance of nest to edge, and nest height had a dominant influence on daily nest survival, with area being positively related to nest survival and distance of nest to edge and nest height being both positively and negatively associated with daily nest survival. Our results indicate that multiple environmental factors contribute to reduce nest survival within a tropical understory bird community in a fragmented landscape and that maintaining large continuous forest is important for enhancing nest survival for Afrotropical understory birds. PMID:21709237

Selecting Pixels for Kepler Downlink

NASA Technical Reports Server (NTRS)

Bryson, Stephen T.; Jenkins, Jon M.; Klaus, Todd C.; Cote, Miles T.; Quintana, Elisa V.; Hall, Jennifer R.; Ibrahim, Khadeejah; Chandrasekaran, Hema; Caldwell, Douglas A.; Van Cleve, Jeffrey E.;

Image Edge Extraction via Fuzzy Reasoning

NASA Technical Reports Server (NTRS)

Dominquez, Jesus A. (Inventor); Klinko, Steve (Inventor)

2008-01-01

A computer-based technique for detecting edges in gray level digital images employs fuzzy reasoning to analyze whether each pixel in an image is likely on an edge. The image is analyzed on a pixel-by-pixel basis by analyzing gradient levels of pixels in a square window surrounding the pixel being analyzed. An edge path passing through the pixel having the greatest intensity gradient is used as input to a fuzzy membership function, which employs fuzzy singletons and inference rules to assigns a new gray level value to the pixel that is related to the pixel's edginess degree.

Design and characterization of high precision in-pixel discriminators for rolling shutter CMOS pixel sensors with full CMOS capability

NASA Astrophysics Data System (ADS)

Fu, Y.; Hu-Guo, C.; Dorokhov, A.; Pham, H.; Hu, Y.

2013-07-01

In order to exploit the ability to integrate a charge collecting electrode with analog and digital processing circuitry down to the pixel level, a new type of CMOS pixel sensors with full CMOS capability is presented in this paper. The pixel array is read out based on a column-parallel read-out architecture, where each pixel incorporates a diode, a preamplifier with a double sampling circuitry and a discriminator to completely eliminate analog read-out bottlenecks. The sensor featuring a pixel array of 8 rows and 32 columns with a pixel pitch of 80 μm×16 μm was fabricated in a 0.18 μm CMOS process. The behavior of each pixel-level discriminator isolated from the diode and the preamplifier was studied. The experimental results indicate that all in-pixel discriminators which are fully operational can provide significant improvements in the read-out speed and the power consumption of CMOS pixel sensors.

Nest-site preference of northern goshawks in southcentral Wyoming

Treesearch

John R. Squires; Leonard F. Ruggiero

1996-01-01

In 1992, we studied the nest-site preference of goshawks (Accipiter gentilis atricapillus) nesting in lodgepole pine (Pinus contorta) forests of the Medicine Bow National Forest, southcentral Wyoming. For 39 active pairs of goshawks, we described nesting habitat at 3 spatial scales: nest tree, nest-tree area (0.04 ha circle centered at nest tree), and nest stand (...

Results of calibrations of the NOAA-11 AVHRR made by reference to calibrated SPOT imagery at White Sands, N.M

NASA Technical Reports Server (NTRS)

Nianzeng, Che; Grant, Barbara G.; Flittner, David E.; Slater, Philip N.; Biggar, Stuart F.; Jackson, Ray D.; Moran, M. S.

1991-01-01

The calibration method reported here makes use of the reflectances of several large, uniform areas determined from calibrated and atmospherically corrected SPOT Haute Resolution Visible (HRV) scenes of White Sands, New Mexico. These reflectances were used to predict the radiances in the first two channels of the NOAA-11 Advanced Very High Resolution Radiometer (AVHRR). The digital counts in the AVHRR image corresponding to these known reflectance areas were determined by the use of two image registration techniques. The plots of digital counts versus pixel radiance provided the calibration gains and offsets for the AVHRR. A reduction in the gains of 4 and 13 percent in channels 1 and 2 respectively was found during the period 1988-11-19 to 1990-6-21. An error budget is presented for the method and is extended to the case of cross-calibrating sensors on the same orbital platform in the Earth Observing System (EOS) era.

Image Processing Of Images From Peripheral-Artery Digital Subtraction Angiography (DSA) Studies

NASA Astrophysics Data System (ADS)

Wilson, David L.; Tarbox, Lawrence R.; Cist, David B.; Faul, David D.

1988-06-01

A system is being developed to test the possibility of doing peripheral, digital subtraction angiography (DSA) with a single contrast injection using a moving gantry system. Given repositioning errors that occur between the mask and contrast-containing images, factors affecting the success of subtractions following image registration have been investigated theoretically and experimentally. For a 1 mm gantry displacement, parallax and geometric image distortion (pin-cushion) both give subtraction errors following registration that are approximately 25% of the error resulting from no registration. Image processing techniques improve the subtractions. The geometric distortion effect is reduced using a piece-wise, 8 parameter unwarping method. Plots of image similarity measures versus pixel shift are well behaved and well fit by a parabola, leading to the development of an iterative, automatic registration algorithm that uses parabolic prediction of the new minimum. The registration algorithm converges quickly (less than 1 second on a MicroVAX) and is relatively immune to the region of interest (ROI) selected.

Monitoring the WFC3/UVIS Relative Gain with Internal Flatfields

NASA Astrophysics Data System (ADS)

Fowler, J.; Baggett, S.

2017-03-01

The WFC3/UVIS gain stability has been monitored twice yearly. This project provides a new examination of gain stability, making use of the existing internal flatfield observations taken every three days (for the Bowtie monitor) for a regular look at relative gain stability. Amplifiers are examined for consistency both in comparison to each other and over time, by normalizing the B, C, and D amplifiers to A, and then plotting statistics for each of the three normalized amplifiers with time. We find minimal trends in these statistics, with a 0.02 - 0.2% change in mean amplifier ratio over 7.5 years. The trends in the amplifiers are well-behaved with the exception of the B/A ratio, which shows increased scatter in mean, median, and standard deviation. The cause of the scatter remains unclear though we find it is not dependent upon detector defects, filter features, or shutter effects, and is only observable after pixel flagging (both from the data quality arrays and outlier values) has been applied.

Neighborhood comparison operator

NASA Technical Reports Server (NTRS)

Gennery, D. B. (Inventor)

1985-01-01

Digital values in a moving window are compared by an operator having nine comparators connected to line buffers for receiving a succession of central pixels together with eight neighborhood pixels. A single bit of program control determines whether the neighborhood pixels are to be compared with the central pixel or a threshold value. The central pixel is always compared with the threshold. The omparator output plus 2 bits indicating odd-even pixel/line information about the central pixel addresses a lookup table to provide 14 bits of information, including 2 bits which control a selector to pass either the central pixel value, the other 12 bits of table information, or the bit-wise logical OR of all nine pixels through circuit that implements a very wide OR gate.

Method and system for non-linear motion estimation

NASA Technical Reports Server (NTRS)

Lu, Ligang (Inventor)

2011-01-01

A method and system for extrapolating and interpolating a visual signal including determining a first motion vector between a first pixel position in a first image to a second pixel position in a second image, determining a second motion vector between the second pixel position in the second image and a third pixel position in a third image, determining a third motion vector between one of the first pixel position in the first image and the second pixel position in the second image, and the second pixel position in the second image and the third pixel position in the third image using a non-linear model, determining a position of the fourth pixel in a fourth image based upon the third motion vector.

Variation in clutch size in relation to nest size in birds

PubMed Central

Møller, Anders P; Adriaensen, Frank; Artemyev, Alexandr; Bańbura, Jerzy; Barba, Emilio; Biard, Clotilde; Blondel, Jacques; Bouslama, Zihad; Bouvier, Jean-Charles; Camprodon, Jordi; Cecere, Francesco; Charmantier, Anne; Charter, Motti; Cichoń, Mariusz; Cusimano, Camillo; Czeszczewik, Dorota; Demeyrier, Virginie; Doligez, Blandine; Doutrelant, Claire; Dubiec, Anna; Eens, Marcel; Eeva, Tapio; Faivre, Bruno; Ferns, Peter N; Forsman, Jukka T; García-Del-Rey, Eduardo; Goldshtein, Aya; Goodenough, Anne E; Gosler, Andrew G; Góźdź, Iga; Grégoire, Arnaud; Gustafsson, Lars; Hartley, Ian R; Heeb, Philipp; Hinsley, Shelley A; Isenmann, Paul; Jacob, Staffan; Järvinen, Antero; Juškaitis, Rimvydas; Korpimäki, Erkki; Krams, Indrikis; Laaksonen, Toni; Leclercq, Bernard; Lehikoinen, Esa; Loukola, Olli; Lundberg, Arne; Mainwaring, Mark C; Mänd, Raivo; Massa, Bruno; Mazgajski, Tomasz D; Merino, Santiago; Mitrus, Cezary; Mönkkönen, Mikko; Morales-Fernaz, Judith; Morin, Xavier; Nager, Ruedi G; Nilsson, Jan-Åke; Nilsson, Sven G; Norte, Ana C; Orell, Markku; Perret, Philippe; Pimentel, Carla S; Pinxten, Rianne; Priedniece, Ilze; Quidoz, Marie-Claude; Remeš, Vladimir; Richner, Heinz; Robles, Hugo; Rytkönen, Seppo; Senar, Juan Carlos; Seppänen, Janne T; da Silva, Luís P; Slagsvold, Tore; Solonen, Tapio; Sorace, Alberto; Stenning, Martyn J; Török, János; Tryjanowski, Piotr; van Noordwijk, Arie J; von Numers, Mikael; Walankiewicz, Wiesław; Lambrechts, Marcel M

2014-01-01

Nests are structures built to support and protect eggs and/or offspring from predators, parasites, and adverse weather conditions. Nests are mainly constructed prior to egg laying, meaning that parent birds must make decisions about nest site choice and nest building behavior before the start of egg-laying. Parent birds should be selected to choose nest sites and to build optimally sized nests, yet our current understanding of clutch size-nest size relationships is limited to small-scale studies performed over short time periods. Here, we quantified the relationship between clutch size and nest size, using an exhaustive database of 116 slope estimates based on 17,472 nests of 21 species of hole and non-hole-nesting birds. There was a significant, positive relationship between clutch size and the base area of the nest box or the nest, and this relationship did not differ significantly between open nesting and hole-nesting species. The slope of the relationship showed significant intraspecific and interspecific heterogeneity among four species of secondary hole-nesting species, but also among all 116 slope estimates. The estimated relationship between clutch size and nest box base area in study sites with more than a single size of nest box was not significantly different from the relationship using studies with only a single size of nest box. The slope of the relationship between clutch size and nest base area in different species of birds was significantly negatively related to minimum base area, and less so to maximum base area in a given study. These findings are consistent with the hypothesis that bird species have a general reaction norm reflecting the relationship between nest size and clutch size. Further, they suggest that scientists may influence the clutch size decisions of hole-nesting birds through the provisioning of nest boxes of varying sizes. PMID:25478150

Variation in clutch size in relation to nest size in birds.

PubMed

Møller, Anders P; Adriaensen, Frank; Artemyev, Alexandr; Bańbura, Jerzy; Barba, Emilio; Biard, Clotilde; Blondel, Jacques; Bouslama, Zihad; Bouvier, Jean-Charles; Camprodon, Jordi; Cecere, Francesco; Charmantier, Anne; Charter, Motti; Cichoń, Mariusz; Cusimano, Camillo; Czeszczewik, Dorota; Demeyrier, Virginie; Doligez, Blandine; Doutrelant, Claire; Dubiec, Anna; Eens, Marcel; Eeva, Tapio; Faivre, Bruno; Ferns, Peter N; Forsman, Jukka T; García-Del-Rey, Eduardo; Goldshtein, Aya; Goodenough, Anne E; Gosler, Andrew G; Góźdź, Iga; Grégoire, Arnaud; Gustafsson, Lars; Hartley, Ian R; Heeb, Philipp; Hinsley, Shelley A; Isenmann, Paul; Jacob, Staffan; Järvinen, Antero; Juškaitis, Rimvydas; Korpimäki, Erkki; Krams, Indrikis; Laaksonen, Toni; Leclercq, Bernard; Lehikoinen, Esa; Loukola, Olli; Lundberg, Arne; Mainwaring, Mark C; Mänd, Raivo; Massa, Bruno; Mazgajski, Tomasz D; Merino, Santiago; Mitrus, Cezary; Mönkkönen, Mikko; Morales-Fernaz, Judith; Morin, Xavier; Nager, Ruedi G; Nilsson, Jan-Åke; Nilsson, Sven G; Norte, Ana C; Orell, Markku; Perret, Philippe; Pimentel, Carla S; Pinxten, Rianne; Priedniece, Ilze; Quidoz, Marie-Claude; Remeš, Vladimir; Richner, Heinz; Robles, Hugo; Rytkönen, Seppo; Senar, Juan Carlos; Seppänen, Janne T; da Silva, Luís P; Slagsvold, Tore; Solonen, Tapio; Sorace, Alberto; Stenning, Martyn J; Török, János; Tryjanowski, Piotr; van Noordwijk, Arie J; von Numers, Mikael; Walankiewicz, Wiesław; Lambrechts, Marcel M

2014-09-01

Nests are structures built to support and protect eggs and/or offspring from predators, parasites, and adverse weather conditions. Nests are mainly constructed prior to egg laying, meaning that parent birds must make decisions about nest site choice and nest building behavior before the start of egg-laying. Parent birds should be selected to choose nest sites and to build optimally sized nests, yet our current understanding of clutch size-nest size relationships is limited to small-scale studies performed over short time periods. Here, we quantified the relationship between clutch size and nest size, using an exhaustive database of 116 slope estimates based on 17,472 nests of 21 species of hole and non-hole-nesting birds. There was a significant, positive relationship between clutch size and the base area of the nest box or the nest, and this relationship did not differ significantly between open nesting and hole-nesting species. The slope of the relationship showed significant intraspecific and interspecific heterogeneity among four species of secondary hole-nesting species, but also among all 116 slope estimates. The estimated relationship between clutch size and nest box base area in study sites with more than a single size of nest box was not significantly different from the relationship using studies with only a single size of nest box. The slope of the relationship between clutch size and nest base area in different species of birds was significantly negatively related to minimum base area, and less so to maximum base area in a given study. These findings are consistent with the hypothesis that bird species have a general reaction norm reflecting the relationship between nest size and clutch size. Further, they suggest that scientists may influence the clutch size decisions of hole-nesting birds through the provisioning of nest boxes of varying sizes.

Influence of olfactory and visual cover on nest site selection and nest success for grassland-nesting birds.

PubMed

Fogarty, Dillon T; Elmore, R Dwayne; Fuhlendorf, Samuel D; Loss, Scott R

2017-08-01

Habitat selection by animals is influenced by and mitigates the effects of predation and environmental extremes. For birds, nest site selection is crucial to offspring production because nests are exposed to extreme weather and predation pressure. Predators that forage using olfaction often dominate nest predator communities; therefore, factors that influence olfactory detection (e.g., airflow and weather variables, including turbulence and moisture) should influence nest site selection and survival. However, few studies have assessed the importance of olfactory cover for habitat selection and survival. We assessed whether ground-nesting birds select nest sites based on visual and/or olfactory cover. Additionally, we assessed the importance of visual cover and airflow and weather variables associated with olfactory cover in influencing nest survival. In managed grasslands in Oklahoma, USA, we monitored nests of Northern Bobwhite ( Colinus virginianus ), Eastern Meadowlark ( Sturnella magna ), and Grasshopper Sparrow ( Ammodramus savannarum ) during 2015 and 2016. To assess nest site selection, we compared cover variables between nests and random points. To assess factors influencing nest survival, we used visual cover and olfactory-related measurements (i.e., airflow and weather variables) to model daily nest survival. For nest site selection, nest sites had greater overhead visual cover than random points, but no other significant differences were found. Weather variables hypothesized to influence olfactory detection, specifically precipitation and relative humidity, were the best predictors of and were positively related to daily nest survival. Selection for overhead cover likely contributed to mitigation of thermal extremes and possibly reduced detectability of nests. For daily nest survival, we hypothesize that major nest predators focused on prey other than the monitored species' nests during high moisture conditions, thus increasing nest survival on these days. Our study highlights how mechanistic approaches to studying cover informs which dimensions are perceived and selected by animals and which dimensions confer fitness-related benefits.

Testing common assumptions in studies of songbird nest success

USGS Publications Warehouse

Streby, Henry M.; Andersen, David

2013-01-01

We studied Ovenbird Seiurus aurocapilla and Golden-winged Warbler Vermivora chrysopterapopulations in northern Minnesota, USA, to test two common assumptions in studies of songbird nest success: (1) that the condition of an empty nest on or near its expected fledge date is an indicator of nest fate; and (2) that the presence of a fledgling or family group within a territory confirms a successful nest in that territory. We monitored the condition of nests and used radiotelemetry to monitor juveniles through the expected fledging date and early post-fledging period. Of nests that contained nestlings 1–2 days before the expected fledge date, fates were misidentified using nest condition alone for 9.5% of Ovenbird nests, but those misidentifications were made in both directions (succeeded or failed), yielding only a small bias in estimated nest success. However, 20% of Golden-winged Warbler nests were misidentified as successful using nest condition during the final visit interval, biasing the nest success estimate upward by 21–28% depending on the treatment of uncertain nest fates. Fledgling Ovenbirds from 58% of nests travelled beyond their natal territory within 24 h, rising to 98% after 5 days, and those fledglings travelled up to 390 m from nests within 10 days of fledging. Fledgling Golden-winged Warblers from 13% of nests travelled beyond their natal territory within 24 h, rising to 85% after 5 days, and those fledglings travelled up to 510 m from nests within 10 days of fledging. We conclude that nest condition and fledgling presence can be misleading indicators of nest fate, probably commonly biasing nest success estimates upward, and we recommend that these assumptions should be tested in additional species.

Adaptive latitudinal variation in Common Blackbird Turdus merula nest characteristics

PubMed Central

Mainwaring, Mark C; Deeming, D Charles; Jones, Chris I; Hartley, Ian R

2014-01-01

Nest construction is taxonomically widespread, yet our understanding of adaptive intraspecific variation in nest design remains poor. Nest characteristics are expected to vary adaptively in response to predictable variation in spring temperatures over large spatial scales, yet such variation in nest design remains largely overlooked, particularly amongst open-cup-nesting birds. Here, we systematically examined the effects of latitudinal variation in spring temperatures and precipitation on the morphology, volume, composition, and insulatory properties of open-cup-nesting Common Blackbirds’ Turdus merula nests to test the hypothesis that birds living in cooler environments at more northerly latitudes would build better insulated nests than conspecifics living in warmer environments at more southerly latitudes. As spring temperatures increased with decreasing latitude, the external diameter of nests decreased. However, as nest wall thickness also decreased, there was no variation in the diameter of the internal nest cups. Only the mass of dry grasses within nests decreased with warmer temperatures at lower latitudes. The insulatory properties of nests declined with warmer temperatures at lower latitudes and nests containing greater amounts of dry grasses had higher insulatory properties. The insulatory properties of nests decreased with warmer temperatures at lower latitudes, via changes in morphology (wall thickness) and composition (dry grasses). Meanwhile, spring precipitation did not vary with latitude, and none of the nest characteristics varied with spring precipitation. This suggests that Common Blackbirds nesting at higher latitudes were building nests with thicker walls in order to counteract the cooler temperatures. We have provided evidence that the nest construction behavior of open-cup-nesting birds systematically varies in response to large-scale spatial variation in spring temperatures. PMID:24683466

Adaptive latitudinal variation in Common Blackbird Turdus merula nest characteristics.

PubMed

Mainwaring, Mark C; Deeming, D Charles; Jones, Chris I; Hartley, Ian R

2014-03-01

Nest construction is taxonomically widespread, yet our understanding of adaptive intraspecific variation in nest design remains poor. Nest characteristics are expected to vary adaptively in response to predictable variation in spring temperatures over large spatial scales, yet such variation in nest design remains largely overlooked, particularly amongst open-cup-nesting birds. Here, we systematically examined the effects of latitudinal variation in spring temperatures and precipitation on the morphology, volume, composition, and insulatory properties of open-cup-nesting Common Blackbirds' Turdus merula nests to test the hypothesis that birds living in cooler environments at more northerly latitudes would build better insulated nests than conspecifics living in warmer environments at more southerly latitudes. As spring temperatures increased with decreasing latitude, the external diameter of nests decreased. However, as nest wall thickness also decreased, there was no variation in the diameter of the internal nest cups. Only the mass of dry grasses within nests decreased with warmer temperatures at lower latitudes. The insulatory properties of nests declined with warmer temperatures at lower latitudes and nests containing greater amounts of dry grasses had higher insulatory properties. The insulatory properties of nests decreased with warmer temperatures at lower latitudes, via changes in morphology (wall thickness) and composition (dry grasses). Meanwhile, spring precipitation did not vary with latitude, and none of the nest characteristics varied with spring precipitation. This suggests that Common Blackbirds nesting at higher latitudes were building nests with thicker walls in order to counteract the cooler temperatures. We have provided evidence that the nest construction behavior of open-cup-nesting birds systematically varies in response to large-scale spatial variation in spring temperatures.

