What doesn't kill you makes you wary? Effect of repeated culling on the behaviour of an invasive predator.

PubMed

Côté, Isabelle M; Darling, Emily S; Malpica-Cruz, Luis; Smith, Nicola S; Green, Stephanie J; Curtis-Quick, Jocelyn; Layman, Craig

2014-01-01

As a result of being hunted, animals often alter their behaviour in ways that make future encounters with predators less likely. When hunting is carried out for conservation, for example to control invasive species, these behavioural changes can inadvertently impede the success of future efforts. We examined the effects of repeated culling by spearing on the behaviour of invasive predatory lionfish (Pterois volitans/miles) on Bahamian coral reef patches. We compared the extent of concealment and activity levels of lionfish at dawn and midday on 16 coral reef patches off Eleuthera, The Bahamas. Eight of the patches had been subjected to regular daytime removals of lionfish by spearing for two years. We also estimated the distance at which lionfish became alert to slowly approaching divers on culled and unculled reef patches. Lionfish on culled reefs were less active and hid deeper within the reef during the day than lionfish on patches where no culling had occurred. There were no differences at dawn when removals do not take place. Lionfish on culled reefs also adopted an alert posture at a greater distance from divers than lionfish on unculled reefs. More crepuscular activity likely leads to greater encounter rates by lionfish with more native fish species because the abundance of reef fish outside of shelters typically peaks at dawn and dusk. Hiding deeper within the reef could also make remaining lionfish less likely to be encountered and more difficult to catch by spearfishers during culling efforts. Shifts in the behaviour of hunted invasive animals might be common and they have implications both for the impact of invasive species and for the design and success of invasive control programs.

What Doesn't Kill You Makes You Wary? Effect of Repeated Culling on the Behaviour of an Invasive Predator

PubMed Central

Côté, Isabelle M.; Darling, Emily S.; Malpica-Cruz, Luis; Smith, Nicola S.; Green, Stephanie J.; Curtis-Quick, Jocelyn; Layman, Craig

2014-01-01

As a result of being hunted, animals often alter their behaviour in ways that make future encounters with predators less likely. When hunting is carried out for conservation, for example to control invasive species, these behavioural changes can inadvertently impede the success of future efforts. We examined the effects of repeated culling by spearing on the behaviour of invasive predatory lionfish (Pterois volitans/miles) on Bahamian coral reef patches. We compared the extent of concealment and activity levels of lionfish at dawn and midday on 16 coral reef patches off Eleuthera, The Bahamas. Eight of the patches had been subjected to regular daytime removals of lionfish by spearing for two years. We also estimated the distance at which lionfish became alert to slowly approaching divers on culled and unculled reef patches. Lionfish on culled reefs were less active and hid deeper within the reef during the day than lionfish on patches where no culling had occurred. There were no differences at dawn when removals do not take place. Lionfish on culled reefs also adopted an alert posture at a greater distance from divers than lionfish on unculled reefs. More crepuscular activity likely leads to greater encounter rates by lionfish with more native fish species because the abundance of reef fish outside of shelters typically peaks at dawn and dusk. Hiding deeper within the reef could also make remaining lionfish less likely to be encountered and more difficult to catch by spearfishers during culling efforts. Shifts in the behaviour of hunted invasive animals might be common and they have implications both for the impact of invasive species and for the design and success of invasive control programs. PMID:24705447

Does reef architectural complexity influence resource availability for a large reef-dwelling invertebrate?

NASA Astrophysics Data System (ADS)

Lozano-Álvarez, Enrique; Luviano-Aparicio, Nelia; Negrete-Soto, Fernando; Barradas-Ortiz, Cecilia; Aguíñiga-García, Sergio; Morillo-Velarde, Piedad S.; Álvarez-Filip, Lorenzo; Briones-Fourzán, Patricia

2017-10-01

In coral reefs, loss of architectural complexity and its associated habitat degradation is expected to affect reef specialists in particular due to changes in resource availability. We explored whether these features could potentially affect populations of a large invertebrate, the spotted spiny lobster Panulirus guttatus, which is an obligate Caribbean coral reef-dweller with a limited home range. We selected two separate large coral reef patches in Puerto Morelos (Mexico) that differed significantly in structural complexity and level of degradation, as assessed via the rugosity index, habitat assessment score, and percent cover of various benthic components. On each reef, we estimated density of P. guttatus and sampled lobsters to analyze their stomach contents, three different condition indices, and stable isotopes (δ15N and δ13C) in muscle. Lobster density did not vary with reef, suggesting that available crevices in the less complex patch still provided adequate refuge to these lobsters. Lobsters consumed many food types, dominated by mollusks and crustaceans, but proportionally more crustaceans (herbivore crabs) in the less complex patch, which had more calcareous macroalgae and algal turf. Lobsters from both reefs had a similar condition (all three indices) and mean δ15N, suggesting a similar quality of diet between reefs related to their opportunistic feeding, but differed in mean δ13C values, reflecting the different carbon sources between reefs and providing indirect evidence of individuals of P. guttatus foraging exclusively over their home reef. Overall, we found no apparent effects of architectural complexity, at least to the degree observed in our less complex patch, on density, condition, or trophic level of P. guttatus.

Characterization of available light for seagrass and patch reef productivity in Sugarloaf Key, Lower Florida Keys

USGS Publications Warehouse

Toro-Farmer, Gerardo; Muller-Karger, Frank E.; Vega-Rodriguez, Maria; Melo, Nelson; Yates, Kimberly K.; Johns, Elizabeth; Cerdeira-Estrada, Sergio; Herwitz, Stan R.

2016-01-01

Light availability is an important factor driving primary productivity in benthic ecosystems, but in situ and remote sensing measurements of light quality are limited for coral reefs and seagrass beds. We evaluated the productivity responses of a patch reef and a seagrass site in the Lower Florida Keys to ambient light availability and spectral quality. In situ optical properties were characterized utilizing moored and water column bio-optical and hydrographic measurements. Net ecosystem productivity (NEP) was also estimated for these study sites using benthic productivity chambers. Our results show higher spectral light attenuation and absorption, and lower irradiance during low tide in the patch reef, tracking the influx of materials from shallower coastal areas. In contrast, the intrusion of clearer surface Atlantic Ocean water caused lower values of spectral attenuation and absorption, and higher irradiance in the patch reef during high tide. Storms during the studied period, with winds >10 m·s−1, caused higher spectral attenuation values. A spatial gradient of NEP was observed, from high productivity in the shallow seagrass area, to lower productivity in deeper patch reefs. The highest daytime NEP was observed in the seagrass, with values of almost 0.4 g·O2·m−2·h−1. Productivity at the patch reef area was lower in May than during October 2012 (mean = 0.137 and 0.177 g·O2·m−2·h−1, respectively). Higher photosynthetic active radiation (PAR) levels measured above water and lower light attenuation in the red region of the visible spectrum (~666 to ~699 nm) had a positive correlation with NEP. Our results indicate that changes in light availability and quality by suspended or resuspended particles limit benthic productivity in the Florida Keys.

Patch reef modeling: a comparison of Devonian and recent examples

DOE Office of Scientific and Technical Information (OSTI.GOV)

Precht, W.F.

In reef research, models have been developed to define variations in the lithic and biotic development of facies. Walker and Alberstadt, and Hoffman and Narkiewicz developed models for growth of ancient reef communities. Although these models form a solid foundation by which patch reefs can be classed and zoned, they are neither complete nor accurate for all reef types. A comparison was made of Lower Devonian patch reefs from the Appalachian basin of New York, New Jersey, and Pennsylvania, and Holocene examples from the Bahamas and Florida Keys to identify the structure, orientation, community variability, and succession of the reefmore » biofacies. The complexion and genesis of the carbonate lithofacies were also studied. Results show similarities; these include the size, areal distribution, 3-D geometry, wave-resistance potential, lateral sequences of facies, sedimentary textures and structures, vertical zonation explained by growth from low-energy to high-energy regimes, biotic diversity, growth habit and form, and postmortem alteration. Thus, when used in conjunction with the traditional models, the recent can serve as the basis for a general model which include most patch reef types. However, these models should not be used as explicit analogs for all Phanerozoic reefs. Knowing and understanding the limitations of these comparative studies are essential to a fuller comprehension of the potential for variations which exist within and between the traditional models.« less

Biological community structure on patch reefs in Biscayne National Park, FL, USA

USGS Publications Warehouse

Kuffner, Ilsa B.; Grober-Dunsmore, Rikki; Brock, John C.; Hickey, T. Don

2010-01-01

Coral reef ecosystem management benefits from continual quantitative assessment of the resources being managed, plus assessment of factors that affect distribution patterns of organisms in the ecosystem. In this study, we investigate the relationships among physical, benthic, and fish variables in an effort to help explain the distribution patterns of organisms on patch reefs within Biscayne National Park, FL, USA. We visited a total of 196 randomly selected sampling stations on 12 shallow (<10 m) patch reefs and measured physical variables (e.g., substratum rugosity, substratum type) and benthic and fish community variables. We also incorporated data on substratum rugosity collected remotely via airborne laser surveying (Experimental Advanced Airborne Research Lidar—EAARL). Across all stations, only weak relationships were found between physical, benthic cover, and fish assemblage variables. Much of the variance was attributable to a “reef effect,” meaning that community structure and organism abundances were more variable at stations among reefs than within reefs. However, when the reef effect was accounted for and removed statistically, patterns were detected. Within reefs, juvenile scarids were most abundant at stations with high coverage of the fleshy macroalgae Dictyota spp., and the calcified alga Halimeda tuna was most abundant at stations with low EAARL rugosity. Explanations for the overwhelming importance of “reef” in explaining variance in our dataset could include the stochastic arrangement of organisms on patch reefs related to variable larval recruitment in space and time and/or strong historical effects due to patchy disturbances (e.g., hurricanes, fishing), as well as legacy effects of prior residents (“priority” effects).

Biological Communities and Geomorphology of Patch Reefs in Biscayne National Park, Florida, U.S.A.

USGS Publications Warehouse

Kuffner, Ilsa B.; Brock, John C.; Grober-Dunsmore, Rikki; Hickey, T. Don; Bonito, Victor; Bracone, Jeremy E.; Wright, C. Wayne

2008-01-01

Coral reef ecosystem management benefits from continual, quantitative assessment of the resources being managed, plus assessment of factors that affect distribution patterns of organisms in the ecosystem. In this study, we investigated the relationships among physical, benthic, and fish variables in effort to help explain the distribution patterns of ecologically and economically important species on twelve patch reefs within Biscayne National Park (BNP), Florida, U.S.A. We visited 196 randomly-located sampling stations across twelve shallow (< 10m) patch reefs, using SCUBA to conduct our surveys. We measured physical variables (e.g., substratum type), estimated the percent cover of benthic community members (e.g., coral, algae), and counted and estimated mean size for each fish species observed. We also used high-density bathymetric data collected remotely via airborne laser surveying (Experimental Advanced Airborne Research Lidar (EAARL)) to calculate rugosity (bumpiness) of the reef habitat. Here we present our findings visually by graphing our quantitative community and physical structure data simultaneously in a GIS map format. You will see that biological organisms arrange themselves on each patch reef in a non-random manner. For example, many species of fish prefer to locate themselves in areas of the reef where the rugosity index is high. Rugose parts of the reef provide them with good hiding places from predators. These maps (and the data used to create them) are permanent records of the status of reef resources found on these twelve patch reefs in BNP as of September, 2003. The survey data found in the shapefile located on this CD product includes benthic percent cover data for algae, coral, encrusting invertebrates, and substratum type, in addition to gorgonian abundance and volume, total fish abundance and species richness, and specific counts for Acanthurids (surgeonfish), Scarids (parrotfish), Lutjanids (snappers), Haemulids (grunts), Serranids (groupers), and Pomacentrids (damselfish).

Ecological characteristics of coral patch reefs at Midway Atoll, Northwestern Hawaiian Islands

USGS Publications Warehouse

Schroeder, R.E.; Parrish, J.D.

2006-01-01

Ecological aspects of coral patch reefs were studied from 1981 to 1985 in Welles Harbor, Midway Atoll. Water temperatures varied from 17??C in February to 28??C in August. Sizes of reefs studied were described by mean area (59 m2), mean volume (52 m3), vertical relief (<1 m), and inter-reef isolation (100 m). Considerable temporal change in reef size occurred due to large winter swells shifting bottom sand. Six common species accounted for 70% of all individual fish visually censused over 4 years. Overall fish assemblage composition ranged from 11 to 46 fish/10 m2, from 3 to 14 species. Numerical abundance and species richness for all fish (pooled) strongly correlated with physical reef substrate characteristics of area, volume, and vertical relief during summer. Species diversity (H') was not correlated with the substrate variables, suggesting similarity in the structure of fish communities among different sizes of patch reefs. Daily surveillance for presence of large transient taxa suggested that visits by sharks, large jacks, monk seals, sea turtles, and dolphins were infrequent. Density estimates were made for all conspicuous invertebrate megafauna during initial and final assessments. Six common taxa provided 90% of these counts; nearly half were sea urchins. Percent cover also was recorded for coral and algal species on the patch reefs. Cover by live coral was low (about 7%) and dominated by a few species. Mean algal cover ranged from 32 to 77%. Such information on ecological characteristics of reefs may aid in understanding complex ecological processes and provides an earlier reference for current ecosystem studies.

An overview of Miocene reefs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jordan, C.F. Jr.; Colgan, M.W.; Frost, S.H.

1990-05-01

Miocene reefs lived approximately within the latitudes of 27{degree}S to 48{degree}N compared with 25{degree}S and 32{degree}N for Holocene reefs. This expansion of reef-growing environments was the result of warm Miocene climates, aided by a eustatic sea level rise and tectonic styles that provided numerous foundations for reef development. The majority of Miocene reefs are found in three main areas: (1) Southeast Asia and the western Pacific, (2) the Mediterranean-Middle East, and (3) Middle America and the Caribbean. These regions, with their distinctive suites of coral and foramineral species, formed three biological provinces; respectively, they are the Indo-Pacific, Tethyan, and Westernmore » Atlantic provinces. Miocene reefs in Southeast Asia occur in several foreland basins as patch reef complexes on paleohighs and as barrier reefs in back-arc basins. Those reefs in the Mediterranean occur as fringing reefs, middle-shelf patch reefs, or as barrier reefs on the edges of tectonic blocks associated with Alpine thrust belts. Most reefs in the Caribbean grew on isolated open-ocean highs of volcanic origin. Miocene reefs display a diversity of framework types: (1) coral-encrusting, red algal boundstones with diverse coral faunas, (2) branching coral-encrusting, red algal boundstones with a limited Poritid fauna, (3) encrusting red algal boundstones. Barrier reef systems are especially rich in encrusting red algae and robust corals; grainstones are common as interbedded sediment. Patch reef complexes, however, display muddy carbonate textures, may have less diverse coral faunas, and commonly have larger foraminifera. The global distribution of Miocene reefs is important because (1) it provides insight into a paleoclimatic view of the earth during a major greenhouse stage and (2) Miocene buildups, such as the Arun (EUR of 14 tcf) and Bima fields (EUR of about 100 MMBO), are exploration targets.« less

LIDAR optical rugosity of coral reefs in Biscayne National Park, Florida

USGS Publications Warehouse

Brock, J.C.; Wright, C.W.; Clayton, T.D.; Nayegandhi, A.

2004-01-01

The NASA Experimental Advanced Airborne Research Lidar (EAARL), a temporal waveform-resolving, airborne, green wavelength LIDAR (light detection and ranging), is designed to measure the submeter-scale topography of shallow reef substrates. Topographic variability is a prime component of habitat complexity, an ecological factor that both expresses and controls the abundance and distribution of many reef organisms. Following the acquisition of EAARL coverage over both mid-platform patch reefs and shelf-margin bank reefs within Biscayne National Park in August 2002, EAARL-based optical indices of topographic variability were evaluated at 15 patch reef and bank reef sites. Several sites were selected to match reefs previously evaluated in situ along underwater video and belt transects. The analysis used large populations of submarine topographic transects derived from the examination of closely spaced laser spot reflections along LIDAR raster scans. At all 15 sites, each LIDAR transect was evaluated separately to determine optical rugosity (Rotran), and the average elevation difference between adjacent points (Av(??E ap)). Further, the whole-site mean and maximum values of Ro tran and Av(??Eap) for the entire population of transects at each analysis site, along with their standard deviations, were calculated. This study revealed that the greater habitat complexity of inshore patch reefs versus outer bank reefs results in relative differences in topographic complexity that can be discerned in the laser returns. Accordingly, LIDAR sensing of optical rugosity is proposed as a complementary new technique for the rapid assessment of shallow coral reefs. ?? Springer-Verlag 2004.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rosen, M.R.; Collins, L.B.; Wyrwoll, K.H.

The Houtman Abrolhos reefs are located 80 km off the west coast of Australia between latitudes 28 and 29{degree} south. The islands are situated on three Pleistocene carbonate reef platforms which rise above the surrounding shelf. The modern coral reefs are close to the geographic limit for coral growth in the southern hemisphere and survive due to the presence of the Leeuwin current (a poleward-flowing warm stream). Two major shallow-water benthic communities coexist in the Abrolhos: a macroalgal-dominated community on the windward platform margins and a coral-dominated community on the leeward margins. These communities overlap-particularly in the platform lagoons, wheremore » competition between macroalgae and corals is intense. This interaction has been suggested as a major factor controlling the growth of cord reefs at high latitudes. The Holocene carbonate sediments lack nonskeletal components and are dominated by coral and coralline algal fragments with subordinate molluskan and echinoderm debris. The accumulations can be grouped into the following major facies: (1) coral framestone and coralline algal/serpulid boundstone, (2) submarine sand sheets, (3) subaerial coral storm ridges, (4-) peritidal to subtidal shingle and rubble veneers composed of dominantly coral debris, and (5) eolian dunes and beach sand. The Holocene sediment is a thin (< 2 m) veneer on the Pleistocene reef platform, which is emergent as small islands. The Pleistocene platform is composed of reef facies that can be directly related to the Holocene sediments. The platform is composed of framestone and boundstone facies (corals and coralline algal/serpulid facies), rudstones (submarine coral rubble facies), planar-bedded skeletal grainstones dipping 12-13{degree} (submarine sand sheet and peritidal shingle facies), and large 15-m-high eolianite dunes (eolian dune facies).« less

Late Miocene Coral faunas of Iran (Zagros, Aghar, Firuz abad, Fars) palaeoecology and palaeobiogeography

NASA Astrophysics Data System (ADS)

Dehbozorgi, M.; Yazdi, M.; Torabi, H.

2009-04-01

Late Miocene Corals assemblage from Zagros Iran are investigated with respect to their palaeoecology and palaeobiogeography implications. This Corals are compared with fauna from Mediterranean Tethys and the Indopacific. Small foraminifers are used for biogeography and to support paleoecology interpretation. The studied section situated in the Zagros Mishan F.m is last depositions sea. A distinct horizon characterized by Porites- Antiguastrea assemblage associated Milliolid and Rotalia is interpreted a shallow bioclastic shoal. Patch reef with a porites and faviidae assemblage are a common feature of Oligocene and Miocene coral occurrence and indicate water depth of less than 20m. The diversity of corals in this area are low and all corals are hematypic. Miocene Corals from Mishan F.m Comprise 7 genera and occur in the single horizon or patch reef. This Corals and patch reefs are compared with corals and patch reefs in Qom F.m Central Iran. This corals report from this section: Antiguastrea sp., Monastrea sp., Favites sp., Porites sp., Dichocoenia sp., Asterohelia sp., Leptoria sp. Keywords: Miocene- Iran- Mishan-Zagros- Formation- Tethys seaway- Corals- Palaeoecology- palaeobiogeography.

Great Barrier Reef, Queensland, Australia

NASA Technical Reports Server (NTRS)

1990-01-01

This detailed view of the Great Barrier Reef, Queensland, Australia (19.5S, 149.5E) shows several small patch reefs within the overall reef system. The Great Barrier Reef, largest in the world, comprises thousands of individual reefs of great variety and are closely monitored by marine ecologists. These reefs are about 6000 years old and sit on top of much older reefs. The most rapid coral growth occurs on the landward side of the reefs.

A New Perspective: Assessing the Spatial Distribution of Coral Bleaching with Unmanned Low Altitude Remote Sensing Systems

NASA Astrophysics Data System (ADS)

Levy, J.; Franklin, E. C.; Hunter, C. L.

2016-12-01

Coral reefs are biodiversity hotspots that are vital to the function of global economic and biological processes. Coral bleaching is a significant contributor to the global decline of reefs and can impact an expansive reef area over short timescales. In order to understand the dynamics of coral bleaching and how these stress events impact reef ecosystems, it is important to conduct rapid bleaching surveys at functionally important spatial scales. Due to the inherent heterogeneity, size, and in some cases, remoteness of coral reefs, it is difficult to routinely monitor coral bleaching dynamics before, during, and after bleaching. Additionally, current in situ survey methods only collect snippets of discrete reef data over small reef areas, which are unable to accurately represent the reef as a whole. We present a new technique using small unmanned aerial systems (sUAS) as cost effective, efficient monitoring tools that target small to intermediate-scale reef dynamics to understand the spatial distribution of bleached coral colonies during the 2015 bleaching event on patch reefs in Kaneohe Bay, Oahu. Overlapping low altitude aerial images were collected at four reefs during the bleaching period and processed using Structure-from-Motion techniques to produce georeferenced and spatially accurate orthomosaics of complete reef areas. Mosaics were analyzed using manual and heuristic neural network classification schemes to identify comprehensive populations of bleached and live coral on each patch reef. We found that bleached colonies had random and clumped distributions on patch reefs in Kaneohe Bay depending on local environmental conditions. Our work demonstrates that sUAS provide a low cost, efficient platform that can rapidly and repeatedly collect high-resolution imagery (1 cm/pixel) and map large areas of shallow reef ecosystems (5 hectares). This study proves the feasibility of utilizing sUAS as a tool to collect spatially rich reef data that will provide reef scientists a new perspective on meso-scale coral reef dynamics. We envision that similar low altitude aerial surveys will be incorporated as a standard component of shallow-water reef studies, especially on reefs too dangerous or remote for in situ surveys.

Assessing the spatial distribution of coral bleaching using small unmanned aerial systems

NASA Astrophysics Data System (ADS)

Levy, Joshua; Hunter, Cynthia; Lukacazyk, Trent; Franklin, Erik C.

2018-06-01

Small unmanned aerial systems (sUAS) are an affordable, effective complement to existing coral reef monitoring and assessment tools. sUAS provide repeatable low-altitude, high-resolution photogrammetry to address fundamental questions of spatial ecology and community dynamics for shallow coral reef ecosystems. Here, we qualitatively describe the use of sUAS to survey the spatial characteristics of coral cover and the distribution of coral bleaching across patch reefs in Kānéohe Bay, Hawaii, and address limitations and anticipated technology advancements within the field of UAS. Overlapping sub-decimeter low-altitude aerial reef imagery collected during the 2015 coral bleaching event was used to construct high-resolution reef image mosaics of coral bleaching responses on four Kānéohe Bay patch reefs, totaling 60,000 m2. Using sUAS imagery, we determined that paled, bleached and healthy corals on all four reefs were spatially clustered. Comparative analyses of data from sUAS imagery and in situ diver surveys found as much as 14% difference in coral cover values between survey methods, depending on the size of the reef and area surveyed. When comparing the abundance of unhealthy coral (paled and bleached) between sUAS and in situ diver surveys, we found differences in cover from 1 to 49%, depending on the depth of in situ surveys, the percent of reef area covered with sUAS surveys and patchiness of the bleaching response. This study demonstrates the effective use of sUAS surveys for assessing the spatial dynamics of coral bleaching at colony-scale resolutions across entire patch reefs and evaluates the complementarity of data from both sUAS and in situ diver surveys to more accurately characterize the spatial ecology of coral communities on reef flats and slopes.

Seismic evidence of glacial-age river incision into the Tahaa barrier reef, French Polynesia

USGS Publications Warehouse

Toomey, Michael; Woodruff, Jonathan D.; Ashton, Andrew D.; Perron, J. Taylor

2016-01-01

Rivers have long been recognized for their ability to shape reef-bound volcanic islands. On the time-scale of glacial–interglacial sea-level cycles, fluvial incision of exposed barrier reef lagoons may compete with constructional coral growth to shape the coastal geomorphology of ocean islands. However, overprinting of Pleistocene landscapes by Holocene erosion or sedimentation has largely obscured the role lowstand river incision may have played in developing the deep lagoons typical of modern barrier reefs. Here we use high-resolution seismic imagery and core stratigraphy to examine how erosion and/or deposition by upland drainage networks has shaped coastal morphology on Tahaa, a barrier reef-bound island located along the Society Islands hotspot chain in French Polynesia. At Tahaa, we find that many channels, incised into the lagoon floor during Pleistocene sea-level lowstands, are located near the mouths of upstream terrestrial drainages. Steeper antecedent topography appears to have enhanced lowstand fluvial erosion along Tahaa's southwestern coast and maintained a deep pass. During highstands, upland drainages appear to contribute little sediment to refilling accommodation space in the lagoon. Rather, the flushing of fine carbonate sediment out of incised fluvial channels by storms and currents appears to have limited lagoonal infilling and further reinforced development of deep barrier reef lagoons during periods of highstand submersion.

Stratigraphy and evolution of emerged Pleistocene reefs at the Red Sea coast of Sudan

NASA Astrophysics Data System (ADS)

Hamed, Basher; Bussert, Robert; Dominik, Wilhelm

2016-02-01

Emerged Pleistocene coral reefs constitute a prominent landform along the Red Sea coast of Sudan. They are well exposed with a thickness of up to 12 m and extend over a width of about 3 km parallel to the coastline. Four major reef units that represent different reef zones are distinguished. Unit 1 is located directly at the coastline and is assigned to the rock-reef rim, while unit 2 represents the reef-front zone. Unit 3 is attributed to the reef-flat zone and unit 4 to the back-reef zone. The stratigraphic position and age of the four units respectively the facies zones are based on field relationships and δ18O analysis. Results of δ18O analysis of coral, gastropod and bivalve samples were correlated to previous age dating of correlative reefs in Sudan and other parts of the Red Sea region. Estimation of reef ages was mainly based on δ18O values of the reef-front zone (unit 2) and the observed sedimentary succession of the reefs. δ18O values of two Porites coral samples from the reef-front zone strongly suggest equivalent ages of 120 and 122 ka that correspond to marine isotope stage MIS 5.5. Based on δ18O values and the field relationship to the reef-front zone, ages of reef-flat zone (unit 3) and back-reef zone (unit 4) could be assigned to MIS 9 and MIS 7 respectively. MIS 5.1 is suggested for the reef-rock rim (unit 1). The relationship of the reef zones to individual MIS might be explained by the predominance of a specific zone during a certain stage, while other facies were less well developed and/or later eroded by wave action. The reef unit most distal from the recent coastline formed during interglacial stage MIS 7, while former studies assign this unit to interglacial stage MIS 9. Unique flourishing, high diversity and excellent preservation of corals in the back-reef unit of MIS 7 reflect growth in troughs landward of the oldest reef-flat formed during previous interglacial stage MIS 9.

Monitoring the coral disease, plague type II, on coral reefs in St. John, U.S. Virgin Islands

USGS Publications Warehouse

Miller, J.; Rogers, C.; Waara, R.

2003-01-01

In July 1997, conspicuous white patches of necrotic tissue and bare skeleton began to appear on scleractinian corals in several bays around St. John, US Virgin Islands. Analysis of diseased coral tissue from five different species confirmed the presence of a Sphingomonas-like bacterium, the pathogen for plague type II. To date, 14 species of hard corals have been affected by plague type II around St. John. This disease was monitored at Haulover and Tektite Reefs at depths of 7-12 meters. The study site at Tektite Reef has >50% cover by scleractinian corals with 90% of hard corals being composed of Montastraea annular is. Monthly surveys at Tektite Reef from December 1997 to May 2001 documented new incidence of disease (bare white patches of skeleton) every month with associated loss of living coral and 90.5% of all disease patches occurred on M. annularis. The frequency of disease within transects ranged from 3 to 58%, and the area of disease patches ranged from 0.25 to 9000 cm2. The average percent cover by the disease within 1 m2 ranged from 0.01% (?? 0.04 SD) to 1.74% (?? 9.08 SD). Photo-monitoring of 28 diseased corals of 9 species begun in September 1997 at Haulover Reef revealed no recovery of diseased portions with all necrotic tissue being overgrown rapidly by turf algae, usually within less than one month. Most coral colonies suffered partial mortality. Very limited recruitment (e.g., of Agaricia spp., Favia spp. and sponges) has been noted on the diseased areas. This coral disease has the potential to cause more loss of live coral on St. John reefs than any other stress to date because it targets the dominant reef building species, M. annularis.

Hosts of the Plio-Pleistocene past reflect modern-day coral vulnerability

PubMed Central

van Woesik, Robert; Franklin, Erik C.; O'Leary, Jennifer; McClanahan, Tim R.; Klaus, James S.; Budd, Ann F.

2012-01-01

The risk of global extinction of reef-building coral species is increasing. We evaluated extinction risk using a biological trait-based resiliency index that was compared with Caribbean extinction during the Plio-Pleistocene, and with extinction risk determined by the International Union for Conservation of Nature (IUCN). Through the Plio-Pleistocene, the Caribbean supported more diverse coral assemblages than today and shared considerable overlap with contemporary Indo-Pacific reefs. A clear association was found between extant Plio-Pleistocene coral genera and our positive resilience scores. Regional extinction in the past and vulnerability in the present suggests that Pocillopora, Stylophora and foliose Pavona are among the most susceptible taxa to local and regional isolation. These same taxa were among the most abundant corals in the Caribbean Pliocene. Therefore, a widespread distribution did not equate with immunity to regional extinction. The strong relationship between past and present vulnerability suggests that regional extinction events are trait-based and not merely random episodes. We found several inconsistencies between our data and the IUCN scores, which suggest a need to critically re-examine what constitutes coral vulnerability. PMID:22337694

New Prespective Paleogeography of East Java Basin; Implicationrespond to Oil and Gas Eksploration at Kujung Formation Carbonate Reservoar

NASA Astrophysics Data System (ADS)

Aprilana, C.; Premonowati; S, Hanif I.; Choirotunnisa; Shirly, A.; Utama, M. K.; Sinulingga, Y. R.; Syafitra, F.

2018-03-01

Paleogeography is one of critical points that always less considered by explorationist in the world. Almost all of the consideration is focused on trapping mechanism. Paleogeography is guidance in understanding both of physical and chemical of rock characteristic which will correlate with its depositional environment. Integration of various geological and geophysical data such as; tectonic, structural geology, stratigraphy, lithology, and biostratigraphy will lead us to a better understanding of rock characteristics. Six paleogeographic interpretations was made consist of; Early Tertiary (P5-56-55 ma), Middle Eocene (P14-41 ma), Late Oiligocene (P22-25.5 ma), Early Miocene (N7-16.5 ma), Middle Miocene (N9-14.5 ma), and Pleistocene (NN19-1.5 ma). That six paleogeographic interpretations are assumed represent the paleogeographic evolution of East Java Basin time after time. In Middle Eocene time, it would be more than hundred possibilities regarding the location where the formation deposited. This would be controlled by the existence of some local structural paleohighs and horsts which oriented NW-SE followed by their own sedimentary transportation path. With assumption that hydrocarbon generation was occurred in 15 Ma and the depth of maturation window lies on about 2,500 m depth. Therefore, the possibility of source rock maturation is high, due to almost of the clastics sediment of Ngimbang deposited into the series of grabens. The Kujung reef types simplified defines and categorize into; 1) Patch Reef 2) Berrier Reef 3) Pinnacle Reef Over Isolated Reef. Kujung Carbonates were deposited in Early Miocene when regional transgression occurred. The depositional environments were dominated by shallow marine littoral-sublittoral. Generally, the reservoir quality of this Kujung Carbonate shows fair to good quality, in range7-32% porosity, and 1-1400 mD permeability (internal SKK Migas data).

Using Fish Population Metrics to Compare the Effects of Artificial Reef Density.

PubMed

Froehlich, Catheline Y M; Kline, Richard J

2015-01-01

Artificial reefs continue to be added as habitat throughout the world, yet questions remain about how reef design affects fish diversity and abundance. In the present study, the effects of reef density were assessed for fish communities and sizes of economically valuable Lutjanus campechanus 13 km off Port Mansfield, Texas, at a reef composed of more than 4000 concrete culverts. The study spanned from May to June in 2013 and 2014, and sites sampled included natural reefs, bare areas, and varying culvert patch density categories, ranging from 1-190 culverts. Abundances of adults and species evenness of juvenile populations differed between the years. Fish communities did not significantly differ among density categories; however, highest species richness and total abundances were observed at intermediate culvert densities and at natural reefs. Whereas the abundance of L. campechanus did not differ among density categories, mean total lengths of L. campechanus were greatest at the lower density. Our findings suggest that reefs should be deployed with intermediate patch density of 71-120 culverts in a 30-m radius to yield the highest fish abundances.

Using Fish Population Metrics to Compare the Effects of Artificial Reef Density

PubMed Central

2015-01-01

Artificial reefs continue to be added as habitat throughout the world, yet questions remain about how reef design affects fish diversity and abundance. In the present study, the effects of reef density were assessed for fish communities and sizes of economically valuable Lutjanus campechanus 13 km off Port Mansfield, Texas, at a reef composed of more than 4000 concrete culverts. The study spanned from May to June in 2013 and 2014, and sites sampled included natural reefs, bare areas, and varying culvert patch density categories, ranging from 1–190 culverts. Abundances of adults and species evenness of juvenile populations differed between the years. Fish communities did not significantly differ among density categories; however, highest species richness and total abundances were observed at intermediate culvert densities and at natural reefs. Whereas the abundance of L. campechanus did not differ among density categories, mean total lengths of L. campechanus were greatest at the lower density. Our findings suggest that reefs should be deployed with intermediate patch density of 71–120 culverts in a 30-m radius to yield the highest fish abundances. PMID:26422472

Variation in larval properties of the Atlantic brooding coral Porites astreoides between different reef sites in Bermuda

NASA Astrophysics Data System (ADS)

de Putron, Samantha J.; Lawson, Julia M.; White, Kascia Q. L.; Costa, Matthew T.; Geronimus, Miriam V. B.; MacCarthy, Anne

2017-06-01

Recent research has documented phenotypic differences among larvae released from corals with a brooding reproductive mode, both among species and within broods from a single species. We studied larvae released from the common Atlantic coral Porites astreoides in Bermuda to further evaluate phenotypic variability. Inter-site differences were investigated in larvae from conspecifics at a rim and patch reef site. Larvae were collected daily for one lunar cycle from several colonies per site each year over 5 yr. Larval volume varied with reef site of origin, with colonies from the rim reef site producing larger larvae than colonies from the patch reef site. This inter-site variation in larval size could not be explained by corallite size and may be a response to different environmental conditions at the sites. Larvae from both reef sites also varied in size depending on lunar day of release over 4 yr of study. Regardless of site of origin, smaller larvae were released earlier in the lunar cycle. Over 1 yr of study, lipid and zooxanthellae content and settlement success after 48 h covaried with larval size. However, there may be a trade-off between larger larvae and reduced fecundity. Overall, larvae released from colonies from the rim reef site were larger and had greater settlement success than those from colonies from the patch reef site. This study documents larval phenotypic variability and a distinct inter-site difference in larval ecology among conspecifics within the same geographic area, which may have implications for recruitment success, population dynamics, and resilience.

Coral reef sedimentation on Rodrigues and the Western Indian Ocean and its impact on the carbon cycle.

PubMed

Rees, Siwan A; Opdyke, Bradley N; Wilson, Paul A; Fifield, L Keith

2005-01-15

Coral reefs in the southwest Indian Ocean cover an area of ca. 18,530 km2 compared with a global reef area of nearly 300,000 km2. These regions are important as fishing grounds, tourist attractions and as a significant component of the global carbon cycle. The mass of calcium carbonate stored within Holocene neritic sediments is a number that we are only now beginning to quantify with any confidence, in stark contrast to the mass and sedimentation rates associated with pelagic calcium carbonate, which have been relatively well defined for decades. We report new data that demonstrate that the reefs at Rodrigues, like those at Reunion and Mauritius, only reached a mature state (reached sea level) by 2-3 ka: thousands of years later than most of the reefs in the Australasian region. Yet field observations show that the large lagoon at Rodrigues is already completely full of carbonate detritus (typical lagoon depth less than 1 m at low spring tide). The presence of aeolian dunes at Rodrigues indicates periodic exposure of past lagoons throughout the Pleistocene. The absence of elevated Pleistocene reef deposits on the island indicates that the island has not been uplifted. Most Holocene reefs are between 15 and 20 m in thickness and those in the southwest Indian Ocean appear to be consistent with this observation. We support the view that the CO2 flux associated with coral-reef growth acts as a climate change amplifier during deglaciation, adding CO2 to a warming world. southwest Indian Ocean reefs could have added 7-10% to this global flux during the Holocene.

A multiscale analysis of coral reef topographic complexity using lidar-derived bathymetry

USGS Publications Warehouse

Zawada, D.G.; Brock, J.C.

2009-01-01

Coral reefs represent one of the most irregular substrates in the marine environment. This roughness or topographic complexity is an important structural characteristic of reef habitats that affects a number of ecological and environmental attributes, including species diversity and water circulation. Little is known about the range of topographic complexity exhibited within a reef or between different reef systems. The objective of this study was to quantify topographic complexity for a 5-km x 5-km reefscape along the northern Florida Keys reef tract, over spatial scales ranging from meters to hundreds of meters. The underlying dataset was a 1-m spatial resolution, digital elevation model constructed from lidar measurements. Topographic complexity was quantified using a fractal algorithm, which provided a multi-scale characterization of reef roughness. The computed fractal dimensions (D) are a measure of substrate irregularity and are bounded between values of 2 and 3. Spatial patterns in D were positively correlated with known reef zonation in the area. Landward regions of the study site contain relatively smooth (D ??? 2.35) flat-topped patch reefs, which give way to rougher (D ??? 2.5), deep, knoll-shaped patch reefs. The seaward boundary contains a mixture of substrate features, including discontinuous shelf-edge reefs, and exhibits a corresponding range of roughness values (2.28 ??? D ??? 2.61). ?? 2009 Coastal Education and Research Foundation.

Small-Boat Noise Impacts Natural Settlement Behavior of Coral Reef Fish Larvae.

PubMed

Simpson, Stephen D; Radford, Andrew N; Holles, Sophie; Ferarri, Maud C O; Chivers, Douglas P; McCormick, Mark I; Meekan, Mark G

2016-01-01

After a pelagic larval phase, settlement-stage coral reef fish must locate a suitable reef habitat for juvenile life. Reef noise, produced by resident fish and invertebrates, provides an important cue for orientation and habitat selection during this process, which must often occur in environments impacted by anthropogenic noise. We adapted an established field-based protocol to test whether recorded boat noise influenced the settlement behavior of reef fish. Fewer fish settled to patch reefs broadcasting boat + reef noise compared with reef noise alone. This study suggests that boat noise, now a common feature of many reefs, can compromise critical settlement behavior of reef fishes.

Holocene core logs and site methods for modern reef and head-coral cores - Dry Tortugas National Park, Florida

USGS Publications Warehouse

Hickey, Todd D.; Reich, Christopher D.; DeLong, Kristine L.; Poore, Richard Z.; Brock, John C.

2013-01-01

The Dry Tortugas are a series of islands, banks, and channels on a carbonate platform off the west end of the Florida Keys. Antecedent topography of the Dry Tortugas reflects carbonate accumulations of the last interglacial (marine isotope substage 5e, ~ 125,000 years ago, ka) when sea level was ~ 6 to 7 meters (m) higher than present (Schrag and others, 2002). The substage 5e surface was subsequently lithified and modified during subaerial exposure associated with lower sea level from ~ 120 ka to 8 ka. The lithified late Pleistocene carbonates are known as the Key Largo Limestone, a coral reef (Hoffmeister and Multer, 1964; Multer and others, 2002), and the Miami Limestone, a tidal-bar oolite (Sanford, 1909; Hoffmeister, 1974). The Holocene and modern sediments and reefs of the Dry Tortugas then accreted during the rise of sea level associated with the end of the last glacial and the start of the current interglacial (marine isotope Stage 1). With the exception of a half dozen or so islands, the Dry Tortugas region has been submerged for approximately 8,000 years, allowing conditions suitable for coral reef formation once again. The Holocene reef accumulation varies in thickness due to the antecedent topography. The reefs are composed of massive head corals such as species of Montastraea, Siderastrea, and Diploria (Swart and others, 1996; Cohen and McConnaughey, 2003) and rest atop the Pleistocene Key Largo Limestone high (Shinn and others, 1977). The coral reefs within the Dry Tortugas represent a windward reef margin relative to dominant wind and wave energies (Hine and Mullins, 1983; Mallinson and others, 1997; Mallinson and others, 2003).

50 CFR 622.2 - Definitions and acronyms.

Code of Federal Regulations, 2014 CFR

2014-10-01

... where coral growth abounds, including patch reefs, outer bank reefs, deep water banks, and hard bottoms... muscle tissue, of a spiny lobster along the top middorsal line (middle of the back) to the rearmost...

Mortality of shallow reef corals in the western Arabian Gulf following aerial exposure in winter

NASA Astrophysics Data System (ADS)

Fadlallah, Y. H.; Allen, K. W.; Estudillo, R. A.

1995-05-01

Aerial exposure of patch reef corals occurred in Tarut Bay, western Arabian Gulf, (Saudi Arabia) between December 1991 and May 1992, and coincided with extreme low spring tides (below the predicted lowest astronomical tide-LAT). Colonies of Acropora and Stylophora occurring at the highest levels on the tops of patch reef platforms were most affected by the low tides. Corals fully exposed to air suffered total mortality, whereas those not fully exposed suffered tissue damage to their upper parts. Exposure occurred during winter months when air and water temperatures are at their lowest in the gulf. Coupling of extremely low spring tides with wind-induced negative surges (below LAT) are not regular events but are not infrequent. Cold temperatures and exposure may act in concert to produce disproportionate mortalities of reef flat corals in the shallow coastal areas of eastern Saudi Arabia. It is highly unlikely that the Gulf War oil spill played any role in the observed damage to reef corals in the Gulf in 1992.

Population genetic structure and connectivity in the widespread coral-reef fish Abudefduf saxatilis: the role of historic and contemporary factors

NASA Astrophysics Data System (ADS)

Piñeros, Victor Julio; Gutiérrez-Rodríguez, Carla

2017-09-01

We assessed geographic patterns of genetic variation and connectivity in the widely distributed coral-reef fish Abudefduf saxatilis at different temporal scales. We sequenced two mitochondrial regions (cytochrome b and control region) and genotyped 12 microsatellite loci in a total of 296 individuals collected from 14 reefs in two biogeographic provinces in the tropical western Atlantic Ocean and from three provinces within the Caribbean Sea. We used phylogeography, population genetics and coalescent methods to assess the potential effects of climatic oscillations in the Pleistocene and contemporary oceanographic barriers on the population genetic structure and connectivity of the species. Sequence analyses indicated high genetic diversity and a lack of genetic differentiation throughout the Caribbean and between the two biogeographic provinces. Different lines of evidence depicted demographic expansions of A. saxatilis populations dated to the Pleistocene. The microsatellites exhibited high genetic diversity, and no genetic differentiation was detected within the Caribbean; however, these markers identified a genetic discontinuity between the two western Atlantic biogeographic provinces. Migration estimates revealed gene flow across the Amazon-Orinoco Plume, suggesting that genetic divergence may be promoted by differential environmental conditions on either side of the barrier. The climatic oscillations of the Pleistocene, together with oceanographic barriers and the dispersal potential of the species, constitute important factors determining the geographic patterns of genetic variation in A. saxatilis.

Species-area relationships in coral communities: evaluating mechanisms for a commonly observed pattern

NASA Astrophysics Data System (ADS)

Huntington, B. E.; Lirman, D.

2012-12-01

Landscape-scale attributes of patch size, spatial isolation, and topographic complexity are known to influence diversity and abundance in terrestrial and marine systems, but remain collectively untested for reef-building corals. To investigate the relationship between the coral assemblage and seascape variation in reef habitats, we took advantage of the distinct boundaries, spatial configurations, and topographic complexities among artificial reef patches to overcome the difficulties of manipulating natural reefs. Reef size (m2) was found to be the foremost predictor of coral richness in accordance with species-area relationship predictions. Larger reefs were also found to support significantly higher colony densities, enabling us to reject the null hypothesis of random placement (a sampling artifact) in favor of target area predictions that suggest greater rates of immigration on larger reefs. Unlike the pattern previously documented for reef fishes, topographic complexity was not a significant predictor of any coral assemblage response variable, despite the range of complexity values sampled. Lastly, coral colony density was best explained by both increasing reef size and decreasing reef spatial isolation, a pattern found exclusively among brooding species with shorter larval dispersal distances. We conclude that seascape attributes of reef size and spatial configuration within the seascape can influence the species richness and abundance of the coral community at relatively small spatial scales (<1 km). Specifically, we demonstrate how patterns in the coral communities that have naturally established on these manipulated reefs agree with the target area and island biogeography mechanisms to drive species-area relationships in reef-building corals. Based on the patterns documented in artificial reefs, habitat degradation that results in smaller, more isolated natural reefs may compromise coral diversity.

Global variations of large megathrust earthquake rupture characteristics

PubMed Central

Kanamori, Hiroo

2018-01-01

Despite the surge of great earthquakes along subduction zones over the last decade and advances in observations and analysis techniques, it remains unclear whether earthquake complexity is primarily controlled by persistent fault properties or by dynamics of the failure process. We introduce the radiated energy enhancement factor (REEF), given by the ratio of an event’s directly measured radiated energy to the calculated minimum radiated energy for a source with the same seismic moment and duration, to quantify the rupture complexity. The REEF measurements for 119 large [moment magnitude (Mw) 7.0 to 9.2] megathrust earthquakes distributed globally show marked systematic regional patterns, suggesting that the rupture complexity is strongly influenced by persistent geological factors. We characterize this as the existence of smooth and rough rupture patches with varying interpatch separation, along with failure dynamics producing triggering interactions that augment the regional influences on large events. We present an improved asperity scenario incorporating both effects and categorize global subduction zones and great earthquakes based on their REEF values and slip patterns. Giant earthquakes rupturing over several hundred kilometers can occur in regions with low-REEF patches and small interpatch spacing, such as for the 1960 Chile, 1964 Alaska, and 2011 Tohoku earthquakes, or in regions with high-REEF patches and large interpatch spacing as in the case for the 2004 Sumatra and 1906 Ecuador-Colombia earthquakes. Thus, combining seismic magnitude Mw and REEF, we provide a quantitative framework to better represent the span of rupture characteristics of great earthquakes and to understand global seismicity. PMID:29750186

Pulley reef: a deep photosynthetic coral reef on the West Florida Shelf, USA

USGS Publications Warehouse

Culter, J.K.; Ritchie, K.B.; Earle, S.A.; Guggenheim, D.E.; Halley, R.B.; Ciembronowicz, K.T.; Hine, A.C.; Jarrett, B.D.; Locker, S.D.; Jaap, W.C.

2006-01-01

Pulley Reef (24°50′N, 83°40′W) lies on a submerged late Pleistocene shoreline feature that formed during a sea-level stillstand from 13.8 to 14.5 ka (Jarrett et al. 2005). The reef is currently 60–75 m deep, exhibits 10–60% coral cover, and extends over approximately 160 km2 of the sea floor. Zooxanthellate corals are primarily Agaricia lamarcki, A. fragilis, Leptoseris cucullata, and less common Madracis formosa, M. pharensis, M. decactis, Montastraea cavernosa, Porites divaricata, Scolymia cubensis and Oculina tenella. Coralline algae are comparable in abundance to stony corals. Other macroalgae include Halimeda tuna, Dictyota divaricata, Lobophora variegata, Ventricatri ventricosa, Verdigelas pelas, and Kallymenia sp. Anadyomene menziesii is abundant. The reef provides a habitat for organisms typically observed at much shallower depths, and is the deepest known photosynthetic coral reef on the North America continental shelf (Fig. 1).

Is proximity to land-based sources of coral stressors an appropriate measure of risk to coral reefs? An example from the Florida Reef Tract.

PubMed

Lirman, Diego; Fong, Peggy

2007-06-01

Localized declines in coral condition are commonly linked to land-based sources of stressors that influence gradients of water quality, and the distance to sources of stressors is commonly used as a proxy for predicting the vulnerability and future status of reef resources. In this study, we evaluated explicitly whether proximity to shore and connections to coastal bays, two measures of potential land-based sources of disturbance, influence coral community and population structure, and the abundance, distribution, and condition of corals within patch reefs of the Florida Reef Tract. In the Florida Keys, long-term monitoring has documented significant differences in water quality along a cross-shelf gradient. Inshore habitats exhibit higher levels of nutrients (DIN and TP), TOC, turbidity, and light attenuation, and these levels decrease with increasing distance from shore and connections to tidal bays. In clear contrast to these patterns of water quality, corals on inshore patch reefs exhibited significantly higher coral cover, higher growth rates, and lower partial mortality rates than those documented in similar offshore habitats. Coral recruitment rates did not differ between inshore and offshore habitats. Corals on patch reefs closest to shore had well-spread population structures numerically dominated by intermediate to large colonies, while offshore populations showed narrower size-distributions that become increasingly positively skewed. Differences in size-structure of coral populations were attributed to faster growth and lower rates of partial mortality at inshore habitats. While the underlying causes for the favorable condition of inshore coral communities are not yet known, we hypothesize that the ability of corals to shift their trophic mode under adverse environmental conditions may be partly responsible for the observed patterns, as shown in other reef systems. This study, based on data collected from a uniform reef habitat type and coral species with diverse life-history and stress-response patterns from a heavily exploited reef system, showed that proximity to potential sources of stressors may not always prove an adequate proxy for assigning potential risks to reef health, and that hypothesized patterns of coral cover, population size-structure, growth, and mortality are not always directly related to water quality gradients.

Multiple outer-reef tracts along the south Florida bank margin: Outlier reefs, a new windward-margin model

USGS Publications Warehouse

Lidz, Barbara H.; Hine, A.C.; Shinn, Eugene A.; Kindinger, Jack G.

1991-01-01

High-resolution seismic-reflection profiles off the lower Florida Keys reveal a multiple outlier-reef tract system ~0.5 to 1.5 km sea-ward of the bank margin. The system is characterized by a massive, outer main reef tract of high (28 m) unburied relief that parallels the margin and at least two narrower, discontinuous reef tracts of lower relief between the main tract and the shallow bank-margin reefs. The outer tract is ~0.5 to 1 km wide and extends a distance of ~57 km. A single pass divides the outer tract into two main reefs. The outlier reefs developed on antecedent, low-gradient to horizontal offbank surfaces, interpreted to be Pleistocene beaches that formed terracelike features. Radiocarbon dates of a coral core from the outer tract confirm a pre-Holocene age. These multiple outlier reefs represent a new windward-margin model that presents a significant, unique mechanism for progradation of carbonate platforms during periods of sea-level fluctuation. Infilling of the back-reef terrace basins would create new terraced promontories and would extend or "step" the platform seaward for hundreds of metres. Subsequent outlier-reef development would produce laterally accumulating sequences.

Observation of coral reefs on Ishigaki Island, Japan, using Landsat TM images and aerial photographs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matsunaga, Tsuneo; Kayanne, Hajime

1997-06-01

Ishigaki Island is located at the southwestern end of Japanese Islands and famous for its fringing coral reefs. More than twenty LANDSAT TM images in twelve years and aerial photographs taken on 1977 and 1994 were used to survey two shallow reefs on this island, Shiraho and Kabira. Intensive field surveys were also conducted in 1995. All satellite images of Shiraho were geometrically corrected and overlaid to construct a multi-date satellite data set. The effects of solar elevation and tide on satellite imagery were studied with this data set. The comparison of aerial and satellite images indicated that significant changesmore » occurred between 1977 and 1984 in Kabira: rapid formation in the western part and decrease in the eastern part of dark patches. The field surveys revealed that newly formed dark patches in the west contain young corals. These results suggest that remote sensing is useful for not only mapping but also monitoring of shallow coral reefs.« less

Reproductive ecology and early life history traits of the brooding coral, Porites astreoides, from shallow to mesophotic zones

NASA Astrophysics Data System (ADS)

Goodbody-Gringley, Gretchen; Wong, Kevin H.; Becker, Danielle M.; Glennon, Keegan; de Putron, Samantha J.

2018-06-01

Early life history traits of brooding corals are often affected by the environmental conditions experienced by parental colonies. Such parental effects can impact offspring survival, which influences the overall success of a population as well as resilience to environmental challenges. This study examines the reproductive ecology and early life history traits of the brooding coral Porites astreoides across a depth gradient in Bermuda. Fecundity, larval size, larval Symbiodinium density, and settlement success, as well as post-metamorphic juvenile survival, growth, and Symbiodinium density were compared across three reef sites representing an inshore patch reef (2-5 m), an offshore rim reef (8-10 m), and an upper-mesophotic reef (30-33 m). Although fecundity did not differ across sites, larvae produced by colonies on the patch reef site were smaller, had lower Symbiodinium densities, and had lower rates of settlement and juvenile survival compared to larvae from colonies on the rim and upper-mesophotic reef sites. Larvae produced by colonies from the rim and upper-mesophotic sites did not differ in size or Symbiodinium densities; however, rates of settlement, growth, and survival were higher for larvae from the upper-mesophotic site compared to those from the rim reef site. These results indicate that offspring quality and success vary among sites with differing environmental conditions and may imply higher recruitment potential and resilience for upper-mesophotic corals.

Inter-habitat variation in density and size composition of reef fishes from the Cuban Northwestern shelf.

PubMed

Aguilar, Consuelo; González-Sansón, Gaspar; Cabrera, Yureidy; Ruiz, Alexei; Curry, R Allen

2014-06-01

Movement and exchange of individuals among habitats is critical for the dynamics and success of reef fish populations. Size segregation among habitats could be taken as evidence for habitat connectivity, and this would be a first step to formulate hypotheses about ontogenetic inter-habitat migrations. The primary goal of our research was to find evidence of inter-habitat differences in size distributions and density of reef fish species that can be classified a priori as habitat-shifters in an extensive (-600km2) Caribbean shelf area in NW Cuba. We sampled the fish assemblage of selected species using visual census (stationary and transect methods) in 20 stations (sites) located in mangrove roots, patch reefs, inner zone of the crest and fore reef (12-16m depth). In each site, we performed ten censuses for every habitat type in June and September 2009. A total of 11 507 individuals of 34 species were counted in a total of 400 censuses. We found significant differences in densities and size compositions among reef and mangrove habitats, supporting the species-specific use of coastal habitats. Adults were found in all habitats. Reef habitats, mainly patch reefs, seem to be most important for juvenile fish of most species. Mangroves were especially important for two species of snappers (Lutjanus apodus and L. griseus), providing habitat for juveniles. These species also displayed well defined gradients in length composition across the shelf.

Coral reef grazer-benthos dynamics complicated by invasive algae in a small marine reserve

PubMed Central

Stamoulis, Kostantinos A.; Friedlander, Alan M.; Meyer, Carl G.; Fernandez-Silva, Iria; Toonen, Robert J.

2017-01-01

Blooms of alien invasive marine algae have become common, greatly altering the health and stability of nearshore marine ecosystems. Concurrently, herbivorous fishes have been severely overfished in many locations worldwide, contributing to increases in macroalgal cover. We used a multi-pronged, interdisciplinary approach to test if higher biomass of herbivorous fishes inside a no-take marine reserve makes this area more resistant to invasive algal overgrowth. Over a two year time period, we (1) compared fish biomass and algal cover between two fished and one unfished patch reef in Hawai’i, (2) used acoustic telemetry to determine fidelity of herbivorous fishes to the unfished reef, and (3) used metabarcoding and next-generation sequencing to determine diet composition of herbivorous fishes. Herbivore fish biomass was significantly higher in the marine reserve compared to adjacent fished reefs, whereas invasive algal cover differed by species. Herbivorous fish movements were largely confined to the unfished patch reef where they were captured. Diet analysis indicated that the consumption of invasive algae varied among fish species, with a high prevalence of comparatively rare native algal species. Together these findings demonstrate that the contribution of herbivores to coral reef resilience, via resistance to invasive algae invasion, is complex and species-specific. PMID:28276458

Burdigalian turbid water patch reef environment revealed by larger benthic foraminifera

NASA Astrophysics Data System (ADS)

Novak, V.; Renema, W.; Throughflow-project

2012-04-01

Ancient isolated patch reefs outcropping from siliciclastic sediments are a trademark for the Miocene carbonate deposits occurring in East Kalimantan, Indonesia. They develop in transitional shelf sediments deposited between deltaic and deep marine deposits (Allen and Chambers, 1998). The Batu Putih Limestone (Wilson, 2005) and similar outcrops in adjacent areas have been characterized as shallow water carbonates influenced by high siliciclastic input, showing low relief patch reefs in turbid waters. Larger benthic foraminifera (LBF) are excellent markers for biochronology and paleoenvironmental reconstruction. This study aims to reveal age and paleoenvironment of a shallow water carbonate patch reef developed in mixed depositional system by using LBF and microfacies analysis. The studied section is located near Bontang, East Kalimantan, and is approximately 80 m long and 12 m high. It is placed within Miocene sediments in the central part of the Kutai Basin. Patch reef and capping sediments were logged through eight transects along section and divided into nine different lithological units from which samples were collected. Thin sections and isolated specimens of larger benthic foraminifera were analyzed and recognized to species level (where possible) providing age and environmental information. Microfacies analysis of thin sections included carbonate classification (textural scheme of Dunham, 1962) and assemblage composition of LBF, algae and corals relative abundance. Three environmentally indicative groups of LBF were separated based on test morphology, habitat or living relatives (Hallock and Glenn, 1986). Analysed foraminifera assemblage suggests Burdigalian age (Tf1). With use of microfacies analysis nine successive lithological units were grouped into five facies types. Paleoenvironmental reconstruction of LBF fossil assemblage indicate two cycles of possible deepening recorded in the section. Based on high muddy matrix ratio in analyzed thin-sections we still cannot conclude whether they were deeper water assemblage, or that they occurred in shallower water and influenced by turbid conditions as the result of terrigenous input. According to preliminary analysis and siliciclastic content in the sediments the later one should be more likely. Further work will include additional fossil groups analysis (corals, algae and bryozoans), detailed petrographical analysis and Strontium isotope stratigraphy. Allen, G.P., and Chambers, J.L.C. (1998): Sedimentation in the Modern and Miocene Mahakam Delta. Indonesian Petroleum Association, Jakarta, Indonesia, 236 p. Dunham, R.J. (1962): Classification of carbonate rocks according to their depositional texture. In: Ham, W.E., ed., Classification of Carbonate Rocks: American Association of Petroleum Geologists Memoir, v. 1, p. 108-121. Hallock, P. and Glenn, C.E. (1986): Larger Foraminifera: A tool for paleoenvironmental analysis of Cenozoic carbonate depositional facies. Palaios 1, 55-64. Wilson, M.E.J. (2005): Development of equatorial delta-front patch reefs during the Neogene, Borneo. - Journal of Sedimentary Research, 75(1): 114-133.

Coral communities of the remote atoll reefs in the Nansha Islands, southern South China Sea.

PubMed

Zhao, M X; Yu, K F; Shi, Q; Chen, T R; Zhang, H L; Chen, T G

2013-09-01

During the months of May and June in the year 2007, a survey was conducted regarding coral reef communities in the remote atolls (Zhubi Reef and Meiji Reef) of Nansha Islands, southern South China Sea. The goals of the survey were to: (1) for the first time, compile a scleractinian coral check-list; (2) estimate the total richness, coral cover, and growth forms of the community; and (3) describe preliminary patterns of community structure according to geomorphological units. Findings of this survey revealed a total of 120 species of scleractinia belonging to 40 genera, while the average coral cover was 21 %, ranging from less than 10 % to higher than 50 %. Branching and massive corals were also found to be the most important growth forms of the whole coral community, while Acropora, Montipora, and Porites were the three dominant genera in the overall region, with their contributions to total coral cover measuring 21, 22, and 23 %, respectively. Overall, coral communities of the Nansha Islands were in a relative healthy condition with high species diversity and coral cover. Spatial pattern of coral communities existed among various geomorphological units. Mean coral cover was highest in the patch reef within the lagoon, followed by the fore reef slope, reef flat, and lagoon slope. The greatest contributors to total coral cover were branching Acropora (45 %) in the lagoon slope, branching Montipora (44 %) in the reef flat, and massive Porites (51 %) in the patch reef. Coral cover in the fore reef revealed a greater range of genera than in other habitats. The leeward fore reef slope had higher coral cover (> 50 %) when compared with the windward slope (< 10 %). The coral communities of the inner reef flat were characterized by higher coral cover (27 %) and dominant branching Montipora corals, while lower coral cover (4 %) was dominated by Psammocora with massive growth forms on the outer reef flat. Destructive fishing and coral bleaching were two major threats to coral communities in the study area.

Environmental controls on spatial patterns in the long-term persistence of giant kelp in central California

USGS Publications Warehouse

Young, Mary Alida; Cavanaugh, Kyle C.; Bell, Tom W.; Raimondi, Peter T.; Edwards, Christopher A.; Drake, Patrick T.; Erikson, Li H.; Storlazzi, Curt

2016-01-01

As marine management is moving towards the practice of protecting static areas, it is 44 important to make sure protected areas capture and protect persistent populations. Rocky reefs in 45 many temperate areas worldwide serve as habitat for canopy forming macroalgae and these 46 structure forming species of kelps (order Laminariales) often serve as important habitat for a great 47 diversity of species. Macrocystis pyrifera is the most common canopy forming kelp species found 48 along the coast of California but the distribution and abundance of M. pyrifera varies in space and 49 time. The purpose of this study is to determine what environmental parameters are correlated with 50 the spatial and temporal persistence of M. pyrifera along the central coast of California and how 51 well those environmental parameters can be used to predict areas where M. pyrifera is more likely 52 to persist. Nine environmental variables considered in this study included depth of the seafloor, 53 structure of the rocky reef, proportion of rocky reef, size of kelp patch, biomass of kelp within a 54 patch, distance from the edge of a kelp patch, sea surface temperature, wave orbital velocities, and 55 population connectivity of individual kelp patches. Using a generalized linear mixed effects model 56 (GLMM), the persistence of M. pyrifera was significantly associated with seven of the nine 57 variables considered: depth, complexity of the rocky reef, proportion of rock, patch biomass, 58 distance from the edge of a patch, population connectivity, and wave-orbital velocities. These 59 seven environmental variables were then used to predict the persistence of kelp across the central 60 coast and these predictions were compared to a reserved dataset of M. pyrifera persistence, which 61 was not used in the creation of the GLMM. The environmental variables were shown to accurately 62 predict the persistence of M. pyrifera within the central coast of California (r = 0.71, P<0.001). 63 Because persistence of giant kelp is important to the community structure of kelp forests, 64 understanding those factors that support persistent populations of M. pyrifera will enable more 65 effective management of these ecosystems.

Simulating reef response to sea-level rise at Lizard Island: A geospatial approach

NASA Astrophysics Data System (ADS)

Hamylton, S. M.; Leon, J. X.; Saunders, M. I.; Woodroffe, C. D.

2014-10-01

Sea-level rise will result in changes in water depth over coral reefs, which will influence reef platform growth as a result of carbonate production and accretion. This study simulates the pattern of reef response on the reefs around Lizard Island in the northern Great Barrier Reef. Two sea-level rise scenarios are considered to capture the range of likely projections: 0.5 m and 1.2 m above 1990 levels by 2100. Reef topography has been established through extensive bathymetric profiling, together with available data, including LiDAR, single beam bathymetry, multibeam swath bathymetry, LADS and digitised chart data. The reef benthic cover around Lizard Island has been classified using a high resolution WorldView-2 satellite image, which is calibrated and validated against a ground referencing dataset of 364 underwater video records of the reef benthic character. Accretion rates are parameterised using published hydrochemical measurements taken in-situ and rules are applied using Boolean logic to incorporate geomorphological transitions associated with different depth ranges, such as recolonisation of the reef flat when it becomes inundated as sea level rises. Simulations indicate a variable platform response to the different sea-level rise scenarios. For the 0.5 m rise, the shallower reef flats are gradually colonised by corals, enabling this active geomorphological zone to keep up with the lower rate of rise while the other sand dominated areas get progressively deeper. In the 1.2 m scenario, a similar pattern is evident for the first 30 years of rise, beyond which the whole reef platform begins to slowly drown. To provide insight on reef response to sea-level rise in other areas, simulation results of four different reef settings are discussed and compared at the southeast reef flat (barrier reef), Coconut Beach (fringing reef), Watson's Bay (leeward bay with coral patches) and Mangrove Beach (sheltered lagoonal embayment). The reef sites appear to accrete upwards at a rate commensurate with the rate of rise, thereby maintaining their original profile and position relative to the sea surface and the leeward and lagoonal sites with a low accretion rate maintain a similar profile but slowly gain depth relative to sea-level. The result of this variable response is that elevated features of the reef platform, such as reef patches and crests tend to become more pronounced.

Predation and landscape characteristics independently affect reef fish community organization.

PubMed

Stier, Adrian C; Hanson, Katharine M; Holbrook, Sally J; Schmitt, Russell J; Brooks, Andrew J

2014-05-01

Trophic island biogeography theory predicts that the effects of predators on prey diversity are context dependent in heterogeneous landscapes. Specifically, models predict that the positive effect of habitat area on prey diversity should decline in the presence of predators, and that predators should modify the partitioning of alpha and beta diversity across patchy landscapes. However, experimental tests of the predicted context dependency in top-down control remain limited. Using a factorial field experiment we quantify the effects of a focal predatory fish species (grouper) and habitat characteristics (patch size, fragmentation) on the partitioning of diversity and assembly of coral reef fish communities. We found independent effects of groupers and patch characteristics on prey communities. Groupers reduced prey abundance by 50% and gamma diversity by 45%, with a disproportionate removal of rare species relative to common species (64% and 36% reduction, respectively; an oddity effect). Further, there was a 77% reduction in beta diversity. Null model analysis demonstrated that groupers increased the importance of stochastic community assembly relative to patches without groupers. With regard to patch size, larger patches contained more fishes, but a doubling of patch size led to a modest (36%) increase in prey abundance. Patch size had no effect on prey diversity; however, fragmented patches had 50% higher species richness and modified species composition relative to unfragmented patches. Our findings suggest two different pathways (i.e., habitat or predator shifts) by which natural and/or anthropogenic processes can drive variation in fish biodiversity and community assembly.

Selective predation for low body condition at the larval-juvenile transition of a coral reef fish.

PubMed

Hoey, Andrew S; McCormick, Mark I

2004-03-01

Mortality is known to be high during the transition from larval to juvenile life stages in organisms that have complex life histories. We are only just beginning to understand the processes that influence which individuals survive this period of high mortality, and which traits may be beneficial. Here we document a field experiment that examines the selectivity of predation immediately following settlement to the juvenile population in a common tropical fish, Pomacentrus amboinensis (Pomacentridae). Newly metamorphosed fish were tagged and randomly placed onto replicated patches of natural habitat cleared of resident fishes. After exposure to transient predators for 3 days, fish were recollected and the attributes of survivors from patch reefs that sustained high mortality were compared to individuals from patch reefs that experienced low mortality. Seven characteristics of individuals, which were indicative of previous and present body condition, were compared between groups. Predation was found to be selective for fish that grew slowly in the latter third of their larval phase, were low in total lipids, and had a high standardized weight (Fulton's K). Traits developed in the larval phase can strongly influence the survival of individuals over this critical transition period for organisms with complex life cycles.

Ecosystem Services of Coastal Habitats and Fisheries: Multi-Scale Ecological and Economic Modeling

EPA Science Inventory

Critical habitats for fish and wildlife often are small patches in landscapes, e.g., aquatic vegetation beds, reefs, isolated ponds and wetlands, remnant old growth forests, etc, yet the same animal populations that depend on these patches for reproduction or survival can be exte...

Population structure of the hydrocoral Millepora platyphylla in habitats experiencing different flow regimes in Moorea, French Polynesia

PubMed Central

Mercière, Alexandre; Vermeij, Mark J. A.; Planes, Serge

2017-01-01

While the fire coral Millepora platyphylla is an important component of Indo-Pacific reefs, where it thrives in a wide range of environments, the ecological and biological processes driving its distribution and population structure are not well understood. Here, we quantified this species’ population structure in five habitats with contrasting hydrodynamic regimes in Moorea, French Polynesia; two in the fore reef: mid and upper slopes, and three in the lagoon: back, fringing and patch reefs. A total of 3651 colonies of fire corals were mapped and measured over 45,000 m2 of surveyed reef. Due to the species’ sensitivity to fragmentation in response to strong water movement, hydrodynamic conditions (e.g. waves, pass and lagoonal circulation) corresponded to marked differences in colony size distributions, morphology and recruitment dynamics among habitats. The size structure varied among reef habitats with higher proportions of larger colonies in calm nearshore reefs (fringing and patch reefs), while populations were dominated by smaller colonies in the exposed fore reefs. The highest densities of fire corals were recorded in fore reef habitats (0.12–0.20 n.m-2) where the proportion of recruits and juveniles was higher at mid slope populations (49.3%) than on the upper slope near where waves break (29.0%). In the latter habitat, most colonies grew as vertical sheets on encrusting bases making them more vulnerable to colony fragmentation, whereas fire corals were encrusting or massive in all other habitats. The lowest densities of M. platyphylla occurred in lagoonal habitats (0.02–0.04 n.m-2) characterized by a combination of low water movement and other physical and biological stressors. This study reports the first evidence of population structure of fire corals in two common reef environments and illustrates the importance of water flow in driving population dynamic processes of these reef-building species. PMID:28273119

Keeping up with sea-level rise: Carbonate production rates in Palau and Yap, western Pacific Ocean.

PubMed

van Woesik, Robert; Cacciapaglia, Christopher William

2018-01-01

Coral reefs protect islands from tropical storm waves and provide goods and services for millions of islanders worldwide. Yet it is unknown how coral reefs in general, and carbonate production in particular, will respond to sea-level rise and thermal stress associated with climate change. This study compared the reef-building capacity of different shallow-water habitats at twenty-four sites on each of two islands, Palau and Yap, in the western Pacific Ocean. We were particularly interested in estimating the inverse problem of calculating the value of live coral cover at which net carbonate production becomes negative, and whether that value varied across habitats. Net carbonate production varied among habitats, averaging 10.2 kg CaCO3 m-2 y-1 for outer reefs, 12.7 kg CaCO3 m-2 y-1 for patch reefs, and 7.2 kg CaCO3 m-2 y-1 for inner reefs. The value of live coral cover at which net carbonate production became negative varied across habitats, with highest values on inner reefs. These results suggest that some inner reefs tend to produce less carbonate, and therefore need higher coral cover to produce enough carbonate to keep up with sea-level rise than outer and patch reefs. These results also suggest that inner reefs are more vulnerable to sea-level rise than other habitats, which stresses the need for effective land-use practices as the climate continues to change. Averaging across all reef habitats, the rate of carbonate production was 9.7 kg CaCO3 m-2 y-1, or approximately 7.9 mm y-1 of potential vertical accretion. Such rates of vertical accretion are higher than projected averages of sea-level rise for the representative concentration pathway (RCP) climate-change scenarios 2.6, 4.5, and 6, but lower than for the RCP scenario 8.5.

Population structure of the hydrocoral Millepora platyphylla in habitats experiencing different flow regimes in Moorea, French Polynesia.

PubMed

Dubé, Caroline E; Mercière, Alexandre; Vermeij, Mark J A; Planes, Serge

2017-01-01

While the fire coral Millepora platyphylla is an important component of Indo-Pacific reefs, where it thrives in a wide range of environments, the ecological and biological processes driving its distribution and population structure are not well understood. Here, we quantified this species' population structure in five habitats with contrasting hydrodynamic regimes in Moorea, French Polynesia; two in the fore reef: mid and upper slopes, and three in the lagoon: back, fringing and patch reefs. A total of 3651 colonies of fire corals were mapped and measured over 45,000 m2 of surveyed reef. Due to the species' sensitivity to fragmentation in response to strong water movement, hydrodynamic conditions (e.g. waves, pass and lagoonal circulation) corresponded to marked differences in colony size distributions, morphology and recruitment dynamics among habitats. The size structure varied among reef habitats with higher proportions of larger colonies in calm nearshore reefs (fringing and patch reefs), while populations were dominated by smaller colonies in the exposed fore reefs. The highest densities of fire corals were recorded in fore reef habitats (0.12-0.20 n.m-2) where the proportion of recruits and juveniles was higher at mid slope populations (49.3%) than on the upper slope near where waves break (29.0%). In the latter habitat, most colonies grew as vertical sheets on encrusting bases making them more vulnerable to colony fragmentation, whereas fire corals were encrusting or massive in all other habitats. The lowest densities of M. platyphylla occurred in lagoonal habitats (0.02-0.04 n.m-2) characterized by a combination of low water movement and other physical and biological stressors. This study reports the first evidence of population structure of fire corals in two common reef environments and illustrates the importance of water flow in driving population dynamic processes of these reef-building species.

Mesophotic bioerosion: Variability and structural impact on U.S. Virgin Island deep reefs

NASA Astrophysics Data System (ADS)

Weinstein, David K.; Smith, Tyler B.; Klaus, James S.

2014-10-01

Mesophotic reef corals, found 30-150 m below sea level, build complex structures that provide habitats for diverse ecosystems. Whereas bioerosion is known to impact the development and persistence of shallow reef structures, little is known regarding the extent of mesophotic bioerosion or how it might affect deeper reef geomorphology and carbonate accretion. Originally pristine experimental coral substrates and collected coral rubble were both used to investigate the variation and significance of mesophotic coral reef bioerosion south of St. Thomas, U.S. Virgin Islands. Bioerosion rates were calculated from experimental coral substrates exposed as framework for 1 and 2 years at four structurally distinct mesophotic coral reef habitats (between 30 and 45 m) as well as at a mid-shelf patch reef (21 m) and a shallow fringing patch reef (9 m). The long-term effects of macroboring were assessed by examining coral rubble collected at all sites. Overall, differences in bioerosional processes were found between shallow and mesophotic reefs. Increases in bioerosion on experimental substrates (amount of weight lost) were related to both decreasing seawater depth and increasing biomass of bioeroding parrotfish. Significant differences in coral skeleton bioerosion rates were also found between the transitional mesophotic reef zone (30-35 m) and the upper mesophotic reef zone (35-50 m) after 2 years of exposure, ranging from - 19.6 to 3.7 g/year. Total coral rubble macroboring was greater at most deep sites compared to shallower sites. Bioerosional grazing was found to dominate initial substrate modification in reefs 30.7 m and shallower, but sponges are believed to act as the main time-averaged long-term substrate bioeroders in reefs between 35 and 50 m. Although initial substrate bioerosion rates of a uniform substrate were relatively homogeneous in the 35-50 m depth zone, comparison of site composition suggests that mesophotic bioerosion will vary depending on the amount, location, and type of available substrate, and the duration both coral rubble and in situ coral framework are exposed on the seafloor. These variations may exaggerate pronounced structural differences in mesophotic reef habitats that experience few other methods of erosion.

Faunal turnover in Neogene to Recent Caribbean reef corals and region environmental change

DOE Office of Scientific and Technical Information (OSTI.GOV)

Budd, A.F.; Johnson, K.G.; Stemann, T.A.

1993-03-01

Quantitative analyses of species richness and species extinction and origination rates in the Neogene to Recent Caribbean reef coral fauna show that a major episode of turnover occurred during middle to late Pliocene time (4--1 Ma). The data for the authors analyses consist of a new compilation of occurrences of 175 species and 49 genera in reef sequences in the Dominican Republic and Costa Rica and in 21 scattered sites ranging in age from 22 Ma to present. The results show that: (1) during turnover, more than 75% of all species living between 6--4 Ma (n = 82) became extinct;more » (2) during turnover, extinction and origination rates were equally and simultaneously high, and a relatively constant number of species was maintained in the fauna; (3) the taxonomic composition of Caribbean reefs remained relatively constant before (10--4 Ma) and after (1--0 Ma) turnover. Turnover therefore preceded the high frequency sea level oscillations of late Pleistocene time, and appears related to long-term, unidirectional changes in climate and/or ocean circulation across the Caribbean region in association with closure of the Isthmus of Panama. The observed correspondence between high origination and extinction rates indicates that the same environmental factors may have been associated with increases in both rates, and that local habitat differentiation and fragmentation may have been involved. Stability persisted in the region despite the severe environmental stresses associated with Pleistocene climate change.« less

Habitat surrounding patch reefs influences the diet and nutrition of the western rock lobster

EPA Science Inventory

In this study the influence of habitat on the diet and nutrition of a common reef-associated generalist consumer, the western rock lobster Panulirus cygnus, was tested. Stable isotopes (13C/12C and 15N/14N) and gut contents were used to assess the diet of lobsters collected from ...

Benthic communities at two remote Pacific coral reefs: effects of reef habitat, depth, and wave energy gradients on spatial patterns.

PubMed

Williams, Gareth J; Smith, Jennifer E; Conklin, Eric J; Gove, Jamison M; Sala, Enric; Sandin, Stuart A

2013-01-01

Kingman Reef and Palmyra Atoll in the central Pacific are among the most remote coral reefs on the planet. Here we describe spatial patterns in their benthic communities across reef habitats and depths, and consider these in the context of oceanographic gradients. Benthic communities at both locations were dominated by calcifying organisms (54-86% cover), namely hard corals (20-74%) and crustose coralline algae (CCA) (10-36%). While turf algae were relatively common at both locations (8-22%), larger fleshy macroalgae were virtually absent at Kingman (<1%) and rare at Palmyra (0.7-9.3%). Hard coral cover was higher, but with low diversity, in more sheltered habitats such as Palmyra's backreef and Kingman's patch reefs. Almost exclusive dominance by slow-growing Porites on Kingman's patch reefs provides indirect evidence of competitive exclusion, probably late in a successional sequence. In contrast, the more exposed forereef habitats at both Kingman and Palmyra had higher coral diversity and were characterized by fast-growing corals (e.g., Acropora and Pocillopora), indicative of more dynamic environments. In general at both locations, soft coral cover increased with depth, likely reflecting increasingly efficient heterotrophic abilities. CCA and fleshy macroalgae cover decreased with depth, likely due to reduced light. Cover of other calcified macroalgae, predominantly Halimeda, increased with depth. This likely reflects the ability of many calcifying macroalgae to efficiently harvest light at deeper depths, in combination with an increased nutrient supply from upwelling promoting growth. At Palmyra, patterns of hard coral cover with depth were inconsistent, but cover peaked at mid-depths at Kingman. On Kingman's forereef, benthic community composition was strongly related to wave energy, with hard coral cover decreasing and becoming more spatially clustered with increased wave energy, likely as a result of physical damage leading to patches of coral in localized shelter. In contrast, the cover of turf algae at Kingman was positively related to wave energy, reflecting their ability to rapidly colonize newly available space. No significant patterns with wave energy were observed on Palmyra's forereef, suggesting that a more detailed model is required to study biophysical coupling there. Kingman, Palmyra, and other remote oceanic reefs provide interesting case studies to explore biophysical influences on benthic ecology and dynamics.

Benthic communities at two remote Pacific coral reefs: effects of reef habitat, depth, and wave energy gradients on spatial patterns

PubMed Central

Conklin, Eric J.; Gove, Jamison M.; Sala, Enric; Sandin, Stuart A.

2013-01-01

Kingman Reef and Palmyra Atoll in the central Pacific are among the most remote coral reefs on the planet. Here we describe spatial patterns in their benthic communities across reef habitats and depths, and consider these in the context of oceanographic gradients. Benthic communities at both locations were dominated by calcifying organisms (54–86% cover), namely hard corals (20–74%) and crustose coralline algae (CCA) (10–36%). While turf algae were relatively common at both locations (8–22%), larger fleshy macroalgae were virtually absent at Kingman (<1%) and rare at Palmyra (0.7–9.3%). Hard coral cover was higher, but with low diversity, in more sheltered habitats such as Palmyra’s backreef and Kingman’s patch reefs. Almost exclusive dominance by slow-growing Porites on Kingman’s patch reefs provides indirect evidence of competitive exclusion, probably late in a successional sequence. In contrast, the more exposed forereef habitats at both Kingman and Palmyra had higher coral diversity and were characterized by fast-growing corals (e.g., Acropora and Pocillopora), indicative of more dynamic environments. In general at both locations, soft coral cover increased with depth, likely reflecting increasingly efficient heterotrophic abilities. CCA and fleshy macroalgae cover decreased with depth, likely due to reduced light. Cover of other calcified macroalgae, predominantly Halimeda, increased with depth. This likely reflects the ability of many calcifying macroalgae to efficiently harvest light at deeper depths, in combination with an increased nutrient supply from upwelling promoting growth. At Palmyra, patterns of hard coral cover with depth were inconsistent, but cover peaked at mid-depths at Kingman. On Kingman’s forereef, benthic community composition was strongly related to wave energy, with hard coral cover decreasing and becoming more spatially clustered with increased wave energy, likely as a result of physical damage leading to patches of coral in localized shelter. In contrast, the cover of turf algae at Kingman was positively related to wave energy, reflecting their ability to rapidly colonize newly available space. No significant patterns with wave energy were observed on Palmyra’s forereef, suggesting that a more detailed model is required to study biophysical coupling there. Kingman, Palmyra, and other remote oceanic reefs provide interesting case studies to explore biophysical influences on benthic ecology and dynamics. PMID:23734341

Central-place foraging and ecological effects of an invasive predator across multiple habitats.

PubMed

Benkwitt, Cassandra E

2016-10-01

Cross-habitat foraging movements of predators can have widespread implications for predator and prey populations, community structure, nutrient transfer, and ecosystem function. Although central-place foraging models and other aspects of optimal foraging theory focus on individual predator behavior, they also provide useful frameworks for understanding the effects of predators on prey populations across multiple habitats. However, few studies have examined both the foraging behavior and ecological effects of nonnative predators across multiple habitats, and none has tested whether nonnative predators deplete prey in a manner predicted by these foraging models. I conducted behavioral observations of invasive lionfish (Pterois volitans) to determine whether they exhibit foraging movements similar to other central-place consumers. Then, I used a manipulative field experiment to test whether their effects on prey populations are consistent with three qualitative predictions from optimal foraging models. Specifically, I predicted that the effects of invasive lionfish on native prey will (1) occur at central sites first and then in surrounding habitats, (2) decrease with increasing distance away from their shelter site, and (3) extend to greater distances when prey patches are spaced closer together. Approximately 40% of lionfish exhibited short-term crepuscular foraging movements into surrounding habitats from the coral patch reefs where they shelter during daylight hours. Over the course of 7 weeks, lionfish depleted native fish populations on the coral patch reefs where they reside, and subsequently on small structures in the surrounding habitat. However, their effects did not decrease with increasing distance from the central shelter site and the influence of patch spacing was opposite the prediction. Instead, lionfish always had the greatest effects in areas with the highest prey densities. The differences between the predicted and observed effects of lionfish foraging are likely due to different constraints faced by invasive predators compared to native predators, namely that lionfish do not face increased predation risk with increased movement away from shelter sites. By foraging at greater distances from patch reefs than native predators, lionfish eliminated a spatial refuge from predation used by juveniles of many commercially and ecologically important reef fishes. © 2016 by the Ecological Society of America.

Resilience of predators to fishing pressure on coral patch reefs

USGS Publications Warehouse

Schroeder, R.E.; Parrish, J.D.

2005-01-01

Numbers and biomass of piscivorous fish and their predation on other fish may often be high in undisturbed coral reef communities. The effects of such predation have sometimes been studied by removal of piscivores (either experimentally or by fishermen). Such perturbations have usually involved removal of large, highly vulnerable, mobile piscivores that are often actively sought in fisheries. The effects of fishing on smaller, demersal, semi-resident piscivores have been little studied. We studied such effects on the fish communities of patch reefs at Midway atoll by experimentally removing major resident, demersal, piscivorous fishes. First, four control reefs and four experimental reefs were selected, their dimensions and habitats mapped, and their visible fish communities censused repeatedly over 1 year. Census of all control and experimental reefs was continued for the following 39 months, during which known piscivores were collected repeatedly by hand spearing. Records were kept of catch and effort to calculate CPUE as an index of predator density. Spearfishing on the experimental reefs removed 2504 piscivorous fish from 12 families and 43 taxa (mostly species). The species richness of the catch did not show an overall change over the duration of the experiment. Spearman rank correlation analysis showed some unexpected positive correlations for density in numbers and biomass of major fished piscivorous groups (especially lizardfish) over the experiment. Only two relatively minor fished piscivorous taxa declined in abundance over the experiment, while the overall abundance of piscivores increased. Visual censuses of fish on the experimental reefs also failed to show reduction of total piscivores over the full experimental period. No significant trend in the abundance of lizardfish censused over the full period was apparent on any of the control reefs. The high resilience of piscivores on these experimental reefs to relatively intense fishing pressure could result from their protracted recruitment seasons, high immigration rates, cryptic habits, or naturally high abundances. A major factor was the high immigration rates of lizardfish, replacing lizardfish and other less mobile piscivores removed from the reefs by spearing. On the fished reefs, the removed lizardfish population replaced itself >20 times during the experiment; other piscivorous taxa replaced themselves only 5 times.

Benthic meiofaunal community response to the cascading effects of herbivory within an algal halo system of the Great Barrier Reef

PubMed Central

Hammill, Edward; Booth, David J.; Madin, Elizabeth M. P.; Hinchliffe, Charles; Harborne, Alastair R.; Lovelock, Catherine E.; Macreadie, Peter I.; Atwood, Trisha B.

2018-01-01

Benthic fauna play a crucial role in organic matter decomposition and nutrient cycling at the sediment-water boundary in aquatic ecosystems. In terrestrial systems, grazing herbivores have been shown to influence below-ground communities through alterations to plant distribution and composition, however whether similar cascading effects occur in aquatic systems is unknown. Here, we assess the relationship between benthic invertebrates and above-ground fish grazing across the ‘grazing halos’ of Heron Island lagoon, Australia. Grazing halos, which occur around patch reefs globally, are caused by removal of seagrass or benthic macroalgae by herbivorous fish that results in distinct bands of unvegetated sediments surrounding patch reefs. We found that benthic algal canopy height significantly increased with distance from patch reef, and that algal canopy height was positively correlated with the abundances of only one invertebrate taxon (Nematoda). Both sediment carbon to nitrogen ratios (C:N) and mean sediment particle size (μm) demonstrated a positive correlation with Nematoda and Arthropoda (predominantly copepod) abundances, respectively. These positive correlations indicate that environmental conditions are a major contributor to benthic invertebrate community distribution, acting on benthic communities in conjunction with the cascading effects of above-ground algal grazing. These results suggest that benthic communities, and the ecosystem functions they perform in this system, may be less responsive to changes in above-ground herbivorous processes than those previously studied in terrestrial systems. Understanding how above-ground organisms, and processes, affect their benthic invertebrate counterparts can shed light on how changes in aquatic communities may affect ecosystem function in previously unknown ways. PMID:29513746

Benthic meiofaunal community response to the cascading effects of herbivory within an algal halo system of the Great Barrier Reef.

PubMed

Ollivier, Quinn R; Hammill, Edward; Booth, David J; Madin, Elizabeth M P; Hinchliffe, Charles; Harborne, Alastair R; Lovelock, Catherine E; Macreadie, Peter I; Atwood, Trisha B

2018-01-01

Benthic fauna play a crucial role in organic matter decomposition and nutrient cycling at the sediment-water boundary in aquatic ecosystems. In terrestrial systems, grazing herbivores have been shown to influence below-ground communities through alterations to plant distribution and composition, however whether similar cascading effects occur in aquatic systems is unknown. Here, we assess the relationship between benthic invertebrates and above-ground fish grazing across the 'grazing halos' of Heron Island lagoon, Australia. Grazing halos, which occur around patch reefs globally, are caused by removal of seagrass or benthic macroalgae by herbivorous fish that results in distinct bands of unvegetated sediments surrounding patch reefs. We found that benthic algal canopy height significantly increased with distance from patch reef, and that algal canopy height was positively correlated with the abundances of only one invertebrate taxon (Nematoda). Both sediment carbon to nitrogen ratios (C:N) and mean sediment particle size (μm) demonstrated a positive correlation with Nematoda and Arthropoda (predominantly copepod) abundances, respectively. These positive correlations indicate that environmental conditions are a major contributor to benthic invertebrate community distribution, acting on benthic communities in conjunction with the cascading effects of above-ground algal grazing. These results suggest that benthic communities, and the ecosystem functions they perform in this system, may be less responsive to changes in above-ground herbivorous processes than those previously studied in terrestrial systems. Understanding how above-ground organisms, and processes, affect their benthic invertebrate counterparts can shed light on how changes in aquatic communities may affect ecosystem function in previously unknown ways.

