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Sample records for potentials epic okinawa

  1. Potential substitution of mineral P fertilizer by manure: EPIC development and implementation

    NASA Astrophysics Data System (ADS)

    Azevedo, Ligia B.; Vadas, Peter A.; Balkovič, Juraj; Skalský, Rastislav; Folberth, Christian; van der Velde, Marijn; Obersteiner, Michael

    2016-04-01

    Sources of mineral phosphorus (P) fertilizers are non-renewable. Although the longevity of P mines and the risk of future P depletion are highly debated P scarcity may be detrimental to agriculture in various ways. Some of these impacts include increasing food insecurity and nitrogen (N) and P imbalances, serious fluctuations in the global fertilizer and crop market prices, and contribution in geopolitical conflicts. P-rich waste produced from livestock production activities (i.e. manure) are an alternative to mineral P fertilizer. The substitution of mineral fertilizer with manure (1) delays the depletion of phosphate rock stocks, (2) reduces the vulnerability of P fertilizer importing countries to sudden changes in the fertilizer market, (3) reduces the chances of geopolitical conflicts arising from P exploitation pressures, (4) avoids the need for environmental protection policies in livestock systems, (5) is an opportunity for the boosting of crop yields in low nutrient input agricultural systems, and (6) contributes to the inflow of not only P but also other essential nutrients to agricultural soils. The Environmental Policy Integrated Climate model (EPIC) is a widely used process-based, crop model integrating various environmental flows relevant to crop production as well as environmental quality assessments. We simulate crop yields using a powerful computer cluster infra-structure (known as EPIC-IIASA) in combination with spatially-explicit EPIC input data on climate, management, soils, and landscape. EPIC-IIASA contains over 131,000 simulation units and it has 5 arc-min resolution. In this work, we implement two process-based models of manure biogeochemistry into EPIC-IIASA, i.e. SurPhos (for P) and Manure DNDC (for N and carbon) and a fate model model describing nutrient outflows from fertilizer via runoff. For EGU, we will use EPIC-IIASA to quantify the potential of mineral P fertilizer substitution with manure. Specifically, we will estimate the relative

  2. Transformer Efficiency Assessment - Okinawa, Japan

    SciTech Connect

    Thomas L. Baldwin; Robert J. Turk; Kurt S. Myers; Jake P. Gentle; Jason W. Bush

    2012-05-01

    The US Army Engineering & Support Center, Huntsville (USAESCH), and the US Marine Corps Base (MCB), Okinawa, Japan retained Idaho National Laboratory (INL) to conduct a Transformer Efficiency Assessment of “key” transformers located at multiple military bases in Okinawa, Japan. The purpose of this assessment is to support the Marine Corps Base, Okinawa in evaluating medium voltage distribution transformers for potential efficiency upgrades. The original scope of work included the MCB providing actual transformer nameplate data, manufacturer’s factory test sheets, electrical system data (kWh), demand data (kWd), power factor data, and electricity cost data. Unfortunately, the MCB’s actual data is not available and therefore making it necessary to de-scope the original assessment. Note: Any similar nameplate data, photos of similar transformer nameplates, and basic electrical details from one-line drawings (provided by MCB) are not a replacement for actual load loss test data. It is recommended that load measurements are performed on the high and low sides of transformers to better quantify actual load losses, demand data, and power factor data. We also recommend that actual data, when available, be inserted by MCB Okinawa where assumptions have been made and then the LCC analysis updated. This report covers a generalized assessment of modern U.S. transformers in a three level efficiency category, Low-Level efficiency, Medium-Level efficiency, and High-Level efficiency.

  3. Transformer Efficiency Assessment - Okinawa, Japan

    SciTech Connect

    Thomas L. Baldwin; Robert J. Turk; Kurt S. Myers; Jake P. Gentle; Jason W. Bush

    2012-08-01

    The US Army Engineering & Support Center, Huntsville (USAESCH), and the US Marine Corps Base (MCB), Okinawa, Japan retained Idaho National Laboratory (INL) to conduct a Transformer Efficiency Assessment of “key” transformers located at multiple military bases in Okinawa, Japan. The purpose of this assessment is to support the Marine Corps Base, Okinawa in evaluating medium voltage distribution transformers for potential efficiency upgrades. The original scope of work included the MCB providing actual transformer nameplate data, manufacturer’s factory test sheets, electrical system data (kWh), demand data (kWd), power factor data, and electricity cost data. Unfortunately, the MCB’s actual data is not available and therefore making it necessary to de-scope the original assessment. Note: Any similar nameplate data, photos of similar transformer nameplates, and basic electrical details from one-line drawings (provided by MCB) are not a replacement for actual load loss test data. It is recommended that load measurements are performed on the high and low sides of transformers to better quantify actual load losses, demand data, and power factor data. We also recommend that actual data, when available, be inserted by MCB Okinawa where assumptions have been made and then the LCC analysis updated. This report covers a generalized assessment of modern U.S. transformers in a three level efficiency category, Low-Level efficiency, Medium-Level efficiency, and High-Level efficiency.

  4. Degradation potential and microbial community structure of heavy oil-enriched microbial consortia from mangrove sediments in Okinawa, Japan.

    PubMed

    Bacosa, Hernando P; Suto, Koichi; Inoue, Chihiro

    2013-01-01

    Mangroves constitute valuable coastal resources that are vulnerable to oil pollution. One of the major processes to remove oil from contaminated mangrove sediment is microbial degradation. A study on heavy oil- and hydrocarbon-degrading bacterial consortia from mangrove sediments in Okinawa, Japan was performed to evaluate their capacity to biodegrade and their microbial community composition. Surface sediment samples were obtained from mangrove sites in Okinawa (Teima, Oura, and Okukubi) and enriched with heavy oil as the sole carbon and energy source. The results revealed that all enriched microbial consortia degraded more than 20% of heavy oil in 21 days. The K1 consortium from Okukubi site showed the most extensive degradative capacity after 7 and 21 days. All consortia degraded more than 50% of hexadecane but had little ability to degrade polycyclic aromatic hydrocarbons (PAHs). The consortia were dominated by Pseudomonas or Burkholderia. When incubated in the presence of hydrocarbon compounds, the active bacterial community shifted to favor the dominance of Pseudomonas. The K1 consortium was a superior degrader, demonstrating the highest ability to degrade aliphatic and aromatic hydrocarbon compounds; it was even able to degrade heavy oil at a concentration of 15%(w/v). The dominance and turn-over of Pseudomonas and Burkholderia in the consortia suggest an important ecological role for and relationship between these two genera in the mangrove sediments of Okinawa.