Site selection and nest survival of the Bar-Headed Goose (Anser indicus) on the Mongolian Plateau

USGS Publications Warehouse

Batbayar, Nyambayar; Takekawa, John Y.; Natsagdorj, Tseveenmyadag; Spragens, Kyle A.; Xiao, Xiamgming

2014-01-01

Waterbirds breeding on the Mongolian Plateau in Central Asia must find suitable wetland areas for nesting in a semiarid region characterized by highly variable water conditions. The first systematic nesting study of a waterbird dependent on this region for breeding was conducted on the Bar-headed Goose (Anser indicus). The purpose of this study was to document Bar-headed Goose nesting locations, characterize nests and nesting strategies, and estimate daily nest survival (n = 235 nests) from eight areas of west-central Mongolia across three summers (2009–2011) using a modified Mayfield estimator. Bar-headed Goose daily nest survival ranged from 0.94 to 0.98, with a 3-year average nest success of 42.6% during incubation. Bar-headed Geese were found to primarily nest on isolated pond and lake islands as previously reported, but were also documented regularly, though less frequently, along rocky cliffs in several regions of west-central Mongolia. Daily nest survival was higher for cliff nests than for island nests. Information-theoretic models indicated that nest survival decreased with nest age and varied annually with changing environmental conditions. Results of this study suggest that while Bar-headed Geese primarily rely on nesting island sites these sites may be more susceptible to anthropogenic disturbance and predation events influenced by seasonal variation in environmental conditions, and that higher daily nest survival values documented for the less frequent cliff nest strategy may provide an important alternative strategy during poor island nest success years. Thus, conservation efforts for this and other waterbird species in the semiarid region should be focused on conserving nesting islands and protecting them from disturbance in areas of high livestock densities experiencing a rapidly warming climate.

Identifying predators and fates of grassland passerine nests using miniature video cameras

USGS Publications Warehouse

Pietz, Pamela J.; Granfors, Diane A.

2000-01-01

Nest fates, causes of nest failure, and identities of nest predators are difficult to determine for grassland passerines. We developed a miniature video-camera system for use in grasslands and deployed it at 69 nests of 10 passerine species in North Dakota during 1996-97. Abandonment rates were higher at nests 1 day or night (22-116 hr) at 6 nests, 5 of which were depredated by ground squirrels or mice. For nests without cameras, estimated predation rates were lower for ground nests than aboveground nests (P = 0.055), but did not differ between open and covered nests (P = 0.74). Open and covered nests differed, however, when predation risk (estimated by initial-predation rate) was examined separately for day and night using camera-monitored nests; the frequency of initial predations that occurred during the day was higher for open nests than covered nests (P = 0.015). Thus, vulnerability of some nest types may depend on the relative importance of nocturnal and diurnal predators. Predation risk increased with nestling age from 0 to 8 days (P = 0.07). Up to 15% of fates assigned to camera-monitored nests were wrong when based solely on evidence that would have been available from periodic nest visits. There was no evidence of disturbance at nearly half the depredated nests, including all 5 depredated by large mammals. Overlap in types of sign left by different predator species, and variability of sign within species, suggests that evidence at nests is unreliable for identifying predators of grassland passerines.

Sorting it out: bedding particle size and nesting material processing method affect nest complexity.

PubMed

Robinson-Junker, Amy; Morin, Amelia; Pritchett-Corning, Kathleen; Gaskill, Brianna N

2017-04-01

As part of routine husbandry, an increasing number of laboratory mice receive nesting material in addition to standard bedding material in their cages. Nesting material improves health outcomes and physiological performance in mice that receive it. Providing usable nesting material uniformly and efficiently to various strains of mice remains a challenge. The aim of this study was to determine how bedding particle size, method of nesting material delivery, and processing of the nesting material before delivery affected nest building in mice of strong (BALB/cAnNCrl) and weak (C3H/HeNCrl) gathering abilities. Our data suggest that processing nesting material through a grinder in conjunction with bedding material, although convenient for provision of bedding with nesting material 'built-in', negatively affects the integrity of the nesting material and subsequent nest-building outcomes. We also found that C3H mice, previously thought to be poor nest builders, built similarly scored nests to those of BALB/c mice when provided with unprocessed nesting material. This was true even when nesting material was mixed into the bedding substrate. We also observed that when nesting material was mixed into the bedding substrate, mice of both strains would sort their bedding by particle size more often than if it were not mixed in. Our findings support the utility of the practice of distributing nesting material mixed in with bedding substrate, but not that of processing the nesting material with the bedding in order to mix them.

Variation in nesting behavior of eight species of spider mites, Stigmaeopsis having sociality

NASA Astrophysics Data System (ADS)

Saito, Yutaka; Zhang, Yan-Xuan; Mori, Kotaro; Ito, Katsura; Sato, Yukie; Chittenden, Anthony R.; Lin, Jian-Zhen; Chae, Younghae; Sakagami, Takane; Sahara, Ken

2016-10-01

Nesting behavior is considered to be an important element of social living in animals. The spider mites belonging to the genus Stigmaeopsis spend their lives within nests produced from silk threads. Several of these species show cooperative sociality, while the others are subsocial. In order to identify the origins of this social behavior, comparisons of nest sizes, nesting behaviors (making nests continuously or separately), and their associated traits (fecal deposition patterns) were made for eight cogeneric Stigmaeopsis species showing various levels of social development. All of these species inhabit bamboo plants (Poaceae). We initially addressed the proximate factor of nest size variation. The variation in nest size of the eight species corresponded well with the variation in dorsal seta sc1 length, suggesting that nest size variation among species may have a genetic basis. The time spent within a nest (nest duration) increased with nest size on the respective host plants. Nest arrangement patterns varied among species showing different sized nests: Large nest builders continuously extended their nests, while middle and small nest-building species built new separate nests, which resulted in different social interaction times among species, and is thought to be closely related to social development. Fecal deposition behaviors also varied among Stigmaeopsis species, suggesting diversity in anti-predatory adaptations. Finally, we discuss how the variation in sociality observed within this genus is likely the result of nest size variation that initially evolved as anti-predator strategies.

Variation in nesting behavior of eight species of spider mites, Stigmaeopsis having sociality.

PubMed

Saito, Yutaka; Zhang, Yan-Xuan; Mori, Kotaro; Ito, Katsura; Sato, Yukie; Chittenden, Anthony R; Lin, Jian-Zhen; Chae, Younghae; Sakagami, Takane; Sahara, Ken

2016-10-01

Nesting behavior is considered to be an important element of social living in animals. The spider mites belonging to the genus Stigmaeopsis spend their lives within nests produced from silk threads. Several of these species show cooperative sociality, while the others are subsocial. In order to identify the origins of this social behavior, comparisons of nest sizes, nesting behaviors (making nests continuously or separately), and their associated traits (fecal deposition patterns) were made for eight cogeneric Stigmaeopsis species showing various levels of social development. All of these species inhabit bamboo plants (Poaceae). We initially addressed the proximate factor of nest size variation. The variation in nest size of the eight species corresponded well with the variation in dorsal seta sc1 length, suggesting that nest size variation among species may have a genetic basis. The time spent within a nest (nest duration) increased with nest size on the respective host plants. Nest arrangement patterns varied among species showing different sized nests: Large nest builders continuously extended their nests, while middle and small nest-building species built new separate nests, which resulted in different social interaction times among species, and is thought to be closely related to social development. Fecal deposition behaviors also varied among Stigmaeopsis species, suggesting diversity in anti-predatory adaptations. Finally, we discuss how the variation in sociality observed within this genus is likely the result of nest size variation that initially evolved as anti-predator strategies.

Effects of nest density, location, and timing on breeding success of Caspian Terns

USGS Publications Warehouse

Antolos, Michelle; Roby, D.D.; Lyons, Donald E.; Anderson, Scott K.; Collis, K.

2006-01-01

One of the proposed benefits of colonial nesting in birds is the protection afforded against avian predators. This advantage may be counter-balanced by the negative effects of intraspecific aggression on breeding success. Effects of nest density, nest location within the colony, and timing of nest initiation on productivity of Caspian Terns (Sterna caspia) were investigated on Crescent Island in the mid-Columbia River, Washington, USA. In the absence of intense nest predation at the Crescent Island tern colony, it was hypothesized that nest density would be negatively associated with productivity. A rangefinder was used to determine spatial distribution of Caspian Tern nests, and these data used to calculate nest characteristics (nest density, nearest neighbor distance, and distance to colony edge) for a randomly-selected subset of nests monitored for nest chronology and productivity. Productivity did not differ between nests in high- and low-density areas of the colony, and was positively associated with earlier nest initiation. Early nests were more productive, were located in areas of higher nest density, and were further from the colony edge than late nests. The strong effect of timing may have been attributable to seasonal declines in prey resources for terns at this site. Our results suggest that Caspian Terns nesting at the highest densities observed in this study did not incur immediate reproductive costs, despite increased potential for encounters between chicks and aggressive conspecific adults.

The digital step edge

NASA Technical Reports Server (NTRS)

Haralick, R. M.

1982-01-01

The facet model was used to accomplish step edge detection. The essence of the facet model is that any analysis made on the basis of the pixel values in some neighborhood has its final authoritative interpretation relative to the underlying grey tone intensity surface of which the neighborhood pixel values are observed noisy samples. Pixels which are part of regions have simple grey tone intensity surfaces over their areas. Pixels which have an edge in them have complex grey tone intensity surfaces over their areas. Specially, an edge moves through a pixel only if there is some point in the pixel's area having a zero crossing of the second directional derivative taken in the direction of a non-zero gradient at the pixel's center. To determine whether or not a pixel should be marked as a step edge pixel, its underlying grey tone intensity surface was estimated on the basis of the pixels in its neighborhood.

Data acquisition system

DOEpatents

Shapiro, Stephen L.; Mani, Sudhindra; Atlas, Eugene L.; Cords, Dieter H. W.; Holbrook, Britt

1997-01-01

A data acquisition circuit for a particle detection system that allows for time tagging of particles detected by the system. The particle detection system screens out background noise and discriminate between hits from scattered and unscattered particles. The detection system can also be adapted to detect a wide variety of particle types. The detection system utilizes a particle detection pixel array, each pixel containing a back-biased PIN diode, and a data acquisition pixel array. Each pixel in the particle detection pixel array is in electrical contact with a pixel in the data acquisition pixel array. In response to a particle hit, the affected PIN diodes generate a current, which is detected by the corresponding data acquisition pixels. This current is integrated to produce a voltage across a capacitor, the voltage being related to the amount of energy deposited in the pixel by the particle. The current is also used to trigger a read of the pixel hit by the particle.

PixelLearn

NASA Technical Reports Server (NTRS)

Mazzoni, Dominic; Wagstaff, Kiri; Bornstein, Benjamin; Tang, Nghia; Roden, Joseph

2006-01-01

PixelLearn is an integrated user-interface computer program for classifying pixels in scientific images. Heretofore, training a machine-learning algorithm to classify pixels in images has been tedious and difficult. PixelLearn provides a graphical user interface that makes it faster and more intuitive, leading to more interactive exploration of image data sets. PixelLearn also provides image-enhancement controls to make it easier to see subtle details in images. PixelLearn opens images or sets of images in a variety of common scientific file formats and enables the user to interact with several supervised or unsupervised machine-learning pixel-classifying algorithms while the user continues to browse through the images. The machinelearning algorithms in PixelLearn use advanced clustering and classification methods that enable accuracy much higher than is achievable by most other software previously available for this purpose. PixelLearn is written in portable C++ and runs natively on computers running Linux, Windows, or Mac OS X.

Individual variation in prelaying behaviour and the incidence of floor eggs.

PubMed

Cooper, J J; Appleby, M C

1996-05-01

1. Floor eggs are a problem in non-cage systems for laying hens, as they require secondary egg collecting. Failure to lay in a well-defined nest site may also be a welfare problem for the hens, but only if their nesting motivation has been thwarted. We investigated the relationships between a hen's prelaying behaviour and its tendency to lay on the floor by recording the behaviour of 20 hens housed individually in wire cages with single littered nest boxes. 3. Most floor eggs (80%) were laid by the same 6 hens. These 6 "floor-layers" performed more nest seeking behaviour, less nest-building behaviour and less sitting prior to oviposition than the 14 hens that consistently laid in nest boxes. 4. The incidence of floor eggs declined with age. Both nest and floor laying hens performed less nest seeking behaviour with age. Floor layers, however, increased their performance of nesting behaviour, whilst nest layers performed less nesting behaviour with age. 5. Floor laying hens behaved as if they found the nest box less attractive than nest-laying hens; perhaps because they had lower nesting motivation, or perhaps because their nesting motivation was as high, but they less readily perceived the nest box as an appropriate nest site.

Conservation significance of alternative nests of golden eagles

Treesearch

Brian A. Millsap; Teryl G. Grubb; Robert K. Murphy; Ted Swem; James W. Watson

2015-01-01

Golden eagles (Aquila chrysaetos) are long-lived raptors that maintain nesting territories that may be occupied for a century or longer. Within occupied nesting territories there is one nest in which eagles lay their eggs in a given year (i.e., the used nest), but there are usually other nests (i.e., alternative nests). Conservation plans often protect used nests, but...

Comparative nest-site habitat of painted redstarts and red-faced warblers in the Madrean Sky Islands of southeastern Arizona

Treesearch

Joseph L. Ganey; William M. Block; Jamie S. Sanderlin; Jose M. Iniguez

2015-01-01

Conservation of avian species requires understanding their nesting habitat requirements. We compared 3 aspects of habitat at nest sites (topographic characteristics of nest sites, nest placement within nest sites, and canopy stratification within nest sites) of 2 related species of ground-nesting warblers (Red-faced Warblers, Cardellina rubrifrons, n = 17...

Predators of Greater Sage-Grouse nests identified by video monitoring

USGS Publications Warehouse

Coates, P.S.; Connelly, J.W.; Delehanty, D.J.

2008-01-01

Nest predation is the primary cause of nest failure for Greater Sage-Grouse (Centrocercus urophasianus), but the identity of their nest predators is often uncertain. Confirming the identity of these predators may be useful in enhancing management strategies designed to increase nest success. From 2002 to 2005, we monitored 87 Greater Sage-Grouse nests (camera, N = 55; no camera, N = 32) in northeastern Nevada and south-central Idaho and identified predators at 17 nests, with Common Ravens (Corvus corax) preying on eggs at 10 nests and American badgers (Taxidea taxis) at seven. Rodents were frequently observed at grouse nests, but did not prey on grouse eggs. Because sign left by ravens and badgers was often indistinguishable following nest predation, identifying nest predators based on egg removal, the presence of egg shells, or other sign was not possible. Most predation occurred when females were on nests. Active nest defense by grouse was rare and always unsuccessful. Continuous video monitoring of Sage-Grouse nests permitted unambiguous identification of nest predators. Additional monitoring studies could help improve our understanding of the causes of Sage-Grouse nest failure in the face of land-use changes in the Intermountain West. ?? 2008 Association of Field Ornithologists.

Frequency of nest use by golden eagles in southwestern Idaho

USGS Publications Warehouse

Kochert, Michael N.; Steenhof, Karen

2012-01-01

We studied nest use by Golden Eagles (Aquila chrysaetos) from 1966 to 2011 to assess nest reuse within territories, ascertain the length of time that elapses between uses of nests, and test the hypotheses that reproductive success and adult turnover influence nest switching. Golden Eagles used 454 nests in 66 territories and used individual nests 1 to 26 times during 45 continuous years of observation. Time between reuse ranged from 1 to 39 yr. Distances between nearest adjacent alternative nests within territories ranged between 5 times. Two nests were unused for 21 and 27 yr after 1971 before being used every 1 to 3 yr thereafter. Eagles used 43% of the nests in series of consecutive years (range 3 to 20 consecutive nestings). Protecting unused nests for a proposed 10 yr after the last known use would not have protected 34% of all 300 nests that were reused during the study and 49% of 37 reused nests monitored consistently for 41 yr. The 102 nests that would not have received protection were in 56 of the 66 territories.

Are traditional methods of determining nest predators and nest fates reliable? An experiment with Wood Thrushes (Hylocichla mustelina) using miniature video cameras

USGS Publications Warehouse

Williams, Gary E.; Wood, P.B.

2002-01-01

We used miniature infrared video cameras to monitor Wood Thrush (Hylocichla mustelina) nests during 1998–2000. We documented nest predators and examined whether evidence at nests can be used to predict predator identities and nest fates. Fifty-six nests were monitored; 26 failed, with 3 abandoned and 23 depredated. We predicted predator class (avian, mammalian, snake) prior to review of video footage and were incorrect 57% of the time. Birds and mammals were underrepresented whereas snakes were over-represented in our predictions. We documented ≥9 nest-predator species, with the southern flying squirrel (Glaucomys volans) taking the most nests (n = 8). During 2000, we predicted fate (fledge or fail) of 27 nests; 23 were classified correctly. Traditional methods of monitoring nests appear to be effective for classifying success or failure of nests, but ineffective at classifying nest predators.

Topographica: Building and Analyzing Map-Level Simulations from Python, C/C++, MATLAB, NEST, or NEURON Components

PubMed Central

Bednar, James A.

2008-01-01

Many neural regions are arranged into two-dimensional topographic maps, such as the retinotopic maps in mammalian visual cortex. Computational simulations have led to valuable insights about how cortical topography develops and functions, but further progress has been hindered by the lack of appropriate tools. It has been particularly difficult to bridge across levels of detail, because simulators are typically geared to a specific level, while interfacing between simulators has been a major technical challenge. In this paper, we show that the Python-based Topographica simulator makes it straightforward to build systems that cross levels of analysis, as well as providing a common framework for evaluating and comparing models implemented in other simulators. These results rely on the general-purpose abstractions around which Topographica is designed, along with the Python interfaces becoming available for many simulators. In particular, we present a detailed, general-purpose example of how to wrap an external spiking PyNN/NEST simulation as a Topographica component using only a dozen lines of Python code, making it possible to use any of the extensive input presentation, analysis, and plotting tools of Topographica. Additional examples show how to interface easily with models in other types of simulators. Researchers simulating topographic maps externally should consider using Topographica's analysis tools (such as preference map, receptive field, or tuning curve measurement) to compare results consistently, and for connecting models at different levels. This seamless interoperability will help neuroscientists and computational scientists to work together to understand how neurons in topographic maps organize and operate. PMID:19352443

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kay, Randolph R; Campbell, David V; Shinde, Subhash L

A modular, scalable focal plane array is provided as an array of integrated circuit dice, wherein each die includes a given amount of modular pixel array circuitry. The array of dice effectively multiplies the amount of modular pixel array circuitry to produce a larger pixel array without increasing die size. Desired pixel pitch across the enlarged pixel array is preserved by forming die stacks with each pixel array circuitry die stacked on a separate die that contains the corresponding signal processing circuitry. Techniques for die stack interconnections and die stack placement are implemented to ensure that the desired pixel pitchmore » is preserved across the enlarged pixel array.« less

A new 9T global shutter pixel with CDS technique

NASA Astrophysics Data System (ADS)

Liu, Yang; Ma, Cheng; Zhou, Quan; Wang, Xinyang

2015-04-01

Benefiting from motion blur free, Global shutter pixel is very widely used in the design of CMOS image sensors for high speed applications such as motion vision, scientifically inspection, etc. In global shutter sensors, all pixel signal information needs to be stored in the pixel first and then waiting for readout. For higher frame rate, we need very fast operation of the pixel array. There are basically two ways for the in pixel signal storage, one is in charge domain, such as the one shown in [1], this needs complicated process during the pixel fabrication. The other one is in voltage domain, one example is the one in [2], this pixel is based on the 4T PPD technology and normally the driving of the high capacitive transfer gate limits the speed of the array operation. In this paper we report a new 9T global shutter pixel based on 3-T partially pinned photodiode (PPPD) technology. It incorporates three in-pixel storage capacitors allowing for correlated double sampling (CDS) and pipeline operation of the array (pixel exposure during the readout of the array). Only two control pulses are needed for all the pixels at the end of exposure which allows high speed exposure control.

Do Predation Rates on Artificial Nests Accurately Reflect Predation Rates on Natural Bird Nests?

Treesearch

David I. King; Richard M. DeGraaf; Curtice R. Griffin; Thomas J. Maier

1999-01-01

Artificial nests are widely used in avian field studies. However, it is unclear how well predation rates on artificial nests reflect predation rates on natural nests. Therefore, we compared survival rates of artificial nests (unused natural nests baited with House Sparrow eggs) with survival rates of active bird nests in the same habitat at the same sites. Survival...

Contrasting nest survival patterns for ducks and songbirds in northern mixed-grass prairie

USGS Publications Warehouse

Grant, Todd; Shaffer, Terry L.; Madden, Elizabeth M.; Nenneman, Melvin P.

2017-01-01

Management actions intended to protect or improve habitat for ducks may benefit grassland-nesting passerines, but scant information is available to explore this assumption. During 1998–2003, we examined nest survival of ducks and songbirds to determine whether effects of prescribed fire and other habitat features (e.g., shrub cover and distance to habitat edges) were similar for ducks and passerines breeding in North Dakota. We used the logistic-exposure method to estimate survival of duck and songbird nests (n = 3,171). We used an information-theoretic approach to identify factors that most influenced nest survival. Patterns of nest survival were markedly different between taxonomic groups. For ducks, nest survival was greater during the first postfire nesting season (daily survival rate [DSR] = 0.957, 85% CI = 0.951–0.963), relative to later postfire nesting seasons (DSR = 0.946, 85% CI = 0.942–0.950). Furthermore duck nest survival and nest densities were inversely related. Duck nest survival also was greater as shrub cover decreased and as distance from cropland and wetland edges increased. Passerines had lower nest survival during the first postfire nesting season (DSR = 0.934, 85% CI = 0.924–0.944), when densities also were low compared to subsequent postfire nesting seasons (DSR = 0.947, 85% CI = 0.944–0.950). Parasitism by brown-headed cowbirds (Molothrus ater) reduced passerine nest survival and this effect was more pronounced during the first postfire nesting season compared to subsequent nesting seasons. Passerine nest survival was greater as shrub cover decreased and perhaps for more concealed nests. Duck and songbird nest survival rates were not correlated during this study and for associated studies that examined additional variables using the same dataset, suggesting that different mechanisms influenced their survival. Based on our results, ducks should not be considered direct surrogates for passerines when predicting effects of prescribed fire, shrub cover, and habitat edges on nest survival.