Interactive effects of live coral and structural complexity on the recruitment of reef fishes

NASA Astrophysics Data System (ADS)

Coker, D. J.; Graham, N. A. J.; Pratchett, M. S.

2012-12-01

Corals reefs are subjected to multiple disturbances that modify levels of coral cover and structural complexity of the reef matrix, and in turn influence the structure of associated fish communities. With disturbances predicted to increase, insight into how changes in substrate condition will influence the recruitment of many fishes is essential for understanding the recovery of reef fish populations following biological and physical disturbances. While studies have revealed that both live coral cover and structural complexity are important for many fishes, there is a lack of understanding regarding how a combination of these changes will impact the recruitment of fishes. This study used experimentally constructed patch reefs consisting of six different habitat treatments; three levels of live coral cover (high, medium, low) crossed with two levels of structural complexity (high, low), to test the independent and combined effects of live coral cover and structural complexity on the recruitment and recovery of fish communities. The abundance and species diversity of fishes varied significantly among the six habitat treatments, but differences were not clearly associated with either coral cover or structural complexity and varied through time. More striking, however, was a significant difference in the composition of fish assemblages among treatments, due mostly to disproportionate abundance of coral-dwelling fishes on high coral cover, high complexity reefs. Overall, it appears that coral cover had a more important influence than structural complexity, at least for the contrasting levels of structural complexity achieved on experimental patch reefs. Furthermore, we found that live coral cover is important for the recruitment of some non-coral-dependent fishes. This study confirms that live coral cover is critical for the maintenance of high biodiversity on tropical coral reefs, and that sustained and ongoing declines in coral cover will adversely affect recruitment for many different species of reef fishes.

Satellite remote sensing reveals a positive impact of living oyster reefs on microalgal biofilm development

NASA Astrophysics Data System (ADS)

Echappé, Caroline; Gernez, Pierre; Méléder, Vona; Jesus, Bruno; Cognie, Bruno; Decottignies, Priscilla; Sabbe, Koen; Barillé, Laurent

2018-02-01

Satellite remote sensing (RS) is routinely used for the large-scale monitoring of microphytobenthos (MPB) biomass in intertidal mudflats and has greatly improved our knowledge of MPB spatio-temporal variability and its potential drivers. Processes operating on smaller scales however, such as the impact of benthic macrofauna on MPB development, to date remain underinvestigated. In this study, we analysed the influence of wild Crassostrea gigas oyster reefs on MPB biofilm development using multispectral RS. A 30-year time series (1985-2015) combining high-resolution (30 m) Landsat and SPOT data was built in order to explore the relationship between C. gigas reefs and MPB spatial distribution and seasonal dynamics, using the normalized difference vegetation index (NDVI). Emphasis was placed on the analysis of a before-after control-impact (BACI) experiment designed to assess the effect of oyster killing on the surrounding MPB biofilms. Our RS data reveal that the presence of oyster reefs positively affects MPB biofilm development. Analysis of the historical time series first showed the presence of persistent, highly concentrated MPB patches around oyster reefs. This observation was supported by the BACI experiment which showed that killing the oysters (while leaving the physical reef structure, i.e. oyster shells, intact) negatively affected both MPB biofilm biomass and spatial stability around the reef. As such, our results are consistent with the hypothesis of nutrient input as an explanation for the MPB growth-promoting effect of oysters, whereby organic and inorganic matter released through oyster excretion and biodeposition stimulates MPB biomass accumulation. MPB also showed marked seasonal variations in biomass and patch shape, size and degree of aggregation around the oyster reefs. Seasonal variations in biomass, with higher NDVI during spring and autumn, were consistent with those observed on broader scales in other European mudflats. Our study provides the first multi-sensor RS satellite evidence of the promoting and structuring effect of oyster reefs on MPB biofilms.

Status and conservation of coral reefs in Costa Rica.

PubMed

Cortés, Jorge; Jiménez, Carlos E; Fonseca, Ana C; Alvarado, Juan José

2010-05-01

Costa Rica has coral communities and reefs on the Caribbean coast and on the Pacific along the coast and off-shore islands. The Southern section of the Caribbean coast has fringing and patch reefs, carbonate banks, and an incipient algal ridge. The Pacific coast has coral communities, reefs and isolated coral colonies. Coral reefs have been seriously impacted in the last 30 years, mainly by sediments (Caribbean coast and some Pacific reefs) and by El Niño warming events (both coasts). Monitoring is being carried out at three sites on each coast. Both coasts suffered significant reductions in live coral cover in the 1980's, but coral cover is now increasing in most sites. The government of Costa Rica is aware of the importance of coral reefs and marine environments in general, and in recent years decrees have been implemented (or are in the process of approval) to protect them, but limited resources endanger their proper management and conservation, including proper outreach to reef users and the general public.

Coral-reef front migration in the Ryukyu Arc: responses of high latitude coral reefs to Quaternary climatic changes in North Western Pacific

NASA Astrophysics Data System (ADS)

Matsuda, H.; Iryu, Y.; Machiyama, H.

2003-04-01

Coral reefs are tropic to subtropic coastal ecosystems comprising very diverse organisms. Their community structure and geographic and local distribution are highly controlled by various environmental factors. Thus, their ancient counterparts, reef deposits, provide important, high-resolution records of geoscientific events in tropic to subtropic shallow waters, such as vertical and lateral tectonic movements, sea-level fluctuations, paleoclimatic changes, and paleoceanographic variations. In order to clarify relationships between reef formation and geoscientific events, it is necessary to investigate the reef deposits at relatively higher latitudes within reef provinces, because such reefs were considered to be more sensitive to the environmental changes than those in proximal areas. It can be, therefore, considered that the northern or southern limit of reef formation, herein termed the 'coral-reef front', may have migrated to higher and lower latitudes, respectively, responding to Pleistocene global warming and cooling associated with rapid, cyclic changes in climate and oceanographic conditions and with glacioeustatic sea-level rises and falls. Thus, this study mainly aims (1) to depict paleoeclimatic and paleoceanographic fluctuations in tropic to subtropic shallow-waters in details by reconstructing the coral-reef front migration, (2) how and to what extent the reefs responded to rapid environmental changes, and (3) to evaluate a role of coral reefs in a global carbon cycle. To resolve the problems described above, the Ryukyu Islands are one of the best fields. In this proposal, we will insist that the multiple drilling that covers submarine (IODP) and land (ICDP) areas is the only way to complete our purposes.

Metamorphosing reef fishes avoid predator scent when choosing a home.

PubMed

Vail, Alexander L; McCormick, Mark I

2011-12-23

Most organisms possess anti-predator adaptations to reduce their risk of being consumed, but little is known of the adaptations prey employ during vulnerable life-history transitions when predation pressures can be extreme. We demonstrate the use of a transition-specific anti-predator adaptation by coral reef fishes as they metamorphose from pelagic larvae to benthic juveniles, when over half are consumed within 48 h. Our field experiment shows that naturally settling damselfish use olfactory, and most likely innate, predator recognition to avoid settling to habitat patches manipulated to emit predator odour. Settlement to patches emitting predator odour was on average 24-43% less than to control patches. Evidence strongly suggests that this avoidance of sedentary and patchily distributed predators by nocturnal settlers will gain them a survival advantage, but also lead to non-lethal predator effects: the costs of exhibiting anti-predator adaptations. Transition-specific anti-predator adaptations, such as demonstrated here, may be widespread among organisms with complex life cycles and play an important role in prey population dynamics.

Is Echinometra viridis facilitating a phase shift on an Acropora cervicornis patch reef in Belize?

NASA Astrophysics Data System (ADS)

Stefanic, C. M.; Greer, L.; Norvell, D.; Benson, W.; Curran, H.

2012-12-01

Coral reef health is in rapid decline across the Caribbean due to a number of anthropogenic and natural disturbances. A phase shift from coral- to macroalgae-dominant reefs is pervasive and has been well documented. Acropora cervicornis (Staghorn Coral) has been particularly affected by this shift due to mass mortality of this species since the 1980s. In recent years few Caribbean A. cervicornis refugia have been documented. This study characterizes the relationship between coral and grazing urchins on a rare patch reef system dominated by A. cervicornis off the coast of Belize. To assess relative abundance of live A. cervicornis and the urchin Echinometra viridis, photographs and urchin abundance data were collected from 132 meter square quadrats along five transects across the reef. Photographs were digitized and manually segmented using Adobe Illustrator, and percent live coral cover and branch tip densities were calculated using Matlab. Mean percent live coral cover across all transects was 24.4 % with a high of 65% live coral per meter square. Average urchin density was 18.5 per quadrat, with an average density per transect ranging from 22.1 to 0.5 per quadrat. Up to over 400 live A. cervicornis branch tips per quadrat were observed. Data show a positive correlation between E. viridis abundance and live A. cervicornis, suggesting that these urchins are facilitating recovery or persistence of this endangered coral species. These results suggest the relationship between E. viridis and A. cervicornis could be a key element in a future reversal of the coral to macroalgae phase shift on some Caribbean coral reefs.

Return of the coral reef hypothesis: basin to shelf partitioning of CaCO3 and its effect on atmospheric CO2.

PubMed

Opdyke, B N; Walker, J C

1992-08-01

Differences in the rate of coral reef carbonate deposition from the Pleistocene to the Holocene may account for the Quaternary variation of atmospheric CO2. Volumes of carbonate associated with Holocene reefs require an average deposition rate of 2.0 x 10(13) mol/yr for the past 5 ka. In light of combined riverine, midocean ridge, and ground-water fluxes of calcium to the oceans of 2.3 x 10(13) mol/yr, the current flux of calcium carbonate to pelagic sediments must be far below the Pleistocene average of 1.2 x 10(13) mol/yr. We suggest that sea-level change shifts the locus of carbonate deposition from the deep sea to the shelves as the normal glacial-interglacial pattern of deposition for Quaternary global carbonates. To assess the impact of these changes on atmospheric CO2, a simple numerical simulation of the global carbon cycle was developed. Atmospheric CO2 as well as calcite saturation depth and sediment responses to these carbonate deposition changes are examined. Atmospheric CO2 changes close to those observed in the Vostok ice core, approximately 80 ppm CO2, for the Quaternary are observed as well as the approximate depth changes in percent carbonate of sediments measured in the Pacific Ocean over the same time interval.

Climate-driven coral reorganisation influences aggressive behaviour in juvenile coral-reef fishes

NASA Astrophysics Data System (ADS)

Kok, Judith E.; Graham, Nicholas A. J.; Hoogenboom, Mia O.

2016-06-01

Globally, habitat degradation is altering the abundance and diversity of species in a variety of ecosystems. This study aimed to determine how habitat degradation, in terms of changing coral composition under climate change, affected abundance, species richness and aggressive behaviour of juveniles of three damselfishes ( Pomacentrus moluccensis, P. amboinensis and Dischistodus perspicillatus, in order of decreasing reliance on coral). Patch reefs were constructed to simulate two types of reefs: present-day reefs that are vulnerable to climate-induced coral bleaching, and reefs with more bleaching-robust coral taxa, thereby simulating the likely future of coral reefs under a warming climate. Fish communities were allowed to establish naturally on the reefs during the summer recruitment period. Climate-robust reefs had lower total species richness of coral-reef fishes than climate-vulnerable reefs, but total fish abundance was not significantly different between reef types (pooled across all species and life-history stages). The nature of aggressive interactions, measured as the number of aggressive chases, varied according to coral composition; on climate-robust reefs, juveniles used the substratum less often to avoid aggression from competitors, and interspecific aggression became relatively more frequent than intraspecific aggression for juveniles of the coral-obligate P. moluccensis. This study highlights the importance of coral composition as a determinant of behaviour and diversity of coral-reef fishes.

Resilience in carbonate production despite three coral bleaching events in 5 years on an inshore patch reef in the Florida Keys.

PubMed

Manzello, Derek P; Enochs, Ian C; Kolodziej, Graham; Carlton, Renée; Valentino, Lauren

2018-01-01

The persistence of coral reef frameworks requires that calcium carbonate (CaCO 3 ) production by corals and other calcifiers outpaces CaCO 3 loss via physical, chemical, and biological erosion. Coral bleaching causes declines in CaCO 3 production, but this varies with bleaching severity and the species impacted. We conducted census-based CaCO 3 budget surveys using the established ReefBudget approach at Cheeca Rocks, an inshore patch reef in the Florida Keys, annually from 2012 to 2016. This site experienced warm-water bleaching in 2011, 2014, and 2015. In 2017, we obtained cores of the dominant calcifying coral at this site, Orbicella faveolata , to understand how calcification rates were impacted by bleaching and how they affected the reef-wide CaCO 3 budget. Bleaching depressed O. faveolata growth and the decline of this one species led to an overestimation of mean (± std. error) reef-wide CaCO 3 production by + 0.68 (± 0.167) to + 1.11 (± 0.236) kg m -2  year -1 when using the static ReefBudget coral growth inputs. During non-bleaching years, the ReefBudget inputs slightly underestimated gross production by - 0.10 (± 0.022) to - 0.43 (± 0.100) kg m -2  year -1 . Carbonate production declined after the first year of back-to-back bleaching in 2014, but then increased after 2015 to values greater than the initial surveys in 2012. Cheeca Rocks is an outlier in the Caribbean and Florida Keys in terms of coral cover, carbonate production, and abundance of O. faveolata , which is threatened under the Endangered Species Act. Given the resilience of this site to repeated bleaching events, it may deserve special management attention.

Porites white patch syndrome: associated viruses and disease physiology

NASA Astrophysics Data System (ADS)

Lawrence, S. A.; Davy, J. E.; Wilson, W. H.; Hoegh-Guldberg, O.; Davy, S. K.

2015-03-01

In recent decades, coral reefs worldwide have undergone significant changes in response to various environmental and anthropogenic impacts. Among the numerous causes of reef degradation, coral disease is one factor that is to a large extent still poorly understood. Here, we characterize the physiology of white patch syndrome (WPS), a disease affecting poritid corals on the Great Barrier Reef. WPS manifests as small, generally discrete patches of tissue discolouration. Physiological analysis revealed that chlorophyll a content was significantly lower in lesions than in healthy tissues, while host protein content remained constant, suggesting that host tissue is not affected by WPS. This was confirmed by transmission electron microscope (TEM) examination, which showed intact host tissue within lesions. TEM also revealed that Symbiodinium cells are lost from the host gastrodermis with no apparent harm caused to the surrounding host tissue. Also present in the electron micrographs were numerous virus-like particles (VLPs), in both coral and Symbiodinium cells. Small (<50 nm diameter) icosahedral VLPs were significantly more abundant in coral tissue taken from diseased colonies, and there was an apparent, but not statistically significant, increase in abundance of filamentous VLPs in Symbiodinium cells from diseased colonies. There was no apparent increase in prokaryotic or eukaryotic microbial abundance in diseased colonies. Taken together, these results suggest that viruses infecting the coral and/or its resident Symbiodinium cells may be the causative agents of WPS.

Reflective Light Modulation by Cephalopods and Fishes in Shallow Nearshore Habitats

DTIC Science & Technology

2011-09-30

cephalopods ( octopus , cuttlefish and squid) because they have the most diverse and changeable camouflage patterns known in biology. Several fishes...breakdown is as follows: (1) Puerto Rico, December 2010, to film Octopus vulgaris using camouflage in various habitats, including seagrass, soft corals...patch reefs, and fully developed coral reefs with soft and hard corals; (2) Monterey, California, Hopkins Marine Station, to film Octopus rubescens, a

Bacterial communities associated with Porites white patch syndrome (PWPS) on three western Indian Ocean (WIO) coral reefs.

PubMed

Séré, Mathieu G; Tortosa, Pablo; Chabanet, Pascale; Turquet, Jean; Quod, Jean-Pascal; Schleyer, Michael H

2013-01-01

The scleractinian coral Porites lutea, an important reef-building coral on western Indian Ocean reefs (WIO), is affected by a newly-reported white syndrome (WS) the Porites white patch syndrome (PWPS). Histopathology and culture-independent molecular techniques were used to characterise the microbial communities associated with this emerging disease. Microscopy showed extensive tissue fragmentation generally associated with ovoid basophilic bodies resembling bacterial aggregates. Results of 16S rRNA sequence analysis revealed a high variability between bacterial communities associated with PWPS-infected and healthy tissues in P. lutea, a pattern previously reported in other coral diseases such as black band disease (BBD), white band disease (WBD) and white plague diseases (WPD). Furthermore, substantial variations in bacterial communities were observed at the different sampling locations, suggesting that there is no strong bacterial association in Porites lutea on WIO reefs. Several sequences affiliated with potential pathogens belonging to the Vibrionaceae and Rhodobacteraceae were identified, mainly in PWPS-infected coral tissues. Among them, only two ribotypes affiliated to Shimia marina (NR043300.1) and Vibrio hepatarius (NR025575.1) were consistently found in diseased tissues from the three geographically distant sampling localities. The role of these bacterial species in PWPS needs to be tested experimentally.

The effect of species and colony size on the bleaching response of reef-building corals in the Florida Keys during the 2005 mass bleaching event

NASA Astrophysics Data System (ADS)

Brandt, M. E.

2009-12-01

Understanding the variation in coral bleaching response is necessary for making accurate predictions of population changes and the future state of reefs in a climate of increasing thermal stress events. Individual coral colonies, belonging to inshore patch reef communities of the Florida Keys, were followed through the 2005 mass bleaching event. Overall, coral bleaching patterns followed an index of accumulated thermal stress more closely than in situ temperature measurements. Eight coral species ( Colpophyllia natans, Diploria strigosa, Montastraea cavernosa, M. faveolata, Porites astreoides, P. porites, Siderastrea siderea, and Stephanocoenia intersepta), representing >90% of the coral colonies studied, experienced intense levels of bleaching, but responses varied. Bleaching differed significantly among species: Colpophyllia natans and Diploria strigosa were most susceptible to thermal stress, while Stephanocoenia intersepta was the most tolerant. For colonies of C. natans, M. faveolata, and S. siderea, larger colonies experienced more extensive bleaching than smaller colonies. The inshore patch reef communities of the Florida Keys have historically been dominated by large colonies of Montastraea sp. and Colpophyllia natans. These results provide evidence that colony-level differences can affect bleaching susceptibility in this habitat and suggest that the impact of future thermal stress events may be biased toward larger colonies of dominant reef-building species. Predicted increases in the frequency of mass bleaching and subsequent mortality may therefore result in significant structural shifts of these ecologically important communities.

Scale-dependent effects of habitat on movements and path structure of reef sharks at a predator-dominated atoll.

PubMed

Papastamatiou, Yannis P; Lowe, Christopher G; Caselle, Jennifer E; Friedlander, Alan M

2009-04-01

The effects of habitat on the ecology, movements, and foraging strategies of marine apex predators are largely unknown. We used acoustic telemetry to quantify the movement patterns of blacktip reef sharks (Carcharhinus melanopterus) at Palmyra Atoll National Wildlife Refuge, in the Pacific Ocean. Sharks had relatively small home ranges over a timescale of days to weeks (0.55 +/- 0.24 km2) and showed strong site fidelity to sand-flat ledges within the west lagoon over a three-year period. Sharks showed evidence of diel and tidal movements, and they utilized certain regions of the west lagoon disproportionately. There were ontogenetic shifts in habitat selection, with smaller sharks showing greater selection for sand-flat habitats, and pups (total length 35-61 cm) utilizing very shallow waters on sand-flats, potentially as nursery areas. Adult sharks selected ledge habitats and had lower rates of movement when over sand-flats and ledges than they did over lagoon waters. Fractal analysis of movements showed that over periods of days, sharks used patches that were 3-17% of the scale of their home range. Repeat horizontal movements along ledge habitats consisted of relatively straight movements, which theoretical models consider the most efficient search strategy when forage patches may be spatially and temporally unpredictable. Although sharks moved using a direct walk while in patches, they appeared to move randomly between patches. Microhabitat quantity and quality had large effects on blacktip reef shark movements, which have consequences for the life-history characteristics of the species and potentially the spatial distribution of behaviorally mediated effects on lower trophic levels throughout the Palmyra ecosystem.

Reef productivity and preservation during the Late Neogene

NASA Astrophysics Data System (ADS)

Husson, Laurent; Pastier, Anne-Morwenn; Schmitt, Anais; Sarr, Anta-Clarisse; Elliot, Mary; Pedoja, Kevin; Bezos, Antoine

2016-04-01

During the glacial-interglacials cycles that prevailed during Plio-Pleistocence times, the pace of sea level oscillations exerts a major control on coral reef growth and expansion. We designed a numerical model to quantify reef productivity and carbonate preservation that accounts for sea level oscillations, reef growth, erosion and subsequent geomorphological carving. We carried out a parametric study of a variety of processes (reef growth, erosion, local slope, uplift and subsidence, relative sea level, etc) towards a probabilistic analysis of reef productivity and carbonate production. We further test the effect of the frequency and amplitude of sea level oscillations using sea level curves derived from both the 18O isotope record of past sea level change and synthetic sinusoidal sea level curves. Over a typical climate cycle, our model simulations confirm that the rate of sea level change is the primary controlling factor of reef production, as it modifies the productivity by several orders of magnitude. Most importantly, reef productivity increases during periods of sea level rise, and decreases during sea level stands, while conversely, the morphology records the opposite in a misleading fashion: Reef terraces expand during sea level stands due to the joint effects of erosion and patient reef growth at a stationary level until the accommodation space is filled up. On the long-term, over the Plio-Pleistocene period, vertical ground motion also significantly alters the production: moderate uplift or subsidence can boost reef productivity up to tenfold with respect to a stationary coastline. Last, the amplitude and frequency of the sea level oscillations (typically 40 kyrs vs. 100 kyrs periods) moderately impact reef productivity. These results can be ultimately converted into estimates of carbonate production and carbon sequestration during the Late Neogene, provided relative sea level is documented in the tectonically agitated intertropical zone.

Mesopredator trophodynamics on thermally stressed coral reefs

NASA Astrophysics Data System (ADS)

Hempson, Tessa N.; Graham, Nicholas A. J.; MacNeil, M. Aaron; Hoey, Andrew S.; Almany, Glenn R.

2018-03-01

Ecosystems are becoming vastly modified through disturbance. In coral reef ecosystems, the differential susceptibility of coral taxa to climate-driven bleaching is predicted to shift coral assemblages towards reefs with an increased relative abundance of taxa with high thermal tolerance. Many thermally tolerant coral species are characterised by low structural complexity, with reduced habitat niche space for the small-bodied coral reef fishes on which piscivorous mesopredators feed. This study used a patch reef array to investigate the potential impacts of climate-driven shifts in coral assemblages on the trophodynamics of reef mesopredators and their prey communities. The `tolerant' reef treatment consisted only of coral taxa of low susceptibility to bleaching, while `vulnerable' reefs included species of moderate to high thermal vulnerability. `Vulnerable' reefs had higher structural complexity, and the fish assemblages that established on these reefs over 18 months had higher species diversity, abundance and biomass than those on `tolerant' reefs. Fish assemblages on `tolerant' reefs were also more strongly influenced by the introduction of a mesopredator ( Cephalopholis boenak). Mesopredators on `tolerant' reefs had lower lipid content in their muscle tissue by the end of the 6-week experiment. Such sublethal energetic costs can compromise growth, fecundity, and survivorship, resulting in unexpected population declines in long-lived mesopredators. This study provides valuable insight into the altered trophodynamics of future coral reef ecosystems, highlighting the potentially increased vulnerability of reef fish assemblages to predation as reef structure declines, and the cost of changing prey availability on mesopredator condition.

Archaeological and Paleontological Salvage at Barbers Point, Oahu

DTIC Science & Technology

1978-03-01

Isognomon aalifo~iaum Pinatada galtsoffi TeUina ~ugosa ECHINODERMATA ( sea urchins ) Coloboaent~otus at~atus Eahinomet~a n~thaei Eahinot~ diadema...galtsoffi Tellina rugosa ECHINODERMATA ( sea urchins ) Coloboaentrotus atratus Eahinometra mathaei Eahinothrix diadema Heteroeentrotus mammillatus...Ewa Plain, a former coral-algae calcareous reef that emerged following the post-Pleistocene sea -level subsidence. The topography that usually results

On the long-lasting sequences of coral reef terraces from SE Sulawesi (Indonesia): Distribution, formation, and global significance

NASA Astrophysics Data System (ADS)

Pedoja, Kevin; Husson, Laurent; Bezos, Antoine; Pastier, Anne-Morwenn; Imran, Andy Muhammad; Arias-Ruiz, Camilo; Sarr, Anta-Clarisse; Elliot, Mary; Pons-Branchu, Edwige; Nexer, Maëlle; Regard, Vincent; Hafidz, Abdul; Robert, Xavier; Benoit, Laurent; Delcaillau, Bernard; Authemayou, Christine; Dumoulin, Caroline; Choblet, Gaël

2018-05-01

Many islands of the eastern Indonesian Archipelago exhibit Late Cenozoic sequences of coral reef terraces. In SE Sulawesi, on the Tukang Besi and Buton archipelagos, we identified 23 islands bearing such sequences. Remote sensing imagery and field mapping combined to U/Th and 14C dating enable to establish a chronologic framework of the reef terrace sequences from Wangi-Wangi, Buton as well as on the neighbouring, smaller islands of Ular, Siumpu and Kadatua. We identified the terraces from the last interglacial maximum (MIS 5e) at elevations lower than 20 m except on W Kadatua where it is raised at 34 ± 5 m. Such elevations yield low to moderate Upper Pleistocene uplift rates (<0.3 mm yr-1). On SE Buton Island, a sequence culminates at 650 m and includes at least 40 undated strandlines. Next to this exceptional sequence, on the Sampolawa Peninsula, 18 strandlines culminate at 430 m. Dated samples at the base of this sequence (<40 m) yield mean Middle Pleistocene uplift rates of 0.14 ± 0.09 mm yr-1. Extrapolation of these uplift rates compared to the geological setting suggests that the sequences of the Sampolawa Peninsula provide a record of sea-level high-stands for the last 3.8 ± 0.6 Ma. The sequences on SE Buton Island therefore constitute the best preserved long-lasting geomorphic record of Plio-Quaternary sea-level stands worldwide.

Shelf stratigraphy and the influence of antecedent substrate on Holocene reef development, south Oahu, Hawaii

USGS Publications Warehouse

Grossman, E.E.; Barnhardt, W.A.; Hart, P.; Richmond, B.M.; Field, M.E.

2006-01-01

Paired analyses of drill cores and high-resolution seismic reflection data show that development of Holocene framework reefs on the Oahu (Hawaii) shelf is limited to settings of low wave energy and to the period 8000 to 3000 yr BP. A prominent bounding surface that is mapped across much of the Oahu shelf is an erosion surface cut into Marine Isotope Stages 5 and 7 limestones that show extensive loss of primary porosity, aragonite, and MgCO3 owing to meteoric and vadose-zone diagenesis. This acoustic reflector is found exposed at the surface where wave energy is high or in the shallow subsurface below Holocene reef and sand sheet deposits where energy is low. Ship-towed video along 30 km of the shelf reveals a steady decrease in limestone accumulation from offshore of Honolulu southeast to Koko Head where the seafloor is characterized by volcanic pavement and/or thin sand deposits. This may reflect the build-up of late Pleistocene volcanics associated with the Hanauma Bay eruption (30,000-7000 yr BP) that now comprise the substrate in depths shallow enough to limit reef accretion. The absence of significant Holocene reef build-up on the south Oahu shelf is consistent with observations from north-facing coasts that lack Holocene reefs, indicating that Holocene reef formation in Hawaii is complex and patchy.

Changes in coral-reef structure through the Miocene in the Mediterranean province: Adaptive versus environmental influence

NASA Astrophysics Data System (ADS)

Pomar, Luis; Hallock, Pamela

2007-10-01

Well-documented Mediterranean examples of Miocene carbonate platforms, with complete exposures from shallow-water to basinal facies, provide evidence for temporal changes in reef-building capacity of zooxanthellate corals. In pre-late Tortonian platforms, small coralgal patches and mounds occur from platform top to the toe of slope, but they did not build to sea level. In contrast, barrier reefs with unequivocal reef-crest structures that reached sea level are documented in late Tortonian-early Messinian platforms. We suggest that a change in both calcification rates and bathymetric zonation was the result of coevolution of corals and Symbiodinium zooxanthellae, coeval to global cooling and, at least at a regional scale, a geochemical change that supported widespread aragonite precipitation through the late Miocene.

Yellow band disease compromises the reproductive output of the Caribbean reef-building coral Montastraea faveolata (Anthozoa, Scleractinia).

PubMed

Weil, Ernesto; Cróquer, Aldo; Urreiztieta, Isabel

2009-11-16

Sexual reproduction is critical to coral population dynamics and the long-term regeneration of coral reefs. Bleaching, disease, and/or anthropogenic-induced tissue/colony loss reduce reproductive output. This is the first attempt to explore the effect of a biotic disease on the reproduction of scleractinian corals. The study aimed to assess the effect of yellow band disease (YBD) on the reproduction of the important Caribbean reef-builder Montastraea faveolata. Tissue samples were collected from diseased, transition, and healthy-looking areas in each of 5 infected colonies and from 5 healthy controls in southwest Puerto Rico. The effect of disease-induced mortality was assessed by collecting samples from the edge and center of surviving small and large, healthy-looking tissue patches from large, previously infected tagged colonies. Fecundity was significantly lower in disease lesions compared to transition and healthy-looking tissues and the controls (99% fewer eggs). Fecundity in transition areas was significantly lower (50%) than in healthy-looking tissues in diseased colonies, which had 23% lower fecundity than control tissues. Although this fecundity drop was not statistically significant, it could indicate a systemic effect of YBD across the colony. Large and small patches had 64 and 84% fewer eggs than controls, respectively, and edge polyps had 97% fewer eggs than those in central control areas. Field observations of the spawning behavior of each tissue area corroborated the histological results. Our results indicate that YBD significantly compromises the reproductive output of M. faveolata, potentially reducing the fitness and consequently, the recovery of this important reef-building species on Caribbean coral reefs.

Protection of fish spawning habitat for the conservation of warm temperate reef fish fisheries of shelf-edge reefs of Florida

USGS Publications Warehouse

Koenig, Christopher C.; Coleman, Felicia C.; Grimes, Churchill B.; Fitzhugh, Gary R.; Scanlon, Kathryn M.; Gledhill, Christopher T.; Grace, Mark

2000-01-01

We mapped and briefly describe the surficial geology of selected examples of shelfedge reefs (50–120 m deep) of the southeastern United States, which are apparently derived from ancient Pleistocene shorelines and are intermittently distributed throughout the region. These reefs are ecologically significant because they support a diverse array of fish and invertebrate species, and they are the only aggregation spawning sites of gag (Mycteroperca microlepis), scamp (M. phenax), and other economically important reef fish. Our studies on the east Florida shelf in the Experimental Oculina Research Reserve show that extensive damage to the habitat-structuring coral Oculina varicosa has occurred in the past, apparently from trawling and dredging activities of the 1970s and later. On damaged or destroyed Oculina habitat, reef-fish abundance and diversity are low, whereas on intact habitat, reef-fish diversity is relatively high compared to historical diversity on the same site. The abundance and biomass of the economically important reef fish was much higher in the past than it is now, and spawning aggregations of gag and scamp have been lost or greatly reduced in size. On the west Florida shelf, fishers have concentrated on shelf-edge habitats for over 100 yrs, but fishing intensity increased dramatically in the 1980s. Those reefs are characterized by low abundance of economically important species. The degree and extent of habitat damage there is unknown. We recommend marine fishery reserves to protect habitat and for use in experimentally examining the potential production of unfished communities.

Protection of fish spawning habitat for the conservation of warm-temperature reef-fish fisheries of shelf-edge reefs of Florida

USGS Publications Warehouse

Koenig, Christopher C.; Coleman, Felicia C.; Grimes, Churchill B.; Fitzhugh, Gary R.; Scanlon, Kathryn M.; Gledhill, Christopher T.; Grace, Mark

2000-01-01

We mapped and briefly describe the surficial geology of selected examples of shelf-edge reefs (50–120 m deep) of the southeastern United States, which are apparently derived from ancient Pleistocene shorelines and are intermittently distributed throughout the region. These reefs are ecologically significant because they support a diverse array of fish and invertebrate species, and they are the only aggregation spawning sites of gag (Mycteroperca microlepis), scamp (M. phenax), and other economically important reef fish. Our studies on the east Florida shelf in the Experimental Oculina Research Reserve show that extensive damage to the habitat-structuring coral Oculina varicosa has occurred in the past, apparently from trawling and dredging activities of the 1970s and later. On damaged or destroyed Oculina habitat, reef-fish abundance and diversity are low, whereas on intact habitat, reef-fish diversity is relatively high compared to historical diversity on the same site. The abundance and biomass of the economically important reef fish was much higher in the past than it is now, and spawning aggregations of gag and scamp have been lost or greatly reduced in size. On the west Florida shelf, fishers have concentrated on shelf-edge habitats for over 100 yrs, but fishing intensity increased dramatically in the 1980s. Those reefs are characterized by low abundance of economically important species. The degree and extent of habitat damage there is unknown. We recommend marine fishery reserves to protect habitat and for use in experimentally examining the potential production of unfished communities.

Elevated temperatures and bleaching on a high latitude coral reef: the 1988 Bermuda event

NASA Astrophysics Data System (ADS)

Cook, Clayton B.; Logan, Alan; Ward, Jack; Luckhurst, Brian; Berg, Carl J.

1990-03-01

Sea temperatures were normal in Bermuda during 1987, when Bermuda escaped the episodes of coral bleaching which were prevalent throughout the Caribbean region. Survey transecs in 1988 on 4 6 m reefs located on the rim margin and on a lagoonal patch reef revealed bleaching only of zoanthids between May and July. Transect and tow surveys in August and September revealed bleaching of several coral species; Millepora alcicornis on rim reefs was the most extensively affected. The frequency of bleaching in this species, Montastrea annularis and perhaps Diploria labyrinthiformis was significantly higher on outer reefs than on inshore reefs. This bleaching period coincided with the longest period of elevated sea temperatures in Bermuda in 38 years (28.9 30.9°C inshore, >28° offshore). By December, when temperatures had returned to normal, bleaching of seleractinians continued, but bleaching of M. alcicornis on the outer reefs was greatly reduced. Our observations suggest that corals which normally experience wide temperature ranges are less sensitive to thermal stress, and that high-latitude reef corals are sensitive to elevated temperatures which are within the normal thermal range of corals at lower latitudes.

[Structure of reef fish communities in Catalinas Islands and Ocotal beach, North Pacific of Costa Rica].

PubMed

Espinoza, Mario; Salas, Eva

2005-01-01

The reefs are heterogeneous systems that maintain a high diversity of organisms. Fish community structure varies within and among reefs, so it would be expected that reef structure and heterogeneity should affect fish communities inhabiting reefs. Four reef patches at Catalinas Islands (Sur, La Pared, Roca Sucia and Sombrero) and one in Ocotal beach (10 degrees 28'45" N; 85 degrees 52'35" W) were studied with visual censuses (July-December 2003). The structure and composition of fishes between Catalinas islands and Ocotal beach were different, and habitat structure and composition explain most of the variance founded. The presence of the fleshy algae Caulerpa sertularioides in Ocotal, and the corals Tubastrea coccinea and Pocillopora spp. at Catalinas Island explained the variability among sites and how it affected fish community structure and composition. The butterfly fish Johnrandallia nigrirostris, damselfish Microspathodon dorsalis, and surgeon fish Prionurus punctatus were directly correlated with the ahermatipic coral Tubastrea coccinea in Roca Sucia reef, while the angel fish Holacanthus passer was associated to reefs with a major percentage of rocky substrate. Other species such as the damselfish Abudefduf troschelli and Halichoeres dispilus were more abundant at Ocotal, where the algae C sertularioides dominated. The number and abundance of reef fishes was directly correlated with the rugosity index at the reefs of Roca Sucia and Ocotal, but not at reefs of La Pared and Sombrero.

Habitat degradation is threatening reef replenishment by making fish fearless.

PubMed

Lönnstedt, Oona M; McCormick, Mark I; Chivers, Douglas P; Ferrari, Maud C O

2014-09-01

Habitat degradation is one of the 'Big Five' drivers of biodiversity loss. However, the mechanisms responsible for this progressive loss of biodiversity are poorly understood. In marine ecosystems, corals play the role of ecosystem engineers, providing essential habitat for hundreds of thousands of species and hence their health is crucial to the stability of the whole ecosystem. Climate change is causing coral bleaching and degradation, and while this has been known for a while, little do we know about the cascading consequences of these events on the complex interrelationships between predators and their prey. The goal of our study was to investigate, under completely natural conditions, the effect of coral degradation on predator-prey interactions. Settlement stage ambon damselfish (Pomacentrus amboinensis), a common tropical fish, were released on patches of healthy or dead corals, and their behaviours in situ were measured, along with their response to injured conspecific cues, a common risk indicator. This study also explored the effect of habitat degradation on natural levels of mortality at a critical life-history transition. We found that juveniles in dead corals displayed risk-prone behaviours, sitting further away and higher up on the reef patch, and failed to respond to predation cues, compared to those on live coral patches. In addition, in situ survival experiments over 48 h indicated that juveniles on dead coral habitats had a 75% increase in predation-related mortality, compared to fish released on live, healthy coral habitats. Our results provide the first of many potential mechanisms through which habitat degradation can impact the relationship between prey and predators in the coral reef ecosystem. As the proportion of dead coral increases, the recruitment and replenishment of coral reef fishes will be threatened, and so will the level of diversity in these biodiversity hot spots. © 2014 The Authors. Journal of Animal Ecology © 2014 British Ecological Society.

Key Largo Limestone revisited: Pleistocene shelf-edge facies, Florida Keys, USA

USGS Publications Warehouse

Gray, Multer H.; Gischler, E.; Lundberg, J.; Simmons, K.R.; Shinn, E.A.

2002-01-01

New dates and analysis of 12 deep and 57 shallow cores allow a more detailed interpretation of the Pleistocene shelf edge of the Florida Platform as found in various facies of the Key Largo Limestone beneath the Florida Keys. In this study a three-phase evolution of the Quaternary units (Q1-Q5) of the Key Largo is presented with new subdivision of the Q5. (1) In the first phase, the Q1 and Q2 (perhaps deposited during oxygen-isotope stage 11) deep-water quartz-rich environment evolved into a shallow carbonate phase. (2) Subsequently, a Q3 (presumably corresponding to oxygen-isotope stage 9) flourishing reef and productive high-platform sediment phase developed. (3) Finally, a Q4 and Q5 (corresponding to oxygen-isotope stages 7 and 5) stabilization phase occured with reefs and leeward productive lagoons, followed by lower sea levels presenting a sequence of younger (isotope substages 5c, 5a) shelf-margin wedges, sediment veneers and outlier reefs. The Key Largo Limestone provides an accessible model of a carbonate shelf edge with fluctuating water depth, bordering a deep seaward basin for a period of at least 300 ka. During this time, at least four onlaps/offlaps, often separated by periods of karst development with associated diagenetic alterations, took place. The story presented by this limestone not only allows a better understanding of the history of south Florida but also aids in the interpretation of similar persistent shelf-edge sites bordering deep basins in other areas.

Multi-scale interactions between local hydrography, seabed topography, and community assembly on cold-water coral reefs

NASA Astrophysics Data System (ADS)

Henry, L.-A.; Moreno Navas, J.; Roberts, J. M.

2013-04-01

We investigated how interactions between hydrography, topography and species ecology influence the assembly of species and functional traits across multiple spatial scales of a cold-water coral reef seascape. In a novel approach for these ecosystems, we used a spatially resolved complex three-dimensional flow model of hydrography to help explain assembly patterns. Forward-selection of distance-based Moran's eigenvector mapping (dbMEM) variables identified two submodels of spatial scales at which communities change: broad-scale (across reef) and fine-scale (within reef). Variance partitioning identified bathymetric and hydrographic gradients important in creating broad-scale assembly of species and traits. In contrast, fine-scale assembly was related more to processes that created spatially autocorrelated patches of fauna, such as philopatric recruitment in sessile fauna, and social interactions and food supply in scavenging detritivores and mobile predators. Our study shows how habitat modification of reef connectivity and hydrography by bottom fishing and renewable energy installations could alter the structure and function of an entire cold-water coral reef seascape.

Holocene reef development where wave energy reduces accommodation

USGS Publications Warehouse

Grossman, Eric E.; Fletcher, Charles H.

2004-01-01

Analyses of 32 drill cores obtained from the windward reef of Kailua Bay, Oahu, Hawaii, indicate that high wave energy significantly reduced accommodation space for reef development in the Holocene and produced variable architecture because of the combined influence of sea-level history and wave exposure over a complex antecedent topography. A paleostream valley within the late Pleistocene insular limestone shelf provided accommodation space for more than 11 m of vertical accretion since sea level flooded the bay 8000 yr BP. Virtually no net accretion (pile-up of fore-reef-derived rubble (rudstone) and sparse bindstone, and (3) a final stage of catch-up bindstone accretion in depths > 6 m. Coral framestone accreted at rates of 2.5-6.0 mm/yr in water depths > 11 m during the early Holocene; it abruptly terminated at ~4500 yr BP because of wave scour as sea level stabilized. More than 4 m of rudstone derived from the upper fore reef accreted at depths of 6 to 13 m below sea level between 4000 and 1500 yr BP coincident with late Holocene relative sea-level fall. Variations in the thickness, composition, and age of these reef facies across spatial scales of 10-1000 m within Kailua Bay illustrate the importance of antecedent topography and wave-related stress in reducing accommodation space for reef development set by sea level. Although accommodation space of 6 to 17 m has existed through most of the Holocene, the Kailua reef has been unable to catch up to sea level because of persistent high wave stress.

Modelling reef zonation in the Greater St Lucia Wetland Park, South Africa

NASA Astrophysics Data System (ADS)

Schleyer, Michael H.; Celliers, Louis

2005-05-01

East Africa has a rich coral fauna that extends to Maputaland in KwaZulu-Natal, South Africa. At this latitude, considered high and marginal for coral distribution and development, they form a veneer on limited, late Pleistocene reefs rather than forming the accretive, aragonite structures known as coral reefs. It is thus more appropriate to refer to them in this region as coral communities, the environment being rendered marginal for their development by reduced temperatures, light and aragonite saturation state. Subsequent to their discovery, the reefs were afforded protection within two Marine Protected Areas (the St Lucia and Maputaland Marine Reserves). They are found primarily within three reef complexes, with only the central complex being readily accessible to the public for ecotourism at present. With the creation of the Greater St Lucia Wetland Park, a World Heritage Site, and the expectation of an accompanying increase in ecotourism, the status quo seems set to change. The reefs are thus the current focus of a modelling initiative to provide decision support in their management. This paper examines the unique nature of the South African communities, their vulnerability and importance in the regional and global context, and, using representative data from the model, how an anticipated increase in their use could affect their sustainability. The case for scientifically based zonation for their use is presented.

Repeated invasions into the twilight zone: evolutionary origins of a novel assemblage of fishes from deep Caribbean reefs.

PubMed

Tornabene, Luke; Van Tassell, James L; Robertson, D Ross; Baldwin, Carole C

2016-08-01

Mesophotic and deeper reefs of the tropics are poorly known and underexplored ecosystems worldwide. Collectively referred to as the 'twilight zone', depths below ~30-50 m are home to many species of reef fishes that are absent from shallower depths, including many undescribed and endemic species. We currently lack even a basic understanding of the diversity and evolutionary origins of fishes on tropical mesophotic reefs. Recent submersible collections in the Caribbean have provided new specimens that are enabling phylogenetic reconstructions that incorporate deep-reef representatives of tropical fish genera. Here, we investigate evolutionary depth transitions in the family Gobiidae (gobies), the most diverse group of tropical marine fishes. Using divergence-time estimation coupled with stochastic character mapping to infer the timing of shallow-to-deep habitat transitions in gobies, we demonstrate at least four transitions from shallow to mesophotic depths. Habitat transitions occurred in two broad time periods (Miocene, Pliocene-Pleistocene), and may have been linked to the availability of underutilized niches, as well as the evolution of morphological/behavioural adaptations for life on deep reefs. Further, our analysis shows that at least three evolutionary lineages that invaded deep habitats subsequently underwent speciation, reflecting another unique mode of radiation within the Gobiidae. Lastly, we synthesize depth distributions for 95 species of Caribbean gobies, which reveal major bathymetric faunal breaks at the boundary between euphotic and mesophotic reefs. Ultimately, our study is the first rigorous investigation into the origin of Caribbean deep-reef fishes and provides a framework for future studies that utilize rare, deep-reef specimens. © 2016 John Wiley & Sons Ltd.

Early survivorship of juvenile coral reef fishes

NASA Astrophysics Data System (ADS)

Sale, Peter F.; Ferrell, Douglas J.

1988-12-01

Data on early survivorship of newly settled reef fish were collected by monitoring individuals which recruited to 30 small lagoonal patch reefs over three summers. Preliminary survivorship curves spanning the first 45 days after settlement were derived for 17 species. Most species showed greatest rates of mortality in the first 1 2 weeks in the reef environment however there were substantial differences among species in the extent and the temporal pattern of this. In six species, 75% of individuals survived the 45 days, while in 5 others, 20% or fewer survived that long. In eight species, mortality was negligible after the first 14 days. In the other 9, significant mortality occurred in subsequent weeks. Patterns of survivorship did not appear to differ substantially among years in five of the six species for which data were adequate. In particular, survivorship did not appear to be different among years even when levels of recruitment varied greatly.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Opdyke, B.N.; Walker, J.C.G.

Differences in the rate of coral reef carbonate deposition from the Pleistocene to the Holocene may account for the Quaternary variation of atmospheric CO[sub 2]. Volumes of carbonate associated with Holocene reefs require an average deposition rate of 2.0 [times] 10[sup 13] mol/yr for the past 5 ka. In light of combined riverine, mid-ocean ridge, and ground-water fluxes of calcium to the oceans of 2.3 [times] 10[sub 13] mol/yr, the current flux of calcium carbonate to pelagic sediments must be far below the Pleistocene average of 1.2 [times] 10[sub 13] mol/yr. The authors suggest that sea-level change shifts the locusmore » of carbonate deposition from the deep sea to the shelves as the normal glacial-interglacial pattern of deposition of Quaternary global carbonates. To assess the impact of these changes on atmospheric CO[sub 2], a simple numerical simulation of the global carbon cycle was developed. Atmospheric CO[sub 2] as well as calcite saturation depth and sediment responses to these carbonate deposition changes are examined. Atmospheric CO[sub 2] changes close to those observed in the Vostok ice core, [approximately] 80 ppm CO[sub 2], for the Quaternary are observed as well as the approximate depth changes in percent carbonate of sediments measured in the Pacific Ocean over the same time interval.« less

Magnetostratigraphy of reef limestones -a case study in Ryukyu Group, Okinawa, Japan-

NASA Astrophysics Data System (ADS)

Anai, C.; Shibuya, H.; Mochizuki, N.

2017-12-01

The Ryukyu Group in Ryukyu islands consists of reef limestones of Pleistocene in age, and records regression-transgression cycles of the age. It has great importance for providing the precise sea level changes around Middle-Pleistocene climate transition from 40kyr cycle to 100kyr. In order to assign a geochronological marker in the age of the transition, we investigate the magnetostratigraphical studies of the Ryukyu Group in Miyakojima island. Paleomagnetic samples were collected at 20 sites from all of 5 sequence-stratigraphic units appeared in Miyakojima island (MY-Unit 1 to 5 in ascending order). The conventional thermal demagnetization procedure provides reliable polarity only in 7 sites. For remaining 13 sites, we applied a novel technique of reductive chemical demagnetization (RCD) in addition to the conventional alternating field demagnetization. This hybrid technique successfully erased the overprinting magnetic components and unveiled the primary component. Paleomagnetic directions of 20 sites show that the studied sequence records a polarity transition from reversed to normal, and the transition is at the lowest part of the MY-Unit 4. Previous calcareous nannofossil studies show that the reversal corresponds to the Matuyama-Brunhes boundary. It enables us to correlate the Ryukyu limestones with the timing of the climate transition.

Development of small carbonate banks on the south Florida platform margin: Response to sea level and climate change

USGS Publications Warehouse

Mallinson, David J.; Hine, Albert C.; Hallock, Pamela; Locker, Stanley D.; Shinn, Eugene; Naar, David; Donahue, Brian; Weaver, Douglas C.

2003-01-01

Geophysical and coring data from the Dry Tortugas, Tortugas Bank, and Riley’s Hump on the southwest Florida margin reveal the stratigraphic framework and growth history of these carbonate banks. The Holocene reefs of the Dry Tortugas and Tortugas Bank are approximately 14 and 10 m thick, respectively, and are situated upon Pleistocene reefal edifices. Tortugas Bank consists of the oldest Holocene corals in the Florida Keys with earliest coral recruitment occurring at ∼9.6 cal ka. Growth curves for the Tortugas Bank reveal slow growth (<1 mm/yr) until 6.2 cal ka, then a rapid increase to 3.4 mm/yr, until shallow reef demise at ∼4.2 cal ka. Coral reef development at the Dry Tortugas began at ∼6.4 cal ka. Aggradation at the Dry Tortugas was linear, and rapid (∼3.7 mm/yr) and kept pace with sea-level change. The increase in aggradation rate of Tortugas Bank at 6.2 cal ka is attributed to the growth of the Dry Tortugas reefs, which formed a barrier to inimical shelf water. Termination of shallow (<15 m below sea level) reef growth at Tortugas Bank at ∼4.2 cal ka is attributed to paleoclimate change in the North American interior that increased precipitation and fluvial discharge. Reef growth rates and characteristics are related to the rate of sea-level rise relative to the position of the reef on the shelf margin, and are additionally modified by hydrographic conditions related to climate change.

Coral Reefs at the Northernmost Tip of Borneo: An Assessment of Scleractinian Species Richness Patterns and Benthic Reef Assemblages

PubMed Central

Waheed, Zarinah; van Mil, Harald G. J.; Syed Hussein, Muhammad Ali; Jumin, Robecca; Golam Ahad, Bobita; Hoeksema, Bert W.

2015-01-01

The coral reefs at the northernmost tip of Sabah, Borneo will be established under a marine protected area: the Tun Mustapha Park (TMP) by the end of 2015. This area is a passage where the Sulu Sea meets the South China Sea and it is situated at the border of the area of maximum marine biodiversity, the Coral Triangle. The TMP includes fringing and patch reefs established on a relatively shallow sea floor. Surveys were carried out to examine features of the coral reefs in terms of scleractinian species richness, and benthic reef assemblages following the Reef Check substrate categories, with emphasis on hard coral cover. Variation in scleractinian diversity was based on the species composition of coral families Fungiidae (n = 39), Agariciidae (n = 30) and Euphylliidae (n = 15). The number of coral species was highest at reefs with a larger depth gradient i.e. at the periphery of the study area and in the deep South Banggi Channel. Average live hard coral cover across the sites was 49%. Only 7% of the examined reefs had > 75% hard coral cover, while the majority of the reef sites were rated fair (51%) and good (38%). Sites with low coral cover and high rubble fragments are evidence of blast fishing, although the observed damage appeared old. Depth was a dominant factor in influencing the coral species composition and benthic reef communities in the TMP. Besides filling in the information gaps regarding species richness and benthic cover for reef areas that were previously without any data, the results of this study together with information that is already available on the coral reefs of TMP will be used to make informed decisions on zoning plans for conservation priorities in the proposed park. PMID:26719987

Coral Reefs at the Northernmost Tip of Borneo: An Assessment of Scleractinian Species Richness Patterns and Benthic Reef Assemblages.

PubMed

Waheed, Zarinah; van Mil, Harald G J; Syed Hussein, Muhammad Ali; Jumin, Robecca; Golam Ahad, Bobita; Hoeksema, Bert W

2015-01-01

The coral reefs at the northernmost tip of Sabah, Borneo will be established under a marine protected area: the Tun Mustapha Park (TMP) by the end of 2015. This area is a passage where the Sulu Sea meets the South China Sea and it is situated at the border of the area of maximum marine biodiversity, the Coral Triangle. The TMP includes fringing and patch reefs established on a relatively shallow sea floor. Surveys were carried out to examine features of the coral reefs in terms of scleractinian species richness, and benthic reef assemblages following the Reef Check substrate categories, with emphasis on hard coral cover. Variation in scleractinian diversity was based on the species composition of coral families Fungiidae (n = 39), Agariciidae (n = 30) and Euphylliidae (n = 15). The number of coral species was highest at reefs with a larger depth gradient i.e. at the periphery of the study area and in the deep South Banggi Channel. Average live hard coral cover across the sites was 49%. Only 7% of the examined reefs had > 75% hard coral cover, while the majority of the reef sites were rated fair (51%) and good (38%). Sites with low coral cover and high rubble fragments are evidence of blast fishing, although the observed damage appeared old. Depth was a dominant factor in influencing the coral species composition and benthic reef communities in the TMP. Besides filling in the information gaps regarding species richness and benthic cover for reef areas that were previously without any data, the results of this study together with information that is already available on the coral reefs of TMP will be used to make informed decisions on zoning plans for conservation priorities in the proposed park.

Regional hard coral distribution within geomorphic and reef flat ecological zones determined by satellite imagery of the Xisha Islands, South China Sea

NASA Astrophysics Data System (ADS)

Zuo, Xiuling; Su, Fenzhen; Zhao, Huanting; Zhang, Junjue; Wang, Qi; Wu, Di

2017-05-01

Coral reefs in the Xisha Islands (also known as the Paracel Islands in English), South China Sea, have experienced dramatic declines in coral cover. However, the current regional scale hard coral distribution of geomorphic and ecological zones, essential for reefs management in the context of global warming and ocean acidification, is not well documented. We analyzed data from field surveys, Landsat-8 and GF-1 images to map the distribution of hard coral within geomorphic zones and reef flat ecological zones. In situ surveys conducted in June 2014 on nine reefs provided a complete picture of reef status with regard to live coral diversity, evenness of coral cover and reef health (live versus dead cover) for the Xisha Islands. Mean coral cover was 12.5% in 2014 and damaged reefs seemed to show signs of recovery. Coral cover in sheltered habitats such as lagoon patch reefs and biotic dense zones of reef flats was higher, but there were large regional differences and low diversity. In contrast, the more exposed reef slopes had high coral diversity, along with high and more equal distributions of coral cover. Mean hard coral cover of other zones was <10%. The total Xisha reef system was estimated to cover 1 060 km2, and the emergent reefs covered 787 m2. Hard corals of emergent reefs were considered to cover 97 km2. The biotic dense zone of the reef flat was a very common zone on all simple atolls, especially the broader northern reef flats. The total cover of live and dead coral can reach above 70% in this zone, showing an equilibrium between live and dead coral as opposed to coral and algae. This information regarding the spatial distribution of hard coral can support and inform the management of Xisha reef ecosystems.

Long-Term Effects of the Cleaner Fish Labroides dimidiatus on Coral Reef Fish Communities

PubMed Central

Waldie, Peter A.; Blomberg, Simon P.; Cheney, Karen L.; Goldizen, Anne W.; Grutter, Alexandra S.

2011-01-01

Cleaning behaviour is deemed a mutualism, however the benefit of cleaning interactions to client individuals is unknown. Furthermore, mechanisms that may shift fish community structure in the presence of cleaning organisms are unclear. Here we show that on patch reefs (61–285 m2) which had all cleaner wrasse Labroides dimidiatus (Labridae) experimentally removed (1–5 adults reef−1) and which were then maintained cleaner-fish free over 8.5 years, individuals of two site-attached (resident) client damselfishes (Pomacentridae) were smaller compared to those on control reefs. Furthermore, resident fishes were 37% less abundant and 23% less species rich per reef, compared to control reefs. Such changes in site-attached fish may reflect lower fish growth rates and/or survivorship. Additionally, juveniles of visitors (fish likely to move between reefs) were 65% less abundant on removal reefs suggesting cleaners may also affect recruitment. This may, in part, explain the 23% lower abundance and 33% lower species richness of visitor fishes, and 66% lower abundance of visitor herbivores (Acanthuridae) on removal reefs that we also observed. This is the first study to demonstrate a benefit of cleaning behaviour to client individuals, in the form of increased size, and to elucidate potential mechanisms leading to community-wide effects on the fish population. Many of the fish groups affected may also indirectly affect other reef organisms, thus further impacting the reef community. The large-scale effect of the presence of the relatively small and uncommon fish, Labroides dimidiadus, on other fishes is unparalleled on coral reefs. PMID:21731670

The oldest Quaternary ooids and young reefs in the eastern Indian Ocean, evidence from the Northwest Shelf of Australia, IODP Expedition 356.

NASA Astrophysics Data System (ADS)

Gallagher, S. J.; Reuning, L.; Himmler, T.; Henderiks, J.; De Vleeschouwer, D.; Groeneveld, J.; Fulthorpe, C.; Bogus, K.; Expedition 356 Scientists, I.

2016-12-01

Modern reefs are common in the Indian Ocean off the west coast of Australia (south of 15°S) where the warm Leeuwin Current extends their modern distribution to 29°S. Two key features that distinguish these tropical from non-tropical carbonates are the presence of coral reefs and ooids. Coral reefs are generally confined to seawater >18°C. Ooids form at temperatures >20°C with salinities >37‰. Modern ooids are forming in the hypersaline Shark Bay and are well known from late Quaternary strata in the region. Globally, marine ooids have been interpreted to be direct evidence of physiochemical precipitation from seawater during periods of elevated alkalinity and supersaturation. Their occurrence in the subsurface of the Northwest Shelf of Australia (NWS) may be used as sea surface temperature, palaeobathymetry and aridity indices. However, the longer-term history of reefs and ooids is not well constrained in the NWS. IODP expedition 356 cored a series of sections down dip from the Houtman-Abrolhos (29°S) and Barrow Island reefs (22°S) and up dip from the Rowley Shoals (18°S) to determine their age and origin. The stratigraphy of the cored sections was mapped using regional seismic data to constrain the age of reef onset. Coring also yielded several horizons of pre-late Quaternary ooids. Our analyses reveals that reefs from 22°S to 30°S are younger than 600,000 years old and that ooids are present in strata up to 750,000 years old. We suggest stronger Leeuwin Current activity related to an enhanced Indonesian Throughflow and increased aridity triggered tropical carbonate expansion on the Northwest Shelf during the Middle Pleistocene Transition. Knowledge of the timing and circumstances that triggered tropical reef development in the Indo-Pacific in the past is critical if we are to understand the resilience of modern reefs with future climate change.

Fine-scale environmental specialization of reef-building corals might be limiting reef recovery in the Florida Keys.

PubMed

Kenkel, Carly D; Almanza, Albert T; Matz, Mikhail V

2015-12-01

Despite decades of monitoring global reef decline, we are still largely unable to explain patterns of reef deterioration at local scales, which precludes the development of effective management strategies. Offshore reefs of the Florida Keys, USA, experience milder temperatures and lower nutrient loads in comparison to inshore reefs yet remain considerably more degraded than nearshore patch reefs. A year-long reciprocal transplant experiment of the mustard hill coral (Porites astreoides) involving four source and eight transplant locations reveals that corals adapt and/or acclimatize to their local habitat on a < 10-km scale. Surprisingly, transplantation to putatively similar environmental types (e.g., offshore corals moved to a novel offshore site, or along-shore transplantation) resulted in greater reductions in fitness proxies, such as coral growth, than cross-channel transplantation between inshore and offshore reefs. The only abiotic factor showing significantly greater differences between along-shore sites was daily temperature range extremes (rather than the absolute high or low temperatures reached), providing a possible explanation for this pattern. Offshore-origin corals exhibited significant growth reductions at sites with greater daily temperature ranges, which explained up to 39% of the variation in their mass gain. In contrast, daily temperature range explained at most 9% of growth variation in inshore-origin corals, suggesting that inshore corals are more tolerant of high-frequency temperature fluctuations. Finally, corals incur trade-offs when specializing to their native reef. Across reef locations the coefficient of selection against coral transplants was 0.07 ± 0.02 (mean ± SE). This selection against immigrants could hinder the ability of corals to recolonize devastated reefs, whether through assisted migration efforts or natural recruitment events, providing a unifying explanation for observed patterns of coral decline in this reef system.

Nutrient inputs from the watershed and coastal eutrophication in the Florida Keys

DOE Office of Scientific and Technical Information (OSTI.GOV)

LaPointe, B.E.; Clark, M.W.

1992-12-01

Widespread use of septic tanks in the Florida Keys increase the nutrient concentrations of limestone ground waters that discharge into shallow nearshore waters, resulting in coastal eutrophication. This study characterizes watershed nutrient inputs, transformations, and effects along a land-sea gradient stratified into four ecosystems that occur with increasing distance from land: manmade canal systems, seagrass meadows, patch reefs, and offshore bank reefs. Soluble reactive phosphorus (SRP), the primary limiting nutrient, was significantly elevated in canal systems, while dissolved inorganic nitrogen (DIN; NH[sub 4][sup =] and NO[sub 3][sup [minus

Expanded Florida reef development during the mid-Pliocene warm period

NASA Astrophysics Data System (ADS)

Klaus, James S.; Meeder, John F.; McNeill, Donald F.; Woodhead, Jon F.; Swart, Peter K.

2017-05-01

The coral fauna of the Tamiami Formation documents a northern expansion of reef development along the Florida Peninsula during the mid-Pliocene warm period (MPWP). Radiometric dating (U-Pb) of Solenastrea bournoni produced an age of 2.99 ± 0.11 Ma, constraining reef development to the MPWP and the peak of Plio-Pleistocene faunal turnover; subsequent to the final closure of the Central American Seaway (CAS) but prior to major Northern Hemisphere Glaciation (NHG). Coral faunal analyses are based on a total of 1614 coral specimens collected along a 165 km stretch of the west Florida coast, and included rarefaction and detrended correspondence analysis (DCA). A total of 60 coral species occur within the Tamiami Formation, with faunal assemblages ranging from 42 to 87% extinct taxa. The Tamiami collections can be split into a southern "reef" assemblage with high diversity of stenotopic taxa and a northern "non-reef" assemblage with lower diversity eurytopic taxa. The southern reef assemblage contains framework buildups of the dominant tropical taxa Stylophora affinis, Orbicella annularis, and Acropora cervicornis. We interpret enhanced west Florida reef development during the middle Pliocene to be a product of more equitable sea surface temperatures, and reduced salinity fluctuations associated with higher sea levels. While mean sea surface temperature estimates based on oxygen isotopic analysis of the coral Solenastrea bournoni (25.3 °C) are similar to present day values (26 °C), a completely flooded southern Florida Platform in the Pliocene would be less prone to salinity fluctuations associated with coastal runoff and extreme cold-water events during winter storms. While higher latitude range shifts of tropical reef corals associated with current global climate change have been documented elsewhere in the world, we do not foresee the West Florida Shelf being conducive to significant range shifts in tropical coral taxa or reef development within the coming century.

Cambrian Series 3 carbonate platform of Korea dominated by microbial-sponge reefs

NASA Astrophysics Data System (ADS)

Hong, Jongsun; Lee, Jeong-Hyun; Choh, Suk-Joo; Lee, Dong-Jin

2016-07-01

Metazoans have been considered as negligible components of Cambrian Series 3 and Furongian microbial-dominated reefs, in contrast to their presence in earlier Terreneuvian-Cambrian Series 2 microbial-archaeocyath reefs. However, recent discoveries of sponges in Cambrian Series 3-Furongian reefs of Australia, China, Iran, USA, and Korea have raised question regarding their contribution in terms of carbonate platform development, which have never been assessed. This study examines Cambrian Series 3 deposits of the Daegi Formation, Korea to elucidate this question. The 100-m-thick middle part of the Daegi Formation is dominated by boundstone facies, which occupies 45% of the study interval, as well as bioclastic wackestone to packstone, bioclastic grainstone, and ooid packstone to grainstone facies. The Daegi reefs are primarily thrombolitic in composition, with 90% (n = 26/29) of the reefs containing an average of 9% sponges in aerial percentage calculated from thin sections. Lithistid sponges composed of peloidal fabrics, some desma spicules, and spicule networks commonly occupy the interstitial space in microbial clusters, are encrusted by mesoclots and Epiphyton, and are surrounded by micrite. Subordinate non-lithistid demosponges occur within clusters of microbial elements. The middle Daegi Formation can be largely subdivided into shoal environment dominated by grainstone to packstone facies and shallow subtidal platform interior environment located behind shoal with wackestone to packstone facies. The microbial-sponge reefs mainly developed around platform interior as patch reefs. The current study indicates that metazoans in the form of lithistid and non-lithistid demosponges are nearly ubiquitously incorporated in Daegi reefs and contributed greatly to the formation of microbial-sponge reefs as well as carbonate platform during the time. Study of these microbial-sponge reefs and their distribution within the carbonate platform may help us to understand how carbonate sedimentary environments responded to the extinction of archaeocyaths.

A comparison between boat-based and diver-based methods for quantifying coral bleaching

USGS Publications Warehouse

Zawada, David G.; Ruzicka, Rob; Colella, Michael A.

2015-01-01

Recent increases in both the frequency and severity of coral bleaching events have spurred numerous surveys to quantify the immediate impacts and monitor the subsequent community response. Most of these efforts utilize conventional diver-based methods, which are inherently time-consuming, expensive, and limited in spatial scope unless they deploy large teams of scientifically-trained divers. In this study, we evaluated the effectiveness of the Along-Track Reef Imaging System (ATRIS), an automated image-acquisition technology, for assessing a moderate bleaching event that occurred in the summer of 2011 in the Florida Keys. More than 100,000 images were collected over 2.7 km of transects spanning four patch reefs in a 3-h period. In contrast, divers completed 18, 10-m long transects at nine patch reefs over a 5-day period. Corals were assigned to one of four categories: not bleached, pale, partially bleached, and bleached. The prevalence of bleaching estimated by ATRIS was comparable to the results obtained by divers, but only for corals > 41 cm in size. The coral size-threshold computed for ATRIS in this study was constrained by prevailing environmental conditions (turbidity and sea state) and, consequently, needs to be determined on a study-by-study basis. Both ATRIS and diver-based methods have innate strengths and weaknesses that must be weighed with respect to project goals.

Relative and combined effects of habitat and fishing on reef fish communities across a limited fishing gradient at Ningaloo.

PubMed

Wilson, Shaun K; Babcock, Russ C; Fisher, Rebecca; Holmes, Thomas H; Moore, James A Y; Thomson, Damian P

2012-10-01

Habitat degradation and fishing are major drivers of temporal and spatial changes in fish communities. The independent effects of these drivers are well documented, but the relative importance and interaction between fishing and habitat shifts is poorly understood, particularly in complex systems such as coral reefs. To assess the combined and relative effects of fishing and habitat we examined the composition of fish communities on patch reefs across a gradient of high to low structural complexity in fished and unfished areas of the Ningaloo Marine Park, Western Australia. Biomass and species richness of fish were positively correlated with structural complexity of reefs and negatively related to macroalgal cover. Total abundance of fish was also positively related to structural complexity, however this relationship was stronger on fished reefs than those where fishing is prohibited. The interaction between habitat condition and fishing pressure is primarily due to the high abundance of small bodied planktivorous fish on fished reefs. However, the influence of management zones on the abundance and biomass of predators and target species is small, implying spatial differences in fishing pressure are low and unlikely to be driving this interaction. Our results emphasise the importance of habitat in structuring reef fish communities on coral reefs especially when gradients in fishing pressure are low. The influence of fishing effort on this relationship may however become more important as fishing pressure increases. Copyright © 2012 Elsevier Ltd. All rights reserved.

Habitat degradation negatively affects auditory settlement behavior of coral reef fishes

PubMed Central

Harding, Harry R.; Wong, Kathryn E.; Merchant, Nathan D.; Meekan, Mark G.; Radford, Andrew N.; Simpson, Stephen D.

2018-01-01

Coral reefs are increasingly degraded by climate-induced bleaching and storm damage. Reef recovery relies on recruitment of young fishes for the replenishment of functionally important taxa. Acoustic cues guide the orientation, habitat selection, and settlement of many fishes, but these processes may be impaired if degradation alters reef soundscapes. Here, we report spatiotemporally matched evidence of soundscapes altered by degradation from recordings taken before and after recent severe damage on Australia’s Great Barrier Reef. Postdegradation soundscapes were an average of 15 dB re 1 µPa quieter and had significantly reduced acoustic complexity, richness, and rates of invertebrate snaps compared with their predegradation equivalents. We then used these matched recordings in complementary light-trap and patch-reef experiments to assess responses of wild fish larvae under natural conditions. We show that postdegradation soundscapes were 8% less attractive to presettlement larvae and resulted in 40% less settlement of juvenile fishes than predegradation soundscapes; postdegradation soundscapes were no more attractive than open-ocean sound. However, our experimental design does not allow an estimate of how much attraction and settlement to isolated postdegradation soundscapes might change compared with isolated predegradation soundscapes. Reductions in attraction and settlement were qualitatively similar across and within all trophic guilds and taxonomic groups analyzed. These patterns may lead to declines in fish populations, exacerbating degradation. Acoustic changes might therefore trigger a feedback loop that could impair reef resilience. To understand fully the recovery potential of coral reefs, we must learn to listen. PMID:29712839

Multi-site evaluation of IKONOS data for classification of tropical coral reef environments

USGS Publications Warehouse

Andrefouet, S.; Kramer, Philip; Torres-Pulliza, D.; Joyce, K.E.; Hochberg, E.J.; Garza-Perez, R.; Mumby, P.J.; Riegl, Bernhard; Yamano, H.; White, W.H.; Zubia, M.; Brock, J.C.; Phinn, S.R.; Naseer, A.; Hatcher, B.G.; Muller-Karger, F. E.

2003-01-01

Ten IKONOS images of different coral reef sites distributed around the world were processed to assess the potential of 4-m resolution multispectral data for coral reef habitat mapping. Complexity of reef environments, established by field observation, ranged from 3 to 15 classes of benthic habitats containing various combinations of sediments, carbonate pavement, seagrass, algae, and corals in different geomorphologic zones (forereef, lagoon, patch reef, reef flats). Processing included corrections for sea surface roughness and bathymetry, unsupervised or supervised classification, and accuracy assessment based on ground-truth data. IKONOS classification results were compared with classified Landsat 7 imagery for simple to moderate complexity of reef habitats (5-11 classes). For both sensors, overall accuracies of the classifications show a general linear trend of decreasing accuracy with increasing habitat complexity. The IKONOS sensor performed better, with a 15-20% improvement in accuracy compared to Landsat. For IKONOS, overall accuracy was 77% for 4-5 classes, 71% for 7-8 classes, 65% in 9-11 classes, and 53% for more than 13 classes. The Landsat classification accuracy was systematically lower, with an average of 56% for 5-10 classes. Within this general trend, inter-site comparisons and specificities demonstrate the benefits of different approaches. Pre-segmentation of the different geomorphologic zones and depth correction provided different advantages in different environments. Our results help guide scientists and managers in applying IKONOS-class data for coral reef mapping applications. ?? 2003 Elsevier Inc. All rights reserved.

Late Pleistocene-Holocene coastal development of islands off Vietnam

NASA Astrophysics Data System (ADS)

Korotky, A. M.; Razjigaeva, N. G.; Ganzey, L. A.; Volkov, V. G.; Grebennikova, T. A.; Bazarova, V. B.; Kovalukh, N. N.

Relief and deposits of Vietnam shelf islands (Tkhanlam, Kaoptyaotyai, Koto, Kaotkhaotyai, Dongkho, Fongwong, Timatao Re, Che, Mung, Tyam, Kondao, Baikan, Fukuok, Tkhotyu, Tkhom) were studied. In the Late Pleistocene-Holocene these areas were the islands during transgressions, when the continent was submerged. The islands were connected to the continent during regressions. Coastal relief and deposits indicate the mark of Riss-Wurm and some Middle-Late Holocene transgressions and regressions. Transgressions were recorded in 10, 4-6, 3-4, 2.5-3, 1.5-2 m terraces, elevated benches and elevated coral reefs. Deposits of transgressive phases of Middle-Late Holocene with sea level rises from 0.5 to 3 m were dated: 5060-6800, 3357-4100, 2170-2435, 900-1200 years B.P. Regressions were accompanied by intensive eolian activities, downslope processes and erosional downcut of river valleys.

Living in the Past: Phylogeography and Population Histories of Indo-Pacific Wrasses (Genus Halichoeres) in Shallow Lagoons versus Outer Reef Slopes

PubMed Central

Ludt, William B.; Bernal, Moisés A.; Bowen, Brian W.; Rocha, Luiz A.

2012-01-01

Sea level fluctuations during glacial cycles affect the distribution of shallow marine biota, exposing the continental shelf on a global scale, and displacing coral reef habitat to steep slopes on oceanic islands. In these circumstances we expect that species inhabiting lagoons should show shallow genetic architecture relative to species inhabiting more stable outer reefs. Here we test this expectation on an ocean-basin scale with four wrasses (genus Halichoeres): H. claudia (N = 194, with ocean-wide distribution) and H. ornatissimus (N = 346, a Hawaiian endemic) inhabit seaward reef slopes, whereas H. trimaculatus (N = 239) and H. margaritaceus (N = 118) inhabit lagoons and shallow habitats throughout the Pacific. Two mitochondrial markers (cytochrome oxidase I and control region) were sequenced to resolve population structure and history of each species. Haplotype and nucleotide diversity were similar among all four species. The outer reef species showed significantly less population structure, consistent with longer pelagic larval durations. Mismatch distributions and significant negative Fu’s F values indicate Pleistocene population expansion for all species, and (contrary to expectations) shallower histories in the outer slope species. We conclude that lagoonal wrasses may persist through glacial habitat disruptions, but are restricted to refugia during lower sea level stands. In contrast, outer reef slope species have homogeneous and well-connected populations through their entire ranges regardless of sea level fluctuations. These findings contradict the hypothesis that shallow species are less genetically diverse as a consequence of glacial cycles. PMID:22701597

Modern sediments and Pleistocene reefs from isolated carbonate platforms (Iles Eparses, SW Indian Ocean): A preliminary study

NASA Astrophysics Data System (ADS)

Jorry, Stéphan J.; Camoin, Gilbert F.; Jouet, Gwénaël; Roy, Pascal Le; Vella, Claude; Courgeon, Simon; Prat, Sophie; Fontanier, Christophe; Paumard, Victorien; Boulle, Julien; Caline, Bruno; Borgomano, Jean

2016-04-01

Isolated carbonate platforms occur throughout the geologic record, from Archean to present. Although the respective roles of tectonics, sediment supply and sea-level changes in the stratigraphical architecture of these systems are relatively well constrained, the details of the nature and controls on the variability of sedimentological patterns between and within individual geomorphologic units on platforms have been barely investigated. This study aims at describing and comparing geomorphological and sedimentological features of surficial sediments and fossil reefs from three isolated carbonate platforms located in the SW Indian Ocean (Glorieuses, Juan de Nova and Europa). These carbonate platforms are relatively small and lack continuous reef margins, which have developed only on windward sides. Field observations, petrographic characterization and grain-size analyses are used to illustrate the spatial patterns of sediment accumulation on these platforms. The internal parts of both Glorieuses and Juan de Nova platforms are blanketed by sand dunes with medium to coarse sands with numerous reef pinnacles. Skeletal components including coral, green algae, and benthic foraminifera fragments prevail in these sediments. Europa platform exhibits a similar skeletal assemblage dominated by coral fragments, with the absence of wave-driven sedimentary bodies. Fossil reefs from the Last interglacial (125,000 years BP) occur on the three platforms. At Glorieuses, a succession of drowned terraces detected on seismic lines is interpreted as reflecting the last deglacial sea-level rise initiated 20,000 years ago. These findings highlight the high potential of these platforms to study past sea-level changes and the related reef response, which remain poorly documented in the SW Indian Ocean.

Carbonate sedimentology of Seribu Islands patch reef complex: a literature review

NASA Astrophysics Data System (ADS)

Utami, D. A.; Hakim, A. R.

2018-02-01

Many oil and gas reservoirs in the world are reserved in fossil carbonate sediment. Knowledge of modern carbonate sedimentology is important for a better understanding of ancient carbonate sedimentation. Equatorial coral reefs comprise almost half of the world coral reef production, and yet their dynamics, distributions, and cycles are still not well understood. Contrary to their subtropical counterpart, South East Asian carbonate system is known to be strongly influenced by the combination of oceanographic and climatic conditions. Hence carbonate sediments in the tropics have a distinct depositional system, and ought to be treated differently since common distribution models were developed from the (sub-tropical) Atlantic and Pacific regions. This paper systematically summarizes carbonate sediment studies in Seribu Islands and its dominant oceanographic configuration to provide insights and a sense of research direction in the future.

Persistence and Change in Community Composition of Reef Corals through Present, Past, and Future Climates

PubMed Central

Edmunds, Peter J.; Adjeroud, Mehdi; Baskett, Marissa L.; Baums, Iliana B.; Budd, Ann F.; Carpenter, Robert C.; Fabina, Nicholas S.; Fan, Tung-Yung; Franklin, Erik C.; Gross, Kevin; Han, Xueying; Jacobson, Lianne; Klaus, James S.; McClanahan, Tim R.; O'Leary, Jennifer K.; van Oppen, Madeleine J. H.; Pochon, Xavier; Putnam, Hollie M.; Smith, Tyler B.; Stat, Michael; Sweatman, Hugh; van Woesik, Robert; Gates, Ruth D.

2014-01-01

The reduction in coral cover on many contemporary tropical reefs suggests a different set of coral community assemblages will dominate future reefs. To evaluate the capacity of reef corals to persist over various time scales, we examined coral community dynamics in contemporary, fossil, and simulated future coral reef ecosystems. Based on studies between 1987 and 2012 at two locations in the Caribbean, and between 1981 and 2013 at five locations in the Indo-Pacific, we show that many coral genera declined in abundance, some showed no change in abundance, and a few coral genera increased in abundance. Whether the abundance of a genus declined, increased, or was conserved, was independent of coral family. An analysis of fossil-reef communities in the Caribbean revealed changes in numerical dominance and relative abundances of coral genera, and demonstrated that neither dominance nor taxon was associated with persistence. As coral family was a poor predictor of performance on contemporary reefs, a trait-based, dynamic, multi-patch model was developed to explore the phenotypic basis of ecological performance in a warmer future. Sensitivity analyses revealed that upon exposure to thermal stress, thermal tolerance, growth rate, and longevity were the most important predictors of coral persistence. Together, our results underscore the high variation in the rates and direction of change in coral abundances on contemporary and fossil reefs. Given this variation, it remains possible that coral reefs will be populated by a subset of the present coral fauna in a future that is warmer than the recent past. PMID:25272143

Porosity evolution of upper Miocene reefs, Almeria Province, southern Spain

USGS Publications Warehouse

Armstrong, A.K.; Snavely, P.D.; Addicott, W.O.

1980-01-01

Sea cliffs 40 km east of Almeria, southeastern Spain, expose upper Miocene reefs and patch reefs of the Plomo formation. These reefs are formed of scleractinian corals, calcareous algae, and mollusks. The reef cores are as much as 65 m thick and several hundred meters wide. Fore-reef talus beds extend 1,300 m across and are 40 m thick. The reefs and reef breccias are composed of calcific dolomite. They lie on volcanic rocks that have a K-Ar date of 11.5 m.y. and in turn are overlain by the upper Miocene Vicar Formation. In the reef cores and fore-reef breccia beds, porosity is both primary and postdepositional. Primary porosity is of three types: (a) boring clam holes in the scleractinian coral heads, cemented reef rocks, and breccias; (b) intraparticle porosity within the corals, Halimeda plates, and vermetid worm tubes; and (c) interparticle porosity between bioclastic fragments and in the reef breccia. Postdepositional moldic porosity was formed by the solution of aragonitic material such as molluscan and coral fragments. The Plomo reef carbonate rocks have high porosity and permeability, and retain a great amount of depositional porosity. Pores range in size from a few micrometers to 30 cm. The extensive intercrystalline porosity and high permeability resulted from dolomitization of micritic matrix. Dolomite rhombs are between 10 and 30 μ across. More moldic porosity was formed by the dissolution of the calclte bioclasts. Some porosity reduction has occurred by incomplete and partial sparry calcite infilling of interparticular, moldic, and intercrystalline voids. The high porosity and permeability of these reefs make them important targets for petroleum exploration in the western Mediterranean off southern Spain. In these offshore areas in the subsurface the volcanic ridge and the Plomo reef complex are locally onlapped or overlapped by 350 m or more of Miocene(?) and Pliocene fine-grained sedimentary rocks. The possibility exists that the buried Plomo reef deposits may form traps for oil and gas in the offshore areas southwest of the type locality. Stratigraphic traps also may occur where the Neogene sequence above the Plomo reef complex onlaps the volcanic ridge.

Habitat degradation negatively affects auditory settlement behavior of coral reef fishes.

PubMed

Gordon, Timothy A C; Harding, Harry R; Wong, Kathryn E; Merchant, Nathan D; Meekan, Mark G; McCormick, Mark I; Radford, Andrew N; Simpson, Stephen D

2018-05-15

Coral reefs are increasingly degraded by climate-induced bleaching and storm damage. Reef recovery relies on recruitment of young fishes for the replenishment of functionally important taxa. Acoustic cues guide the orientation, habitat selection, and settlement of many fishes, but these processes may be impaired if degradation alters reef soundscapes. Here, we report spatiotemporally matched evidence of soundscapes altered by degradation from recordings taken before and after recent severe damage on Australia's Great Barrier Reef. Postdegradation soundscapes were an average of 15 dB re 1 µPa quieter and had significantly reduced acoustic complexity, richness, and rates of invertebrate snaps compared with their predegradation equivalents. We then used these matched recordings in complementary light-trap and patch-reef experiments to assess responses of wild fish larvae under natural conditions. We show that postdegradation soundscapes were 8% less attractive to presettlement larvae and resulted in 40% less settlement of juvenile fishes than predegradation soundscapes; postdegradation soundscapes were no more attractive than open-ocean sound. However, our experimental design does not allow an estimate of how much attraction and settlement to isolated postdegradation soundscapes might change compared with isolated predegradation soundscapes. Reductions in attraction and settlement were qualitatively similar across and within all trophic guilds and taxonomic groups analyzed. These patterns may lead to declines in fish populations, exacerbating degradation. Acoustic changes might therefore trigger a feedback loop that could impair reef resilience. To understand fully the recovery potential of coral reefs, we must learn to listen. Copyright © 2018 the Author(s). Published by PNAS.

Neogene reef coral assemblages of the Bocas del Toro region, Panama: the rise of Acropora palmata

NASA Astrophysics Data System (ADS)

Klaus, J. S.; McNeill, D. F.; Budd, A. F.; Coates, A. G.

2012-03-01

Temporal patterns are evaluated in Neogene reef coral assemblages from the Bocas del Toro Basin of Panama in order to understand how reef ecosystems respond to long-term environmental change. Analyses are based on a total of 1,702 zooxanthellate coral specimens collected from six coral-bearing units ranging in age from the earliest Late Miocene to the Early Pleistocene: (1) Valiente Formation (12-11 Ma), (2) Fish Hole Member of the Old Bank Formation (5.8-5.6 Ma), (3) La Gruta Member of the Isla Colon Formation (2.2-1.4 Ma), (4) Ground Creek Member of the Isla Colon Formation (2.2-1.4 Ma), (5) Mimitimbi Member of the Urracá Formation (1.2-0.8 Ma), and (6) Hill Point Member of the Urracá Formation (1.2-0.8 Ma). Over 100 coral species occur in the six units, with faunal assemblages ranging from less than 10% extant taxa (Valiente Formation) to over 85% extant taxa (Ground Creek Member). The collections provide new temporal constraints on the emergence of modern Caribbean reefs, with the La Gruta Member containing the earliest occurrence of large monospecific stands of the dominant Caribbean reef coral Acropora palmata, and the Urracá Formation containing the last fossil occurrences of 15 regionally extinct taxa. Canonical correspondence analysis of 41 Late Miocene to Recent reef coral assemblages from the Caribbean region suggests changes in community structure coincident with effective oceanic closure of the Central American Seaway (~3.5 Ma). These changes, including increased Acropora dominance, may have contributed to a protracted period of elevated extinction debt prior to the major peak in regional coral extinctions (~2-1 Ma).

A Herbivore Knows Its Patch: Luderick, Girella tricuspidata, Exhibit Strong Site Fidelity on Shallow Subtidal Reefs in a Temperate Marine Park

PubMed Central

Ferguson, Adrian M.; Harvey, Euan S.; Taylor, Matthew D.; Knott, Nathan A.

2013-01-01

Understanding movement patterns, habitat use and behaviour of fish is critical to determining how targeted species may respond to protection provided by “no-take” sanctuary zones within marine parks. We assessed the fine and broad scale movement patterns of an exploited herbivore, luderick (Girella tricuspidata), using acoustic telemetry to evaluate how this species may respond to protection within Jervis Bay (New South Wales, Australia). We surgically implanted fourteen fish with acoustic transmitters and actively and passively tracked individuals to determine fine and broad scale movement patterns respectively. Eight fish were actively tracked for 24 h d¯1 for 6 d (May 2011), and then intermittently over the following 30 d. Six fish were passively tracked from December 2011 to March 2012, using a fixed array of receivers deployed across rocky reefs around the perimeter of the bay. Luderick exhibited strong site fidelity on shallow subtidal reefs, tending to remain on or return consistently to the reef where they were caught and released. All eight fish actively tracked used core areas solely on their release reef, with the exception of one fish that used multiple core areas, and four of the six fish passively tracked spent between 75 to 96% of days on release reefs over the entire tracking period. Luderick did move frequently to adjacent reefs, and occasionally to more distant reefs, however consistently returned to their release reef. Luderick also exhibited predictable patterns in movement between spatially distinct daytime and night-time core use areas. Night-time core use areas were generally located in sheltered areas behind the edge of reefs. Overall, our data indicate luderick exhibit strong site fidelity on shallow subtidal reefs in Jervis Bay and suggests that this important herbivore may be likely to show a positive response to protection within the marine park. PMID:23741515

A herbivore knows its patch: luderick, Girella tricuspidata, exhibit strong site fidelity on shallow subtidal reefs in a temperate marine park.

PubMed

Ferguson, Adrian M; Harvey, Euan S; Taylor, Matthew D; Knott, Nathan A

2013-01-01

Understanding movement patterns, habitat use and behaviour of fish is critical to determining how targeted species may respond to protection provided by "no-take" sanctuary zones within marine parks. We assessed the fine and broad scale movement patterns of an exploited herbivore, luderick (Girella tricuspidata), using acoustic telemetry to evaluate how this species may respond to protection within Jervis Bay (New South Wales, Australia). We surgically implanted fourteen fish with acoustic transmitters and actively and passively tracked individuals to determine fine and broad scale movement patterns respectively. Eight fish were actively tracked for 24 h d¯(1) for 6 d (May 2011), and then intermittently over the following 30 d. Six fish were passively tracked from December 2011 to March 2012, using a fixed array of receivers deployed across rocky reefs around the perimeter of the bay. Luderick exhibited strong site fidelity on shallow subtidal reefs, tending to remain on or return consistently to the reef where they were caught and released. All eight fish actively tracked used core areas solely on their release reef, with the exception of one fish that used multiple core areas, and four of the six fish passively tracked spent between 75 to 96% of days on release reefs over the entire tracking period. Luderick did move frequently to adjacent reefs, and occasionally to more distant reefs, however consistently returned to their release reef. Luderick also exhibited predictable patterns in movement between spatially distinct daytime and night-time core use areas. Night-time core use areas were generally located in sheltered areas behind the edge of reefs. Overall, our data indicate luderick exhibit strong site fidelity on shallow subtidal reefs in Jervis Bay and suggests that this important herbivore may be likely to show a positive response to protection within the marine park.

Mapping Mesophotic Reefs Along the Brazilian Continental Margin

NASA Astrophysics Data System (ADS)

Bastos, A.; Moura, R.; Amado Filho, G.; Ferreira, L.; Boni, G.; Vedoato, F.; D'Agostini, D.; Lavagnino, A. C.; Leite, M. D.; Quaresma, V.