  5. Photochemical Formation of Hydroxyl Radical in Red-Soil-Polluted Seawater in Okinawa, Japan -Potential Impacts on Marine Organisms

    NASA Astrophysics Data System (ADS)

    Arakaki, T.; Hamdun, A. M.; Okada, K.; Kuroki, Y.; Ikota, H.; Fujimura, H.; Oomori, T.

    2004-12-01

    Development of pineapple farmlands and construction of recreational facilities caused runoff of red soil into coastal ocean (locally termed as red-soil-pollution) in the north of Okinawa Island, Japan. In an attempt to understand the impacts of red soil on oxidizing power of the seawater, we studied formation of hydroxyl radical (OH radical), the most potent oxidant in the environment, in red-soil-polluted seawaters, using 313 nm monochromatic light. Photo-formation rates of OH radical showed a good correlation with dissolved iron concentrations (R = 0.98). The major source of OH radical was found to be the Fenton reaction (a reaction between Fe(II) and HOOH). The un-filtered red-soil-polluted seawater samples exhibited faster OH radical formation rates than the filtered samples, suggesting that iron-bearing red soil particles enhanced formation of OH radical.

  6. Island of Okinawa, Japan

    NASA Technical Reports Server (NTRS)

    1982-01-01

    The island of Okinawa, (26.5N, 128.0E) largest of the Ryukyu Islands, Japan. The Ryukyu island group lies south of the main home islands of Japan in an arc towards the Chinese island Republic of Taiwan. As is typical throughout the Japanese home islands, intense urban development can be observed all over the island in this near vertical view.

  7. Teaching the Epic.

    ERIC Educational Resources Information Center

    Fleming, Margaret, Ed.

    Assembled to aid high school literature teachers in exploring the epic with their students, materials in this book approach the epic as a product of a specific culture which presents vivid pictures of earlier societies. Following the introduction and the opening essay, "The Role of the Supernatural in the Epic," chapters are grouped under the…

  8. Okinawa, Japan: Geologic Battleground

    NASA Astrophysics Data System (ADS)

    Waymack, S. W.; Carrington, M. P.; Harpp, K. S.

    2005-12-01

    One of our main goals as instructors, particularly in introductory courses, is to impart students with an appreciation of how geology has influenced the course of human events. Despite the apparent accessibility of such topics, communicating this in a lively, relevant, and effective way often proves difficult. We use a series of historical events, the Pacific island hopping campaign of WWII, to engage students in an active, guided inquiry exercise to explore how terrain and the underlying geology of an area can shape historical events. Teams of students are assigned the role of planning either the defense or occupation of Okinawa Island, in the Ryukyu arc, in a theoretical version of the 1945 conflict. Students are given a package of information, including geologic and topographic maps, a list of military resources available to them at the time, and some historical background. Students also have access to "reconnaissance" images, 360o digital panoramas of the landscape of Okinawa, keyed to their maps. Each team has a week to plan their strategies and carry out additional research, which they subsequently bring to the table in the form of a written battle plan. With an instructor as arbiter, teams alternate drawing their maneuvers on a map of the island, to which the other team then responds. This continues one move at a time, until the instructor declares a victor. Throughout the exercise, the instructor guides students through analysis of each strategic decision in light of the island's structure and topography, with an emphasis on the appropriate interpretation of the maps. Students soon realize that an understanding of the island's terrain literally meant the difference between life and death for civilians and military participants alike in 1945. The karst landscape of Okinawa posed unique obstacles to both the Japanese and the American forces, including difficult landing sites, networks of natural caves, and sequences of hills aligned perpendicular to the

  9. EPIC Computer Upgrade

    NASA Video Gallery

    Expedition 30 Commander Dan Burbank and Flight Engineer Don Pettit work on installing hardware for the Enhanced Processor and Integrated Communications (EPIC) upgrade of the International Space Sta...

  10. Crustal structure of the southern Okinawa Trough: Symmetrical rifting, submarine volcano, and potential mantle accretion in the continental back-arc basin

    NASA Astrophysics Data System (ADS)

    Arai, Ryuta; Kodaira, Shuichi; Yuka, Kaiho; Takahashi, Tsutomu; Miura, Seiichi; Kaneda, Yoshiyuki

    2017-01-01

    Back-arc basins are a primary target to understand lithospheric evolution in extension associated with plate subduction. Most of the currently active back-arc basins formed in intraoceanic settings and host well-developed spreading centers where seafloor spreading has occurred. However, rift structure at its initial stage, a key to understand how the continental lithosphere starts to break in a magma-rich back-arc setting, is poorly documented. Here we present seismological evidence for structure of the southern Okinawa Trough, an active rift zone behind the Ryukyu subduction zone. We find that the southern Okinawa Trough exhibits an almost symmetric rift system across the rift axis (Yaeyama Rift) and that the sedimentary layers are highly cut by inward dipping normal faults. The rift structure also accompanies a narrow (2-7 km wide) on-axis intrusion resulted from passive upwelling of magma. On the other hand, an active submarine volcano is located 10 km away from the rift axis. The P wave velocity (Vp) model derived from seismic refraction data suggests that the crust has been significantly thinned from the original 25 km thick arc crust and the thinnest part with 12 km thickness occurs directly beneath the rift axis. The velocity model also reveals that there exists a thick layer with Vp of 6.5-7.2 km/s at lower crustal levels and may indicate that mantle materials accreted at the bottom of the crust during the crustal stretching. The abrupt crustal thinning and the velocity-depth profile suggest that the southern Okinawa Trough is at a transitional stage from continental rifting to seafloor spreading.

  11. Potential Scientific Output from the Visible Channels of EPIC Spectroradiometer as Part of the DSCOVR L1 Mission

    NASA Technical Reports Server (NTRS)

    Marshak, Alexander; Herman, Jay

    2011-01-01

    In addition to 4 UV channels, the EPIC spectroradiometer will provide measurements at 6 visible (and near IR) channels (443,551,680,687.75, 764 and 779.9 nm) at roughly 10 km spatial resolution. The scattering angles are near backscattering and vary between 165 and 176 degree. Two pairs {680 and 687.75 nm} and {764 and 779.9 nm} represent 02 B- and A-bands (and their references) channels; they will be used for cloud height measurements over land and ocean. The B-band channel will contribute to the more absorbing A-band measurements over bright vegetation. A pair {680 and 779.9 nm} will be used for retrieving vegetation properties. Due to the special EPIC geometry, the illuminated part of the leaves will be always observed. As a result, in additional to the traditional Leaf Area Index (LAI), these observations for the first time will provide the sunlit fraction of LAI. Since the sunlit and shaded leaves exhibit different photosynthetic response to incident radiation, these measurements will help to improve global ecological and biogeochemistry models. Finally, a pair {443 and 551 nm} will be used for atmospheric correction. As a by-product of the atmospheric correction algorithm, we also expect to get aerosol optical thickness (AOT) and surface bidirectional reflection function (BRF). The presentation will briefly overview the proposed science algorithms.