Spatiotemporal patterns of duck nest density and predation risk: a multi-scale analysis of 18 years and more than 10,000 nests

USGS Publications Warehouse

Ringelman, Kevin M.; Eadie, John M.; Ackerman, Joshua T.; Sih, Andrew; Loughman, Daniel L.; Yarris, Gregory S.; Oldenburger, Shaun L.; McLandress, M. Robert

2017-01-01

Many avian species are behaviorally-plastic in selecting nest sites, and may shift to new locations or habitats following an unsuccessful breeding attempt. If there is predictable spatial variation in predation risk, the process of many individuals using prior experience to adaptively change nest sites may scale up to create shifting patterns of nest density at a population level. We used 18 years of waterfowl nesting data to assess whether there were areas of consistently high or low predation risk, and whether low-risk areas increased, and high-risk areas decreased in nest density the following year. We created kernel density maps of successful and unsuccessful nests in consecutive years and found no correlation in predation risk and no evidence for adaptive shifts, although nest density was correlated between years. We also examined between-year correlations in nest density and nest success at three smaller spatial scales: individual nesting fields (10–28 ha), 16-ha grid cells and 4-ha grid cells. Here, results were similar across all scales: we found no evidence for year-to-year correlation in nest success but found strong evidence that nest density was correlated between years, and areas of high nest success increased in nest density the following year. Prior research in this system has demonstrated that areas of high nest density have higher nest success, and taken together, our results suggest that ducks may adaptively select nest sites based on the local density of conspecifics, rather than the physical location of last year's nest. In unpredictable environments, current cues, such as the presence of active conspecific nests, may be especially useful in selecting nest sites. The cues birds use to select breeding locations and successfully avoid predators deserve continued attention, especially in systems of conservation concern.

Nest design in a changing world: great tit Parus major nests from a Mediterranean city environment as a case study.

PubMed

Lambrechts, Marcel M; Charmantier, Anne; Demeyrier, Virginie; Lucas, Annick; Perret, Samuel; Abouladzé, Matthieu; Bonnet, Michel; Canonne, Coline; Faucon, Virginie; Grosset, Stéphanie; le Prado, Gaëlle; Lidon, Frédéric; Noell, Thierry; Pagano, Pascal; Perret, Vincent; Pouplard, Stéphane; Spitaliéry, Rémy; Bernard, Cyril; Perret, Philippe; Blondel, Jacques; Grégoire, Arnaud

2017-12-01

Investigations of urbanization effects on birds have focused mainly on breeding traits expressed after the nest-building stage (e.g. first-egg date, clutch size, breeding success, and offspring characteristics). Urban studies largely ignored how and why the aspects of nest building might be associated with the degree of urbanization. As urban environments are expected to present novel environmental changes relative to rural environments, it is important to evaluate how nest-building behavior is impacted by vegetation modifications associated with urbanization. To examine nest design in a Mediterranean city environment, we allowed urban great tits ( Parus major ) to breed in nest boxes in areas that differed in local vegetation cover. We found that different measures of nest size or mass were not associated with vegetation cover. In particular, nests located adjacent to streets with lower vegetation cover were not smaller or lighter than nests in parks with higher vegetation cover. Nests adjacent to streets contained more pine needles than nests in parks. In addition, in nests adjacent to streets, nests from boxes attached to pine trees contained more pine needles than nests from boxes attached to other trees. We suggest that urban-related alterations in vegetation cover do not directly impose physical limits on nest size in species that are opportunistic in the selection of nesting material. However, nest composition as reflected in the use of pine needles was clearly affected by habitat type and the planted tree species present, which implies that rapid habitat change impacts nest composition. We do not exclude that urbanization might impact other aspects of nest building behaviour not covered in our study (e.g. costs of searching for nest material), and that the strengths of the associations between urbanization and nest structures might differ among study populations or species.

Study of sub-pixel position resolution with time-correlated transient signals in 3D pixelated CdZnTe detectors with varying pixel sizes

NASA Astrophysics Data System (ADS)

Ocampo Giraldo, L.; Bolotnikov, A. E.; Camarda, G. S.; De Geronimo, G.; Fried, J.; Gul, R.; Hodges, D.; Hossain, A.; Ünlü, K.; Vernon, E.; Yang, G.; James, R. B.

2018-03-01

We evaluated the sub-pixel position resolution achievable in large-volume CdZnTe pixelated detectors with conventional pixel patterns and for several different pixel sizes: 2.8 mm, 1.72 mm, 1.4 mm and 0.8 mm. Achieving position resolution below the physical dimensions of pixels (sub-pixel resolution) is a practical path for making high-granularity position-sensitive detectors, <100 μm, using a limited number of pixels dictated by the mechanical constraints and multi-channel readout electronics. High position sensitivity is important for improving the imaging capability of CZT gamma cameras. It also allows for making more accurate corrections of response non-uniformities caused by crystal defects, thus enabling use of standard-grade (unselected) and less expensive CZT crystals for producing large-volume position-sensitive CZT detectors feasible for many practical applications. We analyzed the digitized charge signals from a representative 9 pixels and the cathode, generated using a pulsed-laser light beam focused down to 10 μm (650 nm) to scan over a selected 3 × 3 pixel area. We applied our digital pulse processing technique to the time-correlated signals captured from adjacent pixels to achieve and evaluate the capability for sub-pixel position resolution. As an example, we also demonstrated an application of 3D corrections to improve the energy resolution and positional information of the events for the tested detectors.

Study of sub-pixel position resolution with time-correlated transient signals in 3D pixelated CdZnTe detectors with varying pixel sizes

DOE PAGES

Giraldo, L. Ocampo; Bolotnikov, A. E.; Camarda, G. S.; ...

2017-12-18

Here, we evaluated the sub-pixel position resolution achievable in large-volume CdZnTe pixelated detectors with conventional pixel patterns and for several different pixel sizes: 2.8 mm, 1.72 mm, 1.4 mm and 0.8 mm. Achieving position resolution below the physical dimensions of pixels (sub-pixel resolution) is a practical path for making high-granularity position-sensitive detectors, <100 μμm, using a limited number of pixels dictated by the mechanical constraints and multi-channel readout electronics. High position sensitivity is important for improving the imaging capability of CZT gamma cameras. It also allows for making more accurate corrections of response non-uniformities caused by crystal defects, thus enablingmore » use of standard-grade (unselected) and less expensive CZT crystals for producing large-volume position-sensitive CZT detectors feasible for many practical applications. We analyzed the digitized charge signals from a representative 9 pixels and the cathode, generated using a pulsed-laser light beam focused down to 10 m (650 nm) to scan over a selected 3×3 pixel area. We applied our digital pulse processing technique to the time-correlated signals captured from adjacent pixels to achieve and evaluate the capability for sub-pixel position resolution. As an example, we also demonstrated an application of 3D corrections to improve the energy resolution and positional information of the events for the tested detectors.« less

Study of sub-pixel position resolution with time-correlated transient signals in 3D pixelated CdZnTe detectors with varying pixel sizes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Giraldo, L. Ocampo; Bolotnikov, A. E.; Camarda, G. S.

Here, we evaluated the sub-pixel position resolution achievable in large-volume CdZnTe pixelated detectors with conventional pixel patterns and for several different pixel sizes: 2.8 mm, 1.72 mm, 1.4 mm and 0.8 mm. Achieving position resolution below the physical dimensions of pixels (sub-pixel resolution) is a practical path for making high-granularity position-sensitive detectors, <100 μμm, using a limited number of pixels dictated by the mechanical constraints and multi-channel readout electronics. High position sensitivity is important for improving the imaging capability of CZT gamma cameras. It also allows for making more accurate corrections of response non-uniformities caused by crystal defects, thus enablingmore » use of standard-grade (unselected) and less expensive CZT crystals for producing large-volume position-sensitive CZT detectors feasible for many practical applications. We analyzed the digitized charge signals from a representative 9 pixels and the cathode, generated using a pulsed-laser light beam focused down to 10 m (650 nm) to scan over a selected 3×3 pixel area. We applied our digital pulse processing technique to the time-correlated signals captured from adjacent pixels to achieve and evaluate the capability for sub-pixel position resolution. As an example, we also demonstrated an application of 3D corrections to improve the energy resolution and positional information of the events for the tested detectors.« less

Nest site attributes and temporal patterns of northern flicker nest loss: effects of predation and competition.

PubMed

Fisher, Ryan J; Wiebe, Karen L

2006-04-01

To date, most studies of nest site selection have failed to take into account more than one source of nest loss (or have combined all sources in one analysis) when examining nest site characteristics, leaving us with an incomplete understanding of the potential trade-offs that individuals may face when selecting a nest site. Our objectives were to determine whether northern flickers (Colaptes auratus) may experience a trade-off in nest site selection in response to mammalian nest predation and nest loss to a cavity nest competitor (European starling, Sturnus vulgaris). We also document within-season temporal patterns of these two sources of nest loss with the hypothesis that flickers may also be constrained in the timing of reproduction under both predatory and competitive influence. Mammalian predators frequently depredated flicker nests that were: lower to the ground, less concealed by vegetation around the cavity entrance and at the base of the nest tree, closer to coniferous forest edges and in forest clumps with a high percentage of conifer content. Proximity to coniferous edges or coniferous trees increased the probability of nest predation, but nests near conifers were less likely to be lost to starlings. Flickers may thus face a trade-off in nest site selection with respect to safety from predators or competitors. Models suggested that peaks of nest predation and nest loss to eviction occurred at the same time, although a competing model suggested that the peak of nest loss to starlings occurred 5 days earlier than the peak of mammalian predation. Differences in peaks of mammalian predation and loss to starlings may constrain any adjustment in clutch initiation date by flickers to avoid one source of nest loss.

Influence of Nest Box Color and Release Sites on Osmia lignaria (Hymenoptera: Megachilidae) Reproductive Success in a Commercial Almond Orchard.

PubMed

Artz, Derek R; Allan, Matthew J; Wardell, Gordon I; Pitts-Singer, Theresa L

2014-12-01

Intensively managed, commercial orchards offer resources for managed solitary bees within agricultural landscapes and provide a means to study bee dispersal patterns, spatial movement, nest establishment, and reproduction. In 2012, we studied the impact of 1) the color of nest boxes covaried with four nest box density treatments and 2) the number of bee release sites covaried with two nest box density treatments on the reproductive success of Osmia lignaria Say in a California almond orchard pollinated by a mixture of O. lignaria and Apis mellifera L. Nest box color influenced the number of nests, total cells, and cells with male and female brood. More nests and cells were produced in light blue nest boxes than in orange or yellow nest boxes. The covariate nest box density also had a significant effect on brood production. The number of release sites did not affect O. lignaria nesting and reproduction, but the number of cavities in nest boxes influenced reproduction. Overall, the color of nest boxes and their distribution, but not the number of release sites, can greatly affect O. lignaria nest establishment and reproductive success in a commercial almond orchard. The ability to locate nesting sites in a homogenous, large orchard landscape may also be facilitated by the higher frequency of nest boxes with low numbers of cavities, and by the ability to detect certain nest box colors that best contrast with the blooming trees. © 2014 Entomological Society of America.

Predaceous ants, beach replenishment, and nest placement by sea turtles.

PubMed

Wetterer, James K; Wood, Lawrence D; Johnson, Chris; Krahe, Holly; Fitchett, Stephanie

2007-10-01

Ants known for attacking and killing hatchling birds and reptiles include the red imported fire ant (Solenopsis invicta Buren), tropical fire ant [Solenopsis geminata (Fabr.)], and little fire ant [Wasmannia auropunctata (Roger)]. We tested whether sea turtle nest placement influenced exposure to predaceous ants. In 2000 and 2001, we surveyed ants along a Florida beach where green turtles (Chelonia mydas L.), leatherbacks (Dermochelys coriacea Vandelli), and loggerheads (Caretta caretta L.) nest. Part of the beach was artificially replenished between our two surveys. As a result, mean beach width experienced by nesting turtles differed greatly between the two nesting seasons. We surveyed 1,548 sea turtle nests (2000: 909 nests; 2001: 639 nests) and found 22 ant species. S. invicta was by far the most common species (on 431 nests); S. geminata and W. auropunctata were uncommon (on 3 and 16 nests, respectively). In 2000, 62.5% of nests had ants present (35.9% with S. invicta), but in 2001, only 30.5% of the nests had ants present (16.4% with S. invicta). Turtle nests closer to dune vegetation had significantly greater exposure to ants. Differences in ant presence on turtle nests between years and among turtle species were closely related to differences in nest placement relative to dune vegetation. Beach replenishment significantly lowered exposure of nests to ants because on the wider beaches turtles nested farther from the dune vegetation. Selective pressures on nesting sea turtles are altered both by the presence of predaceous ants and the practice of beach replenishment.

Waterbird nest density and nest survival in rice fields of southwestern Louisiana

USGS Publications Warehouse

Pierluissi, S.; King, Sammy L.; Kaller, Michael D.

2010-01-01

Rice fields in southwestern Louisiana provide breeding habitat for several waterbird species; however, little is known about nest density, nest survival and the importance of landscape context of rice fields in determining breeding activity. In 2004, 42 rice fields were searched for nests, and 40 were searched in 2005. Land uses surrounding rice fields, including irrigation canals, trees, crawfish ponds, rice, fallow and soybean fields, were examined to determine influence on nest density and survival. Nest densities were 13.5-16.0 nests/km2 for Purple Gallinules (Porphyrio martinica), 3.0-13.7 nests/km2 for Fulvous Whistling Ducks (Dendrocygna bicolor), 2.6-2.8 nests/km2 for Common Moorhens (Gallinula chloropus), 0.3-0.92 nests/km2 for Least Bitterns (Ixobrychus exilisi) and 0-0.6 nests/km2 for Mottled Ducks (Anas fulvigula). Nest survival was 52-79% for Purple Gallinules and 39-43% for Fulvous Whistling Ducks. Apparent nest success of Common Moorhens was 73-75%, 83% for Least Bitterns and 33% for Mottled Ducks. Purple Gallinule and Common Moorhen nest densities were highest in fields with a larger proportion of irrigation canals surrounding rice fields. Purple Gallinule nest densities were greater in fields devoid of trees and landscapes dominated by rice fields and pasture, rather than landscapes containing soybean fields and residential areas. Fulvous Whistling Duck nest densities were higher in agriculturally-dominated landscapes with few trees.

Coping with shifting nest predation refuges by European reed Warblers Acrocephalus scirpaceus.

PubMed

Halupka, Lucyna; Halupka, Konrad; Klimczuk, Ewelina; Sztwiertnia, Hanna

2014-01-01

Predation, the most important source of nest mortality in altricial birds, has been a subject of numerous studies during past decades. However, the temporal dynamics between changing predation pressures and parental responses remain poorly understood. We analysed characteristics of 524 nests of European reed warblers monitored during six consecutive breeding seasons in the same area, and found some support for the shifting nest predation refuge hypothesis. Nest site characteristics were correlated with nest fate, but a nest with the same nest-site attributes could be relatively safe in one season and vulnerable to predation in another. Thus nest predation refuges were ephemeral and there was no between-season consistency in nest predation patterns. Reed warblers that lost their first nests in a given season did not disperse farther for the subsequent reproductive attempt, compared to successful individuals, but they introduced more changes to their second nest sites. In subsequent nests, predation risk remained constant for birds that changed nest-site characteristics, but increased for those that did not. At the between-season temporal scale, individual birds did not perform better with age in terms of reducing nest predation risk. We conclude that the experience acquired in previous years may not be useful, given that nest predation refuges are not stable.

Coping with Shifting Nest Predation Refuges by European Reed Warblers Acrocephalus scirpaceus

PubMed Central

Halupka, Lucyna; Halupka, Konrad; Klimczuk, Ewelina; Sztwiertnia, Hanna

2014-01-01

Predation, the most important source of nest mortality in altricial birds, has been a subject of numerous studies during past decades. However, the temporal dynamics between changing predation pressures and parental responses remain poorly understood. We analysed characteristics of 524 nests of European reed warblers monitored during six consecutive breeding seasons in the same area, and found some support for the shifting nest predation refuge hypothesis. Nest site characteristics were correlated with nest fate, but a nest with the same nest-site attributes could be relatively safe in one season and vulnerable to predation in another. Thus nest predation refuges were ephemeral and there was no between-season consistency in nest predation patterns. Reed warblers that lost their first nests in a given season did not disperse farther for the subsequent reproductive attempt, compared to successful individuals, but they introduced more changes to their second nest sites. In subsequent nests, predation risk remained constant for birds that changed nest-site characteristics, but increased for those that did not. At the between-season temporal scale, individual birds did not perform better with age in terms of reducing nest predation risk. We conclude that the experience acquired in previous years may not be useful, given that nest predation refuges are not stable. PMID:25522327

WE-G-204-03: Photon-Counting Hexagonal Pixel Array CdTe Detector: Optimal Resampling to Square Pixels

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shrestha, S; Vedantham, S; Karellas, A

Purpose: Detectors with hexagonal pixels require resampling to square pixels for distortion-free display of acquired images. In this work, the presampling modulation transfer function (MTF) of a hexagonal pixel array photon-counting CdTe detector for region-of-interest fluoroscopy was measured and the optimal square pixel size for resampling was determined. Methods: A 0.65mm thick CdTe Schottky sensor capable of concurrently acquiring up to 3 energy-windowed images was operated in a single energy-window mode to include ≥10 KeV photons. The detector had hexagonal pixels with apothem of 30 microns resulting in pixel spacing of 60 and 51.96 microns along the two orthogonal directions.more » Images of a tungsten edge test device acquired under IEC RQA5 conditions were double Hough transformed to identify the edge and numerically differentiated. The presampling MTF was determined from the finely sampled line spread function that accounted for the hexagonal sampling. The optimal square pixel size was determined in two ways; the square pixel size for which the aperture function evaluated at the Nyquist frequencies along the two orthogonal directions matched that from the hexagonal pixel aperture functions, and the square pixel size for which the mean absolute difference between the square and hexagonal aperture functions was minimized over all frequencies up to the Nyquist limit. Results: Evaluation of the aperture functions over the entire frequency range resulted in square pixel size of 53 microns with less than 2% difference from the hexagonal pixel. Evaluation of the aperture functions at Nyquist frequencies alone resulted in 54 microns square pixels. For the photon-counting CdTe detector and after resampling to 53 microns square pixels using quadratic interpolation, the presampling MTF at Nyquist frequency of 9.434 cycles/mm along the two directions were 0.501 and 0.507. Conclusion: Hexagonal pixel array photon-counting CdTe detector after resampling to square pixels provides high-resolution imaging suitable for fluoroscopy.« less

Low heritability of nest construction in a wild bird.

PubMed

Järvinen, Pauliina; Kluen, Edward; Brommer, Jon E

2017-10-01

In birds and other taxa, nest construction varies considerably between and within populations. Such variation is hypothesized to have an adaptive (i.e. genetic) basis, but estimates of heritability in nest construction are largely lacking. Here, we demonstrate with data collected over 10 years from 1010 nests built by blue tits in nest-boxes that nest size (height of nest material) and nest composition (proportion of feathers in the nest) are repeatable but only weakly (12-13%) heritable female traits. These findings imply that nest construction may evolve but only if subjected to strong and consistent selection pressures. © 2017 The Author(s).

Use of radio-telemetry to reduce bias in nest searching

USGS Publications Warehouse

Powell, L.A.; Lang, J.D.; Krementz, D.G.; Conroy, M.J.

2005-01-01

We used traditional searching, as well as radio-telemetry, to find 125 Wood Thrush (Hylocichla mustelina) nests during 1994?1996 at the Piedmont National Wildlife Refuge in Georgia, USA. We compared daily nest survival rates for 66 nests of radio-marked birds with 59 nests of birds found through systematic searching. By using radio-telemetry, we found Wood Thrush nests in higher elevation pine habitats, in addition to the more usual hardwood forests with moist soils. We found nests of radio-marked birds farther from streams than nests found by systematic searching. Thirty-two percent of radio-marked birds' nests were found at the tops of slopes, compared to 15% of the nests found by traditional searching. In addition, radio-marked birds generally moved up-slope for re-nesting attempts. Although the distribution of nests found with telemetry and searching varied, daily nest survival did not vary between the two groups. Radio-telemetry provided new information about Wood Thrush nesting habitats. We believe radio-telemetry can be a valuable addition to traditional searching techniques; it has the potential to provide a sample of nests free from a priori habitat biases.

Observer visitation frequency and success of mourning dove nests: A field experiment

USGS Publications Warehouse

Nichols, J.D.; Percival, H.F.; Coon, R.A.; Conroy, M.J.; Hensler, G.L.; Hines, J.E.

1984-01-01

Field studies of nesting success generally require visits by the investigator to the nests under study. Such visits may themselves influence nesting success, however, and this possibility has been discussed and investigated by a number of workers with a variety of bird species. Livezey (1980) reviewed the relevant literature for duck nests and noted that most studies failed to demonstrate differences in nesting success between visited nests and those not visited. Livezey (1980) found in his own work that nest abandonment may have occurred as a result of disturbance by observers but that nest predation was not related to time spent by observers at nests or number of observers approaching nests. Various components of nesting and breeding success in seabirds are thought to be adversely affected by human disturbance and nest visitation (Gillett et al. 1975, Robert and Ralph 1975, Ollason and Dunnet 1980). Upland, ground-nesting species have also been studied (e.g. Stoddard 1931, Evans and Wolfe 1967, Henry 1969, Roseberry and Klimstra 1970, Klimstra and Roseberry 1975), and, although conclusions have varied, a number of these workers found no effect of observers on nest-predation rates.