2017-12-01

Submerged or drowned reefs constitute an important geological record of sea level variations, forming the substrate for the colonization of modern benthic mesophotic communities. Although mapping mesophotic reefs has increased in the last years, their spatial distribution is poorly known and the worldwide occurrence of this reef habitat maybe underestimated. The importance in recognizing the distribution of mesophotic reefs is that they can act as a refuge for corals during unsuitable environmental conditions and a repository for shallow water corals. Here we present the result of several acoustic surveys that mapped and discovered new mesophotic reefs along the Eastern and Equatorial Brazilian Continental Margin. Seabed mapping was carried out using multibeam and side scan sonars. Ground truthing was obtained using drop camera or scuba diving. Mesophotic reefs were mapped in water depths varying from 30 to 100m and under distinct oceanographic conditions, especially in terms of river load input and shelf width. Reefs showed distinct morphologies, from low relief banks and paleovalleys to shelf edge ridges. Extensive occurrence of low relief banks were mapped along the most important coralline complex province in the South Atlantic, the Abrolhos Shelf. These 30 to 40m deep banks, have no more than 3 meters in height and may represent fringing reefs formed during sea level stabilization. Paleovalleys mapped along the eastern margin showed the occurrence of coralgal ledges along the channel margins. Paleovalleys are usually deeper than 45m and are associated with outer shelf rhodolith beds. Shelf edge ridges (80 to 120m deep) were mapped along both margins and are related to red algal encrusting irregular surfaces that have more than 3m in height, forming a rigid substrate for coral growth. Along the Equatorial Margin, off the Amazon mouth, shelf edge patch reefs and rhodolith beds forming encrusting surfaces and shelf edge ridges were mapped in water depths greater than 100m. Thus, the occurrence of mesophotic reefs along the Brazilian Margin is influenced by transgressive morphological features, which could be used as a surrogate for mesophotic reef distribution. The extensive occurrence of rhodolith beds on the outer shelf characterizes most of these reefs.

Geology and hydrogeology of the Florida Keys

USGS Publications Warehouse

Halley, Robert B.; Vacher, H. L.; Shinn,

1997-01-01

This chapter discusses the geology and hydrogeology of the Florida Keys, and focuses on the islands formed of Pleistocene limestone. These islands, which are crossed when driving from Miami to Key West, are typically regarded as "the Florida Keys." The outstanding and fragile character of ecosystems on and around the Florida Keys has prompted State and Federal efforts to protect and preserve the remaining public portions of the region. The Florida Keys were largely ignored during the sixteenth, seventeenth, and eighteenth centuries, although the waters just offshore provided a major shipping thoroughfare to and from the New World. The Florida Keys are now recognized as one of the great recreational and environmental resources of the United States. The islands are outposts of a laid-back, tropical resort culture that has as its foundation warmth and clear water. A significant part of the attraction is fishing, diving, and boating around the area's coral reefs, which the islands protect. But the reefs were not always so highly valued. The Florida Keys that have protected the reefs for millennia, may now be the source of the agents that may accomplish what Agassiz thought was beyond man's power a century ago.

Book review of Littler DM. Littler MM (2000) Caribbean Reef Plants An Identification Guide to the Reef Plants of the Caribbean, Bahamas, Florida and Gulf of Mexico

NASA Astrophysics Data System (ADS)

Zuschin, M.; Hohenegger, J.; Steininger, F.

2001-09-01

Information on spatial variability and distribution patterns of organisms in coral reef environments is necessary to evaluate the increasing anthropogenic disturbance of marine environments (Richmond 1993; Wilkinson 1993; Dayton 1994). Therefore different types of subtidal, reef-associated hard substrata (reef flats, reef slopes, coral carpets, coral patches, rock grounds), each with different coral associations, were investigated to determine the distribution pattern of molluscs and their life habits (feeding strategies and substrate relations). The molluscs were strongly dominated by taxa with distinct relations to corals, and five assemblages were differentiated. The Dendropoma maxima assemblage on reef flats is a discrete entity, strongly dominated by this encrusting and suspension-feeding gastropod. All other assemblages are arranged along a substrate gradient of changing coral associations and potential molluscan habitats. The Coralliophila neritoidea- Barbatia foliata assemblage depends on the presence of Porites and shows a dominance of gastropods feeding on corals and of bivalves associated with living corals. The Chamoidea- Cerithium spp. assemblage on rock grounds is strongly dominated by encrusting bivalves. The Drupella cornus-Pteriidae assemblage occurs on Millepora- Acropora reef slopes and is strongly dominated by bivalves associated with living corals. The Barbatia setigera- Ctenoides annulata assemblage includes a broad variety of taxa, molluscan life habits and bottom types, but occurs mainly on faviid carpets and is transitional among the other three assemblages. A predicted degradation of coral coverage to rock bottoms due to increasing eutrophication and physical damage in the study area (Riegl and Piller 2000) will result in a loss of coral-associated molluscs in favor of bivalve crevice dwellers in dead coral heads and of encrusters on dead hard substrata.

Refining the timing of the MIS 5e signal, West Caicos, Bristish West Indies:implications for paleoclimatic interpretation of the stratigraphic record

NASA Astrophysics Data System (ADS)

Kerans, C.; Zahm, C.; Bachtel, S.; Hearty, P.; Cheng, H.

2017-12-01

The progressive refinement of the Last Interglacial (LIG) tropical carbonate record has focused attention on the dramatically abrupt and episodic nature of this critical approximate 12 ka time window. From initial carbonate platform flooding at 133 ka to rapid sea level fall and exposure at 118 ka, the majority of present-day Bahamian and Caribbean strata were produced in a remarkably similar pattern extending from Bermuda and the Bahamas through the Cayman Islands, Yucatan, and south to the Dominican Republic. The position of coral reefs and oolitic sands of the LIG to a first order fit the global insolation-driven climate warming signal. Less well accepted/resolved is the existence of two distinct SL peaks with an intervening sea level fall implying a non-orbitally forced climate shift during this broader highstand. West Caicos, a 10 x 5 km leeward island on the Caicos Platform is an excellent example of LIG carbonate stratigraphic complexity. We collected sub-meter-resolution whole-island airborn LIDAR and decimeter-resolution UAV-constructed DEM's of the western and southern coastal outcrops to serve as a base for decimeter-scale mapping of the MIS 11, 7?, 5e, and Holocene units of the island, with particular focus on the continuous 8.4 km west coast outcrop of the MIS 5e. Seventy-five AAR relative age assignments from ooid separates, pinned by 16 U/Th dates from corals coming from MIS stage 11, lower MIS 5e, and upper MIS 5e reefs helped establish the age model for the Pleistocene-Holocene stratigraphy. The lower MIS 5e reef system averages 128 ka with an onset age of 133 ka. Upper MIS 5e corals ranges from 123 ka to 116 ka, bracketing the intra-MIS 5e sea-level fall between to approximately 125 ka. The intra-MIS 5e fall is a distinct erosional unconformity across 5 km of continuous outcrop, truncating the upper 2.5 m of lower 5e reef. The complexity of MIS 5e record on West Caicos and in the Northern Atlantic and Caribbean platforms regionally provides important insights for those using the Pleistocene as a model for older stratigraphic successions and their linked paleoclimatic records.

Geometry of the Paleo-Nueces River Incised-Valley, Corpus Christi Bay, Texas as it Relates to Quaternary Sea Level History

NASA Astrophysics Data System (ADS)

Lugrin, L.; Gulick, S. S.; Goff, J. A.

2012-12-01

CHIRP subbottom seismic data were collected on the 2009 and 2011 Marine Geophysics Field courses at the University of Texas at Austin within the Corpus Christi Bay along the central Texas coast in order to study the geometry of the ancestral Nueces River incised valley and its evolution over Quaternary sea level history. Since the late Pleistocene, the Nueces River valley experienced a gradual infill due to sea level rise, interrupted by two major flooding events that represent periods of rapid sediment influx. These flooding events are recognizable based on abrupt changes in seismic facies. Discontinuous, chaotic fluvial lag deposits present underneath a fairly continuous, stratified, sub-horizontal estuarine coastal plain facies mark what is interpreted to be the Pleistocene/Holocene unconformity. Above the P/H boundary, oyster reefs thrive within the estuary until capped by a strong reflector, marking the second flooding surface that allowed enough incoming sediment to discontinue oyster reef growth. The estuarine deposits within the paleo-Nueces river valley exhibit a landward migration as the Holocene transgression proceeded. As infill continued, the bay-head delta prograded seaward and the flood-tidal delta extended progressively further up the estuary until the central estuarine basin was capped. The earlier flooding events provide strong reflectors that can be linked to the draining of Lake Agassiz around 8.2 k.a.. This event flooded the Gulf of Mexico with freshwater, and interrupted the estuarine infilling of the Nueces paleo-channel. Cores from previous studies have found at least two species of oyster reefs in Corpus Christi Bay: euryhaline species Crassostrea virginica, and Ostrea equestris, a species known to thrive in higher salinity waters. The presence of both species at the flooding boundary suggests the sudden pulse of freshwater mixed with higher salinity oceanic water. The second flooding surface is interpreted to be associated with an increase in freshwater and sediment influx that can be linked to a soil denudation event in central Texas around 4.8 k.a.. At this time, reef growth ceased in Corpus Christi Bay. A sudden flux of freshwater or saltwater would allow one oyster species to flourish over the other; however, no species of oysters can accommodate sudden intense pulses of sediment. Furthermore, around this same time the bayhead delta seaward progradation accelerated.

Ocean Acidification Refugia of the Florida Reef Tract

NASA Astrophysics Data System (ADS)

Manzello, D.; Enochs, I.; Melo, N.; Gledhill, D. K.; Johns, E. M.

2012-12-01

Ocean acidification (OA) is expected to reduce the calcification rates of marine organisms, yet we have little understanding of how OA will manifest within dynamic, real-world systems. Natural CO2, alkalinity, and salinity gradients can significantly alter local carbonate chemistry, and thereby create a range of susceptibility for different ecosystems to OA. As such, there is a need to characterize this natural variability of seawater carbonate chemistry, especially within coastal ecosystems. Since 2009, carbonate chemistry data have been collected on the Florida Reef Tract (FRT). During periods of heightened productivity, there is a net uptake of total CO2 (TCO2) which increases aragonite saturation state (Ωarag) values on inshore patch reefs of the upper FRT. These waters can exhibit greater Ωarag than what has been modeled for the tropical surface ocean during preindustrial times, with mean (± std. error) Ωarag-values in spring = 4.69 (± 0.101). Conversely, Ωarag-values on offshore reefs generally represent oceanic carbonate chemistries consistent with present day tropical surface ocean conditions. This gradient is opposite from what has been reported for other reef environments. We hypothesize this pattern is caused by the photosynthetic uptake of TCO2 mainly by seagrasses and, to a lesser extent, macroalgae in the inshore waters of the FRT. These inshore reef habitats are therefore potential acidification refugia that are defined not only in a spatial sense, but also in time; coinciding with seasonal productivity dynamics. Coral reefs located within or immediately downstream of seagrass beds may find refuge from OA.

Ocean Acidification Refugia of the Florida Reef Tract

PubMed Central

Manzello, Derek P.; Enochs, Ian C.; Melo, Nelson; Gledhill, Dwight K.; Johns, Elizabeth M.

2012-01-01

Ocean acidification (OA) is expected to reduce the calcification rates of marine organisms, yet we have little understanding of how OA will manifest within dynamic, real-world systems. Natural CO2, alkalinity, and salinity gradients can significantly alter local carbonate chemistry, and thereby create a range of susceptibility for different ecosystems to OA. As such, there is a need to characterize this natural variability of seawater carbonate chemistry, especially within coastal ecosystems. Since 2009, carbonate chemistry data have been collected on the Florida Reef Tract (FRT). During periods of heightened productivity, there is a net uptake of total CO2 (TCO2) which increases aragonite saturation state (Ωarag) values on inshore patch reefs of the upper FRT. These waters can exhibit greater Ωarag than what has been modeled for the tropical surface ocean during preindustrial times, with mean (± std. error) Ωarag-values in spring = 4.69 (±0.101). Conversely, Ωarag-values on offshore reefs generally represent oceanic carbonate chemistries consistent with present day tropical surface ocean conditions. This gradient is opposite from what has been reported for other reef environments. We hypothesize this pattern is caused by the photosynthetic uptake of TCO2 mainly by seagrasses and, to a lesser extent, macroalgae in the inshore waters of the FRT. These inshore reef habitats are therefore potential acidification refugia that are defined not only in a spatial sense, but also in time; coinciding with seasonal productivity dynamics. Coral reefs located within or immediately downstream of seagrass beds may find refuge from OA. PMID:22848575

Ocean acidification refugia of the Florida Reef Tract.

PubMed

Manzello, Derek P; Enochs, Ian C; Melo, Nelson; Gledhill, Dwight K; Johns, Elizabeth M

2012-01-01

Ocean acidification (OA) is expected to reduce the calcification rates of marine organisms, yet we have little understanding of how OA will manifest within dynamic, real-world systems. Natural CO(2), alkalinity, and salinity gradients can significantly alter local carbonate chemistry, and thereby create a range of susceptibility for different ecosystems to OA. As such, there is a need to characterize this natural variability of seawater carbonate chemistry, especially within coastal ecosystems. Since 2009, carbonate chemistry data have been collected on the Florida Reef Tract (FRT). During periods of heightened productivity, there is a net uptake of total CO(2) (TCO(2)) which increases aragonite saturation state (Ω(arag)) values on inshore patch reefs of the upper FRT. These waters can exhibit greater Ω(arag) than what has been modeled for the tropical surface ocean during preindustrial times, with mean (± std. error) Ω(arag)-values in spring = 4.69 (±0.101). Conversely, Ω(arag)-values on offshore reefs generally represent oceanic carbonate chemistries consistent with present day tropical surface ocean conditions. This gradient is opposite from what has been reported for other reef environments. We hypothesize this pattern is caused by the photosynthetic uptake of TCO(2) mainly by seagrasses and, to a lesser extent, macroalgae in the inshore waters of the FRT. These inshore reef habitats are therefore potential acidification refugia that are defined not only in a spatial sense, but also in time; coinciding with seasonal productivity dynamics. Coral reefs located within or immediately downstream of seagrass beds may find refuge from OA.

The Açu Reef morphology, distribution, and inter reef sedimentation on the outer shelf of the NE Brazil equatorial margin

NASA Astrophysics Data System (ADS)

do Nascimento Silva, Luzia Liniane; Gomes, Moab Praxedes; Vital, Helenice

2018-05-01

Submerged reefs, referred to as the Açu Reefs, have been newly observed on both sides of the Açu Incised Valley on the northeastern equatorial Brazilian outer shelf. This study aims to understand the roles of shelf physiography, its antecedent morphologies, and its inter reef sedimentation on the different development stages of the biogenic reef during last deglacial sea-level rise. The data sets consist of side-scan sonar imagery, one sparker seismic profile, 76 sediment samples, and underwater photography. Seven backscatter patterns (P1 to P7) were identified and associated with eleven sedimentary carbonate and siliciclastic facies. The inherited relief, the mouth of the paleo incised valley, and the interreef sediment distribution play major controls on the deglacial reef evolution. The reefs occur in a depth-limited 25-55 m water depth range and in a 6 km wide narrow zone of the outer shelf. The reefs crop out in a surface area over 100 km2 and occur as a series of NW-SE preferentially orientated ridges composed of three parallel ridge sets at 45, 35, and 25 m of water depth. The reefs form a series of individual, roughly linear ridges, tens of km in length, acting as barriers in addition to scattered reef mounds or knolls, averaging 4 m in height and grouped in small patches and aggregates. The reefs, currently limited at the transition between the photic and mesophotic zones, are thinly covered by red algae and scattered coral heads and sponges. Taking into account the established sea-level curves from the equatorial Brazilian northeastern shelf / Rochas Atoll and Barbados, the shelf physiography, and the shallow bedrock, the optimal conditions for reef development had to occur during a time interval (11-9 kyr BP) characterized by a slowdown of the outer shelf flooding, immediately following Meltwater Pulse-1B. This 2 kyr short interval provided unique conditions for remarkable reef backstepping into distinct parallel ridge sets. Furthermore, the Açu Reefs have trapped relict siliciclastic sediments within the three sets of reefs, west of the Açu Incised Valley and adjacent coasts. Lines evidence of easterly nearshore currents carried sediments from the old Açu Incised Valley and adjacent coasts. These incipiently drowned reefs influence the water circulation patterns of the modern shelf system, its carbonate sedimentation, and sediment transport. This study provides a new example of reef occurrence which might be more commonly observed on similar equatorial continental shelves.

Quantity, structure, and habitat selection of natural spawning reefs by walleyes in a north temperate lake: A multiscale analysis

USGS Publications Warehouse

Raabe, Joshua K.; Bozek, Michael A.

2012-01-01

Spawning habitat, the cornerstone of self-sustaining, naturally reproducing walleyeSander vitreus populations, has received limited quantitative research. Our goal was to quantitatively describe the structure and quantity of natural walleye spawning habitat and evaluate potential selection of habitat in Big Crooked Lake, Wisconsin. In 2004 and 2005, we located and delineated walleye egg deposition polygons through visual snorkel and scuba surveys. We also delineated recently deposited, adhesive egg patches daily along one spawning reef in 2005. To determine habitat selection, we quantified and compared spawning and lakewide available habitat at different scales. In both years, walleyes used similar spawning habitat, including three geomorphic types: linear shorelines, a point bar, and an island. Walleyes used only 14% of the entire lake shoreline and 39% of the shoreline comprised of gravel (6.4–76.0 mm), cobble (76.1–149.9 mm), or coarser substrates for spawning in 2005, indicating selection of specific spawning habitat. Lakewide, walleyes spawned close to shore (outer egg deposition polygon boundary mean distance = 2.7 m), in shallow water (outer egg deposition polygon boundary mean depth = 0.3 m), and over gravel substrate (percent coverage mean = 64.3) having low embeddedness (mean = 1.30). Our best nearshore (0–13-m) resource selection function predicted an increase in the relative probability of egg deposition with the increasing abundance of gravel, cobble, and rubble (150.0–303.9-mm) substrates and a decrease with increasing distance from shore and water depth (89.9% overall correct classification). Adhesive egg patches confirmed that walleyes actively chose nearshore, shallow-water, and coarse-substrate spawning habitat. The quantitative habitat information and predictive models will assist biologists in developing walleye spawning reef protection strategies and potentially aid in designing and evaluating artificial spawning reefs.

The use of remote sensing and linear wave theory to model local wave energy around Alphonse Atoll, Seychelles

NASA Astrophysics Data System (ADS)

Hamylton, S.

2011-12-01

This paper demonstrates a practical step-wise method for modelling wave energy at the landscape scale using GIS and remote sensing techniques at Alphonse Atoll, Seychelles. Inputs are a map of the benthic surface (seabed) cover, a detailed bathymetric model derived from remotely sensed Compact Airborne Spectrographic Imager (CASI) data and information on regional wave heights. Incident energy at the reef crest around the atoll perimeter is calculated as a function of its deepwater value with wave parameters (significant wave height and period) hindcast in the offshore zone using the WaveWatch III application developed by the National Oceanographic and Atmospheric Administration. Energy modifications are calculated at constant intervals as waves transform over the forereef platform along a series of reef profile transects running into the atoll centre. Factors for shoaling, refraction and frictional attenuation are calculated at each interval for given changes in bathymetry and benthic coverage type and a nominal reduction in absolute energy is incorporated at the reef crest to account for wave breaking. Overall energy estimates are derived for a period of 5 years and related to spatial patterning of reef flat surface cover (sand and seagrass patches).

First description of a Lophelia pertusa reef complex in Atlantic Canada

NASA Astrophysics Data System (ADS)

Buhl-Mortensen, Pål; Gordon, Don C.; Buhl-Mortensen, Lene; Kulka, Dave W.

2017-08-01

For the first time, we describe a cold-water coral reef complex in Atlantic Canada, discovered at the shelf break, in the mouth of the Laurentian Channel. The study is based on underwater video and sidescan sonar. The reef complex covered an area of approximately 490×1300 m, at 280-400 m depth. It consisted of several small mounds (< 3 m high) where the scleractinian Lophelia pertusa occurred as live colonies, dead blocks and skeletal rubble. On the mounds, a total of 67 live colonies occurred within 14 patches at 300-320 m depth. Most of these (67%) were small (< 20 cm high). Dead coral (rubble and blocks), dominated (88% of all coral observations). Extensive signs of damage by bottom-fishing gear were observed: broken and tilted coral colonies, over-turned boulders and lost fishing gear. Fisheries observer data indicated that the reef complex was subjected to heavy otter trawling annually between 1980 and 2000. In June 2004, a 15 km2 conservation area excluding all bottom-fishing was established. Current bottom fisheries outside the closure include otter trawling for redfish and anchored longlines for halibut. Vessel monitoring system data indicate that the closure is generally respected by the fishing industry.

Environmental contamination associated with a marine landfill ('seafill') beside a coral reef.

PubMed

Jones, Ross

2010-11-01

In Bermuda, bulk waste such as scrap metal, cars, etc., and blocks of cement-stabilized incinerator ash (produced from burning garbage) are disposed of in a foreshore reclamation site, i.e., a seafill. Chemical analyses show that seawater leaching out of the dump regularly exceeds water quality guidelines for Zn and Cu, and that the surrounding sediments are enriched in multiple contaminant classes (metals, polycyclic aromatic hydrocarbons, petroleum hydrocarbons, dioxins and furans, polychlorinated biphenyls and an organochlorine pesticide), i.e., there is a halo of contamination. When compared against biological effects-based sediment quality guidelines (SQGs), numerous sediment samples exceeded the low-range values (where biological effects become possible), and for Hg and Zn exceeded the mid-range value (where they become probable). A few metres away from the edge of the 25 acre dump lies a small coral patch reef, proposed here as most contaminated coral reef in the world. Copyright © 2010 Elsevier Ltd. All rights reserved.

Current research on the late Pliocene and Pleistocene deposits north of Homa Mountain, southwestern Kenya.

PubMed

Ditchfield, P; Hicks, J; Plummer, T; Bishop, L C; Potts, R

1999-02-01

The late Pliocene and Pleistocene sediments of the Homa Peninsula in southwestern Kenya are richly fossiliferous, preserve Early Stone Age archaeological traces and provide one of the few paleoanthropological data sets for the region between the branches of the East African Rift Valley. This paper presents preliminary results of our ongoing investigation of late Pliocene and Pleistocene deposits at the localities of Rawi, Kanam East, Kanam Central and Kanjera. While fossils have been collected from the peninsula since 1911, little systematic effort has been made to place them into a broader litho-and chronostratigraphic framework. This project has conclusively demonstrated that fossils occur in good stratigraphic context at all of the study localities and that claims of sediment slumping (Boswell, 1935) have been greatly overstated (Behrensmeyer et al., 1995; Plummer & Potts, 1989). A provisional chronostratigraphic framework based on magneto- and biostratigraphy is presented here. We have revised the Plio-Pleistocene stratigraphy of the Rawi and Kanam gullies to include three formations: the Rawi, Abundu and Kasibos Formations. Based on magneto- and biostratigraphy, these formations are dated between approximately three and one m.y.a. (Gauss Chron-Jaramillo Subchron) (Cande & Kent, 1995). The Apoko Formation unconformably overlies the others and may be middle to late Pleistocene in age. All formations contain rich patches of fossils, and Acheulean artifacts have been surface collected from the Abundu and Kasibos Formations. Deposition of the fossil- and artefact-bearing sediments at Kanjera North began in the early Pleistocene and continued into the middle Pleistocene. Deposition at Kanjera South began over one million years earlier than previously thought, at approximately 2.2 m.y.a., and continued into the Olduvai Subchron (1.770-1.950 m.y.a.; Cande & Kent, 1995). Excavations have recovered Oldowan artefacts in association with well-preserved fossil fauna near the base of the sequence, the oldest archaeological traces yet known from southwestern Kenya.

Evidence of Late Pliocene-Early Pleistocene marine environments in the deep subsurface of the Lihue Basin, Kauai, Hawaii

USGS Publications Warehouse

Izuka, S.K.; Resig, J.M.

2008-01-01

Cuttings recovered from two deep exploratory wells in the Lihue Basin, Kauai, Hawaii, include fossiliferous marine deposits that offer an uncommon opportunity to study paleoenvironments from the deep subsurface in Hawaii and interpret the paleogeography and geologic history of Kauai. These deposits indicate that two marine incursions gave rise to protected shallow-water, low-energy embayments in the southern part of the Lihue Basin in the late Pliocene-early Pleistocene. During the first marine incursion, the embayment was initially zoned, with a variable-salinity environment nearshore and a normal-marine reef environment offshore. The offshore reef environment eventually evolved to a nearshore, variable-salinity environment as the outer part of the embayment shallowed. During the second marine incursion, the embayment had normal-marine to hypersaline conditions, which constitute a significant departure from the variable-salinity environment present during the first marine incursion. Large streams draining the southern Lihue Basin are a likely source of the freshwater that caused the salinity fluctuations evident in the fossils from the first marine incursion. Subsequent volcanic eruptions produced lava flows that buried the embayment and probably diverted much of the stream flow in the southern Lihue Basin northward, to its present point of discharge north of Kalepa Ridge. As a result, the embayment that formed during the second marine incursion received less freshwater, and a normal-marine to hypersaline environment developed. The shallow-water marine deposits, currently buried between 86 m and 185 m below present sea level, have implications for regional tectonics and global eustasy. Copyright ?? 2008, SEPM (Society for Sedimentary Geology).

First documentation of tidal-channel sponge biostromes (upper Pleistocene, southeastern Florida)

USGS Publications Warehouse

Cunningham, K.J.; Rigby, J.K.; Wacker, M.A.; Curran, H.A.

2007-01-01

Sponges are not a common principal component of Cenozoic reefs and are more typically dominant in deep-water and/or cold-water localities. Here we report the discovery of extensive upper Pleistocene shallow-marine, tropical sponge biostromes from the Mami Limestone of southeastern Florida built by a new ceractinomorph demosponge. These upright, barrel- to vase-shaped sponges occur in monospecific aggregations constructed within the tidal channels of an oolitic tidal-bar belt similar to modern examples on the Great Bahama Bank. The biostromes appear to have a ribbon-like geometry, with densely spaced sponges populating a paleochannel along a 3.5 km extent in the most lengthy biostrome. These are very large (as high as 2 m and 1.8 m in diameter), particularly well-preserved calcified sponges with walls as hard as concrete. Quartz grains are the most common particles agglutinated in the structure of the sponge walls. Where exposed, sediment fill between the sponges is commonly a highly burrowed or cross-bedded ooid-bearing grainstone and, locally, quartz sand. It is postulated that the dense, localized distribution of these particular sponges was due to a slight edge over competitors for food or energy supply and space in a stressed environment of tidal-influenced salinity and nutrient changes, strong currents, and frequently shifting submarine sand dunes. To our knowledge, this represents the first documentation of sponge biostromes composed of very large upright sponges within high-energy tidal channels between ooid shoals. The remarkably well-preserved accumulations provide an alternative example of sponge reefs for comparative paleoenvironmental studies. ?? 2007 The Geological Society of America.

Regional stratigraphy and subsurface geology of Cenozoic deposits, Gulf Coastal Plain, south-central United States

USGS Publications Warehouse

Hosman, R.L.

1991-01-01

Although Cenozoic deposits are not uniformly differentiated, interstate correlations of major Paleocene and Eocene units are generally established throughout the area. Younger deposits are not as well differentiated. Some stratigraphic designations made at surface exposures cannot be extended into the sub-surface, and the scarcity of distinct geologic horizons has hampered differentiation on a regional scale. The complexities of facies development in Oligocene and younger coastal deposits preclude the development of extensive recognizable horizons needed for stratigraphic applications. Coastal deposits are a heterogeneous assemblage of deltaic, lagoonal, lacustrine, palustrine, eolian, and fluvial clastic facies and local calcareous reef facies. Even major time boundaries, as between geologic series, are not fully resolved. Surficial Quaternary deposits overlie the truncated subcrops of Tertiary strata and generally are distinguishable, although some contacts between Pleistocene and underlying Pliocene deposits have been a ?lstoncal source of controversy. Glacially related terraces are characteristic of the Pleistocene Epoch, and alluvium of aggrading streams typifies the Holocene. 

Depth as an Organizing Force in Pocillopora damicornis: Intra-Reef Genetic Architecture

PubMed Central

Gorospe, Kelvin D.; Karl, Stephen A.

2015-01-01

Relative to terrestrial plants, and despite similarities in life history characteristics, the potential for corals to exhibit intra-reef local adaptation in the form of genetic differentiation along an environmental gradient has received little attention. The potential for natural selection to act on such small scales is likely increased by the ability of coral larval dispersal and settlement to be influenced by environmental cues. Here, we combine genetic, spatial, and environmental data for a single patch reef in Kāne‘ohe Bay, O‘ahu, Hawai‘i, USA in a landscape genetics framework to uncover environmental drivers of intra-reef genetic structuring. The genetic dataset consists of near-exhaustive sampling (n = 2352) of the coral, Pocillopora damicornis at our study site and six microsatellite genotypes. In addition, three environmental parameters – depth and two depth-independent temperature indices – were collected on a 4 m grid across 85 locations throughout the reef. We use ordinary kriging to spatially interpolate our environmental data and estimate the three environmental parameters for each colony. Partial Mantel tests indicate a significant correlation between genetic relatedness and depth while controlling for space. These results are also supported by multi-model inference. Furthermore, spatial Principle Component Analysis indicates a statistically significant genetic cline along a depth gradient. Binning the genetic dataset based on size-class revealed that the correlation between genetic relatedness and depth was significant for new recruits and increased for larger size classes, suggesting a possible role of larval habitat selection as well as selective mortality in structuring intra-reef genetic diversity. That both pre- and post-recruitment processes may be involved points to the adaptive role of larval habitat selection in increasing adult survival. The conservation importance of uncovering intra-reef patterns of genetic diversity is discussed. PMID:25806798

Molluscan assemblages on coral reefs and associated hard substrata in the northern Red Sea

NASA Astrophysics Data System (ADS)

Zuschin, M.; Hohenegger, J.; Steininger, F.

2001-09-01

Information on spatial variability and distribution patterns of organisms in coral reef environments is necessary to evaluate the increasing anthropogenic disturbance of marine environments (Richmond 1993; Wilkinson 1993; Dayton 1994). Therefore different types of subtidal, reef-associated hard substrata (reef flats, reef slopes, coral carpets, coral patches, rock grounds), each with different coral associations, were investigated to determine the distribution pattern of molluscs and their life habits (feeding strategies and substrate relations). The molluscs were strongly dominated by taxa with distinct relations to corals, and five assemblages were differentiated. The Dendropoma maxima assemblage on reef flats is a discrete entity, strongly dominated by this encrusting and suspension-feeding gastropod. All other assemblages are arranged along a substrate gradient of changing coral associations and potential molluscan habitats. The Coralliophila neritoidea- Barbatia foliata assemblage depends on the presence of Porites and shows a dominance of gastropods feeding on corals and of bivalves associated with living corals. The Chamoidea- Cerithium spp. assemblage on rock grounds is strongly dominated by encrusting bivalves. The Drupella cornus-Pteriidae assemblage occurs on Millepora- Acropora reef slopes and is strongly dominated by bivalves associated with living corals. The Barbatia setigera- Ctenoides annulata assemblage includes a broad variety of taxa, molluscan life habits and bottom types, but occurs mainly on faviid carpets and is transitional among the other three assemblages. A predicted degradation of coral coverage to rock bottoms due to increasing eutrophication and physical damage in the study area (Riegl and Piller 2000) will result in a loss of coral-associated molluscs in favor of bivalve crevice dwellers in dead coral heads and of encrusters on dead hard substrata.

Future reef decalcification under a business-as-usual CO2 emission scenario

PubMed Central

Dove, Sophie G.; Kline, David I.; Pantos, Olga; Angly, Florent E.; Tyson, Gene W.; Hoegh-Guldberg, Ove

2013-01-01

Increasing atmospheric partial pressure of CO2 (pCO2) is a major threat to coral reefs, but some argue that the threat is mitigated by factors such as the variability in the response of coral calcification to acidification, differences in bleaching susceptibility, and the potential for rapid adaptation to anthropogenic warming. However the evidence for these mitigating factors tends to involve experimental studies on corals, as opposed to coral reefs, and rarely includes the influence of multiple variables (e.g., temperature and acidification) within regimes that include diurnal and seasonal variability. Here, we demonstrate that the inclusion of all these factors results in the decalcification of patch-reefs under business-as-usual scenarios and reduced, although positive, calcification under reduced-emission scenarios. Primary productivity was found to remain constant across all scenarios, despite significant bleaching and coral mortality under both future scenarios. Daylight calcification decreased and nocturnal decalcification increased sharply from the preindustrial and control conditions to the future scenarios of low (reduced emissions) and high (business-as-usual) increases in pCO2. These changes coincided with deeply negative carbonate budgets, a shift toward smaller carbonate sediments, and an increase in the abundance of sediment microbes under the business-as-usual emission scenario. Experimental coral reefs demonstrated highest net calcification rates and lowest rates of coral mortality under preindustrial conditions, suggesting that reef processes may not have been able to keep pace with the relatively minor environmental changes that have occurred during the last century. Taken together, our results have serious implications for the future of coral reefs under business-as-usual environmental changes projected for the coming decades and century. PMID:24003127

Archaeal and Bacterial Communities Associated with the Surface Mucus of Caribbean Corals Differ in Their Degree of Host Specificity and Community Turnover Over Reefs.

PubMed

Frade, Pedro R; Roll, Katharina; Bergauer, Kristin; Herndl, Gerhard J

2016-01-01

Comparative studies on the distribution of archaeal versus bacterial communities associated with the surface mucus layer of corals have rarely taken place. It has therefore remained enigmatic whether mucus-associated archaeal and bacterial communities exhibit a similar specificity towards coral hosts and whether they vary in the same fashion over spatial gradients and between reef locations. We used microbial community profiling (terminal-restriction fragment length polymorphism, T-RFLP) and clone library sequencing of the 16S rRNA gene to compare the diversity and community structure of dominant archaeal and bacterial communities associating with the mucus of three common reef-building coral species (Porites astreoides, Siderastrea siderea and Orbicella annularis) over different spatial scales on a Caribbean fringing reef. Sampling locations included three reef sites, three reef patches within each site and two depths. Reference sediment samples and ambient water were also taken for each of the 18 sampling locations resulting in a total of 239 samples. While only 41% of the bacterial operational taxonomic units (OTUs) characterized by T-RFLP were shared between mucus and the ambient water or sediment, for archaeal OTUs this percentage was 2-fold higher (78%). About half of the mucus-associated OTUs (44% and 58% of bacterial and archaeal OTUs, respectively) were shared between the three coral species. Our multivariate statistical analysis (ANOSIM, PERMANOVA and CCA) showed that while the bacterial community composition was determined by habitat (mucus, sediment or seawater), host coral species, location and spatial distance, the archaeal community composition was solely determined by the habitat. This study highlights that mucus-associated archaeal and bacterial communities differ in their degree of community turnover over reefs and in their host-specificity.

Future reef decalcification under a business-as-usual CO2 emission scenario.

PubMed

Dove, Sophie G; Kline, David I; Pantos, Olga; Angly, Florent E; Tyson, Gene W; Hoegh-Guldberg, Ove

2013-09-17

Increasing atmospheric partial pressure of CO2 (pCO2) is a major threat to coral reefs, but some argue that the threat is mitigated by factors such as the variability in the response of coral calcification to acidification, differences in bleaching susceptibility, and the potential for rapid adaptation to anthropogenic warming. However the evidence for these mitigating factors tends to involve experimental studies on corals, as opposed to coral reefs, and rarely includes the influence of multiple variables (e.g., temperature and acidification) within regimes that include diurnal and seasonal variability. Here, we demonstrate that the inclusion of all these factors results in the decalcification of patch-reefs under business-as-usual scenarios and reduced, although positive, calcification under reduced-emission scenarios. Primary productivity was found to remain constant across all scenarios, despite significant bleaching and coral mortality under both future scenarios. Daylight calcification decreased and nocturnal decalcification increased sharply from the preindustrial and control conditions to the future scenarios of low (reduced emissions) and high (business-as-usual) increases in pCO2. These changes coincided with deeply negative carbonate budgets, a shift toward smaller carbonate sediments, and an increase in the abundance of sediment microbes under the business-as-usual emission scenario. Experimental coral reefs demonstrated highest net calcification rates and lowest rates of coral mortality under preindustrial conditions, suggesting that reef processes may not have been able to keep pace with the relatively minor environmental changes that have occurred during the last century. Taken together, our results have serious implications for the future of coral reefs under business-as-usual environmental changes projected for the coming decades and century.

Taphonomy of coral reefs from Southern Lagoon of Belize

DOE Office of Scientific and Technical Information (OSTI.GOV)

Westphall, M.J.; Ginsburg, R.N.

1985-02-01

The Southern Lagoon of the Belize barrier complex, an area of some 600 km/sup 2/, contains a tremendous number of lagoon reefs, which range in size from patches several meters across to rhomboidal-shaped structures several kilometers in their long dimension. These lagoon reefs are remarkable because they have Holocene sediment accumulations in excess of 13 m consisting almost entirely of coral debris and lime mud and sand, and rise up to 30 m above the surrounding lagoon floor with steeply sloping sides (50-80/sup 0/), yet are totally uncemented. The reef-building biota and their corresponding deposits were studied at a representativemore » reef, the rhomboidal complex of Channel Cay. As with many of the reefs in this area, the steeply sloping flanks of Channel Cay are covered mainly by the branched staghorn coral Acropora cervicornis and ribbonlike and platy growth of Agaricia spp. The living corals are not cemented to the substrate, but are merely intergrown. Fragmented pieces of corals accumulate with an open framework below the living community; this open framework is subsequently infilled by lime muds and sands produced mainly from bioerosion. Results from probing and coring suggest that the bafflestone fabric of coral debris and sediment extends at least 13 m into the subsurface. Radiocarbon-age estimates indicate these impressive piles of coral rubble and sediment have accumulated in the past 9000 yr (giving a minimum accumulation rate of 1.4 m/1000 yr) and illustrate the potential for significant carbonate buildups without the need for early lithification.« less

Incorporating seascape connectivity in conservation prioritisation.

PubMed

Weeks, Rebecca

2017-01-01

In conservation prioritisation, it is often implicit that representation targets for individual habitat types act as surrogates for the species that inhabit them. Yet for many commercially and ecologically important coral reef fish species, connectivity among different habitats in a seascape may be more important than any single habitat alone. Approaches to conservation prioritisation that consider seascape connectivity are thus warranted. I demonstrate an approach that can be implemented within a relatively data-poor context, using widely available conservation planning software. Based on clearly stated assumptions regarding species' habitat usage and movement ability, this approach can be adapted to different focal species and contexts, or refined as further data become available. I first derive a seascape connectivity metric based on area-weighted proximity between juvenile and adult habitat patches, and then apply this during spatial prioritisation using the decision-support software Marxan. Using a case study from Micronesia, I present two applications: first, to inform prioritisation for a network of marine protected areas to achieve regional objectives for habitat representation; and second, to identify nursery habitat patches that are most likely to supply juveniles to adult populations on reefs within existing protected areas. Incorporating seascape connectivity in conservation prioritisation highlights areas where small marine protected areas placed on coral reefs might benefit from proximity to other habitats in the seascape, and thus be more effective. Within the context of community tenure over resources, identification of critical nursery habitats to improve the effectiveness of existing marine protected areas indicates where collaboration across community boundaries might be required. Outputs from these analyses are likely to be most useful in regions where management is highly decentralised, imposing spatial constraints on the size of individual protected areas.

Incorporating seascape connectivity in conservation prioritisation

PubMed Central

2017-01-01

In conservation prioritisation, it is often implicit that representation targets for individual habitat types act as surrogates for the species that inhabit them. Yet for many commercially and ecologically important coral reef fish species, connectivity among different habitats in a seascape may be more important than any single habitat alone. Approaches to conservation prioritisation that consider seascape connectivity are thus warranted. I demonstrate an approach that can be implemented within a relatively data-poor context, using widely available conservation planning software. Based on clearly stated assumptions regarding species’ habitat usage and movement ability, this approach can be adapted to different focal species and contexts, or refined as further data become available. I first derive a seascape connectivity metric based on area-weighted proximity between juvenile and adult habitat patches, and then apply this during spatial prioritisation using the decision-support software Marxan. Using a case study from Micronesia, I present two applications: first, to inform prioritisation for a network of marine protected areas to achieve regional objectives for habitat representation; and second, to identify nursery habitat patches that are most likely to supply juveniles to adult populations on reefs within existing protected areas. Incorporating seascape connectivity in conservation prioritisation highlights areas where small marine protected areas placed on coral reefs might benefit from proximity to other habitats in the seascape, and thus be more effective. Within the context of community tenure over resources, identification of critical nursery habitats to improve the effectiveness of existing marine protected areas indicates where collaboration across community boundaries might be required. Outputs from these analyses are likely to be most useful in regions where management is highly decentralised, imposing spatial constraints on the size of individual protected areas. PMID:28753647

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tribble, G.W.; Sansone, F.J.; Li, Yuan-Hui

Hydraulic exchange between overlying sea water and the internal structure of a patch reef in Kaneohe Bay, Oahu, Hawaii, was studied with an array of wells, 1, 2, and 4 m deep. Two natural chemical tracers, radon, and salinity, were used to calculate the exchange rate between surface sea water and reef interstitial waters. Dissolved radon concentrations are substantially higher in interstitial waters than is surface water. The degree of radon enrichment is quantitatively related to the time elapsed since interstitial water had equilibrated with the atmosphere. Residence time estimates are 1-40 days, with deeper wells having slower exchange. Themore » average residence time for 1-m-deep wells was 2.1 days. A rainstorm-induced dilution of the salinity of Kaneohe Bay provides the second tracer. Samples of surface and reef interstitial waters following this salinity perturbation are used to calculate an average residence time of 2.6 days at a depth of 1 m and 42 days at a depth of 2 m. Three types of physical forces thought to cause exchange between surface and interstitial water are considered by measurement of the forcing functions and reef permeability. Hydraulic conductivities are about 50 m/d, with lower values near the seaward side of the reef. Most exchange seems to be caused by high-frequency, wave-driven oscillatory pumping and by unidirectional hydraulic head gradients (of uncertain origin) that are stable for at least 3-4 days. Wave-driven mixing is probably more important shallower in the reef, whereas head-driven flow may dominate deeper in the reef. Tidal pumping does not seem to contribute to exchange. All methods indicate that exchange in the upper part of Checker Reef is primarily through vertical exchange. The best estimate for the residence time of water at a depth of 1 m is 2 days. Water at depths of 204 m probably has a residence time of weeks to months. 49 refs., 8 figs., 6 tabs.« less

Subsurface Permian reef complexes of southern Tunisia: Shelf carbonate setting and paleogeographic implications

NASA Astrophysics Data System (ADS)

Zaafouri, Adel; Haddad, Sofiene; Mannaî-Tayech, Beya

2017-05-01

2-D seismic reflection sections, borehole data as well as published and unpublished data have been investigated to reconstruct the paleogeography of southern Tunisia during Middle to Late Permian times. Paleogeographical reconstruction based on the integration of petroleum well data and 2-D seismic facies interpretation shows three main depositional areas with very contrasting sedimentary pile. These are 1) a subsiding basin; 2) an outer shelf carbonate, and 3) an inner shelf carbonate. Based on typical electric responses of reef buildups to seismic wave, we shall urge that during Middle Permian times, the outer carbonate shelf was subject of reef barrier development. Lithology evidences from core samples show that reef framework correspond mainly to fossiliferous limestone and dolomite. The WNW-ESE recognized reef barrier led between latitudes 33° 10‧ 00″N and 33° 20‧ 00″N. The Tebaga of Medenine outcrop constitutes the northern-edge of this barrier. Westward it may be extended to Bir Soltane area whereas its extension eastward is still to be determined. Biogenic buildups took place preferentially over faulted Carboniferous and lower Paleozoic paleohighs resulting likely from the Hercynian orogeny. The subsiding basin is located north of Tebaga of Medenine outcrop where Upper Permian sedimentary sequence is made entirely of 4000 m deep marine green silty shale facies. These are ascribed to unorganized and chaotic reflectors. Inner carbonate shelf facies succession corresponds to a typical interbedding of shallow marine carbonate deposits, shale, dolomite, and anhydrite inducing parallel-layered of strong amplitude and good continuity reflectors. Also within the inner carbonate shelf patch reef or reef pinnacles have been identified based on their seismic signature particularly their low vertical development as compared to reef complexes. Southward, towards Sidi Toui area, the Upper Permian depositional sequence thins out and bears witness of land influences as entailed by the increase of silicoclastic sedimentary supply and the lack of marine fossil.

Oligocene and Early Miocene coral faunas from Iran: palaeoecology and palaeobiogeography

NASA Astrophysics Data System (ADS)

Schuster, F.; Wielandt, U.

Oligocene and Early Miocene coral assemblages from three sections of central Iran are investigated with respect to their palaeoecological and palaeobiogeographic implications. These corals are compared with faunas from the Mediterranean Tethys and the Indopacific. Associated larger foraminifers are used for biostratigraphy and to support the palaeoecological interpretation. The studied sections are situated in the foreland basins of the Iranian Plate which is structured into a fore-arc and a back-arc basin separated by a volcanic arc. The coral assemblages from Abadeh indicate a shallowing-upward trend. Infrequently distributed solitary corals at the base of the section indicate a turbid environment. Above, a distinct horizon characterised by a Leptoseris-Stylophora assemblage associated with lepidocyclinids and planktonic foraminifers is interpreted as maximum flooding surface. Small patch reefs with a Porites-Faviidae assemblage are a common feature of Late Oligocene to Early Miocene coral occurrences and indicate water depths of less than 20m. The diversity of the coral faunas shows marked differences. Oligocene corals from the Esfahan-Sirjan fore-arc basin comprise more than 45 species of 32 genera and occur in a wide range of environments. Early Miocene corals from the Qom back-arc basin are less frequent, show a lower diversity (13 genera with 15 species) and occur in single horizons or small patch reefs.

A century of ocean warming on Florida Keys coral reefs: historic in situ observations

USGS Publications Warehouse

Kuffner, Ilsa B.; Lidz, Barbara H.; Hudson, J. Harold; Anderson, Jeffery S.

2015-01-01

There is strong evidence that global climate change over the last several decades has caused shifts in species distributions, species extinctions, and alterations in the functioning of ecosystems. However, because of high variability on short (i.e., diurnal, seasonal, and annual) timescales as well as the recency of a comprehensive instrumental record, it is difficult to detect or provide evidence for long-term, site-specific trends in ocean temperature. Here we analyze five in situ datasets from Florida Keys coral reef habitats, including historic measurements taken by lighthouse keepers, to provide three independent lines of evidence supporting approximately 0.8 °C of warming in sea surface temperature (SST) over the last century. Results indicate that the warming observed in the records between 1878 and 2012 can be fully accounted for by the warming observed in recent decades (from 1975 to 2007), documented using in situ thermographs on a mid-shore patch reef. The magnitude of warming revealed here is similar to that found in other SST datasets from the region and to that observed in global mean surface temperature. The geologic context and significance of recent ocean warming to coral growth and population dynamics are discussed, as is the future prognosis for the Florida reef tract.

Growth history and intrinsic factors influence risk assessment at a critical life transition for a fish

NASA Astrophysics Data System (ADS)

Lönnstedt, O. M.; McCormick, M. I.

2011-09-01

Making the appropriate decision in the face of predation risk dictates the fate of prey, and predation risk is highest at life history boundaries such as settlement. At the end of the larval phase, most coral reef fishes enter patches of reef containing novel predators. Since vision is often obscured in the complex surroundings, chemical information released from damaged conspecific is used to forewarn prey of an active predator. However, larvae enter the reef environment with their own feeding and growth histories, which will influence their motivation to feed and take risks. The present study explored the link between recent growth, feeding history, current performance and behavioural risk taking in newly settling stages of a coral reef damselfish ( Pomacentrus amboinensis). Older and larger juveniles in good body condition had a stronger response to chemical alarm cues of injured conspecifics; these fish spent a longer time in shelter and displayed a more dramatic decrease in foraging behaviour than fish in lower body condition. Feeding experiments supported these findings and emphasized the importance of body condition in affecting risk assessment. Evidently, larval growth history and body condition influences the likelihood of taking risks under the threat of predation immediately after settlement, thereby affecting the probability of survival in P. amboinensis.

Understanding the murky history of the Coral Triangle: Miocene corals and reef habitats in East Kalimantan (Indonesia)

NASA Astrophysics Data System (ADS)

Santodomingo, Nadiezhda; Renema, Willem; Johnson, Kenneth G.

2016-09-01

Studies on ancient coral communities living in marginal conditions, including low light, high turbidity, extreme temperatures, or high nutrients, are important to understand the current structure of reefs and how they could potentially respond to global changes. The main goal of this study was to document the rich and well-preserved fossil coral fauna preserved in Miocene exposures of the Kutai Basin in East Kalimantan, Indonesia. Our collections include almost forty thousand specimens collected from 47 outcrops. Seventy-nine genera and 234 species have been identified. Three different coral assemblages were found corresponding to small patch reefs that developed under the influence of high siliciclastic inputs from the Mahakam Delta. Coral assemblages vary in richness, structure, and composition. Platy coral assemblages were common until the Serravallian (Middle Miocene), while branching coral assemblages became dominant in the Tortonian (Late Miocene). By the late Tortonian massive coral assemblages dominated, similar to modern-style coral framework. Our results suggest that challenging habitats, such as the Miocene turbid habitats of East Kalimantan, might have played an important role during the early diversification of the Coral Triangle by hosting a pool of resilient species more likely to survive the environmental changes that have affected this region since the Cenozoic. Further research that integrates fossil and recent turbid habitats may provide a glimpse into the dynamics and future of coral reefs as "typical" clear-water reefs continue to decline in most regions.

Aragonite saturation states and nutrient fluxes in coral reef sediments in Biscayne National Park, FL, USA

USGS Publications Warehouse

Lisle, John T.; Reich, Christopher D.; Halley, Robert B.

2014-01-01

Some coral reefs, such as patch reefs along the Florida Keys reef tract, are not showing significant reductions in calcification rates in response to ocean acidification. It has been hypothesized that this recalcitrance is due to local buffering effects from biogeochemical processes driven by seagrasses. We investigated the influence that pore water nutrients, dissolved inorganic carbon (DIC) and total alkalinity (TA) have on aragonite saturation states (Ωaragonite) in the sediments and waters overlying the sediment surfaces of sand halos and seagrass beds that encircle Alinas and Anniversary reefs in Biscayne National Park. Throughout the sampling period, sediment pore waters from both bottom types had lower oxidation/reduction potentials (ORP), with lower pH relative to the sediment surface waters. The majority (86.5%) of flux rates (n = 96) for ΣNOx–, PO43–, NH4+, SiO2, DIC and TA were positive, sometimes contributing significant concentrations of the respective constituents to the sediment surface waters. The Ωaragonite values in the pore waters (range: 0.18 to 4.78) were always lower than those in the overlying waters (2.40 to 4.46), and 52% (n = 48) of the values were aragonite in 75% (n = 16) of the samples, but increased it in the remainder. The elevated fluxes of nutrients, DIC and TA into the sediment–water interface layer negatively alters the suitability of this zone for the settlement and development of calcifying larvae, while enhancing the establishment of algal communities.

Identification and prevalence of coral diseases on three Western Indian Ocean coral reefs.

PubMed

Séré, Mathieu G; Chabanet, Pascale; Turquet, Jean; Quod, Jean-Pascal; Schleyer, Michael H

2015-06-03

Coral diseases have caused a substantial decline in the biodiversity and abundance of reef-building corals. To date, more than 30 distinct diseases of scleractinian corals have been reported, which cause progressive tissue loss and/or affect coral growth, reproductive capacity, recruitment, species diversity and the abundance of reef-associated organisms. While coral disease research has increased over the last 4 decades, very little is known about coral diseases in the Western Indian Ocean. Surveys conducted at multiple sites in Reunion, South Africa and Mayotte between August 2010 and June 2012 revealed the presence of 6 main coral diseases: black band disease (BBD), white syndrome (WS), pink line syndrome (PLS), growth anomalies (GA), skeleton eroding band (SEB) and Porites white patch syndrome (PWPS). Overall, disease prevalence was higher in Reunion (7.5 ± 2.2%; mean ± SE) compared to South Africa (3.9 ± 0.8%) and Mayotte (2.7 ± 0.3%). Across locations, Acropora and Porites were the genera most susceptible to disease. Spatial variability was detected in both Reunion and South Africa, with BBD and WS more prevalent on shallow than deep reefs. There was also evidence of seasonality in 2 diseases: the prevalence of BBD and WS was higher in summer than winter. This was the first study to investigate the ecology of coral diseases, providing both qualitative and quantitative data, on Western Indian Ocean reefs, and surveys should be expanded to confirm these patterns.

Petrography, diagenesis, and reservoir properties of Miocene Reefs, Visayan Islands, Philippines

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carozzi, A.V.

1988-01-01

The Miocene reefs of the volcanic island arcs making up the Visayan Islands, Philippines, consist of an association of corals, red algae, bryozoans, and encrusting foraminifers forming barriers along the edge of narrow shelves. Bioclasts and intraclasts derived from these wave-resistant barriers were shed as frontal aprons of calcirudites and calcarenites that sometimes support pinnacle coralling buildups. These aprons were intersected by tidal-channel calcarenites grading seaward into carbonate turbidite submarine fans that interfingered with deep-water pelagic argillaceous micrites and shales. Lagoons with low energy micritic and pelletoidal muds. although intersected by numerous well-sorted tidal channel calcarenites, displayed an ecologically zonedmore » succession of small buildups that, in a landward direction, were: (1) finger-coral constructed; (2) larger, benthic foraminifer bioaccumulated; (3) small arenaceous foraminifer, gastropod, and red algae bioaccumulated. The shoreface environment consisted of mixed carbonates and andesitic grkaywackes grading landward into mangrove tidal flats and estuaries. Reservoirs were mainly developed in constructed barriers and in immediately adjacent frontal aprons and rear bioclastic carbonates. Many of these high-energy carbonates show interstitial micritic matrix. Porosity (reaching 30%) and permeability (reaching 146 md) result from a locally variable combination of the effects of subaerial exposure introducing secondary porosity by vadose to upper phreatic undersaturated dissolution,followed by extensive burial dissolution. Seals are provided between superposed barriers by andesitic volcaniclastics and basaltic flows. Uplifted Pleistocene reefs of Barbados, West Indies, which are nearly identical to Holocene West Indian reefs are excellent analogs of the Miocene examples except for the lack of active volcanism.« less

Habitat complexity and fish size affect the detection of Indo-Pacific lionfish on invaded coral reefs

NASA Astrophysics Data System (ADS)

Green, S. J.; Tamburello, N.; Miller, S. E.; Akins, J. L.; Côté, I. M.

2013-06-01

A standard approach to improving the accuracy of reef fish population estimates derived from underwater visual censuses (UVCs) is the application of species-specific correction factors, which assumes that a species' detectability is constant under all conditions. To test this assumption, we quantified detection rates for invasive Indo-Pacific lionfish ( Pterois volitans and P. miles), which are now a primary threat to coral reef conservation throughout the Caribbean. Estimates of lionfish population density and distribution, which are essential for managing the invasion, are currently obtained through standard UVCs. Using two conventional UVC methods, the belt transect and stationary visual census (SVC), we assessed how lionfish detection rates vary with lionfish body size and habitat complexity (measured as rugosity) on invaded continuous and patch reefs off Cape Eleuthera, the Bahamas. Belt transect and SVC surveys performed equally poorly, with both methods failing to detect the presence of lionfish in >50 % of surveys where thorough, lionfish-focussed searches yielded one or more individuals. Conventional methods underestimated lionfish biomass by ~200 %. Crucially, detection rate varied significantly with both lionfish size and reef rugosity, indicating that the application of a single correction factor across habitats and stages of invasion is unlikely to accurately characterize local populations. Applying variable correction factors that account for site-specific lionfish size and rugosity to conventional survey data increased estimates of lionfish biomass, but these remained significantly lower than actual biomass. To increase the accuracy and reliability of estimates of lionfish density and distribution, monitoring programs should use detailed area searches rather than standard visual survey methods. Our study highlights the importance of accounting for sources of spatial and temporal variation in detection to increase the accuracy of survey data from coral reef systems.

Coral distribution patterns in Miocene Reefs of Anguilla, Leeward Islands, West Indies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Foster, A.B.; Johnson, K.G.

1988-01-01

Anguilla, a 27 by 5 km island at 18/sup 0/13'N, 63/sup 0/05'W, parallels the northwest edge of the Anguilla bank (St. Martin plateau) in the outer lesser Angilles volcanic arc, which was active from the Eocene to Oligocene. Except for scattered exposures of tuff or basalt, the island is composed predominantly of reefal limestones and marls of the 70-m thick, middle Miocene Anguilla Formation, deposited on a shallow inner shelf platform extending from volcanoes near St. Martin. The reef framework consists of branched and platy corals interspersed with calcareous sand lenses. Although the limestones have been uplifted and subjected tomore » minor faulting, little evidence supports extensive transport across a slope. Coral distribution patterns have been quantified across the reefal units by point-counting species occurrences at 0.16-m intervals within 1-m/sup 2/ quadrants placed haphazardly across vertical exposures. Eight coral species (of possibly 18 total) were recorded. Cluster analysis delineated four facies: (1) a low-diversity facies dominated by branched Porites, (2) an intermediate diversity facies dominated by branched Porites, (3) a high-diversity facies dominated by massive Montastraea, Siderastrea, and Porites, and (4) an intermediate diversity facies dominated by platy Porites. These facies consists of lenses, no more than 100 m long and 2 m high, arranged in no apparent regular sequence. Thus, they do not represent zones across a depth gradient. Comparisons with living Caribbean reefs suggests that the Anguilla Miocene reefs were similar to small, modern, backreef fringing and patch reefs near the San Blas Islands of Panama, reefs whose variable composition and patchy distribution depend largely on sedimentation and current patterns.« less

Reduced Diversity and High Sponge Abundance on a Sedimented Indo-Pacific Reef System: Implications for Future Changes in Environmental Quality

PubMed Central

Powell, Abigail; Smith, David J.; Hepburn, Leanne J.; Jones, Timothy; Berman, Jade; Jompa, Jamaluddin; Bell, James J.

2014-01-01

Although coral reef health across the globe is declining as a result of anthropogenic impacts, relatively little is known of how environmental variability influences reef organisms other than corals and fish. Sponges are an important component of coral reef fauna that perform many important functional roles and changes in their abundance and diversity as a result of environmental change has the potential to affect overall reef ecosystem functioning. In this study, we examined patterns of sponge biodiversity and abundance across a range of environments to assess the potential key drivers of differences in benthic community structure. We found that sponge assemblages were significantly different across the study sites, but were dominated by one species Lamellodysidea herbacea (42% of all sponges patches recorded) and that the differential rate of sediment deposition was the most important variable driving differences in abundance patterns. Lamellodysidea herbacea abundance was positively associated with sedimentation rates, while total sponge abundance excluding Lamellodysidea herbacea was negatively associated with rates of sedimentation. Overall variation in sponge assemblage composition was correlated with a number of variables although each variable explained only a small amount of the overall variation. Although sponge abundance remained similar across environments, diversity was negatively affected by sedimentation, with the most sedimented sites being dominated by a single sponge species. Our study shows how some sponge species are able to tolerate high levels of sediment and that any transition of coral reefs to more sedimented states may result in a shift to a low diversity sponge dominated system, which is likely to have subsequent effects on ecosystem functioning. PMID:24475041

Upwellings mitigated Plio-Pleistocene heat stress for reef corals on the Florida platform (USA)

NASA Astrophysics Data System (ADS)

Brachert, Thomas C.; Reuter, Markus; Krüger, Stefan; Kirkerowicz, Julia; Klaus, James S.

2016-03-01

The fast growing calcareous skeletons of zooxanthellate reef corals (z corals) represent unique environmental proxy archives through their oxygen and carbon stable isotope composition (δ18O, δ13C). In addition, the accretion of the skeleton itself is ultimately linked to the environment and responds with variable growth rates (extension rate) and density to environmental changes. Here we present classical proxy data (δ18O, δ13C) in combination with calcification records from 15 massive z corals. The z corals were sampled from four interglacial units of the Florida carbonate platform (USA) dated approximately 3.2, 2.9, 1.8 and 1.2 Ma (middle Pliocene to early Pleistocene). The z corals (Solenastrea, Orbicella, Porites) derive from unlithified shallow marine carbonates and were carefully screened for primary preservation suited for proxy analysis. We show that skeletal accretion responded with decreasing overall calcification rates (decreasing extension rate but increasing density) to warmer water temperatures. Under high annual water temperatures, inferred from sub-annually resolved δ18O data, skeletal bulk density was high, but extension rates and overall calcification rates were at a minimum (endmember scenario 1). Maximum skeletal density was reached during the summer season giving rise to a growth band of high density within the annually banded skeletons ("high density band", HDB). With low mean annual water temperatures (endmember scenario 2), bulk skeletal density was low but extension rates and calcification rates reached a maximum, and under these conditions the HDB formed during winter. Although surface water temperatures in the Western Atlantic warm pool during the interglacials of the late Neogene were ˜ 2 °C higher than they are in the present day, intermittent upwelling of cool, nutrient-rich water mitigated water temperatures off south-western Florida and created temporary refuges for z coral growth. Based on the sub-annually resolved δ18O and δ13C records, the duration of the upwelling episodes causing the endmember 2 conditions was variable and lasted from a few years to a number of decades. The episodes of upwelling were interrupted by phases without upwelling (endmember 1) which lasted for at least a few years and led to high surface water temperatures. This variable environment is likely one of the reasons why the coral fauna is dominated by the eurytopic genus Solenastrea, also a genus resistant to high turbidity. Over a period of ˜ 50 years, the oldest sub annually resolved proxy record available (3.2 Ma) documents a persistent occurrence of the HDB during winter. In contrast, the HDB forms in summer in modern z corals from the Florida reef tract. We suggest this difference should be tested as being the expression of a tendency towards decreasing interglacial upwelling since the middle Pliocene. The number of z coral sclerochronological records for the Plio-Pleistocene is still rather low, however, and requires more data and an improved resolution, through records from additional time slices. Nonetheless, our calcification data from the warm periods of past interglacials may contribute to predicting the effects of future ocean warming on z coral health along the Florida reef tract. The inconsistent timing of the HDB within single coral records or among specimens and time slices is unexpected and contrasts the common practice of establishing chronologies on the basis of the density banding.

Holocene Activity of the Enriquillo-Plantain Garden Fault in Lake Enriquillo Derived from Seismic Stratigraphy

NASA Astrophysics Data System (ADS)

Rios, J. K.; McHugh, C. M.; Hornbach, M. J.; Mann, P.; Wright, V. D.; Gurung, D.

2013-12-01

The Enriquillo-Plantain-Garden fault zone (EPGF) crosses Lake Enriquillo (LE) in the Dominican Republic and extends E-W across the southern peninsula of Haiti, south of the Baie de Port au Prince (BPP). Seismic stratigraphic studies of CHIRP high-resolution subbottom profiles calibrated to ages obtained from sediment cores and previous coral reef studies provide a Holocene record of relative sea level rise into the BPB and LE and a time frame for understanding tectonics of the EPGF. The BPP is 20 km wide, 20 km long, 150 m deep, and surrounded by coral reefs at water depths of 30 m. Three seismic units were identified: Unit 1: stepped terraces 5-10 m high. Laminated strata onlaps the terraces. This unit possibly represents Marine Isotope Stages 6 and 5, but has not been dated. Unit 2: laminated strata, thicker than 10 m and dated near its top at 22 ka BP. The microfossil assemblages reveal that during the latest Pleistocene sea level lowstand the BPP had a restricted connection with the global ocean. Few well-preserved marine microfossils are present and mostly are reworked. Geochemical analyses reveal that the laminated sediments were deposited during wet periods (>Si, Al wt %, Cu ppm) and dry periods (>Ca wt %). Unit 3: acoustically transparent, ~10 m thick, dated near its base and top at 14 ka BP and 2 ka BP, respectively. This unit represents the Holocene initiation of sea level rise and high stand containing well-preserved marine fossils. At ~9.5 ka BP planktonic foraminifers become abundant implying deepening of marine waters. Lake Enriquillo is 127 km east of the BPP. It is 15 km wide, 40 km long and 45 m deep. CHIRP subbottom profiles penetrated ~30 m below the lake floor. Four main acoustic units were identified: Unit 1: deformed basement with steeply dipping and folded beds. Based on land studies this unit is likely Plio-Pleistocene in age. Unit 2: laminated strata. Ages from coral reefs and deformed strata on land indicate this unit is likely pre-20 ka BP. Unit 3: acoustically transparent is 5-10 m thick. This unit shows top-lap terminations with the overlying strata and is interpreted as marine. Based on coral reef ages it was deposited during the Holocene 10 to 2 ka BP. Unit 4: laminated strata is ~ 5 m thick and downlaps offshore forming progradational packages. Pending Pb-210 ages from LE sediment cores a correlation between the two basins is proposed. During the latest Pleistocene sea level lowstand LE was separated from the BPP and the global ocean. The BPP was only partly connected to the sea. Sedimentation in both basins was dominated by wet and dry climate. The initial rise to high-stand of sea level into the BPP was at 14 ka BP. LE marine incursion was at 9.7 ka BP. At 2.8 ka BP LE became separated from the BPP possibly due to increased alluvial fan sedimentation. Evaporative conditions dominated the lake from 2.8 ka BP to the present and the lake waters lowered to ~43 m below sea level. We interpret the top laminated strata as deposited during the evaporative stage of the lake. Sediment progradation resulted from increased sedimentation due to lowering of base level. There is no evidence of tectonic activity in the BPP during the Holocene. In contrast, there are breaks in the Holocene strata in LE. So the EPGF is technically active across LE.

Management under uncertainty: guide-lines for incorporating connectivity into the protection of coral reefs

NASA Astrophysics Data System (ADS)

McCook, L. J.; Almany, G. R.; Berumen, M. L.; Day, J. C.; Green, A. L.; Jones, G. P.; Leis, J. M.; Planes, S.; Russ, G. R.; Sale, P. F.; Thorrold, S. R.

2009-06-01

The global decline in coral reefs demands urgent management strategies to protect resilience. Protecting ecological connectivity, within and among reefs, and between reefs and other ecosystems is critical to resilience. However, connectivity science is not yet able to clearly identify the specific measures for effective protection of connectivity. This article aims to provide a set of principles or practical guidelines that can be applied currently to protect connectivity. These ‘rules of thumb’ are based on current knowledge and expert opinion, and on the philosophy that, given the urgency, it is better to act with incomplete knowledge than to wait for detailed understanding that may come too late. The principles, many of which are not unique to connectivity, include: (1) allow margins of error in extent and nature of protection, as insurance against unforeseen or incompletely understood threats or critical processes; (2) spread risks among areas; (3) aim for networks of protected areas which are: (a) comprehensive and spread—protect all biotypes, habitats and processes, etc., to capture as many possible connections, known and unknown; (b) adequate—maximise extent of protection for each habitat type, and for the entire region; (c) representative—maximise likelihood of protecting the full range of processes and spatial requirements; (d) replicated—multiple examples of biotypes or processes enhances risk spreading; (4) protect entire biological units where possible (e.g. whole reefs), including buffers around core areas. Otherwise, choose bigger rather than smaller areas; (5) provide for connectivity at a wide range of dispersal distances (within and between patches), emphasising distances <20-30 km; and (6) use a portfolio of approaches, including but not limited to MPAs. Three case studies illustrating the application of these principles to coral reef management in the Bohol Sea (Philippines), the Great Barrier Reef (Australia) and Kimbe Bay (Papua New Guinea) are described.

Geology and biology of the "Sticky Grounds", shelf-margin carbonate mounds, and mesophotic ecosystem in the eastern Gulf of Mexico

NASA Astrophysics Data System (ADS)

Locker, Stanley D.; Reed, John K.; Farrington, Stephanie; Harter, Stacey; Hine, Albert C.; Dunn, Shane

2016-08-01

Shelf-margin carbonate mounds in water depths of 116-135 m in the eastern Gulf of Mexico along the central west Florida shelf were investigated using swath bathymetry, side-scan sonar, sub-bottom imaging, rock dredging, and submersible dives. These enigmatic structures, known to fisherman as the "Sticky Grounds", trend along slope, are 5-15 m in relief with base diameters of 5-30 m, and suggest widespread potential for mesophotic reef habitat along the west Florida outer continental shelf. Possible origins are sea-level lowstand coral patch reefs, oyster reefs, or perhaps more recent post-lowstand biohermal development. Rock dredging recovered bioeroded carbonate-rock facies comprised of bored and cemented bioclastics. Rock sample components included calcified worm tubes, pelagic sediment, and oysters normally restricted to brackish nearshore areas. Several reef sites were surveyed at the Sticky Grounds during a cruise in August 2010 with the R/V Seward Johnson using the Johnson-Sea-Link II submersible to ground truth the swath-sonar maps and to quantify and characterize the benthic habitats, benthic macrofauna, fish populations, and coral/sponge cover. This study characterizes for the first time this mesophotic reef ecosystem and associated fish populations, and analyzes the interrelationships of the fish assemblages, benthic habitats and invertebrate biota. These highly eroded rock mounds provide extensive hard-bottom habitat for reef invertebrate species as well as essential fish habitat for reef fish and commercially/recreationally important fish species. The extent and significance of associated living resources with these bottom types is particularly important in light of the 2010 Deepwater Horizon oil spill in the northeastern Gulf and the proximity of the Loop Current. Mapping the distribution of these mesophotic-depth ecosystems is important for quantifying essential fish habitat and describing benthic resources. These activities can improve ecosystem management and planning of future oil and gas activities in this outer continental shelf region.

Geology and biology of the "Sticky Grounds," shelf-margin carbonate mounds, and mesophotic ecosystem in the eastern Gulf of Mexico

USGS Publications Warehouse

Locker, Stanley D.; Reed, John K.; Farrington, Stephanie; Harter, Stacey; Hine, Albert C.; Dunn, Shane

2016-01-01

Shelf-margin carbonate mounds in water depths of 116–135 m in the eastern Gulf of Mexico along the central west Florida shelf were investigated using swath bathymetry, side-scan sonar, sub-bottom imaging, rock dredging, and submersible dives. These enigmatic structures, known to fisherman as the “Sticky Grounds”, trend along slope, are 5–15 m in relief with base diameters of 5–30 m, and suggest widespread potential for mesophotic reef habitat along the west Florida outer continental shelf. Possible origins are sea-level lowstand coral patch reefs, oyster reefs, or perhaps more recent post-lowstand biohermal development. Rock dredging recovered bioeroded carbonate-rock facies comprised of bored and cemented bioclastics. Rock sample components included calcified worm tubes, pelagic sediment, and oysters normally restricted to brackish nearshore areas. Several reef sites were surveyed at the Sticky Grounds during a cruise in August 2010 with the R/V Seward Johnson using the Johnson-Sea-Link II submersible to ground truth the swath-sonar maps and to quantify and characterize the benthic habitats, benthic macrofauna, fish populations, and coral/sponge cover. This study characterizes for the first time this mesophotic reef ecosystem and associated fish populations, and analyzes the interrelationships of the fish assemblages, benthic habitats and invertebrate biota. These highly eroded rock mounds provide extensive hard-bottom habitat for reef invertebrate species as well as essential fish habitat for reef fish and commercially/recreationally important fish species. The extent and significance of associated living resources with these bottom types is particularly important in light of the 2010 Deepwater Horizon oil spill in the northeastern Gulf and the proximity of the Loop Current. Mapping the distribution of these mesophotic-depth ecosystems is important for quantifying essential fish habitat and describing benthic resources. These activities can improve ecosystem management and planning of future oil and gas activities in this outer continental shelf region.

High-latitude steppe vegetation and the mineral nutrition of Pleistocene herbivores

NASA Astrophysics Data System (ADS)

Davydov, S. P.; Davydova, A.; Makarevich, R.; Loranty, M. M.; Boeskorov, G.

2014-12-01

High-latitude steppes were widespread and zonal in the Late Pleistocene and formed a landscape basis for the Mammoth Biome. Now the patches of these steppes survived on steep slopes under southern aspects. These steppes serve as unique information sources about the Late Pleistocene "Mammoth" steppe. Numerous data obtained by palynological, carpological, and DNA analysis of plant remains from feces and stomach contents of Pleistocene herbivore mummies, as well as from buried soils and enclosing deposits show that they are similar to modern steppe plant assemblage in taxa composition. Plant's nutrient concentrations are of fundamental importance across Pleistocene grass-rich ecosystems because of their role in the support of large herbivores. The average weight of an adult mammoth skeleton (about 0.5 tons) and of a woolly rhinoceros (about 0.2 tons) clearly suggests this. Detailed studies on fossil bone remains showed mineral deficiency in large Pleistocene herbivores. A three-year study of ash and mineral contents of two types of relict steppe vegetation at the Kolyma Lowland, Arctic Siberia has been carried out. Nowadays refugia of similar vegetation are located not far (1 - 15km) from the Yedoma permafrost outcrops were abundant fossil remains are found. Dominant species of the steppe vegetation were sampled. Preliminary studies indicate that the ash-content varied 1.5-2 times in speceies of steppe herbs. The Ca, P, Mg, K element contents was higher for most steppe species than in the local herbaceous vegetation, especially in Ca and P. One of the most important elements of the mineral nutrition, the phosphorus, was always found in higher concentrations in the steppe vegetation than in plants of recently dominant landscapes of the study area. It should be noted that the mineral nutrient content of the modern steppe vegetation of Siberian Arctic is comparable to that of the recent zonal steppe of Transbaikal Region. This study supports the hypothesis that aboveground mineral concentrations of late Pleistocene grass-rich ecosystem were consistently higher than that of the recent common species of Siberian Arctic grassland. The source of mineral nutrients in the Pleistocene high-latitude steppe vegetation served as one of the reasons for the existence and survival of large herbivores in the Mammoth Biome.

Deposit from a giant wave on the Island of Lanai, Hawaii

USGS Publications Warehouse

Moore, J.G.; Moore, G.W.

1984-01-01

Limestone-bearing gravel, the newly named Hulopoe Gravel, blankets the coastal slopes on Lanai. The deposit, which reaches a maximum altitude of 326 meters, formerly was believed to have been deposited along several different ancient marine strandlines, but dated submerged coral reefs and tide-gauge measurements indicate that the southeastern Hawaiian Islands sink so fast that former worldwide high stands of the sea now lie beneath local sea level. Evidence indicates that the Hulopoe Gravel and similar deposits on nearby islands were deposited during the Pleistocene by a giant wave generated by a submarine landslide on a sea scarp south of Lanai.

Phylogeography of western Pacific Leucetta 'chagosensis' (Porifera: Calcarea) from ribosomal DNA sequences: implications for population history and conservation of the Great Barrier Reef World Heritage Area (Australia).

PubMed

Wörheide, Gert; Hooper, John N A; Degnan, Bernard M

2002-09-01

Leucetta 'chagosensis' is a widespread calcareous sponge, occurring in shaded habitats of Indo-Pacific coral reefs. In this study we explore relationships among 19 ribosomal DNA sequence types (the ITS1-5.8S-ITS2 region plus flanking gene sequences) found among 54 individuals from 28 locations throughout the western Pacific, with focus on the Great Barrier Reef (GBR). Maximum parsimony analysis revealed phylogeographical structuring into four major clades (although not highly supported by bootstrap analysis) corresponding to the northern/central GBR with Guam and Taiwan, the southern GBR and subtropical regions south to Brisbane, Vanuatu and Indonesia. Subsequent nested clade analysis (NCA) confirmed this structure with a probability of > 95%. After NCA of geographical distances, a pattern of range expansion from the internal Indonesian clade was inferred at the total cladogram level, as the Indonesian clade was found to be the internal and therefore oldest clade. Two distinct clades were found on the GBR, which narrowly overlap geographically in a line approximately from the Whitsunday Islands to the northern Swain Reefs. At various clade levels, NCA inferred that the northern GBR clade was influenced by past fragmentation and contiguous range expansion events, presumably during/after sea level low stands in the Pleistocene, after which the northern GBR might have been recolonized from the Queensland Plateau in the Coral Sea. The southern GBR clade is most closely related to subtropical L. 'chagosensis', and we infer that the southern GBR probably was recolonized from there after sea level low stands, based on our NCA results and supported by oceanographic data. Our results have important implications for conservation and management of the GBR, as they highlight the importance of marginal transition zones in the generation and maintenance of species rich zones, such as the Great Barrier Reef World Heritage Area.

Population structure within an alpine archipelago: strong signature of past climate change in the New Zealand rock wren (Xenicus gilviventris).

PubMed

Weston, K A; Robertson, B C

2015-09-01

Naturally subdivided populations such as those occupying high-altitude habitat patches of the 'alpine archipelago' can provide significant insight into past biogeographical change and serve as useful models for predicting future responses to anthropogenic climate change. Among New Zealand's alpine taxa, phylogenetic studies support two major radiations: the first correlating with geological forces (Pliocene uplift) and the second with climatic processes (Pleistocene glaciations). The rock wren (Xenicus gilviventris) is a threatened alpine passerine belonging to the endemic New Zealand wren family (Acanthisittidae). Rock wren constitute a widespread, naturally fragmented population, occurring in patches of suitable habitat over c. 900 m in altitude throughout the length of the South Island, New Zealand. We investigated the relative role of historical geological versus climatic processes in shaping the genetic structure of rock wren (N = 134) throughout their range. Using microsatellites combined with nuclear and mtDNA sequence data, we identify a deep north-south divergence in rock wren (3.7 ± 0.5% at cytochrome b) consistent with the glacial refugia hypothesis whereby populations were restricted in isolated refugia during the Pleistocene c. 2 Ma. This is the first study of an alpine vertebrate to test and provide strong evidence for the glacial refugia hypothesis as an explanation for the low endemicity central zone known as the biotic 'gap' in the South Island of New Zealand. © 2015 John Wiley & Sons Ltd.

A 1500-year holocene caribbean climate archive from the Blue Hole, lighthouse reef, belize

USGS Publications Warehouse

Gischler, E.; Shinn, E.A.; Oschmann, W.; Fiebig, J.; Buster, N.A.

2008-01-01

Sediment cores (up to 6 m in length) from the bottom of the Blue Hole, a 125 m deep Pleistocene sinkhole located in the lagoon of Lighthouse Reef Atoll, Belize, consist of undisturbed, annually layered biogenic carbonate muds and silts with intercalated coarser grained storm beds. The sedimentation rate of the layered sections is 2.5 mm/y on average, and the long cores span the past 1500 years. Oxygen isotopes of laminated sediment provide a late Holocene climate proxy: A high-resolution ??18O time series traces the final Migration Period Pessimum, the Medieval Warm Period, the Little Ice Age, and the subsequent temperature rise. Carbon isotopes (??13C) decrease up core and show the impacts of the decline of the Mayan culture and the Suess effect. Time series analyses of ??18O and ??13C content reveal 88-, 60-, 52-, and 32-year cyclicities, and suggest solar forcing. Storm event beds are most common during AD 650-850, around AD 1000, during AD 1200-1300, and AD 1450-1550. Major storm beds are rare during the past 500 years BP.

Linear extension rates and gross carbonate production of Acropora cervicornis at Coral Gardens, Belize.

NASA Astrophysics Data System (ADS)

Peeling, E.; Greer, L.; Lescinsky, H.; Humston, R.; Wirth, K. R.; Baums, I. B.; Curran, A.

2014-12-01

Branching Acropora coral species have fast growth and carbonate production rates, and thus have functioned as important reef-building species throughout the Pleistocene and Holocene. Recently, net carbonate production (kg CaCO3 m-2 year-1) has been recognized as an important measure of reef health, especially when monitoring endangered species, such as Acropora cervicornis. This study examines carbonate production in a thriving population of A. cervicornis at the Coral Gardens reef in Belize. Photographic surveys were conducted along five transects of A. cervicornis-dominated reefs from 2011-2014. Matching photographs from 2013 and 2014 were scaled to 1 m2 and compared to calculate 84 individual A. cervicornis linear extension rates across the reef. Linear extension rates averaged 12.4 cm/yr and were as high as 17 cm/yr in some areas of the reef. Carbonate production was calculated two ways. The first followed the standard procedure of multiplying percent live coral cover, by the linear extension rate and skeletal density. The second used the number of live coral tips per square meter in place of percent live coral multiplied by the average cross-sectional area of the branches. The standard method yielded a carbonate production rate of 113 kg CaCO3 m-2 year-1 for the reef, and the tip method yielded a rate of 6 kg m-2 year-1. We suggest that the tip method is a more accurate measure of production, because A. cervicornis grows primarily from the live tips, with only limited radial growth and resheeting over dead skeleton. While this method omits the contributions of radial growth and resheeting, and is therefore somewhat of an underestimate, our future work will quantify these aspects of growth in a more complete carbonate budget. Still, our estimate suggests a carbonate production rate per unit area of A. cervicornis that is on par with other Caribbean coral species, rather than two orders of magnitude higher as reported by Perry et al (2013). Although gross coral production at Coral Gardens is high by Caribbean standards, further assessment is required to understand the complete carbonate budget and how well live coral growth may balance bio-erosion or future predicted high CO2 acidification at this site.

The evolution of fishes and corals on reefs: form, function and interdependence.

PubMed

Bellwood, David R; Goatley, Christopher H R; Bellwood, Orpha

2017-05-01

Coral reefs are renowned for their spectacular biodiversity and the close links between fishes and corals. Despite extensive fossil records and common biogeographic histories, the evolution of these two key groups has rarely been considered together. We therefore examine recent advances in molecular phylogenetics and palaeoecology, and place the evolution of fishes and corals in a functional context. In critically reviewing the available fossil and phylogenetic evidence, we reveal a marked congruence in the evolution of the two groups. Despite one group consisting of swimming vertebrates and the other colonial symbiotic invertebrates, fishes and corals have remarkably similar evolutionary histories. In the Paleocene and Eocene [66-34 million years ago (Ma)] most modern fish and coral families were present, and both were represented by a wide range of functional morphotypes. However, there is little evidence of diversification at this time. By contrast, in the Oligocene and Miocene (34-5.3 Ma), both groups exhibited rapid lineage diversification. There is also evidence of increasing reef area, occupation of new habitats, increasing coral cover, and potentially, increasing fish abundance. Functionally, the Oligocene-Miocene is marked by the appearance of new fish and coral taxa associated with high-turnover fast-growth ecosystems and the colonization of reef flats. It is in this period that the functional characteristics of modern coral reefs were established. Most species, however, only arose in the last 5.3 million years (Myr; Plio-Pleistocene), with the average age of fish species being 5.3 Myr, and corals just 1.9 Myr. While these species are genetically distinct, phenotypic differences are often limited to variation in colour or minor morphological features. This suggests that the rapid increase in biodiversity during the last 5.3 Myr was not matched by changes in ecosystem function. For reef fishes, colour appears to be central to recent diversification. However, the presence of pigment patterns in the Eocene suggests that colour may not have driven recent diversification. Furthermore, the lack of functional changes in fishes or corals over the last 5 Myr raises questions over the role and importance of biodiversity in shaping the future of coral reefs. © 2016 Cambridge Philosophical Society.

Chronological, taphonomical, and paleoenvironmental aspects of a Late Pleistocene mammalian fauna from Guanambi, Bahia, Brazil

NASA Astrophysics Data System (ADS)

Scherer, Carolina Saldanha; Pales, Letícia Francielle Moreira; Rosa, Mariane; Silva, Samara de Almeida da

2017-11-01

Bahia state is widely known for the presence of fossiliferous deposits of Late Pleistocene - early Holocene. Although most studies in the state have been carried out on cave environments, studies concerning natural tank deposits have been expanded in the last few years, particularly in other states of Northeast Brazil. Therefore, the present work aims to study two new natural tanks: "Lagoa das Abelhas" and "Lagoa do Rancho", in Guanambi municipality, south-central Bahia, Brazil. The identified taxa include representatives of Xenarthra (Eremotherium laurillardi, cf. Glossotherium sp., Pachyarmatherium brasiliense, Glyptodontinae, Propraopus sulcatus, Pampatherium humboldti, and Holmesina paulacoutoi), Notoungulata (Toxodontidae), Proboscidea, Perissodactyla (Tapirus terrestris and Equus (Amerhippus) neogaeus), and Cetartiodactyla (Camelidae). The taphonomic analysis allowed the fossiliferous deposit from Lagoa das Abelhas to be classified as an ex situ assemblage, while the Lagoa do Rancho deposit was interpreted as a peripheral assemblage. Based on its paleofaunal composition, the landscape of the Guanambi region would have comprised open areas with pastures and patches with arboreal elements. The 14C radiocarbon dating results point to ages of 22,230 ± 55 years for the Lagoa das Abelhas and 16,020 ± 40 years for the Lagoa do Rancho tanks, indicating that the Guanambi paleofauna lived during the Last Glacial Maximum, in a drier phase of the Late Pleistocene.

Individual consistency in the behaviors of newly-settled reef fish

PubMed Central

Meekan, Mark G.; McCormick, Mark I.

2015-01-01

Flexibility in behavior is advantageous for organisms that transition between stages of a complex life history. However, various constraints can set limits on plasticity, giving rise to the existence of personalities that have associated costs and benefits. Here, we document a field and laboratory experiment that examines the consistency of measures of boldness, activity, and aggressive behavior in the young of a tropical reef fish, Pomacentrus amboinensis (Pomacentridae) immediately following their transition between pelagic larval and benthic juvenile habitats. Newly-settled fish were observed in aquaria and in the field on replicated patches of natural habitat cleared of resident fishes. Seven behavioral traits representing aspects of boldness, activity and aggression were monitored directly and via video camera over short (minutes), medium (hours), and long (3 days) time scales. With the exception of aggression, these behaviors were found to be moderately or highly consistent over all time scales in both laboratory and field settings, implying that these fish show stable personalities within various settings. Our study is the first to examine the temporal constancy of behaviors in both field and laboratory settings in over various time scales at a critically important phase during the life cycle of a reef fish. PMID:26020013

Individual consistency in the behaviors of newly-settled reef fish.

PubMed

White, James R; Meekan, Mark G; McCormick, Mark I

2015-01-01

Flexibility in behavior is advantageous for organisms that transition between stages of a complex life history. However, various constraints can set limits on plasticity, giving rise to the existence of personalities that have associated costs and benefits. Here, we document a field and laboratory experiment that examines the consistency of measures of boldness, activity, and aggressive behavior in the young of a tropical reef fish, Pomacentrus amboinensis (Pomacentridae) immediately following their transition between pelagic larval and benthic juvenile habitats. Newly-settled fish were observed in aquaria and in the field on replicated patches of natural habitat cleared of resident fishes. Seven behavioral traits representing aspects of boldness, activity and aggression were monitored directly and via video camera over short (minutes), medium (hours), and long (3 days) time scales. With the exception of aggression, these behaviors were found to be moderately or highly consistent over all time scales in both laboratory and field settings, implying that these fish show stable personalities within various settings. Our study is the first to examine the temporal constancy of behaviors in both field and laboratory settings in over various time scales at a critically important phase during the life cycle of a reef fish.

Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (south Florida): Long-spined Black Sea urchin. [Diadema antillarum

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ogden, J.C.; Carpenter, R.C.

1987-08-01

The long-spined black sea urchin, Diadema antillarum, is one of the most common marine invertebrates in the South Florida and Caribbean regions. Diadema is gregarious and is found in large groups on hard bottom in shallow waters. Spawning is year-round, concentrated in late winter to early summer, and the larvae spend an unknown period in the plankton. Following settlement, growth is rapid, to a maximum size of about 10 cm in 3 to 4 years. Diadema is a grazer, feeding on small algal filaments and on seagrass, and tends to be active at night. Grazing activities can produce grazed halosmore » around patch reefs in the vicinity of seagrass beds. Many experiments have indicated the importance of this grazing in the coexistence of species on the reef and in maintaining high biological productivity. In 1983-84, Diadema suffered an unprecedented mass mortality and its populations were reduced by up to 98% throughout its range. The elimination of Diadema has affected algal biomass, reef productivity, and fish populations. Diadema populations are slowly beginning to increase, but complete recovery may take years.« less

Applications of fractals in ecology.

PubMed

Sugihara, G; M May, R

1990-03-01

Fractal models describe the geometry of a wide variety of natural objects such as coastlines, island chains, coral reefs, satellite ocean-color images and patches of vegetation. Cast in the form of modified diffusion models, they can mimic natural and artificial landscapes having different types of complexity of shape. This article provides a brief introduction to fractals and reports on how they can be used by ecologists to answer a variety of basic questions, about scale, measurement and hierarchy in, ecological systems. Copyright © 1990. Published by Elsevier Ltd.

Kenya.