  12. T-cell lymphoma in a wild Okinawa rail (Gallirallus okinawae).

    PubMed

    Neagari, Yasuko; Nagamine, Takashi; Nakaya, Yumiko; Onuma, Manabu; Murata, Koichi; Kuwana, Takashi

    2011-03-01

    The Okinawa rail (Gallirallus okinawae) is an endangered species that inhabits the northern part of Okinawa Main Island in southern Japan. A wild Okinawa rail was rescued from a road in Kunigami Village in Okinawa in October 2009. The bird subsequently died and underwent necropsy. Tumors were found in the liver, spleen and part of the small intestine. Microscopically, lymphoid neoplasm was confirmed in these tissues. The tumor cells were mainly positive for CD3 and CD8α by immunohistochemistry. No Marek's disease virus genes were detected by PCR of a liver tumor. This is the first report of T-cell lymphoma in the Okinawa rail.

  13. American Epic: Then and Now.

    ERIC Educational Resources Information Center

    Glazer, Nathan

    1998-01-01

    Argues that the epic of America as frontier and vast land of freedom has been replaced by an epic that emphasizes racial and ethnic diversity in America, whether in an optimistic or pessimistic mood. The old epic was connected with an available frontier, but the new epic is city-centered in the stories of minorities. (SLD)

  14. EPIC/JANUS user's guide

    SciTech Connect

    Not Available

    1986-07-30

    EPIC/JANUS, the Energy Information Administration's (EIA) Publication and Interactive Composition System, is a software system the allows text, tables, halftones, and graphics to be combined interactively in a single document. In essence, it automates the entire process of composition and production of camera-ready copy. EPIC is a machine-independent document management and translation system developed by EIA. JANUS is an interactive document composition system which formats and typesets a document. This User's Guide provides complete information on how to use the EPIC/JANUS system. Included in the discussion are sections on getting started, the EPIC system and EIA Standard Text Codes, EPIC interactive commands, graphics in EPIC/JANUS, tables in EPIC/JANUS, EPIC Error messages, MVS and VM listings from EPIC/JANUS, using JANUS interactively, mathematical formula, and producing EPIC/JANUS publications through a displaywriter. Appendices contain a quick reference guide to text codes and text code examples. (DWL)

  15. Perspectives on Epic Physics

    SciTech Connect

    Brodsky, Stanley J.

    1999-07-14

    An electron-proton/ion polarized beam collider (EPIC) with high luminosity and center of mass energy square root s = 25 GeV would be a valuable facility for fundamental studies of proton and nuclear structure and tests of quantum chromodynamics, I review a sample of prospective EPIC topics, particularly semi-exclusive reactions, studies of the proton fragmentation region, heavy quark electroproduction, and a new probe of odderon/pomeron interference.

  16. Hawaii-Okinawa Building Evaluations

    SciTech Connect

    Metzger, I.; Salasovich, J.

    2013-05-01

    NREL conducted energy evaluations at the Itoman City Hall building in Itoman, Okinawa Prefecture, Japan, and the Hawaii State Capitol building in Honolulu, Hawaii. This report summarizes the findings from the evaluations, including the best practices identified at each site and opportunities for improving energy efficiency and renewable energy. The findings from this evaluation are intended to inform energy efficient building design, energy efficiency technology, and management protocols for buildings in subtropical climates.

  17. EPIC: A Framework for Using Video Games in Ethics Education

    ERIC Educational Resources Information Center

    Schrier, Karen

    2015-01-01

    Ethics education can potentially be supplemented through the use of video games. This article proposes a novel framework (Ethics Practice and Implementation Categorization [EPIC] Framework), which helps educators choose games to be used for ethics education purposes. The EPIC Framework is derived from a number of classic moral development,…

  18. EPICS-DDS

    SciTech Connect

    Malitsky,N.; Shah, J.; Hasabnis, N.

    2009-05-04

    This paper presents a new extension to EPICS, approaching the Data Distributed Service (DDS) interface based on the Channel Access protocol. DDS is the next generation of middleware industrial standards, bringing a data-centric publish-subscribe paradigm to distributed control systems. In comparison with existing middleware technologies, the data-centric approach is able to provide a consistent consolidated model supporting difference data dissemination scenarios and integrating many important issues, such as quality of service, user-specific data structures, and others. The paper considers different features of the EPICS-DDS layer in the context of the high-level accelerator environment.

  19. Progress in infant health in Okinawa, Japan.

    PubMed

    Hokama, Tomiko; Binns, Colin

    2012-07-01

    The infant mortality rate (IMR) and neonatal mortality rate (NMR) defined as the number of infant and newborn deaths per 1000 live births, respectively, are widely accepted as population indicators of the level of perinatal and postnatal health. Since the end of World War II, Japan has made substantial progress in reducing its IMR and NMR. This resulted from improving living standards and the provision of universal maternal and child health care (MCH) services. Okinawa, the island prefecture that is the furthest from mainland Japan, had the third highest IMR and the highest low-birth-weight rate (LBW) among all prefectures when its statistics were integrated into Japan in 1973. Even though the LBW rate in Okinawa has remained higher than the all-Japan average, Okinawa has shown a considerable improvement in IMR and NMR. The aim is to review the trends in IMR, NMR, and LBW in Japan and Okinawa and to discuss sociodemographic trends, economics, and the provision of health care services. The IMR and NMR in Okinawa decreased during that time from 14.8 to 2.4 and from 7.5 to 0.8, respectively. The LBW rate decreased until the mid-1980s, but since then it has increased to 11.5 (Okinawa) and 9.6 (Japan) in 2009. Okinawa's public health and primary health care model for infants has been very successful and may be applicable to child health in island nations of the Asia-Pacific region.

  20. EPIC'S PRODUCTS AND SERVICES

    EPA Science Inventory

    EPIC completes approximately 150 site characterizations annually using current and historical aerial photographs. This work is done in support of EPA Regional and Program
    offices. Site characterization provides detailed information about a site and its history, often going ba...