Beach erosion and nest site selection by the leatherback sea turtle Dermochelys coriacea (Testudines: Dermochelyidae) and implications for management practices at Playa Gandoca, Costa Rica.

PubMed

Spanier, Matthew J

2010-12-01

Leatherback sea turtles (Dermochelys coriacea) nest on dynamic, erosion-prone beaches. Erosive processes and resulting nest loss have long been presumed to be a hindrance to clutch survival. In order to better understand how leatherbacks cope with unstable nesting beaches, I investigated the role of beach erosion in leatherback nest site selection at Playa Gandoca, Costa Rica. I also examined the potential effect of nest relocation, a conservation strategy in place at Playa Gandoca to prevent nest loss to erosion, on the temperature of incubating clutches. I monitored changes in beach structure as a result of erosion at natural nest sites during the time the nest was laid, as well as in subsequent weeks. To investigate slope as a cue for nest site selection, I measured the slope of the beach where turtles ascended from the sea to nest, as well as the slopes at other random locations on the beach for comparison. I examined temperature differences between natural and relocated nest sites with thermocouples placed in the sand at depths typical of leatherback nests. Nests were distributed non-randomly in a clumped distribution along the length of the beach and laid at locations that were not undergoing erosion. The slope at nest sites was significantly different than at randomly chosen locations on the beach. The sand temperature at nest depths was significantly warmer at natural nest sites than at locations of relocated nests. The findings of this study suggest leatherbacks actively select nest sites that are not undergoing erosive processes, with slope potentially being used as a cue for site selection. The relocation of nests appears to be inadvertently cooling the nest environment. Due to the fact that leatherback clutches undergo temperature-dependent sex determination, the relocation of nests may be producing an unnatural male biasing of hatchlings. The results of this study suggest that the necessity of relocation practices, largely in place to protect nests from erosion, should be reevaluated to ensure the proper conservation of this critically endangered species.

Advanced techniques for modeling avian nest survival

USGS Publications Warehouse

Dinsmore, S.J.; White, Gary C.; Knopf, F.L.

2002-01-01

Estimation of avian nest survival has traditionally involved simple measures of apparent nest survival or Mayfield constant-nest-survival models. However, these methods do not allow researchers to build models that rigorously assess the importance of a wide range of biological factors that affect nest survival. Models that incorporate greater detail, such as temporal variation in nest survival and covariates representative of individual nests represent a substantial improvement over traditional estimation methods. In an attempt to improve nest survival estimation procedures, we introduce the nest survival model now available in the program MARK and demonstrate its use on a nesting study of Mountain Plovers (Charadrius montanus Townsend) in Montana, USA. We modeled the daily survival of Mountain Plover nests as a function of the sex of the incubating adult, nest age, year, linear and quadratic time trends, and two weather covariates (maximum daily temperature and daily precipitation) during a six-year study (1995–2000). We found no evidence for yearly differences or an effect of maximum daily temperature on the daily nest survival of Mountain Plovers. Survival rates of nests tended by female and male plovers differed (female rate = 0.33; male rate = 0.49). The estimate of the additive effect for males on nest survival rate was 0.37 (95% confidence limits were 0.03, 0.71) on a logit scale. Daily survival rates of nests increased with nest age; the estimate of daily nest-age change in survival in the best model was 0.06 (95% confidence limits were 0.04, 0.09) on a logit scale. Daily precipitation decreased the probability that the nest would survive to the next day; the estimate of the additive effect of daily precipitation on the nest survival rate was −1.08 (95% confidence limits were −2.12, −0.13) on a logit scale. Our approach to modeling daily nest-survival rates allowed several biological factors of interest to be easily included in nest survival models and allowed us to generate more biologically meaningful estimates of nest survival.

Achieving subpixel resolution with time-correlated transient signals in pixelated CdZnTe gamma-ray sensors using a focused laser beam (Conference Presentation)

NASA Astrophysics Data System (ADS)

Ocampo Giraldo, Luis A.; Bolotnikov, Aleksey E.; Camarda, Giuseppe S.; Cui, Yonggang; De Geronimo, Gianluigi; Gul, Rubi; Fried, Jack; Hossain, Anwar; Unlu, Kenan; Vernon, Emerson; Yang, Ge; James, Ralph B.

2017-05-01

High-resolution position-sensitive detectors have been proposed to correct response non-uniformities in Cadmium Zinc Telluride (CZT) crystals by virtually subdividing the detectors area into small voxels and equalizing responses from each voxel. 3D pixelated detectors coupled with multichannel readout electronics are the most advanced type of CZT devices offering many options in signal processing and enhancing detector performance. One recent innovation proposed for pixelated detectors is to use the induced (transient) signals from neighboring pixels to achieve high sub-pixel position resolution while keeping large pixel sizes. The main hurdle in achieving this goal is the relatively low signal induced on the neighboring pixels because of the electrostatic shielding effect caused by the collecting pixel. In addition, to achieve high position sensitivity one should rely on time-correlated transient signals, which means that digitized output signals must be used. We present the results of our studies to measure the amplitude of the pixel signals so that these can be used to measure positions of the interaction points. This is done with the processing of digitized correlated time signals measured from several adjacent pixels taking into account rise-time and charge-sharing effects. In these measurements we used a focused pulsed laser to generate a 10-micron beam at one milliwatt (650-nm wavelength) over the detector surface while the collecting pixel was moved in cardinal directions. The results include measurements that present the benefits of combining conventional pixel geometry with digital pulse processing for the best approach in achieving sub-pixel position resolution with the pixel dimensions of approximately 2 mm. We also present the sub-pixel resolution measurements at comparable energies from various gamma emitting isotopes.

Nest marking behavior and chemical composition of olfactory cues involved in nest recognition in Megachile rotundata.

PubMed

Guédot, Christelle; Buckner, James S; Hagen, Marcia M; Bosch, Jordi; Kemp, William P; Pitts-Singer, Theresa L

2013-08-01

In-nest observations of the solitary bee, Megachile rotundata (F.), revealed that nesting females apply olfactory cues to nests for nest recognition. On their way in and out of the nest, females drag the abdomen along the entire length of the nest, and sometimes deposit fluid droplets from the tip of the abdomen. The removal of bee-marked sections of the nest resulted in hesitation and searching behavior by females, indicating the loss of olfactory cues used for nest recognition. Chemical analysis of female cuticles and the deposits inside marked nesting tubes revealed the presence of hydrocarbons, wax esters, fatty aldehydes, and fatty alcohol acetate esters. Chemical compositions were similar across tube samples, but proportionally different from cuticular extracts. These findings reveal the importance of lipids as chemical signals for nest recognition and suggest that the nest-marking cues are derived from a source in addition to, or other than, the female cuticle.

Repeatability of nest morphology in African weaver birds.

PubMed

Walsh, Patrick T; Hansell, Mike; Borello, Wendy D; Healy, Susan D

2010-04-23

It is generally assumed that birds build nests according to a genetic 'template', little influenced by learning or memory. One way to confirm the role of genetics in nest building is to assess the repeatability of nest morphology with repeated nest attempts. Solitary weaver birds, which build multiple nests in a single breeding season, are a useful group with which to do this. Here we show that repeatability of nest morphology was low, but significant, in male Southern Masked weaver birds and not significant in the Village weavers. The larger bodied Village weavers built larger nests than did Southern Masked weavers, but body size did not explain variation in Southern Masked weaver nest dimensions. Nests built by the same male in both species got shorter and lighter as more nests were constructed. While these data demonstrate the potential for a genetic component of variation in nest building in solitary weavers, it is also clear that there remains plenty of scope in both of these species for experience to shape nest construction.

Nesting success of Northern Pintails on the coastal Yukon-Kuskokwim Delta, Alaska

USGS Publications Warehouse

Flint, Paul L.; Grand, James B.

1996-01-01

We studied nesting chronology and success of Northern Pintails (Anas acuta) on the coastal Yukon-Kuskokwim Delta, Alaska during the summers of 1991-1993. We found a total of 795 nests during three annual searches of a 27.4 km2 area. Minimum nest density averaged 9.67 nests per km2. Nesting success varied among years and ranged from 43.12% in 1991 to 10.74% in 1993 (average 23.95%). Most nest loss was the result of predation and tidal flooding. Daily nest survival probability declined with nest initiation date in all three years and also varied with nest age in 1992. Clutch size averaged 7.63 ± 0.067 (SE) eggs per nest and was larger than reported for other populations of Northern Pintails. Clutch size declined during the 44-47 day nesting interval at a greater rate than reported for other populations of Northern Pintails. We conclude that sub-arctic and prairie nesting Northern Pintails have similar reproductive potentials.

Time-specific patterns of nest survival for ducks and passerines breeding in North Dakota

USGS Publications Warehouse

Shaffer, Terry L.; Grant, Todd A.

2012-01-01

In many bird species, survival can vary with the age of the nest, with the date a nest was initiated, or among years within the same nesting area. A literature review showed that patterns of survival vary in relation to nest age and date and are often contradictory. Inconsistencies could be a result of temporal variation in the environment or life-history differences among species. We examined patterns of nest survival in relation to nest age, date, and year for several duck and passerine species nesting at a single location in North Dakota during 1998–2003. We predicted that if environment shaped nest survival patterns, then temporal patterns in survival might be similar among three species of upland nesting ducks, and also among three species of grassland passerines nesting at the same site. We expected that survival patterns would differ between ducks and passerines because of relatively disparate life histories and differences in predators that prey on their nests. Nest survival was rarely constant among years, seasonally, or with age of the nest for species that we studied. As predicted, the pattern of survival was similar among duck species, driven mainly by differences in nest survival associated with nest initiation date. The pattern of survival also was similar among passerine species, but nest survival was more influenced by nest age than by date. Our findings suggest that some but not all variation in temporal patterns of nest survival in grassland birds reported in the literature can be explained on the basis of temporal environmental variation. Because patterns of survival were dissimilar among ducks and passerines, it is likely that mechanisms such as predation or brood parasitism have variable influences on productivity of ducks and passerines nesting in the same area. Our results indicate that biologists and managers should not assume that temporal environmental variations, especially factors that affect nest survival, act similarly on all grassland birds.

Lifespan Analyses of Forest Raptor Nests: Patterns of Creation, Persistence and Reuse

PubMed Central

Jiménez-Franco, María V.; Martínez, José E.; Calvo, José F.

2014-01-01

Structural elements for breeding such as nests are key resources for the conservation of bird populations. This is especially true when structural elements require a specific and restricted habitat, or if the construction of nests is costly in time and energy. The availability of nesting-platforms is influenced by nest creation and persistence. In a Mediterranean forest in southeastern Spain, nesting-platforms are the only structural element for three forest-dwelling raptor species: booted eagle Aquila pennata, common buzzard Buteo buteo and northern goshawk Accipiter gentilis. From 1998 to 2013, we tracked the fate of 157 nesting-platforms built and reused by these species with the aim of determining the rates of creation and destruction of nesting-platforms, estimating nest persistence by applying two survival analyses, describing the pattern of nest reuse and testing the effects of nest use on breeding success. Nest creation and destruction rates were low (0.14 and 0.05, respectively). Using Kaplan Meier survival estimates and Cox proportional-hazards regression models we found that median nest longevity was 12 years and that this was not significantly affected by nest characteristics, nest-tree dimensions, nest-builder species, or frequency of use of the platform. We also estimated a transition matrix, considering the different stages of nest occupation (vacant or occupied by one of the focal species), to obtain the fundamental matrix and the average life expectancies of nests, which varied from 17.9 to 19.7 years. Eighty six percent of nests were used in at least one breeding attempt, 67.5% were reused and 17.8% were successively occupied by at least two of the study species. The frequency of nest use had no significant effects on the breeding success of any species. We conclude that nesting-platforms constitute an important resource for forest raptors and that their longevity is sufficiently high to allow their reuse in multiple breeding attempts. PMID:24717935

Lifespan analyses of forest raptor nests: patterns of creation, persistence and reuse.

PubMed

Jiménez-Franco, María V; Martínez, José E; Calvo, José F

2014-01-01

Structural elements for breeding such as nests are key resources for the conservation of bird populations. This is especially true when structural elements require a specific and restricted habitat, or if the construction of nests is costly in time and energy. The availability of nesting-platforms is influenced by nest creation and persistence. In a Mediterranean forest in southeastern Spain, nesting-platforms are the only structural element for three forest-dwelling raptor species: booted eagle Aquila pennata, common buzzard Buteo buteo and northern goshawk Accipiter gentilis. From 1998 to 2013, we tracked the fate of 157 nesting-platforms built and reused by these species with the aim of determining the rates of creation and destruction of nesting-platforms, estimating nest persistence by applying two survival analyses, describing the pattern of nest reuse and testing the effects of nest use on breeding success. Nest creation and destruction rates were low (0.14 and 0.05, respectively). Using Kaplan Meier survival estimates and Cox proportional-hazards regression models we found that median nest longevity was 12 years and that this was not significantly affected by nest characteristics, nest-tree dimensions, nest-builder species, or frequency of use of the platform. We also estimated a transition matrix, considering the different stages of nest occupation (vacant or occupied by one of the focal species), to obtain the fundamental matrix and the average life expectancies of nests, which varied from 17.9 to 19.7 years. Eighty six percent of nests were used in at least one breeding attempt, 67.5% were reused and 17.8% were successively occupied by at least two of the study species. The frequency of nest use had no significant effects on the breeding success of any species. We conclude that nesting-platforms constitute an important resource for forest raptors and that their longevity is sufficiently high to allow their reuse in multiple breeding attempts.

Importance of structural stability to success of mourning dove nests

USGS Publications Warehouse

Coon, R.A.; Nichols, J.D.; Percival, H.F.

1981-01-01

Studies of nest-site selection and nesting habitats often involve a "characterization" of nests and of habitats in which nests are found. Our objective in the present work is to identify nest-site characteristics that are associated with variation in components of Mourning Dove (Zenaida macroura) fitness (e.g. the probability of a nest succeeding), as opposed to simply "characterizing" dove nest sites. If certain nest- site characteristics affect the probability that a nest will succeed, then we suspect that these characteristics will be associated with either concealment (the probability of detection by certain predators) or structural stability (the probability of eggs or entire nests falling to the ground as a result of wind, rain storms, parental activity, etc.). Although other workers agree that structural stability is an important determinant of Mourning Dove nesting success (e.g. McClure 1944: 384; Woolfenden and Rohwer 1969: 59), we are aware of no actual tests of this hypothesis.

Developing a thermal characteristic index for lithology identification using thermal infrared remote sensing data

NASA Astrophysics Data System (ADS)

Wei, Jiali; Liu, Xiangnan; Ding, Chao; Liu, Meiling; Jin, Ming; Li, Dongdong

2017-01-01

In remote sensing petrology fields, studies have mainly concentrated on spectroscopy remote sensing research, and methods to identify minerals and rocks are mainly based on the analysis and enhancement of spectral features. Few studies have reported the application of thermodynamics for lithology identification. This paper aims to establish a thermal characteristic index (TCI) to explore rock thermal behavior responding to defined environmental systems. The study area is located in the northern Qinghai Province, China, on the northern edge of the Qinghai-Tibet Plateau, where mafic-ultramafic rock, quartz-rich rock, alkali granite rock and carbonate rock are well exposed; the pixel samples of these rocks and vegetation were obtained based on relevant indices and geological maps. The scatter plots of TCI indicate that mafic-ultramafic rock and quartz-rich rock can be well extracted from other surface objects when interference from vegetation is lower. On account of the complexity of environmental systems, three periods of TCI were used to construct a three-dimensional scatter plot, named the multi-temporal thermal feature space (MTTFS) model. Then, the Bayes discriminant analysis algorithm was applied to the MTTFS model to extract rocks quantitatively. The classification accuracy of mafic-ultramafic rock is more than 75% in both training data and test data, which suggests TCI can act as a sensitive indicator to distinguish rocks and the MTTFS model can accurately extract mafic-ultramafic rock from other surface objects. We deduce that the use of thermodynamics is promising in lithology identification when an effective index is constructed and an appropriated model is selected.

Groundwater recharge from point to catchment scale

NASA Astrophysics Data System (ADS)

Leterme, Bertrand; Di Ciacca, Antoine; Laloy, Eric; Jacques, Diederik

2016-04-01

Accurate estimation of groundwater recharge is a challenging task as only a few devices (if any) can measure it directly. In this study, we discuss how groundwater recharge can be calculated at different temporal and spatial scales in the Kleine Nete catchment (Belgium). A small monitoring network is being installed, that is aimed to monitor the changes in dominant processes and to address data availability as one goes from the point to the catchment scale. At the point scale, groundwater recharge is estimated using inversion of soil moisture and/or water potential data and stable isotope concentrations (Koeniger et al. 2015). At the plot scale, it is proposed to monitor the discharge of a small drainage ditch in order to calculate the field groundwater recharge. Electrical conductivity measurements are necessary to separate shallow from deeper groundwater contribution to the ditch discharge (see Di Ciacca et al. poster in session HS8.3.4). At this scale, two or three-dimensional process-based vadose zone models will be used to model subsurface flow. At the catchment scale though, using a mechanistic, process-based model to estimate groundwater recharge is debatable (because of, e.g., the presence of numerous drainage ditches, mixed land use pixels, etc.). We therefore investigate to which extent various types of surrogate models can be used to make the necessary upscaling from the plot scale to the scale of the whole Kleine Nete catchment. Ref. Koeniger P, Gaj M, Beyer M, Himmelsbach T (2015) Review on soil water isotope based groundwater recharge estimations. Hydrological Processes, DOI: 10.1002/hyp.10775

The Mars mapper science and mission planning tool

NASA Technical Reports Server (NTRS)

Lo, Martin W.

1993-01-01

The Mars Mapper Program (MOm) is an interactive tool for science and mission design developed for the Mars Observer Mission (MO). MOm is a function of the Planning and Sequencing Element of the MO Ground Data System. The primary users of MOm are members of the science and mission planning teams. Using MOm, the user can display digital maps of Mars in various projections and resolutions ranging from 1 to 256 pixels per degree squared. The user can overlay the maps with ground tracks of the MO spacecraft (S/C) and footprints and swaths of the various instruments on-board the S/C. Orbital and instrument geometric parameters can be computed on demand and displayed on the digital map or plotted in XY-plots. The parameter data can also be saved into files for other uses. MOm is divided into 3 major processes: Generator, Mapper, Plotter. The Generator Process is the main control which spawns all other processes. The processes communicate via sockets. At any one time, only 1 copy of MOm may operate on the system. However, up to 5 copies of each of the major processes may be invoked from the Generator. MOm is developed on the Sun SPARCStation 2GX with menu driven graphical user interface (GUI). The map window and its overlays are mouse-sensitized to permit on-demand calculations of various parameters along an orbit. The program is currently under testing and will be delivered to the MO Mission System Configuration Management for distribution to the MO community in 3/93.

Evaluation of reconstruction techniques in regional cerebral blood flow SPECT using trade-off plots: a Monte Carlo study.

PubMed

Olsson, Anna; Arlig, Asa; Carlsson, Gudrun Alm; Gustafsson, Agnetha

2007-09-01

The image quality of single photon emission computed tomography (SPECT) depends on the reconstruction algorithm used. The purpose of the present study was to evaluate parameters in ordered subset expectation maximization (OSEM) and to compare systematically with filtered back-projection (FBP) for reconstruction of regional cerebral blood flow (rCBF) SPECT, incorporating attenuation and scatter correction. The evaluation was based on the trade-off between contrast recovery and statistical noise using different sizes of subsets, number of iterations and filter parameters. Monte Carlo simulated SPECT studies of a digital human brain phantom were used. The contrast recovery was calculated as measured contrast divided by true contrast. Statistical noise in the reconstructed images was calculated as the coefficient of variation in pixel values. A constant contrast level was reached above 195 equivalent maximum likelihood expectation maximization iterations. The choice of subset size was not crucial as long as there were > or = 2 projections per subset. The OSEM reconstruction was found to give 5-14% higher contrast recovery than FBP for all clinically relevant noise levels in rCBF SPECT. The Butterworth filter, power 6, achieved the highest stable contrast recovery level at all clinically relevant noise levels. The cut-off frequency should be chosen according to the noise level accepted in the image. Trade-off plots are shown to be a practical way of deciding the number of iterations and subset size for the OSEM reconstruction and can be used for other examination types in nuclear medicine.

An Integrated, Observation-based System to Monitor Aboveground Forest Carbon Dynamics in Washington, Oregon, and California

NASA Astrophysics Data System (ADS)

Kennedy, R. E.; Hughes, J.; Neeti, N.; Yang, Z.; Gregory, M.; Roberts, H.; Kane, V. R.; Powell, S. L.; Ohmann, J.

2016-12-01

Because carbon pools and fluxes on wooded landscapes are constrained by their type, age and health, understanding the causes and consequences of carbon change requires frequent observation of forest condition and of disturbance, mortality, and growth processes. As part of USDA and NASA funded efforts, we built empirical monitoring system that integrates time-series Landsat imagery, Forest Inventory and Analysis (FIA) plot data, small-footprint lidar data, and aerial photos to characterize key carbon dynamics in forested ecosystems of Washington, Oregon and California. Here we report yearly biomass estimates for every forested 30 by 30m pixel in the states of Washington, Oregon, and California from 1990 to 2010, including spatially explicit estimates of uncertainty in our yearly predictions. Total biomass at the ecoregion scale agrees well with estimates from FIA plot data alone, currently the only method for reliable monitoring in the forests of the region. Comparisons with estimates of biomass modeled from four small-footprint lidar acquisitions in overlapping portions of our study area show general patterns of agreement between the two types of estimation, but also reveal some disparities in spatial pattern potentially attributable to age and vegetation condition. Using machine-learning techniques based on both Landsat image time series and high resolution aerial photos, we then modeled the agent causing change in biomass for every change event in the region, and report the relative distribution of carbon loss attributable to natural disturbances (primarily fire and insect-related mortality) versus anthropogenic causes (forest management and development).