PubMed

Obura, D O

2001-12-01

The Kenya coast is bathed by the northward-flowing warm waters of the East Africa Coastal Current, located between latitudes 1 and 5 degrees S. With a narrow continental shelf, the coastal marine environments are dominated by coral reefs, seagrass beds and mangroves, with large expanses of sandy substrates where river inputs from Kenya's two largest rivers, the Tana and Athi rivers, prevent the growth of coral reefs. The northern part of the coast is seasonally influenced by upwelling waters of the Somali Current, resulting in lower water temperatures for part of the year. The coast is made up of raised Pleistocene reefs on coastal plains and hills of sedimentary origin, which support native habitats dominated by scrub bush and remnant pockets of the forests that used to cover East Africa and the Congo basin. The marine environment is characterized by warm tropical conditions varying at the surface between 25 degrees C and 31 degrees C during the year, stable salinity regimes, and moderately high nutrient levels from terrestrial runoff and groundwater. The semi-diurnal tidal regime varies from 1.5 to 4 m amplitude from neap to spring tides, creating extensive intertidal platform and rocky-shore communities exposed twice-daily during low tides. Fringing reef crests dominate the whole southern coast and parts of the northern coast towards Somalia, forming a natural barrier to the wave energy from the ocean. Coral reefs form the dominant ecosystem along the majority of the Kenya coast, creating habitats for seagrasses and mangroves in the lagoons and creeks protected by the reef crests. Kenya's marine environment faces a number of threats from the growing coastal human population estimated at just under three million in 2000. Extraction of fish and other resources from the narrow continental shelf, coral reef and mangrove ecosystems increases each year with inadequate monitoring and management structures to protect the resource bases. Coastal development in urban and tourist centers proceeds with little regard for environmental and social impacts. With a faltering economy, industrial development in Mombasa proceeds with few checks on pollution and other impacts. In 1998 Kenya's coral reefs suffered 50-80% mortality from the El Niño-related coral bleaching event that affected the entire Indian Ocean. The institutional, human resource and legal infrastructure for managing the coastal environment has in the past been low, however these are rapidly improving with the revitalization of national institutions and the passing in 1999 of an Environment Act. Marine Protected Areas are the key tool currently used in management of marine ecosystems, and focus principally on coral reefs and biodiversity protection. New initiatives are underway to improve application of fisheries regulations, and to use Integrated Coastal Area Management (ICAM) as a framework for protecting marine and coastal environments.

Aura-biomes are present in the water layer above coral reef benthic macro-organisms.

PubMed

Walsh, Kevin; Haggerty, J Matthew; Doane, Michael P; Hansen, John J; Morris, Megan M; Moreira, Ana Paula B; de Oliveira, Louisi; Leomil, Luciana; Garcia, Gizele D; Thompson, Fabiano; Dinsdale, Elizabeth A

2017-01-01

As coral reef habitats decline worldwide, some reefs are transitioning from coral- to algal-dominated benthos with the exact cause for this shift remaining elusive. Increases in the abundance of microbes in the water column has been correlated with an increase in coral disease and reduction in coral cover. Here we investigated how multiple reef organisms influence microbial communities in the surrounding water column. Our study consisted of a field assessment of microbial communities above replicate patches dominated by a single macro-organism. Metagenomes were constructed from 20 L of water above distinct macro-organisms, including (1) the coral Mussismilia braziliensis , (2) fleshy macroalgae ( Stypopodium , Dictota and Canistrocarpus ), (3) turf algae, and (4) the zoanthid Palythoa caribaeorum and were compared to the water microbes collected 3 m above the reef. Microbial genera and functional potential were annotated using MG-RAST and showed that the dominant benthic macro-organisms influence the taxa and functions of microbes in the water column surrounding them, developing a specific "aura-biome". The coral aura-biome reflected the open water column, and was associated with Synechococcus and functions suggesting oligotrophic growth, while the fleshy macroalgae aura-biome was associated with Ruegeria , Pseudomonas, and microbial functions suggesting low oxygen conditions. The turf algae aura-biome was associated with Vibrio, Flavobacterium, and functions suggesting pathogenic activity, while zoanthids were associated with Alteromonas and functions suggesting a stressful environment. Because each benthic organism has a distinct aura-biome, a change in benthic cover will change the microbial community of the water, which may lead to either the stimulation or suppression of the recruitment of benthic organisms.

Aura-biomes are present in the water layer above coral reef benthic macro-organisms

PubMed Central

Haggerty, J. Matthew; Doane, Michael P.; Hansen, John J.; Morris, Megan M.; Moreira, Ana Paula B.; de Oliveira, Louisi; Leomil, Luciana; Garcia, Gizele D.; Thompson, Fabiano; Dinsdale, Elizabeth A.

2017-01-01

As coral reef habitats decline worldwide, some reefs are transitioning from coral- to algal-dominated benthos with the exact cause for this shift remaining elusive. Increases in the abundance of microbes in the water column has been correlated with an increase in coral disease and reduction in coral cover. Here we investigated how multiple reef organisms influence microbial communities in the surrounding water column. Our study consisted of a field assessment of microbial communities above replicate patches dominated by a single macro-organism. Metagenomes were constructed from 20 L of water above distinct macro-organisms, including (1) the coral Mussismilia braziliensis, (2) fleshy macroalgae (Stypopodium, Dictota and Canistrocarpus), (3) turf algae, and (4) the zoanthid Palythoa caribaeorum and were compared to the water microbes collected 3 m above the reef. Microbial genera and functional potential were annotated using MG-RAST and showed that the dominant benthic macro-organisms influence the taxa and functions of microbes in the water column surrounding them, developing a specific “aura-biome”. The coral aura-biome reflected the open water column, and was associated with Synechococcus and functions suggesting oligotrophic growth, while the fleshy macroalgae aura-biome was associated with Ruegeria, Pseudomonas, and microbial functions suggesting low oxygen conditions. The turf algae aura-biome was associated with Vibrio, Flavobacterium, and functions suggesting pathogenic activity, while zoanthids were associated with Alteromonas and functions suggesting a stressful environment. Because each benthic organism has a distinct aura-biome, a change in benthic cover will change the microbial community of the water, which may lead to either the stimulation or suppression of the recruitment of benthic organisms. PMID:28828261

Linking removal targets to the ecological effects of invaders: a predictive model and field test.

PubMed

Green, Stephanie J; Dulvy, Nicholas K; Brooks, Annabelle M L; Akins, John L; Cooper, Andrew B; Miller, Skylar; Côté, Isabelle M

Species invasions have a range of negative effects on recipient ecosystems, and many occur at a scale and magnitude that preclude complete eradication. When complete extirpation is unlikely with available management resources, an effective strategy may be to suppress invasive populations below levels predicted to cause undesirable ecological change. We illustrated this approach by developing and testing targets for the control of invasive Indo-Pacific lionfish (Pterois volitans and P. miles) on Western Atlantic coral reefs. We first developed a size-structured simulation model of predation by lionfish on native fish communities, which we used to predict threshold densities of lionfish beyond which native fish biomass should decline. We then tested our predictions by experimentally manipulating lionfish densities above or below reef-specific thresholds, and monitoring the consequences for native fish populations on 24 Bahamian patch reefs over 18 months. We found that reducing lionfish below predicted threshold densities effectively protected native fish community biomass from predation-induced declines. Reductions in density of 25–92%, depending on the reef, were required to suppress lionfish below levels predicted to overconsume prey. On reefs where lionfish were kept below threshold densities, native prey fish biomass increased by 50–70%. Gains in small (<6 cm) size classes of native fishes translated into lagged increases in larger size classes over time. The biomass of larger individuals (>15 cm total length), including ecologically important grazers and economically important fisheries species, had increased by 10–65% by the end of the experiment. Crucially, similar gains in prey fish biomass were realized on reefs subjected to partial and full removal of lionfish, but partial removals took 30% less time to implement. By contrast, the biomass of small native fishes declined by >50% on all reefs with lionfish densities exceeding reef-specific thresholds. Large inter-reef variation in the biomass of prey fishes at the outset of the study, which influences the threshold density of lionfish, means that we could not identify a single rule of thumb for guiding control efforts. However, our model provides a method for setting reef-specific targets for population control using local monitoring data. Our work is the first to demonstrate that for ongoing invasions, suppressing invaders below densities that cause environmental harm can have a similar effect, in terms of protecting the native ecosystem on a local scale, to achieving complete eradication.

In-Situ Effects of Simulated Overfishing and Eutrophication on Benthic Coral Reef Algae Growth, Succession, and Composition in the Central Red Sea.

PubMed

Jessen, Christian; Roder, Cornelia; Villa Lizcano, Javier Felipe; Voolstra, Christian R; Wild, Christian

2013-01-01

Overfishing and land-derived eutrophication are major local threats to coral reefs and may affect benthic communities, moving them from coral dominated reefs to algal dominated ones. The Central Red Sea is a highly under-investigated area, where healthy coral reefs are contending against intense coastal development. This in-situ study investigated both the independent and combined effects of manipulated inorganic nutrient enrichment (simulation of eutrophication) and herbivore exclosure (simulation of overfishing) on benthic algae development. Light-exposed and shaded terracotta tiles were positioned at an offshore patch reef close to Thuwal, Saudi Arabia and sampled over a period of 4 months. Findings revealed that nutrient enrichment alone affected neither algal dry mass nor algae-derived C or N production. In contrast, herbivore exclusion significantly increased algal dry mass up to 300-fold, and in conjunction with nutrient enrichment, this total increased to 500-fold. Though the increase in dry mass led to a 7 and 8-fold increase in organic C and N content, respectively, the algal C/N ratio (18±1) was significantly lowered in the combined treatment relative to controls (26±2). Furthermore, exclusion of herbivores significantly increased the relative abundance of filamentous algae on the light-exposed tiles and reduced crustose coralline algae and non-coralline red crusts on the shaded tiles. The combination of the herbivore exclusion and nutrient enrichment treatments pronounced these effects. The results of our study suggest that herbivore reduction, particularly when coupled with nutrient enrichment, favors non-calcifying, filamentous algae growth with high biomass production, which thoroughly outcompetes the encrusting (calcifying) algae that dominates in undisturbed conditions. These results suggest that the healthy reefs of the Central Red Sea may experience rapid shifts in benthic community composition with ensuing effects for biogeochemical cycles if anthropogenic impacts, particularly overfishing, are not controlled.

In-Situ Effects of Simulated Overfishing and Eutrophication on Benthic Coral Reef Algae Growth, Succession, and Composition in the Central Red Sea

PubMed Central

Jessen, Christian; Roder, Cornelia; Villa Lizcano, Javier Felipe; Voolstra, Christian R.; Wild, Christian

2013-01-01

Overfishing and land-derived eutrophication are major local threats to coral reefs and may affect benthic communities, moving them from coral dominated reefs to algal dominated ones. The Central Red Sea is a highly under-investigated area, where healthy coral reefs are contending against intense coastal development. This in-situ study investigated both the independent and combined effects of manipulated inorganic nutrient enrichment (simulation of eutrophication) and herbivore exclosure (simulation of overfishing) on benthic algae development. Light-exposed and shaded terracotta tiles were positioned at an offshore patch reef close to Thuwal, Saudi Arabia and sampled over a period of 4 months. Findings revealed that nutrient enrichment alone affected neither algal dry mass nor algae-derived C or N production. In contrast, herbivore exclusion significantly increased algal dry mass up to 300-fold, and in conjunction with nutrient enrichment, this total increased to 500-fold. Though the increase in dry mass led to a 7 and 8-fold increase in organic C and N content, respectively, the algal C/N ratio (18±1) was significantly lowered in the combined treatment relative to controls (26±2). Furthermore, exclusion of herbivores significantly increased the relative abundance of filamentous algae on the light-exposed tiles and reduced crustose coralline algae and non-coralline red crusts on the shaded tiles. The combination of the herbivore exclusion and nutrient enrichment treatments pronounced these effects. The results of our study suggest that herbivore reduction, particularly when coupled with nutrient enrichment, favors non-calcifying, filamentous algae growth with high biomass production, which thoroughly outcompetes the encrusting (calcifying) algae that dominates in undisturbed conditions. These results suggest that the healthy reefs of the Central Red Sea may experience rapid shifts in benthic community composition with ensuing effects for biogeochemical cycles if anthropogenic impacts, particularly overfishing, are not controlled. PMID:23840570

Experimental evaluation of diversity-productivity relationships in a coral reef fish assemblage.

PubMed

Messmer, Vanessa; Blowes, Shane A; Jones, Geoffrey P; Munday, Philip L

2014-09-01

The global decline in biodiversity is causing increasing concern about the effects of biodiversity loss on ecosystem services such as productivity. Biodiversity has been hypothesised to be important in maintaining productivity of biological assemblages because niche complementarity and facilitation among the constituent species can result in more efficient use of resources. However, these conclusions are primarily based on studies with plant communities, and the relationship between diversity and productivity at higher trophic levels is largely unknown, especially in the marine environment. Here, we used a manipulative field experiment to test the effects of species richness and species identity on biomass accumulation in coral reef fish assemblages at Lizard Island. Small patch reefs were stocked with a total of 30 juveniles belonging to three planktivorous damselfish (genus Pomacentrus) according to three different levels of fish species richness (one, two and three species) and seven different combinations of fish species. Species richness had no effect on the relative growth in this assemblage after 18 days, but relative growth differed among individual fish species and the different combinations of species. Patterns of increase in biomass were best explained by species-specific differences and variable effects of intra- and interspecific competition on growth. These results suggest that niche complementarity and facilitation are not the most influential drivers of total productivity within this guild of planktivorous fishes. Total productivity may be resilient to declining reef fish biodiversity, but this will depend on which species are lost and on the life-history traits of remaining species.

Climatic, geomorphic, and archaeological implications of a late Quaternary alluvial chronology for the lower Salt River, Arizona, USA

NASA Astrophysics Data System (ADS)

Huckleberry, Gary; Onken, Jill; Graves, William M.; Wegener, Robert

2013-03-01

Recent archaeological excavations along the lower Salt River, Arizona resulted in the unexpected discovery of buried late Pleistocene soils and cultural features dating 5800-7100 cal YBP (Early Archaic), the latter representing the earliest evidence of human activity in the lower Salt River floodplain thus far identified. Because the lower Salt River floodplain has been heavily impacted by recent agriculture and urbanization and contains few stratigraphic exposures, our understanding of the river's geological history is limited. Here we present a late Quaternary alluvial chronology for a segment of the lower Salt River based on 19 accelerator mass spectrometry 14C and four optically stimulated luminescence ages obtained during two previous geoarchaeological investigations. Deposits are organized into allostratigraphic units and reveal a buried late Pleistocene terrace inset into middle-to-late Pleistocene terrace deposits. Holocene terrace fill deposits unconformably cap the late Pleistocene terrace tread in the site area, and the lower portion of this fill contains the Early Archaic archaeological features. Channel entrenchment and widening ~ 900 cal YBP eroded much of the older terrace deposits, leaving only a remnant of fill containing the buried latest Pleistocene and middle-to-late Holocene deposits preserved in the site area. Subsequent overbank deposition and channel filling associated with a braided channel system resulted in the burial of the site by a thin layer of flood sediments. Our study confirms that the lower Salt River is a complex mosaic of late Quaternary alluvium formed through vertical and lateral accretion, with isolated patches of buried soils preserved through channel avulsion. Although channel avulsion is linked to changes in sediment load and discharge and may have climatic linkages, intrinsic geomorphic and local base level controls limit direct correlations of lower Salt River stratigraphy to other large rivers in the North American Southwest.

Late Holocene and recent rainforest cultural landscapes of North Queensland, Australia

NASA Astrophysics Data System (ADS)

Steinberger, L. M.; Moss, P. T.; Haberle, S.; Cosgrove, R.; Ferrier

2011-12-01

The tropical rainforests of North Queensland, Australia, have been environments of significant human activity for several thousand years. Palaeoecological research has highlighted the long-term effects of Quaternary climate change on these environments at a broad spatial scale, including the expansion of tropical rainforest across the region following the termination of the Last Glacial Maximum. However, identifying the effects of a hunter-gatherer Aboriginal population has been more difficult. Palaeoecological suggestions of Pleistocene Aboriginal burning, based on pollen and charcoal records, have relied on coincident timing with a general narrative of colonisation rather than direct links with archaeological evidence. Current research is explicitly examining the environmental consequences of human activity in North Queensland rainforests by producing local palaeoecological data directly linked to sites and periods of human occupation. Pollen, macrocharcoal and phytolith records have been produced from sites of human activity within the rainforest. Late Holocene Aboriginal occupation of the rainforest is demonstrated to have had significant cultural links to patches of open vegetation that existed within the rainforest. While these patches are likely to have originated as edaphically controlled remnants of Pleistocene vegetation, their expansion and maintenance in the late Holocene is associated with increasing intensity of Aboriginal occupation of the rainforest. Late Holocene Aboriginal rainforest occupation is also contrasted with the historical European colonisation of the rainforest in the late 19th century, which resulted in the most significant environmental changes in the region since the early Holocene. Historical and ethnographic records provide important cultural context for understanding the transition between Aboriginal and European cultural landscapes of the rainforest.

Genetic evidence supports larval retention in the Western Caribbean for an invertebrate with high dispersal capability ( Ophiothrix suensonii: Echinodermata, Ophiuroidea)

NASA Astrophysics Data System (ADS)

Richards, V. P.; DeBiasse, M. B.; Shivji, M. S.

2015-03-01

The brittle star Ophiothrix suensonii is a common coral reef sponge commensal with high dispersal potential. Here, we utilize COI sequence data from 264 O. suensonii individuals collected from 10 locations throughout Florida and the Caribbean to investigate dispersal dynamics and demographic history. Locations separated by up to 1,700 km lacked genetic differentiation, confirming the ability for long-range dispersal. However, significant differentiation was detected among other regions. Samples from Utila, Honduras showed the greatest differentiation, suggesting that the circulation of the Mesoamerican gyre could be a significant factor restricting gene flow in this region. Demographic analyses provided strong evidence for a population expansion, possibly out of Florida, through the Caribbean, and into Honduras, which commenced in the early Pleistocene. However, the presence of a clade of rare haplotypes, which split much earlier (mid-Pliocene), indicates that O. suensonii persisted long before its recent expansion, suggesting a cyclic history of population contraction and expansion. Finally, patterns of gene flow are not concordant with contemporary surface currents; rather, they reflect historical movements possibly linked with changes in circulation during periods of Pleistocene climate change.

The geology and chronology of the Acheulean deposits in the Mieso area (East-Central Ethiopia).

PubMed

Benito-Calvo, Alfonso; Barfod, Dan N; McHenry, Lindsay J; de la Torre, Ignacio

2014-11-01

This paper presents the Quaternary sequence of the Mieso area of Central-East Ethiopia, located in the piedmont between the SE Ethiopian Escarpment and the Main Ethiopian Rift-Afar Rift transition sector.In this region, a piedmont alluvial plain is terraced at þ25 m above the two main fluvial courses, the Mieso and Yabdo Rivers. The piedmont sedimentary sequence is divided into three stratigraphic units separated by unconformities. Mieso Units I and II contain late Acheulean assemblages and a weakly consolidated alluvial sequence, consisting mainly of fine sediments with buried soils and, to a lesser degree, conglomerates. Palaeo-wetland areas were common in the alluvial plain, represented by patches of tufas, stromatolites and clays. At present, the piedmont alluvial surface is preserved mainly on a dark brown soil formed at the top of Unit II. Unit III corresponds to a fluvial deposit overlying Unit II, and is defined by sands, silty clays and gravels, including several Later Stone Age (LSA) occurrences. Three fine-grained tephra levels are interbedded in Unit I (tuffs TBI and TA) and II (tuff CB), and are usually spatially-constrained and reworked. Argon/argon (40Ar/39Ar) dating from tuff TA, an ash deposit preserved in a palustrine environment, yielded an age of 0.212 ± 0.016 Ma (millions of years ago). This date places thetop of Unit I in the late Middle Pleistocene, with Acheulean sites below and above tuff TA. Regional correlations tentatively place the base of Unit I around the Early-Middle Pleistocene boundary, Unit II inthe late Middle Pleistocene and within the Late Pleistocene, and the LSA occurrences of Unit III in the LatePleistoceneeHolocene.

Millennial-scale sustainability of the Chesapeake Bay Native American oyster fishery

PubMed Central

Rick, Torben C.; Reeder-Myers, Leslie A.; Hofman, Courtney A.; Breitburg, Denise; Lockwood, Rowan; Henkes, Gregory; Kellogg, Lisa; Lowery, Darrin; Luckenbach, Mark W.; Mann, Roger; Ogburn, Matthew B.; Southworth, Melissa; Wah, John; Wesson, James; Hines, Anson H.

2016-01-01

Estuaries around the world are in a state of decline following decades or more of overfishing, pollution, and climate change. Oysters (Ostreidae), ecosystem engineers in many estuaries, influence water quality, construct habitat, and provide food for humans and wildlife. In North America’s Chesapeake Bay, once-thriving eastern oyster (Crassostrea virginica) populations have declined dramatically, making their restoration and conservation extremely challenging. Here we present data on oyster size and human harvest from Chesapeake Bay archaeological sites spanning ∼3,500 y of Native American, colonial, and historical occupation. We compare oysters from archaeological sites with Pleistocene oyster reefs that existed before human harvest, modern oyster reefs, and other records of human oyster harvest from around the world. Native American fisheries were focused on nearshore oysters and were likely harvested at a rate that was sustainable over centuries to millennia, despite changing Holocene climatic conditions and sea-level rise. These data document resilience in oyster populations under long-term Native American harvest, sea-level rise, and climate change; provide context for managing modern oyster fisheries in the Chesapeake Bay and elsewhere around the world; and demonstrate an interdisciplinary approach that can be applied broadly to other fisheries. PMID:27217572

Millennial-scale sustainability of the Chesapeake Bay Native American oyster fishery.

PubMed

Rick, Torben C; Reeder-Myers, Leslie A; Hofman, Courtney A; Breitburg, Denise; Lockwood, Rowan; Henkes, Gregory; Kellogg, Lisa; Lowery, Darrin; Luckenbach, Mark W; Mann, Roger; Ogburn, Matthew B; Southworth, Melissa; Wah, John; Wesson, James; Hines, Anson H

2016-06-07

Estuaries around the world are in a state of decline following decades or more of overfishing, pollution, and climate change. Oysters (Ostreidae), ecosystem engineers in many estuaries, influence water quality, construct habitat, and provide food for humans and wildlife. In North America's Chesapeake Bay, once-thriving eastern oyster (Crassostrea virginica) populations have declined dramatically, making their restoration and conservation extremely challenging. Here we present data on oyster size and human harvest from Chesapeake Bay archaeological sites spanning ∼3,500 y of Native American, colonial, and historical occupation. We compare oysters from archaeological sites with Pleistocene oyster reefs that existed before human harvest, modern oyster reefs, and other records of human oyster harvest from around the world. Native American fisheries were focused on nearshore oysters and were likely harvested at a rate that was sustainable over centuries to millennia, despite changing Holocene climatic conditions and sea-level rise. These data document resilience in oyster populations under long-term Native American harvest, sea-level rise, and climate change; provide context for managing modern oyster fisheries in the Chesapeake Bay and elsewhere around the world; and demonstrate an interdisciplinary approach that can be applied broadly to other fisheries.

Holocene aggradation of the Dry Tortugas coral reef ecosystem

USGS Publications Warehouse

Brock, J.C.; Palaseanu-Lovejoy, M.; Poore, R.Z.; Nayegandhi, A.; Wright, C.W.

2010-01-01

Radiometric age dating of reef cores acquired at the Dry Tortugas coral reef ecosystem (DTCRE) was merged with lidar topographic mapping to examine Holocene reef development linked to spatial variation in growth and erosion under the control of sea level. Analysis of variance of lidar topography confirmed the presence of three distinct terraces on all three major DTCRE banks (Loggerhead Bank, Garden Bank, and Pulaski Bank). Reef building on the middle terrace (T2) began atop Pleistocene edifices on Loggerhead Bank by 8.0 ka (thousands of years ago) and on Garden Bank by 7.2 ka at elevations of about −16.0 m and −11.9 m, respectively, relative to present mean sea level. Following this initiation at different elevations, T2 aggraded vertically on both banks at different rates during the early Holocene under foundering conditions until a highstand at 5.2 ka, resulting in a 2.21 m offset in present mean T2 elevation between these banks. Initiation of an upper terrace (T1) occurred on both Loggerhead Bank and Garden Bank in association with sea-level fall to a lowstand at near 4.8 ka. This upper terrace initiated on Garden Bank at about 5.0 ka and then grew upward at rate of 2.5 mm year−1 until approximately 3.8 ka. On Loggerhead Bank, the upper T1 terrace formed after 4.5 ka at a higher vertical aggradation rate of 4.1 mm year−1, but at a lower elevation than on Garden Bank. Terrace T1 aggraded on Loggerhead Bank below the elevation of lowstands during late Holocene sea-level oscillation, and consequently erosion on Loggerhead Bank was minimal and likely limited to the crest of the upper terrace. In contrast, after 3.8 ka terrace T1 on Garden Bank likely tracked sea level and consequently underwent erosion when sea level fell to second, third and fourth lowstands at 3.3, 1.1, and 0.3 ka.

Spatial and size-frequency distribution of Acropora (Cnidaria: Scleractinia) species in Chinchorro Bank, Mexican Caribbean: implications for management

NASA Astrophysics Data System (ADS)

Vega-Zepeda, A.; Hernández-Arana, H.; Carricart-Ganivet, J. P.

2007-09-01

The Mexican Government decreed Chinchorro Bank reef as a Biosphere Reserve in 1996. The aim of this study was to evaluate the spatial and size-frequency distribution of Acropora spp. in order to provide further knowledge and tools to enhance management. A field survey was conducted, within six regions, to locate and measure Acropora patches in the reef lagoon. Density, colony size and living tissue cover of Acropora colonies were evaluated using the line-intercept transect technique, combining direct observations and video transects. The results showed that Acropora spp. was preferentially distributed in the southern regions; where cover and density were high. Based on these results and considering that Acropora spp. produces landscape heterogeneity, which in turn generates shelter for other species, including some of considerable economic importance, then at least the South East region should be considered as a key area for Acropora species conservation, and should be included in the Chinchorro Bank management plan.

A Bayesian rupture model of the 2007 Mw 8.1 Solomon Islands earthquake in Southwest Pacific with coral reef displacement measurements

NASA Astrophysics Data System (ADS)

Chen, Ting; Luo, Haipeng; Furlong, Kevin P.

2017-05-01

On 1st April 2007 a Mw 8.1 megathrust earthquake occurred in the western Solomon Islands of the Southwest Pacific and generated a regional tsunami with run-up heights of up to 12 m. A Bayesian inversion model is constructed to derive fault dip angle and cumulative co-seismic and early post-seismic slip using coral reef displacement measurements, in which both data misfit and moment magnitude are used as constraints. Results show three shallow, high-slip patches concentrated along the trench from west of Ranongga Island to Rendova Island on a fault plane dipping 20°, and a maximum dip slip of 11.6 m beneath Ranongga Island. Considerable subsidence on Simbo Island outboard of the trench on the subducting plate is not well explained with this model, but may be related to the effects of afterslip and/or Simbo Island's location near the triple junction among the Australia, Woodlark and Pacific plates.

Encounter with mesoscale eddies enhances survival to settlement in larval coral reef fishes

PubMed Central

Shulzitski, Kathryn; Sponaugle, Su; Hauff, Martha; Walter, Kristen D.; Cowen, Robert K.

2016-01-01

Oceanographic features, such as eddies and fronts, enhance and concentrate productivity, generating high-quality patches that dispersive marine larvae may encounter in the plankton. Although broad-scale movement of larvae associated with these features can be captured in biophysical models, direct evidence of processes influencing survival within them, and subsequent effects on population replenishment, are unknown. We sequentially sampled cohorts of coral reef fishes in the plankton and nearshore juvenile habitats in the Straits of Florida and used otolith microstructure analysis to compare growth and size-at-age of larvae collected inside and outside of mesoscale eddies to those that survived to settlement. Larval habitat altered patterns of growth and selective mortality: Thalassoma bifasciatum and Cryptotomus roseus that encountered eddies in the plankton grew faster than larvae outside of eddies and likely experienced higher survival to settlement. During warm periods, T. bifasciatum residing outside of eddies in the oligotrophic Florida Current experienced high mortality and only the slowest growers survived early larval life. Such slow growth is advantageous in nutrient poor habitats when warm temperatures increase metabolic demands but is insufficient for survival beyond the larval stage because only fast-growing larvae successfully settled to reefs. Because larvae arriving to the Straits of Florida from distant sources must spend long periods of time outside of eddies, our results indicate that they have a survival disadvantage. High productivity features such as eddies not only enhance the survival of pelagic larvae, but also potentially increase the contribution of locally spawned larvae to reef populations. PMID:27274058

Geoacoustic Characterization of the Mud Drape at the New England Mud Patch

NASA Astrophysics Data System (ADS)

Reed, A. H.

2016-02-01

The New England Mud Patch is an extensive deposit of fine-grained sediments that extends from an area south of Cape Cod, MA to south of Montauk Point Long Island, NY out on the continental shelf in water depths of 60 to 90 meters. The mud patch has a remarkable accumulation of up to a 13 meter thick sequence of mud that overlays a transgressive surface of Pleistocene Age and then thins out on the periphery where surficial sediments convert from mud to sand and sand/gravel. The deposit likely accumulated in this region due to the coalescing of shelf currents that had oppositional flow. This work focuses on a section of the mud patch that is centered over the thickest portion of mud and extends east-west for 30 km and north south for 10 km. Gravity cores were collected throughout this region and the cores penetrated the upper 2-4 m of mud at 28 different sites with multiple cores collected in several locations. The mud thickness in these regions exceeded the core barrel length, therefore the cores did not penetrate into the basal sand sediment layer, a relict transgressional horizon, which displays prominently in the acoustic data for this selected region. These cores were evaluated for compressional sound speed (averaging 1480 m/s) and density (1580 kg/m3) and found to be largely homogeneous and similar throughout the study area. The largest source of inhomogeneity was due to dispersed shell hash and disarticulated bivalves, but these inclusions represent minor components in the total sediment volume. The overlying sediment that characterizes the New England Mud Patch can be readily classified as mud, silty mud, or sandy-silty mud. This fine-grained sediment deposit reflects upon the low-energy nature of the hydrodynamics within this region.

Paleoseawater density reconstruction and its implication for cold-water coral carbonate mounds in the northeast Atlantic through time

NASA Astrophysics Data System (ADS)

Rüggeberg, Andres; Flögel, Sascha; Dullo, Wolf-Christian; Raddatz, Jacek; Liebetrau, Volker

2016-03-01

Carbonate buildups and mounds are impressive biogenic structures throughout Earth history. In the recent NE Atlantic, cold-water coral (CWC) reefs form giant carbonate mounds of up to 300 m of elevation. The expansion of these coral carbonate mounds is paced by climatic changes during the past 2.7 Myr. Environmental control on their development is directly linked to controls on its main constructors, the reef-building CWCs. Seawater density has been identified as one of the main controlling parameter of CWC growth in the NE Atlantic. One possibility is the formation of a pycnocline above the carbonate mounds, which is increasing the hydrodynamic regime, supporting elevated food supply, and possibly facilitating the distribution of coral larvae. The potential to reconstruct past seawater densities from stable oxygen isotopes of benthic foraminifera has been further developed: a regional equation gives reliable results for three different settings, peak interglacials (e.g., Holocene), peak glacials (e.g., Last Glacial Maximum), and intermediate setting (between the two extremes). Seawater densities are reconstructed for two different NE Atlantic CWC carbonate mounds in the Porcupine Seabight indicating that the development of carbonate mounds is predominantly found at a seawater density range between 27.3 and 27.7 kg m-3 (σΘ notation). Comparable to recent conditions, we interpret the reconstructed density range as a pycnocline serving as boundary layer, on which currents develop, carrying nutrition and possibly coral larvae. The close correlation of CWC reef growth with reconstructed seawater densities through the Pleistocene highlights the importance of pycnoclines and intermediate water mass dynamics.

CO32- concentration and pCO2 thresholds for calcification and dissolution on the Molokai reef flat, Hawaii

USGS Publications Warehouse

Yates, K.K.; Halley, R.B.

2006-01-01

The severity of the impact of elevated atmospheric pCO2 to coral reef ecosystems depends, in part, on how sea-water pCO2 affects the balance between calcification and dissolution of carbonate sediments. Presently, there are insufficient published data that relate concentrations of pCO 2 and CO32- to in situ rates of reef calcification in natural settings to accurately predict the impact of elevated atmospheric pCO2 on calcification and dissolution processes. Rates of net calcification and dissolution, CO32- concentrations, and pCO2 were measured, in situ, on patch reefs, bare sand, and coral rubble on the Molokai reef flat in Hawaii. Rates of calcification ranged from 0.03 to 2.30 mmol CaCO3 m-2 h-1 and dissolution ranged from -0.05 to -3.3 mmol CaCO3 m-2 h-1. Calcification and dissolution varied diurnally with net calcification primarily occurring during the day and net dissolution occurring at night. These data were used to calculate threshold values for pCO2 and CO32- at which rates of calcification and dissolution are equivalent. Results indicate that calcification and dissolution are linearly correlated with both CO32- and pCO2. Threshold pCO2 and CO32- values for individual substrate types showed considerable variation. The average pCO2 threshold value for all substrate types was 654??195 ??atm and ranged from 467 to 1003 ??atm. The average CO32- threshold value was 152??24 ??mol kg-1, ranging from 113 to 184 ??mol kg-1. Ambient seawater measurements of pCO2 and CO32- indicate that CO32- and pCO2 threshold values for all substrate types were both exceeded, simultaneously, 13% of the time at present day atmospheric pCO2 concentrations. It is predicted that atmospheric pCO2 will exceed the average pCO2 threshold value for calcification and dissolution on the Molokai reef flat by the year 2100.

Optically stimulated luminescence age controls on late Pleistocene and Holocene coastal lithosomes, North Carolina, USA

USGS Publications Warehouse

Mallinson, D.; Burdette, K.; Mahan, S.; Brook, G.

2008-01-01

Luminescence ages from a variety of coastal features on the North Carolina Coastal Plain provide age control for shoreline formation and relative sea-level position during the late Pleistocene. A series of paleoshoreline ridges, dating to Marine Isotope Stage (MIS) 5a and MIS 3 have been defined. The Kitty Hawk beach ridges, on the modern Outer Banks, yield ages of 3 to 2??ka. Oxygen-isotope data are used to place these deposits in the context of global climate and sea-level change. The occurrence of MIS 5a and MIS 3 shorelines suggests that glacio-isostatic adjustment (GIA) of the study area is large (ca. 22 to 26??m), as suggested and modeled by other workers, and/or MIS 3 sea level was briefly higher than suggested by some coral reef studies. Correcting the shoreline elevations for GIA brings their elevation in line with other sea-level indicators. The age of the Kitty Hawk beach ridges places the Holocene shoreline well west of its present location at ca. 3 to 2??ka. The age of shoreline progradation is consistent with the ages of other beach ridge complexes in the southeast USA, suggesting some regionally contemporaneous forcing mechanism. ?? 2007 University of Washington.

Interaction between inorganic nutrients and organic matter in controlling coral reef communities in Glovers Reef Belize.

PubMed

McClanahan, T R; Steneck, R S; Pietri, D; Cokos, B; Jones, S

2005-05-01

We studied the responses of algae, corals, and small fish to elevated inorganic fertilizer, organic matter, and their combination over a 49-day summer period in cages that simulated the coral reef in the remote Glovers reef atoll, Belize. The addition of organic matter reduced while fertilization had no effect on the numbers of herbivorous damsel and parrotfishes. All measures of algal biomass were influenced by fertilization. The combined inorganic and organic enrichment produced the highest algal biomass, which is most likely due to the combined effect of higher nutrients and lower herbivory. The cover of turf and total algae were influenced by all treatments and their interactions and most strongly and positively influenced by fertilization followed by organic matter and the combination of organic matter and inorganic fertilizer. The inorganic and combined treatments were both dominated by two turf algae, Enteromorpha prolifera and Digenia simplex, while the nonfertilized treatments were dominated by brown frondose algae Lobophora variegata, Padina sanctae, and Dictyota cervicornis. The organic matter treatment had greater cover of P. sanctae and D. cervicornis than the untreated control, which was dominated by Lobophora variegata, also the dominant algae on the nearby patch reefs. Crustose corallines grew slowly ( approximately 2.5 mm/49 days) and were not influenced by the treatments when grown on vertical surfaces but decreased on horizontal coral plates in the combined organic matter and fertilization treatment. No mortality occurred for the two coral species that were added to the cages. Porites furcata darkened in the fertilized cages while there was a mix of paling and darkening for a small amount of the coral tissue of Diploria labyrinthiformes. Inorganic fertilization stimulates small filamentous turf algae and Symbiodinium living in coral but inhibits brown frondose algae. Organic matter inhibits small herbivorous fish, L. variegata, and encrusting coralline algae when growing on horizontal surfaces.

The Gulf of Carpentaria heated Torres Strait and the Northern Great Barrier Reef during the 2016 mass coral bleaching event

NASA Astrophysics Data System (ADS)

Wolanski, E.; Andutta, F.; Deleersnijder, E.; Li, Y.; Thomas, C. J.

2017-07-01

The 2015/16 ENSO event increased the temperature of waters surrounding northeast Australia to above 30 °C, with large patches of water reaching 32 °C, for over two months, which led to severe bleaching of corals of the Northern Great Barrier Reef (NGBR). This study provides evidence gained from remote-sensing data, oceanographic data and oceanographic modeling, that three factors caused this excessive heating, namely: 1) the shutdown of the North Queensland Coastal Current, which would otherwise have flushed and cooled the Northern Coral Sea and the NGBR through tidal mixing 2) the advection of warm (>30 °C) water from the Gulf of Carpentaria eastward through Torres Strait and then southward over the NGBR continental shelf, and 3) presumably local solar heating. The eastward flux of this warm water through Torres Strait was driven by a mean sea level difference on either side of the strait that in turn was controlled by the wind, which also generated the southward advection of this warm water onto the NGBR shelf. On the NGBR shelf, the residence time of this warm water was longer inshore than offshore, and this may explain the observed cross-shelf gradient of coral bleaching intensity. The fate of the Great Barrier Reef is thus controlled by the oceanography of surrounding seas.

Turbulence characteristics inferred from time-lagged satellite imagery of surface algae in a shallow tidal sea

NASA Astrophysics Data System (ADS)

Marmorino, George O.; Smith, Geoffrey B.; Miller, W. D.

2017-09-01

A pair of time-lagged satellite images of surface algae in the Great Barrier Reef lagoon is used to investigate characteristics of the horizontal velocity field at a spatial resolution as small as 4 m. A distinctive feature is the occurrence of surface patches that are relatively clear of algae and which grow in size. These patches are interpreted as resulting from the horizontally diverging motion associated with boils. The surface divergence in such boils can be as large as 0.01 s-1, as deduced directly from the imagery. Overall, root-mean-squared values of divergence, vorticity, and strain rate are 45, 58, and 170, respectively, when normalized by the Coriolis parameter. By observing the algae and its fluid environment simultaneously, the analysis thus provides a glimpse of how underlying hydrodynamic processes help shape the distribution of surface algae - under the calm winds that favor the formation of dense surface aggregations.

Coral color and depth drive symbiosis ecology of Montipora capitata in Kāne`ohe Bay, O`ahu, Hawai`i

NASA Astrophysics Data System (ADS)

Innis, T.; Cunning, R.; Ritson-Williams, R.; Wall, C. B.; Gates, R. D.

2018-06-01

Scleractinian corals form symbioses with diverse photosynthetic dinoflagellates (genus Symbiodinium) that confer varying levels of performance and stress tolerance to their hosts. Variation in thermal stress susceptibility (i.e., bleaching) among conspecific corals is linked to variability in symbiont community composition, yet factors driving heterogeneous symbiont associations within a population are poorly understood. To investigate potential drivers, we characterized Symbiodinium communities in Montipora capitata ( N = 707 colonies) across the biophysical regions, reef types, and depth range of Kāne`ohe Bay (Hawai`i, USA), where this dominant reef-builder associates with Symbiodinium spp. in clade C (C31) and/or D ( S. glynnii), and occurs as brown and orange color morphs. The distribution of these traits was primarily influenced by depth: orange, D-dominated colonies were more prevalent in shallow, high light environments (< 2 m), whereas brown, C-dominated colonies were more prevalent with increasing depth and light attenuation. Though either color morph could be dominated by either symbiont, brown colonies were almost exclusively C-dominated, while orange colonies were more likely to be D-dominated above 4.3 m, and C-dominated below, revealing a significant interaction between color morph and symbiosis ecology. The distribution of orange, D-dominated colonies extended deeper on patch reefs, where light penetrates deeper, compared to the more turbid, fringing reefs, further supporting light as the driver of these patterns. This work reveals that symbiont community variability may arise either from holobiont phenotypic plasticity or differential survival across light gradients, with implications for predicting coral bleaching responses and informing management applications such as selective breeding of robust corals.

Influence of prey body characteristics and performance on predator selection.

PubMed

Holmes, Thomas H; McCormick, Mark I

2009-03-01

At the time of settlement to the reef environment, coral reef fishes differ in a number of characteristics that may influence their survival during a predatory encounter. This study investigated the selective nature of predation by both a multi-species predator pool, and a single common predator (Pseudochromis fuscus), on the reef fish, Pomacentrus amboinensis. The study focused on the early post-settlement period of P. amboinensis, when mortality, and hence selection, is known to be highest. Correlations between nine different measures of body condition/performance were examined at the time of settlement, in order to elucidate the relationships between different traits. Single-predator (P. fuscus) choice trials were conducted in 57.4-l aquaria with respect to three different prey characteristics [standard length (SL), body weight and burst swimming speed], whilst multi-species trials were conducted on open patch reefs, manipulating prey body weight only. Relationships between the nine measures of condition/performance were generally poor, with the strongest correlations occurring between the morphological measures and within the performance measures. During aquaria trials, P. fuscus was found to be selective with respect to prey SL only, with larger individuals being selected significantly more often. Multi-species predator communities, however, were selective with respect to prey body weight, with heavier individuals being selected significantly more often than their lighter counterparts. Our results suggest that under controlled conditions, body length may be the most important prey characteristic influencing prey survival during predatory encounters with P. fuscus. In such cases, larger prey size may actually be a distinct disadvantage to survival. However, these relationships appear to be more complex under natural conditions, where the expression of prey characteristics, the selectivity fields of a number of different predators, their relative abundance, and the action of external environmental characteristics, may all influence which individuals survive.

Biogeochemical alteration effects on U/Th geochronology of Pleistocene corals, Penguin Bank, Molokai, Hawai`i

NASA Astrophysics Data System (ADS)

Herries, K.; Rubin, K. H.; Hellebrand, E.

2017-12-01

Meltwater Pulse 1a (MWP-1a) is a large, relatively fast sea level rise event that occurred during the last deglaciation. Critical questions remain about the exact timing of MWP-1a and can be answered using high precision geochronology. Coral reefs are able to yield ideal records of sea level and ocean changes during and after deposition. Glacial far-field fossilized coral reefs, such as the well-preserved Penguin Bank reef near Molokai, Hawai'i, provide understandings to past sea level events that are relatively unaffected by local deglacial sea level effects. Using uranium-thorium dating of pristine corals, we are able date sea level events to an error of ±25-50 years. However, most Penguin Bank coral samples have been biogeochemically disturbed by other mesophotic organisms either during their lifetime or after their death. In these samples, the main disturbances observed in hand specimen are (1) overgrowth by coralline algae, (2) bioerosion from boring organisms, (3) living organisms, like sponges, inside coral skeletons, and (4) discoloration due to detrital materials. These disturbances are capable of disrupting the concentration of U in the coral and/or δ 234U measured. Seawater alteration-sensitive ratios, such as Sr/Ca and Mg/Ca, act as a proxy for potential diagenetic effects on U distribution in the corals. U and Th isotopic data acquired on both pristine and altered parts of the corals are being used to determine the impacts of alteration in the measured ages. With these new data, it may be possible to derive a more accurate timing of MWP-1a and provide a more general method of determining the suitability of coral specimens for dating of the last deglaciation and past climate change.

Genetic Population Structure of the Coral Reef Sea Star Linckia laevigata in the Western Indian Ocean and Indo-West Pacific.

PubMed

Otwoma, Levy Michael; Kochzius, Marc

2016-01-01

The coral reef sea star Linckia laevigata is common on shallow water coral reefs of the Indo-West Pacific. Its large geographic distribution and comprehensive data from previous studies makes it suitable to examine genetic differentiation and connectivity over large geographical scales. Based on partial sequences of the mitochondrial cytochrome oxidase I (COI) gene this study investigates the genetic population structure and connectivity of L. laevigata in the Western Indian Ocean (WIO) and compares it to previous studies in the Indo-Malay-Philippines Archipelago (IMPA). A total of 138 samples were collected from nine locations in the WIO. AMOVA revealed a low but significant ΦST-value of 0.024 for the WIO populations. In the hierarchical AMOVA, the following grouping rejected the hypothesis of panmixia: (1) Kenya (Watamu, Mombasa, Diani) and Tanzanian Island populations (Misali and Jambiani) and (2) the rest of the WIO sites (mainland Tanzania and Madagascar; ΦCT = 0.03). The genetic population structure was stronger and more significant (ΦST = 0.13) in the comparative analysis of WIO and IMPA populations. Three clades were identified in the haplotype network. The strong genetic differentiation (ΦCT = 0.199, P < 0.001) suggests that Indo-West Pacific populations of L. laevigata can be grouped into four biogeographic regions: (1) WIO (2) Eastern Indian Ocean (3) IMPA and (4) Western Pacific. The findings of this study support the existence of a genetic break in the Indo-West Pacific consistent with the effect of lowered sea level during the Pleistocene, which limited gene flow between the Pacific and Indian Ocean.

Genetic Population Structure of the Coral Reef Sea Star Linckia laevigata in the Western Indian Ocean and Indo-West Pacific

PubMed Central

Kochzius, Marc

2016-01-01

The coral reef sea star Linckia laevigata is common on shallow water coral reefs of the Indo-West Pacific. Its large geographic distribution and comprehensive data from previous studies makes it suitable to examine genetic differentiation and connectivity over large geographical scales. Based on partial sequences of the mitochondrial cytochrome oxidase I (COI) gene this study investigates the genetic population structure and connectivity of L. laevigata in the Western Indian Ocean (WIO) and compares it to previous studies in the Indo-Malay-Philippines Archipelago (IMPA). A total of 138 samples were collected from nine locations in the WIO. AMOVA revealed a low but significant ΦST-value of 0.024 for the WIO populations. In the hierarchical AMOVA, the following grouping rejected the hypothesis of panmixia: (1) Kenya (Watamu, Mombasa, Diani) and Tanzanian Island populations (Misali and Jambiani) and (2) the rest of the WIO sites (mainland Tanzania and Madagascar; ΦCT = 0.03). The genetic population structure was stronger and more significant (ΦST = 0.13) in the comparative analysis of WIO and IMPA populations. Three clades were identified in the haplotype network. The strong genetic differentiation (ΦCT = 0.199, P < 0.001) suggests that Indo-West Pacific populations of L. laevigata can be grouped into four biogeographic regions: (1) WIO (2) Eastern Indian Ocean (3) IMPA and (4) Western Pacific. The findings of this study support the existence of a genetic break in the Indo-West Pacific consistent with the effect of lowered sea level during the Pleistocene, which limited gene flow between the Pacific and Indian Ocean. PMID:27798700

Sea-level history and tectonic uplift during the last-interglacial period (LIG): Inferred from the Bab al-Mandab coral reef terraces, southern Red Sea

NASA Astrophysics Data System (ADS)

Al-Mikhlafi, Ahmed Saif; Edwards, Lawrence R.; Cheng, Hai

2018-02-01

Results of U-series dating of late Pleistocene raised coral reef terraces from the Bab al-Mandab area, define two distinct groups: (1) well-preserved aragonitic fossil corals recorded from the Al-Hajaja terrace (Tr3) yield ages for last-interglacial period (LIG); and (2) calcitic fossil corals recovered from Perim Island terrace (Tr1) show varying degrees of U-series open system behavior and yield coral assemblage ages of LIG and older ages. Fossil corals from Tr1 are recrystallized corals, have anomalously high initial δ234U ranged from (152 ± 2‰ to 287 ± 7‰), corresponding to ages of ∼120 ka and ∼406 ka, respectively. Applying age reliability criteria on the current data suggest majority of the ages cannot be considered reliable and all are suspected for open system behavior associated with U loss/addition that significantly affects the 230Th/U ages. The diagenesis shown by these corals occurred probably due to extensive interaction of fossil corals with freshwater during the wet periods prevailed in southern Arabia coeval with the African monsoon, which led to U loss. Post-depositional U loss suggest (230Th/238U) increase, which shift the U-Th ages to unexpectedly higher levels as it is shown here. Measured elevation at the Al-Hajaja terrace (Tr3) is ∼4 ± 2 m above present sea level (apsl) consistent with eustatic sea level changes and indicates that the Bab al-Mandab area is stable at least since the LIG period. The Perim Island terrace (Tr1) is at elevation of 7 ± 2 m apsl; its reef yields diageneticaly-altered corals of multiple ages and cannot be used for sea level reconstructions.

Deep genetic divergences among Indo-Pacific populations of the coral reef sponge Leucetta chagosensis (Leucettidae): Founder effects, vicariance, or both?

PubMed Central

2008-01-01

Background An increasing number of studies demonstrate that genetic differentiation and speciation in the sea occur over much smaller spatial scales than previously appreciated given the wide distribution range of many morphologically defined coral reef invertebrate species and the presumed dispersal-enhancing qualities of ocean currents. However, knowledge about the processes that lead to population divergence and speciation is often lacking despite being essential for the understanding, conservation, and management of marine biodiversity. Sponges, a highly diverse, ecologically and economically important reef-invertebrate taxon, exhibit spatial trends in the Indo-West Pacific that are not universally reflected in other marine phyla. So far, however, processes generating those unexpected patterns are not understood. Results We unraveled the phylogeographic structure of the widespread Indo-Pacific coral reef sponge Leucetta chagosensis across its known geographic range using two nuclear markers: the rDNA internal transcribed spacers (ITS 1&2) and a fragment of the 28S gene, as well as the second intron of the ATP synthetase beta subunit-gene (ATPSb-iII). This enabled the detection of several deeply divergent clades congruent over both loci, one containing specimens from the Indian Ocean (Red Sea and Maldives), another one from the Philippines, and two other large and substructured NW Pacific and SW Pacific clades with an area of overlap in the Great Barrier Reef/Coral Sea. Reciprocally monophyletic populations were observed from the Philippines, Red Sea, Maldives, Japan, Samoa, and Polynesia, demonstrating long-standing isolation. Populations along the South Equatorial Current in the south-western Pacific showed isolation-by-distance effects. Overall, the results pointed towards stepping-stone dispersal with some putative long-distance exchange, consistent with expectations from low dispersal capabilities. Conclusion We argue that both founder and vicariance events during the late Pliocene and Pleistocene were responsible to varying degrees for generating the deep phylogeographic structure. This structure was perpetuated largely as a result of the life history of L. chagosensis, resulting in high levels of regional isolation. Reciprocally monophyletic populations constitute putative sibling (cryptic) species, while population para- and polyphyly may indicate incipient speciation processes. The genetic diversity and biodiversity of tropical Indo-Pacific sponges appears to be substantially underestimated since the high level of genetic divergence is not necessarily manifested at the morphological level. PMID:18221552

Deep genetic divergences among Indo-Pacific populations of the coral reef sponge Leucetta chagosensis (Leucettidae): founder effects, vicariance, or both?

PubMed

Wörheide, Gert; Epp, Laura S; Macis, Luciana

2008-01-26

An increasing number of studies demonstrate that genetic differentiation and speciation in the sea occur over much smaller spatial scales than previously appreciated given the wide distribution range of many morphologically defined coral reef invertebrate species and the presumed dispersal-enhancing qualities of ocean currents. However, knowledge about the processes that lead to population divergence and speciation is often lacking despite being essential for the understanding, conservation, and management of marine biodiversity. Sponges, a highly diverse, ecologically and economically important reef-invertebrate taxon, exhibit spatial trends in the Indo-West Pacific that are not universally reflected in other marine phyla. So far, however, processes generating those unexpected patterns are not understood. We unraveled the phylogeographic structure of the widespread Indo-Pacific coral reef sponge Leucetta chagosensis across its known geographic range using two nuclear markers: the rDNA internal transcribed spacers (ITS 1&2) and a fragment of the 28S gene, as well as the second intron of the ATP synthetase beta subunit-gene (ATPSb-iII). This enabled the detection of several deeply divergent clades congruent over both loci, one containing specimens from the Indian Ocean (Red Sea and Maldives), another one from the Philippines, and two other large and substructured NW Pacific and SW Pacific clades with an area of overlap in the Great Barrier Reef/Coral Sea. Reciprocally monophyletic populations were observed from the Philippines, Red Sea, Maldives, Japan, Samoa, and Polynesia, demonstrating long-standing isolation. Populations along the South Equatorial Current in the south-western Pacific showed isolation-by-distance effects. Overall, the results pointed towards stepping-stone dispersal with some putative long-distance exchange, consistent with expectations from low dispersal capabilities. We argue that both founder and vicariance events during the late Pliocene and Pleistocene were responsible to varying degrees for generating the deep phylogeographic structure. This structure was perpetuated largely as a result of the life history of L. chagosensis, resulting in high levels of regional isolation. Reciprocally monophyletic populations constitute putative sibling (cryptic) species, while population para- and polyphyly may indicate incipient speciation processes. The genetic diversity and biodiversity of tropical Indo-Pacific sponges appears to be substantially underestimated since the high level of genetic divergence is not necessarily manifested at the morphological level.

Upwellings mitigated Plio-Pleistocene heat stress for reef corals on the Florida platform (USA)

NASA Astrophysics Data System (ADS)

Brachert, T. C.; Reuter, M.; Krüger, S.; Kirkerowicz, J.; Klaus, J. S.

2015-10-01

The fast growing calcareous skeletons of zooxanthellate reef corals (z-corals) represent unique environmental proxy archives through their oxygen and carbon stable isotope composition (δ18O, δ13C). In addition, the accretion of the skeleton itself is ultimately linked to the environment and responds with variable growth rates (extension rate) and density to environmental changes. Here we present classical proxy data (δ18O, δ13C) in combination with calcification records from 15 massive z-corals. The z-corals were sampled from four interglacial units of the Florida carbonate platform (USA) dated approximately 3.2, 2.9, 1.8 and 1.2 Ma (middle Pliocene to early Pleistocene). The z-corals (Solenastrea, Orbicella, Porites) derive from unlithified shallow marine carbonates and were carefully screened for primary preservation suited for proxy analysis. We show that skeletal accretion was non-linear and responded with decreasing overall calcification rates (decreasing extension rate but increasing density) to warmer water temperatures. Under high annual water temperatures, inferred from subannually resolved δ18O data, skeletal bulk density was high, but extension rates and overall calcification rates were at a minimum (endmember scenario 1). Maximum skeletal density was reached during the summer season giving rise to a growth band of high density within the annually banded skeletons ("high density band", HDB). With low mean annual water temperatures (endmember scenario 2), bulk skeletal density was low but extension rates and calcification rates reached a maximum, and under these conditions the HDB formed during winter. Although surface water temperatures in the Western Atlantic warm pool during the interglacials of the late Neogene where ∼ 2 °C higher than they are in the present-day, intermittent upwelling of cool, nutrient rich water mitigated water temperatures off southwestern Florida in the middle of the Atlantic warm pool and created temporary refuges for z-coral growth. Based on the subannually resolved δ18O and δ13C records, the duration of the upwelling episodes causing the endmember 2 conditions was variable and lasted from a few years to a number of decades. The episodes of upwelling were interrupted by phases without upwelling (endmember 1) which lasted for at least a few years and led to high surface water temperatures. This variable environment is likely one of the reasons why the coral fauna is dominated by the eurytopic genus Solenastrea, also a species resistant to high turbidity. Over a period of ∼ 50 years, the oldest subannually resolved proxy record available (3.2 Ma) documents a persistent occurrence of the HDB during winter. In contrast, the HDB forms in summer in modern z-corals from the Florida reef tract. We suggest this difference to be the expression of a tendency towards decreasing upwelling since the middle Pliocene. The number of z-coral sclerochronological records for this time period is still, however, rather low and requires an improved resolution through data from additional time-slices. These data can contribute to predicting the effects of future ocean warming on z-coral health along the Florida reef tract.

A palynostratigraphic approach to the SW Anatolian molasse basin: Kale-Tavas molasse and Denizli molasse

NASA Astrophysics Data System (ADS)

Akgün, Funda; Sözbilir, Hasan

The study, explains stratigraphy of the Oligo-Miocene molasse around the Denizli province (SW Anatolia), based on the palynology which is also supported by the detailed mapping and correlation of the measured sections from the coal-bearing sequences of the molasse deposits. For this purpose, two huge depressions named as the Kale-Tavas molasse and Denizli molasse basins were examined. The Kale-Tavas molasse deposits has a basal unconformity with the underlying pre-Oligocene basement and begins with the Chattian Karadere and Mortuma formations which are covered unconformably by the Aquitanian Yenidere formation. An angular unconformity between the Chattian and the Burdigalian is only observed in the middle part of the basin, around Kale. In the Tavas section, the Aquitanian and the Burdigalian are absent. The Denizli molasse is characterized by Chattian-Aquitanian sequence consisting of distinctive sedimentary facies, alluvial fan and deltaic-shallow marine deposits with carbonate patch reefs. Palynostratigraphic studies, which have given the Chattian age, have been carried out from the coal lenses of alluvial fan and delta plain deposits. In addition to the palynological determinations, coral and foraminiferal content of the carbonate patch reefs which rest conformably on the coal-bearing sequences have yielded the Chattian-Aquitanian age. Two different palynomorph associations have been determined from the molasse deposits. The first palynomorph association which is established in the samples from the Sağdere and Mortuma formations, corresponds to the Chattian age, whilst the second is of the Aquitanian age. The Late Oligocene-Early Miocene which is claimed as the time of N-S-extensional tectonics in western Turkey, is related to the depositional time of the molasse sequences in the study area. Thus, the molasse is older than the basal deposits of the Gediz and Büyük Menderes grabens.

Marked annual coral bleaching resilience of an inshore patch reef in the Florida Keys: A nugget of hope, aberrance, or last man standing?

NASA Astrophysics Data System (ADS)

Gintert, Brooke E.; Manzello, Derek P.; Enochs, Ian C.; Kolodziej, Graham; Carlton, Renée; Gleason, Arthur C. R.; Gracias, Nuno

2018-06-01

Annual coral bleaching events, which are predicted to occur as early as the next decade in the Florida Keys, are expected to cause catastrophic coral mortality. Despite this, there is little field data on how Caribbean coral communities respond to annual thermal stress events. At Cheeca Rocks, an inshore patch reef near Islamorada, FL, the condition of 4234 coral colonies was followed over 2 yr of subsequent bleaching in 2014 and 2015, the two hottest summers on record for the Florida Keys. In 2014, this site experienced 7.7 degree heating weeks (DHW) and as a result 38.0% of corals bleached and an additional 36.6% were pale or partially bleached. In situ temperatures in summer of 2015 were even warmer, with the site experiencing 9.5 DHW. Despite the increased thermal stress in 2015, only 12.1% of corals were bleached in 2015, which was 3.1 times less than 2014. Partial mortality dropped from 17.6% of surveyed corals to 4.3% between 2014 and 2015, and total colony mortality declined from 3.4 to 1.9% between years. Total colony mortality was low over both years of coral bleaching with 94.7% of colonies surviving from 2014 to 2016. The reduction in bleaching severity and coral mortality associated with a second stronger thermal anomaly provides evidence that the response of Caribbean coral communities to annual bleaching is not strictly temperature dose dependent and that acclimatization responses may be possible even with short recovery periods. Whether the results from Cheeca Rocks represent an aberration or a true resilience potential is the subject of ongoing research.

Humans, water, and the colonization of Australia.

PubMed

Bird, Michael I; O'Grady, Damien; Ulm, Sean

2016-10-11

The Pleistocene global dispersal of modern humans required the transit of arid and semiarid regions where the distribution of potable water provided a primary constraint on dispersal pathways. Here, we provide a spatially explicit continental-scale assessment of the opportunities for Pleistocene human occupation of Australia, the driest inhabited continent on Earth. We establish the location and connectedness of persistent water in the landscape using the Australian Water Observations from Space dataset combined with the distribution of small permanent water bodies (springs, gnammas, native wells, waterholes, and rockholes). Results demonstrate a high degree of directed landscape connectivity during wet periods and a high density of permanent water points widely but unevenly distributed across the continental interior. A connected network representing the least-cost distance between water bodies and graded according to terrain cost shows that 84% of archaeological sites >30,000 y old are within 20 km of modern permanent water. We further show that multiple, well-watered routes into the semiarid and arid continental interior were available throughout the period of early human occupation. Depletion of high-ranked resources over time in these paleohydrological corridors potentially drove a wave of dispersal farther along well-watered routes to patches with higher foraging returns.

Humans, water, and the colonization of Australia

PubMed Central

O’Grady, Damien

2016-01-01

The Pleistocene global dispersal of modern humans required the transit of arid and semiarid regions where the distribution of potable water provided a primary constraint on dispersal pathways. Here, we provide a spatially explicit continental-scale assessment of the opportunities for Pleistocene human occupation of Australia, the driest inhabited continent on Earth. We establish the location and connectedness of persistent water in the landscape using the Australian Water Observations from Space dataset combined with the distribution of small permanent water bodies (springs, gnammas, native wells, waterholes, and rockholes). Results demonstrate a high degree of directed landscape connectivity during wet periods and a high density of permanent water points widely but unevenly distributed across the continental interior. A connected network representing the least-cost distance between water bodies and graded according to terrain cost shows that 84% of archaeological sites >30,000 y old are within 20 km of modern permanent water. We further show that multiple, well-watered routes into the semiarid and arid continental interior were available throughout the period of early human occupation. Depletion of high-ranked resources over time in these paleohydrological corridors potentially drove a wave of dispersal farther along well-watered routes to patches with higher foraging returns. PMID:27671630

Gene flow during glacial habitat shifts facilitates character displacement in a Neotropical flycatcher radiation.

PubMed

Chattopadhyay, Balaji; Garg, Kritika M; Gwee, Chyi Yin; Edwards, Scott V; Rheindt, Frank E

2017-09-01

Pleistocene climatic fluctuations are known to be an engine of biotic diversification at higher latitudes, but their impact on highly diverse tropical areas such as the Andes remains less well-documented. Specifically, while periods of global cooling may have led to fragmentation and differentiation at colder latitudes, they may - at the same time - have led to connectivity among insular patches of montane tropical habitat with unknown consequences on diversification. In the present study we utilized ~5.5 kb of DNA sequence data from eight nuclear loci and one mitochondrial gene alongside diagnostic morphological and bioacoustic markers to test the effects of Pleistocene climatic fluctuations on diversification in a complex of Andean tyrant-flycatchers of the genus Elaenia. Population genetic and phylogenetic approaches coupled with coalescent simulations demonstrated disparate levels of gene flow between the taxon chilensis and two parapatric Elaenia taxa predominantly during the last glacial period but not thereafter, possibly on account of downward shifts of montane forest habitat linking the populations of adjacent ridges. Additionally, morphological and bioacoustic analyses revealed a distinct pattern of character displacement in coloration and vocal traits between the two sympatric taxa albiceps and pallatangae, which were characterized by a lack of gene flow. Our study demonstrates that global periods of cooling are likely to have facilitated gene flow among Andean montane Elaenia flycatchers that are more isolated from one another during warm interglacial periods such as the present era. We also identify a hitherto overlooked case of plumage and vocal character displacement, underpinning the complexities of gene flow patterns caused by Pleistocene climate change across the Andes.

Ordinary kriging vs inverse distance weighting: spatial interpolation of the sessile community of Madagascar reef, Gulf of Mexico.

PubMed

Zarco-Perello, Salvador; Simões, Nuno

2017-01-01

Information about the distribution and abundance of the habitat-forming sessile organisms in marine ecosystems is of great importance for conservation and natural resource managers. Spatial interpolation methodologies can be useful to generate this information from in situ sampling points, especially in circumstances where remote sensing methodologies cannot be applied due to small-scale spatial variability of the natural communities and low light penetration in the water column. Interpolation methods are widely used in environmental sciences; however, published studies using these methodologies in coral reef science are scarce. We compared the accuracy of the two most commonly used interpolation methods in all disciplines, inverse distance weighting (IDW) and ordinary kriging (OK), to predict the distribution and abundance of hard corals, octocorals, macroalgae, sponges and zoantharians and identify hotspots of these habitat-forming organisms using data sampled at three different spatial scales (5, 10 and 20 m) in Madagascar reef, Gulf of Mexico. The deeper sandy environments of the leeward and windward regions of Madagascar reef were dominated by macroalgae and seconded by octocorals. However, the shallow rocky environments of the reef crest had the highest richness of habitat-forming groups of organisms; here, we registered high abundances of octocorals and macroalgae, with sponges, Millepora alcicornis and zoantharians dominating in some patches, creating high levels of habitat heterogeneity. IDW and OK generated similar maps of distribution for all the taxa; however, cross-validation tests showed that IDW outperformed OK in the prediction of their abundances. When the sampling distance was at 20 m, both interpolation techniques performed poorly, but as the sampling was done at shorter distances prediction accuracies increased, especially for IDW. OK had higher mean prediction errors and failed to correctly interpolate the highest abundance values measured in situ , except for macroalgae, whereas IDW had lower mean prediction errors and high correlations between predicted and measured values in all cases when sampling was every 5 m. The accurate spatial interpolations created using IDW allowed us to see the spatial variability of each taxa at a biological and spatial resolution that remote sensing would not have been able to produce. Our study sets the basis for further research projects and conservation management in Madagascar reef and encourages similar studies in the region and other parts of the world where remote sensing technologies are not suitable for use.

Ordinary kriging vs inverse distance weighting: spatial interpolation of the sessile community of Madagascar reef, Gulf of Mexico

PubMed Central

Simões, Nuno

2017-01-01

Information about the distribution and abundance of the habitat-forming sessile organisms in marine ecosystems is of great importance for conservation and natural resource managers. Spatial interpolation methodologies can be useful to generate this information from in situ sampling points, especially in circumstances where remote sensing methodologies cannot be applied due to small-scale spatial variability of the natural communities and low light penetration in the water column. Interpolation methods are widely used in environmental sciences; however, published studies using these methodologies in coral reef science are scarce. We compared the accuracy of the two most commonly used interpolation methods in all disciplines, inverse distance weighting (IDW) and ordinary kriging (OK), to predict the distribution and abundance of hard corals, octocorals, macroalgae, sponges and zoantharians and identify hotspots of these habitat-forming organisms using data sampled at three different spatial scales (5, 10 and 20 m) in Madagascar reef, Gulf of Mexico. The deeper sandy environments of the leeward and windward regions of Madagascar reef were dominated by macroalgae and seconded by octocorals. However, the shallow rocky environments of the reef crest had the highest richness of habitat-forming groups of organisms; here, we registered high abundances of octocorals and macroalgae, with sponges, Millepora alcicornis and zoantharians dominating in some patches, creating high levels of habitat heterogeneity. IDW and OK generated similar maps of distribution for all the taxa; however, cross-validation tests showed that IDW outperformed OK in the prediction of their abundances. When the sampling distance was at 20 m, both interpolation techniques performed poorly, but as the sampling was done at shorter distances prediction accuracies increased, especially for IDW. OK had higher mean prediction errors and failed to correctly interpolate the highest abundance values measured in situ, except for macroalgae, whereas IDW had lower mean prediction errors and high correlations between predicted and measured values in all cases when sampling was every 5 m. The accurate spatial interpolations created using IDW allowed us to see the spatial variability of each taxa at a biological and spatial resolution that remote sensing would not have been able to produce. Our study sets the basis for further research projects and conservation management in Madagascar reef and encourages similar studies in the region and other parts of the world where remote sensing technologies are not suitable for use. PMID:29204321

Order of arrival affects competition in two reef fishes.

PubMed

Geange, Shane W; Stier, Adrian C

2009-10-01

Many communities experience repeated periods of colonization due to seasonally regenerating habitats or pulsed arrival of young-of-year. When an individual's persistence in a community depends upon the strength of competitive interactions, changes in the timing of arrival relative to the arrival of a competitor can modify competitive strength and, ultimately, establishment in the community. We investigated whether the strength of intracohort competitive interactions between recent settlers of the reef fishes Thalassoma hardwicke and T. quinquevittatum are dependent on the sequence and temporal separation of their arrival into communities. To achieve this, we manipulated the sequence and timing of arrival of each species onto experimental patch reefs by simulating settlement pulses and monitoring survival and aggressive interactions. Both species survived best in the absence of competitors, but when competitors were present, they did best when they arrived at the same time. Survival declined as each species entered the community progressively later than its competitor and as aggression by its competitor increased. Intraspecific effects of resident T. hardwicke were similar to interspecific effects. This study shows that the strength of competition depends not only on the identity of competitors, but also on the sequence and timing of their interactions, suggesting that when examining interaction strengths, it is important to identify temporal variability in the direction and magnitude of their effects. Furthermore, our findings provide empirical evidence for the importance of competitive lotteries in the maintenance of species diversity in demographically open marine systems.

The ploys of sex: relationships among the mode of reproduction, body size and habitats of coral-reef brittlestars

NASA Astrophysics Data System (ADS)

Hendler, Gordon; Littman, Barbara S.

1986-08-01

Observations were made of 33 species of brittlestars (3980 specimens) from specific substrata collected in four zones on the Belize Barrier Reef, Caribbean Sea. The body size of most species of brittlestars with planktonic larvae differs significantly among different substrata. Generally, individuals from the calcareous alga Halimeda opuntia are smallest, those found in corals ( Porites porites, Madracis mirabilis, and Agaricia tenuifolia) are larger, and those from coral rubble are the largest. This suggests that brittlestars with planktonic larvae move to new microhabitats as they grow. In contrast, most brooding and fissiparous species are relatively small and their size-distributions are similar among all substrata. Halimeda harbours denser concentrations of brittlestars and more small and juvenile individuals than the other substrata. Juveniles of the brooding and fissiparous species are most common in Halimeda on the Back Reef whereas juveniles developing from planktonic larvae are most common in Halimeda patches in deeper water. Fissiparity and brooding may be means for individuals (genomes) of small, apomictic species to reach large size (and correspondingly high fecundities) in patchy microhabitats that select for small body sizes. Small brittlestar species and juveniles are most numerous in the microhabitats called refuge-substrata, such as Halimeda, which may repel predators and reduce environmental stress. Whether young brittlestars are concentrated in refuge-substrata through settlement behavior, migration, or differential survival remains unknown. Experiments revealed that coral polyps kill small brittlestars, perhaps accounting for the rarity of small and juvenile brittlestars in coral substrata.

Age of overwash and rate of relative sea-level rise inferred from detrital heads and microatolls of medieval corals at Anegada, British Virgin Islands

NASA Astrophysics Data System (ADS)

Jennifer, W.; Feuillet, N.; Robert, H.; Brian, A.; Ten Brink, U. S.; Deschamps, P.; Tuttle, M. P.; Wei, Y.; Fuentes, Z.

2012-12-01

Coral boulders deposited on Anegada, an island 120 km south of the Puerto Rico Trench, record overwash dated to AD 1200-1450 and relative sea-level changes that preceded it. Composed largely of Pleistocene limestone, Anegada is less than 8 m above sea level and is fringed on the north and east by a coral reef where Atlantic Ocean waves break. The lowest parts of the island were washed over from the north in AD 1650-1800, as judged from landforms and deposits reported previously (doi:10.1007/s11069-010-9622-6). The coral boulders indicate overwash of higher elevation and earlier age. The boulders were apparently torn from the adjacent reef by a tsunami of nearby origin, as inferred in companion abstracts on geology and modeling. We found the corals scattered in five areas inland from the north shore. Two of the areas show solitary coral heads 1500 m from the reef. The boulders are more numerous in the three other areas, where they are up to 500-700 m from the reef and up to 4 m above sea level. Some were transported over beach ridges or through breaches cut into them. Others are hundreds of meters inland from a modern storm berm. Most rest on the Pleistocene limestone. Many are overturned. Most are broken but few are whole. The largest measured diameter is 2 m and the greatest measured height is 1 m. Most of the boulders are of the brain coral Diploria strigosa, but smaller Porites asteroides and Montastrea annularis are also present. Some of the D. strigosa retain the rounded shape typical of living heads and are dimpled with holes perhaps left by feather-duster worms. The preservation of these features suggests that many of the boulders came ashore alive. We avoided dating a head that shows field evidence for death before transport; an erosional surface cuts across its youngest growth bands and is covered with the remains of encrusting marine organisms. Among the 18 coral boulders dated, 13 form a young group with ages in the range 890±25 to 1020±25 14C yr BP, four form an older group with ages between 1150±35 and 1240±20 14C yr BP, and one is an outlier at 1960±40 14C yr BP. In three of the areas, including those farthest from the reef, all the dated heads are in the young group. The other two areas show a mix of young and older ages. The outlier age was measured on an eroded fragment of the small brain coral Manicina areolata. The ages of the young group correspond to AD 1200-1450 if the local shift in marine-reservoir age (ΔR) was between 0 and -200 14C yr. The mix of ages and degrees of preservation can thus be explained by a single overwash event in AD 1200-1450 that dislodged and brought ashore both live and dead corals. Of the fifty coral boulders observed, at least five have a microatoll shape indicative of outward and upward growth limited by lowest tide level. All five are D. strigosa. Their cup-shaped morphology suggests that relative sea level (RSL) was rising before they died. X-radiography of one of them shows a growth rate of 8 mm/yr and a RSL rise averaging 3-4 mm/yr during the last 70 years before death. This submergence was interrupted by a few centimeter-scale steps of emergence. [Companion abstracts: Atwater, Wei

Cryptic effects of habitat declines: coral-associated fishes avoid coral-seaweed interactions due to visual and chemical cues.

PubMed

Brooker, Rohan M; Brandl, Simon J; Dixson, Danielle L

2016-01-04

Seaweed-dominated coral reefs are becoming increasingly common as environmental conditions shift away from those required by corals and toward those ideal for rampant seaweed growth. How coral-associated organisms respond to seaweed will not only impact their fate following environmental change but potentially also the trajectories of the coral communities on which they rely. However, behavioral responses by coral-associated organisms to seaweeds are poorly understood. This study examined interactions between a guild of obligate and opportunistic coral-feeding butterflyfishes (Chaetodontidae) and scleractinian corals to determine whether fishes continue to interact with corals in contact with seaweed or if they are avoided. Under natural conditions, all species interacted almost exclusively with seaweed-free corals. In a controlled patch reef experiment, fishes avoided corals in physical contact with seaweed, irrespective of dietary preferences. When visual seaweed cues were removed, butterflyfish continued to avoid corals that had been in contact with the allelopathic Galaxaura filamentosa, suggesting that chemical cues produced by coral-seaweed interactions are repellent. These findings suggest that, due to deleterious visual and chemical cues produced by coral-seaweed interactions, coral-associated organisms may struggle to locate resources as seaweed-free corals decline in abundance.

Revised Stratigraphy of The Nallıhan-Dudaş (Beypazarı) Area and Significance of the Campanian-Maastrichtian Reef Occurrences Based on the Foraminiferal and Rudist Data

NASA Astrophysics Data System (ADS)

Görmüş, Muhittin; Sami Us, Muhammed; Özer, Sacit; Tekin, Erdoǧan; Akpınar, Serap; Kabakcı, Büşra

2016-04-01

Transgressive to regressive succession of the Cretaceous Period and Cretaceous Paleogene boundary from the Nallıhan-Beypazarı area have significant data to interpret the past geological history of northwestern Turkey. In the literature, main scientific differences are seen on the formation/lithodem names, their ages, contact relations and environmental interpretations. In the study, a revision has been made for a proper stratigraphy of the area. For the revised stratigraphy, the obtained results from our field and laboratory works and the literature information were used. The following stratigraphy were established from basement to top: the Permo-Triassic aged Sekli metamorphics, Jurassic to lower Cretaceous Soǧukçam formation, Campanian to Maastrichtian aged Dereköy Group-Haremiköy conglomerates, Çeǧiköy reefs, Nardin formation (Seben formation), Taraklı formation; the Paleogene aged Kızılçay group including Kızılbayır formation, Karaköy volcanoclastics, Selvipınar limestone, the Miocene-Pliocene terrestrial sediments, Çoraklar formation, Hırka formation, Akpınar formation, Çayırhan formation, Teke volkanics, Bozbelen formation, Kirmir formation. The main unconformities are between Jura and Campanian, Maastrichtian and Paleogene, Eocene and Miocene times. Among the geological units, the Çeǧiköy reefs having rich rudist fauna overlie the Haremiköy conglomerates in both sides at the north-Yeşilyurt village and at the south-Gökçeöz village. Another outcrop, Emincik is between two mentioned villages. Biohermal reefs mainly includes very rich rudists up to 40 centimetres in size around the Yeşilköy such as: Pironaea polystyla, Vaccinites loftusi, Hippurites sublaevis. Larger foraminifera Orbitoides medius, O. apiculatus, Siderolites calcitrapoides, Pseodosiderolites vidali are also common in the fore reef areas. Around the Gökçeöz at the south part, the identified rudists are as follows: Vaccinites sp., Hippurites aff. sublaevis, Pironaea polystyla Joufia cf. reticulata, Hippuritella variabilis. In this location, smaller rudists are at the bottom, larger ones are at the top of the biostromal limestones. The first reefal occurrences are interpreted as local fringing type reefs. The reefs around the Emincik are the second occurrences of reefs. This was interpreted as patch reefs. Rudist fauna are less than the other locations and it occurs above the orbitoid rich siliciclastics. Extinction of rudists is at the end of middle Maastrichtian due to paleoenvironmental changes and open marine conditions. Transgressive succession continuous with regressive succession. The Taraklı Formation siliciclastics including rich Orbitoides apiculatus and O. gruenbachensis. The location is also important for the mass larger foraminifera-Orbitoides extinction on the Cretaceous/Paleogene boundary. Terrestrial siliciclastics overlies the very shallow marine Maastrichtian siliciclastics. ACKNOWLADGEMENT: The authors thanks to Ankara University Scientific Research Projects Coordination Unit (BAP) for the financial support on the project 13B4343014.

The Pipe Creek Sinkhole biota, a diverse late tertiary continental fossil assemblage from Grant County, Indiana

USGS Publications Warehouse

Farlow, J.O.; Sunderman, J.A.; Havens, J.J.; Swinehart, A.L.; Holman, J.A.; Richards, R.L.; Miller, N.G.; Martin, R.A.; Hunt, R.M.; Storrs, G.W.; Curry, B. Brandon; Fluegeman, R.H.; Dawson, M.; Flint, M.E.T.

2001-01-01

Quarrying in east-central Indiana has uncovered richly fossiliferous unconsolidated sediment buried beneath Pleistocene glacial till. The fossiliferous layer is part of a sedimentary deposit that accumulated in a sinkhole developed in the limestone flank beds of a Paleozoic reef. Plant and animal (mostly vertebrate) remains are abundant in the fossil assemblage. Plants are represented by a diversity of terrestrial and wetland forms, all of extant species. The vertebrate assemblage (here designated the Pipe Creek Sinkhole local fauna) is dominated by frogs and pond turtles, but fishes, birds; snakes and small and large mammals are also present; both extinct and extant taxa are represented. The mammalian assemblage indicates an early Pliocene age (latest Hemphillian or earliest Blancan North American Land Mammal Age). This is the first Tertiary continental biota discovered in the interior of the eastern half of North America.

Radar, an optimum remote-sensing tool for detailed plate tectonic analysis and its application to hydrocarbon exploration (an example in Irian Jaya Indonesia)

NASA Technical Reports Server (NTRS)

Froidevaux, C. M.

1980-01-01

Geometric, geomorphic, and structural information derived from the examination of radar imagery and combined with geologic and geophysical evidences strongly indicates that Salawati Island was attached to the Irian Jaya mainland during the time of Miocene lower Pliocene reef development, and that it was separated in middle Pliocene to Pleistocene time, opening the Sele Strait rift zone. The island moved 17.5 km southwestward after an initial counterclockwise rotation of 13 deg. The rift zone is subsequent to the creation of the large left lateral Sorong fault zone that is part of the transitional area separating the westward-moving Pacific plate from the relatively stable Australian plate. The motion was triggered during a widespread magmatic intrusion of the Sorong fault zone, when the basalt infiltrated a right lateral fault system in the area of the present Sele Strait.

Malacological and palynological evidence of the Lower Pleistocene cold phase at the Carpathian Foothills (Southern Poland)

NASA Astrophysics Data System (ADS)

Stworzewicz, Ewa; Granoszewski, Wojciech; Wójcik, Antoni

2012-05-01

Early Pleistocene sediments bearing gastropod shells and pollen flora were found during coring at Jawornik (South Poland) at a depth interval of 54.30-39.00 m, beneath the oldest till of the Carpathians. Thirteen land-snail taxa identified in 55 samples of the core formed two molluscan assemblages. In the bottom part, typical cold-loving snails were found (e.g. Vallonia tenuilabris, Pupilla loessica, Vertigo genesii, Columella columella), whereas in the upper part only Semilimax kotulae was present. The succession of molluscan assemblages may suggest that at the site of deposition, after a phase of tundra, steppe-tundra or forest-steppe landscape with patches of wet habitats in cold climate, the climate became slightly milder but still cool, favourable to the spreading of boreal (coniferous) woodlands. Pollen analysis was performed only for the upper part of the profile. The pollen spectra, besides the Tertiary (Miocene) elements, contained sporomorphs common to the Tertiary and Quaternary floras. Among them, the highest percentages were noted for Pinus haploxylon t., P. diploxylon t., Picea, Quercus, Ericaceae, Betula, and Ulmus. The fact that the sediments with organic remains underlie the oldest Scandinavian till suggests that they are older than the oldest glacial unit of the South-Polish Complex (Narevian = Menapian, ~ 1.2 Ma).

Age estimates for the late quaternary high sea-stands

NASA Astrophysics Data System (ADS)

Smart, Peter L.; Richards, David A.

A database of more than 300 published alpha-counted uranium-series ages has been compiled for coral reef terraces formed by Late Pleistocene high sea-stands. The database was screened to eliminate unreliable age estimates ( {230Th }/{232Th } < 20, calcite > 5%) and those without quoted without quoted errors, and a distributed error frequency curve was produced. This curve can be considered as a finite mixture model comprising k component normal distributions each with a weighting α. By using an expectation maximising algorithm, the mean and standard deviation of the component distributions, each corresponding to a high sea level event, were estimated. Eight high sea-stands with mean and standard deviations of 129.0 ± 33.0, 123.0 ± 13.0, 102.5 ± 2.0, 81.5 ± 5.0, 61.5 ± 6.0, 50.0 ± 1.0, 40.5 ± 5.0 and 33.0 ± 2.5 ka were resolved. The standard deviations are generally larger than the values quoted for individual age estimates. Whilst this may be due to diagenetic effects, especially for the older corals, it is argued that in many cases geological evidence clearly indicates that the high stands are multiple events, often not resolvable at sites with low rates of uplift. The uranium-series dated coral-reef terrace chronology shows good agreement with independent chronologies derived for Antarctic ice cores, although the resolution for the latter is better. Agreement with orbitally-tuned deep-sea core records is also good, but it is argued that Isotope Stage 5e is not a single event, as recorded in the cores, but a multiple event spanning some 12 ka. The much earlier age for Isotope Stage 5e given by Winograd et al. (1988) is not supported by the coral reef data, but further mass-spectrometric uranium-series dating is needed to permit better chronological resolution.

Pleistocene and Holocene Iberian flora: a complete picture and review

NASA Astrophysics Data System (ADS)

González Sampériz, Penélope

2010-05-01

A detailed analysis of the location and composition of Iberian vegetation types during the whole Pleistocene and Holocene periods shows a complex patched landscape with persistence of different types of ecosystems, even during glacial times. In addition, recent, high-resolution palaeoecological records are changing the traditional picture of post-glacial vegetation succession in the Iberian Peninsula. The main available charcoal and pollen sequences include, coniferous and deciduous forest, steppes, shrublands, savannahs and glacial refugia during the Pleistocene for Meso-thermophytes (phytodiversity reservoirs), in different proportions. This panorama suggests an environmental complexity that relates biotic responses to climate changes forced by Milankovitch cycles, suborbital forcings and by the latitudinal and physiographic particularities of the Iberian Peninsula. Thus, many factors are critical in the course of vegetational developments and strong regional differences are observed since the Early Pleistocene. Currently, the flora of Iberia is located in two biogeographical/climatic regions: the Eurosiberian and the Mediterranean. The first one includes northern and northwestern areas of the peninsula, where post-glacial responses of vegetation are very similar to Central Europe, although with some particularities due to its proximity to both the Atlantic Ocean and the Mediterranean region. The second one comprises the main territory of Iberia and shows more complex patterns and singularities, now and in the past. Steppe landscapes dominated extensive areas over all the territory during the cold spells of the Quaternary, especially during the Late Pleistocene up to the Last Glacial Maximum, but differences in composition of the dominant taxa (Compositae versus Artemisia) are observed since the Early Pleistocene, probably related to moisture regional gradients. Coastal shelves and intramountainous valleys, even in continental areas, are spots of floristic diversity and nuclei of population expansion during climatic ameliorations of the Pleistocene. The floristic composition, location and structure of glacial tree populations and communities may have been a primary control on these developments and on the origin and composition of Holocene scenarios. Refugial populations would have been a source, but not the only one, for the early Lateglacial oak expansions for example. From Middle to Late Holocene, inertial, resilient, and rapid responses of vegetation to climatic change are described, any time with regional and local differences. The role of fire, pastoralism, agriculture and other anthropogenic disturbances such as mining during the Copper, Bronze, Iberic, and Roman times must be also considered as an important factor of the current vegetation distribution. In fact, the Iberian Peninsula constitutes a territory where climatic, geological, biogeographical and historical conditions have converged to produce environmental heterogeneity, large biological diversity and ecosystem richness. A note of singularity: in comparison with other Mediterranean peninsulas, Iberia was, doubtless, particularly suitable for the survival and permanence of sclerophyllous elements of any kind (including Ibero-Maghrebian scrubs such as Maytenus, Periploca, Ziziphus,Withania, Lycium, and Calicotome), currently, during the Holocene, and even during glacial stages of the Pleistocene. However, no macro-remains of these taxa have been documented until Late Holocene chronologies, but the survival of other thermophilous species, such as Olea, reveals the existence of glacial refugia in the southernmost areas of Iberia. Over all, and dealing with plant species, the Iberian Peninsula is a land of survival.

A new model evaluating Holocene sediment dynamics: Insights from a mixed carbonate-siliciclastic lagoon (Bora Bora, Society Islands, French Polynesia, South Pacific)

NASA Astrophysics Data System (ADS)

Isaack, Anja; Gischler, Eberhard; Hudson, J. Harold; Anselmetti, Flavio S.; Lohner, Andreas; Vogel, Hendrik; Garbode, Eva; Camoin, Gilbert F.

2016-08-01

Mixed carbonate-siliciclastic lagoons of barrier reefs provide great potential as sedimentary archives focusing on paleoenvironmental and paleoclimatic changes as well as on event deposition. Sediment sources include lagoonal carbonate production, the marginal reef and the volcanic hinterland. Mixed carbonate-siliciclastic continent-attached coastal lagoons have been intensively studied, however, their isolated oceanic counterparts have been widely disregarded. Here, we present a new model of Holocene sediment dynamics in the barrier-reef lagoon of Bora Bora based on sedimentological, paleontological, geochronological and geochemical data. The lagoonal succession started with a Pleistocene soil representing the Lowstand Systems Tract. As the rising Holocene sea inundated the carbonate platform, peat accumulated locally 10,650-9400 years BP. Mixed carbonate-siliciclastic sedimentation started ca. 8700-5500 years BP and represents the Transgressive Systems Tract. During that time, sediments were characterized by relatively coarse grain size and contained high amounts of terrestrial material from the volcanic hinterland as well as carbonate sediments mainly produced within the lagoon. Siliciclastic content decreases throughout the Holocene. After the rising sea had reached its modern level, sand aprons formed between reef crest and lagoon creating transport pathways for reef-derived material leading to carbonate-dominated sedimentation ca. 6000-3000 years BP during the Highstand Systems Tract. However, mainly fine material was transported and accumulated in the lagoon while coarser grains were retained on the prograding sand apron. From ca. 4500-500 years BP, significant variations in grain-size, total organic carbon as indicator for primary productivity, Ca and Cl element intensities as qualitative indicators for carbonate availability and lagoonal salinity are seen. Such patterns could indicate event (re-)deposition and correlate with contemporaneous event deposits found in the lagoon of nearby Tahaa, which are supposed to be induced by elevated cyclone activity. Correspondingly, enhanced erosion and run-off from the volcanic hinterland as well as lower lagoonal salinity would be associated with intense rainfall during repeated cyclone landfall. Increased amounts of coarse-grained sediment from marginal reef areas would be transported into the lagoon. However, Ti/Ca and Fe/Ca ratios as proxies for terrigenous sediment delivery have incessantly declined since the mid-Holocene. Also, benthic foraminiferal faunas do not validate reef-to-lagoon transport of sediment. Alternatively, the apparent onset of higher hydrodynamic energy conditions can be explained by more permanent southeast trade winds and higher-than-present sea level, which are supposed for the mid-late Holocene in the south Pacific. Sustained winds would have flushed higher amounts of open ocean water into the lagoon enhancing primary productivity and the amount of pelagic organisms within the lagoon while lowering lagoonal salinity. We propose the shift towards coarser-grained sedimentation patterns during the mid-late Holocene to reflect sediment-load shedding of sand aprons due to oversteepening of slopes at sand apron/lagoon edges during times of stronger trades and higher-than-present sea level of the Highstand Systems Tract, which led to redeposition of sediment even within the lagoon center. Modern conditions including a sea-level fall to modern level were reached ca. 1000 years BP, and lagoonal infill has been determined to a large part by fine-grained carbonate-dominated sediments produced within the lagoon and derived from the marignal reef. Infill of lagoonal accommodation space via sand aprons is estimated to be up to six times higher than infill by lagoonal background sedimentation and emphasizes the importance of the progradation of sand aprons. Contrary to the commonly supposed assumption that coarse-grained sediment layers within fine-grained lagoonal successions represent overwash events induced by storms or periods of higher storm activity, we postulate a new model of long-term lagoonal sediment dynamics including sea level, climatic change and geomorphological variation of the barrier reef lagoon.