  1. Tectonic evolution of the northernmost Okinawa Trough

    NASA Astrophysics Data System (ADS)

    Oiwane, H.; Tonai, S.; Nakamura, Y.; Kiyokawa, S.; Tokuyama, H.

    2007-12-01

    Over the last decades, mechanism of backarc opening has been the subject of controversy. Okinawa Trough has been noticed as an incipient continental backarc basin. So far studies on the Okinawa Trough have been conducted mainly in its southern and middle part. Nevertheless, only a few studies have been conducted on the relationship between geologic structures and the tectonic evolution of northernmost Okinawa Trough. Our main object is to consider the tectonic evolution of the Okinawa Trough by means of structural geology, not only in ocean but also land area. We executed seismic reflection survey in northernmost Okinawa trough and investigated fault systems on Koshikijima islands located on northeastern edge of the Okinawa Trough. Then we compared geologic structures on land and sea floor. First of all, we interpreted seismic reflection data acquired by hydraulic department of Japan Coast Guard in northernmost Okinawa Trough in 1975. Furthermore, we executed multi-channel seismic reflection survey in this area (KT06-03, KT07-03 cruise). NNE and ENE trending fault systems were recognized. It is clear that Northernmost Okinawa Trough has been subsided by activation of NNE trending fault system at the east edge of trough basin with several hundred meters of displacement. The ENE trending fault system has displacement in the surface sediment, which means they are active faults. On the other hand, we held on-land field survey in northern part of the Koshikijima Islands. Fault system, which can be related to the Okinawa Trough, is reported in this area (Inoue et al., 1982). So we focused on that NNE trending normal fault system (F2 fault system). On the basis of crosscut relationship and K-Ar dating of fault rocks and dikes, F2 fault system was formed after late Miocene and likely to have been formed in a shallow underground. F2 fault system on Koshikijima islands and NNE trending fault systems in the Okinawa Trough have similar strike, displaced direction and

  2. The Owens Valley Epics

    ERIC Educational Resources Information Center

    Bahr, Donald

    2007-01-01

    One of the best-studied, least-discussed texts of Native American oral literature is a long Mojave "epic" taken down from a man named Inyo-kutavere by Alfred Kroeber in 1902 and published in 1951. The text was published in twenty-nine pages along with forty-eight pages of commentary and twenty-five pages of notes. In 1999, Arthur Hatto, an…

  3. Serum carbon and nitrogen stable isotopes as potential biomarkers of dietary intake and their relation with incident type 2 diabetes: the EPIC-Norfolk study123

    PubMed Central

    Patel, Pinal S; Cooper, Andrew JM; O'Connell, Tamsin C; Kuhnle, Gunter GC; Kneale, Catherine K; Mulligan, Angela M; Luben, Robert N; Brage, Soren; Khaw, Kay-Tee; Wareham, Nicholas J; Forouhi, Nita G

    2014-01-01

    Background: Stable-isotope ratios of carbon (13C/12C, expressed as δ13C) and nitrogen (15N/14N, or δ15N) have been proposed as potential nutritional biomarkers to distinguish between meat, fish, and plant-based foods. Objective: The objective was to investigate dietary correlates of δ13C and δ15N and examine the association of these biomarkers with incident type 2 diabetes in a prospective study. Design: Serum δ13C and δ15N (‰) were measured by using isotope ratio mass spectrometry in a case-cohort study (n = 476 diabetes cases; n = 718 subcohort) nested within the European Prospective Investigation into Cancer and Nutrition (EPIC)–Norfolk population-based cohort. We examined dietary (food-frequency questionnaire) correlates of δ13C and δ15N in the subcohort. HRs and 95% CIs were estimated by using Prentice-weighted Cox regression. Results: Mean (±SD) δ13C and δ15N were −22.8 ± 0.4‰ and 10.2 ± 0.4‰, respectively, and δ13C (r = 0.22) and δ15N (r = 0.20) were positively correlated (P < 0.001) with fish protein intake. Animal protein was not correlated with δ13C but was significantly correlated with δ15N (dairy protein: r = 0.11; meat protein: r = 0.09; terrestrial animal protein: r = 0.12, P ≤ 0.013). δ13C was inversely associated with diabetes in adjusted analyses (HR per tertile: 0.74; 95% CI: 0.65, 0.83; P-trend < 0.001], whereas δ15N was positively associated (HR: 1.23; 95% CI: 1.09, 1.38; P-trend = 0.001). Conclusions: The isotope ratios δ13C and δ15N may both serve as potential biomarkers of fish protein intake, whereas only δ15N may reflect broader animal-source protein intake in a European population. The inverse association of δ13C but a positive association of δ15N with incident diabetes should be interpreted in the light of knowledge of dietary intake and may assist in identifying dietary components that are associated with health risks and benefits. PMID:24990425

  4. Comments on dietary restriction, Okinawa diet and longevity.

    PubMed

    Gavrilova, Natalia S; Gavrilov, Leonid A

    2012-01-01

    Longevity in Okinawa is considered to be a result of traditional low calorie diet. Le Bourg suggests that Okinawa is an example of severe malnutrition, which is harmful for later generations. We believe that current loss of longevity advantage in Okinawa is a result of diet westernization and that the dietary restriction is a valid way of life extension in humans.

  5. Tectonic evolution and volcanism of Okinawa Trough

    SciTech Connect

    Sibuet, J.C.; Letouzey, J.; Marsset, B.; Davagnier, M.; Foucher, J.P.; Bougault, H.; Dosso, L.; Maury, R.; Joron, J.L.

    1986-07-01

    The Okinawa Trough is a back-arc basin formed by extension of the east China continental lithosphere behind the Ryukyu Trench system. The age of marine deposits drilled in the northern Okinawa Trough indicates a Miocene age for the splitting of the volcanic arc and the first tensional movements. The POP 1 cruise of the R/V Jean-Charcot (September-October 1984) provided new evidence concerning the two main periods of extension as recognized by Kimura (Marine and Petroleum Geology, 1985). Tilted fault blocks in the northern Okinawa Trough trend north 40/sup 0/-60/sup 0/ and belong to the early Pleistocene phase (2-0.5 Ma). The present-day phase is characterized over the entire basin by normal faults oriented 80/sup 0/N in the north and 90/sup 0/N in the south. In the southern Okinawa Trough, most of the deformation occurs along linear, subparallel, en echelon depressions intruded by volcanic ridges associated with positive magnetic anomalies. The system of volcanic ridges ends northeast of Okinawa Island in a series of parallel volcanic ridges named the VAMP (Volcanic arc-rift migration processes) area, which merges into an active volcanic chain extending north to Japan. Chemical analyses of the vesicular basalts dredged on the back-arc basin display flat to enriched rare-earth patterns. The niobium-tantalum negative anomalies reflect a subduction signature. A good positive correlation between strontium isotopic compositions and concentrations suggests a contamination effect.