[Estimation of Hunan forest carbon density based on spectral mixture analysis of MODIS data].

PubMed

Yan, En-ping; Lin, Hui; Wang, Guang-xing; Chen, Zhen-xiong

2015-11-01

With the fast development of remote sensing technology, combining forest inventory sample plot data and remotely sensed images has become a widely used method to map forest carbon density. However, the existence of mixed pixels often impedes the improvement of forest carbon density mapping, especially when low spatial resolution images such as MODIS are used. In this study, MODIS images and national forest inventory sample plot data were used to conduct the study of estimation for forest carbon density. Linear spectral mixture analysis with and without constraint, and nonlinear spectral mixture analysis were compared to derive the fractions of different land use and land cover (LULC) types. Then sequential Gaussian co-simulation algorithm with and without the fraction images from spectral mixture analyses were employed to estimate forest carbon density of Hunan Province. Results showed that 1) Linear spectral mixture analysis with constraint, leading to a mean RMSE of 0.002, more accurately estimated the fractions of LULC types than linear spectral and nonlinear spectral mixture analyses; 2) Integrating spectral mixture analysis model and sequential Gaussian co-simulation algorithm increased the estimation accuracy of forest carbon density to 81.5% from 74.1%, and decreased the RMSE to 5.18 from 7.26; and 3) The mean value of forest carbon density for the province was 30.06 t · hm(-2), ranging from 0.00 to 67.35 t · hm(-2). This implied that the spectral mixture analysis provided a great potential to increase the estimation accuracy of forest carbon density on regional and global level.

Fundamental performance differences between CMOS and CCD imagers, part IV

NASA Astrophysics Data System (ADS)

Janesick, James; Pinter, Jeff; Potter, Robert; Elliott, Tom; Andrews, James; Tower, John; Grygon, Mark; Keller, Dave

2010-07-01

This paper is a continuation of past papers written on fundamental performance differences of scientific CMOS and CCD imagers. New characterization results presented below include: 1). a new 1536 × 1536 × 8μm 5TPPD pixel CMOS imager, 2). buried channel MOSFETs for random telegraph noise (RTN) and threshold reduction, 3) sub-electron noise pixels, 4) 'MIM pixel' for pixel sensitivity (V/e-) control, 5) '5TPPD RING pixel' for large pixel, high-speed charge transfer applications, 6) pixel-to-pixel blooming control, 7) buried channel photo gate pixels and CMOSCCDs, 8) substrate bias for deep depletion CMOS imagers, 9) CMOS dark spikes and dark current issues and 10) high energy radiation damage test data. Discussions are also given to a 1024 × 1024 × 16 um 5TPPD pixel imager currently in fabrication and new stitched CMOS imagers that are in the design phase including 4k × 4k × 10 μm and 10k × 10k × 10 um imager formats.

Is it safe to nest near conspicuous neighbours? Spatial patterns in predation risk associated with the density of American Golden-Plover nests

PubMed Central

Trottier-Paquet, Myriam; Bêty, Joël; Lamarre, Vincent; Lecomte, Nicolas

2016-01-01

Predation is one of the main factors explaining nesting mortality in most bird species. Birds can avoid nest predation or reduce predation pressure by breeding at higher latitude, showing anti-predator behaviour, selecting nest sites protected from predators, and nesting in association with protective species. American Golden-Plovers (Pluvialis dominica) defend their territory by using various warning and distraction behaviours displayed at varying levels of intensity (hereafter “conspicuous behaviour”), as well as more aggressive behaviours such as aerial attacks, but only in some populations. Such antipredator behaviour has the potential to repel predators and thus benefit the neighbouring nests by decreasing their predation risk. Yet, conspicuous behaviour could also attract predators by signalling the presence of a nest. To test for the existence of a protective effect associated with the conspicuous antipredator behaviour of American Golden-Plovers, we studied the influence of proximity to plover nests on predation risk of artificial nests on Igloolik Island (Nunavut, Canada) in July 2014. We predicted that the predation risk of artificial nests would decrease with proximity to and density of plover nests. We monitored 18 plover nests and set 35 artificial nests at 30, 50, 100, 200, and 500 m from seven of those plover nests. We found that the predation risk of artificial nests increases with the density of active plover nests. We also found a significant negative effect of the distance to the nearest active protector nest on predation risk of artificial nests. Understanding how the composition and structure of shorebird communities generate spatial patterns in predation risks represents a key step to better understand the importance of these species of conservation concern in tundra food webs. PMID:27602257

Is it safe to nest near conspicuous neighbours? Spatial patterns in predation risk associated with the density of American Golden-Plover nests.

PubMed

Giroux, Marie-Andrée; Trottier-Paquet, Myriam; Bêty, Joël; Lamarre, Vincent; Lecomte, Nicolas

2016-01-01

Predation is one of the main factors explaining nesting mortality in most bird species. Birds can avoid nest predation or reduce predation pressure by breeding at higher latitude, showing anti-predator behaviour, selecting nest sites protected from predators, and nesting in association with protective species. American Golden-Plovers (Pluvialis dominica) defend their territory by using various warning and distraction behaviours displayed at varying levels of intensity (hereafter "conspicuous behaviour"), as well as more aggressive behaviours such as aerial attacks, but only in some populations. Such antipredator behaviour has the potential to repel predators and thus benefit the neighbouring nests by decreasing their predation risk. Yet, conspicuous behaviour could also attract predators by signalling the presence of a nest. To test for the existence of a protective effect associated with the conspicuous antipredator behaviour of American Golden-Plovers, we studied the influence of proximity to plover nests on predation risk of artificial nests on Igloolik Island (Nunavut, Canada) in July 2014. We predicted that the predation risk of artificial nests would decrease with proximity to and density of plover nests. We monitored 18 plover nests and set 35 artificial nests at 30, 50, 100, 200, and 500 m from seven of those plover nests. We found that the predation risk of artificial nests increases with the density of active plover nests. We also found a significant negative effect of the distance to the nearest active protector nest on predation risk of artificial nests. Understanding how the composition and structure of shorebird communities generate spatial patterns in predation risks represents a key step to better understand the importance of these species of conservation concern in tundra food webs.

Adaptive nest clustering and density-dependent nest survival in dabbling ducks

USGS Publications Warehouse

Ringelman, Kevin M.; Eadie, John M.; Ackerman, Joshua T.

2014-01-01

Density-dependent population regulation is observed in many taxa, and understanding the mechanisms that generate density dependence is especially important for the conservation of heavily-managed species. In one such system, North American waterfowl, density dependence is often observed at continental scales, and nest predation has long been implicated as a key factor driving this pattern. However, despite extensive research on this topic, it remains unclear if and how nest density influences predation rates. Part of this confusion may have arisen because previous studies have studied density-dependent predation at relatively large spatial and temporal scales. Because the spatial distribution of nests changes throughout the season, which potentially influences predator behavior, nest survival may vary through time at relatively small spatial scales. As such, density-dependent nest predation might be more detectable at a spatially- and temporally-refined scale and this may provide new insights into nest site selection and predator foraging behavior. Here, we used three years of data on nest survival of two species of waterfowl, mallards and gadwall, to more fully explore the relationship between local nest clustering and nest survival. Throughout the season, we found that the distribution of nests was consistently clustered at small spatial scales (˜50–400 m), especially for mallard nests, and that this pattern was robust to yearly variation in nest density and the intensity of predation. We demonstrated further that local nest clustering had positive fitness consequences – nests with closer nearest neighbors were more likely to be successful, a result that is counter to the general assumption that nest predation rates increase with nest density.

From one plot to many and from hillslopes to streams: Improving our understanding of catchment hydrology with a multi-scale experimental approach

NASA Astrophysics Data System (ADS)

Blume, Theresa; Weiler, Markus; Angermann, Lisa; Beiter, Daniel; Hassler, Sibylle; Kaplan, Nils; Lieder, Ernestine; Sprenger, Matthias

2017-04-01

Sustainable water resources management needs to be based on sound process understanding. This is especially true in a changing world, where boundary conditions change and models calibrated to the status quo are no longer helpful. There is a general agreement in the hydrologic community that we are in need of a better process understanding and that one of the most promising ways to achieve this is by using nested experimental designs that cover a range of scales. In the here presented study we argue that while we might be able to investigate a certain process at a plot or hillslope in detail, the real power of advancing our understanding lies in site intercomparison and if possible knowledge transfer and generalization. The experimental design of the CAOS observatory is based on sensor clusters measuring ground-, soil and stream water, sap flow and climate variables in 45 hydrological functional units which were chosen from a matrix of site characteristics (geology, land use, hillslope aspect, and topographic positions). This design allows for site intercomparisons that are based on more than one member per class and thus does not only characterize between class differences but also attempts to identify within-class variability. These distributed plot scale investigations offer a large amount of information on plot scale processes and their variability in space and time (e.g. water storage dynamics and patterns, vertical flow processes and vadose zone transit times, transpiration dynamics and patterns). However, if we want to improve our understanding of runoff generation (and thus also of nutrient and contaminant transport and export to the stream) we need to also understand how these plots link up within hillslopes and how and when these hillslopes are connected to the stream. And certainly, this is again most helpful if we do not focus on single sites but attempt experimental designs that aim at intercomparison and generalization. At the same time, the investigation of hillslope-stream connectivity is extremely challenging due to the fact that there is a high 4-dimensional variability of the involved processes and most of them are hidden from view in the subsurface. To tackle this challenge we employed a number of different field methods ranging from hillslope scale irrigation and flow-through experiments, to in depth analyses of near stream piezometer responses and stream reach tracer experiments, and then moving on to the mesoscale catchment with network wide investigations of spatial patterns of stream temperature and electric conductivity as well as of the expansion and shrinkage of the network itself. In this presentation we will provide an overview of the rationale, approach, experimental design and ongoing work, the challenges we encountered and a synthesis of exemplary results.

A “clearcut” case? Brown bear selection of coarse woody debris and carpenter ants on clearcuts

PubMed Central

Frank, Shane C.; Steyaert, Sam M.J.G.; Swenson, Jon E.; Storch, Ilse; Kindberg, Jonas; Barck, Hanna; Zedrosser, Andreas

2015-01-01

Forest management alters habitat characteristics, resulting in various effects among and within species. It is crucial to understand how habitat alteration through forest management (e.g. clearcutting) affects animal populations, particularly with unknown future conditions (e.g. climate change). In Sweden, brown bears (Ursus arctos) forage on carpenter ants (Camponotus herculeanus) during summer, and may select for this food source within clearcuts. To assess carpenter ant occurrence and brown bear selection of carpenter ants, we sampled 6999 coarse woody debris (CWD) items within 1019 plots, of which 902 were within clearcuts (forests ⩽30 years of age) and 117 plots outside clearcuts (forests >30 years of age). We related various CWD and site characteristics to the presence or absence of carpenter ant galleries (nests) and bear foraging sign at three spatial scales: the CWD, plot, and clearcut scale. We tested whether both absolute and relative counts (the latter controlling for the number of CWD items) of galleries and bear sign in plots were higher inside or outside clearcuts. Absolute counts were higher inside than outside clearcuts for galleries (mean counts; inside: 1.8, outside: 0.8). CWD was also higher inside (mean: 6.8) than outside clearcuts (mean: 4.0). However, even after controlling for more CWD inside clearcuts, relative counts were higher inside than outside clearcuts for both galleries (mean counts; inside: 0.3, outside: 0.2) and bear sign (mean counts; inside: 0.03, outside: 0.01). Variables at the CWD scale best explained gallery and bear sign presence than variables at the plot or clearcut level, but bear selection was influenced by clearcut age. CWD circumference was important for both carpenter ant and bear sign presence. CWD hardness was most important for carpenter ant selection. However, the most important predictor for bear sign was the presence or absence of carpenter ant galleries. Bears had a high foraging “success” rate (⩾88%) in foraging CWD where galleries also occurred, which was assessed by summing CWD items with the concurrence of bear sign and galleries, divided by the sum of all CWD with bear sign. Clearcuts appeared to increase the occurrence of a relatively important summer food item, the carpenter ant, on Swedish managed forests for the brown bear. However, the potential benefit of this increase can only be determined from a better understanding of the seasonal and interannual variation of the availability and use of other important brown bear food items, berries (e.g. Vaccinium myrtillus and Empetrum spp.), as well as other primary needs for bears (e.g. secure habitat and denning habitat), within the landscape mosaic of managed forests. PMID:26190890

Bald Eagle Nesting in the Superior National Forest

Treesearch

James P. Mattson; Alfred H. Grewe

1976-01-01

Sixteen years (1959-1974) of bald eagle nesting data representing 102 nests were examined. Nest survey intensity increased in the late 1960''s and was most comprehensive during 1972, 1973, and 1974. Some nests were used for at least 15 years. Most nest trees were white pines, reflecting availability. IN 1974 the number of active and successful nests and...

Eggshell Porosity Provides Insight on Evolution of Nesting in Dinosaurs.

PubMed

Tanaka, Kohei; Zelenitsky, Darla K; Therrien, François

2015-01-01

Knowledge about the types of nests built by dinosaurs can provide insight into the evolution of nesting and reproductive behaviors among archosaurs. However, the low preservation potential of their nesting materials and nesting structures means that most information can only be gleaned indirectly through comparison with extant archosaurs. Two general nest types are recognized among living archosaurs: 1) covered nests, in which eggs are incubated while fully covered by nesting material (as in crocodylians and megapodes), and 2) open nests, in which eggs are exposed in the nest and brooded (as in most birds). Previously, dinosaur nest types had been inferred by estimating the water vapor conductance (i.e., diffusive capacity) of their eggs, based on the premise that high conductance corresponds to covered nests and low conductance to open nests. However, a lack of statistical rigor and inconsistencies in this method render its application problematic and its validity questionable. As an alternative we propose a statistically rigorous approach to infer nest type based on large datasets of eggshell porosity and egg mass compiled for over 120 extant archosaur species and 29 archosaur extinct taxa/ootaxa. The presence of a strong correlation between eggshell porosity and nest type among extant archosaurs indicates that eggshell porosity can be used as a proxy for nest type, and thus discriminant analyses can help predict nest type in extinct taxa. Our results suggest that: 1) covered nests are likely the primitive condition for dinosaurs (and probably archosaurs), and 2) open nests first evolved among non-avian theropods more derived than Lourinhanosaurus and were likely widespread in non-avian maniraptorans, well before the appearance of birds. Although taphonomic evidence suggests that basal open nesters (i.e., oviraptorosaurs and troodontids) were potentially the first dinosaurs to brood their clutches, they still partially buried their eggs in sediment. Open nests with fully exposed eggs only became widespread among Euornithes. A potential co-evolution of open nests and brooding behavior among maniraptorans may have freed theropods from the ground-based restrictions inherent to covered nests and allowed the exploitation of alternate nesting locations. These changes in nesting styles and behaviors thus may have played a role in the evolutionary success of maniraptorans (including birds).

Eggshell Porosity Provides Insight on Evolution of Nesting in Dinosaurs

PubMed Central

2015-01-01

Knowledge about the types of nests built by dinosaurs can provide insight into the evolution of nesting and reproductive behaviors among archosaurs. However, the low preservation potential of their nesting materials and nesting structures means that most information can only be gleaned indirectly through comparison with extant archosaurs. Two general nest types are recognized among living archosaurs: 1) covered nests, in which eggs are incubated while fully covered by nesting material (as in crocodylians and megapodes), and 2) open nests, in which eggs are exposed in the nest and brooded (as in most birds). Previously, dinosaur nest types had been inferred by estimating the water vapor conductance (i.e., diffusive capacity) of their eggs, based on the premise that high conductance corresponds to covered nests and low conductance to open nests. However, a lack of statistical rigor and inconsistencies in this method render its application problematic and its validity questionable. As an alternative we propose a statistically rigorous approach to infer nest type based on large datasets of eggshell porosity and egg mass compiled for over 120 extant archosaur species and 29 archosaur extinct taxa/ootaxa. The presence of a strong correlation between eggshell porosity and nest type among extant archosaurs indicates that eggshell porosity can be used as a proxy for nest type, and thus discriminant analyses can help predict nest type in extinct taxa. Our results suggest that: 1) covered nests are likely the primitive condition for dinosaurs (and probably archosaurs), and 2) open nests first evolved among non-avian theropods more derived than Lourinhanosaurus and were likely widespread in non-avian maniraptorans, well before the appearance of birds. Although taphonomic evidence suggests that basal open nesters (i.e., oviraptorosaurs and troodontids) were potentially the first dinosaurs to brood their clutches, they still partially buried their eggs in sediment. Open nests with fully exposed eggs only became widespread among Euornithes. A potential co-evolution of open nests and brooding behavior among maniraptorans may have freed theropods from the ground-based restrictions inherent to covered nests and allowed the exploitation of alternate nesting locations. These changes in nesting styles and behaviors thus may have played a role in the evolutionary success of maniraptorans (including birds). PMID:26605799

Depredation of common eider, Somateria mollissima, nests on a central Beaufort Sea barrier island: A case where no one wins

USGS Publications Warehouse

Reed, J.A.; Lacroix, D.L.; Flint, Paul L.

2007-01-01

Along the central Beaufort Sea, Pacific Common Eiders (Somateria mollissima v-nigra) nest on unvegetated, barrier islands; often near nesting Glaucous Gulls (Larus hyperboreus). Nest-site choice likely reflects a strategy of predator avoidance: nesting on islands to avoid mammalian predators and near territorial gulls to avoid other avian predators. We observed a nesting colony of Common Eiders from first nest initiation through nesting termination on Egg Island near Prudhoe Bay, Alaska (2002 - 2003). Resident gulls depredated many eider nests, mostly during initiation. All nests failed when an Arctic Fox (Alopex lagopus) visited the island and flushed hens from their nests, exposing the eggs to depredation by the fox and gulls (resident and non-resident). Common Eiders actively defended nests from gulls, but not from foxes. Likely all three species (i.e., eiders, gulls, and foxes) ultimately achieved negligible benefit from their nest-site selection or predatory activity: (a) island nesting provided no safety from mammalian predators for eiders or gulls, (b) for Common Eiders, nesting near gulls increased egg loss, (c) for Glaucous Gulls, nesting near colonial eiders may have reduced nest success by attracting the fox, and (d) for Arctic Foxes, the depredation was of questionable value, as most eggs were cached and probably not recoverable (due to damage from fall storms). Thus, the predator-prey interactions we observed appear to be a case where little or no fitness advantage was realized by any of the species involved.

Breeding phenology of birds: mechanisms underlying seasonal declines in the risk of nest predation.

PubMed

Borgmann, Kathi L; Conway, Courtney J; Morrison, Michael L

2013-01-01

Seasonal declines in avian clutch size are well documented, but seasonal variation in other reproductive parameters has received less attention. For example, the probability of complete brood mortality typically explains much of the variation in reproductive success and often varies seasonally, but we know little about the underlying cause of that variation. This oversight is surprising given that nest predation influences many other life-history traits and varies throughout the breeding season in many songbirds. To determine the underlying causes of observed seasonal decreases in risk of nest predation, we modeled nest predation of Dusky Flycatchers (Empidonax oberholseri) in northern California as a function of foliage phenology, energetic demand, developmental stage, conspecific nest density, food availability for nest predators, and nest predator abundance. Seasonal variation in the risk of nest predation was not associated with seasonal changes in energetic demand, conspecific nest density, or predator abundance. Instead, seasonal variation in the risk of nest predation was associated with foliage density (early, but not late, in the breeding season) and seasonal changes in food available to nest predators. Supplemental food provided to nest predators resulted in a numerical response by nest predators, increasing the risk of nest predation at nests that were near supplemental feeders. Our results suggest that seasonal changes in foliage density and factors associated with changes in food availability for nest predators are important drivers of temporal patterns in risk of avian nest predation.

Breeding Phenology of Birds: Mechanisms Underlying Seasonal Declines in the Risk of Nest Predation

PubMed Central

Borgmann, Kathi L.; Conway, Courtney J.; Morrison, Michael L.

2013-01-01

Seasonal declines in avian clutch size are well documented, but seasonal variation in other reproductive parameters has received less attention. For example, the probability of complete brood mortality typically explains much of the variation in reproductive success and often varies seasonally, but we know little about the underlying cause of that variation. This oversight is surprising given that nest predation influences many other life-history traits and varies throughout the breeding season in many songbirds. To determine the underlying causes of observed seasonal decreases in risk of nest predation, we modeled nest predation of Dusky Flycatchers (Empidonax oberholseri) in northern California as a function of foliage phenology, energetic demand, developmental stage, conspecific nest density, food availability for nest predators, and nest predator abundance. Seasonal variation in the risk of nest predation was not associated with seasonal changes in energetic demand, conspecific nest density, or predator abundance. Instead, seasonal variation in the risk of nest predation was associated with foliage density (early, but not late, in the breeding season) and seasonal changes in food available to nest predators. Supplemental food provided to nest predators resulted in a numerical response by nest predators, increasing the risk of nest predation at nests that were near supplemental feeders. Our results suggest that seasonal changes in foliage density and factors associated with changes in food availability for nest predators are important drivers of temporal patterns in risk of avian nest predation. PMID:23776566

The effects of large beach debris on nesting sea turtles

USGS Publications Warehouse

Fujisaki, Ikuko; Lamont, Margaret M.