Interactive effects of three pervasive marine stressors in a post-disturbance coral reef

NASA Astrophysics Data System (ADS)

Gil, Michael A.; Goldenberg, Silvan U.; Ly Thai Bach, Anne; Mills, Suzanne C.; Claudet, Joachim

2016-12-01

Ecosystems are commonly affected by natural, episodic disturbances that can abruptly and drastically alter communities. Although it has been shown that resilient ecosystems can eventually recover to pre-disturbed states, the extent to which communities in early stages of recovery could be affected by multiple anthropogenic stressors is poorly understood. Pervasive and rising anthropogenic stressors in coastal marine systems that could interactively affect the recovery of these systems following natural disturbances include high sedimentation, nutrient enrichment, and overfishing. Using a 6-month field experiment, we examined the effects of all combinations of these three stressors on key functional groups in the benthic community growing on simulated, post-disturbance reef patches within a system recovering from large-scale natural disturbances (corallivorous seastar outbreak and cyclone). Our study revealed that sedimentation, nutrient enrichment, and overfishing (simulated using exclusion cages) interactively affected coral survival and algal growth, with taxon-specific effects at multiple scales. First, our treatments affected corals and algae differently, with sedimentation being more detrimental to macroalgal growth but less detrimental to coral ( Porites rus) survival in caged plots, driving significant interactions between sedimentation and caging for both taxa. We also observed distinct responses between coral species and between algal functional groups, with the most extensive responses from algal turf biomass, for which sedimentation suppressed the synergistic (positive) combined effect of nutrient enrichment and caging. Our findings suggest that different combinations of ubiquitous anthropogenic stressors, related to either sea- or land-based activities, interactively influence community recovery from disturbance and may alter species compositions in the resulting community. Our findings further suggest that anthropogenic stressors could promote further degradation of coral reefs following natural disturbances by inhibiting recovery to coral-dominated states that provide vital ecosystem services to coastal populations worldwide.

Uniting paradigms of connectivity in marine ecology.

PubMed

Brown, Christopher J; Harborne, Alastair R; Paris, Claire B; Mumby, Peter J

2016-09-01

The connectivity of marine organisms among habitat patches has been dominated by two independent paradigms with distinct conservation strategies. One paradigm is the dispersal of larvae on ocean currents, which suggests networks of marine reserves. The other is the demersal migration of animals from nursery to adult habitats, requiring the conservation of connected ecosystem corridors. Here, we suggest that a common driver, wave exposure, links larval and demersal connectivity across the seascape. To study the effect of linked connectivities on fish abundance at reefs, we parameterize a demographic model for The Bahamas seascape using maps of habitats, empirically forced models of wave exposure and spatially realistic three-dimensional hydrological models of larval dispersal. The integrated empirical-modeling approach enabled us to study linked connectivity on a scale not currently possible by purely empirical studies. We find sheltered environments not only provide greater nursery habitat for juvenile fish but larvae spawned on adjacent reefs have higher retention, thereby creating a synergistic increase in fish abundance. Uniting connectivity paradigms to consider all life stages simultaneously can help explain the evolution of nursery habitat use and simplifies conservation advice: Reserves in sheltered environments have desirable characteristics for biodiversity conservation and can support local fisheries through adult spillover. © 2016 by the Ecological Society of America.

Expanding the Symbiodinium (Dinophyceae, Suessiales) Toolkit Through Protoplast Technology.

PubMed

Levin, Rachel A; Suggett, David J; Nitschke, Matthew R; van Oppen, Madeleine J H; Steinberg, Peter D

2017-09-01

Dinoflagellates within the genus Symbiodinium are photosymbionts of many tropical reef invertebrates, including corals, making them central to the health of coral reefs. Symbiodinium have therefore gained significant research attention, though studies have been constrained by technical limitations. In particular, the generation of viable cells with their cell walls removed (termed protoplasts) has enabled a wide range of experimental techniques for bacteria, fungi, plants, and algae such as ultrastructure studies, virus infection studies, patch clamping, genetic transformation, and protoplast fusion. However, previous studies have struggled to remove the cell walls from armored dinoflagellates, potentially due to the internal placement of their cell walls. Here, we produce the first Symbiodinium protoplasts from three genetically and physiologically distinct strains via incubation with cellulase and osmotic agents. Digestion of the cell walls was verified by a lack of Calcofluor White fluorescence signal and by cell swelling in hypotonic culture medium. Fused protoplasts were also observed, motivating future investigation into intra- and inter-specific somatic hybridization of Symbiodinium. Following digestion and transfer to regeneration medium, protoplasts remained photosynthetically active, regrew cell walls, regained motility, and entered exponential growth. Generation of Symbiodinium protoplasts opens exciting, new avenues for researching these crucial symbiotic dinoflagellates, including genetic modification. © 2017 The Author(s) Journal of Eukaryotic Microbiology © 2017 International Society of Protistologists.

Cryptic effects of habitat declines: coral-associated fishes avoid coral-seaweed interactions due to visual and chemical cues

PubMed Central

Brooker, Rohan M.; Brandl, Simon J.; Dixson, Danielle L.

2016-01-01

Seaweed-dominated coral reefs are becoming increasingly common as environmental conditions shift away from those required by corals and toward those ideal for rampant seaweed growth. How coral-associated organisms respond to seaweed will not only impact their fate following environmental change but potentially also the trajectories of the coral communities on which they rely. However, behavioral responses by coral-associated organisms to seaweeds are poorly understood. This study examined interactions between a guild of obligate and opportunistic coral-feeding butterflyfishes (Chaetodontidae) and scleractinian corals to determine whether fishes continue to interact with corals in contact with seaweed or if they are avoided. Under natural conditions, all species interacted almost exclusively with seaweed-free corals. In a controlled patch reef experiment, fishes avoided corals in physical contact with seaweed, irrespective of dietary preferences. When visual seaweed cues were removed, butterflyfish continued to avoid corals that had been in contact with the allelopathic Galaxaura filamentosa, suggesting that chemical cues produced by coral-seaweed interactions are repellent. These findings suggest that, due to deleterious visual and chemical cues produced by coral-seaweed interactions, coral-associated organisms may struggle to locate resources as seaweed-free corals decline in abundance. PMID:26725835

Consistent C3 plant habitat of hominins during 400-300 ka at the Longyadong Cave site (Luonan Basin, central China) revealed by stable carbon isotope analyses of loess deposits

NASA Astrophysics Data System (ADS)

Zhang, Hongyan; Lu, Huayu; Wang, Shejiang

2017-04-01

The proportions of woody and grassland taxa in terrestrial ecosystems played an important role in the origin and evolution of early Palaeolithic hominins. However the influence of ecosystem changes on hominin behavior and adaptations in Asia has not been studied in detail. Hominins have exploited the Luonan Basin in the Eastern Qinling Mountains, central China, since the early Paleolithic. Dated sites, consisting of alternating loess and soil deposits with in situ artefacts, are common in the region, and provide a detailed record of Early to Middle Pleistocene hominin environments. Here, we present the results of measurements of the stable carbon isotopic composition of soil organic matter (δ13C) in the loess-paleosol sequences from the Longyadong Cave site. Our analyses of δ13C show that for at least 400 ka the Longyadong Cave site and its surroundings were dominated by C3 woody plants, whereas the nearby Liuwan site was dominated by C4 and C3 mixed grassland or woody grassland vegetation. These findings demonstrate that between 400 and 300 ka in the Luonan Basin, hominins occupied a habitat consisting of a mosaic of grassland and woodland/forest. Although the vegetation of the region changed in response to the glacial-interglacial climatic cycles, patches of woody vegetation in landscapes such as at Longyadong Cave site persisted continuously. Such environments seem to be have been favored by hominins living in the Luonan Basin, possibly because they provided a diverse range of food resources during both glacial and interglacial intervals of the Middle Pleistocene, when most of northern China was experiencing an increasing trend of drying and cooling and steppe environments were expanding. Thus, the Luonan Basin would have served as a refugium for hominin occupation in China during the Middle Pleistocene.

Quantification of climate and vegetation from Southern African Middle Stone Age sites - an application using Late Pleistocene plant material from Sibudu, South Africa

NASA Astrophysics Data System (ADS)

Bruch, A. A.; Sievers, C.; Wadley, L.

2012-04-01

The isolated geographical situation of South Africa makes the unraveling of various parameters that influence its regional climate in time challenging. If the South African climate does not exhibit a linear correlation with global archives as suggested by some authors then the contribution of independent local data that provides direct information on the environment at a certain place and time is crucial. Fossil plant remains provide valuable information on past environmental conditions. Although few paleobotanical data are available from Southern Africa, some sites reveal rich and diverse fossil floras, most notably, Sibudu Cave, KwaZulu-Natal, South Africa, with its numerous fruits, seeds, pollen and charcoal flora. Such plant remains not only provide information on past vegetation, but also serve as a sound base for paleoclimate quantification with the Coexistence Approach (CA). Sibudu Cave has pulses of Middle Stone Age occupation separated by hiatuses that are as long as 10 ka. Pre-Still Bay, Still Bay, Howiesons Poort, post-Howiesons Poort and late and final Middle Stone Age industries are present. Variations in vegetation and the animals preyed on through time suggest that subtle environmental changes could have occurred during MIS4 and MIS3 in the Sibudu area. Whilst always semi-forested, the region may have comprised a mosaic of uneven and changeable patches of coastal forest and savanna. These in turn might have influenced the numbers of forest versus plains animals in the area. Cultural factors could also have played a part in the faunal variability observed in Sibudu. Preliminary analyses of Sibudu Cave material confirm the potential of the CA for its application on Late Pleistocene African floras. In the future, comparison with other contemporaneous sites will help quantify spatial differences in the climate of the Late Pleistocene in South Africa, and may answer if environmental changes effected the cultural development from Still Bay to late MSA industries.

Geology of Isla de Mona, Puerto Rico

USGS Publications Warehouse

Frank, E.F.; Wicks, Carol M.; Mylroie, J.; Troester, J.; Alexander, E.C.; Carew, J.L.

1998-01-01

Isla de Mona is a carbonate island located in the Mona Passage 68 km west of Puerto Rico. The tectonically uplifted island is 12 km by 5 km, with an area of 55 km2, and forms a raised flat-topped platform or meseta. The meseta tilts gently to the south and is bounded by near vertical cliffs on all sides. These cliffs rise from 80 m above sea level on the north to 20 m above the sea on the southern coast. Along the southwestern and western side of the island a three- to six-meter-high Pleistocene fossil reef abuts the base of the cliff to form a narrow coastal plain. The meseta itself consists of two Mio-Pliocene carbonate units, the lower Isla de Mona Dolomite and the upper Lirio Limestone. Numerous karst features, including a series of flank margin caves primarily developed at the Lirio Limestone/Isla de Mona Dolomite contact, literally ring the periphery of the island.

Late quaternary deltaic and carbonate sedimentation in the Gulf of Papua foreland basin: Response to sea-level change

USGS Publications Warehouse

Harris, P.T.; Pattiaratchi, C.B.; Keene, J.B.; Dalrymple, R.W.; Gardner, J.V.; Baker, E.K.; Cole, A.R.; Mitchell, D.; Gibbs, P.; Schroeder, W.W.

1996-01-01

The rivers that drain the wet, mountainous island of New-Guinea discharge about 1.5 billion tonnes/yr of sediments into the adjacent seas, including the foreland basin between New Guinea and Australia. Despite this huge sediment input, there appears to have been only limited deposition in the Gulf of Papua during the (Holocene) postglacial rise in sea level. Seismic and core data indicate that the transgressive systems tract in the Gulf of Papua is thin and patchy. It is confined to regions within and north of an incised, east-west-trending shelf-valley system. Of the possible explanations for the absence of a significant transgressive systems tract, inland storage and along- and off-shelf transport of the sediment are of greatest significance. Reef growth up to the latitude of the east-west-trending incised-valley system in the southern Gulf of Papua is considered to have been facilitated by a northward-flowing coastal boundary current, the Coral Sea Coastal Current. This current now sweeps turbid, brackish waters and terrigenous sediments discharged by the rivers northwards away from the reefs. An observed northward offset in transgressive sediments in relation to the axis of the shelf valleys suggests that such a northward-flowing shelf current operated during the late Pleistocene and early Holocene. The northern limit of the Great Barrier Reef could thus be controlled by the balance between fluvial sediment supply and northward advection of suspended sediment by the Coral Sea Coastal Current. This current may also be important in maintaining a supply of clear water to the eastern Gulf of Papua, thus enabling photosynthesis and the flourishing of calcareous-algae (Halimeda) bioherms or biostromes at depths of up to 100 m over much of the middle and outer shelf, directly offshore of the modern Fly Delta. These carbonate sediments represent the exposed maximum flooding surface and condensed section. Modern highstand delta deposits have begun to prograde over this layer on the inner shelf. Copyright ?? 1996, SEPM (Society for Sedimentary Geology).

A Case Study in the Effectiveness of Marine Protected Areas (MPAs): the Islands of Bonaire and Curacao, Dutch Caribbean

NASA Astrophysics Data System (ADS)

Relles, Noelle J.

The islands of Bonaire and Curacao, Dutch Caribbean, were both mapped along their leeward coasts for dominant coral community and other benthic cover in the early 1980s. This mapping effort offers a unique baseline for comparing changes in the benthic community of the two islands since that time, particularly given the marked differences between the two islands. Bonaire is well-protected and completely surrounded by a marine protected area (MPA), which includes two no-diving marine reserves; additionally, Bonaire's population is only around 15,000. In contrast, the island of Curacao is home to 140,000 inhabitants and marine protection is limited, with a reef area of 600 ha established as a "paper" park (i.e., little enforcement). Video transects collected by SCUBA over the reefs were collected on Bonaire in January of 2008; when compared to data from 1985, coral cover had declined in the shallowest portion of the reef (< 5 m) and was mostly the result of declines in Acropora spp., whereas head corals increased. Transects closest to the no-diving marine reserves showed higher coral cover and diversity than transects located farther from the reserves. Satellite remote sensing techniques were used to create landscape-scale reef maps along the leeward coasts of both islands, which could differentiate areas of high hard coral cover (> 20%), predominantly sand (> 50%) and areas where hard coral and sand were mixed with soft corals, sea whips and marine plants. These modern maps (2007-09) were groundtruthed using the video data collected on Bonaire for accuracy and then compared to the early 1980s maps of the reefs on both islands. Bonaire experienced declines in coral cover overall and the remaining coral was increasingly patchy; however, changes in patch characteristics were not significant over the time period, but status as a marine reserve and the sheltering of the shoreline did appear to buffer against coral loss. Surprisingly, the island of Curacao did not experience a decline in total coral cover, but did become increasingly patchy, significantly more so than Bonaire. The Curacao Underwater Park afforded no additional protection against coral loss or fragmentation than an adjacent unprotected area of reef. The difference between the two islands in coral loss versus fragmentation has the potential for a unique natural experiment to study the effects of habitat fragmentation in the absence of overall habitat loss at the landscape scale. The Bonaire National Marine Park could benefit by restricting visitors to its most frequented dive sites by increasing the cost of entry into a tiered pay system, thus generating more income for education and management of the park, as well as deterring some divers from these overused sites. Satellite remote sensing-derived maps are useful for rapid reef mapping and can be utilized for comparison to ancillary maps created by more traditional methods. Satellite-derived maps can only distinguish benthic habitats coarsely (3-4 habitat classes) and are only as reliable as their source data, they benefit greatly from fieldwork to determine depth, geographic location, and benthic habitat cover in real time.

Holocene Demographic Changes and the Emergence of Complex Societies in Prehistoric Australia.

PubMed

Williams, Alan N; Ulm, Sean; Turney, Chris S M; Rohde, David; White, Gentry

2015-01-01

A continental-scale model of Holocene Australian hunter-gatherer demography and mobility is generated using radiocarbon data and geospatial techniques. Results show a delayed expansion and settlement of much of Australia following the termination of the late Pleistocene until after 9,000 years ago (or 9ka). The onset of the Holocene climatic optimum (9-6ka) coincides with rapid expansion, growth and establishment of regional populations across ~75% of Australia, including much of the arid zone. This diffusion from isolated Pleistocene refugia provides a mechanism for the synchronous spread of pan-continental archaeological and linguistic attributes at this time (e.g. Pama-Nyungan language, Panaramitee art style, backed artefacts). We argue longer patch residence times were possible at the end of the optimum, resulting in a shift to more sedentary lifestyles and establishment of low-level food production in some parts of the continent. The onset of El Niño - Southern Oscillation (ENSO; 4.5-2ka) restricted low-level food production, and resulted in population fragmentation, abandonment of marginal areas, and reduction in ranging territory of ~26%. Importantly, climate amelioration brought about by more pervasive La Niña conditions (post-2ka), resulted in an intensification of the mobility strategies and technological innovations that were developed in the early- to mid-Holocene. These changes resulted in population expansion and utilization of the entire continent. We propose that it was under these demographically packed conditions that the complex social and religious societies observed at colonial contact were formed.

Cyanotoxins are not implicated in the etiology of coral black band disease outbreaks on Pelorus Island, Great Barrier Reef.

PubMed

Glas, Martin S; Motti, Cherie A; Negri, Andrew P; Sato, Yui; Froscio, Suzanne; Humpage, Andrew R; Krock, Bernd; Cembella, Allan; Bourne, David G

2010-07-01

Cyanobacterial toxins (i.e. microcystins) produced within the microbial mat of coral black band disease (BBD) have been implicated in disease pathogenicity. This study investigated the presence of toxins within BBD lesions and other cyanobacterial patch (CP) lesions, which, in some instances ( approximately 19%), facilitated the onset of BBD, from an outbreak site at Pelorus Island on the inshore, central Great Barrier Reef (GBR). Cyanobacterial species that dominated the biomass of CP and BBD lesions were cultivated and identified, based on morphology and 16S rRNA gene sequences, as Blennothrix- and Oscillatoria-affiliated species, respectively, and identical to cyanobacterial sequences retrieved from previous molecular studies from this site. The presence of the cyanotoxins microcystin, cylindrospermopsin, saxitoxin, nodularin and anatoxin and their respective gene operons in field samples of CP and BBD lesions and their respective culture isolations was tested using genetic (PCR-based screenings), chemical (HPLC-UV, FTICR-MS and LC/MS(n)) and biochemical (PP2A) methods. Cyanotoxins and cyanotoxin synthetase genes were not detected in any of the samples. Cyanobacterial species dominant within CP and BBD lesions were phylogenetically distinct from species previously shown to produce cyanotoxins and isolated from BBD lesions. The results from this study demonstrate that cyanobacterial toxins appear to play no role in the pathogenicity of CP and BBD at this site on the GBR.

Altered juvenile fish communities associated with invasive Halophila stipulacea seagrass habitats in the U.S. Virgin Islands.

PubMed

Olinger, Lauren K; Heidmann, Sarah L; Durdall, Allie N; Howe, Colin; Ramseyer, Tanya; Thomas, Sara G; Lasseigne, Danielle N; Brown, Elizabeth J; Cassell, John S; Donihe, Michele M; Duffing Romero, Mareike D; Duke, Mara A; Green, Damon; Hillbrand, Paul; Wilson Grimes, Kristin R; Nemeth, Richard S; Smith, Tyler B; Brandt, Marilyn

2017-01-01

Caribbean seagrass habitats provide food and protection for reef-associated juvenile fish. The invasive seagrass Halophila stipulacea is rapidly altering these seascapes. Since its arrival in the Caribbean in 2002, H. stipulacea has colonized and displaced native seagrasses, but the function of this invasive seagrass as a juvenile fish habitat remains unknown. To compare diversity, community structure, and abundance of juvenile fish between H. stipulacea and native seagrass beds, fish traps were deployed in four nearshore bays around St. Thomas, U.S. Virgin Islands. Traps were deployed in Frenchman, Lindbergh, and Sprat Bays for 24 h intervals in patches of bare sand, patches of H. stipulacea and patches of the native Caribbean seagrasses Thalassia testudinum and Syringodium filiforme. Traps were then deployed in Brewers Bay for 12 h intervals in stands of H. stipulacea and S. filiforme. Relative and total abundances of juvenile fish, identified at least to family, were compared across treatment habitats for each trap deployment period. The catch from H. stipulacea, compared to native seagrasses, comprised a greater abundance of nocturnal carnivores Lutjanus synagris (family Lutjanidae) and Haemulon flavolineatum (family Haemulidae). Additionally, the herbivore species Sparisoma aurofrenatum (family Labridae) and Acanthurus bahianus (family Acanthuridae) and the diurnal carnivore species Pseudopeneus maculatus (family Mullidae) were relatively scarce in H. stipulacea. The catch from sand was much smaller, compared to vegetated habitats, and comprised only L. synagris, H. flavolineatum, and H. aurolineatum. These results provide evidence of reduced family diversity and altered juvenile fish assemblages in H. stipulacea, driven by an abundance of some nocturnal carnivores and scarcity of herbivores and diurnal carnivores. The findings from the present work underpin the need for further investigation and mitigation of this invasion, particularly where H. stipulacea is driving seascape-alterations of key juvenile fish habitats.

Marine benthic invertebrates from the Upper Jurassic of northern Ethiopia and their biogeographic affinities

NASA Astrophysics Data System (ADS)

Kiessling, Wolfgang; Kumar Pandey, Dhirendra; Schemm-Gregory, Mena; Mewis, Heike; Aberhan, Martin

2011-02-01

We present the first modern description of corals, brachiopods and bivalves from the Antalo Limestone in the Mekele Outlier of northern Ethiopia. This fauna is largely of Oxfordian age and lived in shallow subtidal environments and in small patch reefs. In combining our new data with fossil occurrence data from the Paleobiology Database, we conducted multidimensional scaling analyses to assess biogeographic patterns and the delineation of the Ethiopian Province for the Callovian to Kimmeridgian stages. Results suggest that an Ethiopian Province is indeed evident for our focal groups, but this is more confined than traditionally assumed. The so defined Ethiopian Province includes Tunisia, the Levant, Arabia and much of East Africa, but excludes Tanzania and India. The special status of India and Tanzania is perhaps due to latitudinal gradients in faunal composition.

Basin formation and Neogene sedimentation in a backarc setting, Halmahera, eastern Indonesia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hall, R.; Nichols, G.J.

1991-03-01

It has been proposed that basins in backarc setting form in association with subduction by thinning of continental crust, backarc spreading in oceanic crust, compression, or trapping of pieces of oceanic plate behind an arc. The Halmahera basin in eastern Indonesia developed in a backarc setting but does not fall into these categories; it formed by subsidence of thickened crust made up of imbricated Mesozoic-Paleogene arc and ophiolite rocks. Halmahera lies at the western edge of the Philippine Sea Plate in a complex zone of convergence between the Eurasian margin, the oceanic plates of the West Pacific, and the Australian/Indianmore » Plate to the south. The basement is an imbricated complex of Mesozoic to Paleogene ophiolite, arc, and arc-related rocks. During the Miocene this basement complex formed an area of thickened crust upon which carbonate reef and reef-associated sediments were deposited. The authors interpret this shallow marine region to be similar to many of the oceanic plateaus and ridges found within the Philippine Sea Plate today. In the Late Miocene, convergence between the Philippine Sea Plate and the Eurasian margin resulted in the formation of the Halmahera Trench to the west of this region of thickened crust. Subduction of the Molucca Sea Plate caused the development of a volcanic island arc. Subsidence in the backarc area produced a broad sedimentary basin filled by clastics eroded from the arc and from uplifted basement and cover rocks. The basin was asymmetric with the thickest sedimentary fill on the western side, against the volcanic arc. The Halmahera basin was modified in the Plio-Pleistocene by east-west compression as the Molucca Sea Plate was eliminated by subduction.« less

Digital shaded relief image of a carbonate platform (northern Great Bahama Bank): Scenery seen and unseen

NASA Astrophysics Data System (ADS)

Boss, Stephen K.

1996-11-01

A mosaic image of the northern Great Bahama Bank was created from separate gray-scale Landsat images using photo-editing and image analysis software that is commercially available for desktop computers. Measurements of pixel gray levels (relative scale from 0 to 255 referred to as digital number, DN) on the mosaic image were compared to bank-top bathymetry (determined from a network of single-channel, high-resolution seismic profiles), bottom type (coarse sand, sandy mud, barren rock, or reef determined from seismic profiles and diver observations), and vegetative cover (presence and/or absence and relative density of the marine angiosperm Thalassia testudinum determined from diver observations). Results of these analyses indicate that bank-top bathymetry is a primary control on observed pixel DN, bottom type is a secondary control on pixel DN, and vegetative cover is a tertiary influence on pixel DN. Consequently, processing of the gray-scale Landsat mosaic with a directional gradient edge-detection filter generated a physiographic shaded relief image resembling bank-top bathymetric patterns related to submerged physiographic features across the platform. The visibility of submerged karst landforms, Pleistocene eolianite ridges, islands, and possible paleo-drainage patterns created during sea-level lowstands is significantly enhanced on processed images relative to the original mosaic. Bank-margin ooid shoals, platform interior sand bodies, reef edifices, and bidirectional sand waves are features resulting from Holocene carbonate deposition that are also more clearly visible on the new physiographic images. Combined with observational data (single-channel, high-resolution seismic profiles, bottom observations by SCUBA divers, sediment and rock cores) across the northern Great Bahama Bank, these physiographic images facilitate comprehension of areal relations among antecedent platform topography, physical processes, and ensuing depositional patterns during sea-level rise.

The Eugen Seibold coral mounds offshore western Morocco: oceanographic and bathymetric steering of a newly discovered cold-water coral province

NASA Astrophysics Data System (ADS)

Glogowski, Silke; Dullo, Christian; Flögel, Sascha; Feldens, Peter; Hühnerbach, Veit; von Reumont, Jonas; Krastel, Sebastian; Wynn, Russ B.; Liebetrau, Volker

2015-04-01

This study presents new seafloor bathymetric and sidescan sonar data identifying a previously unknown cold-water coral (CWC) province on the Atlantic margin off western Morocco (ca. 31° N). Applying the concept of seawater density as a predictive tool for living CWC reef occurrence during research cruise 32 aboard RV Maria S. Merian in October 2013 CTD casts revealed potential sites. Direct sampling retrieved living coral patches within an extensive field of carbonate mounds, covering an area of ~410 km2 on the upper slope ~40 nautical miles north of Agadir Canyon. Individual mounds are up to 12 m high and are mainly composed of dead cold-water corals Lophelia pertusa thickets at present-day water depths of 678-863 m. Living CWCs represent only a thin veneer and were sampled by box coring in the shallower parts of the mound field between 678 and 719 m. CTD measurements in these shallower areas revealed that the occurrence of these living CWC reefs coincides with the deeper part of the North Atlantic Central Water (NACW) mass exhibiting conservative temperatures Φ of 9.78-9.94° C, absolute salinity SA of 35.632 g/kg, and a sea water density σΦ of 27.31-27.33 kg/m3). This is in good agreement with observations from the Renard Ridge (35° N, Gulf of Cadiz) to the north and sites off Mauretania (17° N-18° N) to the south, 'with the exception of sparse live corals in the latter region, the CWC reefs of both regions consist of a dead fabric in the deeper layer of the NACW slightly above the Mediterranean Outflow Water. The bathymetric and oceanographic settings of this newly discovered CWC site, with its thin veneer of living corals and much larger accumulations of coral rubble, are consistent with published evidence that, over the past three glacial-interglacial cycles, active CWC reef growth south of 50° N was more favourable during glacial times (possibly up to the very early Holocene) in this sector of the northeast Atlantic Ocean. The newly discovered province is here named the Eugen Seibold coral mounds in honour of the pioneering marine geologist Eugen Seibold (1918-2013).

Implications of sensor design for coral reef detection: Upscaling ground hyperspectral imagery in spatial and spectral scales

NASA Astrophysics Data System (ADS)

Caras, Tamir; Hedley, John; Karnieli, Arnon

2017-12-01

Remote sensing offers a potential tool for large scale environmental surveying and monitoring. However, remote observations of coral reefs are difficult especially due to the spatial and spectral complexity of the target compared to sensor specifications as well as the environmental implications of the water medium above. The development of sensors is driven by technological advances and the desired products. Currently, spaceborne systems are technologically limited to a choice between high spectral resolution and high spatial resolution, but not both. The current study explores the dilemma of whether future sensor design for marine monitoring should prioritise on improving their spatial or spectral resolution. To address this question, a spatially and spectrally resampled ground-level hyperspectral image was used to test two classification elements: (1) how the tradeoff between spatial and spectral resolutions affects classification; and (2) how a noise reduction by majority filter might improve classification accuracy. The studied reef, in the Gulf of Aqaba (Eilat), Israel, is heterogeneous and complex so the local substrate patches are generally finer than currently available imagery. Therefore, the tested spatial resolution was broadly divided into four scale categories from five millimeters to one meter. Spectral resolution resampling aimed to mimic currently available and forthcoming spaceborne sensors such as (1) Environmental Mapping and Analysis Program (EnMAP) that is characterized by 25 bands of 6.5 nm width; (2) VENμS with 12 narrow bands; and (3) the WorldView series with broadband multispectral resolution. Results suggest that spatial resolution should generally be prioritized for coral reef classification because the finer spatial scale tested (pixel size < 0.1 m) may compensate for some low spectral resolution drawbacks. In this regard, it is shown that the post-classification majority filtering substantially improves the accuracy of all pixel sizes up to the point where the kernel size reaches the average unit size (pixel < 0.25 m). However, careful investigation as to the effect of band distribution and choice could improve the sensor suitability for the marine environment task. This in mind, while the focus in this study was on the technologically limited spaceborne design, aerial sensors may presently provide an opportunity to implement the suggested setup.

Plio-Pleistocene extinctions and immigration credit reflected in the size-frequency distribution of Mediterranean marine bivalves

NASA Astrophysics Data System (ADS)

Nawrot, Rafal; Zuschin, Martin; Chattopadhyay, Devapriya

2015-04-01

Following the opening of the Suez Canal hundreds of Red Sea species have entered the Mediterranean Sea making it a global hot spot of marine bioinvasion. With the ongoing influx of the subtropical and tropical alien species and increasing sea surface temperatures, the Mediterranean biota is currently gaining a more tropical character and increasingly becoming a mixture of faunal stocks with different evolutionary histories. This susceptibility to invasion was suggested to reflect the presence of an empty ecological space left after decimation of incumbent warm-water fauna during Plio-Pleistocene climate fluctuations. As molluscs are among the most prolific immigrants, we test this hypothesis using data on taxonomic composition and body size of Pliocene Mediterranean bivalves derived from the literature sources and museum collections. The Pliocene inter-specific size-frequency distribution (SFD) is strikingly similar to the SFDs of the Recent Red Sea bivalve fauna, in spite of different biogeographic provenance and the absence of true reef ecosystems in the Pliocene of the Mediterranean region. In contrast, body-size patterns in both assemblages are significantly different from the present-day Mediterranean fauna characterized by smaller median and modal size. Our preliminary results suggest that the distinct shape of the modern Mediterranean SFD may reflect the selective nature of the late Piacenzian - Galesian (Late Pliocene - Early Pleistocene) extinctions pulses related to the onset of the Northern Hemisphere glaciations. These extinctions affected almost 40% of Pliocene species and were biased towards large-bodied taxa. They were not followed by re-immigration of warm-water species owing to the isolation from the tropical Atlantic biota by the cold upwelling along the NW coasts of Africa. The resulting invasion credit (sensu Jackson & Sax, 2010) is currently being paid by the Red Sea bivalves colonizing the Mediterranean Sea through the Suez Canal. Successful immigrants are significantly larger than native species reflecting the gross differences in the body-size distributions of the source and recipient species pools. These size differences are further amplified by environmental and biotic filters acting along the invasion pathway. Therefore, the continuing inflow of tropical invaders will restore the Pliocene body-size patterns in the Mediterranean bivalve fauna. References Jackson, S.T. & Sax, D.F., 2010. Trends in Ecology and Evolution, 25: 153-160

Pleistocene changes in the fauna and flora of South america.

PubMed

Vuilleumier, B S

1971-08-27

In recent years, the view that Pleistocene climatic events played a major role in the evolution of the biotas of southern, primarily tropical continents has begun to displace the previously held conviction that these areas remained relatively stable during the Quaternary. Studies of speciation patterns of high Andean plant and avian taxa (7-14) have led to the conclusion that Pleistocene climatic events were the factors that ultimately shaped the patterns now observed in the paramo-puna and the related Patagonian flora and fauna. The final uplift of the Andes at the end of the Tertiary automatically limits the age of the high Andean habitats and their biotas to the Quaternary. Within this period, the number of ecological fluctuations caused by the glaciations could easily have provided the mechanism behind the patterns now present in these habitats (Appendix, 1; Figs. 1 and 2; Table 1). In glacial periods, when vegetation belts, were lowered, organisms in the paramo-puna habitat were allowed to expand their ranges. In interglacial periods, these taxa were isolated on disjunct peaks, where differentiation could occur. At times of ice expansion, glacial tongues and lakes provided local barriers to gene exchange, whereas in warm, interglacial times, dry river valleys were a major deterrent to the interbreeding of populations on different mountains (Fig. 2; Table 2). A preliminary analysis of about 10 to 12 percent of the total South American avifauna (14), subsequent to the study of the high Andean biota, suggested that the birds of all the major habitats of the continent possess, with about equal frequency, similar stages of speciation. This correspondence in levels of evolution indicated that the avifauna of vegetation zones which were thought to have been more stable (for example, tropical rainforests) are as actively speciating as are those of the more recent paramo-puna habitats. More intensive work on lowland tropical taxa (16, 19-21) and recent work on montane forest elements (40) now justify the conclusion that the floras and faunas of these areas were also greatly affected by Pleistocene climatic shifts. In the broad region of South America that lies within the tropics, a series of humid-arid cycles (Appendix, 6, 8-10) drastically and repeatedly altered vegetation patterns during the Quaternary. Both montane and lowland rainforests were fragmented during dry periods and were able to reexpand during humid phases. Speciation of forest elements was initiated-and sometimes completed-in isolated patches of the fragmented forest. Secondary contact, with hybridization or reunition of populations that did not become reproductively isolated, occurred in periods of reexpansion. These biological data, combined with supportive geological evidence (Appendix, 1-11), show that climatic events during the last million or so years have affected the biota of South America as much as the Pleistocene glacial changes affected the biotas of Eurasia and North America. Since most of South America lies within tropical latitudes, it is suggested here that part of the diversity of species in the tropical areas of this continent is due to two historical factors: the lack of wholesale elimination of species (compared with northern and high latitudes), and ample opportunity for speciation in successive periods of ecological isolation. The apparent paradox of the wealth of species in the "stable tropics" is partially explained by the fact that the tropics have probably been quite unstable, from the point of view of their biotas, during the Pleistocene and perhaps part of the Tertiary.

Late Pleistocene and Holocene sedimentary facies on the Ebro continental shelf

USGS Publications Warehouse

Diaz, J.; Nelson, C.H.; Barber, J.H.; Giro, S.

1990-01-01

Late Pleistocene-Holocene history of the Ebro continental shelf of northeastern Spain is recorded in two main sedimentary units: (1) a lower, transgressive unit that covers the shelf and is exposed on the outer shelf south of 40??40???N, and (2) an upper, progradational, prodeltaic unit that borders the Ebro Delta and extends southward along the inner shelf. The lower transgressive unit includes a large linear shoal found at a water depth of 90 m and hardground mounds at water depths of 70-80 m. Some patches of earlier Pleistocene prodelta mud remain also, exposed or covered by a thin veneer of transgressive sand on the northern outer shelf. This relict sand sheet is 2-3 m thick and contains 9000-12,500 yr old oyster and other shells at water depths of 78-88 m. The upper prodelta unit covers most of the inner shelf from water depths of 20-80 m and extends from the present Ebro River Delta to an area to the southwest where the unit progressively thins and narrows. Interpretation of high-resolution seismic reflection data shows the following facies occurring progressively offshore: (1) a thick stratified facies with thin progradational "foresets beds", (2) a faintly laminated facies with sparse reflectors of low continuity, and (3) a thin transparent bottomset facies underlain by a prominent flat-lying reflector. Deposition in the northern half of the prodelta began as soon as the shoreline transgressed over the mid-shelf, but progradation of the southern half did not begin until about 1000-3000 yrs after the transgression. A classic deltaic progradational sequence is shown in the Ebro prodelta mud by (1) gradation of seismic facies away from the delta, (2) coarsening-upward sequences near the delta and fining-upward sequences in the distal mud belt deposits, and (3) thin storm-sand layers and shell lags in the nearshore stratified facies. The boundaries of the prodeltaic unit are controlled by increased current speeds on the outer shelf (where the shelf narrows) and by development of the shoreface sand body resulting from shoaling waves on the inner shelf. ?? 1990.

Five-year evaluation of habitat remediation in Thunder Bay, Lake Huron: Comparison of constructed reef characteristics that attract spawning lake trout

USGS Publications Warehouse

Marsden, J. Ellen; Binder, Thomas R.; Johnson, James; He, Ji; Dingledine, Natalie; Adams, Janice; Johnson, Nicholas S.; Buchinger, Tyler J.; Krueger, Charles C.

2016-01-01

Degradation of aquatic habitats has motivated construction and research on the use of artificial reefs to enhance production of fish populations. However, reefs are often poorly planned, reef design characteristics are not evaluated, and reef assessments are short-term. We constructed 29 reefs in Thunder Bay, Lake Huron, in 2010 and 2011 to mitigate for degradation of a putative lake trout spawning reef. Reefs were designed to evaluate lake trout preferences for height, orientation, and size, and were compared with two degraded natural reefs and a high-quality natural reef (East Reef). Eggs and fry were sampled on each reef for five years post-construction, and movements of 40 tagged lake trout were tracked during three spawning seasons using acoustic telemetry. Numbers of adults and spawning on the constructed reefs were initially low, but increased significantly over the five years, while remaining consistent on East Reef. Adult density, egg deposition, and fry catch were not related to reef height or orientation of the constructed reefs, but were related to reef size and adjacency to East Reef. Adult lake trout visited and spawned on all except the smallest constructed reefs. Of the metrics used to evaluate the reefs, acoustic telemetry produced the most valuable and consistent data, including fine-scale examination of lake trout movements relative to individual reefs. Telemetry data, supplemented with diver observations, identified several previously unknown natural spawning sites, including the high-use portions of East Reef. Reef construction has increased the capacity for fry production in Thunder Bay without apparently decreasing the use of the natural reef. Results of this project emphasize the importance of multi-year reef assessment, use of multiple assessment methods, and comparison of reef characteristics when developing artificial reef projects. Specific guidelines for construction of reefs focused on enhancing lake trout spawning are suggested.

Holocene Demographic Changes and the Emergence of Complex Societies in Prehistoric Australia

PubMed Central

Williams, Alan N.; Ulm, Sean; Turney, Chris S. M.; Rohde, David; White, Gentry

2015-01-01

A continental-scale model of Holocene Australian hunter-gatherer demography and mobility is generated using radiocarbon data and geospatial techniques. Results show a delayed expansion and settlement of much of Australia following the termination of the late Pleistocene until after 9,000 years ago (or 9ka). The onset of the Holocene climatic optimum (9-6ka) coincides with rapid expansion, growth and establishment of regional populations across ~75% of Australia, including much of the arid zone. This diffusion from isolated Pleistocene refugia provides a mechanism for the synchronous spread of pan-continental archaeological and linguistic attributes at this time (e.g. Pama-Nyungan language, Panaramitee art style, backed artefacts). We argue longer patch residence times were possible at the end of the optimum, resulting in a shift to more sedentary lifestyles and establishment of low-level food production in some parts of the continent. The onset of El Niño - Southern Oscillation (ENSO; 4.5-2ka) restricted low-level food production, and resulted in population fragmentation, abandonment of marginal areas, and reduction in ranging territory of ~26%. Importantly, climate amelioration brought about by more pervasive La Niña conditions (post-2ka), resulted in an intensification of the mobility strategies and technological innovations that were developed in the early- to mid-Holocene. These changes resulted in population expansion and utilization of the entire continent. We propose that it was under these demographically packed conditions that the complex social and religious societies observed at colonial contact were formed. PMID:26083101

SPATIAL HETEROGENEITY OF PHOTOSYNTHETIC ACTIVITY WITHIN DISEASED CORALS FROM THE GREAT BARRIER REEF(1).

PubMed

Roff, George; Ulstrup, Karin E; Fine, Maoz; Ralph, Peter J; Hoegh-Guldberg, Ove

2008-04-01

Morphological diagnosis and descriptions of seven disease-like syndromes affecting scleractinian corals were characterized from the southern Great Barrier Reef (GBR). Chl a fluorescence of PSII was measured using an Imaging-PAM (pulse amplitude modulated) fluorometer, enabling visualization of the two-dimensional variability in the photophysiology of endosymbiotic dinoflagellates (zooxanthellae) by measuring rapid light curves. Three of four syndromes associated with active tissue loss (type a) were spatially homogenous (white syndrome, brown band, and skeletal eroding band), with no impact on the photochemical function of zooxanthellae populations at or behind the lesion borders. However, a decline in maximum quantum yield (Fv /Fm ) and elevated levels of maximum nonphotochemical quenching (NPQmax ) occurred in visually healthy tissue of black band disease adjacent to the lesion borders, possibly due to hypoxic conditions caused by the black band cyanobacterial mat. Two out of three syndromes associated with pathological change of intact tissue with no active tissue loss (type b) showed variable photophysiological responses (neoplasia and pigmentation response). Only the bleached foci associated with white patch syndrome appeared to impact primarily on the symbiotic dinoflagellates, as evidenced by declines in minimum fluorescence (F0 ) and maximum quantum yield (Fv /Fm ), with no indication of degeneration in the host tissues. Our results suggest that for the majority of coral syndromes from the GBR, pathogenesis occurs in the host tissue, while the impact on the zooxanthellae populations residing in affected corals is minimal. © 2008 Phycological Society of America.

Geologic assessment of undiscovered oil and gas resources in Aptian carbonates, onshore northern Gulf of Mexico Basin, United States

USGS Publications Warehouse

Hackley, Paul C.; Karlsen, Alexander W.

2014-01-01

Carbonate lithofacies of the Lower Cretaceous Sligo Formation and James Limestone were regionally evaluated using established U.S. Geological Survey (USGS) assessment methodology for undiscovered conventional hydrocarbon resources. The assessed area is within the Upper Jurassic–Cretaceous–Tertiary Composite total petroleum system, which was defined for the assessment. Hydrocarbons reservoired in carbonate platform Sligo-James oil and gas accumulations are interpreted to originate primarily from the Jurassic Smackover Formation. Emplacement of hydrocarbons occurred via vertical migration along fault systems; long-range lateral migration also may have occurred in some locations. Primary reservoir facies include porous patch reefs developed over paleostructural salt highs, carbonate shoals, and stacked linear reefs at the carbonate shelf margin. Hydrocarbon traps dominantly are combination structural-stratigraphic. Sealing lithologies include micrite, calcareous shale, and argillaceous lime mudstone. A geologic model, supported by discovery history analysis of petroleum geology data, was used to define a single regional assessment unit (AU) for conventional reservoirs in carbonate facies of the Sligo Formation and James Limestone. The AU is formally entitled Sligo-James Carbonate Platform Oil and Gas (50490121). A fully risked mean undiscovered technically recoverable resource in the AU of 50 million barrels of oil (MMBO), 791 billion cubic feet of natural gas (BCFG), and 26 million barrels of natural gas liquids was estimated. Substantial new development through horizontal drilling has occurred since the time of this assessment (2010), resulting in cumulative production of >200 BCFG and >1 MMBO.

Bathymetric distribution of foraminifera in Jamaican reef environments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martin, R.E.; Liddell, W.D.

1985-02-01

Recent foraminifera inhabiting Jamaican north-coast fringing reefs display variations in distributional patterns that are related to bathymetry and reef morphology. Sediment samples containing foraminifera were collected along a profile that traversed the back reef (depth 1-2 m), fore-reef terrace (3-15 m), fore-reef escarpment (15-27 m), fore-reef slope (30-55 m), and upper deep fore reef (70 m). Approximately 150 species distributed among 80 genera were identified from the samples. Preliminary analyses indicate that diversity values (S, H') are lowest on the fore-reef terrace (79, 3.0, respectively), increase similarly in back-reef and fore-reef escarpment and slope settings (93, 3.4), and are highestmore » on the deep fore reef (109, 3.7). Larger groupings (suborders) exhibit distinct bathymetric trends with miliolids occurring more commonly in back-reef (comprising 51% of the fauna) than in fore-reef (28%) zones, whereas agglutinated and planktonic species occur more commonly in deeper reef (> 15 m, 9% and 4%, respectively) than in shallower reef zones (< 15 m, 3%, and 0.5%, respectively). Among the more common species Amphistegina gibbosa (Rotolina) is much more abundant in fore-reef (3%) environments, and Sorites marginalis (Miliolina) occurs almost exclusively in the back reef, where it comprises 5.5% of the fauna. Q-mode cluster analysis, involving all species collected, enabled the delineation of back-reef, shallow fore-reef, and deeper fore-reef biofacies, also indicating the potential utility of foraminiferal distributions in detailed paleoenvironment interpretations of ancient reef settings.« less

Agglutinated Foraminifera indicate a deep bottom current over the Hovgaard Ridge, West of Spitsbergen

NASA Astrophysics Data System (ADS)

Kaminski, Michael; Frank, Niessen

2015-04-01

The Hovgård Ridge is situated in Fram Strait, west of Spitsbergen. The ridge either represents a submerged fragment of continental crust or an upwarped fragmant of ocean crust within the Fram Strait. Its crest rises to a water depth of approx. 1170 m. During Expedition 87 of the Icebreaker POLARSTERN in August 2014, a sediment-echosounding profile was recorded and a boxcore station was collected from the crest of Hovgård Ridge at 1169 m water depth. The surficial sediment at this station consists of dark yellowish brown pebbly-sandy mud with a minor admixture of biogenic components in the coarse fraction. Patches of large tubular foraminifera and isolated pebbles were clearly visible on the sediment surface. The sediment surface of the boxcore was covered with patches of large (>1 mm diameter) large tubular astrorhizids belonging mostly to the species Astrorhiza crassatina Brady, with smaller numbers of Saccorhiza, Hyperammina, and Psammosiphonella. Non-tubular species consist mainly of opportunistic forms such as Psammosphaera and Reophax. The presence of large suspension-feeding tubular genera as well as opportunistic forms, as well as sediment winnowing, point to the presence of a deep current at this locality that is strong enough to disturb the benthic fauna. This is confirmed by data obtained from sediment echosounding, which exhibit lateral variation of relative sedimentation rates within the Pleistocene sedimentary drape covering the ridge indicative of winnowing in a south-easterly direction.

A multidisciplinary environmental integrated approach to better understand the Tegnue Reefs formation, offshore Chioggia, Northern Adriatic Sea.

NASA Astrophysics Data System (ADS)

Bergamasco, Andrea; Donnici, Sandra; Tosi, Luigi; Tagliapietra, Davide; Zaggia, Luca; Bonaldo, Davide; Braga, Federica; Da Lio, Cristina; Keppel, Erica; Lorenzetti, Giuliano; Manfè, Giorgia; Franceschini, Gianluca; Giovanardi, Otello; Carol, Eleonora; Fornaro, Elena; Grant, Carley

2014-05-01

Several hard substrata cover the northwestern Adriatic shelf around 20 m depth as patchy reefs called 'Tegnue'. These submerged reefs form many discrete sets from offshore Grado south to the Po river delta with a large field located off Chioggia. Even if the outer part of the reef is constituted by a thick biogenic formation the underlying structure, mainly buried, is made by cemented sand and this seems to be correlated with its origin not yet fully understood. Different genetic interpretations have been proposed thus far, contemplating among other cementation due to beach-rock like processes (e.g., Stefanon, 1969, Bonardi and Tosi, 2002, Bonardi et al., 2006) or the action of ascending fluids enriched in hydrocarbons (e.g., Gabbianelli et al., 1997, Casellato and Stefanon, 2008). An on-going project, mainly a multidisciplinary integrated approach, combining physical, biological, geological, geomorphological, hydrogeological and geochemical data, supported by a detailed bathymetric mapping, an overall general circulation modeling at high resolution, a robust geophysical evidence, and detailed underwater surveys performed by a team of scuba-diver scientists, aims to better understand the genetic processes backing the distribution, early genesis and evolution of such relevant habitats. Actually, using all the new available data, our plan is to verify which previous interpretations on the origin of the Tegnue core better match with the diagenetic processes that led to the cementation of the sand layers lying at the base of the organic reefs. Preliminary results suggest that the Tegnue reefs formed along paleochannels features related to the former alluvial plain and submerged by the Holocene transgression. Whatever their genesis, once exposed such rocky substrata are then quickly colonized by living organisms, which contribute to the growth and expansion of the reef. Calcareous algae and in general the organic concretion could have a role during the reef accretion, and benthic invertebrates like bryozoans, mollusks, serpulids and corals also contribute to the final building of the status of Tegnue's environment, but we want to demonstrate that the in first stage of consolidation abiotic phenomena could have played a major role. In order to prove our thesis a series of ground water sampling as well as rock sampling and sediment cores were carried out. The poster illustrates the overall ongoing program as well as some work in progress and first results from field cruise. Acknowledgments This work was supported by the Municipality of Chioggia through the Tegnue Project and partially by the Flagship Project RITMARE - The Italian Research for the Sea - coordinated by the Italian National Research Council and funded by the Italian Ministry of Education, University and Research within the National Research Program 2011-2013, and by the Scientific Cooperation Agreement between the CONICET (Argentina) - CNR (Italy), Program 2013-2014, Project 'Fresh-saltwaters in high-value coastlands: from the hydrogeophysical/geochemical characterization of the present interactions to the modeling quantification of the expected effects of climate changes'. References - Bonardi, M., Tosi, L. 2000. Indagini preliminari su alcune formazioni di sabbie cementate nella laguna di Venezia. In: La Ricerca Scientifica Per Venezia. Il Progetto Sistema Lagunare Veneziano, Modellistica del Sistema Lagunare Studio di Impatto Ambientale. Istituto Veneto di Scienze, Lettere ed Arti, Vol. II, Tomo II, p. 967-974, Venezia, ISBN: 88-86166-82-6. - Bonardi, M., Tosi, L., Rizzetto, F., Brancolini, G., Baradello, L. 2006. Effects of climate changes on the late Pleistocene and Holocene sediments of the Venice Lagoon, Italy. Journal of Coastal Research, SI 39, 279-284. - Casellato S., Stefanon A. 2008. Coralligenous habitat in the northern Adriatic Sea: an overview. Marine Ecology, 29: 321-341. - Gabbianelli, G., Colantoni, P., Degetto, S., Dinelli, E., Lucchini, F. 1997. Contributi sedimentologici, geochimici ed isotopici per una caratterizzazione ambientale dell'Adriatico settentrionale. Atti 1° Forum Italiano delle Scienze della Terra. Bellaria: 242-243. - Stefanon A. 1969. The role of beachrock in the study of evolution of the Adriatic Sea. Memorie di Biogeografia Adriatica, 8: 79-87.

Self-generated morphology in lagoon reefs

PubMed Central

Hamblin, Michael G.

2015-01-01

The three-dimensional form of a coral reef develops through interactions and feedbacks between its constituent organisms and their environment. Reef morphology therefore contains a potential wealth of ecological information, accessible if the relationships between morphology and ecology can be decoded. Traditionally, reef morphology has been attributed to external controls such as substrate topography or hydrodynamic influences. Little is known about inherent reef morphology in the absence of external control. Here we use reef growth simulations, based on observations in the cellular reefs of Western Australia’s Houtman Abrolhos Islands, to show that reef morphology is fundamentally determined by the mechanical behaviour of the reef-building organisms themselves—specifically their tendency to either remain in place or to collapse. Reef-building organisms that tend to remain in place, such as massive and encrusting corals or coralline algae, produce nodular reefs, whereas those that tend to collapse, such as branching Acropora, produce cellular reefs. The purest reef growth forms arise in sheltered lagoons dominated by a single type of reef builder, as in the branching Acropora-dominated lagoons of the Abrolhos. In these situations reef morphology can be considered a phenotype of the predominant reef building organism. The capacity to infer coral type from reef morphology can potentially be used to identify and map specific coral habitat in remotely sensed images. More generally, identifying ecological mechanisms underlying other examples of self-generated reef morphology can potentially improve our understanding of present-day reef ecology, because any ecological process capable of shaping a reef will almost invariably be an important process in real time on the living reef. PMID:26175962

Community structure and coral status across reef fishing intensity gradients in Palk Bay reef, southeast coast of India.

PubMed

Manikandan, B; Ravindran, J; Shrinivaasu, S; Marimuthu, N; Paramasivam, K

2014-10-01

Coral reef fishes are exploited without the knowledge of their sustainability and their possible effect in altering the community structure of a coral reef ecosystem. Alteration of the community structure could cause a decline in the health of coral reefs and its services. We documented the coral community structure, status of live corals and reef fish assemblages in Palk Bay at the reef fishing hotspots and its nearby reef area with minimum fishing pressure and compared it with a control reef area where reef fishing was banned for more than two decades. The comparison was based on the percent cover of different forms of live corals, their diversity and the density and diversity of reef fishes. The reef fish stock in the reef fishing hotspots and its neighbouring reef was lower by 61 and 38%, respectively compared to the control reef. The herbivore fish Scarus ghobban and Siganus javus were exploited at a rate of 250 and 105 kg month(-1) fishermen(-1), respectively, relatively high comparing the small reef area. Live and dead corals colonized by turf algae were predominant in both the reef fishing hotspots and its nearby coral ecosystems. The percent cover of healthy live corals and live corals colonized by turf algae was <10 and >80%, respectively, in the intensively fished coral ecosystems. The corals were less diverse and the massive Porites and Favia colonies were abundant in the intensive reef fishing sites. Results of this study suggest that the impact of reef fish exploitation was not solely restricted to the intensively fished reefs, but also to the nearby reefs which play a critical role in the resilience of degraded reef ecosystems.

The influence of sea level and cyclones on Holocene reef flat development: Middle Island, central Great Barrier Reef

NASA Astrophysics Data System (ADS)

Ryan, E. J.; Smithers, S. G.; Lewis, S. E.; Clark, T. R.; Zhao, J. X.

2016-09-01

The geomorphology and chronostratigraphy of the reef flat (including microatoll ages and elevations) were investigated to better understand the long-term development of the reef at Middle Island, inshore central Great Barrier Reef. Eleven cores across the fringing reef captured reef initiation, framework accretion and matrix sediments, allowing a comprehensive appreciation of reef development. Precise uranium-thorium ages obtained from coral skeletons revealed that the reef initiated ~7873 ± 17 years before present (yBP), and most of the reef was emplaced in the following 1000 yr. Average rates of vertical reef accretion ranged between 3.5 and 7.6 mm yr-1. Reef framework was dominated by branching corals ( Acropora and Montipora). An age hiatus of ~5000 yr between 6439 ± 19 and 1617 ± 10 yBP was observed in the core data and attributed to stripping of the reef structure by intense cyclones during the mid- to late-Holocene. Large shingle ridges deposited onshore and basset edges preserved on the reef flat document the influence of cyclones at Middle Island and represent potential sinks for much of the stripped material. Stripping of the upper reef structure around the outer margin of the reef flat by cyclones created accommodation space for a thin (<1.2 m) veneer of reef growth after 1617 ± 10 yBP that grew over the eroded mid-Holocene reef structure. Although limited fetch and open-water exposure might suggest the reef flat at Middle Island is quite protected, our results show that high-energy waves presumably generated by cyclones have significantly influenced both Holocene reef growth and contemporary reef flat geomorphology.

A Global Estimate of the Number of Coral Reef Fishers.

PubMed

Teh, Louise S L; Teh, Lydia C L; Sumaila, U Rashid

2013-01-01

Overfishing threatens coral reefs worldwide, yet there is no reliable estimate on the number of reef fishers globally. We address this data gap by quantifying the number of reef fishers on a global scale, using two approaches - the first estimates reef fishers as a proportion of the total number of marine fishers in a country, based on the ratio of reef-related to total marine fish landed values. The second estimates reef fishers as a function of coral reef area, rural coastal population, and fishing pressure. In total, we find that there are 6 million reef fishers in 99 reef countries and territories worldwide, of which at least 25% are reef gleaners. Our estimates are an improvement over most existing fisher population statistics, which tend to omit accounting for gleaners and reef fishers. Our results suggest that slightly over a quarter of the world's small-scale fishers fish on coral reefs, and half of all coral reef fishers are in Southeast Asia. Coral reefs evidently support the socio-economic well-being of numerous coastal communities. By quantifying the number of people who are employed as reef fishers, we provide decision-makers with an important input into planning for sustainable coral reef fisheries at the appropriate scale.

A Global Estimate of the Number of Coral Reef Fishers

PubMed Central

Teh, Louise S. L.; Teh, Lydia C. L.; Sumaila, U. Rashid

2013-01-01

Overfishing threatens coral reefs worldwide, yet there is no reliable estimate on the number of reef fishers globally. We address this data gap by quantifying the number of reef fishers on a global scale, using two approaches - the first estimates reef fishers as a proportion of the total number of marine fishers in a country, based on the ratio of reef-related to total marine fish landed values. The second estimates reef fishers as a function of coral reef area, rural coastal population, and fishing pressure. In total, we find that there are 6 million reef fishers in 99 reef countries and territories worldwide, of which at least 25% are reef gleaners. Our estimates are an improvement over most existing fisher population statistics, which tend to omit accounting for gleaners and reef fishers. Our results suggest that slightly over a quarter of the world’s small-scale fishers fish on coral reefs, and half of all coral reef fishers are in Southeast Asia. Coral reefs evidently support the socio-economic well-being of numerous coastal communities. By quantifying the number of people who are employed as reef fishers, we provide decision-makers with an important input into planning for sustainable coral reef fisheries at the appropriate scale. PMID:23840327

Crustose coralline algae increased framework and diversity on ancient coral reefs.

PubMed

Weiss, Anna; Martindale, Rowan C

2017-01-01

Crustose coralline algae (CCA) are key producers of carbonate sediment on reefs today. Despite their importance in modern reef ecosystems, the long-term relationship of CCA with reef development has not been quantitatively assessed in the fossil record. This study includes data from 128 Cenozoic coral reefs collected from the Paleobiology Database, the Paleoreefs Database, as well as the original literature and assesses the correlation of CCA abundance with taxonomic diversity (both corals and reef dwellers) and framework of fossil coral reefs. Chi-squared tests show reef type is significantly correlated with CCA abundance and post-hoc tests indicate higher involvement of CCA is associated with stronger reef structure. Additionally, general linear models show coral reefs with higher amounts of CCA had a higher diversity of reef-dwelling organisms. These data have important implications for paleoecology as they demonstrate that CCA increased building capacity, structural integrity, and diversity of ancient coral reefs. The analyses presented here demonstrate that the function of CCA on modern coral reefs is similar to their function on Cenozoic reefs; thus, studies of ancient coral reef collapse are even more meaningful as modern analogues.

Late Pleistocene dune activity in the central Great Plains, USA

USGS Publications Warehouse

Mason, J.A.; Swinehart, J.B.; Hanson, P.R.; Loope, D.B.; Goble, R.J.; Miao, X.; Schmeisser, R.L.

2011-01-01

Stabilized dunes of the central Great Plains, especially the megabarchans and large barchanoid ridges of the Nebraska Sand Hills, provide dramatic evidence of late Quaternary environmental change. Episodic Holocene dune activity in this region is now well-documented, but Late Pleistocene dune mobility has remained poorly documented, despite early interpretations of the Sand Hills dunes as Pleistocene relicts. New optically stimulated luminescence (OSL) ages from drill cores and outcrops provide evidence of Late Pleistocene dune activity at sites distributed across the central Great Plains. In addition, Late Pleistocene eolian sands deposited at 20-25 ka are interbedded with loess south of the Sand Hills. Several of the large dunes sampled in the Sand Hills clearly contain a substantial core of Late Pleistocene sand; thus, they had developed by the Late Pleistocene and were fully mobile at that time, although substantial sand deposition and extensive longitudinal dune construction occurred during the Holocene. Many of the Late Pleistocene OSL ages fall between 17 and 14 ka, but it is likely that these ages represent only the later part of a longer period of dune construction and migration. At several sites, significant Late Pleistocene or Holocene large-dune migration also probably occurred after the time represented by the Pleistocene OSL ages. Sedimentary structures in Late Pleistocene eolian sand and the forms of large dunes potentially constructed in the Late Pleistocene both indicate sand transport dominated by northerly to westerly winds, consistent with Late Pleistocene loess transport directions. Numerical modeling of the climate of the Last Glacial Maximum has often yielded mean monthly surface winds southwest of the Laurentide Ice Sheet that are consistent with this geologic evidence, despite strengthened anticyclonic circulation over the ice sheet. Mobility of large dunes during the Late Pleistocene on the central Great Plains may have been the result of cold, short growing seasons with relatively low precipitation and low atmospheric CO2 that increased plant moisture stress, limiting the ability of vegetation to stabilize active dune sand. The apparent coexistence of large mobile dunes with boreal forest taxa suggests a Late Pleistocene environment with few modern analogs. ?? 2011 Elsevier Ltd.

Altered juvenile fish communities associated with invasive Halophila stipulacea seagrass habitats in the U.S. Virgin Islands

PubMed Central

Brown, Elizabeth J.; Cassell, John S.; Donihe, Michele M.; Duffing Romero, Mareike D.; Duke, Mara A.; Green, Damon; Hillbrand, Paul; Wilson Grimes, Kristin R.; Nemeth, Richard S.; Smith, Tyler B.; Brandt, Marilyn

2017-01-01

Caribbean seagrass habitats provide food and protection for reef-associated juvenile fish. The invasive seagrass Halophila stipulacea is rapidly altering these seascapes. Since its arrival in the Caribbean in 2002, H. stipulacea has colonized and displaced native seagrasses, but the function of this invasive seagrass as a juvenile fish habitat remains unknown. To compare diversity, community structure, and abundance of juvenile fish between H. stipulacea and native seagrass beds, fish traps were deployed in four nearshore bays around St. Thomas, U.S. Virgin Islands. Traps were deployed in Frenchman, Lindbergh, and Sprat Bays for 24 h intervals in patches of bare sand, patches of H. stipulacea and patches of the native Caribbean seagrasses Thalassia testudinum and Syringodium filiforme. Traps were then deployed in Brewers Bay for 12 h intervals in stands of H. stipulacea and S. filiforme. Relative and total abundances of juvenile fish, identified at least to family, were compared across treatment habitats for each trap deployment period. The catch from H. stipulacea, compared to native seagrasses, comprised a greater abundance of nocturnal carnivores Lutjanus synagris (family Lutjanidae) and Haemulon flavolineatum (family Haemulidae). Additionally, the herbivore species Sparisoma aurofrenatum (family Labridae) and Acanthurus bahianus (family Acanthuridae) and the diurnal carnivore species Pseudopeneus maculatus (family Mullidae) were relatively scarce in H. stipulacea. The catch from sand was much smaller, compared to vegetated habitats, and comprised only L. synagris, H. flavolineatum, and H. aurolineatum. These results provide evidence of reduced family diversity and altered juvenile fish assemblages in H. stipulacea, driven by an abundance of some nocturnal carnivores and scarcity of herbivores and diurnal carnivores. The findings from the present work underpin the need for further investigation and mitigation of this invasion, particularly where H. stipulacea is driving seascape-alterations of key juvenile fish habitats. PMID:29161322

Conservation status and spatial patterns of AGRRA vitality indices in Southwestern Atlantic reefs.

PubMed

Kikuchi, Ruy K P; Leão, Zelinda M A N; Oliveira, Marília D M

2010-05-01

Coral reefs along the Eastern Brazilian coast extend for a distance of 800 km from 12 degrees to 18 degrees S. They are the largest and the richest reefs of Brazil coasts, and represent the Southernmost coral reefs of the Southwestern Atlantic Ocean. Few reef surveys were performed in the 90's in reef areas of Bahia State, particularly in the Abrolhos reef complex, in the Southernmost side of the state. A monitoring program applying the Atlantic and Gulf Rapid Reef Assessment (AGRRA) protocol was initiated in 2000, in the Abrolhos National Marine Park, after the creation of the South Tropical America (STA) Regional Node of the Global Coral Reef Monitoring Network (GCRMN) by the end of 1999. From that time up to 2005, nine reef surveys were conducted along the coast of the State of Bahia, including 26 reefs, with 95 benthic sites, 280 benthic transects, 2025 quadrats and 3537 stony corals. Eighteen of the 26 investigated reefs were assessed once and eight reefs of Abrolhos were surveyed twice to four times. The MDS ordination, analysis of similarity (ANOSIM, one way and two-way nested layouts) and similarity percentages (SIMPER) tests were applied to investigate the spatial and temporal patterns of reef vitality. Four indicators of the coral vitality: live coral cover, the density of the larger corals (colonics > 20cm per reef site) and of the coral recruits (colonies < 2cm per square meter), and the percentage of macroalgae indicate that the nearshore reefs, which are located less than 5 km from the coast, are in poorer condition than the reefs located more than 5 km off the coast. A higher density of coral colonies, lower macroalgal index, higher relative percent of turf algae and higher density of coral recruits in offshore reefs compared to the nearshore reefs are the conditions that contribute more than 80% to the dissimilarity between them. The offshore reefs are in better vital condition than the nearshore reefs and have a set of vitality indices more closely related to the Northwestern Atlantic reefs than the nearshore reef. These have been most severely impacted by the effects of direct human activities such as cuthrophic waters associated with sewage pollution, higher sedimentation rates and water turbidity, inadequate use of the reefs and over exploitation of their resources. The implementation of a more effective coral reef monitoring program in Bahia is mandatory, in order to improve the strategies for protection and management efforts of the reefs.

Artificial reefs and reef restoration in the Laurentian Great Lakes

USGS Publications Warehouse

McLean, Matthew W.; Roseman, Edward; Pritt, Jeremy J.; Kennedy, Gregory W.; Manny, Bruce A.

2015-01-01

We reviewed the published literature to provide an inventory of Laurentian Great Lakes artificial reef projects and their purposes. We also sought to characterize physical and biological monitoring for artificial reef projects in the Great Lakes and determine the success of artificial reefs in meeting project objectives. We found records of 6 artificial reefs in Lake Erie, 8 in Lake Michigan, 3 in Lakes Huron and Ontario, and 2 in Lake Superior. We found 9 reefs in Great Lakes connecting channels and 6 reefs in Great Lakes tributaries. Objectives of artificial reef creation have included reducing impacts of currents and waves, providing safe harbors, improving sport-fishing opportunities, and enhancing/restoring fish spawning habitats. Most reefs in the lakes themselves were incidental (not created purposely for fish habitat) or built to improve local sport fishing, whereas reefs in tributaries and connecting channels were more frequently built to benefit fish spawning. Levels of assessment of reef performance varied; but long-term monitoring was uncommon as was assessment of physical attributes. Artificial reefs were often successful at attracting recreational species and spawning fish; however, population-level benefits of artificial reefs are unclear. Stressors such as sedimentation and bio-fouling can limit the effectiveness of artificial reefs as spawning enhancement tools. Our investigation underscores the need to develop standard protocols for monitoring the biological and physical attributes of artificial structures. Further, long-term monitoring is needed to assess the benefits of artificial reefs to fish populations and inform future artificial reef projects.

Linking Wave Forcing to Coral Cover and Structural Complexity Across Coral Reef Flats

NASA Astrophysics Data System (ADS)

Harris, D. L.; Rovere, A.; Parravicini, V.; Casella, E.

2015-12-01

The hydrodynamic regime is a significant component in the geomorphic and ecological development of coral reefs. The energy gradients and flow conditions generated by the breaking and transformation of waves across coral reef crests and flats drive changes in geomorphic structure, and coral growth form and distribution. One of the key aspects in regulating the wave energy propagating across reef flats is the rugosity or roughness of the benthic substrate. Rugosity and structural complexity of coral reefs is also a key indicator of species diversity, ecological functioning, and reef health. However, the links between reef rugosity, coral species distribution and abundance, and hydrodynamic forcing are poorly understood. In this study we examine this relationship by using high resolution measurement of waves in the surf zone and coral reef benthic structure.Pressure transducers (logging at 4 Hz) were deployed in cross reef transects at two sites (Tiahura and Ha'apiti reef systems) in Moorea, French Polynesia with wave characteristics determined on a wave by wave basis. A one dimensional hydrodynamic model (XBeach) was calibrated from this data to determine wave processes on the reef flats under average conditions. Transects of the reef benthic structure were conducted using photographic analysis and the three dimensional reef surface was constructed using structure from motion procedures. From this analysis reef rugosity, changes in coral genus and growth form, and across reef shifts in benthic community were determined. The results show clear changes in benthic assemblages along wave energy gradients with some indication of threshold values of wave induced bed shear stress above which live coral cover was reduced. Reef rugosity was shown to be significantly along the cross-reef transect which has important implications for accurate assessment of wave dissipation across coral reef flats. Links between reef rugosity and coral genus were also observed and may indicate that some coral species are crucial in maintaining the structural diversity of coral reefs.

Measuring, interpreting, and responding to changes in coral reefs: A challenge for biologists, geologist, and managers

USGS Publications Warehouse

Rogers, Caroline S.; Miller, Jeff; Hubbard, Dennis K.; Rogers, Caroline S.; Lipps, Jere H.; Stanley, George D.

2016-01-01

What, exactly, is a coral reef? And how have the world’s reefs changed in the last several decades? What are the stressors undermining reef structure and function? Given the predicted effects of climate change, do reefs have a future? Is it possible to “manage” coral reefs for resilience? What can coral reef scientists contribute to improve protection and management of coral reefs? What insights can biologists and geologists provide regarding the persistence of coral reefs on a human timescale? What is reef change to a biologist… to a geologist?Clearly, there are many challenging questions. In this chapter, we present some of our thoughts on monitoring and management of coral reefs in US national parks in the Caribbean and western Atlantic based on our experience as members of monitoring teams. We reflect on the need to characterize and evaluate reefs, on how to conduct high-quality monitoring programs, and on what we can learn from biological and geological experiments and investigations. We explore the possibility that specific steps can be taken to “manage” coral reefs for greater resilience.

Wave- and tidally-driven flow and sediment flux across a fringing coral reef: Southern Molokai, Hawaii

USGS Publications Warehouse

Storlazzi, C.D.; Ogston, A.S.; Bothner, Michael H.; Field, M.E.; Presto, M.K.

2004-01-01

The fringing coral reef off the south coast of Molokai, Hawaii is currently being studied as part of a US Geological Survey (USGS) multi-disciplinary project that focuses on geologic and oceanographic processes that affect coral reef systems. For this investigation, four instrument packages were deployed across the fringing coral reef during the summer of 2001 to understand the processes governing fine-grained terrestrial sediment suspension on the shallow reef flat (h=1m) and its advection across the reef crest and onto the deeper fore reef. The time-series measurements suggest the following conceptual model of water and fine-grained sediment transport across the reef: Relatively cool, clear water flows up onto the reef flat during flooding tides. At high tide, more deep-water wave energy is able to propagate onto the reef flat and larger Trade wind-driven waves can develop on the reef flat, thereby increasing sediment suspension. Trade wind-driven surface currents and wave breaking at the reef crest cause setup of water on the reef flat, further increasing the water depth and enhancing the development of depth-limited waves and sediment suspension. As the tide ebbs, the water and associated suspended sediment on the reef flat drains off the reef flat and is advected offshore and to the west by Trade wind- and tidally- driven currents. Observations on the fore reef show relatively high turbidity throughout the water column during the ebb tide. It therefore appears that high suspended sediment concentrations on the deeper fore reef, where active coral growth is at a maximum, are dynamically linked to processes on the muddy, shallow reef flat.

Hydrothermal activity and its paleoecological implications in the latest Miocene to Middle Pleistocene lacustrine environments of the Baza Basin (Betic Cordillera, SE Spain)

NASA Astrophysics Data System (ADS)

García-Aguilar, José Manuel; Guerra-Merchán, Antonio; Serrano, Francisco; Palmqvist, Paul; Flores-Moya, Antonio; Martínez-Navarro, Bienvenido

2014-07-01

The continental sedimentary record of the Baza Basin (Guadix-Baza Depression, Betic Cordillera, SE Spain) shows six sedimentary units of lacustrine origin deposited from the latest Miocene to the Middle Pleistocene. Depending on the interval considered, the lacustrine deposits are mainly composed of marls, carbonates or gypsiferous evaporites, showing lithological, mineralogical and geochemical features (i.e., magnesium, strontium and sulfur contents, celestine deposits and travertine growths) that are evidence of intense, tectonically-induced hydrothermal activity. According to the high concentrations of strontium and sulfur as well as the abundance of travertines and magnesium clays, the supply of hot waters was greater during the Zanclean, the Gelasian and the Calabrian, as a result of tectonic activity. Hydrothermal activity has continued until the present time and is responsible of the hot springs that are nowadays active in the Guadix-Baza Depression. The paleoenvironmental consequences of these sublacustrine hot springs were that during some intervals the lakes maintained a relatively permanent water table, not subject to periodic desiccations in the dry season, and warmer temperatures throughout the year. This resulted in a high level of organic productivity, especially for the Calabrian, which allowed the development of a rich and well diversified mammalian community, similar to those of modern African savannas with tree patches. In this mild environment, the permanent water sheet favored the presence of drought intolerant megaherbivores such as the giant extinct hippo Hippopotamus antiquus. The high standing crop biomass of ungulates resulted in the availability of abundant carcasses for scavengers such as hyenas and hominins, which explains the very high densities of skeletal remains preserved in the sediments distributed along the lake surroundings.

Oyster reef restoration in the northern Gulf of Mexico: extent, methods and outcomes

USGS Publications Warehouse

LaPeyre, Megan K.; Furlong, Jessica N.; Brown, Laura A.; Piazza, Bryan P.; Brown, Ken

2014-01-01

Shellfish reef restoration to support ecological services has become more common in recent decades, driven by increasing awareness of the functional decline of shellfish systems. Maximizing restoration benefits and increasing efficiency of shellfish restoration activities would greatly benefit from understanding and measurement of system responses to management activities. This project (1) compiles a database of northern Gulf of Mexico inshore artificial oyster reefs created for restoration purposes, and (2) quantitatively assesses a subset of reefs to determine project outcomes. We documented 259 artificial inshore reefs created for ecological restoration. Information on reef material, reef design and monitoring was located for 94, 43 and 20% of the reefs identified. To quantify restoration success, we used diver surveys to quantitatively sample oyster density and substrate volume of 11 created reefs across the coast (7 with rock; 4 with shell), paired with 7 historic reefs. Reefs were defined as fully successful if there were live oysters, and partially successful if there was hard substrate. Of these created reefs, 73% were fully successful, while 82% were partially successful. These data highlight that critical information related to reef design, cost, and success remain difficult to find and are generally inaccessible or lost, ultimately hindering efforts to maximize restoration success rates. Maintenance of reef creation information data, development of standard reef performance measures, and inclusion of material and reef design testing within reef creation projects would be highly beneficial in implementing adaptive management. Adaptive management protocols seek specifically to maximize short and long-term restoration success, but are critically dependent on tracking and measuring system responses to management activities.

Response of coral reefs to climate change: Expansion and demise of the southernmost Pacific coral reef

NASA Astrophysics Data System (ADS)

Woodroffe, Colin D.; Brooke, Brendan P.; Linklater, Michelle; Kennedy, David M.; Jones, Brian G.; Buchanan, Cameron; Mleczko, Richard; Hua, Quan; Zhao, Jian-xin

2010-08-01

Coral reefs track sea level and are particularly sensitive to changes in climate. Reefs are threatened by global warming, with many experiencing increased coral bleaching. Warmer sea surface temperatures might enable reef expansion into mid latitudes. Here we report multibeam sonar and coring that reveal an extensive relict coral reef around Lord Howe Island, which is fringed by the southernmost reef in the Pacific Ocean. The relict reef, in water depths of 25-50 m, flourished in early Holocene and covered an area more than 20 times larger than the modern reef. Radiocarbon and uranium-series dating indicates that corals grew between 9000 and 7000 years ago. The reef was subsequently drowned, and backstepped to its modern limited extent. This relict reef, with localised re-establishment of corals in the past three millennia, could become a substrate for reef expansion in response to warmer temperatures, anticipated later this century and beyond, if corals are able to recolonise its surface.

Quaternary onset and evolution of Kimberley coral reefs (Northwest Australia) revealed by high-resolution seismic imaging

NASA Astrophysics Data System (ADS)

Bufarale, Giada; Collins, Lindsay B.; O'Leary, Michael J.; Stevens, Alexandra; Kordi, Moataz; Solihuddin, Tubagus

2016-07-01

The inner shelf Kimberley Bioregion of Northwest Australia is characterised by a macrotidal setting where prolific coral reefs growth as developed around a complex drowned landscape and is considered a biodiversity "hotspot". High-resolution shallow seismic studies were conducted across various reef settings in the Kimberley (Buccaneer Archipelago, north of Dampier Peninsula, latitude: between 16°40‧S and 16°00‧S) to evaluate stratigraphic evolution, interaction with different substrates, morphological patterns and distribution. Reef sites were chosen to assess most of the reef types present, particularly high intertidal planar reefs and fringing reefs. Reef internal acoustic reflectors were identified according to their shape, stratigraphic position and characteristics. Two main seismic horizons were identified marking the boundaries between Holocene reef (Marine Isotope Stage 1, MIS 1, last 12 ky), commonly 10-20 m thick, and MIS 5 (Last Interglacial, LIG, ~120 ky, up to 12 m thick) and Proterozoic rock foundation over which Quaternary reef growth occurred. Within the Holocene Reef unit, at least three minor internal reflectors, generally discontinuous, subparallel to the reef flat were recognised and interpreted as either growth hiatuses or a change of the coral framework or sediment matrix. The LIG reefs represent a new northernmost occurrence along the Western Australian coast. The research presented here achieved the first regional geophysical study of the Kimberley reefs. Subbottom profiles demonstrated that the surveyed reefs are characterised by a multi-stage reef buildup, indicating that coral growth occurred in the Kimberley during previous sea level highstands. The data show also that antecedent substrate and regional subsidence have contributed, too, in determining the amount of accommodation available for reef growth and controlling the morphology of the successive reef building stages. Moreover, the study showed that in spite of macrotidal conditions, high-turbidity and frequent high-energy cyclonic events, corals have exhibited prolific reef growth during the Holocene developing significant reef accretionary structures. As a result coral reefs have generating habitat complexity and species diversity in what is a biodiversity hotspot.

Oyster reef restoration in the Northern Gulf of Mexico: effect of artificial substrate and sge on nekton and benthic macroinvertebrate assemblage use

USGS Publications Warehouse

Brown, Laura A.; Furlong, Jessica N.; Brown, Kenneth M.; LaPeyre, Megan K.

2013-01-01

In the northern Gulf of Mexico (GOM), reefs built by eastern oysters, Crassostrea virginica, provide critical habitat within shallow estuaries, and recent efforts have focused on restoring reefs to benefit nekton and benthic macroinvertebrates. We compared nekton and benthic macroinvertebrate assemblages at historic, newly created (<5years) and old (>6years) shell and rock substrate reefs. Using crab traps, gill-nets, otter trawls, cast nets, and benthic macroinvertebrate collectors, 20 shallow reefs (<5m) in the northern GOM were sampled throughout the summer of 2011. We compared nekton and benthic assemblage abundance, diversity and composition across reef types. Except for benthic macroinvertebrate abundance, which was significantly higher on old rock reefs as compared to historic reefs, all reefs were similar to historic reefs, suggesting created reefs provide similar support of nekton and benthic assemblages as historic reefs. To determine refuge value of oyster structure for benthic macroinvertebrates compared to bare bottom, we tested preferences of juvenile crabs across depth and refuge complexity in the presence and absence of adult blue crabs (Callinectes sapidus). Juveniles were more likely to use deep water with predators present only when provided oyster structure. Provision of structural material to support and sustain development of benthic and mobile reef communities may be the most important factor in determining reef value to these assemblages, with biophysical characteristics related to reef location influencing assemblage patterns in areas with structure; if so, appropriately locating created reefs is critical.

Lagoon islets as indicators of recent environmental changes in the South Pacific - The New Caledonian example

NASA Astrophysics Data System (ADS)

Garcin, Manuel; Vendé-Leclerc, Myriam; Maurizot, Pierre; Le Cozannet, Gonéri; Robineau, Bernard; Nicolae-Lerma, Alexandre

2016-07-01

The question of the impacts of climate change and sea level rise on small islands is currently much discussed. The many thousands of Pacific islands in their different contexts (geodynamic, climatic, etc.) and the insufficient data available explain why it is difficult to clearly discern the specific role of climate change in the recent evolution of these islands. To address this question, we investigated the recent changes affecting 21 islets in New Caledonia's lagoon. These islets are either located on small patch-reefs inside the New Caledonia Island lagoon or lie directly on the barrier reef. Based on the studies we conducted (field surveys, reconstruction of changes in the islets over the last decades, shoreline changes) we were able to define a typology of the islets that includes 6 stages and a life expectancy index. Using the life expectancy index, we found that of the 21 islets studied, 19% are in a highly critical situation, meaning they are very likely to be endangered in the short term (within the next few years), 9.5% are in a critical situation, i.e., likely to disappear in the near future and very likely to disappear in the medium term (next few decades), 19% are evolving rapidly, which could lead to their disappearance in the medium term but not in the short term, 9.5% are not endangered in the short and medium term and 43% are not endangered at all (stable or accreting, large area, relatively higher altitude). In this context, the rise in sea level induced by climate change is an adverse factor which is likely to lower the resilience of the islets to erosion processes. Other factors like the degradation of the reef ecosystem due to variations in ocean salinity, temperature and acidity, lower sediment stocks on the beaches and foreshores, human visitors, coastal development and so on are other adverse factors that could modify the capacity for resilience of these islets. Due to their variety and sensitivity, New Caledonia's islets could thus serve as integrative indicators of environmental and climatic change for New Caledonia.

Reef Education Evaluation: Environmental Knowledge and Reef Experience

ERIC Educational Resources Information Center

Stepath, Carl M.

2005-01-01

Background: The Reef education evaluation: environmental knowledge and reef experience report concerns PhD research about marine education, and the investigation of learning with high school students and the effect of coral reef monitoring marine experiential education interventions. The effectiveness of classroom learning and reef trips were…

The Quaternary Environmental Change in the Northeast of Quintana Roo, Mexico:The Paleopedological Proxies

NASA Astrophysics Data System (ADS)

Cabadas Báez, H. V.; Sedov, S.; Solleiro Rebolledo, E.

2010-03-01

The Yucatán Peninsula, located in the southeast part of Mexico, is characterized to be an extended and low altitude platform constituted by calcareous rocks. These rocks are mainly limestones formed since Cretaceous under a marine shelf environment. In the northeast coast, the youngest sediments are found, as products of Quaternary sea level changes. We studied various profiles in quarries, following north-south transect in the Yucatan coast, near Cancún. In such profiles a sequence consisting of different kind of calcareous sediments and a soil in the surface were analyzed. The base of the sequence is constituted by a petrocalcic horizon (calcrete) that was formed during the last interglacial, 125,000 yrs. ago. Under the calcrete, a transgressive sequence appears with calcareous sediments of lagoon and reef facies. The uppermost part consists of dune-like sediments with crossed stratification overlied by another petrocalcic horizon, maybe formed during the Pleistocene-Holocene transition. Soils of the Yucatan Peninsula are very thin, rich in organic matter, neutral and well structured, and their image do not correspond to that found in tropical soils (deep, strongly weathered, leached). They are directly associated with the dune sediment dissolution because are infilling the "space" generated by rock dissolution. Calcrete is always in the uppermost part, but is broken and crossed by soil. This sequence reveals some aspects of the environmental dynamic during Late Pleistocene-Holocene. First, a dryer environment is assumed due to the presence of the calcrete in the base. During the glacial period, a transgressive environment prevailed and marine calcareous sedimentation started. During Last Glacial Maximum a regression occurred, the climate was drier and the formation of dune sediments and another calcrete occurred. In the Holocene climate changed shifting toward more humid conditions that produced the modern soil cover, under tropical conditions.

Testing New Proxies for Photosymbiosis in the Fossil Record

NASA Astrophysics Data System (ADS)

Tornabene, C.; Martindale, R. C.; Schaller, M. F.

2015-12-01

Photosymbiosis is a mutualistic relationship that many corals have developed with dinoflagellates called zooxanthellae. The dinoflagellates, of the genus Symbiodinium, photosynthesize and provide corals with most of their energy, while in turn coral hosts live in waters where zooxanthellae have optimal exposure to sunlight. Thanks to this relationship, symbiotic corals calcify faster than non-symbiotic corals. Photosymbiosis is therefore considered the evolutionary innovation that allowed corals to become major reef-builders through geological time.This relationship is extremely difficult to study. Zooxanthellae, which are housed in the coral tissue, are not preserved in fossil coral skeletons, thus determining whether corals had symbionts requires a robust proxy. In order to address this critical question, the goal of this research is to test new proxies for ancient photosymbiosis. Currently the project is focused on assessing the nitrogen (δ15N) isotopes of corals' organic matrices, sensu Muscatine et al. (2005), as well as carbon and oxygen (δ13C, δ18O) isotopes of fossil coral skeletons. Samples from Modern, Pleistocene, Oligocene and Triassic coral skeletons were analyzed to test the validity of these proxies. Coral samples comprise both (interpreted) symbiotic and non-symbiotic fossil corals from the Oligocene and Triassic as well as symbiotic fossil corals from the Modern and Pleistocene to corroborate our findings with the results of Muscatine et al. (2005). Samples were tested for diagenesis through petrographic and scanning electron microscope (SEM) analyses to avoid contamination. Additionally, a novel technique that has not yet been applied to the fossil record was tested. The technique aims to recognize dinosterol, a dinoflagellate biomarker, in both modern and fossil coral samples. The premise of this proxy is that symbiotic corals should contain the dinoflagellate biomarker, whereas those lacking symbionts should lack dinosterol. Results from this research will ideally lead to the development of a definitive, quantitative test for whether fossil corals had symbionts.

Late Pleistocene Sea level on the New Jersey Margin: Implications to eustasy and deep-sea temperature

USGS Publications Warehouse

Wright, J.D.; Sheridan, R.E.; Miller, K.G.; Uptegrove, J.; Cramer, B.S.; Browning, J.V.

2009-01-01

We assembled and dated a late Pleistocene sea-level record based on sequence stratigraphy from the New Jersey margin and compared it with published records from fossil uplifted coral reefs in New Guinea, Barbados, and Araki Island, as well as a composite sea-level estimate from scaling of Red Sea isotopic values. Radiocarbon dates, amino acid racemization data, and superposition constrain the ages of large (20-80??m) sea-level falls from New Jersey that correlate with Marine Isotope Chrons (MIC) 2, 3b, 4, 5b, and 6 (the past 130??kyr). The sea-level records for MIC 1, 2, 4, 5e, and 6 are similar to those reported from New Guinea, Barbados, Araki, and the Red Sea; some differences exist among records for MIC 3. Our record consistently provides the shallowest sea level estimates for MIC3 (??? 25-60??m below present); it agrees most closely with the New Guinea record of Chappell (2002; ??? 35-70??m), but contrasts with deeper estimates provided by Araki (??? 85-95??m) and the Red Sea (50-90??m). Comparison of eustatic estimates with benthic foraminiferal ??18O records shows that the deep sea cooled ??? 2.5????C between MIC 5e and 5d (??? 120-110??ka) and that near freezing conditions persisted until Termination 1a (14-15??ka). Sea-level variations between MIC 5b and 2 (ca. 90-20??ka) follow a well-accepted 0.1???/10??m linear variation predicted by ice-growth effects on foraminiferal ??18O values. The pattern of deep-sea cooling follows a previously established hysteresis loop between two stable modes of operation. Cold, near freezing deep-water conditions characterize most of the past 130??kyr punctuated only by two warm intervals (the Holocene/MIC 1 and MIC 5e). We link these variations to changes in Northern Component Water (NCW). ?? 2009 Elsevier B.V. All rights reserved.