  6. Genetic diversity and phylogeny of the endangered Okinawa Rail, Gallirallus okinawae.

    PubMed

    Ozaki, Kiyoaki; Yamamoto, Yoshihiro; Yamagishi, Satoshi

    2010-02-01

    Genetic diversity of the wild population of the endangered Okinawa Rail, Gallirallus okinawae, was revealed by analyzing haplotypes in the mitochondrial control region for 177 individuals. We found 6 haplotypes with nucleotide differences at 6 sites. The four major haplotypes, Type 1 to Type 4, were present in 121 (68.4%), 21 (11.9%), 8 (4.5%) and 25 individuals (14.1%), respectively. Type 5 and Type 6 were each found in one individual. The gene diversity (h) and nucleotide diversity (pi) of Okinawa Rail were calculated to be 0.499 +/- 0.040 and 0.00146 +/- 0.00098, respectively. Gene diversity in Okinawa Rail is higher than that found in other endangered avian species, but the relative nucleotide diversity is lower due to few nucleotide differences among the haplotypes. Our sample of 177 individuals represents 20-25% of the total population, and thus allows a rigorous estimate of the population structure of Okinawa Rail, and makes it unlikely that more haplotypes would be found with additional sampling. The low nucleotide diversity in the control region may indicate that Okinawa Rail has gone through a recent bottleneck. The minimal span network of haplotypes, and the distribution pattern of sampled individuals, indicate that the number of birds with rare haplotypes, Type 5 and 6, decreased during the recent population decline caused by habitat loss and introduced predators. Our results are relevant to the current conservation program for the endangered Okinawa Rail, and perhaps for other species of flightless rails.

  7. DSCOVR_EPIC_L1A

    Atmospheric Science Data Center

    2017-01-04

    DSCOVR_EPIC_L1A Full sun-light Earth images calibrated with ... 551NM 680NM 688NM 764NM 780NM DSCOVR EPIC IMAGERY L1B LAGRANGE Order Data:  Earthdata ... Guide Documents:  DSCOVR Overview EPIC Data Format Control Book DSCOVR EPIC L0L1a Processor V01 ...

  8. Using EPIC to search the OCLC Online Union Catalog in a health sciences library.

    PubMed

    Richwine, P W

    1991-01-01

    EPIC is a service that provides keyword or subject access to the OCLC Online Union Catalog (OLUC). This capability increases the success rate for title location as well as the potential uses of the OLUC. The features of the EPIC system, application of these features to the OLUC, and specific uses in health sciences libraries are described in this article.

  9. Imported malaria cases in Okinawa Prefecture, Japan.

    PubMed

    Higa, Futoshi; Tateyama, Masao; Tasato, Daisuke; Karimata, Yosuke; Nakamura, Hideta; Miyagi, Kazuya; Haranaga, Shusaku; Hirata, Tetsuo; Hokama, Akira; Cash, Haley L; Toma, Hiromu; Fujita, Jiro

    2013-01-01

    With the increase in global transportation, imported malaria has become a significant public health concern in Japan. In the present study, we retrospectively analyzed all imported malaria cases in Okinawa Prefecture from 1988 to 2012. In that period, 23 patients with imported malaria were admitted to the University of the Ryukyus Hospital. Malaria types observed included Plasmodium falciparum (14 cases), P. vivax (7 cases), combined P. falciparum and P. ovale (1 case), and combined P. vivax and P. malariae (1 case). All cases were resolved by anti-malarial treatment. The clinical data from these patients highlights the importance of collecting patient travel history and ensuring an adequate supply of both diagnostic test and drug treatments in Okinawa.

  10. DSCOVR_EPIC_L1B

    Atmospheric Science Data Center

    2017-01-04

    DSCOVR_EPIC_L1B Full sun-light Earth images, georectified to the same ... 551NM 680NM 688NM 764NM 780NM DSCOVR EPIC IMAGERY L1B LAGRANGE Order Data:  Earthdata ...   Order Data Readme Files:  EPIC Data Format Control Book SCAR-B Block:  ...

  11. EPICS system: system structure and user interface

    SciTech Connect

    West, R.E.; Bartlett, J.F.; Bobbitt, J.S.; Lahey, T.E.; Kramper, B.J.; MacKinnon, B.A.

    1984-02-01

    This paper present the user's view of and the general organization of the EPICS control system at Fermilab. Various subsystems of the EPICS control system are discussed. These include the user command language, software protection, the device database, remote computer interfaces, and several application utilities. This paper is related to two other papers on EPICS: an overview paper and a detailed implementation paper.

  12. Demographic, phenotypic, and genetic characteristics of centenarians in Okinawa and Japan: Part 1-centenarians in Okinawa.

    PubMed

    Willcox, Bradley J; Willcox, Donald Craig; Suzuki, Makoto

    2016-11-12

    A study of elderly Okinawans has been carried out by the Okinawa Centenarian Study (OCS) research group for over four decades. The OCS began in 1975 as a population-based study of centenarians (99-year-olds and older) and other selected elderly persons residing in the main island of the Japanese prefecture of Okinawa. As of 2015, over 1000 centenarians have been examined. By several measures of health and longevity the Okinawans can claim to be the world's healthiest and longest-lived people. In this paper we explore the demographic, phenotypic, and genetic characteristics of this fascinating population.

  13. Industrial partnerships yield EPIC results

    SciTech Connect

    Moore, T.

    1996-08-01

    With a new era of competition approaching in the electricity supply industry, utilities are getting closer than ever to their industrial customers, in many cases making direct alliances as partners to help customers become more efficient, productive, and competitive. The EPRI Partnership for Industrial Competitiveness (EPIC) program aims to help industrial customers address critical priorities in environmental impact, efficiency, and productivity with the ultimate goals of long-term profitability and job retention. By offering in-plant consultant evaluations of systems and processes, EPIC helps industrial customers develop strategic insights into their operations and leverage technology and productivity solutions for competitive business advantage.