2016-01-01

A field experiment was conducted to understand the effects of large beach debris on sea turtle nesting behavior as well as the effectiveness of large debris removal for habitat restoration. Large natural and anthropogenic debris were removed from one of three sections of a sea turtle nesting beach and distributions of nests and false crawls (non-nesting crawls) in pre- (2011–2012) and post- (2013–2014) removal years in the three sections were compared. The number of nests increased 200% and the number of false crawls increased 55% in the experimental section, whereas a corresponding increase in number of nests and false crawls was not observed in the other two sections where debris removal was not conducted. The proportion of nest and false crawl abundance in all three beach sections was significantly different between pre- and post-removal years. The nesting success, the percent of successful nests in total nesting attempts (number of nests + false crawls), also increased from 24% to 38%; however the magnitude of the increase was comparably small because both the number of nests and false crawls increased, and thus the proportion of the nesting success in the experimental beach in pre- and post-removal years was not significantly different. The substantial increase in sea turtle nesting activities after the removal of large debris indicates that large debris may have an adverse impact on sea turtle nesting behavior. Removal of large debris could be an effective restoration strategy to improve sea turtle nesting.

Ants' learning of nest entrance characteristics (Hymenoptera, Formicidae).

PubMed

Cammaerts, M C

2014-02-01

Young workers, experimentally removed from their nest and set in front of it, are not very good at finding the nest entrance and entering the nest. I examined how young ants learn their nest entrance characteristics, dealing only with the entrance sensu stricto, not with its vicinity. I observed that young ants have the innate behavior of trying to exit and re-enter their nest. I found that they are imprinted with the nest entrance odor while they are still living inside their nest and that they learn the visual aspect of their nest entrances, thanks to operant conditioning, when they exit their nest and succeed in re-entering in the course of their first short trips outside.

Estimating populations of nesting brant using aerial videography

USGS Publications Warehouse

Anthony, R. Michael; Anderson, W.H.; Sedinger, J.S.; McDonald, L.L.

1995-01-01

We mounted a video camcorder in a single-engine aircraft to estimate nesting density along 10-m wide strip transects in black brant colonies on the Yukon Delta National Wildlife Refuge, Alaska during 1990-1992. A global positioning system (GPS) receiver was connected to the video recorder and a laptop computer to locate transects and annotate video tape with time and latitude-longitude at 1-second intervals. About 4-5 hours of flight time were required to record 30-40 minutes of video tape needed to survey large (>5,000 nests in > 10 km2)colonies. We conducted ground searches along transects to locate and identify nests for determining detection rates of nests in video images. Counts of nests from video transects were correlated with actual numbers of nests. Resolution of images was sufficient to detect 81% of known nests (with and without incubating females). Of these, 68% were correctly identified as brant nests. The most common misidentification of known nests was failure of viewers to see the nest that the detected bird was incubating. Unattended nests with exposed eggs, down-covered nests, and nesting brant, cackling Canada geese, and emperor geese were identified in video images. Flushing of incubating geese by survey aircraft was not significant. About 10% of known nests were unoccupied in video images compared to 16% unoccupied nests observed from tower blinds during periods without aircraft disturbance.

Monitoring bald eagles using lists of nests: Response to Watts and Duerr

USGS Publications Warehouse

Sauer, John R.; Otto, Mark C.; Kendall, William L.; Zimmerman, Guthrie S.

2011-01-01

The post-delisting monitoring plan for bald eagles (Haliaeetus leucocephalus) roposed use of a dual-frame sample design, in which sampling of known nest sites in combination with additional area-based sampling is used to estimate total number of nesting bald eagle pairs. Watts and Duerr (2010) used data from repeated observations of bald eagle nests in Virginia, USA to estimate a nest turnover rate and used this rate to simulate decline in number of occupied nests in list nests over time. Results of Watts and Duerr suggest that, given the rates of loss of nests from the list of known nest sites in Virginia, the list information will be of little value to sampling unless lists are constantly updated. Those authors criticize the plan for not placing sufficient emphasis on updating and maintaining lists of bald eagle nests. Watts and Duerr's metric of turnover rate does not distinguish detectability or temporary nonuse of nests from permanent loss of nests and likely overestimates turnover rate. We describe a multi-state capture–recapture model that allows appropriate estimation of rates of loss of nests, and we use the model to estimate rates of loss from a sample of nests from Maine, USA. The post-delisting monitoring plan addresses the need to maintain and update the lists of nests, and we show that dual frame sampling is an effective approach for sampling nesting bald eagle populations.

The effect of canopy closure on chimpanzee nest abundance in Lagoas de Cufada National Park, Guinea-Bissau.

PubMed

Sousa, Joana; Casanova, Catarina; Barata, André V; Sousa, Cláudia

2014-04-01

The present study aimed to gather baseline information about chimpanzee nesting and density in Lagoas de Cufada Natural Park (LCNP), in Guinea-Bissau. Old and narrow trails were followed to estimate chimpanzee density through marked-nest counts and to test the effect of canopy closure (woodland savannah, forest with a sparse canopy, and forest with a dense canopy) on nest distribution. Chimpanzee abundance was estimated at 0.79 nest builders/km(2), the lowest among the areas of Guinea-Bissau with currently studied chimpanzee populations. Our data suggest that sub-humid forest with a dense canopy accounts for significantly higher chimpanzee nest abundance (1.50 nests/km of trail) than sub-humid forest with a sparse canopy (0.49 nests/km of trail) or woodland savannah (0.30 nests/km of trail). Dense-canopy forests play an important role in chimpanzee nesting in the patchy and highly humanized landscape of LCNP. The tree species most frequently used for nesting are Dialium guineense (46%) and Elaeis guineensis (28%). E. guineensis contain nests built higher in the canopy, while D. guineense contain nests built at lower heights. Nests observed during baseline sampling and replications suggest seasonal variations in the tree species used for nest building.

Factors influencing predation associated with visits to artificial goose nests

USGS Publications Warehouse

Vacca, M. Michele; Handel, Colleen M.

1988-01-01

Artificial goose nests were used to determine what factors might increase predation after visits to nests of Cackling Canada Geese (Branta canadensis minima). We tested whether leaving the nest uncovered, marking the nest location with a flag, or placing the nest on an island or peninsula would increase the rate of predation. Predators destroyed significantly more of the nests with eggs exposed to view (61%) than of the nests with eggs covered with goose down (35%) (P < 0.05). However, the rate of predation was only slightly higher among nests located on peninsulas than on islands and equal proportions of flagged and unflagged nests were destroyed. We also determined that investigators attracted predators to the study area and caused an increase in predation at uncovered nests immediately after the visit. Covering the eggs with down essentially negated the effect of attracting predators when visiting the nest. Among the 46 nests destroyed, 78% were destroyed by birds and 22% by mammals. Results of our study suggested that visibility of exposed eggs rather than nest markers provided important cues to avian predators and that islands probably provided some refuge from mammalian predators. Investigators can take steps to minimize their impact on nesting success and should incorporate a measure of that impact in their studies.

[Structure characteristics of natural nests and its implication to artificial nest frame design for Ciconia boyciana].

PubMed

Wei, Yi-qing; Cui, Guo-fa

2014-12-01

Artificial nest can improve the breeding success of birds in the field, and it has been proved to be more effective to endangered species. We surveyed the structure characteristics of natural nest and the status of the use of artificial nests for oriental white stork, Ciconia boyciana, in Honghe National Nature Reserve, Heilongjiang Province. Differences were investigated among the structure characteristics of the used and unused artificial nests, and natural nests based on one-way ANOVA. It was observed that significant differences in the diameter of nest branch, the vertical an- gle between nest branch, the height of the jointthe height of the nest above ground exited in different nest types. On account of the structure characteristics of the natural nests of C. boyciana, the suitable diameter of nest pillar for artificial nest frame should be 15.0-25.0 cm with the height of 5.0-12.0 m, which would be better if they were constructed by some acid-resistant materials, e.g., cement. The number of nest stands should be 3-4 individuals with the diameter of 9.0-12.0 cm, the vertical angle of 45 degrees-60 degrees, and the length of 90.0-140.0 cm.

Nest predation risk influences a cavity-nesting passerine during the post-hatching care period

PubMed Central

Yoon, Jongmin; Kim, Byung-Su; Joo, Eun-Jin; Park, Shi-Ryong

2016-01-01

Some nest predators visually assess parental activities to locate a prey nest, whereas parents modify fitness-related traits to reduce the probability of nest predation, and/or nestlings fledge early to escape the risky nest environment. Here, we experimentally tested if the parental and fledging behaviours of oriental tits (Parus minor) that bred in the nest-box varied with cavity conditions associated with nest predation risk during the nestling period. The entrance of experimental nest-boxes was enlarged to create a long-term risk soon after clutch competition. A short-term risk, using simulated playbacks with a coexisting control bird and avian nest predator sound, was simultaneously applied to the nest-boxes whether or not the long-term risk existed. We found that the parents reduced their hourly feeding trips, and the nestlings fledged early with the long-term risk, although the nest mortality of the two nest-box types was low and did not differ. While this study presents a portion of prey–predator interactions with the associated uncertainties, our results highlight that the entrance size of cavities for small hole-nesting birds may play an important role in determining their fitness-related traits depending upon the degree of perceived risk of nest predation. PMID:27553176

Nest predation risk influences a cavity-nesting passerine during the post-hatching care period.

PubMed

Yoon, Jongmin; Kim, Byung-Su; Joo, Eun-Jin; Park, Shi-Ryong

2016-08-24

Some nest predators visually assess parental activities to locate a prey nest, whereas parents modify fitness-related traits to reduce the probability of nest predation, and/or nestlings fledge early to escape the risky nest environment. Here, we experimentally tested if the parental and fledging behaviours of oriental tits (Parus minor) that bred in the nest-box varied with cavity conditions associated with nest predation risk during the nestling period. The entrance of experimental nest-boxes was enlarged to create a long-term risk soon after clutch competition. A short-term risk, using simulated playbacks with a coexisting control bird and avian nest predator sound, was simultaneously applied to the nest-boxes whether or not the long-term risk existed. We found that the parents reduced their hourly feeding trips, and the nestlings fledged early with the long-term risk, although the nest mortality of the two nest-box types was low and did not differ. While this study presents a portion of prey-predator interactions with the associated uncertainties, our results highlight that the entrance size of cavities for small hole-nesting birds may play an important role in determining their fitness-related traits depending upon the degree of perceived risk of nest predation.

Hot pixel generation in active pixel sensors: dosimetric and micro-dosimetric response

NASA Technical Reports Server (NTRS)

Scheick, Leif; Novak, Frank

2003-01-01

The dosimetric response of an active pixel sensor is analyzed. heavy ions are seen to damage the pixel in much the same way as gamma radiation. The probability of a hot pixel is seen to exhibit behavior that is not typical with other microdose effects.

Eggs in the Freezer: Energetic Consequences of Nest Site and Nest Design in Arctic Breeding Shorebirds

PubMed Central

Tulp, Ingrid; Schekkerman, Hans; de Leeuw, Joep

2012-01-01

Birds construct nests for several reasons. For species that breed in the Arctic, the insulative properties of nests are very important. Incubation is costly there and due to an increasing surface to volume ratio, more so in smaller species. Small species are therefore more likely to place their nests in thermally favourable microhabitats and/or to invest more in nest insulation than large species. To test this hypothesis, we examined characteristics of nests of six Arctic breeding shorebird species. All species chose thermally favourable nesting sites in a higher proportion than expected on the basis of habitat availability. Site choice did not differ between species. Depth to frozen ground, measured near the nests, decreased in the course of the season at similar non-species-specific speeds, but this depth increased with species size. Nest cup depth and nest scrape depth (nest cup without the lining) were unrelated to body mass (we applied an exponent of 0.73, to account for metabolic activity of the differently sized species). Cup depth divided by diameter2 was used as a measure of nest cup shape. Small species had narrow and deep nests, while large species had wide shallow nests. The thickness of nest lining varied between 0.1 cm and 7.6 cm, and decreased significantly with body mass. We reconstruct the combined effect of different nest properties on the egg cooling coefficient using previously published quantitative relationships. The predicted effect of nest cup depth and lining depth on heat loss to the frozen ground did not correlate with body mass, but the sheltering effect of nest cup diameter against wind and the effects of lining material on the cooling coefficient increased with body mass. Our results suggest that small arctic shorebirds invest more in the insulation of their nests than large species. PMID:22701596

Timing of nest vegetation measurement may obscure adaptive significance of nest-site characteristics: A simulation study.

PubMed

McConnell, Mark D; Monroe, Adrian P; Burger, Loren Wes; Martin, James A

2017-02-01

Advances in understanding avian nesting ecology are hindered by a prevalent lack of agreement between nest-site characteristics and fitness metrics such as nest success. We posit this is a result of inconsistent and improper timing of nest-site vegetation measurements. Therefore, we evaluated how the timing of nest vegetation measurement influences the estimated effects of vegetation structure on nest survival. We simulated phenological changes in nest-site vegetation growth over a typical nesting season and modeled how the timing of measuring that vegetation, relative to nest fate, creates bias in conclusions regarding its influence on nest survival. We modeled the bias associated with four methods of measuring nest-site vegetation: Method 1-measuring at nest initiation, Method 2-measuring at nest termination regardless of fate, Method 3-measuring at nest termination for successful nests and at estimated completion for unsuccessful nests, and Method 4-measuring at nest termination regardless of fate while also accounting for initiation date. We quantified and compared bias for each method for varying simulated effects, ranked models for each method using AIC, and calculated the proportion of simulations in which each model (measurement method) was selected as the best model. Our results indicate that the risk of drawing an erroneous or spurious conclusion was present in all methods but greater with Method 2 which is the most common method reported in the literature. Methods 1 and 3 were similarly less biased. Method 4 provided no additional value as bias was similar to Method 2 for all scenarios. While Method 1 is seldom practical to collect in the field, Method 3 is logistically practical and minimizes inherent bias. Implementation of Method 3 will facilitate estimating the effect of nest-site vegetation on survival, in the least biased way, and allow reliable conclusions to be drawn.

How to Get the Biggest Bang for Your Buck: Wildlife Monitoring on Shrublands of the Nevada Test Site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Derek Hall, Paul D. Greger

The Nevada Test Site (NTS) covers 1,375 square miles and extends over portions of both the Mojave and Great Basin Deserts. The resulting diverse and complex flora and fauna exhibit elements of both deserts. There are 20 vegetation associations, composed primarily of shrubs, nested within 10 vegetation alliances. Of the more than 1,200 invertebrates and 339 vertebrates found in these shrubland habitats, 267 are considered sensitive or protected/regulated by federal or state laws. Wildlife and wildlife habitat monitoring ensures NTS activities comply with all federal and state laws enacted for the protection of these valuable biological resources. This paper describesmore » the monitoring approach used at this large site. Monitoring techniques include conducting preactivity surveys, repeated sampling of permanent plots, proactively monitoring sensitive species, and collaborating with other agencies and biologists. Ways to make monitoring more efficient and examples of successful monitoring and collaborations are discussed.« less

Low complexity pixel-based halftone detection

NASA Astrophysics Data System (ADS)

Ok, Jiheon; Han, Seong Wook; Jarno, Mielikainen; Lee, Chulhee

2011-10-01

With the rapid advances of the internet and other multimedia technologies, the digital document market has been growing steadily. Since most digital images use halftone technologies, quality degradation occurs when one tries to scan and reprint them. Therefore, it is necessary to extract the halftone areas to produce high quality printing. In this paper, we propose a low complexity pixel-based halftone detection algorithm. For each pixel, we considered a surrounding block. If the block contained any flat background regions, text, thin lines, or continuous or non-homogeneous regions, the pixel was classified as a non-halftone pixel. After excluding those non-halftone pixels, the remaining pixels were considered to be halftone pixels. Finally, documents were classified as pictures or photo documents by calculating the halftone pixel ratio. The proposed algorithm proved to be memory-efficient and required low computation costs. The proposed algorithm was easily implemented using GPU.

Spatial light modulator array with heat minimization and image enhancement features

DOEpatents

Jain, Kanti [Briarcliff Manor, NY; Sweatt, William C [Albuquerque, NM; Zemel, Marc [New Rochelle, NY

2007-01-30

An enhanced spatial light modulator (ESLM) array, a microelectronics patterning system and a projection display system using such an ESLM for heat-minimization and resolution enhancement during imaging, and the method for fabricating such an ESLM array. The ESLM array includes, in each individual pixel element, a small pixel mirror (reflective region) and a much larger pixel surround. Each pixel surround includes diffraction-grating regions and resolution-enhancement regions. During imaging, a selected pixel mirror reflects a selected-pixel beamlet into the capture angle of a projection lens, while the diffraction grating of the pixel surround redirects heat-producing unused radiation away from the projection lens. The resolution-enhancement regions of selected pixels provide phase shifts that increase effective modulation-transfer function in imaging. All of the non-selected pixel surrounds redirect all radiation energy away from the projection lens. All elements of the ESLM are fabricated by deposition, patterning, etching and other microelectronic process technologies.

Assessment of Vegetation Destruction Due to Wenchuan Earthquake and Its Recovery Process Using MODIS Data

NASA Astrophysics Data System (ADS)

Zou, Z.; Xiao, X.

2015-12-01

With a high temporal resolution and a large covering area, MODIS data are particularly useful in assessing vegetation destruction and recovery of a wide range of areas. In this study, MOD13Q1 data of the growing season (Mar. to Nov.) are used to calculate the Maximum NDVI (NDVImax) of each year. This study calculates each pixel's mean and standard deviation of the NDVImaxs in the 8 years before the earthquake. If the pixel's NDVImax of 2008 is two standard deviation smaller than the mean NDVImax, this pixel is detected as a vegetation destructed pixel. For each vegetation destructed pixel, its similar pixels of the same vegetation type are selected within the latitude difference of 0.5 degrees, altitude difference of 100 meters and slope difference of 3 degrees. Then the NDVImax difference of each vegetation destructed pixel and its similar pixels are calculated. The 5 similar pixels with the smallest NDVImax difference in the 8 years before the earthquake are selected as reference pixels. The mean NDVImaxs of these reference pixels after the earthquake are calculated and serve as the criterion to assess the vegetation recovery process.

Penrose high-dynamic-range imaging

NASA Astrophysics Data System (ADS)

Li, Jia; Bai, Chenyan; Lin, Zhouchen; Yu, Jian

2016-05-01

High-dynamic-range (HDR) imaging is becoming increasingly popular and widespread. The most common multishot HDR approach, based on multiple low-dynamic-range images captured with different exposures, has difficulties in handling camera and object movements. The spatially varying exposures (SVE) technology provides a solution to overcome this limitation by obtaining multiple exposures of the scene in only one shot but suffers from a loss in spatial resolution of the captured image. While aperiodic assignment of exposures has been shown to be advantageous during reconstruction in alleviating resolution loss, almost all the existing imaging sensors use the square pixel layout, which is a periodic tiling of square pixels. We propose the Penrose pixel layout, using pixels in aperiodic rhombus Penrose tiling, for HDR imaging. With the SVE technology, Penrose pixel layout has both exposure and pixel aperiodicities. To investigate its performance, we have to reconstruct HDR images in square pixel layout from Penrose raw images with SVE. Since the two pixel layouts are different, the traditional HDR reconstruction methods are not applicable. We develop a reconstruction method for Penrose pixel layout using a Gaussian mixture model for regularization. Both quantitative and qualitative results show the superiority of Penrose pixel layout over square pixel layout.

Arctic foxes, lemmings, and canada goose nest survival at cape Churchill, Manitoba

USGS Publications Warehouse

Reiter, M.E.; Andersen, D.E.

2011-01-01

We examined factors influencing Canada Goose (Branta canadensis interior) annual nest success, including the relative abundance of collared lemmings (Dicrostonyx richardsoni), arctic fox (Alopex lagopus) den occupancy, nest density, and spring phenology using data collected during annual Canada Goose breeding area surveys at Cape Churchill, Manitoba. Nest density and arctic fox den occupancy strongly influenced Canada Goose nest success. High nest density resulted in higher nest success and high den occupancy reduced nest success. Nest success was not influenced by lemming abundance in the current or previous year as predicted by the "bird-lemming" hypothesis. Reducing arctic fox abundance through targeted management increased nest survival of Canada Geese; a result that further emphasizes the importance of arctic fox as nest predators in this system. The spatial distribution of nest predators, at least for dispersed-nesting geese, may be most important for nest survival, regardless of the abundance of small mammals in the local ecosystem. Further understanding of the factors influencing the magnitude and variance in arctic fox abundance in this region, and the spatial scale at which these factors are realized, is necessary to fully explain predator-prey-alternative prey dynamics in this system. ?? 2011 by the Wilson Ornithological Society.

Ecological consequences of colony structure in dynamic ant nest networks.

PubMed

Ellis, Samuel; Franks, Daniel W; Robinson, Elva J H

2017-02-01

Access to resources depends on an individual's position within the environment. This is particularly important to animals that invest heavily in nest construction, such as social insects. Many ant species have a polydomous nesting strategy: a single colony inhabits several spatially separated nests, often exchanging resources between the nests. Different nests in a polydomous colony potentially have differential access to resources, but the ecological consequences of this are unclear. In this study, we investigate how nest survival and budding in polydomous wood ant ( Formica lugubris ) colonies are affected by being part of a multi-nest system. Using field data and novel analytical approaches combining survival models with dynamic network analysis, we show that the survival and budding of nests within a polydomous colony are affected by their position in the nest network structure. Specifically, we find that the flow of resources through a nest, which is based on its position within the wider nest network, determines a nest's likelihood of surviving and of founding new nests. Our results highlight how apparently disparate entities in a biological system can be integrated into a functional ecological unit. We also demonstrate how position within a dynamic network structure can have important ecological consequences.