Encouraging Proximal Relations: Queensland High School Students Go to the Reef

ERIC Educational Resources Information Center

Stepath, Carl; Whitehouse, Hilary

2006-01-01

Background: This article concerns learning with high school students and the effect of snorkeling and coral reef monitoring at the Great Barrier Reef, Australia. The effectiveness of classroom learning, student-reef relationships and reef trips were investigated. Purpose: This paper presents selected student accounts of reef educational…

Effect of Phase Shift from Corals to Zoantharia on Reef Fish Assemblages

PubMed Central

Cruz, Igor C. S.; Loiola, Miguel; Albuquerque, Tiago; Reis, Rodrigo; de Anchieta C. C. Nunes, José; Reimer, James D.; Mizuyama, Masaru; Kikuchi, Ruy K. P.; Creed, Joel C.

2015-01-01

Consequences of reef phase shifts on fish communities remain poorly understood. Studies on the causes, effects and consequences of phase shifts on reef fish communities have only been considered for coral-to-macroalgae shifts. Therefore, there is a large information gap regarding the consequences of novel phase shifts and how these kinds of phase shifts impact on fish assemblages. This study aimed to compare the fish assemblages on reefs under normal conditions (relatively high cover of corals) to those which have shifted to a dominance of the zoantharian Palythoa cf. variabilis on coral reefs in Todos os Santos Bay (TSB), Brazilian eastern coast. We examined eight reefs, where we estimated cover of corals and P. cf. variabilis and coral reef fish richness, abundance and body size. Fish richness differed significantly between normal reefs (48 species) and phase-shift reefs (38 species), a 20% reduction in species. However there was no difference in fish abundance between normal and phase shift reefs. One fish species, Chaetodon striatus, was significantly less abundant on normal reefs. The differences in fish assemblages between different reef phases was due to differences in trophic groups of fish; on normal reefs carnivorous fishes were more abundant, while on phase shift reefs mobile invertivores dominated. PMID:25629532

The structure and composition of Holocene coral reefs in the Middle Florida Keys

USGS Publications Warehouse

Toth, Lauren T.; Stathakopoulos, Anastasios; Kuffner, Ilsa B.

2016-07-21

The Florida Keys reef tract (FKRT) is the largest coral-reef ecosystem in the continental United States. The modern FKRT extends for 362 kilometers along the coast of South Florida from Dry Tortugas National Park in the southwest, through the Florida Keys National Marine Sanctuary (FKNMS), to Fowey Rocks reef in Biscayne National Park in the northeast. Most reefs along the FKRT are sheltered by the exposed islands of the Florida Keys; however, large channels are located between the islands of the Middle Keys. These openings allow for tidal transport of water from Florida Bay onto reefs in the area. The characteristics of the water masses coming from Florida Bay, which can experience broad swings in temperature, salinity, nutrients, and turbidity over short periods of time, are generally unfavorable or “inimical” to coral growth and reef development.Although reef habitats are ubiquitous throughout most of the Upper and Lower Keys, relatively few modern reefs exist in the Middle Keys most likely because of the impacts of inimical waters from Florida Bay. The reefs that are present in the Middle Keys generally are poorly developed compared with reefs elsewhere in the region. For example, Acropora palmata has been the dominant coral on shallow-water reefs in the Caribbean over the last 1.5 million years until populations of the coral declined throughout the region in recent decades. Although A. palmata was historically abundant in the Florida Keys, it was conspicuously absent from reefs in the Middle Keys. Instead, contemporary reefs in the Middle Keys have been dominated by occasional massive (that is, boulder or head) corals and, more often, small, non-reef-building corals.Holocene reef cores have been collected from many locations along the FKRT; however, despite the potential importance of the history of reefs in the Middle Florida Keys to our understanding of the environmental controls on reef development throughout the FKRT, there are currently no published records of the Holocene history of reefs in the region. The objectives of the present study were to (1) provide general descriptions of unpublished core records from Alligator Reef and (2) collect and describe new Holocene reef cores from two additional locations in the Middle Keys: Sombrero and Tennessee Reefs.

Higher species richness of octocorals in the upper mesophotic zone in Eilat (Gulf of Aqaba) compared to shallower reef zones

NASA Astrophysics Data System (ADS)

Shoham, Erez; Benayahu, Yehuda

2017-03-01

Mesophotic coral-reef ecosystems (MCEs), which comprise the light-dependent communities of corals and other organisms found at depths between 30 and 150 m, have received very little study to date. However, current technological advances, such as remotely operated vehicles and closed-circuit rebreather diving, now enable their thorough investigation. Following the reef-building stony corals, octocorals are the second most common benthic component on many shallow reefs and a major component on deep reefs, the Red Sea included. This study is the first to examine octocoral community features on upper MCEs based on species-level identification and to compare them with the shallower reef zones. The study was carried out at Eilat (Gulf of Aqaba, northern Red Sea), comparing octocoral communities at two mesophotic reefs (30-45 m) and two shallow reef zones (reef flat and upper fore-reef) by belt transects. A total of 30 octocoral species were identified, with higher species richness on the upper MCEs compared to the shallower reefs. Although the MCEs were found to host a higher number of species than the shallower reefs, both featured a similar diversity. Each reef zone revealed a unique octocoral species composition and distinct community structure, with only 16% of the species shared by both the MCEs and the shallower reefs. This study has revealed an almost exclusive dominance of zooxanthellate species at the studied upper MCE reefs, thus indicating an adequate light regime for photosynthesis there. The findings should encourage similar studies on other reefs, aimed at understanding the spatiotemporal features and ecological role of octocorals in reef ecosystems down to the deepest limit of the MCEs.

Wave Dissipation on Low- to Super-Energy Coral Reefs

NASA Astrophysics Data System (ADS)

Harris, D. L.

2016-02-01

Coral reefs are valuable, complex and bio-diverse ecosystems and are also known to be one of the most effective barriers to swell events in coastal environments. Previous research has found coral reefs to be remarkably efficient in removing most of the wave energy during the initial breaking and transformation on the reef flats. The rate of dissipation is so rapid that coral reefs have been referred to as rougher than any known coastal barrier. The dissipation of wave energy across reef flats is crucial in maintaining the relatively low-energy conditions in the back reef and lagoonal environments providing vital protection to adjacent beach or coastal regions from cyclone and storm events. A shift in the regulation of wave energy by reef flats could have catastrophic consequences ecologically, socially, and economically. This study examined the dissipation of wave energy during two swell events in Tahiti and Moorea, French Polyesia. Field sites were chosen in varying degrees of exposure and geomorphology from low-energy protected sites (Tiahura, Moorea) to super-energy sites (Teahupo'o, Tahiti). Waves were measured during two moderate to large swell events in cross reef transects using short-term high-resolution pressure transducers. Wave conditions were found to be similar in all back reef locations despite the very different wave exposure at each reef site. However, wave conditions on the reef flats were different and mirrored the variation in wave exposure with depth over the reef flat the primary regulator of reef flat wave height. These results indicate that coral reef flats evolve morphodynamically with the wave climate, which creates coral reef geomorphologies capable of dissipating wave energy that results in similar back reef wave conditions regardless of the offshore wave climate.

The relative importance of local retention and inter-reef dispersal of neutrally buoyant material on coral reefs

NASA Astrophysics Data System (ADS)

Black, Kerry P.

1993-03-01

Reef-scale, eddy-resolving numerical models are applied to discriminate between local trapping of neutrally buoyant passive material coming from a natal reef versus trapping of this material on reefs downstream. A hydrodynamic model is coupled with a Lagrangian (nongridded) dispersal simulation to map the movement of material such as passive larvae within and between natural reefs. To simplify the interpretation, a number of schematic reef shapes, sizes and spacings were devised to represent the most common cases typifying Australia's Great Barrier Reef. Prior investigations have shown that coral reefs on the Great Barrier Reef may retain material for times equivalent to the pelagic dispersal period of many species. This paper explores whether larvae are more likely to settle on the natal reef, settle downstream or fail to settle at all. The modelling neglects active larval behaviour and treats the vertically well-mixed case of notionally weightless particles only. The crown-of-thorns starfish larvae with a pelagic dispersal period of at least 10 days are one example of this case. Larvae are most likely to be found near the natal reef rather than its downstream neighbour, mostly because the currents take the vertically well-mixed material around, rather than onto, the downstream reef. Of all the simulations, the highest numbers were found on natal reefs (e.g. 8% after 10 days) while downstream numbers mostly varied between 0 and 1% after 10 days. Particle numbers equalised only when spacing between the two reefs was less than the reef length (6 km), or when the downstream reef was in the direct path of the larval stream.

Coral identity underpins architectural complexity on Caribbean reefs.

PubMed

Alvarez-Filip, Lorenzo; Dulvy, Nicholas K; Côte, Isabelle M; Watkinson, Andrew R; Gill, Jennifer A

2011-09-01

The architectural complexity of ecosystems can greatly influence their capacity to support biodiversity and deliver ecosystem services. Understanding the components underlying this complexity can aid the development of effective strategies for ecosystem conservation. Caribbean coral reefs support and protect millions of livelihoods, but recent anthropogenic change is shifting communities toward reefs dominated by stress-resistant coral species, which are often less architecturally complex. With the regionwide decline in reef fish abundance, it is becoming increasingly important to understand changes in coral reef community structure and function. We quantify the influence of coral composition, diversity, and morpho-functional traits on the architectural complexity of reefs across 91 sites at Cozumel, Mexico. Although reef architectural complexity increases with coral cover and species richness, it is highest on sites that are low in taxonomic evenness and dominated by morpho-functionally important, reef-building coral genera, particularly Montastraea. Sites with similar coral community composition also tend to occur on reefs with very similar architectural complexity, suggesting that reef structure tends to be determined by the same key species across sites. Our findings provide support for prioritizing and protecting particular reef types, especially those dominated by key reef-building corals, in order to enhance reef complexity.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cross, S.L.; Lighty, R.G.

Coral-rudist reefs of the Lower Cretaceous Mural limestone, southeastern Arizona, show a pronounced relationship between specific reef facies, primary porosity, and early submarine diagenesis. These large open-shelf reefs differ from the well-studied low-relief rudist buildups, and provide an alternate analog for many Cretaceous reef reservoirs. Arizona buildups have diverse corals, high depositional relief, and a well-developed facies zonation from fore reef to back reef: skeletal grainstone talus, muddy fore reef with branching and lamellar corals, massive reef crest with abundant lamellar corals and sandy matrix, protected thickets of delicate branching corals and large rudist mounds, and a wide sediment apronmore » of well-washed coral, rudist, and benthic foraminiferal sands. These well-exposed outcrops permit a detailed facies comparison of primary interparticle porosity. Porosity as high as 40% in grainstones was occluded by later subsurface cements. Reef-framework interparticle porosity was negligible because fore-reef coral and back-reef rudist facies were infilled by muds, and high-energy reef-crest frameworks were filled by peloidal submarine cement crusts and muddy skeletal sands. These thick crusts coated lamellar corals in cryptic and open reef-crest areas, and are laminated with ripple and draped bed forms that suggest current influence. Similar peloidal crusts and laminated textures are common magnesium-calcite submarine cement features in modern reefs. By documenting specific facies control on early cementation and textural variability, patterns of late-stage subsurface diagenesis and secondary porosity may be more easily explained for Cretaceous reef reservoirs. Significant primary porosity might be retained between sands in back-reef facies and within coral skeletons.« less

Correlation Between Existence of Reef Sharks with Abundance of Reef Fishes in South Waters of Morotai Island (North Moluccas)

NASA Astrophysics Data System (ADS)

Mukharror, Darmawan Ahmad; Tiara Baiti, Isnaini; Ichsan, Muhammad; Pridina, Niomi; Triutami, Sanny

2017-10-01

Despite increasing academic research citation on biology, abundance, and the behavior of the blacktip reef sharks, the influence of reef fish population on the density of reef sharks: Carcharhinus melanopterus and Triaenodon obesus population in its habitat were largely unassessed. This present study examined the correlation between abundance of reef fishes family/species with the population of reef sharks in Southern Waters of Morotai Island. The existence of reef sharks was measured with the Audible Stationary Count (ASC) methods and the abundance of reef fishes was surveyed using Underwater Visual Census (UVC) combined with Diver Operated Video (DOV) census. The coefficient of Determination (R2) was used to investigate the degree of relationships between sharks and the specific reef fishes species. The research from 8th April to 4th June 2015 showed the strong positive correlations between the existence of reef sharks with abundance of reef fishes. The correlation values between Carcharhinus melanopterus/Triaenodon obesus with Chaetodon auriga was 0.9405, blacktip/whitetip reef sharks versus Ctenochaetus striatus was 0.9146, and Carcharhinus melanopterus/Triaenodon obesus to Chaetodon kleinii was 0.8440. As the shark can be worth more alive for shark diving tourism than dead in a fish market, the abundance of these reef fishes was important as an early indication parameter of shark existence in South Water of Morotai Island. In the long term, this highlights the importance of reef fishes abundance management in Morotai Island’s Waters to enable the establishment of appropriate and effective reef sharks conservation.

Poorly cemented coral reefs of the eastern tropical Pacific: possible insights into reef development in a high-CO2 world.

PubMed

Manzello, Derek P; Kleypas, Joan A; Budd, David A; Eakin, C Mark; Glynn, Peter W; Langdon, Chris

2008-07-29

Ocean acidification describes the progressive, global reduction in seawater pH that is currently underway because of the accelerating oceanic uptake of atmospheric CO(2). Acidification is expected to reduce coral reef calcification and increase reef dissolution. Inorganic cementation in reefs describes the precipitation of CaCO(3) that acts to bind framework components and occlude porosity. Little is known about the effects of ocean acidification on reef cementation and whether changes in cementation rates will affect reef resistance to erosion. Coral reefs of the eastern tropical Pacific (ETP) are poorly developed and subject to rapid bioerosion. Upwelling processes mix cool, subthermocline waters with elevated pCO(2) (the partial pressure of CO(2)) and nutrients into the surface layers throughout the ETP. Concerns about ocean acidification have led to the suggestion that this region of naturally low pH waters may serve as a model of coral reef development in a high-CO(2) world. We analyzed seawater chemistry and reef framework samples from multiple reef sites in the ETP and found that a low carbonate saturation state (Omega) and trace abundances of cement are characteristic of these reefs. These low cement abundances may be a factor in the high bioerosion rates previously reported for ETP reefs, although elevated nutrients in upwelled waters may also be limiting cementation and/or stimulating bioerosion. ETP reefs represent a real-world example of coral reef growth in low-Omega waters that provide insights into how the biological-geological interface of coral reef ecosystems will change in a high-CO(2) world.

Storm Surge of Supertyphoon Haiyan (7-9 Nov 2013) on Samar (Philippines) Moved the Largest Boulder Ever Documented for a Recent Storm

NASA Astrophysics Data System (ADS)

Engel, M.; May, S. M.; Brill, D.; Reyes, M.; Brückner, H.

2014-12-01

Supertyphoon Haiyan (local name: Yolanda) struck the Philippines on 7-9 Nov 2013. It constantly reached category 5 (SSH scale) during its crossing of the archipelago. Storm surge heights of more than 7 m, wave heights of up to 5 m, and extensive flooding along the coast are reported. The death toll surpassed 6,000 individuals, and more than 16 M people were affected in total. The massive storm surge, which surprised many residents in particular on Samar and Leyte, also initiated the dislocation of large boulders at the coastline of SE Samar. Since such deposits may indicate maximum flooding distances and flow velocities of extreme wave events over timescales exceeding the era of historical documentation, they have increasingly been explored as a source for coastal hazard assessment. However, there is no clear consensus on differences in transport capacities and boulder field patterns created by storms and tsunamis. Thus, records from recent events provide a pivotal reference for process-related interpretation of other coastal boulder fields. We conducted a geomorphological and sedimentological survey after Haiyan on Leyte, Samar, Negros, and Bantayan. In SE Samar, the largest boulder (~75 m³; 9.0 x 4.5 x 3.5 m³; ~180 t) was shifted for 45 m on an inclined upper intertidal platform behind a Holocene reef by longshore sliding. A clast of ~70 t was moved by saltation and/or rolling for the same distance. A boulder of ~23.5 t was quarried at 2 m a.s.l. (above mean sea level) from the cliff edge of the Pleistocene carbonate platform and transported to a position of 6 m a.s.l. Boulders of up to ~17 t were moved from 6.5 to 10 m a.s.l., 2 m below the highest flood marks. Volumes of the limestone boulders were calculated using DGPS-derived point clouds transferred to ArcGIS. Densities were estimated to be around 2.3 g cm-3 using rock samples and the Archimedean principle. Downward-facing rock pools, grass patches, living barnacles, roots and soil staining on exposed former bottom sides, and fresh wood jammed under the rocks provide unambiguous evidence for subrecent transport and overturning. We conclude that the geological legacy of Haiyan calls for a careful reconsideration of possible storm surge transport where boulders, based on their size, have previously been associated with tsunami impacts and storms have been ruled out to be the cause.

Late Pleistocene Age Model for Site U1460, Perth Basin, SW Australian Shelf: Implications for Leeuwin Current History

NASA Astrophysics Data System (ADS)

Christensen, B. A.; Takayanagi, H.; Petrick, B.; Ishiwa, T.; Henderiks, J.; Groeneveld, J.; Mamo, B. L.; De Vleeschouwer, D.; Auer, G.; Deik, H.; Fulthorpe, C.; Gallagher, S. J.; McHugh, C.; Reuning, L.; Yokoyama, Y.

2017-12-01

The Leeuwin Current (LC) exerts an important control on modern Australian climate, but its onset is not well defined. The LC is the only southward flowing eastern boundary current. Driven by a pressure gradient set up in the Indonesian Throughflow, its warm waters support reefs to 29°S. It is seasonally controlled south of the Western Cape. Determination of the onset of the LC was a major objective of IODP Expedition 356. Expedition 356 drilling on the western Australian margin provides an opportunity to explore depositional patterns and timing in the region influenced by the current. Site U1460 was drilled in 214.5 m w.d. (Gallagher et al., 2017). Integrated calcareous nannofossil and planktonic foraminiferal biostratigraphy places the upper 86.5 m firmly within the late Pleistocene. However, the glacial- interglacial stratigraphy is uncertain because of the complexity of this shelfal depositional environment. Here we present a likely late Pleistocene stratigraphy based on integrated geochemical and paleontological datasets. A benthic foraminifer (Uvigerina peregrina) stable isotope record provides the foundation for the age model and the data are supported by SST estimates based on Tex86 and alkenones. Our age model places MIS 16 between 104 and 99 m-CSF-A, followed by an expanded MIS 15 section (99 - 50 m-CSF-A). We correlate the interval from 50 - 5 m-CSF-A with MIS 14 to MIS 8, with the largest magnitude glacial events (MIS 12, MIS 6) either condensed or represented as depositional hiatuses. A Recent 14C date at 0.34 mbsf constrains the interval from 2 - 0.5 m-CSF-A to MIS 4-3, which is in good agreement with the base of common Emiliania huxleyi (0.09 Ma) at 2.13 m-CSF-A. Thus MIS 5 is equivalent to the interval from 5 to 2 m-CSF-A. The expanded MIS 15 section follows a geometric change from slope to prograding shelf. It is associated with a shift to infaunal benthic foraminiferal assemblages, abundant sponge spicules, and a reduction in CaCO3%, suggesting that the high MIS 15 sedimentation rate results from increased productivity and/or upwelling. Our stable-isotope-based correlation, combined with paleotemperature reconstructions, points to a modern-like LC in operation at 0.6 Ma (MIS 16 onward), following a change in continental margin geometry. Alternative age-depth models are possible, and are also presented.

Project O.R.B (Operation Reef Ball): Creating Artificial Reefs, Educating the Community

NASA Astrophysics Data System (ADS)

Phipps, A.

2012-04-01

The Project O.R.B. (Operation Reef Ball) team at South Plantation High School's Everglades Restoration & Environmental Science Magnet Program is trying to help our ailing south Florida coral reefs by constructing, deploying, and monitoring designed artificial reefs. Students partnered with the Reef Ball Foundation, local concrete companies, state parks, Girl Scouts, Sea Scouts, local universities and environmental agencies to construct concrete reef balls, each weighing approximately 500 lbs (227 kg). Students then deployed two artificial reefs consisting of over 30 concrete reef balls in two sites previously permitted for artificial reef deployment. One artificial reef was placed approximately 1.5 miles (2.4 km) offshore of Golden Beach in Miami-Dade County with the assistance of Florida Atlantic University and their research vessel. A twin reef was deployed at the mouth of the river in Oleta River State Park in Miami. Monitoring and maintenance of the sites is ongoing with semi-annual reports due to the Reef Ball Foundation and DERM (Department of Environmental Resource Management) of Miami-Dade County. A second goal of Project O.R.B. is aligned with the Florida Local Action Strategy, the Southeast Florida Coral Reef Initiative, and the U.S. Coral Reef Task Force, all of which point out the importance of awareness and education as key components to the health of our coral reefs. Project O.R.B. team members developed and published an activity book targeting elementary school students. Outreach events incorporate cascade learning where high school students teach elementary and middle school students about various aspects of coral reefs through interactive "edu-tainment" modules. Attendees learn about water sampling, salinity, beach erosion, surface runoff, water cycle, ocean zones, anatomy of coral, human impact on corals, and characteristics of a well-designed artificial reef. Middle school students snorkel on the artificial reef to witness first-hand the success of this artificial reef. Over 3,000 students have been reached through the educational outreach endeavors of Project O.R.B. This successful STEM project models the benefits of partnerships with universities, local K-12 public schools and community conservation organizations and provides students with authentic learning experiences. Students are able to have a positive impact on their local coral reef environment, their peers and their community through this comprehensive service-learning project.

Australia Great Barrier Reef

NASA Image and Video Library

2001-04-11

The Great Barrier Reef extends for 2,000 kilometers along the northeastern coast of Australia. It is not a single reef, but a vast maze of reefs, passages, and coral cays islands that are part of the reef.

First observations of the structure and megafaunal community of a large Lophelia reef on the Ghanaian shelf (the Gulf of Guinea)

NASA Astrophysics Data System (ADS)

Buhl-Mortensen, L.; Serigstad, B.; Buhl-Mortensen, P.; Olsen, M. N.; Ostrowski, M.; Błażewicz-Paszkowycz, M.; Appoh, E.

2017-03-01

The distribution of cold-water coral reefs is relatively well known in the North-east Atlantic as compared to the Central-east Atlantic, where only a few documentations exist from low latitudes. In 2012 an initial survey was conducted on a reef situated at 400 m depth on the continental shelf off Ghana. The reef corals and fauna were visually documented using a Video Assisted Multi Sampler (VAMS) coupled with an ROV. Here we present the results from three dives on the 1400 m long and 70 m high reef with an ambient temperatures between 9 and 10 °C. The banana shaped reef was oriented perpendicular to the main current, the convex side facing the current and there was no sign of human impact. The great height of the reef is probably a result of undisturbed growth for more than 20,000 years. On the Norwegian continental shelf the largest reefs are around 30 m high and have been aged to 9000 years. The reef morphology resembles that of Northeast Atlantic Lophelia reefs. The main reef building coral was Lophelia pertusa with contribution from Madrepora oculata, Solenosmilia variabilis, and occasional occurrences of Dendrophyllia cf. alternata. The skeleton of Aphrocallistes beatrix (Hexactinellidae) contributed to the reef framework and the reef consisted of 46% coral blocks 22% sediment, 13% coral rubble, 11% sponge skeleton and 8% live corals. A rich megafauna of 31 taxa was recorded and most frequent was Acesta excavate (bivalve), Aphrocallistes beatrix (with an associated Zooanthida on 39% of the colonies), squat lobsters, hydroids and bryozoans. Six fish species were recorded of which the Sebastidae Helicolenus dactylopterus and Nettastoma melanurum were found amongst coral blocks. The reef community showed several similarities with the northern reefs with sponges, Sebastes spp., squat lobsters, and Acesta excavata being common megafauna associates. In contrast the gorgonian corals that are characteristic of the northern reefs seemed to be lacking and Hexactinellidae rather than Demospongia were common on the reef and contributed to the reef framework. Crabs that are uncommon on northern reefs were frequently encountered.

Say what? Coral reef sounds as indicators of community assemblages and reef conditions

NASA Astrophysics Data System (ADS)

Mooney, T. A.; Kaplan, M. B.

2016-02-01

Coral reefs host some of the highest diversity of life on the planet. Unfortunately, reef health and biodiversity is declining or is threatened as a result of climate change and human influences. Tracking these changes is necessary for effective resource management, yet estimating marine biodiversity and tracking trends in ecosystem health is a challenging and expensive task, especially in many pristine reefs which are remote and difficult to access. Many fishes, mammals and invertebrates make sound. These sounds are reflective of a number of vital biological processes and are a cue for settling reef larvae. Biological sounds may be a means to quantify ecosystem health and biodiversity, however the relationship between coral reef soundscapes and the actual taxa present remains largely unknown. This study presents a comparative evaluation of the soundscape of multiple reefs, naturally differing in benthic cover and fish diversity, in the U.S. Virgin Islands National Park. Using multiple recorders per reef we characterized spacio-temporal variation in biological sound production within and among reefs. Analyses of sounds recorded over 4 summer months indicated diel trends in both fish and snapping shrimp acoustic frequency bands with crepuscular peaks at all reefs. There were small but statistically significant acoustic differences among sites on a given reef raising the possibility of potentially localized acoustic habitats. The strength of diel trends in lower, fish-frequency bands were correlated with coral cover and fish density, yet no such relationship was found with shrimp sounds suggesting that fish sounds may be of higher relevance to tracking certain coral reef conditions. These findings indicate that, in spite of considerable variability within reef soundscapes, diel trends in low-frequency sound production reflect reef community assemblages. Further, monitoring soundscapes may be an efficient means of establishing and monitoring reef conditions.

Deep-water sponges (Porifera) from Bonaire and Klein Curaçao, Southern Caribbean.

PubMed

Van Soest, Rob W M; Meesters, Erik H W G; Becking, Leontine E

2014-10-29

Four submersible dives off the coast of Bonaire (Caribbean Netherlands) and Klein Curaçao (Curaçao) to depths of 99.5-242 m, covering lower mesophotic and upper dysphotic zones, yielded 52 sponge specimens belonging to 31 species. Among these we identified 13 species as new to science. These are Plakinastrella stinapa n. sp., Pachastrella pacoi n. sp., Characella pachastrelloides n. sp., Geodia curacaoensis n. sp., Caminus carmabi n. sp., Discodermia adhaerens n. sp., Clathria (Microciona) acarnoides n. sp., Antho (Acarnia) pellita n. sp., Parahigginsia strongylifera n. sp., Calyx magnoculata n. sp., Neopetrosia dutchi n. sp., Neopetrosia ovata n. sp. and Neopetrosia eurystomata n. sp. We also report an euretid hexactinellid, which belongs to the rare genus Verrucocoeloidea, recently described (2014) as V. liberatorii Reiswig & Dohrmann. The remaining 18 already known species are all illustrated by photos of the habit, either in situ or 'on deck', but only briefly characterized in an annotated table to confirm their occurrence in the Southern Caribbean. The habitat investigated-steep limestone rocks, likely representing Pleistocene fossil reefs--is similar to deep-water fossil reefs at Barbados of which the sponges were sampled and studied by Van Soest and Stentoft (1988). A comparison is made between the two localities, showing a high degree of similarity in sponge composition: 53% of the present Bonaire-Klein Curaçao species were also retrieved at Barbados. At the level of higher taxa (genera, families) Bonaire-Klein Curaçao shared approximately 80% of its lower mesophotic and upper dysphotic sponge fauna with Barbados, despite a distance between them of 1000 km, indicating high faunal homogeneity. We also preliminarily compared the shallow-water (euphotic) sponge fauna of Curaçao with the combined data available for the Barbados, Bonaire and Klein Curaçao mesophotic and upper dysphotic sponges, which resulted in the conclusion that the two faunas show only little overlap.

Phylogeography of the reef fish Cephalopholis argus (Epinephelidae) indicates Pleistocene isolation across the Indo-Pacific Barrier with contemporary overlap in The Coral Triangle.

PubMed

Gaither, Michelle R; Bowen, Brian W; Bordenave, Tiana-Rae; Rocha, Luiz A; Newman, Stephen J; Gomez, Juan A; van Herwerden, Lynne; Craig, Matthew T

2011-07-01

The Coral Triangle (CT), bounded by the Philippines, the Malay Peninsula, and New Guinea, is the epicenter of marine biodiversity. Hypotheses that explain the source of this rich biodiversity include 1) the center of origin, 2) the center of accumulation, and 3) the region of overlap. Here we contribute to the debate with a phylogeographic survey of a widely distributed reef fish, the Peacock Grouper (Cephalopholis argus; Epinephelidae) at 21 locations (N = 550) using DNA sequence data from mtDNA cytochrome b and two nuclear introns (gonadotropin-releasing hormone and S7 ribosomal protein). Population structure was significant (ΦST = 0.297, P < 0.001; FST = 0.078, P < 0.001; FST = 0.099, P < 0.001 for the three loci, respectively) among five regions: French Polynesia, the central-west Pacific (Line Islands to northeastern Australia), Indo-Pacific boundary (Bali and Rowley Shoals), eastern Indian Ocean (Cocos/Keeling and Christmas Island), and western Indian Ocean (Diego Garcia, Oman, and Seychelles). A strong signal of isolation by distance was detected in both mtDNA (r = 0.749, P = 0.001) and the combined nuclear loci (r = 0.715, P < 0.001). We detected evidence of population expansion with migration toward the CT. Two clusters of haplotypes were detected in the mtDNA data (d = 0.008), corresponding to the Pacific and Indian Oceans, with a low level of introgression observed outside a mixing zone at the Pacific-Indian boundary. We conclude that the Indo-Pacific Barrier, operating during low sea level associated with glaciation, defines the primary phylogeographic pattern in this species. These data support a scenario of isolation on the scale of 105 year glacial cycles, followed by population expansion toward the CT, and overlap of divergent lineages at the Pacific-Indian boundary. This pattern of isolation, divergence, and subsequent overlap likely contributes to species richness at the adjacent CT and is consistent with the region of overlap hypothesis.

iss009e23808

NASA Image and Video Library

2004-09-20

ISS009-E-23808 (20 September 2004) --- A fringing coral reef in the Red Sea is featured in this image photographed by an Expedition 9 crewmember on the International Space Station (ISS). The Sudanese coast of the Red Sea is a well known destination for divers due to clear water and abundance of coral reefs (or “shia’ab” in Arabic). According to NASA scientists studying the ISS imagery, reefs are formed primarily from precipitation of calcium carbonate by corals; massive reef structures are built over thousands of years of succeeding generations of coral. In the Red Sea, fringing reefs form on shallow shelves of less than 50 meters depth along the coastline. This photograph illustrates the intricate morphology of the reef system located along the coast between Port Sudan to the northwest and the Tokar River delta to the southeast. Close to shore, fringing reefs border the coastline. Farther offshore grows a larger, more complicated barrier reef structure. Different parts of the reef structure show up as variable shades of light blue. Deeper water channels (darker blue) define the boundaries for individual reefs within the greater barrier reef system. Such a complex pattern of reefs may translate into greater ecosystem diversity through a wide variety of local reef environments.

Vessel-to-Reef Projects

EPA Pesticide Factsheets

Using vessels as artificial reefs is an option for disposal. Artificial reefs serve to benefit the environment. Vessel-to-reef projects can follow the best management practices guidance. Guidance are provided for how to clean up vessels for use as reefs.

The siting and environmental change of a high medieval monastery in central German highlands

NASA Astrophysics Data System (ADS)

Büdel, Christian; Tintrup, Angela; Baumhauer, Roland

2017-04-01

The geology of central German highlands is dominated by Triassic sandstones of the Bunter sandstone unit (German: Buntsandstein). These rocks commonly lack of minerals and they are unsuitable for beneficial agriculture. Early settlers in the Spessart highlands in central Germany therefore preferred patches of Pleistocene loess accumulation for the siting of their residences. The occurrence and distribution of this preferred loess-sites at high medieval times is of high interest and still under discussion. The investigated monastery site of Elisabethenzell was founded, developed and abandoned during a short medieval period and in an exposed and delimited area. The investigation of its environmental history and landscape offers insights to the careful decision of the former settlers. Both, historical maps and the data from laser altimetry were assessed in order to compile a comprehensive overview of the monasteries situation. In addition, pedologic, sedimentologic and geomorphologic prospections were conducted and all data was assessed using a geographic information system (GIS). At selected sites ramming core probes, and sections helped to determine specific soil and sediment characteristics. The results show subsoils of mineral-poor sandstones and Pleistocene periglacial layers with a thickness of up to 4-6 meters. The constructional elements of the monastery take advantage of the shape of the Pleistocene landforms, which was observed together with a local melioration of the mostly acidic Cambisols. This is provided by the delimited occurrence of loamy loesses in relictic Luvisols. The meliorated soils coincide with a better availability of water, which is due to the local geomorphology and higher clay contents in underlying Miocene and Pliocene sediments. As a consequence, medieval agriculture and gardening is likely and the landforms reveal preferable areas offering a confined gradation as well as evidence for the prevention of soil erosion. A prospection of soil phosphates also revealed key areas of the former land use. The interpretation of the findings supports the thesis of a carefully selected site, which was situated at a medieval trading route close to the ancestral castle of the Counts of Rieneck, and therefore far from productive soils and water resources. Although, small-scale advantages were optimally occupied in regards of the shape of the monastery site, its soil quality and water supply.

The effectiveness of coral reefs for coastal hazard risk reduction and adaptation

PubMed Central

Ferrario, Filippo; Beck, Michael W.; Storlazzi, Curt D.; Micheli, Fiorenza; Shepard, Christine C.; Airoldi, Laura

2014-01-01

The world’s coastal zones are experiencing rapid development and an increase in storms and flooding. These hazards put coastal communities at heightened risk, which may increase with habitat loss. Here we analyse globally the role and cost effectiveness of coral reefs in risk reduction. Meta-analyses reveal that coral reefs provide substantial protection against natural hazards by reducing wave energy by an average of 97%. Reef crests alone dissipate most of this energy (86%). There are 100 million or more people who may receive risk reduction benefits from reefs or bear hazard mitigation and adaptation costs if reefs are degraded. We show that coral reefs can provide comparable wave attenuation benefits to artificial defences such as breakwaters, and reef defences can be enhanced cost effectively. Reefs face growing threats yet there is opportunity to guide adaptation and hazard mitigation investments towards reef restoration to strengthen this first line of coastal defence. PMID:24825660

The effectiveness of coral reefs for coastal hazard risk reduction and adaptation.

PubMed

Ferrario, Filippo; Beck, Michael W; Storlazzi, Curt D; Micheli, Fiorenza; Shepard, Christine C; Airoldi, Laura

2014-05-13

The world's coastal zones are experiencing rapid development and an increase in storms and flooding. These hazards put coastal communities at heightened risk, which may increase with habitat loss. Here we analyse globally the role and cost effectiveness of coral reefs in risk reduction. Meta-analyses reveal that coral reefs provide substantial protection against natural hazards by reducing wave energy by an average of 97%. Reef crests alone dissipate most of this energy (86%). There are 100 million or more people who may receive risk reduction benefits from reefs or bear hazard mitigation and adaptation costs if reefs are degraded. We show that coral reefs can provide comparable wave attenuation benefits to artificial defences such as breakwaters, and reef defences can be enhanced cost effectively. Reefs face growing threats yet there is opportunity to guide adaptation and hazard mitigation investments towards reef restoration to strengthen this first line of coastal defence.

The effectiveness of coral reefs for coastal hazard risk reduction and adaptation

USGS Publications Warehouse

Ferrario, Filippo; Beck, Michael W.; Storlazzi, Curt D.; Micheli, Fiorenza; Shepard, Christine C.; Airoldi, Laura

2014-01-01

The world’s coastal zones are experiencing rapid development and an increase in storms and flooding. These hazards put coastal communities at heightened risk, which may increase with habitat loss. Here we analyse globally the role and cost effectiveness of coral reefs in risk reduction. Meta-analyses reveal that coral reefs provide substantial protection against natural hazards by reducing wave energy by an average of 97%. Reef crests alone dissipate most of this energy (86%). There are 100 million or more people who may receive risk reduction benefits from reefs or bear hazard mitigation and adaptation costs if reefs are degraded. We show that coral reefs can provide comparable wave attenuation benefits to artificial defences such as breakwaters, and reef defences can be enhanced cost effectively. Reefs face growing threats yet there is opportunity to guide adaptation and hazard mitigation investments towards reef restoration to strengthen this first line of coastal defence.

Reef sharks: recent advances in ecological understanding to inform conservation.

PubMed

Osgood, G J; Baum, J K

2015-12-01

Sharks are increasingly being recognized as important members of coral-reef communities, but their overall conservation status remains uncertain. Nine of the 29 reef-shark species are designated as data deficient in the IUCN Red List, and three-fourths of reef sharks had unknown population trends at the time of their assessment. Fortunately, reef-shark research is on the rise. This new body of research demonstrates reef sharks' high site restriction, fidelity and residency on coral reefs, their broad trophic roles connecting reef communities and their high population genetic structure, all information that should be useful for their management and conservation. Importantly, recent studies on the abundance and population trends of the three classic carcharhinid reef sharks (grey reef shark Carcharhinus amblyrhynchos, blacktip reef shark Carcharhinus melanopterus and whitetip reef shark Triaenodon obesus) may contribute to reassessments identifying them as more vulnerable than currently realized. Because over half of the research effort has focused on only these three reef sharks and the nurse shark Ginglymostoma cirratum in only a few locales, there remain large taxonomic and geographic gaps in reef-shark knowledge. As such, a large portion of reef-shark biodiversity remains uncharacterized despite needs for targeted research identified in their red list assessments. A research agenda for the future should integrate abundance, life history, trophic ecology, genetics, habitat use and movement studies, and expand the breadth of such research to understudied species and localities, in order to better understand the conservation requirements of these species and to motivate effective conservation solutions. © 2015 The Fisheries Society of the British Isles.

New evidence for the barrier reef model, Permian Capitan Reef complex, New Mexico

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kirkland, B.L.; Moore, C.H. Jr.

1990-05-01

Recent paleontologic and petrologic observations suggest that the Capitan Formation was deposited as an organic or ecologic reef that acted as an emergent barrier to incoming wave energy. In outcrops in the Guadalupe Mountains and within Carlsbad Caverns, massive reef boundstone contains a highly diverse assemblage of frame-building and binding organisms. In modern reefs, diversity among frame builders decreases dramatically with depth. Marine cement is abundant in reef boundstone, but limited in back-reef grainstone and packstone. This cementation pattern is similar to that observed in modern emergent barrier reef systems. Based on comparison with modern analogs, these dasycladrominated back-reef sedimentsmore » and their associated biota are indicative of shallow, hypersaline conditions. Few of these dasyclads exhibit broken or abraded segments and some thallus sections are still articulated suggesting that low-energy, hypersaline conditions occurred immediately shelfward of the reef. In addition, large-scale topographic features, such as possible spur and groove structures between Walnut Canyon and Rattlesnake Canyon, and facies geometries, such as the reef to shelf transition, resemble those found in modern shallow-water reefs. The organisms that formed the Capitan Reef appear to have lived in, and responded to, physical and chemical conditions similar to those that control the geometry of modern shallow-water reefs. Like their modern counterparts, they seem to have strongly influenced adjacent environments. In light of this evidence, consideration should be given to either modifying or abandoning the marginal mound model in favor of the originally proposed barrier reef model.« less

Suitable Environmental Ranges for Potential Coral Reef Habitats in the Tropical Ocean

PubMed Central

Guan, Yi; Hohn, Sönke; Merico, Agostino

2015-01-01

Coral reefs are found within a limited range of environmental conditions or tolerance limits. Estimating these limits is a critical prerequisite for understanding the impacts of climate change on the biogeography of coral reefs. Here we used the diagnostic model ReefHab to determine the current environmental tolerance limits for coral reefs and the global distribution of potential coral reef habitats as a function of six factors: temperature, salinity, nitrate, phosphate, aragonite saturation state, and light. To determine these tolerance limits, we extracted maximum and minimum values of all environmental variables in corresponding locations where coral reefs are present. We found that the global, annually averaged tolerance limits for coral reefs are 21.7—29.6 °C for temperature, 28.7—40.4 psu for salinity, 4.51 μmol L-1 for nitrate, 0.63 μmol L-1 for phosphate, and 2.82 for aragonite saturation state. The averaged minimum light intensity in coral reefs is 450 μmol photons m-2 s-1. The global area of potential reef habitats calculated by the model is 330.5 × 103 km2. Compared with previous studies, the tolerance limits for temperature, salinity, and nutrients have not changed much, whereas the minimum value of aragonite saturation in coral reef waters has decreased from 3.28 to 2.82. The potential reef habitat area calculated with ReefHab is about 121×103 km2 larger than the area estimated from the charted reefs, suggesting that the growth potential of coral reefs is higher than currently observed. PMID:26030287

From artificial structures to self-sustaining oyster reefs

NASA Astrophysics Data System (ADS)

Walles, Brenda; Troost, Karin; van den Ende, Douwe; Nieuwhof, Sil; Smaal, Aad C.; Ysebaert, Tom

2016-02-01

Coastal ecosystems are increasingly recognized as essential elements within coastal defence schemes and coastal adaptation. The capacity of coastal ecosystems, like marshes and oyster reefs, to maintain their own habitat and grow with sea-level rise via biophysical feedbacks is seen as an important advantage of such systems compared to man-made hard engineering structures. Providing a suitable substrate for oysters to settle on offers a kick-start for establishment at places where they were lost or are desirable for coastal protection. Accumulation of shell material, through recruitment and growth, is essential to the maintenance of oyster reefs as it provides substrate for new generations (positive feedback loop), forming a self-sustainable structure. Insight in establishment, survival and growth thresholds and knowledge about the population dynamics are necessary to successfully implement oyster reefs in coastal defence schemes. The aim of this paper is to investigate whether artificial Pacific oyster reefs develop into self-sustaining oyster reefs that contribute to coastal protection. Reef development was investigated by studying recruitment, survival and growth rates of oysters on artificial oyster reefs in comparison with nearby natural Pacific oyster reefs. The artificial reef structure successfully offered substrate for settlement of oysters and therefore stimulated reef formation. Reef development, however, was hampered by local sedimentation and increasing tidal emersion. Tidal emersion is an important factor that can be used to predict where artificial oyster reefs have the potential to develop into self-sustaining reefs that could contribute to coastal protection, but it is also a limiting factor in using oyster reefs for coastal protection.

Suitable environmental ranges for potential coral reef habitats in the tropical ocean.

PubMed

Guan, Yi; Hohn, Sönke; Merico, Agostino

2015-01-01

Coral reefs are found within a limited range of environmental conditions or tolerance limits. Estimating these limits is a critical prerequisite for understanding the impacts of climate change on the biogeography of coral reefs. Here we used the diagnostic model ReefHab to determine the current environmental tolerance limits for coral reefs and the global distribution of potential coral reef habitats as a function of six factors: temperature, salinity, nitrate, phosphate, aragonite saturation state, and light. To determine these tolerance limits, we extracted maximum and minimum values of all environmental variables in corresponding locations where coral reefs are present. We found that the global, annually averaged tolerance limits for coral reefs are 21.7-29.6 °C for temperature, 28.7-40.4 psu for salinity, 4.51 μmol L-1 for nitrate, 0.63 μmol L-1 for phosphate, and 2.82 for aragonite saturation state. The averaged minimum light intensity in coral reefs is 450 μmol photons m-2 s-1. The global area of potential reef habitats calculated by the model is 330.5 × 103 km2. Compared with previous studies, the tolerance limits for temperature, salinity, and nutrients have not changed much, whereas the minimum value of aragonite saturation in coral reef waters has decreased from 3.28 to 2.82. The potential reef habitat area calculated with ReefHab is about 121×103 km2 larger than the area estimated from the charted reefs, suggesting that the growth potential of coral reefs is higher than currently observed.

76 FR 64327 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Gulf of Mexico Reef Fish Fishery...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-10-18

... Drum, Reef Fish, Shrimp, and Coral and Coral Reefs Fishery Management Plans (Generic ACL Amendment) for... the Caribbean, Gulf of Mexico, and South Atlantic; Gulf of Mexico Reef Fish Fishery; South Atlantic... management unit in the Fishery Management Plan for Reef Fish Resources of the Gulf of Mexico (Reef Fish FMP...

Coral Reefs: An English Compilation of Activities for Middle School Students.

ERIC Educational Resources Information Center

Walker, Sharon H.; Newton, R. Amanda; Ortiz, Alida

This activity book on coral reefs for middle school students is divided into 10 sections. Section 1 contains the introduction. Section 2 describes what coral reefs are while section 3 describes how coral reefs reproduce and grow. Section 4 discusses where coral reefs are found and section 5 describes life on a coral reef. Section 6 discusses the…

Coral reef resilience through biodiversity

USGS Publications Warehouse

Rogers, Caroline S.

2013-01-01

Irrefutable evidence of coral reef degradation worldwide and increasing pressure from rising seawater temperatures and ocean acidification associated with climate change have led to a focus on reef resilience and a call to “manage” coral reefs for resilience. Ideally, global action to reduce emission of carbon dioxide and other greenhouse gases will be accompanied by local action. Effective management requires reduction of local stressors, identification of the characteristics of resilient reefs, and design of marine protected area networks that include potentially resilient reefs. Future research is needed on how stressors interact, on how climate change will affect corals, fish, and other reef organisms as well as overall biodiversity, and on basic ecological processes such as connectivity. Not all reef species and reefs will respond similarly to local and global stressors. Because reef-building corals and other organisms have some potential to adapt to environmental changes, coral reefs will likely persist in spite of the unprecedented combination of stressors currently affecting them. The biodiversity of coral reefs is the basis for their remarkable beauty and for the benefits they provide to society. The extraordinary complexity of these ecosystems makes it both more difficult to predict their future and more likely they will have a future.

Effects of region, demography, and protection from fishing on batch fecundity of common coral trout ( Plectropomus leopardus)

NASA Astrophysics Data System (ADS)

Carter, Alex B.; Davies, Campbell R.; Mapstone, Bruce D.; Russ, Garry R.; Tobin, Andrew J.; Williams, Ashley J.

2014-09-01

Batch fecundity of female Plectropomus leopardus, a coral reef fish targeted by commercial and recreational fishing, was compared between reefs open to fishing and reefs within no-take marine reserves within three regions of the Great Barrier Reef (GBR), Australia. Length, weight, and age had positive effects on batch fecundity of spawners from northern and central reefs but negligible effects on spawners from southern reefs. Females were least fecund for a given length, weight, and age in the southern GBR. Batch fecundity of a 500-mm fork length female was 430 % greater on central reefs and 207 % greater on northern reefs than on southern reefs. The effects of length and age on batch fecundity did not differ significantly between reserve and fished reefs in any region, but weight-specific fecundity was 100 % greater for large 2.0 kg females on reserve reefs compared with fished reefs in the central GBR. We hypothesize that regional variation in batch fecundity is likely driven by water temperature and prey availability. Significant regional variation in batch fecundity highlights the need for understanding spatial variation in reproductive output where single conservation or fishery management strategies cover large, potentially diverse, spatial scales.

Flow-sediment-oyster interaction around degraded, restored, and reference oyster reefs in Florida's Indian River Lagoon

NASA Astrophysics Data System (ADS)

Kitsikoudis, V.; Kibler, K. M.; Spiering, D. W.

2017-12-01

This study analyzes flow patterns and sediment distributions around three oyster reefs in a bar-built estuarine lagoon. We studied a degraded reef, a recently restored reef, and a reference condition reef with a healthy live oyster community. The restored reef had been regraded and restored with oyster shell mats to aid in recruitment of oyster spat, with the goal of reestablishing a healthy oyster community. Despite the fact that flow-biota-sediment interaction constitutes a blossoming research field, actual field data are sparse and current knowledge emanates from flume studies and numerical modeling. Moreover, the hydraulic effect of restored oyster reefs has not been thoroughly investigated and it is not clear if the flow field and sediment erosion/deposition are similar or diverge from natural reefs. Instantaneous three-dimensional flow velocities were collected on reefs using a Nortek Vectrino Profiler and an acoustic Doppler current profiler (Nortek Aquadopp). The former measured a 2 - 3 cm velocity profile above the oyster bed, while the latter quantified incoming velocities across the flow profile approximately 10 m from the edge of the reef. Flow measurements were conducted during rising tides and are coupled with simultaneous wind speed and direction data. In addition, 20 cm deep sediment cores were retrieved on and off the investigated reefs. Sediment grain size distributions were determined after individual cores were processed for loss on ignition. Incoming flow velocities were as high as 10 cm/s, relatively higher than those recorded close to reefs. Mean and turbulent flow velocities close to the reefs, varied among the investigated sites, despite the similar wind flow conditions offshore. For instance, the measurements at the degraded reef showed decreased wave attenuation and augmented flow velocities compared to the other sites. Boat wakes exhibited a very distinct signal in the flow velocity time-series and significantly increased the approaching flow velocity at the reefs. The oyster roughness height at the restored reef (68 mm) was higher than the roughness at the reference reef (45 mm); however, the variance was higher at the latter. Sediments from degraded reef and the recently restored reef were coarser and contained less organic matter compared to the reference condition reef.

Predicting the Location and Spatial Extent of Submerged Coral Reef Habitat in the Great Barrier Reef World Heritage Area, Australia

PubMed Central

Bridge, Tom; Beaman, Robin; Done, Terry; Webster, Jody

2012-01-01

Aim Coral reef communities occurring in deeper waters have received little research effort compared to their shallow-water counterparts, and even such basic information as their location and extent are currently unknown throughout most of the world. Using the Great Barrier Reef as a case study, habitat suitability modelling is used to predict the distribution of deep-water coral reef communities on the Great Barrier Reef, Australia. We test the effectiveness of a range of geophysical and environmental variables for predicting the location of deep-water coral reef communities on the Great Barrier Reef. Location Great Barrier Reef, Australia. Methods Maximum entropy modelling is used to identify the spatial extent of two broad communities of habitat-forming megabenthos phototrophs and heterotrophs. Models were generated using combinations of geophysical substrate properties derived from multibeam bathymetry and environmental data derived from Bio-ORACLE, combined with georeferenced occurrence records of mesophotic coral communities from autonomous underwater vehicle, remotely operated vehicle and SCUBA surveys. Model results are used to estimate the total amount of mesophotic coral reef habitat on the GBR. Results Our models predict extensive but previously undocumented coral communities occurring both along the continental shelf-edge of the Great Barrier Reef and also on submerged reefs inside the lagoon. Habitat suitability for phototrophs is highest on submerged reefs along the outer-shelf and the deeper flanks of emergent reefs inside the GBR lagoon, while suitability for heterotrophs is highest in the deep waters along the shelf-edge. Models using only geophysical variables consistently outperformed models incorporating environmental data for both phototrophs and heterotrophs. Main Conclusion Extensive submerged coral reef communities that are currently undocumented are likely to occur throughout the Great Barrier Reef. High-quality bathymetry data can be used to identify these reefs, which may play an important role in resilience of the GBR ecosystem to climate change. PMID:23118952

Impacts and recovery from severe tropical cyclone Yasi on the Great Barrier Reef.

PubMed

Beeden, Roger; Maynard, Jeffrey; Puotinen, Marjetta; Marshall, Paul; Dryden, Jen; Goldberg, Jeremy; Williams, Gareth

2015-01-01

Full recovery of coral reefs from tropical cyclone (TC) damage can take decades, making cyclones a major driver of habitat condition where they occur regularly. Since 1985, 44 TCs generated gale force winds (≥17 metres/second) within the Great Barrier Reef Marine Park (GBRMP). Of the hurricane strength TCs (≥H1-Saffir Simpson scale; ≥ category 3 Australian scale), TC Yasi (February, 2011) was the largest. In the weeks after TC Yasi crossed the GBRMP, participating researchers, managers and rangers assessed the extent and severity of reef damage via 841 Reef Health and Impact Surveys at 70 reefs. Records were scaled into five damage levels representing increasingly widespread colony-level damage (1, 2, 3) and reef structural damage (4, 5). Average damage severity was significantly affected by direction (north vs south of the cyclone track), reef shelf position (mid-shelf vs outer-shelf) and habitat type. More outer-shelf reefs suffered structural damage than mid-shelf reefs within 150 km of the track. Structural damage spanned a greater latitudinal range for mid-shelf reefs than outer-shelf reefs (400 vs 300 km). Structural damage was patchily distributed at all distances, but more so as distance from the track increased. Damage extended much further from the track than during other recent intense cyclones that had smaller circulation sizes. Just over 15% (3,834 km2) of the total reef area of the GBRMP is estimated to have sustained some level of coral damage, with ~4% (949 km2) sustaining a degree of structural damage. TC Yasi likely caused the greatest loss of coral cover on the GBR in a 24-hour period since 1985. Severely impacted reefs have started to recover; coral cover increased an average of 4% between 2011 and 2013 at re-surveyed reefs. The in situ assessment of impacts described here is the largest in scale ever conducted on the Great Barrier Reef following a reef health disturbance.

Impacts and Recovery from Severe Tropical Cyclone Yasi on the Great Barrier Reef

PubMed Central

Beeden, Roger; Maynard, Jeffrey; Puotinen, Marjetta; Marshall, Paul; Dryden, Jen; Goldberg, Jeremy; Williams, Gareth

2015-01-01

Full recovery of coral reefs from tropical cyclone (TC) damage can take decades, making cyclones a major driver of habitat condition where they occur regularly. Since 1985, 44 TCs generated gale force winds (≥17 metres/second) within the Great Barrier Reef Marine Park (GBRMP). Of the hurricane strength TCs (≥H1—Saffir Simpson scale; ≥ category 3 Australian scale), TC Yasi (February, 2011) was the largest. In the weeks after TC Yasi crossed the GBRMP, participating researchers, managers and rangers assessed the extent and severity of reef damage via 841 Reef Health and Impact Surveys at 70 reefs. Records were scaled into five damage levels representing increasingly widespread colony-level damage (1, 2, 3) and reef structural damage (4, 5). Average damage severity was significantly affected by direction (north vs south of the cyclone track), reef shelf position (mid-shelf vs outer-shelf) and habitat type. More outer-shelf reefs suffered structural damage than mid-shelf reefs within 150 km of the track. Structural damage spanned a greater latitudinal range for mid-shelf reefs than outer-shelf reefs (400 vs 300 km). Structural damage was patchily distributed at all distances, but more so as distance from the track increased. Damage extended much further from the track than during other recent intense cyclones that had smaller circulation sizes. Just over 15% (3,834 km2) of the total reef area of the GBRMP is estimated to have sustained some level of coral damage, with ~4% (949 km2) sustaining a degree of structural damage. TC Yasi likely caused the greatest loss of coral cover on the GBR in a 24-hour period since 1985. Severely impacted reefs have started to recover; coral cover increased an average of 4% between 2011 and 2013 at re-surveyed reefs. The in situ assessment of impacts described here is the largest in scale ever conducted on the Great Barrier Reef following a reef health disturbance. PMID:25874718

A geological perspective on the degradation and conservation of western Atlantic coral reefs.

PubMed

Kuffner, Ilsa B; Toth, Lauren T

2016-08-01

Continuing coral-reef degradation in the western Atlantic is resulting in loss of ecological and geologic functions of reefs. With the goal of assisting resource managers and stewards of reefs in setting and measuring progress toward realistic goals for coral-reef conservation and restoration, we examined reef degradation in this region from a geological perspective. The importance of ecosystem services provided by coral reefs-as breakwaters that dissipate wave energy and protect shorelines and as providers of habitat for innumerable species-cannot be overstated. However, the few coral species responsible for reef building in the western Atlantic during the last approximately 1.5 million years are not thriving in the 21st century. These species are highly sensitive to abrupt temperature extremes, prone to disease infection, and have low sexual reproductive potential. Their vulnerability and the low functional redundancy of branching corals have led to the low resilience of western Atlantic reef ecosystems. The decrease in live coral cover over the last 50 years highlights the need for study of relict (senescent) reefs, which, from the perspective of coastline protection and habitat structure, may be just as important to conserve as the living coral veneer. Research is needed to characterize the geological processes of bioerosion, reef cementation, and sediment transport as they relate to modern-day changes in reef elevation. For example, although parrotfish remove nuisance macroalgae, possibly promoting coral recruitment, they will not save Atlantic reefs from geological degradation. In fact, these fish are quickly nibbling away significant quantities of Holocene reef framework. The question of how different biota covering dead reefs affect framework resistance to biological and physical erosion needs to be addressed. Monitoring and managing reefs with respect to physical resilience, in addition to ecological resilience, could optimize the expenditure of resources in conserving Atlantic reefs and the services they provide. © 2016 The Authors. Conservation Biology published by Wiley Periodicals, Inc., on behalf of Society for Conservation Biology.

Bottlenecks to coral recovery in the Seychelles

NASA Astrophysics Data System (ADS)

Chong-Seng, K. M.; Graham, N. A. J.; Pratchett, M. S.

2014-06-01

Processes that affect recovery of coral assemblages require investigation because coral reefs are experiencing a diverse array of more frequent disturbances. Potential bottlenecks to coral recovery include limited larval supply, low rates of settlement, and high mortality of new recruits or juvenile corals. We investigated spatial variation in local abundance of scleractinian corals in the Seychelles at three distinct life history stages (recruits, juveniles, and adults) on reefs with differing benthic conditions. Following widespread coral loss due to the 1998 bleaching event, some reefs are recovering (i.e., relatively high scleractinian coral cover: `coral-dominated'), some reefs have low cover of living macrobenthos and unconsolidated rubble substrates (`rubble-dominated'), and some reefs have high cover of macroalgae (`macroalgal-dominated'). Rates of coral recruitment to artificial settlement tiles were similar across all reef conditions, suggesting that larval supply does not explain differential coral recovery across the three reef types. However, acroporid recruits were absent on macroalgal-dominated reefs (0.0 ± 0.0 recruits tile-1) in comparison to coral-dominated reefs (5.2 ± 1.6 recruits tile-1). Juvenile coral colony density was significantly lower on macroalgal-dominated reefs (2.4 ± 1.1 colonies m-2), compared to coral-dominated reefs (16.8 ± 2.4 m-2) and rubble-dominated reefs (33.1 ± 7.3 m-2), suggesting that macroalgal-dominated reefs have either a bottleneck to successful settlement on the natural substrates or a high post-settlement mortality bottleneck. Rubble-dominated reefs had very low cover of adult corals (10.0 ± 1.7 %) compared to coral-dominated reefs (33.4 ± 3.6 %) despite no statistical difference in their juvenile coral densities. A bottleneck caused by low juvenile colony survivorship on unconsolidated rubble-dominated reefs is possible, or alternatively, recruitment to rubble-dominated reefs has only recently begun. This study identified bottlenecks to recovery of coral assemblages that varied depending on post-disturbance habitat condition.

Healthy coral reefs may assure coastal protection in face of climate change related sea level rise

NASA Astrophysics Data System (ADS)

Harris, D. L.; Rovere, A.; Parravicini, V.; Casella, E.; Canavesio, R.; Collin, A.

2016-12-01

Coral reefs are diverse ecosystems that support millions of people worldwide providing crucial services, of which, coastal protection is one of the most relevant. The efficiency of coral reefs in protecting coastlines and dissipating waves is directly linked to the cover of living corals and three dimensional reef structural complexity. Climate change and human impacts are leading to severe global reductions in live coral cover, posing serious concerns regarding the capacity of degraded reef systems in protecting tropical coastal regions. Although it is known that the loss of structurally complex reefs may lead to greater erosion of coastlines, this process has rarely been quantified and it is still unknown whether the maintenance of healthy reefs through conservation will be enough to guarantee coastal protection during rising sea levels. We show that a significant loss of wave dissipation and a subsequent increase in back-reef wave height (up to 5 times present wave height) could occur even at present sea level if living corals are lost and reef structural complexity is reduced. Yet we also show that healthy reefs, measured by structural complexity and efficiency of vertical reef accretion, may maintain their present capacity of wave dissipation even under rising sea levels. Our results indicate that the health of coral reefs and not sea level rise will be the major determinant of the coastal protection services provided by coral reefs and calls for investments into coral reef conservation to ensure the future protection of tropical coastal communities.

The characteristics and dynamics of wave-driven flow across a platform coral reef in the Red Sea

NASA Astrophysics Data System (ADS)

Lentz, S. J.; Churchill, J. H.; Davis, K. A.; Farrar, J. T.; Pineda, J.; Starczak, V.

2016-02-01

Current dynamics across a platform reef in the Red Sea near Jeddah, Saudi Arabia, are examined using 18 months of current profile, pressure, surface wave, and wind observations. The platform reef is 700 m long, 200 m across with spatial and temporal variations in water depth over the reef ranging from 0.6 to 1.6 m. Surface waves breaking at the seaward edge of the reef cause a 2-10 cm setup of sea level that drives cross-reef currents of 5-20 cm s-1. Bottom stress is a significant component of the wave setup balance in the surf zone. Over the reef flat, where waves are not breaking, the cross-reef pressure gradient associated with wave setup is balanced by bottom stress. The quadratic drag coefficient for the depth-average flow decreases with increasing water depth from Cda = 0.17 in 0.4 m of water to Cda = 0.03 in 1.2 m of water. The observed dependence of the drag coefficient on water depth is consistent with open-channel flow theory and a hydrodynamic roughness of zo = 0.06 m. A simple one-dimensional model driven by incident surface waves and wind stress accurately reproduces the observed depth-averaged cross-reef currents and a portion of the weaker along-reef currents over the focus reef and two other Red Sea platform reefs. The model indicates the cross-reef current is wave forced and the along-reef current is partially wind forced.

Geomorphology of unique reefs on the western Canadian shelf: sponge reefs mapped by multibeam bathymetry

NASA Astrophysics Data System (ADS)

Conway, Kim W.; Barrie, J. Vaughn; Krautter, Manfred

2005-09-01

Multibeam imagery of siliceous sponge reefs (Hexactinellida, Hexactinosida) reveals the setting, form, and organization of five reef complexes on the western Canadian continental shelf. The reefs are built by framework skeleton sponges which trap clay-rich sediments resulting in a distinctive pattern of low intensity backscatter from the reefs that colonize more reflective glacial sediments of higher backscatter intensity. Bathymetry and backscatter maps show the distribution and form of reefs in two large complexes in the Queen Charlotte Basin (QCB) covering hundreds of km2, and three smaller reef complexes in the Georgia Basin (GB). Ridges up to 7 km long and 21 m in height, together with diversely shaped, coalescing bioherms and biostromes form the principal reef shape in the QCB whereas chains of wave-form, streamlined mounds up to 14 m in height have developed in the GB. Reef initiation is dependent on the distribution of high backscatter-intensity relict glacial surfaces, and the variation in reef complex morphology is probably the result of tidally driven, near seabed currents.

Evidence from aerial photography of structural loss of coral reefs at Barbados, West Indies

NASA Astrophysics Data System (ADS)

Lewis, J.

2002-04-01

In response to concerns about widespread degradation of coral reefs at Barbados, West Indies, over the past two decades, maps and planimetric areas of 20 fringing coral reefs were estimated from enlargements of aerial photographs of the island, using geographic information system analysis. There were statistically significant reductions in reef areas over a 40-year period from 1950 to 1991. Areal losses exceeding measurement and boundary interpretation errors of 10% were detected on eight of the 20 reefs. Ground validation carried out by divers on six of the reefs confirmed physical losses of reef structures and accumulation of rubble and sand substrata at sites where substantial planimetric area loss was detected on aerial photographs. Structural losses occurred along the "spur and groove" system of the reef-seaward edge, within deep channels or breaches in the reef front, and along the flanks or ends of reefs. The location and nature of the observed losses suggest that storm damage and seasonal alterations in beach morphology are the two most important factors contributing to geomorphological structural loss of the reefs.

Fishing down the largest coral reef fish species.

PubMed

Fenner, Douglas

2014-07-15

Studies on remote, uninhabited, near-pristine reefs have revealed surprisingly large populations of large reef fish. Locations such as the northwestern Hawaiian Islands, northern Marianas Islands, Line Islands, U.S. remote Pacific Islands, Cocos-Keeling Atoll and Chagos archipelago have much higher reef fish biomass than islands and reefs near people. Much of the high biomass of most remote reef fish communities lies in the largest species, such as sharks, bumphead parrots, giant trevally, and humphead wrasse. Some, such as sharks and giant trevally, are apex predators, but others such as bumphead parrots and humphead wrasse, are not. At many locations, decreases in large reef fish species have been attributed to fishing. Fishing is well known to remove the largest fish first, and a quantitative measure of vulnerability to fishing indicates that large reef fish species are much more vulnerable to fishing than small fish. The removal of large reef fish by fishing parallels the extinction of terrestrial megafauna by early humans. However large reef fish have great value for various ecological roles and for reef tourism. Copyright © 2014 Elsevier Ltd. All rights reserved.

43 CFR Appendix II to Part 11 - Format for Data Inputs and Modifications to the NRDAM/CME

Code of Federal Regulations, 2012 CFR

2012-10-01

... not contain vegetation (e.g., wetland, seagrass, or kelp) or invertebrate reef (e.g., coral reef) and... invertebrate reef (e.g., coral reef) and is classified as “seaward” in Table 6.2, Volume I of the NRDAM/CME... invertebrate reef (e.g., coral reef). Tidal current—currents caused by alternating rise and fall of the sea...

Bleaching drives collapse in reef carbonate budgets and reef growth potential on southern Maldives reefs

NASA Astrophysics Data System (ADS)

Perry, C. T.; Morgan, K. M.

2017-01-01

Sea-surface temperature (SST) warming events, which are projected to increase in frequency and intensity with climate change, represent major threats to coral reefs. How these events impact reef carbonate budgets, and thus the capacity of reefs to sustain vertical growth under rising sea levels, remains poorly quantified. Here we quantify the magnitude of changes that followed the ENSO-induced SST warming that affected the Indian Ocean region in mid-2016. Resultant coral bleaching caused an average 75% reduction in coral cover (present mean 6.2%). Most critically we report major declines in shallow fore-reef carbonate budgets, these shifting from strongly net positive (mean 5.92 G, where G = kg CaCO3 m-2 yr-1) to strongly net negative (mean -2.96 G). These changes have driven major reductions in reef growth potential, which have declined from an average 4.2 to -0.4 mm yr-1. Thus these shallow fore-reef habitats are now in a phase of net erosion. Based on past bleaching recovery trajectories, and predicted increases in bleaching frequency, we predict a prolonged period of suppressed budget and reef growth states. This will limit reef capacity to track IPCC projections of sea-level rise, thus limiting the natural breakwater capacity of these reefs and threatening reef island stability.

Bleaching drives collapse in reef carbonate budgets and reef growth potential on southern Maldives reefs.

PubMed

Perry, C T; Morgan, K M

2017-01-13

Sea-surface temperature (SST) warming events, which are projected to increase in frequency and intensity with climate change, represent major threats to coral reefs. How these events impact reef carbonate budgets, and thus the capacity of reefs to sustain vertical growth under rising sea levels, remains poorly quantified. Here we quantify the magnitude of changes that followed the ENSO-induced SST warming that affected the Indian Ocean region in mid-2016. Resultant coral bleaching caused an average 75% reduction in coral cover (present mean 6.2%). Most critically we report major declines in shallow fore-reef carbonate budgets, these shifting from strongly net positive (mean 5.92 G, where G = kg CaCO 3 m -2 yr -1 ) to strongly net negative (mean -2.96 G). These changes have driven major reductions in reef growth potential, which have declined from an average 4.2 to -0.4 mm yr -1 . Thus these shallow fore-reef habitats are now in a phase of net erosion. Based on past bleaching recovery trajectories, and predicted increases in bleaching frequency, we predict a prolonged period of suppressed budget and reef growth states. This will limit reef capacity to track IPCC projections of sea-level rise, thus limiting the natural breakwater capacity of these reefs and threatening reef island stability.

Bleaching drives collapse in reef carbonate budgets and reef growth potential on southern Maldives reefs

PubMed Central

Perry, C. T.; Morgan, K. M.

2017-01-01

Sea-surface temperature (SST) warming events, which are projected to increase in frequency and intensity with climate change, represent major threats to coral reefs. How these events impact reef carbonate budgets, and thus the capacity of reefs to sustain vertical growth under rising sea levels, remains poorly quantified. Here we quantify the magnitude of changes that followed the ENSO-induced SST warming that affected the Indian Ocean region in mid-2016. Resultant coral bleaching caused an average 75% reduction in coral cover (present mean 6.2%). Most critically we report major declines in shallow fore-reef carbonate budgets, these shifting from strongly net positive (mean 5.92 G, where G = kg CaCO3 m−2 yr−1) to strongly net negative (mean −2.96 G). These changes have driven major reductions in reef growth potential, which have declined from an average 4.2 to −0.4 mm yr−1. Thus these shallow fore-reef habitats are now in a phase of net erosion. Based on past bleaching recovery trajectories, and predicted increases in bleaching frequency, we predict a prolonged period of suppressed budget and reef growth states. This will limit reef capacity to track IPCC projections of sea-level rise, thus limiting the natural breakwater capacity of these reefs and threatening reef island stability. PMID:28084450

Artificial reefs and marine protected areas: a study in willingness to pay to access Folkestone Marine Reserve, Barbados, West Indies

PubMed Central

Wheeler, Philip M.; Johnson, Magnus L.

2016-01-01

Artificial reefs in marine protected areas provide additional habitat for biodiversity viewing, and therefore may offer an innovative management solution for managing for coral reef recovery and resilience. Marine park user fees can generate revenue to help manage and maintain natural and artificial reefs. Using a stated preference survey, this study investigates the present consumer surplus associated with visitor use of a marine protected area in Barbados. Two hypothetical markets were presented to differentiate between respondents use values of either: (a) natural reefs within the marine reserve or (b) artificial reef habitat for recreational enhancement. Information was also collected on visitors’ perceptions of artificial reefs, reef material preferences and reef conservation awareness. From a sample of 250 visitors on snorkel trips, we estimate a mean willingness to pay of US$18.33 (median—US$15) for natural reef use and a mean value of US$17.58 (median—US$12.50) for artificial reef use. The number of marine species viewed, age of respondent, familiarity with the Folkestone Marine Reserve and level of environmental concern were statistically significant in influencing willingness to pay. Regression analyses indicate visitors are willing to pay a significant amount to view marine life, especially turtles. Our results suggest that user fees could provide a considerable source of income to aid reef conservation in Barbados. In addition, the substantial use value reported for artificial reefs indicates a reef substitution policy may be supported by visitors to the Folkestone Marine Reserve. We discuss our findings and highlight directions for future research that include the need to collect data to establish visitors’ non-use values to fund reef management. PMID:27547521

Using coral disease prevalence to assess the effects of concentrating tourism activities on offshore reefs in a tropical marine park.

PubMed

Lamb, Joleah B; Willis, Bette L

2011-10-01

Concentrating tourism activities can be an effective way to closely manage high-use parks and minimize the extent of the effects of visitors on plants and animals, although considerable investment in permanent tourism facilities may be required. On coral reefs, a variety of human-related disturbances have been associated with elevated levels of coral disease, but the effects of reef-based tourist facilities (e.g., permanent offshore visitor platforms) on coral health have not been assessed. In partnership with reef managers and the tourism industry, we tested the effectiveness of concentrating tourism activities as a strategy for managing tourism on coral reefs. We compared prevalence of brown band disease, white syndromes, black band disease, skeletal eroding band, and growth anomalies among reefs with and without permanent tourism platforms within the Great Barrier Reef Marine Park. Coral diseases were 15 times more prevalent at reefs with offshore tourism platforms than at nearby reefs without platforms. The maximum prevalence and maximum number of cases of each disease type were recorded at reefs with permanently moored tourism platforms. Diseases affected 10 coral genera from 7 families at reefs with platforms and 4 coral genera from 3 families at reefs without platforms. The greatest number of disease cases occurred within the spatially dominant acroporid corals, which exhibited 18-fold greater disease prevalence at reefs with platforms than at reefs without platforms. Neither the percent cover of acroporids nor overall coral cover differed significantly between reefs with and without platforms, which suggests that neither factor was responsible for the elevated levels of disease. Identifying how tourism activities and platforms facilitate coral disease in marine parks will help ensure ongoing conservation of coral assemblages and tourism. ©2011 Society for Conservation Biology.

Novel tradable instruments in the conservation of coral reefs, based on the coral gardening concept for reef restoration.

PubMed

Rinkevich, Baruch

2015-10-01

Nearly all coral reefs bordering nations have experienced net losses in reef biodiversity, goods and services, even without considering the ever-developing global change impacts. In response, this overview wishes to reveal through prospects of active reef-restoration, the currently non-marketed or poorly marketed reef services, focusing on a single coral species (Stylophora pistillata). It is implied that the integration of equity capitals and other commodification with reef-restoration practices will improve total reef services. Two tiers of market-related activities are defined, the traditional first-tier instruments (valuating costs/gains for extracting tradable goods and services) and novel second-tier instruments (new/expanded monetary tools developed as by-products of reef restoration measures). The emerging new suite of economic mechanisms based on restoration methodologies could be served as an incentive for ecosystem conservation, enhancing the sum values of all services generated by coral reefs, where the same stocks of farmed/transplanted coral colonies will be used as market instruments. I found that active restoration measures disclose 12 classes of second-tier goods and services, which may partly/wholly finance restoration acts, bringing to light reef capitalizations that allow the expansion of markets with products that have not been considered before. The degree to which the second tier of market-related services could buffer coral-reef degradation is still unclear and would vary with different reef types and in various reef restoration scenarios; however, reducing the uncertainty associated with restoration. It is expected that the expansion of markets with the new products and the enhancement of those already existing will be materialized even if reef ecosystems will recover into different statuses. Copyright © 2015 Elsevier Ltd. All rights reserved.

Benthic foraminifera baseline assemblages from a coastal nearshore reef complex on the central Great Barrier Reef

NASA Astrophysics Data System (ADS)

Johnson, Jamie; Perry, Chris; Smithers, Scott; Morgan, Kyle

2016-04-01

Declining water quality due to river catchment modification since European settlement (c. 1850 A.D.) represents a major threat to the health of coral reefs on Australia's Great Barrier Reef (GBR), particularly for those located in the coastal waters of the GBR's inner-shelf. These nearshore reefs are widely perceived to be most susceptible to declining water quality owing to their close proximity to river point sources. Despite this, nearshore reefs have been relatively poorly studied with the impacts and magnitudes of environmental degradation still remaining unclear. This is largely due to ongoing debates concerning the significance of increased sediment yields against naturally high background sedimentary regimes. Benthic foraminifera are increasingly used as tools for monitoring environmental and ecological change on coral reefs. On the GBR, the majority of studies have focussed on the spatial distributions of contemporary benthic foraminiferal assemblages. While baseline assemblages from other environments (e.g. inshore reefs and mangroves) have been described, very few records exist for nearshore reefs. Here, we present preliminary results from the first palaeoecological study of foraminiferal assemblages of nearshore reefs on the central GBR. Cores were recovered from the nearshore reef complex at Paluma Shoals using percussion techniques. Recovery was 100%, capturing the entire Holocene reef sequence of the selected reef structures. Radiocarbon dating and subsequent age-depth modelling techniques were used to identify reef sequences pre-dating European settlement. Benthic foraminifera assemblages were reconstructed from the identified sequences to establish pre-European ecological baselines with the aim of providing a record of foraminiferal distribution during vertical reef accretion and against which contemporary ecological change may be assessed.

Identifying zooplankton community changes between shallow and upper-mesophotic reefs on the Mesoamerican Barrier Reef, Caribbean.

PubMed

Andradi-Brown, Dominic A; Head, Catherine E I; Exton, Dan A; Hunt, Christina L; Hendrix, Alicia; Gress, Erika; Rogers, Alex D

2017-01-01

Mesophotic coral ecosystems (MCEs, reefs 30-150 m) are understudied, yet the limited research conducted has been biased towards large sessile taxa, such as scleractinian corals and sponges, or mobile taxa such as fishes. Here we investigate zooplankton communities on shallow reefs and MCEs around Utila on the southern Mesoamerican Barrier Reef using planktonic light traps. Zooplankton samples were sorted into broad taxonomic groups. Our results indicate similar taxonomic zooplankton richness and overall biomass between shallow reefs and MCEs. However, the abundance of larger bodied (>2 mm) zooplanktonic groups, including decapod crab zoea, mysid shrimps and peracarid crustaceans, was higher on MCEs than shallow reefs. Our findings highlight the importance of considering zooplankton when identifying broader reef community shifts across the shallow reef to MCE depth gradient.

75 FR 48934 - Coral Reef Conservation Program Implementation Guidelines

Federal Register 2010, 2011, 2012, 2013, 2014

2010-08-12

...-01] RIN 0648-ZC19 Coral Reef Conservation Program Implementation Guidelines AGENCY: National Oceanic... Guidelines (Guidelines) for the Coral Reef Conservation Program (CRCP or Program) under the Coral Reef... assistance for coral reef conservation projects under the Act. NOAA revised the Implementation Guidelines for...

Impact of sea-level rise and coral mortality on the wave dynamics and wave forces on barrier reefs.

PubMed

Baldock, T E; Golshani, A; Callaghan, D P; Saunders, M I; Mumby, P J

2014-06-15

A one-dimensional wave model was used to investigate the reef top wave dynamics across a large suite of idealized reef-lagoon profiles, representing barrier coral reef systems under different sea-level rise (SLR) scenarios. The modeling shows that the impacts of SLR vary spatially and are strongly influenced by the bathymetry of the reef and coral type. A complex response occurs for the wave orbital velocity and forces on corals, such that the changes in the wave dynamics vary reef by reef. Different wave loading regimes on massive and branching corals also leads to contrasting impacts from SLR. For many reef bathymetries, wave orbital velocities increase with SLR and cyclonic wave forces are reduced for certain coral species. These changes may be beneficial to coral health and colony resilience and imply that predicting SLR impacts on coral reefs requires careful consideration of the reef bathymetry and the mix of coral species. Copyright © 2014 Elsevier Ltd. All rights reserved.

Abundance and diversity of anemonefishes and their host sea anemones at two mesophotic sites on the Great Barrier Reef, Australia

NASA Astrophysics Data System (ADS)

Bridge, T.; Scott, A.; Steinberg, D.

2012-12-01

Anemonefishes and their host sea anemones are iconic inhabitants of coral reef ecosystems. While studies have documented their abundance in shallow-water reef habitats in parts of the Indo-Pacific, none have examined these species on mesophotic reefs. In this study, we used autonomous underwater vehicle imagery to examine the abundance and diversity of anemones and anemonefishes at Viper Reef and Hydrographers Passage in the central Great Barrier Reef at depths between 50 and 65 m. A total of 37 host sea anemones (31 Entacmaea quadricolor and 6 Heteractis crispa) and 24 anemonefishes (23 Amphiprion akindynos and 1 A. perideraion) were observed. Densities were highest at Viper Reef, with 8.48 E. quadricolor and A. akindynos per 100 m2 of reef substratum. These results support the hypothesis that mesophotic reefs have many species common to shallow-water coral reefs and that many taxa may occur at depths greater than currently recognised.

Automated benthic counting of living and non-living components in Ngedarrak Reef, Palau via subsurface underwater video.

PubMed

Marcos, Ma Shiela Angeli; David, Laura; Peñaflor, Eileen; Ticzon, Victor; Soriano, Maricor

2008-10-01

We introduce an automated benthic counting system in application for rapid reef assessment that utilizes computer vision on subsurface underwater reef video. Video acquisition was executed by lowering a submersible bullet-type camera from a motor boat while moving across the reef area. A GPS and echo sounder were linked to the video recorder to record bathymetry and location points. Analysis of living and non-living components was implemented through image color and texture feature extraction from the reef video frames and classification via Linear Discriminant Analysis. Compared to common rapid reef assessment protocols, our system can perform fine scale data acquisition and processing in one day. Reef video was acquired in Ngedarrak Reef, Koror, Republic of Palau. Overall success performance ranges from 60% to 77% for depths of 1 to 3 m. The development of an automated rapid reef classification system is most promising for reef studies that need fast and frequent data acquisition of percent cover of living and nonliving components.

Onondage pinnacle reefs in New York State

DOE Office of Scientific and Technical Information (OSTI.GOV)

Friedman, G.M.

1995-09-01

Onondaga pinnacle reefs, part of the Onondaga Formation, developed in an epeiric setting of the lowermost Middle Devonian (Eifelian). The reefs were initiated as coral-crinoidal mounds in the Edgecliff Member of the formation. Whereas most Devonian reefs are composed of rugose corals. Coral is the predominant kind of fossil, followed by crinoids, brachiopods, mollusks, undifferentiated skeletal debris, and possible sponges. The initial mineralogy of the corals is inferred to have been calcite. The porosity of these reefs is almost unique among reef reservoirs. most reefs produce from secondary or diagenetic porosity; by contrast Onondaga reefs display primary intracoralline or frameworkmore » porosity. Between framework builders and/or skeletal particles cryptocrystalline/microcrystalline cement fills pores. As observed in modern reefs this kind of cement resembles micrite, but probable formed as high-magnesian calcite in a high-energy setting. Syntaxial or rim cement common lines crinoid particles. Some of these pinnacle reefs, formerly gas producers, are presently under development as gas-storage reservoirs.« less

Testing the effect of habitat structure and complexity on nekton assemblages using experimental oyster reefs

USGS Publications Warehouse

Humphries, Austin T.; LaPeyre, Megan K.; Kimball, Matthew E.; Rozas, Lawrence P.

2011-01-01

Structurally complex habitats are often associated with more diverse and abundant species assemblages in both aquatic and terrestrial ecosystems. Biogenic reefs formed by the eastern oyster (Crassostrea virginica) are complex in nature and are recognized for their potential habitat value in estuarine systems along the US Atlantic and Gulf of Mexico coasts. Few studies, however, have examined the response of nekton to structural complexity within oyster reefs. We used a quantitative sampling technique to examine how the presence and complexity of experimental oyster reefs influence the abundance, biomass, and distribution of nekton by sampling reefs 4 months and 16 months post-construction. Experimental oyster reefs were colonized immediately by resident fishes and decapod crustaceans, and reefs supported a distinct nekton assemblage compared to mud-bottom habitat. Neither increased reef complexity, nor age of the experimental reef resulted in further changes in nekton assemblages or increases in nekton abundance or diversity. The presence of oyster reefs per se was the most important factor determining nekton usage.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Saller, A.H.; Schlanger, S.O.

Two wells drilled along the margin of Enewetak Atoll penetrated approximately 1,000 m of upper eocene, Oligocene, and lower Miocene carbonates. STrontium isotope stratigraphy indicates relatively continuous deposition of carbonate from 40 Ma to 20 Ma. Depositional environments show a gradual basinward progradation of facies with slope carbonates passing upward into fore-reef, reef, back-reef, and lagoonal carbonates. Slope strata contain wackestones and packstones with submarine-cemented lithoclasts, coral, coralline algae fragments, benthic rotaline forams, planktonic forams, and echinoderm fragments. Fore-reef strata are dominantly packstones and boundstones containing large pieces of coral, abundant benthic forams, coralline algae fragments, stromatoporoids(.), and minor planktonicmore » forams. Reef and near-reef sediments include coralgal boundstones and grainstones with abundant benthic forams. Halimeda and miliolid forams are common in lagoonward parts of the back reef. Sponge borings, geopetal structures, and fractures are common in reef and fore-reef strata. Lagoonal strata are wackestones and packstones with common mollusks, coral, coralline algae, and benthic forams (rotaline and miliolid). Diagenesis has extensively altered strata near the atoll margin. Aragonite dissolution and calcite cements (radiaxial and cloudy prismatic are abundant in fore-reef, reef, and some back-reef strata). Petrographic and geochemical data indicate arogonite dissolution and calcite cementation in seawater at burial depths of 100 to 300 m. Dolomite occurs in slope and deeply buried reefal carbonates.« less

Evaluating the attractiveness and effectiveness of artificial coral reefs as a recreational ecosystem service.

PubMed

Belhassen, Yaniv; Rousseau, Meghan; Tynyakov, Jenny; Shashar, Nadav

2017-12-01

Artificial reefs are increasingly being used around the globe to attract recreational divers, for both environmental and commercial reasons. This paper examines artificial coral reefs as recreational ecosystem services (RES) by evaluating their attractiveness and effectiveness and by examining divers' attitudes toward them. An online survey targeted at divers in Israel (n = 263) indicated that 35% of the dives in Eilat (a resort city on the shore of the Red Sea) take place at artificial reefs. A second study monitored divers' behavior around the Tamar artificial reef, one of the most popular submerged artificial reefs in Eilat, and juxtaposed it with divers' activities around two adjacent natural reefs. Findings show that the average diver density at the artificial reef was higher than at the two nearby natural knolls and that the artificial reef effectively diverts divers from natural knolls. A third study that examined the attitudes towards natural vs. artificial reefs found that the artificial reefs are considered more appropriate for training, but that divers feel less relaxed around them. By utilizing the RES approach as a framework, the study offers a comprehensive methodology that brings together the aesthetic, behavioral, and attitudinal aspects in terms of which artificial reefs can be evaluated. Copyright © 2017 Elsevier Ltd. All rights reserved.

Workshop on Biological Integrity of Coral Reefs August 21-22 ...

EPA Pesticide Factsheets

This report summarizes an EPA-sponsored workshop on coral reef biological integrity held at the Caribbean Coral Reef Institute in La Parguera, Puerto Rico on August 21-22, 2012. The goals of this workshop were to:• Identify key qualitative and quantitative ecological characteristics (reef attributes) that determine the condition of linear coral reefs inhabiting shallow waters (<12 m) in southwestern Puerto Rico.• Use those reef attributes to recommend categorical condition rankings for establishing a biological condition gradient.• Ascertain through expert consensus those reef attributes that characterize biological integrity (a natural, fully-functioning system of organisms and communities) for coral reefs. • Develop a conceptual, narrative model that describes how biological attributes of coral reefs change along a gradient of increasing anthropogenic stress.The workshop brought together scientists with expertise in coral reef taxonomic groups (e.g., stony corals, fishes, sponges, gorgonians, algae, seagrasses and macroinvertebrates), as well as community structure, organism condition, ecosystem function and ecosystem connectivity. The experts evaluated photos and videos from 12 stations collected during EPA Coral Reef surveys (2010 & 2011) from Puerto Rico on coral reefs exhibiting a wide range of conditions. The experts individually rated each station as to observed condition (“good”, “fair” or “poor”) and documented their rationale for

Catastrophic impact of typhoon waves on coral communities in the Ryukyu Islands under global warming

NASA Astrophysics Data System (ADS)

Hongo, Chuki; Kawamata, Hideki; Goto, Kazuhisa

2012-06-01

Typhoon-generated storm waves generally cause mechanical damage to coral communities on present-day reefs, and the magnitude and extent of damage is predicted to increase in the near future as a result of global warming. Therefore, a comprehensive understanding of potential future scenarios of reef ecosystems is of prime interest. This study assesses the current status of coral communities on Ibaruma reef, Ryukyu Islands, on the basis of field observations, engineering and fluid dynamic models, and calculations of wave motion, and predicts the potential effects of a super-extreme typhoon (incident wave height,H = 20 m; wave period, T = 20 s) on the reef. On the present-day reef, massive corals occur in shallow lagoons and tabular corals occur from the reef crest to the reef slope. The observed distribution of corals, which is frequently attacked by moderate (H = 10 m, T = 10 s) and extreme (H = 10 m, T = 15 s) typhoons, is consistent with the predictions of engineering models. Moreover, this study indicates that if a super-extreme typhoon attacks the reef in the near future, massive corals will survive in the shallow lagoons but tabular corals on the reef crest and reef slope will be severely impacted. The findings imply that super-extreme typhoons will cause a loss of species diversity, as the tabular corals are important reef builders and are critical to the maintenance of reef ecosystems. Consequently, reef restoration is a key approach to maintaining reef ecosystems in the wake of super-extreme typhoons.