  14. Extrasolar Planetary Imaging Coronagraph (EPIC)

    NASA Technical Reports Server (NTRS)

    Clampin, Mark

    2009-01-01

    EPIC is a NASA mission being studied to detect and characterize Jovian and superEarth planets, and, the dust/debris disks surrounding the parent star. It will be launched into a heliocentric Earth trailing orbit and operate for 5 years. EPIC would operate over the wavelength range of 480 - 960 nm with spectral resolutions of R < 50 and employs a visible nulling coronagraph (VNC) to suppress the starlight, yielding contrast ratios of greater than 9 orders of magnitude. We will discuss the science mission, and its role in the search for habitable planets.

  15. Microbial Communities of the Okinawa Backarc Basin Subvent Biosphere

    NASA Astrophysics Data System (ADS)

    Brandt, L. D.; House, C. H.

    2014-12-01

    IODP Expedition 331 to the Okinawa backarc basin provided an opportunity to study the microbial stratigraphy within the sediments surrounding a hydrothermal vent. The Okinawa backarc basin is a sedimented region of the seafloor located on a continental margin, and also hosts a hydrothermal network within the subsurface. Site C0014 within the Iheya North hydrothermal field is located 450 m east of the active vent and has a surface temperature of 5°C with no evidence of hydrothermal alteration within the top 10 m. Temperature increases with depth at an estimated rate of 3°C/m and transitions from non-hydrothermal margin sediments to a hydrothermally altered regime below 10 m. Site C0014 is a unique location to study changes in microbial communities with depth, as the hydrothermal system generates a thermally and geochemically restrictive subvent biosphere. In this study, we utilized deep 16S rRNA sequencing of DNA from IODP Expedition 331 Site C0014 sediment horizons in order to assess diversity throughout the sediment column as well as determine the potential limits of the biosphere. Analysis of the amplicon data suggests that Archaea represent a significant proportion of the indigenous community throughout the top 15 m of sediment, where Archaea then abruptly disappear. Furthermore, a deeper classification of Archaeal sequences suggests a transition from a mesophilic community to a potentially thermophilic one, where there is an increasingly stronger signal of Miscellaneous Crenarchaeotic Group (MCG) followed by Terrestrial Hot Spring Crenarchaeotic Group (THSCG). Additionally, there are several horizons in which methanotrophy is likely supported, indicated by peaks in anaerobic methanotrophic Archaea. The cessation of Archaea as well as Chloroflexi, a common marine subsurface bacterial phylum, at approximately 15 meters below seafloor (mbsf) is suggestive of a potential boundary within Site C0014 in which the environmental conditions have become too restrictive

  16. EPICS: Channel Access security design

    SciTech Connect

    Kraimer, M.; Hill, J.

    1994-05-01

    This document presents the design for implementing the requirements specified in: EPICS -- Channel Access Security -- functional requirements, Ned. D. Arnold, 03/09/92. Use of the access security system is described along with a summary of the functional requirements. The programmer`s interface is given. Security protocol is described and finally aids for reading the access security code are provided.

  17. Reproductive cycle observation of the Okinawa rail (Gallirallus okinawae) in the wild.

    PubMed

    Onuma, Manabu; Nagamine, Takashi; Nakaya, Yumiko; Neagari, Yasuko

    2011-09-01

    The captive breeding program of the Okinawa rail started in 2008. For successful captive breeding, information related to reproduction, such as age at sexual maturity, testicular cycles and ovulatory cycles, is essential to predict when reproduction is possible and when certain reproductive behaviors are most likely to occur. We made gross and histological observations of the reproductive organs of Okinawa rails to gain understanding of sexual maturity, the testicular cycle and the ovulatory cycle. We found that the weight of the testis was smallest in December and largest in March. Changes in the diameter of the seminiferous tubule showed the same pattern. Mature sperm were observed from March to June. The heaviest ovary was observed in April. A single peak of reproduction, from March to April, was observed in males and females. Our observations suggested that the Okinawa rail is a seasonal breeder. Establishing suitable breeding pairs will be critical to ensure success of the Okinawa rail captive breeding program. Our results suggested that pairing must be started before March. If supportive breeding is used, semen should be collected from March to June and artificial insemination conducted in April.

  18. Epidemiology of hip fractures in Okinawa, Japan.

    PubMed

    Arakaki, Harumi; Owan, Ichiro; Kudoh, Hirohisa; Horizono, Hidehiro; Arakaki, Kaoru; Ikema, Yasunari; Shinjo, Hirotaka; Hayashi, Kaori; Kanaya, Fuminori

    2011-05-01

    This study investigated the current incidence of hip fractures in Okinawa prefecture and compared the data with those obtained in our previous study, which was conducted using similar methods in 1987/1988. All patients, aged 50 years or older and residing in Okinawa, admitted to Okinawa hospitals in 2004 for a fresh hip fracture were identified from hospital registries. Details were obtained from the medical records and radiographs of all patients and classified according to fracture type (cervical or trochanteric), age, sex, and fracture location. Subtrochanteric fractures and pathological fractures were excluded. A total of 1,349 patients (242 men and 1,107 women) were admitted for a fresh hip fracture in 2004. Their average age was 76.9 years for men and 82.4 years for women. There were 671 cervical fractures, 654 trochanteric fractures, and 24 unclassified proximal femoral fractures. Comparing the data from 1987/1988 to those from 2004, the total number of hip fractures increased by 188%, from 469 to 1,349. The age-adjusted incidence rates per 100,000, standardized to the 2000 US population, were 75.7 and 296.1 in 1987/1988 and 123.6 and 420 in 2004 for men and women, respectively. The incidence rates in all age groups (at 5-year intervals) were higher in 2004 than in 1987/1988, indicating that people 50 years of age or older became more susceptible to hip fractures. Accordingly, the accretion of the hip fracture incidence rate was greater than that which could be explained purely by changes in population size and structure.

  19. [Three Cases of Tsutsugamushi Disease in Miyakojima Island, Okinawa, Japan].

    PubMed

    Nakamura, Kei; Shinzato, Takashi

    2015-03-01

    Tsutsugamushi disease (Scrub thyphus) has been reported from all over Japan except the Hokkaido area. In Okinawa, only one patient was reported in 2001, who was infected outside Okinawa Prefecture. The first case infected in Okinawa was reported at Miyakojima Island in 2008. We report herein on the second case diagnosed in 2010, and the third and fourth in 2011, and all three patients were suspected to have been infected at Ikemajima Island adjacent to the island of Miyakojima. The patients recovered without any severe complications after antibiotic therapy with tetracyclines. We should take Tsutsugamushi disease into consideration in the differential diagnosis for a patient with fever, skin rash, and/or eschar even in the Okinawa area. Implementation of appropriate information and education about the disease should be carried out for local residents and tourists.