Estimating nest detection probabilities for white-winged dove nest transects in Tamaulipas, Mexico

USGS Publications Warehouse

Nichols, J.D.; Tomlinson, R.E.; Waggerman, G.

1986-01-01

Nest transects in nesting colonies provide one source of information on White-winged Dove (Zenaida asiatica asiatica) population status and reproduction. Nests are counted along transects using standardized field methods each year in Texas and northeastern Mexico by personnel associated with Mexico's Office of Flora and Fauna, the Texas Parks and Wildlife Department, and the U.S. Fish and Wildlife Service. Nest counts on transects are combined with information on the size of nesting colonies to estimate total numbers of nests in sampled colonies. Historically, these estimates have been based on the actual nest counts on transects and thus have required the assumption that all nests lying within transect boundaries are detected (seen) with a probability of one. Our objectives were to test the hypothesis that nest detection probability is one and, if rejected, to estimate this probability.

Nest Site Characteristics of Cavity Nesting Birds in Central Missouri

Treesearch

Jeffery D. Brawn; Bernice Tannenbaum; Keith E. Evans

1984-01-01

Two study sites in central Missouri oak-hickory forests were searched for nest sites of cavity nesting birds. Researchers located and measured 133 nests of 11 species. Cavity nesting bird habitat selection is affected by both snag characteristics and vegetation structure.

Spawning chronology, nest site selection and nest success of smallmouth bass during benign streamflow conditions

USGS Publications Warehouse

Dauwalter, D.C.; Fisher, W.L.

2007-01-01

We documented the nesting chronology, nest site selection and nest success of smallmouth bass Micropterus dolomieu in an upstream (4th order) and downstream (5th order) reach of Baron Fork Creek, Oklahoma. Males started nesting in mid-Apr. when water temperatures increased to 16.9 C upstream, and in late-Apr. when temperatures increased to 16.2 C downstream. Streamflows were low (77% upstream to 82% downstream of mean Apr. streamflow, and 12 and 18% of meanjun. streamflow; 47 and 55 y of record), and decreased throughout the spawning period. Larger males nested first upstream, as has been observed in other populations, but not downstream. Upstream, progeny in 62 of 153 nests developed to swim-up stage. Downstream, progeny in 31 of 73 nests developed to swim-up. Nesting densities upstream (147/km) and downstream (100/km) were both higher than any densities previously reported. Males selected nest sites with intermediate water depths, low water velocity and near cover, behavior that is typical of smallmouth bass. Documented nest failures resulted from human disturbance, angling, and longear sunfish predation. Logistic exposure models showed that water velocity at the nest was negatively related and length of the guarding male was positively related to nest success upstream. Male length and number of degree days were both positively related to nest success downstream. Our results, and those of other studies, suggest that biological factors account for most nest failures during benign (stable, low flow) streamflow conditions, whereas nest failures attributed to substrate mobility or nest abandonment dominate when harsh streamflow conditions (spring floods) coincide with the spawning season.

Nesting ecology of Podocnemis expansa (Schweigger, 1812) and Podocnemis unifilis (Troschel, 1848) (Testudines, Podocnemididae) in the Javaés River, Brazil.

PubMed

Ferreira Júnior, P D; Castro, P T A

2010-02-01

Nest site has influence on incubation duration and hatching success of two Neotropical turtles, the giant Amazon River turtle (Podocnemis expansa) and yellow-spotted side-neck turtle (Podocnemis unifilis--'Tracajá'). The 2000 and 2001 nesting seasons have been monitored at the Javaés River in Bananal Island, Brazil. Although they nest on the same beaches, there is a separation of the nesting areas of P unifilis and P. expansa nests on the upper parts of the beach. The incubation duration for P. expansa is influenced by the nesting period, the height of the nest from the river, the clutch size, and the grain size in the site of the nest. Nests of Podocnemis expansa placed in coarse sediments have shorter incubation duration than those placed in finer sediments. The hatching success in P. expansa is influenced by grain size, incubation duration, and nesting period. The grain size is negatively correlated with hatching success, indicating that the nests situated in finer-grained sand have better chances of successful egg hatching than those in coarser-grained sand. Nests of the end of the reproductive season have lower hatching success and incubation duration than those at the start of the season. For P. unifilis, the nesting period and nest depth influence the incubation duration; moreover, the river dynamics significantly affect the hatching success. The oscillation of the river level and the moment of initial increase, the height of the nest from the river level, and the nesting period are all decisive components for hatching success. The results of this research show the importance of protecting areas with great geological diversity, wherein the features of the environment can affect the microenvironment of nests, with consequences on incubation duration and hatching success.

Terrestrial nest-building by wild chimpanzees (Pan troglodytes): implications for the tree-to-ground sleep transition in early hominins.

PubMed

Koops, Kathelijne; McGrew, William C; Matsuzawa, Tetsuro; Knapp, Leslie A

2012-07-01

Nest-building is a great ape universal and arboreal nesting in chimpanzees and bonobos suggests that the common ancestor of Pan and Homo also nested in trees. It has been proposed that arboreal nest-building remained the prevailing pattern until Homo erectus, a fully terrestrial biped, emerged. We investigated the unusual occurrence of ground-nesting in chimpanzees (Pan troglodytes), which may inform on factors influencing the tree-to-ground sleep transition in the hominin lineage. We used a novel genetic approach to examine ground-nesting in unhabituated chimpanzees at Seringbara in the Nimba Mountains, Guinea. Previous research showed that ground-nesting at Seringbara was not ecologically determined. Here, we tested a possible mate-guarding function of ground-nesting by analyzing DNA from shed hairs collected from ground nests and tree nests found in close proximity. We examined whether or not ground-nesting was a group-level behavioral pattern and whether or not it occurred in more than one community. We used multiple genetic markers to identify sex and to examine variation in mitochondrial DNA control region (HV1, HV2) sequences. Ground-nesting was a male-biased behavior and males constructed more elaborate ("night") nests than simple ("day") nests on the ground. The mate-guarding hypothesis was not supported, as ground and associated tree nests were built either by maternally-related males or possibly by the same individuals. Ground-nesting was widespread and likely habitual in two communities. We suggest that terrestrial nest-building may have already occurred in arboreally-adapted early hominins before the emergence of H. erectus. Copyright © 2012 Wiley Periodicals, Inc.

Nest construction by a ground-nesting bird represents a potential trade-off between egg crypticity and thermoregulation.

PubMed

Mayer, Paul M; Smith, Levica M; Ford, Robert G; Watterson, Dustin C; McCutchen, Marshall D; Ryan, Mark R

2009-04-01

Predation selects against conspicuous colors in bird eggs and nests, while thermoregulatory constraints select for nest-building behavior that regulates incubation temperatures. We present results that suggest a trade-off between nest crypticity and thermoregulation of eggs based on selection of nest materials by piping plovers (Charadrius melodus), a ground-nesting bird that constructs simple, pebble-lined nests highly vulnerable to predators and exposed to temperature extremes. Piping plovers selected pebbles that were whiter and appeared closer in color to eggs than randomly available pebbles, suggesting a crypsis function. However, nests that were more contrasting in color to surrounding substrates were at greater risk of predation, suggesting an alternate strategy driving selection of white rocks. Near-infrared reflectance of nest pebbles was higher than randomly available pebbles, indicating a direct physical mechanism for heat control through pebble selection. Artificial nests constructed of randomly available pebbles heated more quickly and conferred heat to model eggs, causing eggs to heat more rapidly than in nests constructed from piping plover nest pebbles. Thermal models and field data indicated that temperatures inside nests may remain up to 2-6 degrees C cooler than surrounding substrates. Thermal models indicated that nests heat especially rapidly if not incubated, suggesting that nest construction behavior may serve to keep eggs cooler during the unattended laying period. Thus, pebble selection suggests a potential trade-off between maximizing heat reflectance to improve egg microclimate and minimizing conspicuous contrast of nests with the surrounding substrate to conceal eggs from predators. Nest construction behavior that employs light-colored, thermally reflective materials may represent an evolutionary response by birds and other egg-laying organisms to egg predation and heat stress.

Potential Influences of Climate and Nest Structure on Spotted Owl Reproductive Success: A Biophysical Approach

PubMed Central

Rockweit, Jeremy T.; Franklin, Alan B.; Bakken, George S.; Gutiérrez, R. J.

2012-01-01

Many bird species do not make their own nests; therefore, selection of existing sites that provide adequate microclimates is critical. This is particularly true for owls in north temperate climates that often nest early in the year when inclement weather is common. Spotted owls use three main types of nest structures, each of which are structurally distinct and may provide varying levels of protection to the eggs or young. We tested the hypothesis that spotted owl nest configuration influences nest microclimate using both experimental and observational data. We used a wind tunnel to estimate the convective heat transfer coefficient (hc) of eggs in 25 potential nest configurations that mimicked 2 nest types (top-cavity and platform nests), at 3 different wind speeds. We then used the estimates of hc in a biophysical heat transfer model to estimate how long it would take unattended eggs to cool from incubation temperature (∼36°C) to physiological zero temperature (PZT; ∼26°C) under natural environmental conditions. Our results indicated that the structural configuration of nests influences the cooling time of the eggs inside those nests, and hence, influences the nest microclimate. Estimates of time to PZT ranged from 10.6 minutes to 33.3 minutes. Nest configurations that were most similar to platform nests always had the fastest egg cooling times, suggesting that platform nests were the least protective of those nests we tested. Our field data coupled with our experimental results suggested that nest choice is important for the reproductive success of owls during years of inclement weather or in regions characterized by inclement weather during the nesting season. PMID:22859993

Directional fractal signature methods for trabecular bone texture in hand radiographs: Data from the Osteoarthritis Initiative

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wolski, M., E-mail: marcin.wolski@curtin.edu.au; Podsiadlo, P.; Stachowiak, G. W.

Purpose: To develop directional fractal signature methods for the analysis of trabecular bone (TB) texture in hand radiographs. Problems associated with the small size of hand bones and the orientation of fingers were addressed. Methods: An augmented variance orientation transform (AVOT) and a quadrant rotating grid (QRG) methods were developed. The methods calculate fractal signatures (FSs) in different directions. Unlike other methods they have the search region adjusted according to the size of bone region of interest (ROI) to be analyzed and they produce FSs defined with respect to any chosen reference direction, i.e., they work for arbitrary orientation ofmore » fingers. Five parameters at scales ranging from 2 to 14 pixels (depending on image size and method) were derived from rose plots of Hurst coefficients, i.e., FS in dominating roughness (FS{sub Sta}), vertical (FS{sub V}) and horizontal (FS{sub H}) directions, aspect ratio (StrS), and direction signatures (StdS), respectively. The accuracy in measuring surface roughness and isotropy/anisotropy was evaluated using 3600 isotropic and 800 anisotropic fractal surface images of sizes between 20 × 20 and 64 × 64 pixels. The isotropic surfaces had FDs ranging from 2.1 to 2.9 in steps of 0.1, and the anisotropic surfaces had two dominating directions of 30° and 120°. The methods were used to find differences in hand TB textures between 20 matched pairs of subjects with (cases: approximate Kellgren-Lawrence (KL) grade ≥2) and without (controls: approximate KL grade <2) radiographic hand osteoarthritis (OA). The OA Initiative public database was used and 20 × 20 pixel bone ROIs were selected on 5th distal and middle phalanges. The performance of the AVOT and QRG methods was compared against a variance orientation transform (VOT) method developed earlier [M. Wolski, P. Podsiadlo, and G. W. Stachowiak, “Directional fractal signature analysis of trabecular bone: evaluation of different methods to detect early osteoarthritis in knee radiographs,” Proc. Inst. Mech. Eng., Part H 223, 211–236 (2009)]. Results: The AVOT method correctly quantified the isotropic and anisotropic surfaces for all image sizes and scales. Values of FS{sub Sta} were significantly different (P < 0.05) between the isotropic surfaces. Using the VOT and QRG methods no differences were found at large scales for the isotropic surfaces that are smaller than 64 × 64 and 48 × 48 pixels, respectively, and at some scales for the anisotropic surfaces with size 48 × 48 pixels. Compared to controls, using the AVOT and QRG methods the authors found that OA TB textures were less rough (P < 0.05) in the dominating and horizontal directions (i.e., lower FS{sub Sta} and FS{sub H}), rougher in the vertical direction (i.e., higher FS{sub V}) and less anisotropic (i.e., higher StrS) than controls. No differences were found using the VOT method. Conclusions: The AVOT method is well suited for the analysis of bone texture in hand radiographs and it could be potentially useful for early detection and prediction of hand OA.« less

Development of relative thermal stress index (RTSI) for Monitoring and Management of Dry Deciduous Ecosystem

NASA Astrophysics Data System (ADS)

Gupta, R. K.; Vijayan, D.

Gir wildlife sanctuary located between 20 r 57 to 21 r 20 N and 70 r 28 to 71 r 13 E is the last home of Asiatic lions Its biodiversity comprises of 450 recorded flowering plant species 32 species of mammals 26 species of reptiles about 300 species of birds and more than 2000 species of insects As per 1995 census it has 304 lions and 268 leopards The movement of wildlife to thermally comfortable zones to reduce stress conditions forces the changes in management plan with reference to change in localized water demand This necessitates the use of space based thermal data available from AVHRR MODIS etc to monitor temperature of Gir-ecosystem for meso-scale level operational utility As the time scale of the variability of NDVI parameter is much higher than that for lower boundary temperature LBT the dense patch in riverine forest having highest NDVI value would not experience change in its vigour with the change in the season NDVI value of such patch would be near invariant over the year and temperature of this pixel could serve as reference temperature for developing the concept of relative thermal stress index RTSI which is defined as RTSI T p -T r T max -T r wherein T r T max and T p refer to LBT over the maximum NDVI reference point maximum LBT observed in the Gir ecosystem and the temperature of the pixel in the image respectively RTSI images were computed from AVHRR images for post-monsoon leaf-shedded and summer seasons Scatter plot between RTSI and NDVI for summer seasons

Improving the Accuracy of Mapping Urban Vegetation Carbon Density by Combining Shadow Remove, Spectral Unmixing Analysis and Spatial Modeling

NASA Astrophysics Data System (ADS)

Qie, G.; Wang, G.; Wang, M.

2016-12-01

Mixed pixels and shadows due to buildings in urban areas impede accurate estimation and mapping of city vegetation carbon density. In most of previous studies, these factors are often ignored, which thus result in underestimation of city vegetation carbon density. In this study we presented an integrated methodology to improve the accuracy of mapping city vegetation carbon density. Firstly, we applied a linear shadow remove analysis (LSRA) on remotely sensed Landsat 8 images to reduce the shadow effects on carbon estimation. Secondly, we integrated a linear spectral unmixing analysis (LSUA) with a linear stepwise regression (LSR), a logistic model-based stepwise regression (LMSR) and k-Nearest Neighbors (kNN), and utilized and compared the integrated models on shadow-removed images to map vegetation carbon density. This methodology was examined in Shenzhen City of Southeast China. A data set from a total of 175 sample plots measured in 2013 and 2014 was used to train the models. The independent variables statistically significantly contributing to improving the fit of the models to the data and reducing the sum of squared errors were selected from a total of 608 variables derived from different image band combinations and transformations. The vegetation fraction from LSUA was then added into the models as an important independent variable. The estimates obtained were evaluated using a cross-validation method. Our results showed that higher accuracies were obtained from the integrated models compared with the ones using traditional methods which ignore the effects of mixed pixels and shadows. This study indicates that the integrated method has great potential on improving the accuracy of urban vegetation carbon density estimation. Key words: Urban vegetation carbon, shadow, spectral unmixing, spatial modeling, Landsat 8 images

Light microscopy and image analysis of thin filament lengths utilizing dual probes on beef, chicken, and rabbit myofibrils.

PubMed

Ringkob, T P; Swartz, D R; Greaser, M L

2004-05-01

Image analysis procedures for immunofluorescence microscopy were developed to measure muscle thin filament lengths of beef, rabbit, and chicken myofibrils. Strips of beef cutaneous trunci, rectus abdominis, psoas, and masseter; chicken pectoralis; and rabbit psoas muscles were excised 5 to 30 min postmortem. Fluorescein phalloidin and rhodamine myosin subfragment-1 (S1) were used to probe the myofibril structure. Digital images were recorded with a cooled charge-coupled device controlled with IPLab Spectrum software (Signal Analytics Corp.) on a Macintosh operating system. The camera was attached to an inverted microscope, using both the phase-contrast and fluorescence illumination modes. Unfixed myofibrils incubated with fluorescein phalloidin showed fluorescence primarily at the Z-line and the tips of the thin filaments in the overlap region. Images were processed using IPLab and the National Institutes of Health's Image software. A region of interest was selected and scaled by a factor of 18.18, which enlarged the image from 11 pixels/microm to approximately 200 pixels/microm. An X-Y plot was exported to Spectrum 1.1 (Academic Software Development Group), where the signal was processed with a second derivative routine, so a cursor function could be used to measure length. Fixation before phalloidin incubation resulted in greatest intensity at the Z lines but a more-uniform staining over the remainder of the thin filament zone. High-resolution image capture and processing showed that thin filament lengths were significantly different (P < 0.01) among beef, rabbit, and chicken, with lengths of 1.28 to 1.32 microm, 1.16 microm, and 1.05 microm, respectively. Measurements using the S1 signal confirmed the phalloidin results. Fluorescent probes may be useful to study sarcomere structure and help explain species and muscle differences in meat texture.

Detection of Aspens Using High Resolution Aerial Laser Scanning Data and Digital Aerial Images

PubMed Central

Säynäjoki, Raita; Packalén, Petteri; Maltamo, Matti; Vehmas, Mikko; Eerikäinen, Kalle

2008-01-01

The aim was to use high resolution Aerial Laser Scanning (ALS) data and aerial images to detect European aspen (Populus tremula L.) from among other deciduous trees. The field data consisted of 14 sample plots of 30 m × 30 m size located in the Koli National Park in the North Karelia, Eastern Finland. A Canopy Height Model (CHM) was interpolated from the ALS data with a pulse density of 3.86/m2, low-pass filtered using Height-Based Filtering (HBF) and binarized to create the mask needed to separate the ground pixels from the canopy pixels within individual areas. Watershed segmentation was applied to the low-pass filtered CHM in order to create preliminary canopy segments, from which the non-canopy elements were extracted to obtain the final canopy segmentation, i.e. the ground mask was analysed against the canopy mask. A manual classification of aerial images was employed to separate the canopy segments of deciduous trees from those of coniferous trees. Finally, linear discriminant analysis was applied to the correctly classified canopy segments of deciduous trees to classify them into segments belonging to aspen and those belonging to other deciduous trees. The independent variables used in the classification were obtained from the first pulse ALS point data. The accuracy of discrimination between aspen and other deciduous trees was 78.6%. The independent variables in the classification function were the proportion of vegetation hits, the standard deviation of in pulse heights, accumulated intensity at the 90th percentile and the proportion of laser points reflected at the 60th height percentile. The accuracy of classification corresponded to the validation results of earlier ALS-based studies on the classification of individual deciduous trees to tree species. PMID:27873799

Nest site characteristics, nesting movements, and lack of long-term nest site fidelity in Agassiz's desert tortoises at a wind energy facility in southern California

USGS Publications Warehouse

Lovich, Jeffrey E.; Agha, Mickey; Yackulic, Charles B.; Meyer-Wilkins, Kathie; Bjurlin, Curtis; Ennen, Joshua R.; Arundel, Terry R.; Austin, Meaghan

2014-01-01

Nest site selection has important consequences for maternal and offspring survival and fitness. Females of some species return to the same nesting areas year after year. We studied nest site characteristics, fidelity, and daily pre-nesting movements in a population of Agassiz’s desert tortoises (Gopherus agassizii) at a wind energy facility in southern California during two field seasons separated by over a decade. No females returned to the same exact nest site within or between years but several nested in the same general area. However, distances between first and second clutches within a year (2000) were not significantly different from distances between nests among years (2000 and 2011) for a small sample of females, suggesting some degree of fidelity within their normal activity areas. Environmental attributes of nest sites did not differ significantly among females but did among years due largely to changes in perennial plant structure as a result of multiple fires. Daily pre-nesting distances moved by females decreased consistently from the time shelled eggs were first visible in X-radiographs until oviposition, again suggesting some degree of nest site selection. Tortoises appear to select nest sites that are within their long-term activity areas, inside the climate-moderated confines of one of their self-constructed burrows, and specifically, at a depth in the burrow that minimizes exposure of eggs and embryos to lethal incubation temperatures. Nesting in “climate-controlled” burrows and nest guarding by females relaxes some of the constraints that drive nest site selection in other oviparous species.

Assessing nest-building behavior of mice using a 3D depth camera.

PubMed

Okayama, Tsuyoshi; Goto, Tatsuhiko; Toyoda, Atsushi

2015-08-15

We developed a novel method to evaluate the nest-building behavior of mice using an inexpensive depth camera. The depth camera clearly captured nest-building behavior. Using three-dimensional information from the depth camera, we obtained objective features for assessing nest-building behavior, including "volume," "radius," and "mean height". The "volume" represents the change in volume of the nesting material, a pressed cotton square that a mouse shreds and untangles in order to build its nest. During the nest-building process, the total volume of cotton fragments is increased. The "radius" refers to the radius of the circle enclosing the fragments of cotton. It describes the extent of nesting material dispersion. The "radius" averaged approximately 60mm when a nest was built. The "mean height" represents the change in the mean height of objects. If the nest walls were high, the "mean height" was also high. These features provided us with useful information for assessment of nest-building behavior, similar to conventional methods for the assessment of nest building. However, using the novel method, we found that JF1 mice built nests with higher walls than B6 mice, and B6 mice built nests faster than JF1 mice. Thus, our novel method can evaluate the differences in nest-building behavior that cannot be detected or quantified by conventional methods. In future studies, we will evaluate nest-building behaviors of genetically modified, as well as several inbred, strains of mice, with several nesting materials. Copyright © 2015 Elsevier B.V. All rights reserved.