Sponge distribution across Davies Reef, Great Barrier Reef, relative to location, depth, and water movement

NASA Astrophysics Data System (ADS)

Wilkinson, Clive R.; Evans, Elizabeth

1989-06-01

Sponge populations were surveyed at different depths in three zones of Davies Reef, a large platform reef of the central Great Barrier Reef. Depth is the major discriminatory factor as few sponges are found within the first 10 m depth and maximal populations occur between 15 m and 30 m on fore-reef, lagoon and back-reef slopes. Reef location is another major factor, with the lagoon containing a significantly different sponge population to either the fore-reef or the back-reef slopes. Physical factors are considered to be the major influences behind these patterns. Physical turbulence is strongest within the first 10 m and apparently limits sponge growth within these shallow zones. Insufficient photosynthetic radiation limits the growth of the sponge population below 30 m depth as many of the species are phototrophic with a dependence on cyanobacterial symbionts for nutrition. Sponge populations on the outer (fore- and back-) reef slopes are comparable with each other but different from those on lagoon slopes where currents are reduced and fine sediment loads are higher. The largest populations occur on the back-reef slope where currents are stronger and there are possibly higher concentrations of organic nutrients originating from the more productive shallow parts of the reef. While there are correlations between sponge populations and environmental parameters, data are insufficient to enable more definitive conclusions to be drawn. Most sponge species are distributed widely over the reef, however, some are restricted to a few habitats and, hence, may be used to characterize those habitats.

Residency and Spatial Use by Reef Sharks of an Isolated Seamount and Its Implications for Conservation

PubMed Central

Barnett, Adam; Abrantes, Kátya G.; Seymour, Jamie; Fitzpatrick, Richard

2012-01-01

Although marine protected areas (MPAs) are a common conservation strategy, these areas are often designed with little prior knowledge of the spatial behaviour of the species they are designed to protect. Currently, the Coral Sea area and its seamounts (north-east Australia) are under review to determine if MPAs are warranted. The protection of sharks at these seamounts should be an integral component of conservation plans. Therefore, knowledge on the spatial ecology of sharks at the Coral Sea seamounts is essential for the appropriate implementation of management and conservation plans. Acoustic telemetry was used to determine residency, site fidelity and spatial use of three shark species at Osprey Reef: whitetip reef sharks Triaenodon obesus, grey reef sharks Carcharhinus amblyrhynchos and silvertip sharks Carcharhinus albimarginatus. Most individuals showed year round residency at Osprey Reef, although five of the 49 individuals tagged moved to the neighbouring Shark Reef (∼14 km away) and one grey reef shark completed a round trip of ∼250 km to the Great Barrier Reef. Additionally, individuals of white tip and grey reef sharks showed strong site fidelity to the areas they were tagged, and there was low spatial overlap between groups of sharks tagged at different locations. Spatial use at Osprey Reef by adult sharks is generally restricted to the north-west corner. The high residency and limited spatial use of Osprey Reef suggests that reef sharks would be highly vulnerable to targeted fishing pressure and that MPAs incorporating no-take of sharks would be effective in protecting reef shark populations at Osprey and Shark Reef. PMID:22615782

Residency and spatial use by reef sharks of an isolated seamount and its implications for conservation.

PubMed

Barnett, Adam; Abrantes, Kátya G; Seymour, Jamie; Fitzpatrick, Richard

2012-01-01

Although marine protected areas (MPAs) are a common conservation strategy, these areas are often designed with little prior knowledge of the spatial behaviour of the species they are designed to protect. Currently, the Coral Sea area and its seamounts (north-east Australia) are under review to determine if MPAs are warranted. The protection of sharks at these seamounts should be an integral component of conservation plans. Therefore, knowledge on the spatial ecology of sharks at the Coral Sea seamounts is essential for the appropriate implementation of management and conservation plans. Acoustic telemetry was used to determine residency, site fidelity and spatial use of three shark species at Osprey Reef: whitetip reef sharks Triaenodon obesus, grey reef sharks Carcharhinus amblyrhynchos and silvertip sharks Carcharhinus albimarginatus. Most individuals showed year round residency at Osprey Reef, although five of the 49 individuals tagged moved to the neighbouring Shark Reef (~14 km away) and one grey reef shark completed a round trip of ~250 km to the Great Barrier Reef. Additionally, individuals of white tip and grey reef sharks showed strong site fidelity to the areas they were tagged, and there was low spatial overlap between groups of sharks tagged at different locations. Spatial use at Osprey Reef by adult sharks is generally restricted to the north-west corner. The high residency and limited spatial use of Osprey Reef suggests that reef sharks would be highly vulnerable to targeted fishing pressure and that MPAs incorporating no-take of sharks would be effective in protecting reef shark populations at Osprey and Shark Reef.

Two waves of colonization straddling the K-Pg boundary formed the modern reef fish fauna.

PubMed

Price, S A; Schmitz, L; Oufiero, C E; Eytan, R I; Dornburg, A; Smith, W L; Friedman, M; Near, T J; Wainwright, P C

2014-05-22

Living reef fishes are one of the most diverse vertebrate assemblages on Earth. Despite its prominence and ecological importance, the origins and assembly of the reef fish fauna is poorly described. A patchy fossil record suggests that the major colonization of reef habitats must have occurred in the Late Cretaceous and early Palaeogene, with the earliest known modern fossil coral reef fish assemblage dated to 50 Ma. Using a phylogenetic approach, we analysed the early evolutionary dynamics of modern reef fishes. We find that reef lineages successively colonized reef habitats throughout the Late Cretaceous and early Palaeogene. Two waves of invasion were accompanied by increasing morphological convergence: one in the Late Cretaceous from 90 to 72 Ma and the other immediately following the end-Cretaceous mass extinction. The surge in reef invasions after the Cretaceous-Palaeogene boundary continued for 10 Myr, after which the pace of transitions to reef habitats slowed. Combined, these patterns match a classic niche-filling scenario: early transitions to reefs were made rapidly by morphologically distinct lineages and were followed by a decrease in the rate of invasions and eventual saturation of morphospace. Major alterations in reef composition, distribution and abundance, along with shifts in climate and oceanic currents, occurred during the Late Cretaceous and early Palaeogene interval. A causal mechanism between these changes and concurrent episodes of reef invasion remains obscure, but what is clear is that the broad framework of the modern reef fish fauna was in place within 10 Myr of the end-Cretaceous extinction.

Two waves of colonization straddling the K–Pg boundary formed the modern reef fish fauna

PubMed Central

Price, S. A.; Schmitz, L.; Oufiero, C. E.; Eytan, R. I.; Dornburg, A.; Smith, W. L.; Friedman, M.; Near, T. J.; Wainwright, P. C.

2014-01-01

Living reef fishes are one of the most diverse vertebrate assemblages on Earth. Despite its prominence and ecological importance, the origins and assembly of the reef fish fauna is poorly described. A patchy fossil record suggests that the major colonization of reef habitats must have occurred in the Late Cretaceous and early Palaeogene, with the earliest known modern fossil coral reef fish assemblage dated to 50 Ma. Using a phylogenetic approach, we analysed the early evolutionary dynamics of modern reef fishes. We find that reef lineages successively colonized reef habitats throughout the Late Cretaceous and early Palaeogene. Two waves of invasion were accompanied by increasing morphological convergence: one in the Late Cretaceous from 90 to 72 Ma and the other immediately following the end-Cretaceous mass extinction. The surge in reef invasions after the Cretaceous–Palaeogene boundary continued for 10 Myr, after which the pace of transitions to reef habitats slowed. Combined, these patterns match a classic niche-filling scenario: early transitions to reefs were made rapidly by morphologically distinct lineages and were followed by a decrease in the rate of invasions and eventual saturation of morphospace. Major alterations in reef composition, distribution and abundance, along with shifts in climate and oceanic currents, occurred during the Late Cretaceous and early Palaeogene interval. A causal mechanism between these changes and concurrent episodes of reef invasion remains obscure, but what is clear is that the broad framework of the modern reef fish fauna was in place within 10 Myr of the end-Cretaceous extinction. PMID:24695431

A geological perspective on the degradation and conservation of western Atlantic coral reefs

USGS Publications Warehouse

Kuffner, Ilsa B.; Toth, Lauren T.

2016-01-01

Continuing coral-reef degradation in the western Atlantic is resulting in loss of ecological and geologic functions of reefs. With the goal of assisting resource managers and stewards of reefs in setting and measuring progress toward realistic goals for coral-reef conservation and restoration, we examined reef degradation in this region from a geological perspective. The importance of ecosystem services provided by coral reefs—as breakwaters that dissipate wave energy and protect shorelines and as providers of habitat for innumerable species—cannot be overstated. However, the few coral species responsible for reef building in the western Atlantic during the last approximately 1.5 million years are not thriving in the 21st century. These species are highly sensitive to abrupt temperature extremes, prone to disease infection, and have low sexual reproductive potential. Their vulnerability and the low functional redundancy of branching corals have led to the low resilience of western Atlantic reef ecosystems. The decrease in live coral cover over the last 50 years highlights the need for study of relict (senescent) reefs, which, from the perspective of coastline protection and habitat structure, may be just as important to conserve as the living coral veneer. Research is needed to characterize the geological processes of bioerosion, reef cementation, and sediment transport as they relate to modern-day changes in reef elevation. For example, although parrotfish remove nuisance macroalgae, possibly promoting coral recruitment, they will not save Atlantic reefs from geological degradation. In fact, these fish are quickly nibbling away significant quantities of Holocene reef framework. The question of how different biota covering dead reefs affect framework resistance to biological and physical erosion needs to be addressed. Monitoring and managing reefs with respect to physical resilience, in addition to ecological resilience, could optimize the expenditure of resources in conserving Atlantic reefs and the services they provide.

Coral Reef Community Composition in the Context of Disturbance History on the Great Barrier Reef, Australia

PubMed Central

Graham, Nicholas A. J.; Chong-Seng, Karen M.; Huchery, Cindy; Januchowski-Hartley, Fraser A.; Nash, Kirsty L.

2014-01-01

Much research on coral reefs has documented differential declines in coral and associated organisms. In order to contextualise this general degradation, research on community composition is necessary in the context of varied disturbance histories and the biological processes and physical features thought to retard or promote recovery. We conducted a spatial assessment of coral reef communities across five reefs of the central Great Barrier Reef, Australia, with known disturbance histories, and assessed patterns of coral cover and community composition related to a range of other variables thought to be important for reef dynamics. Two of the reefs had not been extensively disturbed for at least 15 years prior to the surveys. Three of the reefs had been severely impacted by crown-of-thorns starfish outbreaks and coral bleaching approximately a decade before the surveys, from which only one of them was showing signs of recovery based on independent surveys. We incorporated wave exposure (sheltered and exposed) and reef zone (slope, crest and flat) into our design, providing a comprehensive assessment of the spatial patterns in community composition on these reefs. Categorising corals into life history groupings, we document major coral community differences in the unrecovered reefs, compared to the composition and covers found on the undisturbed reefs. The recovered reef, despite having similar coral cover, had a different community composition from the undisturbed reefs, which may indicate slow successional processes, or a different natural community dominance pattern due to hydrology and other oceanographic factors. The variables that best correlated with patterns in the coral community among sites included the density of juvenile corals, herbivore fish biomass, fish species richness and the cover of macroalgae. Given increasing impacts to the Great Barrier Reef, efforts to mitigate local stressors will be imperative to encouraging coral communities to persist into the future. PMID:24983747

Re-creating missing population baselines for Pacific reef sharks.

PubMed

Nadon, Marc O; Baum, Julia K; Williams, Ivor D; McPherson, Jana M; Zgliczynski, Brian J; Richards, Benjamin L; Schroeder, Robert E; Brainard, Russell E

2012-06-01

Sharks and other large predators are scarce on most coral reefs, but studies of their historical ecology provide qualitative evidence that predators were once numerous in these ecosystems. Quantifying density of sharks in the absence of humans (baseline) is, however, hindered by a paucity of pertinent time-series data. Recently researchers have used underwater visual surveys, primarily of limited spatial extent or nonstandard design, to infer negative associations between reef shark abundance and human populations. We analyzed data from 1607 towed-diver surveys (>1 ha transects surveyed by observers towed behind a boat) conducted at 46 reefs in the central-western Pacific Ocean, reefs that included some of the world's most pristine coral reefs. Estimates of shark density from towed-diver surveys were substantially lower (<10%) than published estimates from surveys along small transects (<0.02 ha), which is not consistent with inverted biomass pyramids (predator biomass greater than prey biomass) reported by other researchers for pristine reefs. We examined the relation between the density of reef sharks observed in towed-diver surveys and human population in models that accounted for the influence of oceanic primary productivity, sea surface temperature, reef area, and reef physical complexity. We used these models to estimate the density of sharks in the absence of humans. Densities of gray reef sharks (Carcharhinus amblyrhynchos), whitetip reef sharks (Triaenodon obesus), and the group "all reef sharks" increased substantially as human population decreased and as primary productivity and minimum sea surface temperature (or reef area, which was highly correlated with temperature) increased. Simulated baseline densities of reef sharks under the absence of humans were 1.1-2.4/ha for the main Hawaiian Islands, 1.2-2.4/ha for inhabited islands of American Samoa, and 0.9-2.1/ha for inhabited islands in the Mariana Archipelago, which suggests that density of reef sharks has declined to 3-10% of baseline levels in these areas. ©2012 Society for Conservation Biology No claim to original US government works.

Modelling Coral Reef Futures to Inform Management: Can Reducing Local-Scale Stressors Conserve Reefs under Climate Change?

PubMed Central

Gurney, Georgina G.; Melbourne-Thomas, Jessica; Geronimo, Rollan C.; Aliño, Perry M.; Johnson, Craig R.

2013-01-01

Climate change has emerged as a principal threat to coral reefs, and is expected to exacerbate coral reef degradation caused by more localised stressors. Management of local stressors is widely advocated to bolster coral reef resilience, but the extent to which management of local stressors might affect future trajectories of reef state remains unclear. This is in part because of limited understanding of the cumulative impact of multiple stressors. Models are ideal tools to aid understanding of future reef state under alternative management and climatic scenarios, but to date few have been sufficiently developed to be useful as decision support tools for local management of coral reefs subject to multiple stressors. We used a simulation model of coral reefs to investigate the extent to which the management of local stressors (namely poor water quality and fishing) might influence future reef state under varying climatic scenarios relating to coral bleaching. We parameterised the model for Bolinao, the Philippines, and explored how simulation modelling can be used to provide decision support for local management. We found that management of water quality, and to a lesser extent fishing, can have a significant impact on future reef state, including coral recovery following bleaching-induced mortality. The stressors we examined interacted antagonistically to affect reef state, highlighting the importance of considering the combined impact of multiple stressors rather than considering them individually. Further, by providing explicit guidance for management of Bolinao's reef system, such as which course of management action will most likely to be effective over what time scales and at which sites, we demonstrated the utility of simulation models for supporting management. Aside from providing explicit guidance for management of Bolinao's reef system, our study offers insights which could inform reef management more broadly, as well as general understanding of reef systems. PMID:24260347

Modelling coral reef futures to inform management: can reducing local-scale stressors conserve reefs under climate change?

PubMed

Gurney, Georgina G; Melbourne-Thomas, Jessica; Geronimo, Rollan C; Aliño, Perry M; Johnson, Craig R

2013-01-01

Climate change has emerged as a principal threat to coral reefs, and is expected to exacerbate coral reef degradation caused by more localised stressors. Management of local stressors is widely advocated to bolster coral reef resilience, but the extent to which management of local stressors might affect future trajectories of reef state remains unclear. This is in part because of limited understanding of the cumulative impact of multiple stressors. Models are ideal tools to aid understanding of future reef state under alternative management and climatic scenarios, but to date few have been sufficiently developed to be useful as decision support tools for local management of coral reefs subject to multiple stressors. We used a simulation model of coral reefs to investigate the extent to which the management of local stressors (namely poor water quality and fishing) might influence future reef state under varying climatic scenarios relating to coral bleaching. We parameterised the model for Bolinao, the Philippines, and explored how simulation modelling can be used to provide decision support for local management. We found that management of water quality, and to a lesser extent fishing, can have a significant impact on future reef state, including coral recovery following bleaching-induced mortality. The stressors we examined interacted antagonistically to affect reef state, highlighting the importance of considering the combined impact of multiple stressors rather than considering them individually. Further, by providing explicit guidance for management of Bolinao's reef system, such as which course of management action will most likely to be effective over what time scales and at which sites, we demonstrated the utility of simulation models for supporting management. Aside from providing explicit guidance for management of Bolinao's reef system, our study offers insights which could inform reef management more broadly, as well as general understanding of reef systems.

First Pleistocene faunas from the Arabian Peninsula: An Nafud desert, Saudi Arabia

NASA Astrophysics Data System (ADS)

Thomas, Herbert; Geraads, Denis; Vaslet, Denis; Memesh, Abdallah; Billiou, Daniel; Bocherens, Hervé; Dobigny, Gauthier; Eisenmann, Véra; Gayet, Mireille; France de Lapparent de Broin; Petter, Germaine; Halawani, Mohammed

1998-01-01

Three Pleistocene vertebrate localities in lacustrine deposits which accumulated in interdune depressions were discovered in the south-western part of the An Nafud sand sea (northern Saudi Arabia). Although the fossil vertebrate fauna is restricted in diversity, its composition and stage of evolution suggest an Early Pleistocene age in contrast with the recent Pleistocene or Holocene lake beds occurring in several other interdune depressions in central and southern An Nafud. The Nafud fauna has clear African affinities whereas faunas from the Levant, dating from the Middle Pleistocene onwards, contain typically European elements.

ReefLink Database: A decision support tool for Linking Coral Reefs and Society Through Systems Thinking

EPA Science Inventory

Coral reefs provide the ecological foundation for productive and diverse fish and invertebrate communities that support multibillion dollar reef fishing and tourism industries. Yet reefs are threatened by growing coastal development, climate change, and over-exploitation. A key i...

The role of coral reef rugosity in dissipating wave energy and coastal protection

NASA Astrophysics Data System (ADS)

Harris, Daniel; Rovere, Alessio; Parravicini, Valeriano; Casella, Elisa

2016-04-01

Coral reefs are the most effective natural barrier in dissipating wave energy through breaking and bed friction. The attenuation of wave energy by coral reef flats is essential in the protection and stability of coral reef aligned coasts and reef islands. However, the effectiveness of wave energy dissipation by coral reefs may be diminished under future climate change scenarios with a potential reduction of coral reef rugosity due to increased stress environmental stress on corals. The physical roughness or rugosity of coral reefs is directly related to ecological diversity, reef health, and hydrodynamic roughness. However, the relationship between physical roughness and hydrodynamic roughness is not well understood despite the crucial role of bed friction in dissipating wave energy in coral reef aligned coasts. We examine the relationship between wave energy dissipation across a fringing reef in relation to the cross-reef ecological zonation and the benthic hydrodynamic roughness. Waves were measured by pressure transducers in a cross-reef transect on the reefs flats and post processed on a wave by wave basis to determine wave statistics such as significant wave height and wave period. Results from direct wave measurement were then used to calibrate a 1D wave dissipation model that incorporates dissipation functions due to bed friction and wave breaking. This model was used to assess the bed roughness required to produce the observed wave height dissipation during propagation from deep water and across the coral reef flats. Changes in wave dissipation was also examined under future scenarios of sea level rise and reduced bed roughness. Three dimensional models of the benthic reef structure were produced through structure-from-motion photogrammetry surveys. Reef rugosity was then determined from these surveys and related to the roughness results from the calibrated model. The results indicate that applying varying roughness coefficients as the benthic ecological assemblage changes produces the most accurate assessment of wave energy dissipation across the reef flat. However, the modelled results of bed roughness (e.g. 0.01 for the fore-reef slope) were different to the directly measured rugosity values (0.05 for the fore-reef slope) from three dimension structure-from-motion surveys. In spite of this, the modelled and directly measured values of roughness are similar considering the difficulties outlined in previous research when relating the coral reef structural complexity to a single value of hydrodynamic roughness. Bed roughness was shown to be a secondary factor behind wave breaking in dissipating wave energy. However, without bed friction waves could be an order of magnitude higher in the back-reef environment. Bed friction is also increasingly important in wave dissipation at higher sea levels as wave energy dissipation due to wave breaking is reduced at greater depths. This shows that maintaining a structurally diverse and healthy reef is crucial under future sea level rise scenarios in order to maintain the protection of coastal environments. These results also indicate that significant geomorphic change in coastal environments will occur due to reduced wave dissipation at higher sea levels unless reefs are capable of keeping up with forecasted sea level rise.

78 FR 66683 - Fisheries in the Western Pacific; Special Coral Reef Ecosystem Fishing Permit

Federal Register 2010, 2011, 2012, 2013, 2014

2013-11-06

... the Western Pacific; Special Coral Reef Ecosystem Fishing Permit AGENCY: National Marine Fisheries... special coral reef ecosystem fishing permit. SUMMARY: NMFS issued a Special Coral Reef Ecosystem Fishing Permit that authorizes Kampachi Farms, LLC, to culture and harvest a coral reef ecosystem management unit...

76 FR 63904 - Proposed Information Collection; Comment Request; Coral Reef Conservation Program Administration

Federal Register 2010, 2011, 2012, 2013, 2014

2011-10-14

... Collection; Comment Request; Coral Reef Conservation Program Administration AGENCY: National Oceanic and... The Coral Reef Conservation Act of 2000 (Act) was enacted to provide a framework for conserving coral reefs. The Coral Reef Conservation Grant Program, under the Act, provides funds to broad- based...

76 FR 38618 - Proposed Information Collection; Comment Request; Coral Reef Conservation Program Survey

Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-01

..., NOAA is seeking information on the knowledge, attitudes and reef use patterns, as well as information on knowledge and attitudes related to specific reef protection activities. In addition, this survey... the efforts to protect reefs rely on education and changing attitudes toward reef protection, the...

Arrecifes de Coral: Una Coleccion de Actividades en Espanol para Estudiantes de Escuela Intermedia (Coral Reefs: A Spanish Compilation of Activities for Middle School Students).

ERIC Educational Resources Information Center

Walker, Sharon H.; Newton, R. Amanda; Ortiz, Alida

This activity book for middle school students on coral reefs is divided into 10 sections. Section 1 is the introduction. Section 2 describes what coral reefs are while section 3 describes how coral reefs reproduce and grow. Section 4 describes where coral reefs are found, and section 5 describes life on a coral reef. Section 6 describes the…

Great Barrier Reef, Queensland, Australia

NASA Technical Reports Server (NTRS)

1991-01-01

The Great Barrier Reef of Queensland, Australia extends for roughly 2,000 km along the northeast coast of Australia and is made up of thousands of individual reefs which define the edge of the Continental shelf. Swan Reef, the southern part of the reef system, is seen in this view. Water depths around the reefs are quite shallow (less than 1 to 36 meters) but only a few kilometers offshore, water depths can reach 1,000 meters.

Coral reefs in the Anthropocene.

PubMed

Hughes, Terry P; Barnes, Michele L; Bellwood, David R; Cinner, Joshua E; Cumming, Graeme S; Jackson, Jeremy B C; Kleypas, Joanie; van de Leemput, Ingrid A; Lough, Janice M; Morrison, Tiffany H; Palumbi, Stephen R; van Nes, Egbert H; Scheffer, Marten

2017-05-31

Coral reefs support immense biodiversity and provide important ecosystem services to many millions of people. Yet reefs are degrading rapidly in response to numerous anthropogenic drivers. In the coming centuries, reefs will run the gauntlet of climate change, and rising temperatures will transform them into new configurations, unlike anything observed previously by humans. Returning reefs to past configurations is no longer an option. Instead, the global challenge is to steer reefs through the Anthropocene era in a way that maintains their biological functions. Successful navigation of this transition will require radical changes in the science, management and governance of coral reefs.

A deep reef in deep trouble

USGS Publications Warehouse

Menza, Charles; Kendall, M.; Rogers, C.; Miller, J.

2007-01-01

The well-documented degradation of shallower reefs which are often closer to land and more vulnerable to pollution, sewage and other human-related stressors has led to the suggestion that deeper, more remote offshore reefs could possibly serve as sources of coral and fish larvae to replenish the shallower reefs. Yet, the distribution, status, and ecological roles of deep (>30 m) Caribbean reefs are not well known. In this report, an observation of a deep reef which has undergone a recent extensive loss of coral cover is presented. In stark contrast to the typical pattern of coral loss in shallow reefs, the deeper corals were most affected. This report is the first description of such a pattern of coral loss on a deep reef.

The Ecological Role of Sharks on Coral Reefs.

PubMed

Roff, George; Doropoulos, Christopher; Rogers, Alice; Bozec, Yves-Marie; Krueck, Nils C; Aurellado, Eleanor; Priest, Mark; Birrell, Chico; Mumby, Peter J

2016-05-01

Sharks are considered the apex predator of coral reefs, but the consequences of their global depletion are uncertain. Here we explore the ecological roles of sharks on coral reefs and, conversely, the importance of reefs for sharks. We find that most reef-associated shark species do not act as apex predators but instead function as mesopredators along with a diverse group of reef fish. While sharks perform important direct and indirect ecological roles, the evidence to support hypothesised shark-driven trophic cascades that benefit corals is weak and equivocal. Coral reefs provide some functional benefits to sharks, but sharks do not appear to favour healthier reef environments. Restoring populations of sharks is important and can yet deliver ecological surprise. Copyright © 2016 Elsevier Ltd. All rights reserved.

Checklist of fishes from madagascar reef, campeche bank, méxico.

PubMed

Zarco Perello, Salvador; Moreno Mendoza, Rigoberto; Simões, Nuno

2014-01-01

This study presents the first list of fish species from Madagascar Reef, Campeche Bank, Gulf of México. Field surveys and literature review identified 54 species belonging to 8 orders, 30 families and 43 genera, comprising both conspicuous and cryptic fishes. Species richness was lower at this reef site compared to reefs in the Mexican Caribbean, Veracruz or Tuxpan, but was similar to other reefs in the same region. Species composition was a mixture of species present in all the reef systems of the Mexican Atlantic. Hypoplectrusecosur was recorded here for the first time in the Gulf of Mexico, Mycteropercamicrolepis, Equetuslanceolatus and Chaetodipterusfaber were new records for the reefs of the Campeche Bank, Elacatinusxanthiprora was recorded for the second time in Mexico and expanded its known distribution westwards from Alacranes Reef and Sanopusreticulatus, endemic of the Yucatan state, was recorded here for the first time on a reef.

Tight coupling between coral reef morphology and mapped resilience in the Red Sea.

PubMed

Rowlands, Gwilym; Purkis, Sam; Bruckner, Andrew

2016-04-30

Lack of knowledge on the conservation value of different reef types can stymie decision making, and result in less optimal management solutions. Addressing the information gap of coral reef resilience, we produce a map-based Remote Sensed Resilience Index (RSRI) from data describing the spatial distribution of stressors, and properties of reef habitats on the Farasan Banks, Saudi Arabia. We contrast the distribution of this index among fourteen reef types, categorized on a scale of maturity that includes juvenile (poorly aggraded), mature (partially aggraded), and senile (fully aggraded) reefs. Sites with high reef resilience can be found in most detached reef types; however they are most common in mature reefs. We aim to stimulate debate on the coupling that exists between geomorphology and conservation biology, and consider how such information can be used to inform management decisions. Copyright © 2015 Elsevier Ltd. All rights reserved.

The growth of coral reef science in the Gulf: a historical perspective.

PubMed

Burt, John A

2013-07-30

Coral reef science has grown exponentially in recent decades in the Gulf. Analysis of literature from 1950 to 2012 identified 270 publications on coral reefs in the Gulf, half of which were published in just the past decade. This paper summarizes the growth and evolution of coral reef science in the Gulf by examining when, where and how research has been conducted on Gulf reefs, who conducted that research, and what themes and taxa have dominated scientific interest. The results demonstrate that there has been significant growth in our understanding of the valuable coral reefs of the Gulf, but also highlight the fact that we are documenting an increasingly degraded ecosystem. Reef scientists must make a concerted effort to improve dialogue with regional reef management and decision-makers if we are to stem the tide of decline in coral reefs in the Gulf. Copyright © 2013 Elsevier Ltd. All rights reserved.

Checklist of Fishes from Madagascar Reef, Campeche Bank, México

PubMed Central

2014-01-01

Abstract This study presents the first list of fish species from Madagascar Reef, Campeche Bank, Gulf of México. Field surveys and literature review identified 54 species belonging to 8 orders, 30 families and 43 genera, comprising both conspicuous and cryptic fishes. Species richness was lower at this reef site compared to reefs in the Mexican Caribbean, Veracruz or Tuxpan, but was similar to other reefs in the same region. Species composition was a mixture of species present in all the reef systems of the Mexican Atlantic. Hypoplectrus ecosur was recorded here for the first time in the Gulf of Mexico, Mycteroperca microlepis, Equetus lanceolatus and Chaetodipterus faber were new records for the reefs of the Campeche Bank, Elacatinus xanthiprora was recorded for the second time in Mexico and expanded its known distribution westwards from Alacranes Reef and Sanopus reticulatus, endemic of the Yucatan state, was recorded here for the first time on a reef. PMID:24891834

Extinction rate, historical population structure and ecological role of the Caribbean monk seal.

PubMed

McClenachan, Loren; Cooper, Andrew B

2008-06-22

The productivity and biomass of pristine coral reef ecosystems is poorly understood, particularly in the Caribbean where communities have been impacted by overfishing and multiple other stressors over centuries. Using historical data on the spatial distribution and abundance of the extinct Caribbean monk seal (Monachus tropicalis), this study reconstructs the population size, structure and ecological role of this once common predator within coral reef communities, and provides evidence that historical reefs supported biomasses of fishes and invertebrates up to six times greater than those found on typical modern Caribbean reefs. An estimated 233,000-338,000 monk seals were distributed among 13 colonies across the Caribbean. The biomass of reef fishes and invertebrates required to support historical seal populations was 732-1018 gm(-2) of reefs, which exceeds that found on any Caribbean reef today and is comparable with those measured in remote Pacific reefs. Quantitative estimates of historically dense monk seal colonies and their consumption rates on pristine reefs provide concrete data on the magnitude of decline in animal biomass on Caribbean coral reefs. Realistic reconstruction of these past ecosystems is critical to understanding the profound and long-lasting effect of human hunting on the functioning of coral reef ecosystems.

Using airborne laser altimetry to estimate Sabellaria alveolata (Polychaeta: Sabellariidae) reefs volume in tidal flat environments

NASA Astrophysics Data System (ADS)

Noernberg, Mauricio Almeida; Fournier, Jérôme; Dubois, Stanislas; Populus, Jacques

2010-12-01

This study has exploited aerial photographs and LiDAR digital elevation model to quantify intertidal complex landforms volume. A first volume estimation of the main sabellariid polychaete reef complex of the Bay of Mont-Saint-Michel - France is presented. The Sabellaria alveolata is an engineering species that heavily modifies its environment. This gregarious tube-building annelid forms dense and solid reefs of bioclastic coarse sand which can reach several km 2. Since 1970 a very strong decline of reefs has been observed. The authorities have curbed fishing activities without any noticeable changes in reef health status. The S. alveolata reef volume is estimated to be 132 048 m 3 (96 301 m 3 for Sainte-Anne reef and 35 747 m 3 for Champeaux reef). Further LiDAR data surveys will be needed to be able to understand and quantify the accretion/erosion processes in play in the reef dynamic. Because of the internal variability of topographic complexity of the reef, characterized by crevices, cracks, and holes rather than whole blocks, further studies are needed to calculate more accurately the volume of the reef.

The Coral Reef pH-stat: An Important Defense Against Ocean Acidification? (Invited)

NASA Astrophysics Data System (ADS)

Andersson, A. J.; Yeakel, K.; Bates, N.; de Putron, S.; Collins, A.

2013-12-01

Concerns have been raised on how coral reefs will be affected by ocean acidification (OA), but there are currently no direct predictions on how seawater CO2 chemistry and pH within coral reefs might change in response to OA. Projections of future changes in seawater pH and aragonite saturation state have only been applied to open ocean conditions surrounding coral reef environments rather than the reef systems themselves. The seawater CO2 chemistry within heterogenous coral reef systems can be significantly different from that of the open ocean depending on the residence time, community composition and the major biogeochemical processes occurring on the reef, i.e., net ecosystem organic carbon production and calcification, which combined act to modify the seawater chemistry. We argue that these processes and coral reefs in general could as a pH-stat, partly regulating seawater pH on the reef and offsetting changes in seawater chemistry imposed by ocean acidification. Based on observations from the Bermuda coral reef, we show that a range of anticipated biogeochemical responses of coral reef communities to OA by the end of this century could partially offset changes in seawater pH by an average of 12% to 24%.

Linking social and ecological systems to sustain coral reef fisheries.

PubMed

Cinner, Joshua E; McClanahan, Timothy R; Daw, Tim M; Graham, Nicholas A J; Maina, Joseph; Wilson, Shaun K; Hughes, Terence P

2009-02-10

The ecosystem goods and services provided by coral reefs are critical to the social and economic welfare of hundreds of millions of people, overwhelmingly in developing countries [1]. Widespread reef degradation is severely eroding these goods and services, but the socioeconomic factors shaping the ways that societies use coral reefs are poorly understood [2]. We examine relationships between human population density, a multidimensional index of socioeconomic development, reef complexity, and the condition of coral reef fish populations in five countries across the Indian Ocean. In fished sites, fish biomass was negatively related to human population density, but it was best explained by reef complexity and a U-shaped relationship with socioeconomic development. The biomass of reef fishes was four times lower at locations with intermediate levels of economic development than at locations with both low and high development. In contrast, average biomass inside fishery closures was three times higher than in fished sites and was not associated with socioeconomic development. Sustaining coral reef fisheries requires an integrated approach that uses tools such as protected areas to quickly build reef resources while also building capacities and capital in societies over longer time frames to address the complex underlying causes of reef degradation.

Ecological solutions to reef degradation: optimizing coral reef restoration in the Caribbean and Western Atlantic

PubMed Central

2016-01-01

Reef restoration activities have proliferated in response to the need to mitigate coral declines and recover lost reef structure, function, and ecosystem services. Here, we describe the recent shift from costly and complex engineering solutions to recover degraded reef structure to more economical and efficient ecological approaches that focus on recovering the living components of reef communities. We review the adoption and expansion of the coral gardening framework in the Caribbean and Western Atlantic where practitioners now grow and outplant 10,000’s of corals onto degraded reefs each year. We detail the steps for establishing a gardening program as well as long-term goals and direct and indirect benefits of this approach in our region. With a strong scientific basis, coral gardening activities now contribute significantly to reef and species recovery, provide important scientific, education, and outreach opportunities, and offer alternate livelihoods to local stakeholders. While challenges still remain, the transition from engineering to ecological solutions for reef degradation has opened the field of coral reef restoration to a wider audience poised to contribute to reef conservation and recovery in regions where coral losses and recruitment bottlenecks hinder natural recovery. PMID:27781176

Ecological solutions to reef degradation: optimizing coral reef restoration in the Caribbean and Western Atlantic.

PubMed

Lirman, Diego; Schopmeyer, Stephanie

2016-01-01

Reef restoration activities have proliferated in response to the need to mitigate coral declines and recover lost reef structure, function, and ecosystem services. Here, we describe the recent shift from costly and complex engineering solutions to recover degraded reef structure to more economical and efficient ecological approaches that focus on recovering the living components of reef communities. We review the adoption and expansion of the coral gardening framework in the Caribbean and Western Atlantic where practitioners now grow and outplant 10,000's of corals onto degraded reefs each year. We detail the steps for establishing a gardening program as well as long-term goals and direct and indirect benefits of this approach in our region. With a strong scientific basis, coral gardening activities now contribute significantly to reef and species recovery, provide important scientific, education, and outreach opportunities, and offer alternate livelihoods to local stakeholders. While challenges still remain, the transition from engineering to ecological solutions for reef degradation has opened the field of coral reef restoration to a wider audience poised to contribute to reef conservation and recovery in regions where coral losses and recruitment bottlenecks hinder natural recovery.

The Role of Turtles as Coral Reef Macroherbivores

PubMed Central

Goatley, Christopher H. R.; Hoey, Andrew S.; Bellwood, David R.

2012-01-01

Herbivory is widely accepted as a vital function on coral reefs. To date, the majority of studies examining herbivory in coral reef environments have focused on the roles of fishes and/or urchins, with relatively few studies considering the potential role of macroherbivores in reef processes. Here, we introduce evidence that highlights the potential role of marine turtles as herbivores on coral reefs. While conducting experimental habitat manipulations to assess the roles of herbivorous reef fishes we observed green turtles (Chelonia mydas) and hawksbill turtles (Eretmochelys imbricata) showing responses that were remarkably similar to those of herbivorous fishes. Reducing the sediment load of the epilithic algal matrix on a coral reef resulted in a forty-fold increase in grazing by green turtles. Hawksbill turtles were also observed to browse transplanted thalli of the macroalga Sargassum swartzii in a coral reef environment. These responses not only show strong parallels to herbivorous reef fishes, but also highlight that marine turtles actively, and intentionally, remove algae from coral reefs. When considering the size and potential historical abundance of marine turtles we suggest that these potentially valuable herbivores may have been lost from many coral reefs before their true importance was understood. PMID:22768189

The role of turtles as coral reef macroherbivores.

PubMed

Goatley, Christopher H R; Hoey, Andrew S; Bellwood, David R

2012-01-01

Herbivory is widely accepted as a vital function on coral reefs. To date, the majority of studies examining herbivory in coral reef environments have focused on the roles of fishes and/or urchins, with relatively few studies considering the potential role of macroherbivores in reef processes. Here, we introduce evidence that highlights the potential role of marine turtles as herbivores on coral reefs. While conducting experimental habitat manipulations to assess the roles of herbivorous reef fishes we observed green turtles (Chelonia mydas) and hawksbill turtles (Eretmochelys imbricata) showing responses that were remarkably similar to those of herbivorous fishes. Reducing the sediment load of the epilithic algal matrix on a coral reef resulted in a forty-fold increase in grazing by green turtles. Hawksbill turtles were also observed to browse transplanted thalli of the macroalga Sargassum swartzii in a coral reef environment. These responses not only show strong parallels to herbivorous reef fishes, but also highlight that marine turtles actively, and intentionally, remove algae from coral reefs. When considering the size and potential historical abundance of marine turtles we suggest that these potentially valuable herbivores may have been lost from many coral reefs before their true importance was understood.

Framework of barrier reefs threatened by ocean acidification.

PubMed

Comeau, Steeve; Lantz, Coulson A; Edmunds, Peter J; Carpenter, Robert C

2016-03-01

To date, studies of ocean acidification (OA) on coral reefs have focused on organisms rather than communities, and the few community effects that have been addressed have focused on shallow back reef habitats. The effects of OA on outer barrier reefs, which are the most striking of coral reef habitats and are functionally and physically different from back reefs, are unknown. Using 5-m long outdoor flumes to create treatment conditions, we constructed coral reef communities comprised of calcified algae, corals, and reef pavement that were assembled to match the community structure at 17 m depth on the outer barrier reef of Moorea, French Polynesia. Communities were maintained under ambient and 1200 μatm pCO2 for 7 weeks, and net calcification rates were measured at different flow speeds. Community net calcification was significantly affected by OA, especially at night when net calcification was depressed ~78% compared to ambient pCO2 . Flow speed (2-14 cm s(-1) ) enhanced net calcification only at night under elevated pCO2 . Reef pavement also was affected by OA, with dissolution ~86% higher under elevated pCO2 compared to ambient pCO2 . These results suggest that net accretion of outer barrier reef communities will decline under OA conditions predicted within the next 100 years, largely because of increased dissolution of reef pavement. Such extensive dissolution poses a threat to the carbonate foundation of barrier reef communities. © 2015 John Wiley & Sons Ltd.

Predicting climate-driven regime shifts versus rebound potential in coral reefs.

PubMed

Graham, Nicholas A J; Jennings, Simon; MacNeil, M Aaron; Mouillot, David; Wilson, Shaun K

2015-02-05

Climate-induced coral bleaching is among the greatest current threats to coral reefs, causing widespread loss of live coral cover. Conditions under which reefs bounce back from bleaching events or shift from coral to algal dominance are unknown, making it difficult to predict and plan for differing reef responses under climate change. Here we document and predict long-term reef responses to a major climate-induced coral bleaching event that caused unprecedented region-wide mortality of Indo-Pacific corals. Following loss of >90% live coral cover, 12 of 21 reefs recovered towards pre-disturbance live coral states, while nine reefs underwent regime shifts to fleshy macroalgae. Functional diversity of associated reef fish communities shifted substantially following bleaching, returning towards pre-disturbance structure on recovering reefs, while becoming progressively altered on regime shifting reefs. We identified threshold values for a range of factors that accurately predicted ecosystem response to the bleaching event. Recovery was favoured when reefs were structurally complex and in deeper water, when density of juvenile corals and herbivorous fishes was relatively high and when nutrient loads were low. Whether reefs were inside no-take marine reserves had no bearing on ecosystem trajectory. Although conditions governing regime shift or recovery dynamics were diverse, pre-disturbance quantification of simple factors such as structural complexity and water depth accurately predicted ecosystem trajectories. These findings foreshadow the likely divergent but predictable outcomes for reef ecosystems in response to climate change, thus guiding improved management and adaptation.

Holocene key coral species in the Northwest Pacific: indicators of reef formation and reef ecosystem responses to global climate change and anthropogenic stresses in the near future

NASA Astrophysics Data System (ADS)

Hongo, Chuki

2012-03-01

The geological record of key coral species that contribute to reef formation and maintenance of reef ecosystems is important for understanding the ecosystem response to global-scale climate change and anthropogenic stresses in the near future. Future responses can be predicted from accumulated data on Holocene reef species identified in drillcore and from data on raised reef terraces. The present study analyzes a dataset based on 27 drillcores, raised reef terraces, and 134 radiocarbon and U-Th ages from reefs of the Northwest Pacific, with the aim of examining the role of key coral species in reef growth and maintenance for reef ecosystem during Holocene sea-level change. The results indicate a latitudinal change in key coral species: arborescent Acropora (Acropora intermedia and Acropora muricata) was the dominant reef builder at reef crests in the tropics, whereas Porites (Porites australiensis, Porites lutea, and Porites lobata) was the dominant contributor to reef growth in the subtropics between 10,000 and 7000 cal. years BP (when the rate of sea-level rise was 10 m/ka). Acropora digitifera, Acropora hyacinthus, Acropora robusta/A. abrotanoides, Isopora palifera, Favia stelligera, and Goniastrea retiformis from the corymbose and tabular Acropora facies were the main key coral species at reef crests between 7000 and 5000 cal. years BP (when the rate of sea-level rise was 5 m/ka) and during the following period of stable sea-level. Massive Porites (P. australiensis, P. lutea, and P. lobata) contributed to reef growth in shallow lagoons during the period of stable sea level. Key coral species from the corymbose and tabular Acropora facies have the potential to build reefs and maintain ecosystems in the near future under a global sea-level rise of 2-6 m/ka, as do key coral species from the arborescent Acropora facies and massive Porites facies, which show vigorous growth and are tolerant to relatively deep-water, low-energy environments. However, these species are likely to experience severe mortality in upcoming decades due to natural and anthropogenic stresses. Consequently, this damage will lead to a collapse in reef formation and the maintenance of reef ecosystems in the near future. This study emphasizes the need for research into the conservation of key coral species.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Miyazaki, Tadakuni; Harashima, Akira; Nakatani, Yukihiro

Coral reefs are the major sites for photo-synthesis and calcification in the present ocean. Estimating the production rate of calcification by the coral reefs or investigating the sink/source mechanism of CO{sub 2} by the coral reefs in the ocean, the distribution of the coral reefs in the world wide must be identified. Measuring the spectral signatures of underwater coral reefs and mapping of coral reefs by satellite remote sensing are described. The spectral signatures of different species of the coral reefs were measured using a spectroradiometer at off Kuroshima Island, Okinawa, Japan and investigated spectral difference between different species ofmore » the coral reefs. As well as the field experiments, laboratory experiments for measuring the spectral signatures of 9 different species of coral reefs were carried out with the same spectroradiometer. The spectral reflectance of each coral reef showed a significant result that a narrow absorption band exists in the spectral region between 660 and 680 nm, and very strong spectral reflectance from about 700 nm towards the longer wavelength range. On the other hand, absorption and the high reflectance region were not observed from the bottom sands or bare rocks underwater. These experiments suggested that there is a significant spectral difference between coral reefs and bottom sands or bare rocks and so the best spectral range for separating the coral reefs from other underwater objects in the ocean would be between 700 and 800 nm. As well as the basic spectral measurement either in the field or at the laboratory, SPOT satellite imageries were used to classify the underwater coral reefs. Classification methods used here were the principal component analysis, and the maximum likelihood. Finally, the evaluation of classification method for extracting the coral reefs was introduced.« less

Reef Sharks Exhibit Site-Fidelity and Higher Relative Abundance in Marine Reserves on the Mesoamerican Barrier Reef

PubMed Central

Bond, Mark E.; Babcock, Elizabeth A.; Pikitch, Ellen K.; Abercrombie, Debra L.; Lamb, Norlan F.; Chapman, Demian D.

2012-01-01

Carcharhinid sharks can make up a large fraction of the top predators inhabiting tropical marine ecosystems and have declined in many regions due to intense fishing pressure. There is some support for the hypothesis that carcharhinid species that complete their life-cycle within coral reef ecosystems, hereafter referred to as “reef sharks”, are more abundant inside no-take marine reserves due to a reduction in fishing pressure (i.e., they benefit from marine reserves). Key predictions of this hypothesis are that (a) individual reef sharks exhibit high site-fidelity to these protected areas and (b) their relative abundance will generally be higher in these areas compared to fished reefs. To test this hypothesis for the first time in Caribbean coral reef ecosystems we combined acoustic monitoring and baited remote underwater video (BRUV) surveys to measure reef shark site-fidelity and relative abundance, respectively. We focused on the Caribbean reef shark (Carcharhinus perezi), the most common reef shark in the Western Atlantic, at Glover's Reef Marine Reserve (GRMR), Belize. Acoustically tagged sharks (N = 34) were detected throughout the year at this location and exhibited strong site-fidelity. Shark presence or absence on 200 BRUVs deployed at GRMR and three other sites (another reserve site and two fished reefs) showed that the factor “marine reserve” had a significant positive effect on reef shark presence. We rejected environmental factors or site-environment interactions as predominant drivers of this pattern. These results are consistent with the hypothesis that marine reserves can benefit reef shark populations and we suggest new hypotheses to determine the underlying mechanism(s) involved: reduced fishing mortality or enhanced prey availability. PMID:22412965

Coral Reef Color: Remote and In-Situ Imaging Spectroscopy of Reef Structure and Function

NASA Astrophysics Data System (ADS)

Hochberg, E. J.

2016-02-01

Coral reefs are threatened at local to global scales by a litany of anthropogenic impacts, including overfishing, coastal development, marine and watershed pollution, rising ocean temperatures, and ocean acidification. However, available data for the primary indicator of coral reef condition — proportional cover of living coral — are surprisingly sparse and show patterns that contradict the prevailing understanding of how environment impacts reef condition. Remote sensing is the only available tool for acquiring synoptic, uniform data on reef condition at regional to global scales. Discrimination between coral and other reef benthos relies on narrow wavebands afforded by imaging spectroscopy. The same spectral information allows non-invasive quantification of photosynthetic pigment composition, which shows unexpected phenological trends. There is also potential to link biodiversity with optical diversity, though there has been no effort in that direction. Imaging spectroscopy underlies the light-use efficiency model for reef primary production by quantifying light capture, which in turn indicates biochemical capacity for CO2 assimilation. Reef calcification is strongly correlated with primary production, suggesting the possibility for an optics-based model of that aspect of reef function, as well. By scaling these spectral models for use with remote sensing, we can vastly improve our understanding of reef structure, function, and overall condition across regional to global scales. By analyzing those remote sensing products against ancillary environmental data, we can construct secondary models to predict reef futures in the era of global change. This final point is the objective of CORAL (COral Reef Airborne Laboratory), a three-year project funded under NASA's Earth Venture Suborbital-2 program to investigate the relationship between coral reef condition at the ecosystem scale and various nominal biogeophysical forcing parameters.

Battelle developing reefs to ease habitat losses

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1993-04-01

Artificial reefs may be the answer to solving a worldwide problem of declining fish habitats, or they may only be good for creating fishing spots. Researchers at Battelle's Ocean Sciences Laboratory in Duxbury, Massachusetts, are studying artificial reefs in the Delaware River to determine if they are a solution to habitat losses in estuaries and coastal regions. [open quotes]Right now, we don't know if the fish are using the reefs simply as a grazing land, and then moving on, or if they're using the areas to colonize,[close quotes] said researcher Karen Foster. [open quotes]Ultimately, we hope to find they aremore » colonizing.[close quotes] In 1989, Battelle researchers placed 16 prefabricated concrete reefs 45 feet deep in Delaware Bay. The reefs were placed in clusters of four, and monitoring began the following year. The federal government ordered the reefs placed in the bay as a mitigation technique for fish habitat that was lost when the river was dredged for navigational purposes. Researchers examined the reefs twice last summer. It will take five years, Foster said, before researchers can determine if the reefs are increasing the fish population. Early tests show, however, the populations of mussels, sponges, corals, and anemones increased by up to 150 percent over an area of bay bottom where the reefs were placed. Divers take crustacean samples from the reefs, and fish are caught near the reefs for examination. Researchers dissect the fish stomachs and analyze the contents to determine if they have been feeding at the reefs. [open quotes]If we find blue mussels in the stomach of the fish, that's great because we know that blue mussels are growing on the reef,[close quotes] Foster said.« less

Coral Reef Color: Remote and In-Situ Imaging Spectroscopy of Reef Structure and Function

NASA Astrophysics Data System (ADS)

Hochberg, E. J.

2015-12-01

Coral reefs are threatened at local to global scales by a litany of anthropogenic impacts, including overfishing, coastal development, marine and watershed pollution, rising ocean temperatures, and ocean acidification. However, available data for the primary indicator of coral reef condition — proportional cover of living coral — are surprisingly sparse and show patterns that contradict the prevailing understanding of how environment impacts reef condition. Remote sensing is the only available tool for acquiring synoptic, uniform data on reef condition at regional to global scales. Discrimination between coral and other reef benthos relies on narrow wavebands afforded by imaging spectroscopy. The same spectral information allows non-invasive quantification of photosynthetic pigment composition, which shows unexpected phenological trends. There is also potential to link biodiversity with optical diversity, though there has been no effort in that direction. Imaging spectroscopy underlies the light-use efficiency model for reef primary production by quantifying light capture, which in turn indicates biochemical capacity for CO2 assimilation. Reef calcification is strongly correlated with primary production, suggesting the possibility for an optics-based model of that aspect of reef function, as well. By scaling these spectral models for use with remote sensing, we can vastly improve our understanding of reef structure, function, and overall condition across regional to global scales. By analyzing those remote sensing products against ancillary environmental data, we can construct secondary models to predict reef futures in the era of global change. This final point is the objective of CORAL (COral Reef Airborne Laboratory), a three-year project funded under NASA's Earth Venture Suborbital-2 program to investigate the relationship between coral reef condition at the ecosystem scale and various nominal biogeophysical forcing parameters.

The wicked problem of China's disappearing coral reefs.

PubMed

Hughes, Terry P; Huang, Hui; Young, Matthew A L

2013-04-01

We examined the development of coral reef science and the policies, institutions, and governance frameworks for management of coral reefs in China in order to highlight the wicked problem of preserving reefs while simultaneously promoting human development and nation building. China and other sovereign states in the region are experiencing unprecedented economic expansion, rapid population growth, mass migration, widespread coastal development, and loss of habitat. We analyzed a large, fragmented literature on the condition of coral reefs in China and the disputed territories of the South China Sea. We found that coral abundance has declined by at least 80% over the past 30 years on coastal fringing reefs along the Chinese mainland and adjoining Hainan Island. On offshore atolls and archipelagos claimed by 6 countries in the South China Sea, coral cover has declined from an average of >60% to around 20% within the past 10-15 years. Climate change has affected these reefs far less than coastal development, pollution, overfishing, and destructive fishing practices. Ironically, these widespread declines in the condition of reefs are unfolding as China's research and reef-management capacity are rapidly expanding. Before the loss of corals becomes irreversible, governance of China's coastal reefs could be improved by increasing public awareness of declining ecosystem services, by providing financial support for training of reef scientists and managers, by improving monitoring of coral reef dynamics and condition to better inform policy development, and by enforcing existing regulations that could protect coral reefs. In the South China Sea, changes in policy and legal frameworks, refinement of governance structures, and cooperation among neighboring countries are urgently needed to develop cooperative management of contested offshore reefs. © 2012 Society for Conservation Biology.

Relationships between reef fish communities and remotely sensed rugosity measurements in Biscayne National Park, Florida, USA

USGS Publications Warehouse

Kuffner, Ilsa B.; Brock, John C.; Grober-Dunsmore, Rikki; Bonito, Victor E.; Hickey, T. Donald; Wright, C. Wayne

2007-01-01

The realization that coral reef ecosystem management must occur across multiple spatial scales and habitat types has led scientists and resource managers to seek variables that are easily measured over large areas and correlate well with reef resources. Here we investigate the utility of new technology in airborne laser surveying (NASA Experimental Advanced Airborne Research Lidar (EAARL)) in assessing topographical complexity (rugosity) to predict reef fish community structure on shallow (n = 10–13 per reef). Rugosity at each station was assessed in situ by divers using the traditional chain-transect method (10-m scale), and remotely using the EAARL submarine topography data at multiple spatial scales (2, 5, and 10 m). The rugosity and biological datasets were analyzed together to elucidate the predictive power of EAARL rugosity in describing the variance in reef fish community variables and to assess the correlation between chain-transect and EAARL rugosity. EAARL rugosity was not well correlated with chain-transect rugosity, or with species richness of fishes (although statistically significant, the amount of variance explained by the model was very low). Variance in reef fish community attributes was better explained in reef-by-reef variability than by physical variables. However, once the reef-by-reef variability was taken into account in a two-way analysis of variance, the importance of rugosity could be seen on individual reefs. Fish species richness and abundance were statistically higher at high rugosity stations compared to medium and low rugosity stations, as predicted by prior ecological research. The EAARL shows promise as an important mapping tool for reef resource managers as they strive to inventory and protect coral reef resources.

Budget of coral-derived organic carbon in a fringing coral reef of the Gulf of Aqaba, Red Sea

NASA Astrophysics Data System (ADS)

Naumann, Malik S.; Richter, Claudio; Mott, Claudius; el-Zibdah, Mohammad; Manasrah, Riyad; Wild, Christian

2012-12-01

The continuous release of organic C-rich material by reef-building corals can contribute substantially to biogeochemical processes and concomitant rapid nutrient recycling in coral reef ecosystems. However, our current understanding of these processes is limited to platform reefs exhibiting a high degree of ecosystem closure compared to the globally most common fringing reef type. This study carried out in the northern Gulf of Aqaba (Red Sea) presents the first quantitative budget for coral-derived organic carbon (COC) in a fringing reef and highlights the importance of local hydrodynamics. Diel reef-wide COC release amounted to 1.1 ± 0.2 kmol total organic carbon (TOC) representing 1-3% of gross benthic primary production. Most COC (73%) was released as particulate organic C (POC), the bulk of which (34-63%) rapidly settled as mucus string aggregates accounting for approximately 28% of total POC sedimentation. Sedimentation of mucus strings, but also dilution of suspended and dissolved COC in reef waters retained 82% of diel COC release in the fringing reef, providing a potentially important organic source for a COC-based food web. Pelagic COC degradation represented 0.1-1.6% of pelagic microbial respiration recycling 32% of diel retained COC. Benthic COC degradation contributed substantially (29-47%) to reef-wide microbial respiration in reef sands, including 20-38% by mucus string POC, and consumed approximately 52% of all retained COC. These findings point out the importance of COC as a C carrier for different reef types. COC may further represent a source of organic carbon for faunal communities colonising reef framework cavities complementing the efficient retention and recycling of COC within fringing reef environments.

Remote coral reefs can sustain high growth potential and may match future sea-level trends

PubMed Central

Perry, Chris T.; Murphy, Gary N.; Graham, Nicholas A. J.; Wilson, Shaun K.; Januchowski-Hartley, Fraser A.; East, Holly K.

2015-01-01

Climate-induced disturbances are contributing to rapid, global-scale changes in coral reef ecology. As a consequence, reef carbonate budgets are declining, threatening reef growth potential and thus capacity to track rising sea-levels. Whether disturbed reefs can recover their growth potential and how rapidly, are thus critical research questions. Here we address these questions by measuring the carbonate budgets of 28 reefs across the Chagos Archipelago (Indian Ocean) which, while geographically remote and largely isolated from compounding human impacts, experienced severe (>90%) coral mortality during the 1998 warming event. Coral communities on most reefs recovered rapidly and we show that carbonate budgets in 2015 average +3.7 G (G = kg CaCO3 m−2 yr−1). Most significantly the production rates on Acropora-dominated reefs, the corals most severely impacted in 1998, averaged +8.4 G by 2015, comparable with estimates under pre-human (Holocene) disturbance conditions. These positive budgets are reflected in high reef growth rates (4.2 mm yr−1) on Acropora-dominated reefs, demonstrating that carbonate budgets on these remote reefs have recovered rapidly from major climate-driven disturbances. Critically, these reefs retain the capacity to grow at rates exceeding measured regional mid-late Holocene and 20th century sea-level rise, and close to IPCC sea-level rise projections through to 2100. PMID:26669758

Remote coral reefs can sustain high growth potential and may match future sea-level trends.

PubMed

Perry, Chris T; Murphy, Gary N; Graham, Nicholas A J; Wilson, Shaun K; Januchowski-Hartley, Fraser A; East, Holly K

2015-12-16

Climate-induced disturbances are contributing to rapid, global-scale changes in coral reef ecology. As a consequence, reef carbonate budgets are declining, threatening reef growth potential and thus capacity to track rising sea-levels. Whether disturbed reefs can recover their growth potential and how rapidly, are thus critical research questions. Here we address these questions by measuring the carbonate budgets of 28 reefs across the Chagos Archipelago (Indian Ocean) which, while geographically remote and largely isolated from compounding human impacts, experienced severe (>90%) coral mortality during the 1998 warming event. Coral communities on most reefs recovered rapidly and we show that carbonate budgets in 2015 average +3.7 G (G = kg CaCO3 m(-2) yr(-1)). Most significantly the production rates on Acropora-dominated reefs, the corals most severely impacted in 1998, averaged +8.4 G by 2015, comparable with estimates under pre-human (Holocene) disturbance conditions. These positive budgets are reflected in high reef growth rates (4.2 mm yr(-1)) on Acropora-dominated reefs, demonstrating that carbonate budgets on these remote reefs have recovered rapidly from major climate-driven disturbances. Critically, these reefs retain the capacity to grow at rates exceeding measured regional mid-late Holocene and 20th century sea-level rise, and close to IPCC sea-level rise projections through to 2100.

40 CFR 230.44 - Coral reefs.

Code of Federal Regulations, 2014 CFR

2014-07-01

... 40 Protection of Environment 25 2014-07-01 2014-07-01 false Coral reefs. 230.44 Section 230.44... Aquatic Sites § 230.44 Coral reefs. (a) Coral reefs consist of the skeletal deposit, usually of calcareous... organisms present in growing portions of the reef. (b) Possible loss of values: The discharge of dredged or...

40 CFR 230.44 - Coral reefs.

Code of Federal Regulations, 2012 CFR

2012-07-01

... 40 Protection of Environment 26 2012-07-01 2011-07-01 true Coral reefs. 230.44 Section 230.44... Aquatic Sites § 230.44 Coral reefs. (a) Coral reefs consist of the skeletal deposit, usually of calcareous... organisms present in growing portions of the reef. (b) Possible loss of values: The discharge of dredged or...

40 CFR 230.44 - Coral reefs.

Code of Federal Regulations, 2013 CFR

2013-07-01

... 40 Protection of Environment 26 2013-07-01 2013-07-01 false Coral reefs. 230.44 Section 230.44... Aquatic Sites § 230.44 Coral reefs. (a) Coral reefs consist of the skeletal deposit, usually of calcareous... organisms present in growing portions of the reef. (b) Possible loss of values: The discharge of dredged or...

40 CFR 230.44 - Coral reefs.

Code of Federal Regulations, 2011 CFR

2011-07-01

... 40 Protection of Environment 25 2011-07-01 2011-07-01 false Coral reefs. 230.44 Section 230.44... Aquatic Sites § 230.44 Coral reefs. (a) Coral reefs consist of the skeletal deposit, usually of calcareous... organisms present in growing portions of the reef. (b) Possible loss of values: The discharge of dredged or...

40 CFR 230.44 - Coral reefs.

Code of Federal Regulations, 2010 CFR

2010-07-01

... 40 Protection of Environment 24 2010-07-01 2010-07-01 false Coral reefs. 230.44 Section 230.44... Aquatic Sites § 230.44 Coral reefs. (a) Coral reefs consist of the skeletal deposit, usually of calcareous... organisms present in growing portions of the reef. (b) Possible loss of values: The discharge of dredged or...

Coral Reef and Coastal Ecosystems Decision Support Workshop April 27-29, 2010 Caribbean Coral Reef Institute, La Parguera, Puerto Rico

EPA Science Inventory

The U.S. Environmental Protection Agency (EPA) and Caribbean Coral Reef Institute (CCRI) hosted a Coral Reef and Coastal Ecosystems Decision Support Workshop on April 27-28, 2010 at the Caribbean Coral Reef Institute in La Parguera, Puerto Rico. Forty-three participants, includin...

Global effects of local human population density and distance to markets on the condition of coral reef fisheries.

PubMed

Cinner, Joshua E; Graham, Nicholas A J; Huchery, Cindy; Macneil, M Aaron

2013-06-01

Coral reef fisheries support the livelihoods of millions of people but have been severely and negatively affected by anthropogenic activities. We conducted a systematic review of published data on the biomass of coral reef fishes to explore how the condition of reef fisheries is related to the density of local human populations, proximity of the reef to markets, and key environmental variables (including broad geomorphologic reef type, reef area, and net productivity). When only population density and environmental covariates were considered, high variability in fisheries conditions at low human population densities resulted in relatively weak explanatory models. The presence or absence of human settlements, habitat type, and distance to fish markets provided a much stronger explanatory model for the condition of reef fisheries. Fish biomass remained relatively low within 14 km of markets, then biomass increased exponentially as distance from reefs to markets increased. Our results suggest the need for an increased science and policy focus on markets as both a key driver of the condition of reef fisheries and a potential source of solutions. © 2012 Society for Conservation Biology.

Meteorologic, oceanographic, and geomorphic controls on circulation and residence time in a coral reef-lined embayment: Faga'alu Bay, American Samoa

NASA Astrophysics Data System (ADS)

Storlazzi, C. D.; Cheriton, O. M.; Messina, A. M.; Biggs, T. W.

2018-06-01

Water circulation over coral reefs can determine the degree to which reef organisms are exposed to the overlying waters, so understanding circulation is necessary to interpret spatial patterns in coral health. Because coral reefs often have high geomorphic complexity, circulation patterns and the duration of exposure, or "local residence time" of a water parcel, can vary substantially over small distances. Different meteorologic and oceanographic forcings can further alter residence time patterns over reefs. Here, spatially dense Lagrangian surface current drifters and Eulerian current meters were used to characterize circulation patterns and resulting residence times over different regions of the reefs in Faga'alu Bay, American Samoa, during three distinct forcing periods: calm, strong winds, and large waves. Residence times varied among different geomorphic zones of the reef and were reflected in the spatially varying health of the corals across the embayment. The relatively healthy, seaward fringing reef consistently had the shortest residence times, as it was continually flushed by wave breaking at the reef crest, whereas the degraded, sheltered, leeward fringing reef consistently had the longest residence times, suggesting this area is more exposed to land-based sources of pollution. Strong wind forcing resulted in the longest residence times by pinning the water in the bay, whereas large wave forcing flushed the bay and resulted in the shortest residence times. The effect of these different forcings on residence times was fairly consistent across all reef geomorphic zones, with the shift from wind to wave forcing shortening mean residence times by approximately 50%. Although ecologically significant to the coral organisms in the nearshore reef zones, these shortened residence times were still 2-3 times longer than those associated with the seaward fringing reef across all forcing conditions, demonstrating how the geomorphology of a reef environment sets a first-order control on reef health.

Feedbacks Between Wave Energy And Declining Coral Reef Structure: Implications For Coastal Morphodynamics

NASA Astrophysics Data System (ADS)

Grady, A. E.; Jenkins, C. J.; Moore, L. J.; Potts, D. C.; Burgess, P. M.; Storlazzi, C. D.; Elias, E.; Reidenbach, M. A.

2013-12-01

The incident wave energy dissipated by the structural complexity and bottom roughness of coral reef ecosystems, and the carbonate sediment produced by framework-building corals, provide natural shoreline protection and nourishment, respectively. Globally, coral reef ecosystems are in decline as a result of ocean warming and acidification, which is exacerbated by chronic regional stressors such as pollution and disease. As a consequence of declining reef health, many reef ecosystems are experiencing reduced coral cover and shifts to dominance by macroalgae, resulting in a loss of rugosity and thus hydrodynamic roughness. As coral reef architecture is compromised and carbonate skeletons are eroded, wave energy dissipation and sediment transport patterns--along with the carbonate sediment budget of the coastal environment--may be altered. Using a Delft3D numerical model of the south-central Molokai, Hawaii, fringing reef, we simulate the effects of changing reef states on wave energy and sediment transport. To determine the temporally-varying effects of biotic and abiotic stressors such as storms and bleaching on the reef structure and carbonate production, we couple Delft3D with CarboLOT, a model that simulates growth and competition of carbonate-producing organisms. CarboLOT is driven by the Lotka-Volterra population ecology equations and niche suitability principles, and accesses the CarboKB database for region-specific, carbonate-producing species information on growth rates, reproduction patterns, habitat suitability, as well as organism geometries. Simulations assess how changing reef states--which alter carbonate sediment production and reef morphology and thus hydrodynamic roughness--impact wave attenuation and sediment transport gradients along reef-fronted beaches. Initial results suggest that along fringing reefs having characteristics similar to the Molokai fringing reef, projected sea level rise will likely outpace coral reef accretion, and the increased residual wave energy transported to the coast may result in the alteration of alongshore sediment transport gradients and substantial changes to coastal morphology.

Coral Reefs on the Edge? Carbon Chemistry on Inshore Reefs of the Great Barrier Reef

PubMed Central

Uthicke, Sven; Furnas, Miles; Lønborg, Christian

2014-01-01

While increasing atmospheric carbon dioxide (CO2) concentration alters global water chemistry (Ocean Acidification; OA), the degree of changes vary on local and regional spatial scales. Inshore fringing coral reefs of the Great Barrier Reef (GBR) are subjected to a variety of local pressures, and some sites may already be marginal habitats for corals. The spatial and temporal variation in directly measured parameters: Total Alkalinity (TA) and dissolved inorganic carbon (DIC) concentration, and derived parameters: partial pressure of CO2 (pCO2); pH and aragonite saturation state (Ωar) were measured at 14 inshore reefs over a two year period in the GBR region. Total Alkalinity varied between 2069 and 2364 µmol kg−1 and DIC concentrations ranged from 1846 to 2099 µmol kg−1. This resulted in pCO2 concentrations from 340 to 554 µatm, with higher values during the wet seasons and pCO2 on inshore reefs distinctly above atmospheric values. However, due to temperature effects, Ωar was not further reduced in the wet season. Aragonite saturation on inshore reefs was consistently lower and pCO2 higher than on GBR reefs further offshore. Thermodynamic effects contribute to this, and anthropogenic runoff may also contribute by altering productivity (P), respiration (R) and P/R ratios. Compared to surveys 18 and 30 years ago, pCO2 on GBR mid- and outer-shelf reefs has risen at the same rate as atmospheric values (∼1.7 µatm yr−1) over 30 years. By contrast, values on inshore reefs have increased at 2.5 to 3 times higher rates. Thus, pCO2 levels on inshore reefs have disproportionately increased compared to atmospheric levels. Our study suggests that inshore GBR reefs are more vulnerable to OA and have less buffering capacity compared to offshore reefs. This may be caused by anthropogenically induced trophic changes in the water column and benthos of inshore reefs subjected to land runoff. PMID:25295864

Linking Demographic Processes of Juvenile Corals to Benthic Recovery Trajectories in Two Common Reef Habitats

PubMed Central

Doropoulos, Christopher; Ward, Selina; Roff, George; González-Rivero, Manuel; Mumby, Peter J.

2015-01-01

Tropical reefs are dynamic ecosystems that host diverse coral assemblages with different life-history strategies. Here, we quantified how juvenile (<50 mm) coral demographics influenced benthic coral structure in reef flat and reef slope habitats on the southern Great Barrier Reef, Australia. Permanent plots and settlement tiles were monitored every six months for three years in each habitat. These environments exhibited profound differences: the reef slope was characterised by 95% less macroalgal cover, and twice the amount of available settlement substrata and rates of coral settlement than the reef flat. Consequently, post-settlement coral survival in the reef slope was substantially higher than that of the reef flat, and resulted in a rapid increase in coral cover from 7 to 31% in 2.5 years. In contrast, coral cover on the reef flat remained low (~10%), whereas macroalgal cover increased from 23 to 45%. A positive stock-recruitment relationship was found in brooding corals in both habitats; however, brooding corals were not directly responsible for the observed changes in coral cover. Rather, the rapid increase on the reef slope resulted from high abundances of broadcast spawning Acropora recruits. Incorporating our results into transition matrix models demonstrated that most corals escape mortality once they exceed 50 mm, but for smaller corals mortality in brooders was double those of spawners (i.e. acroporids and massive corals). For corals on the reef flat, sensitivity analysis demonstrated that growth and mortality of larger juveniles (21–50 mm) highly influenced population dynamics; whereas the recruitment, growth and mortality of smaller corals (<20 mm) had the highest influence on reef slope population dynamics. Our results provide insight into the population dynamics and recovery trajectories in disparate reef habitats, and highlight the importance of acroporid recruitment in driving rapid increases in coral cover following large-scale perturbation in reef slope environments. PMID:26009892

Linking demographic processes of juvenile corals to benthic recovery trajectories in two common reef habitats.

PubMed

Doropoulos, Christopher; Ward, Selina; Roff, George; González-Rivero, Manuel; Mumby, Peter J

2015-01-01

Tropical reefs are dynamic ecosystems that host diverse coral assemblages with different life-history strategies. Here, we quantified how juvenile (<50 mm) coral demographics influenced benthic coral structure in reef flat and reef slope habitats on the southern Great Barrier Reef, Australia. Permanent plots and settlement tiles were monitored every six months for three years in each habitat. These environments exhibited profound differences: the reef slope was characterised by 95% less macroalgal cover, and twice the amount of available settlement substrata and rates of coral settlement than the reef flat. Consequently, post-settlement coral survival in the reef slope was substantially higher than that of the reef flat, and resulted in a rapid increase in coral cover from 7 to 31% in 2.5 years. In contrast, coral cover on the reef flat remained low (~10%), whereas macroalgal cover increased from 23 to 45%. A positive stock-recruitment relationship was found in brooding corals in both habitats; however, brooding corals were not directly responsible for the observed changes in coral cover. Rather, the rapid increase on the reef slope resulted from high abundances of broadcast spawning Acropora recruits. Incorporating our results into transition matrix models demonstrated that most corals escape mortality once they exceed 50 mm, but for smaller corals mortality in brooders was double those of spawners (i.e. acroporids and massive corals). For corals on the reef flat, sensitivity analysis demonstrated that growth and mortality of larger juveniles (21-50 mm) highly influenced population dynamics; whereas the recruitment, growth and mortality of smaller corals (<20 mm) had the highest influence on reef slope population dynamics. Our results provide insight into the population dynamics and recovery trajectories in disparate reef habitats, and highlight the importance of acroporid recruitment in driving rapid increases in coral cover following large-scale perturbation in reef slope environments.

Particulate organic matter fluxes and hydrodynamics at the Tisler cold-water coral reef

NASA Astrophysics Data System (ADS)

Wagner, Hannes; Purser, Autun; Thomsen, Laurenz; Jesus, Carlos César; Lundälv, Tomas

2011-03-01

Cold-water coral reefs occur in many regions of the world's oceans. Fundamental questions regarding their functioning remain unanswered. These include the biogeochemical influence of reefs on their environment ("reef effects") and the influence of hydrodynamic processes on reef nutrition. In a succession of field campaigns in 2007 and 2008, these questions were addressed at the Tisler cold-water coral reef, which is centered on a sill peak in the Norwegian Skagerrak. A variety of methodological approaches were used. These consisted of the collection of CTD and chlorophyll profiles, current measurements, sampling of particulate organic matter (POM) in the benthic boundary layer (BBL) across the reef with subsequent chemical analyses, and the chemical analysis of freshly released Lophelia pertusa mucus. CTD and chlorophyll profiles indicated that downstream of the sill crest, downwelling delivered warmer, fresher and chlorophyll richer water masses down to the BBL. Both sides of the reef received downwelling nutrition delivery, as flow direction over the reef reversed periodically. Several chemical composition indicators revealed that suspended POM was significantly fresher on the downstream side of the reef than on the upstream side. L. pertusa mucus from the Tisler Reef was labile in composition, as indicated by a low C/N ratio and a high amino acid degradation index (DI) value. Particulate organic carbon (POC) content in the BBL was significantly depleted across the reef. Lateral depositional fluxes were calculated to be 18-1485 mg POC m -2 d -1, with a mean of 459 mg POC m -2 d -1. We propose that the combination of fresh, downwelling POM with mucus released from the reef was the cause of the greater lability of the downstream POM. Our data on POC depletion across the reef suggest that cold-water coral reefs could play an important role in carbon cycling along continental margins.

Near-reef elemental signals in the otoliths of settling Pomacentrus amboinensis (Pomacentridae)

NASA Astrophysics Data System (ADS)

Sih, Tiffany L.; Kingsford, Michael J.

2016-03-01

Settlement is a key life history transition for coral reef fishes, and how long a fish spends close to a reef prior to settlement is poorly understood. We used laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) and otolith microstructure analysis (daily increments and settlement marks) to determine the length of time larval fish spend near a reef prior to settlement. The otoliths of Pomacentrus amboinensis collected from four neighbouring reefs in the southern Great Barrier Reef showed clear and consistent differences in their elemental signatures prior to and following settlement. Elevated Ba:Ca near settlement and post-settlement was found in fish from all four reefs. However, there was individual variation in elemental profiles, with an increased otolith Ba-to-Ca ratio (near-reef signature) at settlement in 33 % of fish, and up to 8 d prior to settlement in others. Increment widths, often used as a proxy for growth, decreased approaching the settlement mark for all fish, providing further evidence for a "search phase" in larvae. We demonstrated experimentally that otoliths of fish kept in reefal or inter-reefal waters had different elemental chemistry. There were differences in the elemental composition of water samples within the study area, but no consistent trends with distance from reefs. There was poor discrimination of multi-element signatures among fish from different reefs during their pre-settlement phases. However, discrimination improved in the settlement and post-settlement phases of otoliths, indicating that reef waters and perhaps stage of ontogeny affected otolith chemistry. This study demonstrated clear near-reef elemental signatures in fish around settlement. We suggest these differences are due to a combination of water chemistry and physiological influences (e.g., growth). Combining LA-ICP-MS with otolith microstructure analysis can provide high-resolution information on the early life history of reef fishes. Further, a near-reef "search phase" prior to settlement may be common in reef fishes.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kauffman, E.G.

Throughout the Mesozoic, shallow-water carbonate ramps and platforms of the circumequatorial Tethyan Ocean were characterized by extensive development of reef ecosystems, especially during times of eustatic highstand, expansion of the Tropics, and warm equable global climates. The greatest reef development was north of the paleoequator in the Caribbean and Indo-Mediterranean provinces. These reefs and associated debris facies comprise major petroleum reservoirs, in some cases with remarkable porosity and permeability normally attributed to a combination of sedimentologic, tectonic, and diagenetic factors. The biological evolution of Mesozoic reefs also has had an important, and in some cases dominant, role in determining reservoirmore » quality. Three major biological factors are critical to mesozoic reef-associated reservoir development: (1) the replacement/competitive displacement of coral-algal dominated, highly integrated reef ecosystems by loosely packed rudistid bivalve-dominated reef ecosystems in the Barremian-Albian; (2) the evolution of dominantly aragonitic, highly porous shells among framework-building rudistids in the middle and Late Cretaceous; and (3) competitive strategies among rudistids that effectively prevented widespread biological binding of Cretaceous reefs, leading to the production of large marginal fans that comprise major carbonate reservoirs. Detailed studies of these evolutionary trends in reef/framework development and of the distribution of different groups of bioconstructors on reefs lead to predictive modeling for primary and secondary porosity development in mesozoic carbonate reservoirs. The competitive displacement of coral-algal communities by rudistids on Cretaceous reefs was so effective that, even after Maastrichtian mass extinction of rudistids and other important groups comprising Mesozoic reef/carbonate platform ecosystems, coral-algal reef-building communities did not evolve again until the late Eocene.« less

Tracing Carbon Flow Through Food Webs on Isolated Coral Reefs in the Central Pacific Ocean Using a Compound-Specific Stable Isotope Approach

NASA Astrophysics Data System (ADS)

Thorrold, S.; McMahon, K.; Braun, C.; Berumen, M. L.; Houghton, L. A.

2016-02-01

Coral reefs support spectacularly productive and diverse communities in tropical and sub-tropical waters throughout the world's oceans. Debate continues, however, on the degree to which reef biomass is supported by new water column or benthic primary production and recycled detrital carbon. We coupled analyses of stable carbon isotopes in essential amino acids with Bayesian mixing models to quantify carbon flow from pelagic primary producers, benthic macroalgae and autotrophic symbionts in corals, along with detrital carbon, to coral reef fishes across several feeding guilds and trophic positions, including apex predators (gray reef and black tip reef sharks), on reefs in the Phoenix Islands Protected Area. Excellent separation in multivariate isotope space among end-members at the base of the food web allowed us to quantify the relative proportion of carbon produced by each of the end-members that is assimilated by focal reef fish species. Low local human impacts on the study reefs provided the opportunity to examine carbon fluxs in fully functioning reef food webs, thereby providing an important baseline for examingn human impacts in food webs on stressed reefs in more populated regions in the tropics. Moreover the study reefs are located along a significant gradient in dissolved N concentrations, allowing us to test if end-member proportions vary as a function of pelagic primary productivity levels. Our work provides insights into the roles that diverse carbon sources may play in the structure, function and resilience of coral reef ecosystems.

Drivers and predictions of coral reef carbonate budget trajectories

PubMed Central

Graham, Nicholas A. J.; Jennings, Simon; Perry, Chris T.

2017-01-01

Climate change is one of the greatest threats to the long-term maintenance of coral-dominated tropical ecosystems, and has received considerable attention over the past two decades. Coral bleaching and associated mortality events, which are predicted to become more frequent and intense, can alter the balance of different elements that are responsible for coral reef growth and maintenance. The geomorphic impacts of coral mass mortality have received relatively little attention, particularly questions concerning temporal recovery of reef carbonate production and the factors that promote resilience of reef growth potential. Here, we track the biological carbonate budgets of inner Seychelles reefs from 1994 to 2014, spanning the 1998 global bleaching event when these reefs lost more than 90% of coral cover. All 21 reefs had positive budgets in 1994, but in 2005 budgets were predominantly negative. By 2014, carbonate budgets on seven reefs were comparable with 1994, but on all reefs where an ecological regime shift to macroalgal dominance occurred, budgets remained negative through 2014. Reefs with higher massive coral cover, lower macroalgae cover and lower excavating parrotfish biomass in 1994 were more likely to have positive budgets post-bleaching. If mortality of corals from the 2016 bleaching event is as severe as that of 1998, our predictions based on past trends would suggest that six of eight reefs with positive budgets in 2014 would still have positive budgets by 2030. Our results highlight that reef accretion and framework maintenance cannot be assumed from the ecological state alone, and that managers should focus on conserving aspects of coral reefs that support resilient carbonate budgets. PMID:28123092

Drivers and predictions of coral reef carbonate budget trajectories.

PubMed

Januchowski-Hartley, Fraser A; Graham, Nicholas A J; Wilson, Shaun K; Jennings, Simon; Perry, Chris T

2017-01-25

Climate change is one of the greatest threats to the long-term maintenance of coral-dominated tropical ecosystems, and has received considerable attention over the past two decades. Coral bleaching and associated mortality events, which are predicted to become more frequent and intense, can alter the balance of different elements that are responsible for coral reef growth and maintenance. The geomorphic impacts of coral mass mortality have received relatively little attention, particularly questions concerning temporal recovery of reef carbonate production and the factors that promote resilience of reef growth potential. Here, we track the biological carbonate budgets of inner Seychelles reefs from 1994 to 2014, spanning the 1998 global bleaching event when these reefs lost more than 90% of coral cover. All 21 reefs had positive budgets in 1994, but in 2005 budgets were predominantly negative. By 2014, carbonate budgets on seven reefs were comparable with 1994, but on all reefs where an ecological regime shift to macroalgal dominance occurred, budgets remained negative through 2014. Reefs with higher massive coral cover, lower macroalgae cover and lower excavating parrotfish biomass in 1994 were more likely to have positive budgets post-bleaching. If mortality of corals from the 2016 bleaching event is as severe as that of 1998, our predictions based on past trends would suggest that six of eight reefs with positive budgets in 2014 would still have positive budgets by 2030. Our results highlight that reef accretion and framework maintenance cannot be assumed from the ecological state alone, and that managers should focus on conserving aspects of coral reefs that support resilient carbonate budgets. © 2017 The Authors.

Great Barrier Reef, Queensland, Australia

NASA Image and Video Library

1991-09-18

STS048-151-250 (12-18 Sept. 1991) --- The Great Barrier Reef extends for roughly 2,000 kilometers along the northeast coast of Australia. The great Barrier Reef is made up of thousands of individual reefs which define the edge of the continental shelf. The southern part of the feature, called Swain Reef, is seen here. Water depths around the reefs are quite shallow (less than 1 meter to about 36 meters in depth), but only a few kilometers offshore, water depths are roughly 1,000 meters.

Baseline Assessment of Mesophotic Reefs of the Vitória-Trindade Seamount Chain Based on Water Quality, Microbial Diversity, Benthic Cover and Fish Biomass Data.

PubMed

Meirelles, Pedro M; Amado-Filho, Gilberto M; Pereira-Filho, Guilherme H; Pinheiro, Hudson T; de Moura, Rodrigo L; Joyeux, Jean-Christophe; Mazzei, Eric F; Bastos, Alex C; Edwards, Robert A; Dinsdale, Elizabeth; Paranhos, Rodolfo; Santos, Eidy O; Iida, Tetsuya; Gotoh, Kazuyoshi; Nakamura, Shota; Sawabe, Tomoo; Rezende, Carlos E; Gadelha, Luiz M R; Francini-Filho, Ronaldo B; Thompson, Cristiane; Thompson, Fabiano L

2015-01-01

Seamounts are considered important sources of biodiversity and minerals. However, their biodiversity and health status are not well understood; therefore, potential conservation problems are unknown. The mesophotic reefs of the Vitória-Trindade Seamount Chain (VTC) were investigated via benthic community and fish surveys, metagenomic and water chemistry analyses, and water microbial abundance estimations. The VTC is a mosaic of reef systems and includes fleshy algae dominated rhodolith beds, crustose coralline algae (CCA) reefs, and turf algae dominated rocky reefs of varying health levels. Macro-carnivores and larger fish presented higher biomass at the CCA reefs (4.4 kg per frame) than in the rhodolith beds and rocky reefs (0.0 to 0.1 kg per frame). A larger number of metagenomic sequences identified as primary producers (e.g., Chlorophyta and Streptophyta) were found at the CCA reefs. However, the rocky reefs contained more diseased corals (>90%) than the CCA reefs (~40%) and rhodolith beds (~10%). Metagenomic analyses indicated a heterotrophic and fast-growing microbiome in rocky reef corals that may possibly lead to unhealthy conditions possibly enhanced by environmental features (e.g. light stress and high loads of labile dissolved organic carbon). VTC mounts represent important hotspots of biodiversity that deserve further conservation actions.

Extinction rate, historical population structure and ecological role of the Caribbean monk seal

PubMed Central

McClenachan, Loren; Cooper, Andrew B

2008-01-01

The productivity and biomass of pristine coral reef ecosystems is poorly understood, particularly in the Caribbean where communities have been impacted by overfishing and multiple other stressors over centuries. Using historical data on the spatial distribution and abundance of the extinct Caribbean monk seal (Monachus tropicalis), this study reconstructs the population size, structure and ecological role of this once common predator within coral reef communities, and provides evidence that historical reefs supported biomasses of fishes and invertebrates up to six times greater than those found on typical modern Caribbean reefs. An estimated 233 000–338 000 monk seals were distributed among 13 colonies across the Caribbean. The biomass of reef fishes and invertebrates required to support historical seal populations was 732–1018 g m−2 of reefs, which exceeds that found on any Caribbean reef today and is comparable with those measured in remote Pacific reefs. Quantitative estimates of historically dense monk seal colonies and their consumption rates on pristine reefs provide concrete data on the magnitude of decline in animal biomass on Caribbean coral reefs. Realistic reconstruction of these past ecosystems is critical to understanding the profound and long-lasting effect of human hunting on the functioning of coral reef ecosystems. PMID:18348965

Elevated rates of morphological and functional diversification in reef-dwelling haemulid fishes.

PubMed

Price, Samantha A; Tavera, Jose J; Near, Thomas J; Wainwright, Peter C

2013-02-01

The relationship between habitat complexity and species richness is well established but comparatively little is known about the evolution of morphological diversity in complex habitats. Reefs are structurally complex, highly productive shallow-water marine ecosystems found in tropical (coral reefs) and temperate zones (rocky reefs) that harbor exceptional levels of biodiversity. We investigated whether reef habitats promote the evolution of morphological diversity in the feeding and locomotion systems of grunts (Haemulidae), a group of predominantly nocturnal fishes that live on both temperate and tropical reefs. Using phylogenetic comparative methods and statistical analyses that take into account uncertainty in phylogeny and the evolutionary history of reef living, we demonstrate that rates of morphological evolution are faster in reef-dwelling haemulids. The magnitude of this effect depends on the type of trait; on average, traits involved in the functional systems for prey capture and processing evolve twice as fast on reefs as locomotor traits. This result, along with the observation that haemulids do not exploit unique feeding niches on reefs, suggests that fine-scale trophic niche partitioning and character displacement may be driving higher rates of morphological evolution. Whatever the cause, there is growing evidence that reef habitats stimulate morphological and functional diversification in teleost fishes. © 2012 The Author(s). Evolution© 2012 The Society for the Study of Evolution.

Octocoral Species Assembly and Coexistence in Caribbean Coral Reefs.

PubMed

Velásquez, Johanna; Sánchez, Juan A

2015-01-01

What are the determinant factors of community assemblies in the most diverse ecosystem in the ocean? Coral reefs can be divided in continental (i.e., reefs that develop on the continental shelf, including siliciclastic reefs) and oceanic (i.e., far off the continental shelf, usually on volcanic substratum); whether or not these habitat differences impose community-wide ecological divergence or species exclusion/coexistence with evolutionary consequences, is unknown. Studying Caribbean octocorals as model system, we determined the phylogenetic community structure in a coral reef community, making emphasis on species coexistence evidenced on trait evolution and environmental feedbacks. Forty-nine species represented in five families constituted the species pool from which a phylogenetic tree was reconstructed using mtDNA. We included data from 11 localities in the Western Caribbean (Colombia) including most reef types. To test diversity-environment and phenotype-environment relationships, phylogenetic community structure and trait evolution we carried out comparative analyses implementing ecological and evolutionary approaches. Phylogenetic inferences suggest clustering of oceanic reefs (e.g., atolls) contrasting with phylogenetic overdispersion of continental reefs (e.g., reefs banks). Additionally, atolls and barrier reefs had the highest species diversity (Shannon index) whereas phylogenetic diversity was higher in reef banks. The discriminant component analysis supported this differentiation between oceanic and continental reefs, where continental octocoral species tend to have greater calyx apertures, thicker branches, prominent calyces and azooxanthellate species. This analysis also indicated a clear separation between the slope and the remaining habitats, caused by the presence or absence of Symbiodinium. K statistic analysis showed that this trait is conserved as well as the branch shape. There was strong octocoral community structure with opposite diversity and composition patterns between oceanic and continental reefs. Even habitats with similar depths and overall environmental conditions did not share similar communities between oceanic and continental reefs. This indicates a strong regional influence over the local communities, probably due to water transparency differences between major reef types, i.e., oceanic vs. continental shelf-neritic. This was supported by contrasting patterns found in morphology, composition and evolutionary history of the species between atolls and reef banks.

Impact Of Coral Structures On Wave Directional Spreading Across A Shallow Reef Flat - Lizard Island, Northern Great Barrier Reef

NASA Astrophysics Data System (ADS)

Leon, J. X.; Baldock, T.; Callaghan, D. P.; Hoegh-guldberg, O.; Mumby, P.; Phinn, S. R.; Roelfsema, C. M.; Saunders, M. I.