  20. EPICS release 3.11 specific documentation -- EPICS release notes for 3.11

    SciTech Connect

    1994-01-19

    EPICS release 3.11 is now ready for user testing. A person who wants to set up a simplified application environment to boot an IOC and create databases using R3.11 should follow the directions in Appendix B, page 27, of the EPICS Source/Release Control Manual, Sept. 20, 1993. The R3.11 EPICS path at ANL/APS is /net/phebos/epics/R3.11 so the command to get the new release is /net/phebos/epics/R3.11/Unix/share/bin/getrel /net/phebos/epics/R3.11. An existing R3.8 short form report can be copied to this new directory and used to create a database. ANL/APS is currently testing an Application Developers Source/Release control system. It is not yet ready for general distribution. Attached are the EPICS R3.11 release notes.

  1. An Epidemiological Analysis of Summer Influenza Epidemics in Okinawa

    PubMed Central

    Sunagawa, Satoko; Iha, Yoshikazu; Taira, Katsuya; Okano, Sho; Kinjo, Takeshi; Higa, Futoshi; Kuba, Kazufumi; Tateyama, Masao; Nakamura, Katsunori; Nakamura, Shota; Motooka, Daisuke; Horii, Toshihiro; Parrott, Gretchen L.; Fujita, Jiro

    2016-01-01

    Objective This study evaluates the difference between winter influenza and summer influenza in Okinawa. Methods From January 2007 to June 2014, weekly rapid antigen test (RAT) results performed in four acute care hospitals were collected for the surveillance of regional influenza prevalence in the Naha region of the Okinawa Islands. Results An antigenic data analysis revealed that multiple H1N1 and H3N2 viruses consistently co-circulate in Okinawa, creating synchronized seasonal patterns and a high genetic diversity of influenza A. Additionally, influenza B viruses play a significant role in summer epidemics, almost every year. To further understand influenza epidemics during the summer in Okinawa, we evaluated the full genome sequences of some representative human influenza A and influenza B viruses isolated in Okinawa. Phylogenetic data analysis also revealed that multiple H1N1 and H3N2 viruses consistently co-circulate in Okinawa. Conclusion This surveillance revealed a distinct epidemic pattern of seasonal and pandemic influenza in this subtropical region. PMID:27980256

  2. An Epidemiological Analysis of Summer Influenza Epidemics in Okinawa.

    PubMed

    Sunagawa, Satoko; Iha, Yoshikazu; Taira, Katsuya; Okano, Sho; Kinjo, Takeshi; Higa, Futoshi; Kuba, Kazufumi; Tateyama, Masao; Nakamura, Katsunori; Nakamura, Shota; Motooka, Daisuke; Horii, Toshihiro; Parrott, Gretchen L; Fujita, Jiro

    Objective This study evaluates the difference between winter influenza and summer influenza in Okinawa. Methods From January 2007 to June 2014, weekly rapid antigen test (RAT) results performed in four acute care hospitals were collected for the surveillance of regional influenza prevalence in the Naha region of the Okinawa Islands. Results An antigenic data analysis revealed that multiple H1N1 and H3N2 viruses consistently co-circulate in Okinawa, creating synchronized seasonal patterns and a high genetic diversity of influenza A. Additionally, influenza B viruses play a significant role in summer epidemics, almost every year. To further understand influenza epidemics during the summer in Okinawa, we evaluated the full genome sequences of some representative human influenza A and influenza B viruses isolated in Okinawa. Phylogenetic data analysis also revealed that multiple H1N1 and H3N2 viruses consistently co-circulate in Okinawa. Conclusion This surveillance revealed a distinct epidemic pattern of seasonal and pandemic influenza in this subtropical region.

  3. Can we improve breast cancer mortality in Okinawa? Consensus of the 7th Okinawa Breast Oncology Meeting.

    PubMed

    Tamaki, Kentaro; Tamaki, Nobumitsu; Kamada, Yoshihiko; Uehara, Kano; Zaha, Hisamitsu; Onomura, Mai; Ueda, Makoto; Kurashita, Kaname; Miyazato, Keiko; Higa, Junko; Miyara, Kyuichiro; Shiraishi, Makiko; Murayama, Shigemi; Ishida, Takanori

    2015-01-01

    The rate of breast cancer mortality in Okinawa has gradually been increasing up to 2010. Now Okinawa has the second worst mortality rate in Japan, in part due to the enormous dietary changes resulting from the post-World War II US military occupation, high incidence of obesity, high non-optimal treatment rate, and low breast-cancer screening rate. To reduce breast cancer mortality in Okinawa, we established the Okinawa Breast Oncology Meeting (OBOM) in 2012. At the 7th OBOM held on January 10th, 2014, we discussed the breast cancer mortality in Okinawa focusing on lifestyle, breast cancer screening and optimal treatments. The Okinawan women who were overweight and/or obese during premenopausal and postmenopausal ages had a statistically significant higher risk of breast cancer development compared to those with non-overweight and/or obese women. The traditional diet of Okinawa consists of foods low in calories but rich in nutritional value. Therefore, we recommend Okinawan people not to forget the Okinawan traditional lifestyle, and to reduce their bodyweight to prevent breast cancer. One of the main goals of the OBOM is to raise breast cancer screening attendance rates to 50% (29.2% in 2010). We should standardize the quality control for breast cancer screening in Okinawa. It is important to continue enlightening the Okinawan population to receive optimal treatment. In addition, we are striving to establish systematic medical cooperation between the hospitals specializing in breast cancer treatment with rural hospitals. The OBOM group endeavors to contribute to the improvement of breast cancer mortality in Okinawa.

  4. Cloud Detection with the Earth Polychromatic Imaging Camera (EPIC)

    NASA Technical Reports Server (NTRS)

    Meyer, Kerry; Marshak, Alexander; Lyapustin, Alexei; Torres, Omar; Wang, Yugie

    2011-01-01

    The Earth Polychromatic Imaging Camera (EPIC) on board the Deep Space Climate Observatory (DSCOVR) would provide a unique opportunity for Earth and atmospheric research due not only to its Lagrange point sun-synchronous orbit, but also to the potential for synergistic use of spectral channels in both the UV and visible spectrum. As a prerequisite for most applications, the ability to detect the presence of clouds in a given field of view, known as cloud masking, is of utmost importance. It serves to determine both the potential for cloud contamination in clear-sky applications (e.g., land surface products and aerosol retrievals) and clear-sky contamination in cloud applications (e.g., cloud height and property retrievals). To this end, a preliminary cloud mask algorithm has been developed for EPIC that applies thresholds to reflected UV and visible radiances, as well as to reflected radiance ratios. This algorithm has been tested with simulated EPIC radiances over both land and ocean scenes, with satisfactory results. These test results, as well as algorithm sensitivity to potential instrument uncertainties, will be presented.