Consequences of least tern (Sternula antillarum) microhabitat nest-site selection on natural and mechanically constructed sandbars in the Missouri River

USGS Publications Warehouse

Stucker, Jennifer H.; Buhl, Deborah A.; Sherfy, Mark H.

2013-01-01

Nest-habitat selection in colonial species has rarely been assessed at multiple spatial scales to evaluate its fitness consequences. Management for the federally endangered U.S. Interior population of Least Terns (Sternula antillarum) has focused on maintenance of breeding habitats, including mechanical construction of sandbars from dredged material. Least Terns are attracted to large areas of unvegetated substrate, yet small-scale habitat features are thought to trigger selection for nesting. We evaluated nest-scale habitat selection to determine (1) whether selection differs between constructed and natural sandbars and (2) the subsequent consequences of habitat selection on nest success. During 2006–2008, we examined 869 Least Tern nest sites on constructed and natural sandbars in the Missouri River for evidence of microhabitat selection at the nest in relation to habitat within the surrounding 3-m area. Least Tern nest sites had coarser and larger substrate materials at the nest, more debris, and less vegetation than the surrounding area. Nests in constructed habitats had a greater percentage of coarse substrates and less vegetation or debris than nests in naturally created habitats. Apparent nest success was 1.8× greater on constructed than on natural sandbars. Nest success was best predicted by models with two spatial scales of predictors, including substrates (nest) and vegetation and debris (nest or surrounding area). Our results indicate that Least Terns select nest microhabitat characteristics that are associated with wind- and water-scoured habitats, and that nest success increases when these habitats are selected.

Bee species-specific nesting material attracts a generalist parasitoid: implications for co-occurring bees in nest box enhancements.

PubMed

Macivor, J Scott; Salehi, Baharak

2014-08-01

Artificial nests (e.g., nest boxes) for bees are increasingly being used to contribute to nesting habitat enhancement for bees that use preexisting cavities to provision brood. They usually incorporate additional nesting materials that vary by species. Cavity-nesting bees are susceptible to brood parasitoids that recognize their host(s) using visual and chemical cues. Understanding the range of cues that attract parasitoids to bee nests, including human-made analogues, is important if we wish to control parasitism and increase the potential value of artificial nests as habitat-enhancement strategies. In this study, we investigated the cues associated with the orientation of the generalist brood parasitoid Monodontomerus obscurus Westwood (Hymenoptera: Torymidae) to the nests of a common cavity-nesting resin bee Megachile campanulae (Robertson) (Megachilidae). The parasitoids were reared from previously infested M. campanulae brood cells and placed into choice trials where they were presented with pairs of different nest material cues. Among different materials tested, we found that Mo. obscurus was most attracted to fresh resin collected directly from Pinus strobus trees followed by previously used resin collected from the bee nest. The parasitoid also attacked other bee species in the same nest boxes, including those that do not use resin for nesting. Our findings suggest that M. campanulae could act as a magnet, drawing parasites away from other bee hosts co-occurring in nest boxes, or, as an attractant of Mo. obscurus to nest boxes, increasing attacks on co-occurring host bee species, potentially undermining bee diversity enhancement initiatives.

Can hedgerow management mitigate the impacts of predation on songbird nest survival?

PubMed

Dunn, Jenny C; Gruar, Derek; Stoate, Chris; Szczur, John; Peach, Will J

2016-12-15

Nest predators can have significant impacts on songbird reproductive success. These impacts may be amplified by habitat simplification and here we test whether sympathetic management of farmland hedgerows can reduce nest depredation, especially by corvids. We test whether songbirds select nest sites according to structural features of hedgerows (including nest visibility and accessibility), and whether these features influence nest predation risk. Songbirds selected nesting sites affording higher vegetation cover above the nest, increased visibility on the nest-side of the hedgerow and reduced visibility on the far side of the hedge. Nest survival was unrelated to corvid abundance and only weakly related (at the egg stage) to corvid nest proximity. Nest survival at the chick stage was higher where vegetation structure restricted access to corvid-sized predators (averaging 0.78 vs. 0.53), and at nests close to potential vantage points. Overall nest survival was sensitive to hedgerow structure (accessibility) particularly at low exposure to corvid predation, while the overall impact of corvid exposure was dependent on the relationship involving proximity to vantage points. Nest survival over the chick stage was much higher (0.67) in stock-proof, trimmed and mechanically cut hedgerows, (which tended to provide lower side visibility and accessibility) than in recently laid, remnant or leggy hedgerows (0.18). Long-term reductions in the management of British hedgerows may therefore be exposing nesting songbirds to increased predation risk. We recommend regular rotational cutting of hedgerows to maintain a dense woody structure and thereby reduce songbird nest predation. Copyright © 2016 Elsevier Ltd. All rights reserved.

From neurons to nests: nest-building behaviour as a model in behavioural and comparative neuroscience.

PubMed

Hall, Zachary J; Meddle, Simone L; Healy, Susan D

Despite centuries of observing the nest building of most extant bird species, we know surprisingly little about how birds build nests and, specifically, how the avian brain controls nest building. Here, we argue that nest building in birds may be a useful model behaviour in which to study how the brain controls behaviour. Specifically, we argue that nest building as a behavioural model provides a unique opportunity to study not only the mechanisms through which the brain controls behaviour within individuals of a single species but also how evolution may have shaped the brain to produce interspecific variation in nest-building behaviour. In this review, we outline the questions in both behavioural and comparative neuroscience that nest building could be used to address, summarize recent findings regarding the neurobiology of nest building in lab-reared zebra finches and across species building different nest structures, and suggest some future directions for the neurobiology of nest building.

The nest architecture of the ant Odontomachus brunneus.

PubMed

Cerquera, Lina M; Tschinkel, Walter R

2010-01-01

The architecture of the subterranean nests of the ant Odontomachus brunneus (Patton) (Hymenoptera: Formicidae) was studied by means of casts with dental plaster or molten metal. The entombed ants were later recovered by dissolution of plaster casts in hot running water. O. brunneus excavates simple nests, each consisting of a single, vertical shaft connecting more or less horizontal, simple chambers. Nests contained between 11 and 177 workers, from 2 to 17 chambers, and 28 to 340 cm(2) of chamber floor space and reached a maximum depth of 18 to 184 cm. All components of nest size increased simultaneously during nest enlargement, number of chambers, mean chamber size, and nest depth, making the nest shape (proportions) relatively size-independent. Regardless of nest size, all nests had approximately 2 cm(2) of chamber floor space per worker. Chambers were closer together near the top and the bottom of the nest than in the middle, and total chamber area was greater near the bottom. Colonies occasionally incorporated cavities made by other animals into their nests.

Factors determining presence of passerines breeding within White Stork Ciconia ciconia nests

NASA Astrophysics Data System (ADS)

Zbyryt, Adam; Jakubas, Dariusz; Tobolka, Marcin

2017-10-01

Nests of White Stork Ciconia ciconia are commonly used by various passerines as nesting sites. In this study, we investigated factors determining presence and number of pairs of species breeding within White Stork nests in an extensive farmland in NE Poland. In 133 (57%) out of 233 White Stork nests, we found at least one breeding pair of passerine bird. These were from three species: House Sparrows Passer domesticus (68% of 133 nests with co-breeding), Tree Sparrows Passer montanus (65%), and Starlings Sturnus vulgaris (30%). The probability of breeding passerines within White Stork nests increased with increasing nest thickness, and was significantly higher in currently occupied nests. Sparrows were more likely to breed in White Stork nests located on electricity poles, situated closer to settlements and surrounded mainly by arable fields where meadows were not prevalent. In this paper, we show that White Stork nests are favorable nesting sites for passerines, as they are well insulated and provide an anti-predatory shield.

Sexually selected nest-building--Pomatoschistus minutus males build smaller nest-openings in the presence of sneaker males.

PubMed

Svensson, O; Kvarnemo, C

2003-09-01

Both natural selection and sexual selection may act on nest-building. We tested experimentally how different regimes of egg-predation and male-male competition influence nest-building before mating, using the marine fish sand goby, Pomatoschistus minutus. Males with sneaker males present built the smallest nest-openings, smaller than males held alone or with Pomatoschistus microps males (which may predate eggs and compete over nest-sites but not compete over fertilizations). Males with visual access to other nest-building males tended also to build smaller openings than males held alone or with P. microps. Males with egg-predators present built nests with openings not differing significantly from any other treatment. Our results indicate that the small nest-openings found in the sneaker male treatment are sexually selected through protection against sneaking or by female choice. Across treatments, time span before a male started to build his nest also explained variation in nest-opening width; males starting late built larger nest-openings.

The influence of coyotes on an urban Canada goose population in the Chicago metropolitan area

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brown, Justin L.; /Ohio State U.

Canada geese (Branta canadensis) have become common in many urban areas, often creating nuisance problems for human residents. The presence of urban geese has raised concerns about the spread of disease, increased erosion, excessive noise, eutrophication of waterways, and general nuisance problems. Goose populations have grown due to an increase in urbanization resulting in an abundance of high quality food (urban grass) and suitable nesting sites, as well as a decrease in some predators. I monitored nest predation in the Chicago suburbs during the 2004 and 2005 nesting seasons using 3 nest monitoring techniques to identify predators: video cameras, plasticinemore » eggs, and sign from nest using a classification tree analysis. Of 58 nests monitored in 2004 and 286 in 2005, only raccoons (Procyon lotor) and coyotes (Canis latrans) were identified as nest predators. Raccoons were responsible for 22-25% of depredated nests, but were rarely capable of depredating nests that were actively defended by a goose. Coyotes were responsible for 75-78% of all Canada goose nest depredation and were documented killing one adult goose and feeding on several others. The coyote is a top-level predator that had increased in many metropolitan areas in recent years. To determine if coyotes were actively hunting geese or eggs during the nesting season, I analyzed coyote habitat selection between nesting and pre-nesting or post-nesting seasons. Coyote home ranges (95% Minimum Convex Polygon) were calculated for 19 coyotes to examine third order habitat selection related to goose nest abundance. A 100 m buffer (buffer habitat) was created and centered on each waterway edge and contained 90% of all nests. Coyotes showed selection for habitats during all seasons. Buffer habitat was the top ranked habitat in both pre-nesting and nesting seasons, but dropped to third ranked in post-nesting season. Habitat selection across seasons was compared using a repeated measures MANOVA. Habitat selection between pre-nesting and nesting seasons (P=0.72) were similar, while between post-nesting and nesting seasons there was a nearly significant difference (P=0.07). The insignificant change in habitat use across seasons suggests that coyotes did not switch habitat use to take advantage of goose nests. Alternatively, the change in ranking of buffer habitat across seasons suggests that coyotes may have switched habitat use to take advantage of goose nests. The results are not clear as large individual variation between coyotes due to differences in habitat availability, and social status interfere with the results of the analysis. Even though I failed to find strong support for coyotes actively hunting goose nests, they nevertheless were the primary nest predator in the area and may influence Canada goose populations. To determine the potential influence of coyotes on the Canada goose population, I created a Canada goose matrix population model that included variables such as coyote predation on adults and nests as well as coyote influence on nest desertion. Using the base population model I calculated the Canada goose population to be increasing with {lambda} = 1.055. The removal of all coyote influence on the goose population would allow {lambda} to increase to 1.214. Nest predation was the most important factor related to coyotes: the removal of coyote nest predation from the model resulted in a population growth rate {lambda} = 1.157. Modeling results suggest coyotes are serving as a limiting factor for the Canada goose population within the Chicago metropolitan area.« less

Effects of invasive woody plants on avian nest site selection and nesting success in shrublands

Treesearch

S. Schlossberg; D.I. King

2010-01-01

Exotic, invasive plants are a growing conservation problem. Birds frequently use invasive plants as nest substrates, but effects of invasives on avian nesting success have been equivocal in past studies. In 2004 and 2005, we assessed effects of invasive woody plants on avian nest-site selection and nesting success in western Massachusetts shrublands. At the nest scale...

Nest-site selection and nest success of an Arctic-breeding passerine, Smith's Longspur, in a changing climate

USGS Publications Warehouse

McFarland, Heather R.; Kendall, Steve J.; Powell, Abby

2017-01-01

Despite changes in shrub cover and weather patterns associated with climate change in the Arctic, little is known about the breeding requirements of most passerines tied to northern regions. We investigated the nesting biology and nest habitat characteristics of Smith's Longspurs (Calcarius pictus) in 2 study areas in the Brooks Range of Alaska, USA. First, we examined variation in nesting phenology in relation to local temperatures. We then characterized nesting habitat and analyzed nest-site selection for a subset of nests (n = 86) in comparison with paired random points. Finally, we estimated the daily survival rate of 257 nests found in 2007–2013 with respect to both habitat characteristics and weather variables. Nest initiation was delayed in years with snow events, heavy rain, and freezing temperatures early in the breeding season. Nests were typically found in open, low-shrub tundra, and never among tall shrubs (mean shrub height at nests = 26.8 ± 6.7 cm). We observed weak nest-site selection patterns. Considering the similarity between nest sites and paired random points, coupled with the unique social mating system of Smith's Longspurs, we suggest that habitat selection may occur at the neighborhood scale and not at the nest-site scale. The best approximating model explaining nest survival suggested a positive relationship with the numbers of days above 21°C that an individual nest experienced; there was little support for models containing habitat variables. The daily nest survival rate was high (0.972–0.982) compared with that of most passerines in forested or grassland habitats, but similar to that of passerines nesting on tundra. Considering their high nesting success and ability to delay nest initiation during inclement weather, Smith's Longspurs may be resilient to predicted changes in weather regimes on the breeding grounds. Thus, the greatest threat to breeding Smith's Longspurs associated with climate change may be the loss of low-shrub habitat types, which could significantly change the characteristics of breeding areas.

Renesting by dusky Canada geese on the Copper River Delta, Alaska

USGS Publications Warehouse

Fondell, Thomas F.; Grand, James B.; Miller, David A.W.; Anthony, R. Michael

2006-01-01

The population of dusky Canada geese (Branta canadensis occidentalis; hereafter duskies) breeding on the Copper River Delta (CRD), Alaska, USA, has been in long-term decline, largely as a result of reduced productivity. Estimates of renesting rates by duskies may be useful for adjusting estimates of the size of the breeding population derived from aerial surveys and for understanding population dynamics. We used a marked population of dusky females to obtain estimates of renesting propensity and renesting interval on the CRD, 1999–2000. Continuation nests, replacement nests initiated without a break in the laying sequence, resulted only after first nests were destroyed in the laying stage with ≤4 eggs laid. Renesting propensity declined with nest age from 72% in mid-laying to 30% in early incubation. Between first nests and renests, mean interval was 11.9 ± 0.6 days, mean distance was 74.5 m (range 0–214 m), and clutch size declined 0.9 ± 0.4 eggs. We incorporated our renesting estimates and available estimates of other nesting parameters into an individual-based model to predict the proportion of first nests, continuation nests, and renests, and to examine female success on the CRD, 1997–2000. Our model predicted that 19–36% of nests each year were continuation nests and renests. Also, through 15 May (the approx. date of breeding ground surveys), 1.1–1.3 nests were initiated per female. Thus, the number of nests per female would have a significant, though relatively consistent, effect on adjusting the relation between numbers of nests found on ground surveys versus numbers of birds seen during aerial surveys. We also suggest a method that managers could use to predict nests per female using nest success of early nests. Our model predicted that relative to observed estimates of nest success, female success was 32–100% greater, due to replacement nests. Thus, although nest success remains low, production for duskies was higher than previously thought. For dusky Canada geese, managers need to consider both continuation nests and renests in designing surveys and in calculating adjustment factors for the expansion of aerial survey data using nest densities.

a Data Field Method for Urban Remotely Sensed Imagery Classification Considering Spatial Correlation

NASA Astrophysics Data System (ADS)

Zhang, Y.; Qin, K.; Zeng, C.; Zhang, E. B.; Yue, M. X.; Tong, X.

2016-06-01

Spatial correlation between pixels is important information for remotely sensed imagery classification. Data field method and spatial autocorrelation statistics have been utilized to describe and model spatial information of local pixels. The original data field method can represent the spatial interactions of neighbourhood pixels effectively. However, its focus on measuring the grey level change between the central pixel and the neighbourhood pixels results in exaggerating the contribution of the central pixel to the whole local window. Besides, Geary's C has also been proven to well characterise and qualify the spatial correlation between each pixel and its neighbourhood pixels. But the extracted object is badly delineated with the distracting salt-and-pepper effect of isolated misclassified pixels. To correct this defect, we introduce the data field method for filtering and noise limitation. Moreover, the original data field method is enhanced by considering each pixel in the window as the central pixel to compute statistical characteristics between it and its neighbourhood pixels. The last step employs a support vector machine (SVM) for the classification of multi-features (e.g. the spectral feature and spatial correlation feature). In order to validate the effectiveness of the developed method, experiments are conducted on different remotely sensed images containing multiple complex object classes inside. The results show that the developed method outperforms the traditional method in terms of classification accuracies.

Nest-site selection and success of mottled ducks on agricultural lands in southwest Louisiana

USGS Publications Warehouse

Durham, R.S.; Afton, A.D.

2003-01-01

Listing of the mottled duck (Anas fulvigula maculosa) as a priority species in the Gulf Coast Joint Venture of the North American Waterfowl Management Plan, coupled with recent declines of rice (Oryza sativa) acreage, led us to investigate the nesting ecology of this species on agricultural lands in southwest Louisiana. We examined nest-site selection at macro- and microhabitat levels, nest success, causes of nest failures, and habitat features influencing nest success. We found that female mottled ducks preferred to nest in permanent pastures with knolls (53% of nests) and idle fields (22% of nests). Vegetation height was greater at nests than at random points within the same macrohabitat patch. Successful nests were associated with greater numbers of plant species, located farther from water, and associated with higher vegetation density values than were unsuccessful nests. We determined that mammalian predators caused most nest failures (77% of 52 unsuccessful nests). Our results suggest that nest success of mottled ducks on agricultural lands in southwest Louisiana could be improved by 1) locating large permanent pastures and idle fields near rice fields and other available wetlands, 2) managing plant communities in these upland areas to favor dense stands of perennial bunch grasses, tall composites, dewberry (Rubus trivialis), and other native grasses and forbs, and 3) managing cattle-stocking rates and the duration and timing of grazing to promote tall, dense stands of these plant taxa during the nesting season (March-June).

Upland duck nesting related to land use and predator reduction

USGS Publications Warehouse

Duebbert, H.F.; Kantrud, H.A.

1974-01-01

Duck nesting was studied during 1971 in north-central South Dakota under four conditions: in idle, five or six year old fields of domestic grass-legume mixtures in an area where predators including the red fox (Vulpes fulva), raccoon (Procyon lotor), striped skunk (Mephitis mephitis), and badger (Taxidea taxus) were (1) reduced and (2) not reduced. Nesting was also studied in tracts of active agricultural land (primarily croplands and pastures) where predators were (3) reduced, and (4) not reduced. Under condition (1), 260 nests were found on 0.87 km2 (299 nests/km2), eggs hatched in 92 percent of the nests and production was 22.0 ducklings/hectare. Under condition (2), 187 nests were found on 2.22 km2 (84 nests/km2), nest success was 68 percent and 4.7 ducklings/hectare were produced. On active agricultural land subject to predator reduction (condition 3), 64 nests were found on 5.14 km2 (12 nests/km2). Eggs in 85 percent of the nests hatched and production was 0.7 duckling/hectare. On active agricultural land not subject to predator reduction (condition 4), 58 nests were found on 4.01 km2 (14 nests/km2), nest success was 51 percent and 0.5 duckling/hectare was produced. Idle, 16 to 65-hectare (40 to 160-acre) stands of cool-season, introduced grasses in combination with legumes produced maximum numbers of upland nesting ducks.

Changes in reproductive life-history strategies in response to nest density in a shell-brooding cichlid, Telmatochromis vittatus

NASA Astrophysics Data System (ADS)

Ota, Kazutaka; Hori, Michio; Kohda, Masanori

2012-01-01

To determine whether the appearance of a reproductively parasitic tactic varies, and how this variation affects territorial males of the Lake Tanganyika cichlid fish Telmatochromis vittatus, we examined the reproductive ecology of territorial males in Mtondwe and compared it with that of a neighboring Wonzye population, where nest density differs from that at Mtondwe. In Wonzye, with high nest density, male tactics change with their body size from a territorial to a non-territorial parasitic tactic called piracy in which they conquer several nests defended by territorial males and take over the nests while females are spawning. These "pirate" males could decrease the costs incurred by travelling among nests by exclusively targeting aggregations of nests in close proximity while avoiding separate nests. Territorial males in Wonzye sacrifice the potential higher attractiveness offered by large nests and instead compete for nests farther from neighbors on which pirates less frequently intrude. In contrast, the Mtondwe population had lower nest density and piracy was absent. Given that the success of piracy depends on the close proximity of nests, nest density is likely responsible for the observed variation in the occurrence of piracy between the two populations. Furthermore, in Mtondwe, territorial males competed for larger nests and were smaller than the territorial males in Wonzye. Thus, this lower nest density may free territorial males from the selection pressures for increased size caused by both defense against nest piracy and the need to develop into pirates as they grow.