2013-12-01

Coral reef hydrodynamics operate at several and overlapping spatial-temporal scales. Waves have the most important forcing function on shallow (< 5 m) reefs as they drive most ecological and biogeochemical processes by exerting direct physical stress, directly mixing water (temperature and nutrients) and transporting sediments, nutrients and plankton. Reef flats are very effective at dissipating wave energy and providing an important ecosystem service by protecting highly valued shorelines. The effectiveness of reef flats to dissipate wave energy is related to the extreme hydraulic roughness of the benthos and substrate composition. Hydraulic roughness is usually obtained empirically from frictional-dissipation calculations, as detailed field measurements of bottom roughness (e.g. chain-method or profile gauges) is a very labour and time-consuming task. In this study we measured the impact of coral structures on wave directional spreading. Field data was collected during October 2012 across a reef flat on Lizard Island, northern Great Barrier Reef. Wave surface levels were measured using an array of self-logging pressure sensors. A rapid in situ close-range photogrammetric method was used to create a high-resolution (0.5 cm) image mosaic and digital elevation model. Individual coral heads were extracted from these datasets using geo-morphometric and object-based image analysis techniques. Wave propagation was modelled using a modified version of the SWAN model which includes the measured coral structures in 2m by 1m cells across the reef. The approach followed a cylinder drag approach, neglecting skin friction and inertial components. Testing against field data included bed skin friction. Our results show, for the first time, how the variability of the reef benthos structures affects wave dissipation across a shallow reef flat. This has important implications globally for coral reefs, due to the large extent of their area occupied by reef flats, particularly, as global-scale degradation in coral reef health is causing a lowering of reef carbonate production that might lead to a decrease in reef structure and roughness.

Resilience potential of an Indian Ocean reef: an assessment through coral recruitment pattern and survivability of juvenile corals to recurrent stress events.

PubMed

Manikandan, Balakrishnan; Ravindran, Jeyaraman; Vidya, Pottekkatt Jayabalan; Shrinivasu, Selvaraju; Manimurali, Rajagopal; Paramasivam, Kaliyaperumal

2017-05-01

Coral reefs are degraded by the synergistic action of climate and anthropogenic stressors. Coral cover in the Palk Bay reef at the northern Indian Ocean largely declined in the past decade due to frequent bleaching events, tsunami and increased fishing activities. In this study, we carried out a comparative assessment to assess the differences in the recovery and resilience of three spatially distant reefs viz. Vedhalai, Mandapam and Pamban along Palk Bay affected by moderate, severe and low fishing pressure respectively. The assessment was based on the juvenile coral recruitment pattern and its survivability combined with availability of hard substratum, live coral cover and herbivore reef fish stock. The Vedhalai reef has the highest coral cover (14.6 ± 6.3%), and ≥90% of the live corals in Vedhalai and Mandapam were affected by turf algal overgrowth. The density of herbivore reef fish was low in Vedhalai and Mandapam reefs compared to the Pamban reef with relatively few grazing species. The juvenile coral diversity and density were high in the Pamban reef and low in Vedhalai and Mandapam reefs despite high hard substratum cover. In total, 22 species of juvenile corals of 10 genera were recorded in Palk Bay. Comparison of the species diversity of juvenile corals with adult ones suggested that the Pamban reef is connected with other distant reefs whereas Vedhalai and Mandapam reefs were self-seeded. There was no statistically significant difference in the survivability of juvenile corals between the study sites, and in total, ≥90% of the juvenile corals survived the high sedimentation stress triggered by the northeast monsoon and bleaching stress that occurred recurrently. Our results indicated that the human activities indirectly affected the juvenile coral recruitment by degrading the live coral cover and contributed to the spatial variation in the recovery and resilience of the Palk Bay reef. Low species diversity of the juvenile corals will increase the vulnerability of the Palk Bay reef to species-specific endemic threats.

Octocoral Species Assembly and Coexistence in Caribbean Coral Reefs

PubMed Central

Velásquez, Johanna; Sánchez, Juan A.

2015-01-01

Background What are the determinant factors of community assemblies in the most diverse ecosystem in the ocean? Coral reefs can be divided in continental (i.e., reefs that develop on the continental shelf, including siliciclastic reefs) and oceanic (i.e., far off the continental shelf, usually on volcanic substratum); whether or not these habitat differences impose community-wide ecological divergence or species exclusion/coexistence with evolutionary consequences, is unknown. Methods Studying Caribbean octocorals as model system, we determined the phylogenetic community structure in a coral reef community, making emphasis on species coexistence evidenced on trait evolution and environmental feedbacks. Forty-nine species represented in five families constituted the species pool from which a phylogenetic tree was reconstructed using mtDNA. We included data from 11 localities in the Western Caribbean (Colombia) including most reef types. To test diversity-environment and phenotype-environment relationships, phylogenetic community structure and trait evolution we carried out comparative analyses implementing ecological and evolutionary approaches. Results Phylogenetic inferences suggest clustering of oceanic reefs (e.g., atolls) contrasting with phylogenetic overdispersion of continental reefs (e.g., reefs banks). Additionally, atolls and barrier reefs had the highest species diversity (Shannon index) whereas phylogenetic diversity was higher in reef banks. The discriminant component analysis supported this differentiation between oceanic and continental reefs, where continental octocoral species tend to have greater calyx apertures, thicker branches, prominent calyces and azooxanthellate species. This analysis also indicated a clear separation between the slope and the remaining habitats, caused by the presence or absence of Symbiodinium. K statistic analysis showed that this trait is conserved as well as the branch shape. Discussion There was strong octocoral community structure with opposite diversity and composition patterns between oceanic and continental reefs. Even habitats with similar depths and overall environmental conditions did not share similar communities between oceanic and continental reefs. This indicates a strong regional influence over the local communities, probably due to water transparency differences between major reef types, i.e., oceanic vs. continental shelf-neritic. This was supported by contrasting patterns found in morphology, composition and evolutionary history of the species between atolls and reef banks. PMID:26177191

Marine ecosystem appropriation in the Indo-Pacific: a case study of the live reef fish food trade

NASA Technical Reports Server (NTRS)

Warren-Rhodes, Kimberley; Sadovy, Yvonne; Cesar, Herman

2003-01-01

Our ecological footprint analyses of coral reef fish fisheries and, in particular, the live reef fish food trade (FT), indicate many countries' current consumption exceeds estimated sustainable per capita global, regional and local coral reef production levels. Hong Kong appropriates 25% of SE Asia's annual reef fish production of 135 260-286 560 tonnes (t) through its FT demand, exceeding regional biocapacity by 8.3 times; reef fish fisheries demand out-paces sustainable production in the Indo-Pacific and SE Asia by 2.5 and 6 times. In contrast, most Pacific islands live within their own reef fisheries means with local demand at < 20% of total capacity in Oceania. The FT annually requisitions up to 40% of SE Asia's estimated reef fish and virtually all of its estimated grouper yields. Our results underscore the unsustainable nature of the FT and the urgent need for regional management and conservation of coral reef fisheries in the Indo-Pacific.

Fatty acid profiles of benthic environment associated with artificial reefs in subtropical Hong Kong.

PubMed

Cheung, Siu Gin; Wai, Ho Yin; Shin, Paul K S

2010-02-01

Artificial reefs can enhance habitat heterogeneity, especially in seabed degraded by bottom-dredging and trawling. However, the trophodynamics of such reef systems are not well understood. This study provided baseline data on trophic relationships in the benthic environment associated with artificial reefs in late spring and mid summer of subtropical Hong Kong, using fatty acid profiles as an indicator. Data from sediments collected at the reef base, materials from sediment traps deployed on top and bottom of the reefs, total particulate matter from the water column and oyster tissues from reef surface were subjected to principal component analysis. Results showed variations of fatty acid profiles in the total particulate matter, upper sediment trap and oyster tissue samples collected in the two samplings, indicating seasonal, trophodynamic changes within the reef system. The wastes produced by fish aggregating at the reefs can also contribute a source of biodeposits to the nearby benthic environment. Copyright 2009 Elsevier Ltd. All rights reserved.

Biomimetric sentinel reef structures for optical sensing and communications

NASA Astrophysics Data System (ADS)

Fries, David; Hutcheson, Tim; Josef, Noam; Millie, David; Tate, Connor

2017-05-01

Traditional artificial reef structures are designed with uniform cellular architectures and topologies and do not mimic natural reef forms. Strings and ropes are a proven, common fisheries and mariculture construction element throughout the world and using them as artificial reef scaffolding can enable a diversity of ocean sensing, communications systems including the goal of sentinel reefs. The architecture and packaging of electronics is key to enabling such structures and systems. The distributed sensor reef concept leads toward a demonstrable science-engineering-informed framework for 3D smart habitat designs critical to stock fish development and coastal monitoring and protection. These `nature-inspired' reef infrastructures, can enable novel instrumented `reef observatories' capable of collecting real-time ecosystem data. Embedding lighting and electronic elements into artificial reef systems are the first systems conceptualized. This approach of bringing spatial light to the underwater world for optical sensing, communication and even a new breed of underwater robotic vehicle is an interdisciplinary research activity which integrates principles of electronic packaging, and ocean technology with art/design.

Satellite imaging coral reef resilience at regional scale. A case-study from Saudi Arabia.

PubMed

Rowlands, Gwilym; Purkis, Sam; Riegl, Bernhard; Metsamaa, Liisa; Bruckner, Andrew; Renaud, Philip

2012-06-01

We propose a framework for spatially estimating a proxy for coral reef resilience using remote sensing. Data spanning large areas of coral reef habitat were obtained using the commercial QuickBird satellite, and freely available imagery (NASA, Google Earth). Principles of coral reef ecology, field observation, and remote observations, were combined to devise mapped indices. These capture important and accessible components of coral reef resilience. Indices are divided between factors known to stress corals, and factors incorporating properties of the reef landscape that resist stress or promote coral growth. The first-basis for a remote sensed resilience index (RSRI), an estimate of expected reef resilience, is proposed. Developed for the Red Sea, the framework of our analysis is flexible and with minimal adaptation, could be extended to other reef regions. We aim to stimulate discussion as to use of remote sensing to do more than simply deliver habitat maps of coral reefs. Copyright © 2012 Elsevier Ltd. All rights reserved.

Marine ecosystem appropriation in the Indo-Pacific: a case study of the live reef fish food trade.

PubMed

Warren-Rhodes, Kimberley; Sadovy, Yvonne; Cesar, Herman

2003-11-01

Our ecological footprint analyses of coral reef fish fisheries and, in particular, the live reef fish food trade (FT), indicate many countries' current consumption exceeds estimated sustainable per capita global, regional and local coral reef production levels. Hong Kong appropriates 25% of SE Asia's annual reef fish production of 135 260-286 560 tonnes (t) through its FT demand, exceeding regional biocapacity by 8.3 times; reef fish fisheries demand out-paces sustainable production in the Indo-Pacific and SE Asia by 2.5 and 6 times. In contrast, most Pacific islands live within their own reef fisheries means with local demand at < 20% of total capacity in Oceania. The FT annually requisitions up to 40% of SE Asia's estimated reef fish and virtually all of its estimated grouper yields. Our results underscore the unsustainable nature of the FT and the urgent need for regional management and conservation of coral reef fisheries in the Indo-Pacific.

Upper Miocene reef complex of Mallorca, Balearic Islands, Spain

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pomar, L.

1988-02-01

The late Tortonian-Messinian coral reef platform of south Mallorca onlaps a folded middle late Miocene carbonate platform on which progradation of up to 20 km occurs. Vertical sea cliffs (up to 100 m high) superbly show the last 5 km of this progradation and complement the numerous water-well cores from the island interior. The Mallorca reef presents the most complete facies zonation of the Miocene reefs of the western Mediterranean. The reef wall framework is up to 20 m thick and shows (1) erosional reef flat with reef breccia and small corals; (2) spur-and-grove zone with large, massive corals; (3)more » deep buttresses and pinnacles with terraces of branching corals; and (4) deep reef wall with flat, laminar coral colonies, branching red algae, and Halimeda sands.« less

Virus-host interactions and their roles in coral reef health and disease.

PubMed

Thurber, Rebecca Vega; Payet, Jérôme P; Thurber, Andrew R; Correa, Adrienne M S

2017-04-01

Coral reefs occur in nutrient-poor shallow waters, constitute biodiversity and productivity hotspots, and are threatened by anthropogenic disturbance. This Review provides an introduction to coral reef virology and emphasizes the links between viruses, coral mortality and reef ecosystem decline. We describe the distinctive benthic-associated and water-column- associated viromes that are unique to coral reefs, which have received less attention than viruses in open-ocean systems. We hypothesize that viruses of bacteria and eukaryotes dynamically interact with their hosts in the water column and with scleractinian (stony) corals to influence microbial community dynamics, coral bleaching and disease, and reef biogeochemical cycling. Last, we outline how marine viruses are an integral part of the reef system and suggest that the influence of viruses on reef function is an essential component of these globally important environments.

Gauging state-level and user group views of oyster reef restoration activities in the northern Gulf of Mexico

USGS Publications Warehouse

LaPeyre, Megan K.; Nix, Ashby; Laborde, Luke; Piazza, Bryan P.

2012-01-01

Successful oyster reef restoration, like many conservation challenges, requires not only biological understanding of the resource, but also stakeholder cooperation and political support. To measure perceptions of oyster reef restoration activities and priorities for future restoration along the northern Gulf of Mexico coast, a survey of 1500 individuals representing 4 user groups (oyster harvesters, shrimpers, environmental organization members, professionals), across 5 states (Texas, Louisiana, Mississippi, Alabama, Florida) was conducted in 2011. All respondents highly supported reef restoration efforts, but there was a dichotomy in preferred restoration goals with commercial fishermen more likely to support oyster reef restoration for stock enhancement, while professionals and environmental organization members were more likely to support oyster reef restoration to enhance ecosystem services. All user groups identified enforcement, funding, and appropriate site selection as basic requirements for successful reef restoration. For management of restored oyster reefs, oyster harvesters and shrimpers were less likely to support options that restricted the use of reefs, including gear restrictions and permanent closures, but did support rotating annual reef closures, while other stakeholders were willing to consider all options, including annual reef closures and sanctuary reefs. Overall, there were clear differences in management and communication preferences across user groups, but few differences across states. Understanding these key differences in stakeholder support for, and willingness to accept specific management actions is critical in moving management and restoration forward while minimizing conflict.

Carbonate Production by Benthic Communities on Shallow Coralgal Reefs of Abrolhos Bank, Brazil.

PubMed

Reis, Vanessa Moura Dos; Karez, Cláudia Santiago; Mariath, Rodrigo; de Moraes, Fernando Coreixas; de Carvalho, Rodrigo Tomazetto; Brasileiro, Poliana Silva; Bahia, Ricardo da Gama; Lotufo, Tito Monteiro da Cruz; Ramalho, Laís Vieira; de Moura, Rodrigo Leão; Francini-Filho, Ronaldo Bastos; Pereira-Filho, Guilherme Henrique; Thompson, Fabiano Lopes; Bastos, Alex Cardoso; Salgado, Leonardo Tavares; Amado-Filho, Gilberto Menezes

2016-01-01

The abundance of reef builders, non-builders and the calcium carbonate produced by communities established in Calcification Accretion Units (CAUs) were determined in three Abrolhos Bank shallow reefs during the period from 2012 to 2014. In addition, the seawater temperature, the irradiance, and the amount and composition of the sediments were determined. The inner and outer reef arcs were compared. CAUs located on the inner reef shelf were under the influence of terrigenous sediments. On the outer reefs, the sediments were composed primarily of marine biogenic carbonates. The mean carbonate production in shallow reefs of Abrolhos was 579 ± 98 g m-2 y-1. The builder community was dominated by crustose coralline algae, while the non-builder community was dominated by turf. A marine heat wave was detected during the summer of 2013-2014, and the number of consecutive days with a temperature above or below the summer mean was positively correlated with the turf cover increase. The mean carbonate production of the shallow reefs of Abrolhos Bank was greater than the estimated carbonate production measured for artificial structures on several other shallow reefs of the world. The calcimass was higher than the non-calcareous mass, suggesting that the Abrolhos reefs are still in a positive carbonate production balance. Given that marine heat waves produce an increase of turf cover on the shallow reefs of the Abrolhos, a decrease in the cover represented by reef builders and shifting carbonate production are expected in the near future.

Black reefs: iron-induced phase shifts on coral reefs.

PubMed

Kelly, Linda Wegley; Barott, Katie L; Dinsdale, Elizabeth; Friedlander, Alan M; Nosrat, Bahador; Obura, David; Sala, Enric; Sandin, Stuart A; Smith, Jennifer E; Vermeij, Mark J A; Williams, Gareth J; Willner, Dana; Rohwer, Forest

2012-03-01

The Line Islands are calcium carbonate coral reef platforms located in iron-poor regions of the central Pacific. Natural terrestrial run-off of iron is non-existent and aerial deposition is extremely low. However, a number of ship groundings have occurred on these atolls. The reefs surrounding the shipwreck debris are characterized by high benthic cover of turf algae, macroalgae, cyanobacterial mats and corallimorphs, as well as particulate-laden, cloudy water. These sites also have very low coral and crustose coralline algal cover and are call black reefs because of the dark-colored benthic community and reduced clarity of the overlying water column. Here we use a combination of benthic surveys, chemistry, metagenomics and microcosms to investigate if and how shipwrecks initiate and maintain black reefs. Comparative surveys show that the live coral cover was reduced from 40 to 60% to <10% on black reefs on Millennium, Tabuaeran and Kingman. These three sites are relatively large (>0.75 km(2)). The phase shift occurs rapidly; the Kingman black reef formed within 3 years of the ship grounding. Iron concentrations in algae tissue from the Millennium black reef site were six times higher than in algae collected from reference sites. Metagenomic sequencing of the Millennium Atoll black reef-associated microbial community was enriched in iron-associated virulence genes and known pathogens. Microcosm experiments showed that corals were killed by black reef rubble through microbial activity. Together these results demonstrate that shipwrecks and their associated iron pose significant threats to coral reefs in iron-limited regions.

Carbonate Production by Benthic Communities on Shallow Coralgal Reefs of Abrolhos Bank, Brazil

PubMed Central

dos Reis, Vanessa Moura; Karez, Cláudia Santiago; Mariath, Rodrigo; de Moraes, Fernando Coreixas; de Carvalho, Rodrigo Tomazetto; Brasileiro, Poliana Silva; Bahia, Ricardo da Gama; Lotufo, Tito Monteiro da Cruz; Ramalho, Laís Vieira; de Moura, Rodrigo Leão; Francini-Filho, Ronaldo Bastos; Pereira-Filho, Guilherme Henrique; Thompson, Fabiano Lopes; Bastos, Alex Cardoso; Salgado, Leonardo Tavares; Amado-Filho, Gilberto Menezes

2016-01-01

The abundance of reef builders, non-builders and the calcium carbonate produced by communities established in Calcification Accretion Units (CAUs) were determined in three Abrolhos Bank shallow reefs during the period from 2012 to 2014. In addition, the seawater temperature, the irradiance, and the amount and composition of the sediments were determined. The inner and outer reef arcs were compared. CAUs located on the inner reef shelf were under the influence of terrigenous sediments. On the outer reefs, the sediments were composed primarily of marine biogenic carbonates. The mean carbonate production in shallow reefs of Abrolhos was 579 ± 98 g m-2 y-1. The builder community was dominated by crustose coralline algae, while the non-builder community was dominated by turf. A marine heat wave was detected during the summer of 2013–2014, and the number of consecutive days with a temperature above or below the summer mean was positively correlated with the turf cover increase. The mean carbonate production of the shallow reefs of Abrolhos Bank was greater than the estimated carbonate production measured for artificial structures on several other shallow reefs of the world. The calcimass was higher than the non-calcareous mass, suggesting that the Abrolhos reefs are still in a positive carbonate production balance. Given that marine heat waves produce an increase of turf cover on the shallow reefs of the Abrolhos, a decrease in the cover represented by reef builders and shifting carbonate production are expected in the near future. PMID:27119151

The temporal bones from Sima de los Huesos Middle Pleistocene site (Sierra de Atapuerca, Spain). A phylogenetic approach.

PubMed

Martínez, I; Arsuaga, J L

1997-01-01

Three well-preserved crania and 22 temporal bones were recovered from the Sima de los Huesos Middle Pleistocene site up to and including the 1994 field season. This is the largest sample of hominid temporal bones known from a single Middle Pleistocene site and it offers the chance to characterize the temporal bone morphology of an European Middle Pleistocene population and to study the phylogenetic relationships of the SH sample with other Upper and Middle Pleistocene hominids. We have carried out a cladistic analysis based on nine traits commonly used in phylogenetic analysis of Middle and Late Pleistocene hominids: shape of the temporal squama superior border, articular eminence morphology, contribution of the sphenoid bone to the median glenoid wall, postglenoid process projection, tympanic plate orientation, presence of the styloid process, mastoid process projection, digastric groove morphology and anterior mastoid tubercle. We have found two autapomorphies on the Home erectus temporal bone: strong reduction of the postglenoid process and absence of the styloid process. Modern humans, Neandertals and the Middle Pleistocene fossils from Europe and Africa constitute a clade characterized by a convex superior border of the temporal squama. The European Middle Pleistocene fossils from Sima de los Huesos, Petralona, Steinheim, Bilzingsleben and Castel di Guido share a Neandertal apomorphy: a relatively flat articular eminence. The fossils from Ehringsdorf, La Chaise Suardi and Biache-Saint-Vaast also display another Neandertal derived trait: an anteriorly obliterated digastric groove. Modern humans and the African Middle Pleistocene fossils share a synapomorphy: a sagittally orientated tympanic plate.

Comparison of remote video and diver's direct observations to quantify reef fishes feeding on benthos in coral and rocky reefs.

PubMed

Longo, G O; Floeter, S R

2012-10-01

This study compared remote underwater video and traditional direct diver observations to assess reef fish feeding impact on benthos across multiple functional groups within different trophic categories (e.g. herbivores, zoobenthivores and omnivores) and in two distinct reef systems: a subtropical rocky reef and a tropical coral reef. The two techniques were roughly equivalent, both detecting the species with higher feeding impact and recording similar bite rates, suggesting that reef fish feeding behaviour at the study areas are not strongly affected by the diver's presence. © 2012 The Authors. Journal of Fish Biology © 2012 The Fisheries Society of the British Isles.

76 FR 78245 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Gulf of Mexico Reef Fish Fishery...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-12-16

... Coral and Coral Reefs FMPs (Generic ACL Amendment) for purposes of review by the Secretary under the... the Caribbean, Gulf of Mexico, and South Atlantic; Gulf of Mexico Reef Fish Fishery; South Atlantic... the FMP for Reef Fish Resources of the Gulf of Mexico (Reef Fish FMP). DATES: This action is effective...

Oyster Reef Communities in the Chesapeake Bay. Virginia Institute of Marine Science Educational Series. [CD-ROM].

ERIC Educational Resources Information Center

Harding, Juliana M.; Mann, Roger; Clark, Vicki P.

This CD-ROM, Oyster Reef Communities in the Chesapeake Bay, describes oyster reefs, reef communities, and their roles in the Chesapeake Bay ecosystem. Detailed descriptions of scientific research methods and techniques used to monitor and describe oyster reef communities as well as applications of the resulting data are provided. The CD-ROM was…

76 FR 82413 - Amendments to the Reef Fish, Spiny Lobster, Queen Conch and Coral and Reef Associated Plants and...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-12-30

... and Reef Associated Plants and Invertebrates Fishery Management Plans of Puerto Rico and the U.S... Lobster, Queen Conch and Coral and Reef Associated Plants and Invertebrates Fishery Management Plans of... the FMP for Corals and Reef Associated Plants and Invertebrates of Puerto Rico and the U.S. Virgin...

43 CFR Appendix II to Part 11 - Format for Data Inputs and Modifications to the NRDAM/CME

Code of Federal Regulations, 2010 CFR

2010-10-01

... of water that does not contain vegetation (e.g., wetland, seagrass, or kelp) or invertebrate reef (e... kelp) or invertebrate reef (e.g., coral reef) and is classified as “seaward” in Table 6.2, Volume I of..., seagrass, or kelp) or invertebrate reef (e.g., coral reef). Tidal current—currents caused by alternating...

Relationships between structural complexity, coral traits, and reef fish assemblages

NASA Astrophysics Data System (ADS)

Darling, Emily S.; Graham, Nicholas A. J.; Januchowski-Hartley, Fraser A.; Nash, Kirsty L.; Pratchett, Morgan S.; Wilson, Shaun K.

2017-06-01

With the ongoing loss of coral cover and the associated flattening of reef architecture, understanding the links between coral habitat and reef fishes is of critical importance. Here, we investigate whether considering coral traits and functional diversity provides new insights into the relationship between structural complexity and reef fish communities, and whether coral traits and community composition can predict structural complexity. Across 157 sites in Seychelles, Maldives, the Chagos Archipelago, and Australia's Great Barrier Reef, we find that structural complexity and reef zone are the strongest and most consistent predictors of reef fish abundance, biomass, species richness, and trophic structure. However, coral traits, diversity, and life histories provided additional predictive power for models of reef fish assemblages, and were key drivers of structural complexity. Our findings highlight that reef complexity relies on living corals—with different traits and life histories—continuing to build carbonate skeletons, and that these nuanced relationships between coral assemblages and habitat complexity can affect the structure of reef fish assemblages. Seascape-level estimates of structural complexity are rapid and cost effective with important implications for the structure and function of fish assemblages, and should be incorporated into monitoring programs.

Effects of oyster harvest activities on Louisiana reef habitat and resident nekton communities

USGS Publications Warehouse

Beck, Steve; LaPeyre, Megan K.

2015-01-01

Oysters are often cited as “ecosystem engineers” because they modify their environment. Coastal Louisiana contains extensive oyster reef areas that have been harvested for decades, and whether differences in habitat functions exist between those areas and nonharvested reefs is unclear. We compared reef physical structure and resident community metrics between these 2 subtidal reef types. Harvested reefs were more fragmented and had lower densities of live eastern oysters (Crassostrea virginica) and hooked mussels (Ischadium recurvum) than the nonharvested reefs. Stable isotope values (13C and 15N) of dominant nekton species and basal food sources were used to compare food web characteristics. Nonpelagic source contributions and trophic positions of dominant species were slightly elevated at harvested sites. Oyster harvesting appeared to have decreased the number of large oysters and to have increased the percentage of reefs that were nonliving by decreasing water column filtration and benthopelagic coupling. The differences in reef matrix composition, however, had little effect on resident nekton communities. Understanding the thresholds of reef habitat areas, the oyster density or oyster size distribution below which ecosystem services may be compromised, remains key to sustainable management.

The ecology of intertidal oyster reefs of the South Atlantic Coast: A community profile

USGS Publications Warehouse

Bahr, Leonard M.; Lanier, William P.

1981-01-01

The functional role of the intertidal oyster reef community in the southeastern Atlantic coastal zone is described. This description is based on a compilation of published data, as well as some unpublished information presented as hypotheses. The profile is organized in a hierarchical manner, such that relevant details of reef oyster biology (autecology) are presented, followed by a description of the reef community level of organization. Then the reef community is described as a subsystem of the coastal marsh-ecosystem (synecoloqy). This information is also synthesized in a series of nested conceptual models of oyster reefs at the regional level, the drainage basin level, and the individual reef level. The final chapter includes a summary overview and a section on management implications and guidelines. Intertidal oyster reefs are relatively persistent features of the salt marsh estuarine ecosystem in the southeastern Atlantic coastal zone. The average areal extent of the oyster reef subsystem in this larger ecosystem is relatively small (about 0.05%). This proportion does not reflect, however, the functional importance of the reef subsystem in stablizing the marsh, providing food for estuarine consumers, mineralizing organic matter, and providing firm substrates in this otherwise soft environment.

The role of the reef-dune system in coastal protection in Puerto Morelos (Mexico)

NASA Astrophysics Data System (ADS)

Franklin, Gemma L.; Torres-Freyermuth, Alec; Medellin, Gabriela; Allende-Arandia, María Eugenia; Appendini, Christian M.

2018-04-01

Reefs and sand dunes are critical morphological features providing natural coastal protection. Reefs dissipate around 90 % of the incident wave energy through wave breaking, whereas sand dunes provide the final natural barrier against coastal flooding. The storm impact on coastal areas with these features depends on the relative elevation of the extreme water levels with respect to the sand dune morphology. However, despite the importance of barrier reefs and dunes in coastal protection, poor management practices have degraded these ecosystems, increasing their vulnerability to coastal flooding. The present study aims to theoretically investigate the role of the reef-dune system in coastal protection under current climatic conditions at Puerto Morelos, located in the Mexican Caribbean Sea, using a widely validated nonlinear non-hydrostatic numerical model (SWASH). Wave hindcast information, tidal level, and a measured beach profile of the reef-dune system in Puerto Morelos are employed to estimate extreme runup and the storm impact scale for current and theoretical scenarios. The numerical results show the importance of including the storm surge when predicting extreme water levels and also show that ecosystem degradation has important implications for coastal protection against storms with return periods of less than 10 years. The latter highlights the importance of conservation of the system as a mitigation measure to decrease coastal vulnerability and infrastructure losses in coastal areas in the short to medium term. Furthermore, the results are used to evaluate the applicability of runup parameterisations for beaches to reef environments. Numerical analysis of runup dynamics suggests that runup parameterisations for reef environments can be improved by including the fore reef slope. Therefore, future research to develop runup parameterisations incorporating reef geometry features (e.g. reef crest elevation, reef lagoon width, fore reef slope) is warranted.

Dissolved inorganic carbon and total alkalinity of a Hawaiian fringing reef: chemical techniques for monitoring the effects of ocean acidification on coral reefs

NASA Astrophysics Data System (ADS)

Lantz, C. A.; Atkinson, M. J.; Winn, C. W.; Kahng, S. E.

2014-03-01

There is an interest in developing approaches to "ecosystem-based" management for coral reefs. One aspect of ecosystem performance is to monitor carbon metabolism of whole communities. In an effort to explore robust techniques to monitor the metabolism of fringing reefs, especially considering the possible effects of ocean acidification, a yearlong study of the carbonate chemistry of a nearshore fringing reef in Hawaii was conducted. Diurnal changes in seawater carbonate chemistry were measured once a week in an algal-dominated and a coral-dominated reef flat on the Waimanalo fringing reef, Hawaii, from April of 2010 until May of 2011. Calculated rates of gross primary production (GPP) and net community calcification ( G) were similar to previous estimates of community metabolism for other coral reefs (GPP 971 mmol C m-2 d-1; G 186 mmol CaCO3 m-2 d-1) and indicated that this reef was balanced in terms of organic metabolism, exhibited net calcification, and was a net source of CO2 to the atmosphere. Average slopes of total alkalinity versus dissolved inorganic carbon (TA-DIC slope) for the coral-dominated reef flat exhibited a greater calcification-to-net photosynthesis ratio than for the algal-dominated reef flat (coral slope vs. algal slope). Over the course of the time series, TA-DIC slopes remained significantly different between sites and were not correlated with diurnal averages in reef-water residence time or solar irradiance. These characteristic slopes for each reef flat reflect the relationship between carbon and carbonate community metabolism and can be used as a tool to monitor ecosystem function in response to ocean acidification.

Swell-generated Set-up and Infragravity Wave Propagation Over a Fringing Coral Reef: Implications for Wave-driven Inundation of Atoll Islands

NASA Astrophysics Data System (ADS)

Cheriton, O. M.; Storlazzi, C. D.; Rosenberger, K. J.; Quataert, E.; van Dongeren, A.

2014-12-01

The Republic of the Marshall Islands is comprised of 1156 islands on 29 low-lying atolls with a mean elevation of 2 m that are susceptible to sea-level rise and often subjected to overwash during large wave events. A 6-month deployment of wave and tide gauges across two shore-normal sections of north-facing coral reef on the Roi-Namur Island on Kwajalein Atoll was conducted during 2013-2014 to quantify wave dynamics and wave-driven water levels on the fringing coral reef. Wave heights and periods on the reef flat were strongly correlated to the water levels. On the fore reef, the majority of wave energy was concentrated in the incident band (5-25 s); due to breaking at the reef crest, however, the wave energy over the reef flat was dominated by infragravity-band (25-250 s) motions. Two large wave events with heights of 6-8 m at 15 s over the fore reef were observed. During these events, infragravity-band wave heights exceeded the incident band wave heights and approximately 1.0 m of set-up was established over the innermost reef flat. This set-up enabled the propagation of large waves across the reef flat, reaching maximum heights of nearly 2 m on the innermost reef flat adjacent to the toe of the beach. XBEACH models of the instrument transects were able to replicate the incident waves, infragravity waves, and wave-driven set-up across the reef when the hydrodynamic roughness of the reef was correctly parameterized. These events led to more than 3 m of wave-driven run-up and inundation of the island that drove substantial morphological change to the beach face.

Modeling Reef Island Morphodynamics in Profile and Plan View

NASA Astrophysics Data System (ADS)

Ashton, A. D.; Ortiz, A. C.; Lorenzo-Trueba, J.

2016-12-01

Reef islands are carbonate detrital landforms perched atop shallow reef flats of atolls and barrier reef systems. Often comprising the only subaerial, inhabitable land of many island chains and island nations, these low-lying, geomorphically active landforms face considerable hazards from climate change. While there hazards include wave overtopping and groundwater salinization, sea-level rise and wave climate change will affect sediment transport and shoreline dynamics, including the possibility for wholesale reorganization of the islands themselves. Here we present a simplified morphodynamic model that can spatially quantify the potential impacts of climate change on reef islands. Using parameterizations of sediment transport pathways and feedbacks from previously presented XBeach modeling results, we investigate how sea-level rise, change in storminess, and different carbonate production rates can affect the profile evolution of reef islands, including feedbacks with the shallow reef flat that bounds the islands offshore (and lagoonward). Model results demonstrate that during rising sea levels, the reef flat can serve as a sediment trap, starving reef islands of detrital sediment that could otherwise fortify the shore against sea-level-rise-driven erosion. On the other hand, if reef flats are currently shallow (likely due to geologic inheritance or biologic cementation processes) such that sea-level rise does not result in sediment accumulation on the flat, reef island shorelines may be more resilient to rising seas. We extend the model in plan view to examine how long-term (decadal) changes in wave approach direction could affect reef island shoreline orientation. We compare model results to historical and geologic change for different case studies on the Marshall Islands. This simplified modeling approach, focusing on boundary dynamics and mass fluxes, provides a quantitative tool to predict the response of reef island environments to climate change.

Digital Reef Rugosity Estimates Coral Reef Habitat Complexity

PubMed Central

Dustan, Phillip; Doherty, Orla; Pardede, Shinta

2013-01-01

Ecological habitats with greater structural complexity contain more species due to increased niche diversity. This is especially apparent on coral reefs where individual coral colonies aggregate to give a reef its morphology, species zonation, and three dimensionality. Structural complexity is classically measured with a reef rugosity index, which is the ratio of a straight line transect to the distance a flexible chain of equal length travels when draped over the reef substrate; yet, other techniques from visual categories to remote sensing have been used to characterize structural complexity at scales from microhabitats to reefscapes. Reef-scale methods either lack quantitative precision or are too time consuming to be routinely practical, while remotely sensed indices are mismatched to the finer scale morphology of coral colonies and reef habitats. In this communication a new digital technique, Digital Reef Rugosity (DRR) is described which utilizes a self-contained water level gauge enabling a diver to quickly and accurately characterize rugosity with non-invasive millimeter scale measurements of coral reef surface height at decimeter intervals along meter scale transects. The precise measurements require very little post-processing and are easily imported into a spreadsheet for statistical analyses and modeling. To assess its applicability we investigated the relationship between DRR and fish community structure at four coral reef sites on Menjangan Island off the northwest corner of Bali, Indonesia and one on mainland Bali to the west of Menjangan Island; our findings show a positive relationship between DRR and fish diversity. Since structural complexity drives key ecological processes on coral reefs, we consider that DRR may become a useful quantitative community-level descriptor to characterize reef complexity. PMID:23437380

Digital reef rugosity estimates coral reef habitat complexity.

PubMed

Dustan, Phillip; Doherty, Orla; Pardede, Shinta

2013-01-01

Ecological habitats with greater structural complexity contain more species due to increased niche diversity. This is especially apparent on coral reefs where individual coral colonies aggregate to give a reef its morphology, species zonation, and three dimensionality. Structural complexity is classically measured with a reef rugosity index, which is the ratio of a straight line transect to the distance a flexible chain of equal length travels when draped over the reef substrate; yet, other techniques from visual categories to remote sensing have been used to characterize structural complexity at scales from microhabitats to reefscapes. Reef-scale methods either lack quantitative precision or are too time consuming to be routinely practical, while remotely sensed indices are mismatched to the finer scale morphology of coral colonies and reef habitats. In this communication a new digital technique, Digital Reef Rugosity (DRR) is described which utilizes a self-contained water level gauge enabling a diver to quickly and accurately characterize rugosity with non-invasive millimeter scale measurements of coral reef surface height at decimeter intervals along meter scale transects. The precise measurements require very little post-processing and are easily imported into a spreadsheet for statistical analyses and modeling. To assess its applicability we investigated the relationship between DRR and fish community structure at four coral reef sites on Menjangan Island off the northwest corner of Bali, Indonesia and one on mainland Bali to the west of Menjangan Island; our findings show a positive relationship between DRR and fish diversity. Since structural complexity drives key ecological processes on coral reefs, we consider that DRR may become a useful quantitative community-level descriptor to characterize reef complexity.

The southernmost record of a large erethizontid rodent (Hystricomorpha: Erethizontoidea) in the Pleistocene of South America: Biogeographic and paleoenvironmental implications

NASA Astrophysics Data System (ADS)

Vezzosi, Raúl I.; Kerber, Leonardo

2018-03-01

The South American porcupines (Erethizontidae) are included in two genera: Chaetomys and Coendou. The latter is a very speciose taxon, with about 13 living species. During at least the late Pliocene-early Pleistocene, erethizontids immigrated to Central and North America during the Great American Biotic Interchange. Although some Pleistocene fossils have been reported, the Quaternary history of this clade is still understudied. The only known extinct species is Coendou magnus. In this work, a fossil of a porcupine is reported from an Upper Pleistocene fluvial sedimentary sequence cropping out in the Northern Pampa geomorphological region, Santa Fe Province, Argentina. Despite this group having different living forms widely distributed in South American Neotropical woodland habitats, the Pleistocene occurrences of Erethizontidae are scarce and limited to Upper Pleistocene deposits from Bolivia, Brazil, and Uruguay. Currently, the specimen here reported represents the only Pleistocene porcupine from Argentina with a stratigraphical context. The morphological characters as well as the dimensions indicate that it is close to the Pleistocene erethizontid Coendou magnus. In this context, the presence of this erethizontid in such a southern locality, together with other taxa recorded from this site and the associated geological and paleoenvironmental evidence, indicates subtropical conditions, compared with the current conditions, which may have allowed a southern displacement of taxa more related to woodlands and xeric subtropical environments.

The ecology, behaviour and physiology of fishes on coral reef flats, and the potential impacts of climate change.

PubMed

Harborne, A R

2013-09-01

Reef flats, typically a low-relief carbonate and sand habitat in shallow water leeward of the reef crest, are one of the most extensive zones on Pacific coral reefs. This shallow zone often supports an abundant and diverse fish assemblage that is exposed to more significant variations in physical factors, such as water depth and movement, temperature and ultraviolet (UV) radiation levels, than most other reef fishes. This review examines the characteristics of reef flat fish assemblages, and then investigates what is known about how they respond to their biophysical environment. Because of the challenges of living in shallow, wave-exposed water, reef flats typically support a distinct fish assemblage compared to other reef habitats. This assemblage clearly changes across tidal cycles as some larger species migrate to deeper water at low tide and other species modify their behaviour, but quantitative data are generally lacking. At least some reef flat fish species are well-adapted to high temperatures, low oxygen concentrations and high levels of UV radiation. These behavioural and physiological adaptations suggest that there may be differences in the demographic processes between reef flat assemblages and those in deeper water. Indeed, there is some evidence that reef flats may act as nurseries for some species, but more research is required. Further studies are also required to predict the effects of climate change, which is likely to have multifaceted impacts on reef flats by increasing temperature, water motion and sediment load. Sea-level rise may also affect reef flat fish assemblages and food webs by increasing the amount of time that larger species are able to forage in this zone. The lack of data on reef flats is surprising given their size and relative ease of access, and a better understanding of their functional role within tropical marine seascapes is urgently required. © 2013 The Fisheries Society of the British Isles.

Algal Turf Sediments and Sediment Production by Parrotfishes across the Continental Shelf of the Northern Great Barrier Reef

PubMed Central

Goatley, Christopher H. R.; Bellwood, David R.

2017-01-01

Sediments are found in the epilithic algal matrix (EAM) of all coral reefs and play important roles in ecological processes. Although we have some understanding of patterns of EAM sediments across individual reefs, our knowledge of patterns across broader spatial scales is limited. We used an underwater vacuum sampler to quantify patterns in two of the most ecologically relevant factors of EAM sediments across the Great Barrier Reef: total load and grain size distribution. We compare these patterns with rates of sediment production and reworking by parrotfishes to gain insights into the potential contribution of parrotfishes to EAM sediments. Inner-shelf reef EAMs had the highest sediment loads with a mean of 864.1 g m-2, compared to 126.8 g m-2 and 287.4 g m-2 on mid- and outer-shelf reefs, respectively. High sediment loads were expected on inner-shelf reefs due to their proximity to the mainland, however, terrigenous siliceous sediments only accounted for 13–24% of total mass. On inner-shelf reef crests parrotfishes would take three months to produce the equivalent mass of sediment found in the EAM. On the outer-shelf it would take just three days, suggesting that inner-shelf EAMs are characterised by low rates of sediment turnover. By contrast, on-reef sediment production by parrotfishes is high on outer-shelf crests. However, exposure to oceanic swells means that much of this production is likely to be lost. Hydrodynamic activity also appears to structure sediment patterns at within-reef scales, with coarser sediments (> 250 μm) typifying exposed reef crest EAMs, and finer sediments (< 250 μm) typifying sheltered back-reef EAMs. As both the load and grain size of EAM sediments mediate a number of important ecological processes on coral reefs, the observed sediment gradients are likely to play a key role in the structure and function of the associated coral reef communities. PMID:28122042

Preliminary numerical simulation for shallow strata stability of coral reef in South China Sea

NASA Astrophysics Data System (ADS)

Tang, Qinqin; Zhan, Wenhuan; Zhang, Jinchang

2017-04-01

Coral reefs are the geologic material and special rock and soil, which live in shallow water of the tropic ocean and are formed through biological and geological action. Since infrastructure construction is being increasingly developed on coral reefs during recent years, it is necessary to evaluate the shallow strata stability of coral reefs in the South China Sea. The paper is to study the borehole profiles for shallow strata of coral reefs in the South China Sea, especially in the hydrodynamic marine environment?, and to establish a geological model for numerical simulation with Geo-Studio software. Five drilling holes show a six-layer shallow structure of South China Sea, including filling layer, mid-coarse sand, coral sand gravel, fine sand, limestone debris and reef limestone. The shallow coral reef profile next to lagoon is similar to "layers cake", in which the right side close to the sea is analogous to "block cake". The simulation results show that coral reef stability depends on wave loads and earthquake strength, as well as the physical properties of coral reefs themselves. The safety factor of the outer reef is greater than 10.0 in the static condition, indicating that outer reefs are less affected by the wave and earthquake. However, the safety factor next to lagoon is ranging from 0.1 to 4.9. The main reason for the variations that the strata of coral reefs close to the sea are thick. For example, the thickness of reef limestone is more than 10 m and equivalent to the block. When the thickness of inside strata is less than 10 m, they show weak engineering geological characteristics. These findings can provide useful information for coral reef constructions in future. This work was funded by National Basic Research Program of China (contract: 2013CB956104) and National Natural Science Foundation of China (contract: 41376063).

Baseline Assessment of Mesophotic Reefs of the Vitória-Trindade Seamount Chain Based on Water Quality, Microbial Diversity, Benthic Cover and Fish Biomass Data

PubMed Central

Meirelles, Pedro M.; Amado-Filho, Gilberto M.; Pereira-Filho, Guilherme H.; Pinheiro, Hudson T.; de Moura, Rodrigo L.; Joyeux, Jean-Christophe; Mazzei, Eric F.; Bastos, Alex C.; Edwards, Robert A.; Dinsdale, Elizabeth; Paranhos, Rodolfo; Santos, Eidy O.; Iida, Tetsuya; Gotoh, Kazuyoshi; Nakamura, Shota; Sawabe, Tomoo; Rezende, Carlos E.; Gadelha, Luiz M. R.; Francini-Filho, Ronaldo B.; Thompson, Cristiane; Thompson, Fabiano L.

2015-01-01

Seamounts are considered important sources of biodiversity and minerals. However, their biodiversity and health status are not well understood; therefore, potential conservation problems are unknown. The mesophotic reefs of the Vitória-Trindade Seamount Chain (VTC) were investigated via benthic community and fish surveys, metagenomic and water chemistry analyses, and water microbial abundance estimations. The VTC is a mosaic of reef systems and includes fleshy algae dominated rhodolith beds, crustose coralline algae (CCA) reefs, and turf algae dominated rocky reefs of varying health levels. Macro-carnivores and larger fish presented higher biomass at the CCA reefs (4.4 kg per frame) than in the rhodolith beds and rocky reefs (0.0 to 0.1 kg per frame). A larger number of metagenomic sequences identified as primary producers (e.g., Chlorophyta and Streptophyta) were found at the CCA reefs. However, the rocky reefs contained more diseased corals (>90%) than the CCA reefs (~40%) and rhodolith beds (~10%). Metagenomic analyses indicated a heterotrophic and fast-growing microbiome in rocky reef corals that may possibly lead to unhealthy conditions possibly enhanced by environmental features (e.g. light stress and high loads of labile dissolved organic carbon). VTC mounts represent important hotspots of biodiversity that deserve further conservation actions. PMID:26090804

Norwegian deep-water coral reefs: cultivation and molecular analysis of planktonic microbial communities.

PubMed

Jensen, Sigmund; Lynch, Michael D J; Ray, Jessica L; Neufeld, Josh D; Hovland, Martin

2015-10-01

Deep-sea coral reefs do not receive sunlight and depend on plankton. Little is known about the plankton composition at such reefs, even though they constitute habitats for many invertebrates and fish. We investigated plankton communities from three reefs at 260-350 m depth at hydrocarbon fields off the mid-Norwegian coast using a combination of cultivation and small subunit (SSU) rRNA gene and transcript sequencing. Eight months incubations of a reef water sample with minimal medium, supplemented with carbon dioxide and gaseous alkanes at in situ-like conditions, enabled isolation of mostly Alphaproteobacteria (Sulfitobacter, Loktanella), Gammaproteobacteria (Colwellia) and Flavobacteria (Polaribacter). The relative abundance of isolates in the original sample ranged from ∼ 0.01% to 0.80%. Comparisons of bacterial SSU sequences from filtered plankton of reef and non-reef control samples indicated high abundance and metabolic activity of primarily Alphaproteobacteria (SAR11 Ia), Gammaproteobacteria (ARCTIC96BD-19), but also of Deltaproteobacteria (Nitrospina, SAR324). Eukaryote SSU sequences indicated metabolically active microalgae and animals, including codfish, at the reef sites. The plankton community composition varied between reefs and differed between DNA and RNA assessments. Over 5000 operational taxonomic units were detected, some indicators of reef sites (e.g. Flavobacteria, Cercozoa, Demospongiae) and some more active at reef sites (e.g. Gammaproteobacteria, Ciliophora, Copepoda). © 2014 Society for Applied Microbiology and John Wiley & Sons Ltd.

Lower permian reef-bank bodies’ characterization in the pre-caspian basin

NASA Astrophysics Data System (ADS)

Wang, Zhen; Wang, Yankun; Yin, Jiquan; Luo, Man; Liang, Shuang

2018-02-01

Reef-bank reservoir is one of the targets for exploration of marine carbonate rocks in the Pre-Caspian Basin. Within this basin, the reef-bank bodies were primarily developed in the subsalt Devonian-Lower Permian formations, and are dominated by carbonate platform interior and margin reef-banks. The Lower Permian reef-bank present in the eastern part of the basin is considered prospective. This article provides a sequence and sedimentary facies study utilizing drilling and other data, as well as an analysis and identification of the Lower Permian reef-bank features along the eastern margin of the Pre-Caspian Basin using sub-volume coherence and seismic inversion techniques. The results indicate that the sub-volume coherence technique gives a better reflection of lateral distribution of reefs, and the seismic inversion impedance enables the identification of reef bodies’ development phases in the vertical direction, since AI (impedance) is petrophysically considered a tool for distinguishing the reef limestone and the clastic rocks within the formation (limestone exhibits a relatively high impedance than clastic rock). With this method, the existence of multiple phases of the Lower Permian reef-bank bodies along the eastern margin of the Pre-Caspian Basin has been confirmed. These reef-bank bodies are considered good subsalt exploration targets due to their lateral connectivity from south to north, large distribution range and large scale.

Pattern and intensity of human impact on coral reefs depend on depth along the reef profile and on the descriptor adopted

NASA Astrophysics Data System (ADS)

Nepote, Ettore; Bianchi, Carlo Nike; Chiantore, Mariachiara; Morri, Carla; Montefalcone, Monica

2016-09-01

Coral reefs are threatened by multiple global and local disturbances. The Maldives, already heavily hit by the 1998 mass bleaching event, are currently affected also by growing tourism and coastal development that may add to global impacts. Most of the studies investigating effects of local disturbances on coral reefs assessed the response of communities along a horizontal distance from the impact source. This study investigated the status of a Maldivian coral reef around an island where an international touristic airport has been recently (2009-2011) built, at different depths along the reef profile (5-20 m depth) and considering the change in the percentage of cover of five different non-taxonomic descriptors assessed through underwater visual surveys: hard corals, soft corals, other invertebrates, macroalgae and abiotic attributes. Eight reefs in areas not affected by any coastal development were used as controls and showed a reduction of hard coral cover and an increase of abiotic attributes (i.e. sand, rock, coral rubble) at the impacted reef. However, hard coral cover, the most widely used descriptor of coral reef health, was not sufficient on its own to detect subtle indirect effects that occurred down the reef profile. Selecting an array of descriptors and considering different depths, where corals may find a refuge from climate impacts, could guide the efforts of minimising local human pressures on coral reefs.

Ecological intereactions of reef building corals

EPA Science Inventory

Coral reefs are very important marine ecosystems because they support tremendous biodiversity and reefs are critical economic resources many coastal nations. Tropical reef structures are largely built by stony corals. This presentation provides background on basic coral biology t...

Ecological impacts and management implications of reef walking on a tropical reef flat community.

PubMed

Williamson, Jane E; Byrnes, Evan E; Clark, Jennalee A; Connolly, David M; Schiller, Sabine E; Thompson, Jessica A; Tosetto, Louise; Martinelli, Julieta C; Raoult, Vincent

2017-01-30

Continued growth of tourism has led to concerns about direct and indirect impacts on the ecology of coral reefs and ultimate sustainability of these environments under such pressure. This research assessed impacts of reef walking by tourists on a relatively pristine reef flat community associated with an 'ecoresort' on the Great Barrier Reef, Australia. Heavily walked areas had lower abundances of live hard coral but greater amounts of dead coral and sediment. Abundances of macroalgae were not affected between sites. Coral-associated butterflyfish were less abundant and less diverse in more trampled sites. A manipulative experiment showed handling holothurians on reef walks had lasting negative impacts. This is the first study to show potential impacts of such handling on holothurians. Ecological impacts of reef walking are weighed against sociocultural benefits of a first hand experience in nature. Copyright © 2016 Elsevier Ltd. All rights reserved.

Lithifying Microbes Associated to Coral Rubbles

NASA Astrophysics Data System (ADS)

Beltran, Y.

2015-12-01

Microbial communities taking part in calcium carbonate lithification processes are particularly relevant to coral reef formation in as much as this lithification allows the stabilization of secondary reef structure. This second framework promotes long-term permanence of the reef, favoring the establishment of macro-reef builders, including corals. The reef-bacterial crusts formed by microbial communities are composed of magnesium calcite. Although prokaryotes are not proper calcifiers, carbonate precipitation can be induced by their metabolic activity and EPS production. Coral reefs are rapidly declining due to several variables associated to environmental change. Specifically in the Caribbean, stony coral Acropora palmata have suffered damage due to diseases, bleaching and storms. Some reports show that in highly disturbed areas wide ridges of reef rubbles are formed by biological and physical lithification. In this study we explore microbial diversity associated to lithified rubbles left after the great decline of reef-building A. palmata.

Coral reefs promote the evolution of morphological diversity and ecological novelty in labrid fishes.

PubMed

Price, S A; Holzman, R; Near, T J; Wainwright, P C

2011-05-01

Although coral reefs are renowned biodiversity hotspots it is not known whether they also promote the evolution of exceptional ecomorphological diversity. We investigated this question by analysing a large functional morphological dataset of trophic characters within Labridae, a highly diverse group of fishes. Using an analysis that accounts for species relationships, the time available for diversification and model uncertainty we show that coral reef species have evolved functional morphological diversity twice as fast as non-reef species. In addition, coral reef species occupy 68.6% more trophic morphospace than non-reef species. Our results suggest that coral reef habitats promote the evolution of both trophic novelty and morphological diversity within fishes. Thus, the preservation of coral reefs is necessary, not only to safeguard current biological diversity but also to conserve the underlying mechanisms that can produce functional diversity in future. © 2011 Blackwell Publishing Ltd/CNRS.

COLLABORATIVE GUIDE: A REEF MANAGER'S GUIDE TO ...

EPA Pesticide Factsheets

Innovative strategies to conserve the world's coral reefs are included in a new guide released today by NOAA, and the Australian Great Barrier Reef Marine Park Authority, with author contributions from a variety of international partners from government agencies, non-governmental organizations, and academic institutions. Referred to as A Reef Manager's Guide to Coral Bleaching, the guide will provide coral reef managers with the latest scientific information on the causes of coral bleaching and new management strategies for responding to this significant threat to coral reef ecosystems. Innovative strategies to conserve the world's coral reefs are included in a new guide released today by NOAA, and the Australian Great Barrier Reef Marine Park Authority, with author contributions from a variety of international partners from government agencies, non-governmental organizations, and academic institutions. Dr. Jordan West, of the National Center for Environmental Assessment, was a major contributor to the guide. Referred to as

Cryptic Coral Reef Diversity Across the Pacific Assessed using Autonomous Reef Monitoring Structures and Multi-omic Methods

NASA Astrophysics Data System (ADS)

Ransome, E. J.; Timmers, M.; Hartmann, A.; Collins, A.; Meyer, C.

2016-02-01

Coral reefs harbor diverse and distinct eukaryotic, bacterial and viral communities, which are critically important for their success. The lack of standardized measures for comprehensively assessing reef diversity has been a major obstacle in understanding the complexity of eukaryotic and microbial associations, and the processes that drive ecosystem shifts on reefs. ARMS, which mimic the structural complexity of the reef using artificial settlement plates, were used to systematically measure reef biodiversity across the Indo-Pacific. This device allows for standardized sampling of reef microbes to metazoans, providing the opportunity to investigate the fundamental links between these groups at an ecosystem level. We integrate the use of traditional ecology methods with metagenomics and metabolomics (metabolic predictors) to quantify the taxonomic composition of one of the planet's most diverse ecosystems and to assess the fundamental links between these cryptic communities and ecosystem function along geographical and anthropogenic stress gradients.

Rising sea levels will reduce extreme temperature variations in tide-dominated reef habitats.

PubMed

Lowe, Ryan Joseph; Pivan, Xavier; Falter, James; Symonds, Graham; Gruber, Renee

2016-08-01

Temperatures within shallow reefs often differ substantially from those in the surrounding ocean; therefore, predicting future patterns of thermal stresses and bleaching at the scale of reefs depends on accurately predicting reef heat budgets. We present a new framework for quantifying how tidal and solar heating cycles interact with reef morphology to control diurnal temperature extremes within shallow, tidally forced reefs. Using data from northwestern Australia, we construct a heat budget model to investigate how frequency differences between the dominant lunar semidiurnal tide and diurnal solar cycle drive ~15-day modulations in diurnal temperature extremes. The model is extended to show how reefs with tidal amplitudes comparable to their depth, relative to mean sea level, tend to experience the largest temperature extremes globally. As a consequence, we reveal how even a modest sea level rise can substantially reduce temperature extremes within tide-dominated reefs, thereby partially offsetting the local effects of future ocean warming.

Reefing Line Tension in CPAS Main Parachute Clusters

NASA Technical Reports Server (NTRS)

Ray, Eric S.

2013-01-01

Reefing lines are an essential feature to manage inflation loads. During each Engineering Development Unit (EDU) test of the Capsule Parachute Assembly System (CPAS), a chase aircraft is staged to be level with the cluster of Main ringsail parachutes during the initial inflation and reefed stages. This allows for capturing high-quality still photographs of the reefed skirt, suspension line, and canopy geometry. The over-inflation angles are synchronized with measured loads data in order to compute the tension force in the reefing line. The traditional reefing tension equation assumes radial symmetry, but cluster effects cause the reefed skirt of each parachute to elongate to a more elliptical shape. This effect was considered in evaluating multiple parachutes to estimate the semi-major and semi-minor axes. Three flight tests are assessed, including one with a skipped first stage, which had peak reefing line tension over three times higher than the nominal parachute disreef sequence.

Reef ecology. Chemically mediated behavior of recruiting corals and fishes: a tipping point that may limit reef recovery.

PubMed

Dixson, Danielle L; Abrego, David; Hay, Mark E

2014-08-22

Coral reefs are in global decline, converting from dominance by coral to dominance by seaweed. Once seaweeds become abundant, coral recovery is suppressed unless herbivores return to remove seaweeds, and corals then recruit. Variance in the recovery of fishes and corals is not well understood. We show that juveniles of both corals and fishes are repelled by chemical cues from fished, seaweed-dominated reefs but attracted to cues from coral-dominated areas where fishing is prohibited. Chemical cues of specific seaweeds from degraded reefs repulsed recruits, and cues from specific corals that are typical of healthy reefs attracted recruits. Juveniles were present at but behaviorally avoided recruiting to degraded reefs dominated by seaweeds. For recovery, degraded reefs may need to be managed to produce cues that attract, rather than repel, recruiting corals and fishes. Copyright © 2014, American Association for the Advancement of Science.

Spatial distribution of epibenthic molluscs on a sandstone reef in the Northeast of Brazil.

PubMed

Martinez, A S; Mendes, L F; Leite, T S

2012-05-01

The present study investigated the distribution and abundance of epibenthic molluscs and their feeding habits associated to substrate features (coverage and rugosity) in a sandstone reef system in the Northeast of Brazil. Rugosity, low coral cover and high coverage of zoanthids and fleshy alga were the variables that influenced a low richness and high abundance of a few molluscan species in the reef habitat. The most abundant species were generalist carnivores, probably associated to a lesser offer and variability of resources in this type of reef system, when compared to the coral reefs. The results found in this study could reflect a normal characteristic of the molluscan community distribution in sandstone reefs, with low coral cover, or could indicate a degradation state of this habitat if it is compared to coral reefs, once that the significantly high coverage of fleshy alga has been recognized as a negative indicator of reef ecosystems health.

43 CFR Appendix II to Part 11 - Format for Data Inputs and Modifications to the NRDAM/CME

Code of Federal Regulations, 2013 CFR

2013-10-01

....g., coral reef) and is classified as “landward” in Table 6.2, Volume I of the NRDAM/CME technical... kelp) or invertebrate reef (e.g., coral reef) and is classified as “seaward” in Table 6.2, Volume I of..., seagrass, or kelp) or invertebrate reef (e.g., coral reef). Tidal current—currents caused by alternating...

43 CFR Appendix II to Part 11 - Format for Data Inputs and Modifications to the NRDAM/CME

Code of Federal Regulations, 2014 CFR

2014-10-01

....g., coral reef) and is classified as “landward” in Table 6.2, Volume I of the NRDAM/CME technical... kelp) or invertebrate reef (e.g., coral reef) and is classified as “seaward” in Table 6.2, Volume I of..., seagrass, or kelp) or invertebrate reef (e.g., coral reef). Tidal current—currents caused by alternating...

77 FR 56168 - Reef Fish Fishery of the Gulf of Mexico; Gulf of Mexico Individual Fishing Quota Programs

Federal Register 2010, 2011, 2012, 2013, 2014

2012-09-12

.... 090206140-91081-03] RIN 0648-XC227 Reef Fish Fishery of the Gulf of Mexico; Gulf of Mexico Individual... red snapper and grouper/tilefish components of the reef fish fishery in the Gulf of Mexico (Gulf), the... INFORMATION: The reef fish fishery of the Gulf of Mexico is managed under the Fishery Management Plan for Reef...

43 CFR Appendix II to Part 11 - Format for Data Inputs and Modifications to the NRDAM/CME

Code of Federal Regulations, 2011 CFR

2011-10-01

....g., coral reef) and is classified as “landward” in Table 6.2, Volume I of the NRDAM/CME technical... kelp) or invertebrate reef (e.g., coral reef) and is classified as “seaward” in Table 6.2, Volume I of..., seagrass, or kelp) or invertebrate reef (e.g., coral reef). Tidal current—currents caused by alternating...

Contrasting movements and connectivity of reef-associated sharks using acoustic telemetry: implications for management.

PubMed

Espinoza, Mario; Lédée, Elodie J I; Simpfendorfer, Colin A; Tobin, Andrew J; Heupel, Michelle R

2015-12-01

Understanding the efficacy of marine protected areas (MPAs) for wide-ranging predators is essential to designing effective management and conservation approaches. The use of acoustic monitoring and network analysis can improve our understanding of the spatial ecology and functional connectivity of reef-associated species, providing a useful approach for reef-based conservation planning. This study compared and contrasted the movement and connectivity of sharks with different degrees of reef association. We examined the residency, dispersal, degree of reef connectivity, and MPA use of grey reef (Carcharhinus amblyrhynchos), silvertip (C. albimarginatus), and bull (C. leucas) sharks monitored in the central Great Barrier Reef (GBR). An array of 56 acoustic receivers was used to monitor shark movements on 17 semi-isolated reefs. Carcharhinus amblyrhynchos and C. albimarginatus were detected most days at or near their tagging reef. However, while C. amblyrhynchos spent 80% of monitoring days in the array, C. albimarginatus was only detected 50% of the time. Despite both species moving similar distances (< 50 km), a large portion of the population of C. albimarginatus (71%) was detected on multiple reefs and moved more frequently between reefs and management zones than C. amblyrhynchos. Carcharhinus leucas was detected less than 20% of the time within the tagging array, and 42% of the population undertook long-range migrations to other arrays in the GBR. Networks derived for C. leucas were larger and more complex than those for C. amblyrhynchos and C. albimarginatus. Our findings suggest that protecting specific reefs based on prior knowledge (e.g., healthier reefs with high fish biomass) and increasing the level of protection to include nearby, closely spaced reef habitats (< 20 km) may perform better for species like C. albimarginatus than having either a single or a network of isolated MPAs. This design would also provide protection for larger male C. amblyrhynchos, which tend to disperse more and use larger areas than females. For wide-ranging sharks like C. leucas, a combination of spatial planning and other alternative measures is critical. Our findings demonstrate that acoustic monitoring can serve as a useful platform for designing more effective MPA networks for reef predators displaying a range of movement patterns.

Please mind the gap - Visual census and cryptic biodiversity assessment at central Red Sea coral reefs.

PubMed

Pearman, John K; Anlauf, Holger; Irigoien, Xabier; Carvalho, Susana

2016-07-01

Coral reefs harbor the most diverse assemblages in the ocean, however, a large proportion of the diversity is cryptic and, therefore, undetected by standard visual census techniques. Cryptic and exposed communities differ considerably in species composition and ecological function. This study compares three different coral reef assessment protocols: i) visual benthic reef surveys: ii) visual census of Autonomous Reef Monitoring Structures (ARMS) plates; and iii) metabarcoding techniques of the ARMS (including sessile, 106-500 μm and 500-2000 μm size fractions), that target the cryptic and exposed communities of three reefs in the central Red Sea. Visual census showed a dominance of Cnidaria (Anthozoa) and Rhodophyta on the reef substrate, while Porifera, Bryozoa and Rhodophyta were the most abundant groups on the ARMS plates. Metabarcoding, targeting the 18S rRNA gene, significantly increased estimates of the species diversity (p < 0.001); revealing that Annelida were generally the dominant phyla (in terms of reads) of all fractions and reefs. Furthermore, metabarcoding detected microbial eukaryotic groups such as Syndiniophyceae, Mamiellophyceae and Bacillariophyceae as relevant components of the sessile fraction. ANOSIM analysis showed that the three reef sites showed no differences based on the visual census data. Metabarcoding showed a higher sensitivity for identifying differences between reef communities at smaller geographic scales than standard visual census techniques as significant differences in the assemblages were observed amongst the reefs. Comparison of the techniques showed no similar patterns for the visual techniques while the metabarcoding of the ARMS showed similar patterns amongst fractions. Establishing ARMS as a standard tool in reef monitoring will not only advance our understanding of local processes and ecological community response to environmental changes, as different faunal components will provide complementary information but also improve the estimates of biodiversity in coral reef benthic communities. This study lays the foundations for further studies looking at integrating traditional reef survey methodologies with complementary approaches, such as metabarcoding, which investigate other components of the reef community. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Saller, A.H.; Schlanger, S.O.

Two wells drilled along the margin of Enewetak Atoll penetrated approximately 1000 m of upper Eocene, Oligocene, and lower Miocene carbonates. Strontium isotope stratigraphy indicates relatively continuous deposition of carbonate from 40 Ma to 20 Ma. Depositional environments show a gradual basinward progradation of facies with slope carbonates passing upward into fore-reef, reef, back-reef, and lagoonal carbonates. Slope strata contain wackestones and packstones with submarine-cemented lithoclasts, coral, coralline algae fragments, benthic rotaline forams, planktonic forams, and echinoderm fragments. Fore-reef strata are dominantly packstones and boundstones containing large pieces of coral, abundant benthic forams, coralline algae fragments, stromatoporoids( ), and minormore » planktonic forams. Reef and near-reef sediments include coralgal boundstones and grainstones with abundant benthic forams. Halimeda and miliolid forams are common in lagoonward parts of the back reef. Sponge borings, geopetal structures, and fractures are common in reef and fore-reef strata. Lagoonal strata are wackestones and packstones with common mollusks, coral, coralline algae, and benthic forams (rotaline and miliolid). Diagenesis has extensively altered strata near the atoll margin. Aragonite dissolution and calcite cements (radiaxial and cloudy prismatic) are abundant in fore-reef, reef, and some back-reef strata. Petrographic and geochemical data indicate aragonite dissolution and calcite cementation in seawater at burial depths of 100 to 300 m. Dolomite occurs in slope and deeply buried reefal carbonates. Most dolomitization occurred at burial depths of more than 1000 m in cool marine waters circulating through the atoll. lagoonal strata are not significantly altered by marine diagenesis and still contain abundant primary aragonite and magnesium calcite.« less

Black reefs: iron-induced phase shifts on coral reefs

PubMed Central

Kelly, Linda Wegley; Barott, Katie L; Dinsdale, Elizabeth; Friedlander, Alan M; Nosrat, Bahador; Obura, David; Sala, Enric; Sandin, Stuart A; Smith, Jennifer E; Vermeij, Mark J A; Williams, Gareth J; Willner, Dana; Rohwer, Forest

2012-01-01

The Line Islands are calcium carbonate coral reef platforms located in iron-poor regions of the central Pacific. Natural terrestrial run-off of iron is non-existent and aerial deposition is extremely low. However, a number of ship groundings have occurred on these atolls. The reefs surrounding the shipwreck debris are characterized by high benthic cover of turf algae, macroalgae, cyanobacterial mats and corallimorphs, as well as particulate-laden, cloudy water. These sites also have very low coral and crustose coralline algal cover and are call black reefs because of the dark-colored benthic community and reduced clarity of the overlying water column. Here we use a combination of benthic surveys, chemistry, metagenomics and microcosms to investigate if and how shipwrecks initiate and maintain black reefs. Comparative surveys show that the live coral cover was reduced from 40 to 60% to <10% on black reefs on Millennium, Tabuaeran and Kingman. These three sites are relatively large (>0.75 km2). The phase shift occurs rapidly; the Kingman black reef formed within 3 years of the ship grounding. Iron concentrations in algae tissue from the Millennium black reef site were six times higher than in algae collected from reference sites. Metagenomic sequencing of the Millennium Atoll black reef-associated microbial community was enriched in iron-associated virulence genes and known pathogens. Microcosm experiments showed that corals were killed by black reef rubble through microbial activity. Together these results demonstrate that shipwrecks and their associated iron pose significant threats to coral reefs in iron-limited regions. PMID:21881615

Retrograde accretion of a Caribbean fringing reef controlled by hurricanes and sea-level rise

NASA Astrophysics Data System (ADS)

Blanchon, Paul; Richards, Simon; Bernal, Juan Pablo; Cerdeira-Estrada, Sergio; Ibarra, M. Socrates; Corona-Martínez, Liliana; Martell-Dubois, Raúl

2017-10-01

Predicting the impact of sea-level (SL) rise on coral reefs requires reliable models of reef accretion. Most assume that accretion results from vertical growth of coralgal framework, but recent studies show that reefs exposed to hurricanes consist of layers of coral gravel rather than in-place corals. New models are therefore needed to account for hurricane impact on reef accretion over geological timescales. To investigate this geological impact, we report the configuration and development of a 4-km-long fringing reef at Punta Maroma along the northeast Yucatan Peninsula. Satellite-derived bathymetry shows the crest is set-back a uniform distance of 315 ±15 m from a mid-shelf slope break, and the reef-front decreases 50% in width and depth along its length. A 12-core drill transect constrained by multiple 230Th ages shows the reef is composed of an 2-m thick layer of coral clasts that has retrograded 100 m over its back-reef during the last 5.5 ka. These findings are consistent with a hurricane-control model of reef development where large waves trip and break over the mid-shelf slope break, triggering rapid energy dissipation and thus limiting how far upslope individual waves can fragment corals and redistribute clasts. As SL rises and water depth increases, energy dissipation during wave-breaking is reduced, extending the clast-transport limit, thus leading to reef retrogradation. This hurricane model may be applicable to a large sub-set of fringing reefs in the tropical Western-Atlantic necessitating a reappraisal of their accretion rates and response to future SL rise.

Assessing shoreline exposure and oyster habitat suitability maximizes potential success for sustainable shoreline protection using restored oyster reefs

USGS Publications Warehouse

LaPeyre, Megan K.; Serra, Kayla; Joyner, T. Andrew; Humphries, Austin T.

2015-01-01

Oyster reefs provide valuable ecosystem services that contribute to coastal resilience. Unfortunately, many reefs have been degraded or removed completely, and there are increased efforts to restore oysters in many coastal areas. In particular, much attention has recently been given to the restoration of shellfish reefs along eroding shorelines to reduce erosion. Such fringing reef approaches, however, often lack empirical data to identify locations where reefs are most effective in reducing marsh erosion, or fully take into account habitat suitability. Using monitoring data from 5 separate fringing reef projects across coastal Louisiana, we quantify shoreline exposure (fetch + wind direction + wind speed) and reef impacts on shoreline retreat. Our results indicate that fringing oyster reefs have a higher impact on shoreline retreat at higher exposure shorelines. At higher exposures, fringing reefs reduced marsh edge erosion an average of 1.0 m y−1. Using these data, we identify ranges of shoreline exposure values where oyster reefs are most effective at reducing marsh edge erosion and apply this knowledge to a case study within one Louisiana estuary. In Breton Sound estuary, we calculate shoreline exposure at 500 random points and then overlay a habitat suitability index for oysters. This method and the resulting visualization show areas most likely to support sustainable oyster populations as well as significantly reduce shoreline erosion. Our results demonstrate how site selection criteria, which include shoreline exposure and habitat suitability, are critical to ensuring greater positive impacts and longevity of oyster reef restoration projects.

Pleistocene phylogeographic effects on avian populations and the speciation process.

PubMed Central

Avise, J C; Walker, D

1998-01-01

Pleistocene biogeographic events have traditionally been ascribed a major role in promoting speciations and in sculpting the present-day diversity and distributions of vertebrate taxa. However, this paradigm has recently come under challenge from a review of interspecific mtDNA genetic distances in birds: most sister-species separations dated to the Pliocene. Here we summarize the literature on intraspecific mtDNA phylogeographic patterns in birds and reinterpret the molecular evidence bearing on Pleistocene influences. At least 37 of the 63 avian species surveyed (59%) are sundered into recognizable phylogeographic units, and 28 of these separations (76%) trace to the Pleistocene. Furthermore, use of phylogroup separation times within species as minimum estimates of 'speciation durations' also indicates that many protracted speciations, considered individually, probably extended through time from Pliocene origins to Pleistocene completions. When avian speciation is viewed properly as an extended temporal process rather than as a point event, Pleistocene conditions appear to have played an active role both in initiating major phylogeographic separations within species, and in completing speciations that had been inaugurated earlier. Whether the Pleistocene was exceptional in these regards compared with other geological times remains to be determined. PMID:9569664

Pleistocene megafaunal interaction networks became more vulnerable after human arrival.

PubMed

Pires, Mathias M; Koch, Paul L; Fariña, Richard A; de Aguiar, Marcus A M; dos Reis, Sérgio F; Guimarães, Paulo R

2015-09-07

The end of the Pleistocene was marked by the extinction of almost all large land mammals worldwide except in Africa. Although the debate on Pleistocene extinctions has focused on the roles of climate change and humans, the impact of perturbations depends on properties of ecological communities, such as species composition and the organization of ecological interactions. Here, we combined palaeoecological and ecological data, food-web models and community stability analysis to investigate if differences between Pleistocene and modern mammalian assemblages help us understand why the megafauna died out in the Americas while persisting in Africa. We show Pleistocene and modern assemblages share similar network topology, but differences in richness and body size distributions made Pleistocene communities significantly more vulnerable to the effects of human arrival. The structural changes promoted by humans in Pleistocene networks would have increased the likelihood of unstable dynamics, which may favour extinction cascades in communities facing extrinsic perturbations. Our findings suggest that the basic aspects of the organization of ecological communities may have played an important role in major extinction events in the past. Knowledge of community-level properties and their consequences to dynamics may be critical to understand past and future extinctions. © 2015 The Author(s).

Pleistocene megafaunal interaction networks became more vulnerable after human arrival

PubMed Central

Pires, Mathias M.; Koch, Paul L.; Fariña, Richard A.; de Aguiar, Marcus A. M.; dos Reis, Sérgio F.; Guimarães, Paulo R.

2015-01-01

The end of the Pleistocene was marked by the extinction of almost all large land mammals worldwide except in Africa. Although the debate on Pleistocene extinctions has focused on the roles of climate change and humans, the impact of perturbations depends on properties of ecological communities, such as species composition and the organization of ecological interactions. Here, we combined palaeoecological and ecological data, food-web models and community stability analysis to investigate if differences between Pleistocene and modern mammalian assemblages help us understand why the megafauna died out in the Americas while persisting in Africa. We show Pleistocene and modern assemblages share similar network topology, but differences in richness and body size distributions made Pleistocene communities significantly more vulnerable to the effects of human arrival. The structural changes promoted by humans in Pleistocene networks would have increased the likelihood of unstable dynamics, which may favour extinction cascades in communities facing extrinsic perturbations. Our findings suggest that the basic aspects of the organization of ecological communities may have played an important role in major extinction events in the past. Knowledge of community-level properties and their consequences to dynamics may be critical to understand past and future extinctions. PMID:26336175

Eddy covariance measurement of the spatial heterogeneity of surface energy exchanges over Heron Reef, Great Barrier Reef, Australia

NASA Astrophysics Data System (ADS)

MacKellar, M.; McGowan, H. A.; Phinn, S. R.

2011-12-01

Coral reefs cover 2.8 to 6.0 x 105 km2 of the Earth's surface and are warm, shallow regions that are believed to contribute enhanced sensible and latent heat to the atmosphere, relative to the surrounding ocean. To predict the impact of climate variability on coral reefs and their weather and climate including cloud, winds, rainfall patterns and cyclone genesis, accurate parameterisation of air-sea energy exchanges over coral reefs is essential. This is also important for the parameterisation and validation of regional to global scale forecast models to improve prediction of tropical and sub-tropical marine and coastal weather. Eddy covariance measurements of air-sea fluxes over coral reefs are rare due to the complexities of installing instrumentation over shallow, tidal water. Consequently, measurements of radiation and turbulent flux data for coral reefs have been captured remotely (satellite data) or via single measurement sites downwind of coral reefs (e.g. terrestrial or shipboard instrumentation). The resolution of such measurements and those that have been made at single locations on reefs may not capture the spatial heterogeneity of surface-atmosphere energy exchanges due to the different geomorphic and biological zones on coral reefs. Accordingly, the heterogeneity of coral reefs with regard to substrate, benthic communities and hydrodynamic processes are not considered in the characterization of the surface radiation energy flux transfers across the water-atmosphere interface. In this paper we present a unique dataset of concurrent in situ eddy covariance measurements made on instrumented pontoons of the surface energy balance over different geomorphic zones of a coral reef (shallow reef flat, shallow and deep lagoons). Significant differences in radiation transfers and air-sea turbulent flux exchanges over the reef were highlighted, with higher Bowen ratios over the shallow reef flat. Increasing wind speed was shown to increase flux divergence between sites to the extent that under unstable, south-easterly Trade Winds the net flux of heat was positive and negative over different geomorphic zones. The surface drag coefficient ranged from 1 to 2.5 x 10-3, with no significant difference between sites. Results highlight the spatial variation of air-sea energetics across a lagoonal platform reef in response to local meteorology, hydrodynamics and benthic/substrate cover.

Soft coral abundance on the central Great Barrier Reef: effects of Acanthaster planci, space availability, and aspects of the physical environment

NASA Astrophysics Data System (ADS)

Fabricius, K. E.

1997-07-01

The distribution and abundance of soft coral genera on reefs of the central Great Barrier Reef was investigated in relation to reef position, recent history of disturbance, wave exposure, substratum slope and depth. Eighty-five 25 m long transects were surveyed at 10 m depth on windward sides of 14 mid- and outer-shelf reefs. A further 75 transects in different zones on one mid-shelf reef (Davies Reef) between 5 and 30 m depth were investigated. The crown-of-thorns starfish Acanthaster planci had caused large-scale mortality of scleractinians on eight of these reefs five to ten years prior to the study, and as a result, scleractinian cover was only 35-55% of that on the six unimpacted reefs. On the impacted reefs, stony corals with massive and encrusting growths form had smaller average colony diameters but similar or slightly lower numerical abundance. In contrast, mean colony size, cover and abundance of branching stony corals showed no difference between impacted and unimpacted reefs. Twenty-four genera of soft corals (in eight families) were recorded, and none showed different abundance or cover in areas of former A. planci impact, compared to unaffected sites. Similarly, no difference was detected among locations in the numbers or area cover of sponges, tunicates, zoanthids, Halimeda or other macro-algae. Mean soft coral cover was 2 to 5% at 10 m on sheltered mid-shelf reefs, and 12 to 17% on more current-exposed reefs. Highest cover and abundances generally occurred on platforms of outer-shelf reefs exposed to relatively strong currents but low wave energy. On Davies Reef, cover and colony numbers of the families Nephtheidae and Xeniidae were low within the zone of wave impact, in flow-protected bays and lagoons, on shaded steep slopes, and at depths above 10 and below 25 m. In contrast, distributions of genera of the family Alcyoniidae were not related to these physical parameters. The physical conditions of a large proportion of habitats appear "sub-optimal" for the fastest growing taxa, possibly preventing an invasion of the cleared space. Thus, in the absence of additional stress these shallow-water fore-reef zones appear sufficiently resilient to return to their pre-outbreak state of scleractinian dominance.

Oyster reefs can outpace sea-level rise

NASA Astrophysics Data System (ADS)

Rodriguez, Antonio B.; Fodrie, F. Joel; Ridge, Justin T.; Lindquist, Niels L.; Theuerkauf, Ethan J.; Coleman, Sara E.; Grabowski, Jonathan H.; Brodeur, Michelle C.; Gittman, Rachel K.; Keller, Danielle A.; Kenworthy, Matthew D.

2014-06-01

In the high-salinity seaward portions of estuaries, oysters seek refuge from predation, competition and disease in intertidal areas, but this sanctuary will be lost if vertical reef accretion cannot keep pace with sea-level rise (SLR). Oyster-reef abundance has already declined ~85% globally over the past 100 years, mainly from over harvesting, making any additional losses due to SLR cause for concern. Before any assessment of reef response to accelerated SLR can be made, direct measures of reef growth are necessary. Here, we present direct measurements of intertidal oyster-reef growth from cores and terrestrial lidar-derived digital elevation models. On the basis of our measurements collected within a mid-Atlantic estuary over a 15-year period, we developed a globally testable empirical model of intertidal oyster-reef accretion. We show that previous estimates of vertical reef growth, based on radiocarbon dates and bathymetric maps, may be greater than one order of magnitude too slow. The intertidal reefs we studied should be able to keep up with any future accelerated rate of SLR (ref. ) and may even benefit from the additional subaqueous space allowing extended vertical accretion.

Coastal Erosion in a Coral Reef Island, Taiping Island, South China Sea

NASA Astrophysics Data System (ADS)

Su, S.; Ma, G.; Liang, M.; Chu, J.

2011-12-01

Reef flats surrounding islands are known to dissipate much offshore wave energy, and thereby protect beaches from erosion. Taiping Island, the largest coral reef islands of the Spratly Islands in the South China Sea, has been observed the shorelines erosion on the southwest coast over past decades. It is recognized that wave and current processes across coral reefs affect reef-island development and morphology. A number of studies suggest effects of climate changes, sea-level rise and storm-intensity increase, determine the magnitude of wave energy on the reef platform and will likely intensify the erosion. The topographical change in the local region, the southwest reef flat was dredged a channel for navigation, may be a significant factor in influencing current characteristics. Numerical modeling is used to describe both hydrodynamics and sediment dynamics because there are no field measurements available around the reef flat. Field observations off the island conducted in August 2004 and November 2005 provides offshore wave characteristics of the predominant wind seasons. Numerical simulations perform the spatial and temporal variation of waves and current patterns and coastal erosion potential on the reef platform.

Geology and ground-water resources of the island of Niihau, Hawaii

USGS Publications Warehouse

Stearns, Harold T.; Macdonald, Gordon A.

1947-01-01

Niihau lies 171/2 miles southwest of Kauai. Its area is 72 square miles, and its highest point has an altitude of 1,281 feet. The population is about 180, chiefly Hawaiians. The annual rainfall at Kiekie, the ranch headquarters, generally ranges between 18 and 26 inches. The chief industries are the raising of sheep and cattle and production of honey. The island is privately owned.The main mass of the island is composed of a deeply weathered remnant of a basalt dome of Tertiary age, cut by a dike complex trending NE-SW. These Tertiary rocks are herein named the Paniau volcanic series. The central vent lay about 2 miles out to sea to the east of the present island. The dome, after deep gulches were cut into it by stream erosion and it was cliffed all around by the sea, was partly submerged. During Pleistocene time a broad wave-cut platform on the north, west, and south sides was built above sea level and widened by the eruption of lavas and tuffs, from 9 vents now visible and other vents now buried, to form a low coastal plain. These Pleistocene volcanic rocks are named the Kiekie volcanic series. Ash from Lehua Island, a Pleistocene tuff cone, has been drifted into duties on the north end of Niihau. Lithified dunes that extend below sea level, and the small outcrops of emerged fossiliferous limestone above sea level, indicate the plus 100-foot, minus 60-foot, plus 25-foot, and plus 5-foot eustatic stands of the sea correlative with changes in the volume of the polar ice caps and concurrent changes in the configuration of ocean basins.Calcareous dune and beach deposits, short stretches of nullipore reef and beach rock, and playa and alluvial deposits constitute the Recent rocks.No perennial streams exist on the island but about a dozen playa lakes, fresh or brackish during rainy weather, lie on the plain. The domestic water supply is rain caught from roofs. Only three wells on the island yield water with less than 25 grains of salt per gallon (260 parts per million of chloride). Typically, water holes for stock are about 15 feet across, 5 feet deep, and 8 feet wide. They have been dug in the lowlands where the depth to water is usually less than 5 feet. Forty-six dug wells and water holes exist, the water of some of which has become too salty for stock. Two or three deep wells were drilled 500 to 1,000 feet below sea level, but they encountered salty water. Three wells, not yet used, have been excavated in the Tertiary basalts. One of them has an infiltration tunnel at the bottom. Two seeps perched on vitric tuff beds more than 500 feet above sea level carry large quantities of salt leached from spray that falls on their recharge areas. Several sites are recommended for developing additional water for stock. The island, however, will always be short of domestic water because of aridity, unfavorable geologic structures, continuous deposition of salt spray, and abundant authigenic salts in the lake beds.Among the lavas of the Paniau volcanic series, of Tertiary age, olivine basalts probably predominate but ordinary basalts are abundant. Picrite-basalt of the primitive type, containing abundant olivine phenocrysts, also occurs. Andesites are probably present but are rare. Most of the lavas of the Kiekie volcanic series, of Pleistocene age, are olivine basalt, but one is transitional between olivine basalt and picrite-basalt. In many of the Pleistocene lavas the late-crystallized augite is titanian. A single occurrence of melilite-nepheline basalt has been reported. Chemical analyses of five rocks are listed.

Coral reef ecosystem decline: changing dynamics of coral reef carbonate production and implications for reef growth potential

NASA Astrophysics Data System (ADS)

Perry, Chris

2016-04-01

Global-scale deteriorations in coral reef health have caused major shifts in species composition and are likely to be exacerbated by climate change. It has been suggested that one effect of these ecological changes will be to lower reef carbonate production rates, which will impair reef growth potential and, ultimately, may lead to states of net reef erosion. However, quantitative data to support such assertions are limited, and linkages between the ecological state of coral reefs and their past and present geomorphic performance (in other words their growth potential) are poorly resolved. Using recently collected data from sites in the Caribbean and Indian Ocean, and which have undergone very different post-disturbance ecological trajectories over the last ~20-30 years, the differential impacts of disturbance on contemporary carbonate production regimes and on reef growth potential can be explored. In the Caribbean, a region which has been severely impacted ecological over the last 30+ years, our datasets show that average carbonate production rates on reefs are now less than 50% of pre-disturbance rates, and that calculated accretion rates (mm yr-1) are an about order of magnitude lower within shallow water habitats compared to Holocene averages. Collectively, these data suggest that recent ecological declines are now propagating through the system to impact on the geomorphic performance of Caribbean reefs and will impair their future growth potential. In contrast, the carbonate budgets of most reefs across the Chagos archipelago (central Indian Ocean), which is geographically remote and largely isolated from direct human disturbances, have recovered rapidly from major past disturbances (specifically the 1998 coral bleaching event). The carbonate budgets on these remote reefs now average +3.7 G (G = kg CaCO3 m-2 yr-1). Most significantly the production rates on Acropora-dominated reefs, which were most severely impacted by the 1998 bleaching event, average +8.4 G, comparable with estimates under pre-human disturbance conditions, and are reflected in high reef growth rates (4.2 mm yr-1). These reefs thus retain the capacity to grow at rates exceeding measured regional mid-late Holocene and 20th century sea-level rise, and close to IPCC sea-level rise projections through to 2100. However, their positive growth potential is strongly tied to the persistence of several key coral species, and thus the frequency and magnitude of future disturbance events will be key determinants of near-future reef growth.

A Bayesian-Based System to Assess Wave-Driven Flooding Hazards on Coral Reef-Lined Coasts

NASA Astrophysics Data System (ADS)

Pearson, S. G.; Storlazzi, C. D.; van Dongeren, A. R.; Tissier, M. F. S.; Reniers, A. J. H. M.

2017-12-01

Many low-elevation, coral reef-lined, tropical coasts are vulnerable to the effects of climate change, sea level rise, and wave-induced flooding. The considerable morphological diversity of these coasts and the variability of the hydrodynamic forcing that they are exposed to make predicting wave-induced flooding a challenge. A process-based wave-resolving hydrodynamic model (XBeach Non-Hydrostatic, "XBNH") was used to create a large synthetic database for use in a "Bayesian Estimator for Wave Attack in Reef Environments" (BEWARE), relating incident hydrodynamics and coral reef geomorphology to coastal flooding hazards on reef-lined coasts. Building on previous work, BEWARE improves system understanding of reef hydrodynamics by examining the intrinsic reef and extrinsic forcing factors controlling runup and flooding on reef-lined coasts. The Bayesian estimator has high predictive skill for the XBNH model outputs that are flooding indicators, and was validated for a number of available field cases. It was found that, in order to accurately predict flooding hazards, water depth over the reef flat, incident wave conditions, and reef flat width are the most essential factors, whereas other factors such as beach slope and bed friction due to the presence or absence of corals are less important. BEWARE is a potentially powerful tool for use in early warning systems or risk assessment studies, and can be used to make projections about how wave-induced flooding on coral reef-lined coasts may change due to climate change.