  5. Next generation epics interface to abstract data.

    SciTech Connect

    Hill, J. O.; Lange, R.

    2001-01-01

    The set of externally visible properties associated with process variables in the Experimental Physics and Industrial Control System (EPICS) is predefined in the EPICS base distribution and is therefore not extensible by plug-compatible applications. We believe that this approach, while practical for early versions of the system with a smaller user base, is now severely limiting expansion of the high-level application tool set for EPICS. To eliminate existing barriers, we propose a new C++ based interface to abstract containerized data. This paper describes the new interface, its application to message passing in distributed systems, its application to direct communication between tightly coupled programs co-resident in an address space, and its paramount position in an emerging role for EPICS -- the integration of dissimilar systems.

  6. EPIC View of Moon Transiting the Earth

    NASA Video Gallery

    This animation features actual satellite images of the far side of the moon, illuminated by the sun, as it crosses between the DSCOVR spacecraft's Earth Polychromatic Imaging Camera (EPIC) and tele...

  7. Dengue virus presence and surveillance in Okinawa (Review).

    PubMed

    Sakudo, Akikazu; Onodera, Takashi; Shintani, Hideharu; Ikuta, Kazuyoshi

    2012-01-01

    Recent reports have shown that the dengue virus (DENV) is a serious concern worldwide, especially in subtropical areas such as South-East Asia. With the development of transportation systems, the risk of DENV infection spreading is increasing. Since mosquitoes transmit DENV to humans, surveillance of DENV-infected mosquito vectors is the most effective approach for preventing DENV. Okinawa is the only prefecture located in a subtropical region in Japan and historically shows continuous importation of DENV-related mosquito vectors. In this review, we describe the current and historical status of DENV in Okinawa.

  8. The challenge to reduce breast cancer mortality in Okinawa: consensus of the first Okinawa breast oncology meeting.

    PubMed

    Tamaki, Kentaro; Tamaki, Nobumitsu; Kamada, Yoshihiko; Uehara, Kano; Zaha, Hisamitsu; Onomura, Mai; Gushimiyagi, Masanori; Kurashita, Kaname; Miyazato, Keiko; Tengan, Hiromu; Miyara, Kyuichiro; Ishida, Takanori

    2013-02-01

    Breast cancer mortality is gradually increasing in Okinawa. The 1st Okinawa Breast Oncology Meeting was held on 6 July 2012 and discussions on how to curb the rising trend were focused on breast cancer screening, adjuvant treatment, socioeconomic and geographic issues, and the problem of complementary and alternative medicine. The consensus of the 1st Okinawa Breast Oncology Meeting was that ultrasonography screening is an acceptable screening system for Okinawan women because of the geographic disadvantage of having many small islands and rural areas. Educational and economic support is needed for women in rural areas to get correct information, for access to urban areas and to be treated by evidence-based optimal therapy for breast cancer. In addition, new approaches are needed for Okinawan people to successfully educate patients to correctly interpret evidence-based information.

  9. The Electric Propulsion Interactions Code (EPIC)

    NASA Technical Reports Server (NTRS)

    Mikellides, I. G.; Mandell, M. J.; Kuharski, R. A.; Davis, V. A.; Gardner, B. M.; Minor, J.

    2004-01-01

    Science Applications International Corporation is currently developing the Electric Propulsion Interactions Code, EPIC, as part of a project sponsored by the Space Environments and Effects Program at the NASA Marshall Space Flight Center. Now in its second year of development, EPIC is an interactive computer tool that allows the construction of a 3-D spacecraft model, and the assessment of a variety of interactions between its subsystems and the plume from an electric thruster. These interactions may include erosion of surfaces due to sputtering and re-deposition of sputtered materials, surface heating, torque on the spacecraft, and changes in surface properties due to erosion and deposition. This paper describes the overall capability of EPIC and provides an outline of the physics and algorithms that comprise many of its computational modules.

  10. EPIC Simulations of Jovian Specific Humidity

    NASA Astrophysics Data System (ADS)

    Dowling, T. E.

    1998-09-01

    The Explicit Planetary Isentropic-Coordinate (EPIC) atmospheric model has been expanded to include the specific humidities of H_2O, NH_3, NH_4SH, and CH_4 as optional prognostic variables. This permits us to study the thermodynamical effects of clouds in a global model of the gas-giant atmospheres (active ortho-para hydrogen conversion was already part of the model). We present a report on the effects of including clouds in the Jupiter EPIC model. On the hardware front, the simulations use a new 8-processor Beowulf parallel computer (2600 MHz total CPU). On the software front, the EPIC model's data format has been switched to the netCDF (Network Common Data Format) standard, for which tools exist in IDL, Matlab, and AVS, which makes it easier to analyze results and exchange files.

  11. EPICS application source/release control

    SciTech Connect

    Zieman, B.; Anderson, J.; Kraimer, M

    1995-12-31

    This manual describes a set of Application Source/Release Control tools (appSR) that can be used to develop software for EPICS based control systems. The Application Source/Release Control System (appSR) has been unbundled from base EPICS and is now available as an EPICS extension. Due to this unbundling, two new directories must be added to a user`s path (see section ``Environment`` on page 3 for more information) and a new command getapp must be issued after the getrel command to get a specific version of appSR (see section ``Creating The Initial Application System Area`` on page 7 for more information). It is now required that GNU make version 3.71 or later be used for makes instead of SUN make. Users should now type gmake instead of make.

  12. Epic Flooding in Georgia, 2009

    USGS Publications Warehouse

    Gotvald, Anthony J.; McCallum, Brian E.

    2010-01-01

    Metropolitan Atlanta-September 2009 Floods The epic floods experienced in the Atlanta area in September 2009 were extremely rare. Eighteen streamgages in the Metropolitan Atlanta area had flood magnitudes much greater than the estimated 0.2-percent (500-year) annual exceedance probability. The Federal Emergency Management Agency (FEMA) reported that 23 counties in Georgia were declared disaster areas due to this flood and that 16,981 homes and 3,482 businesses were affected by floodwaters. Ten lives were lost in the flood. The total estimated damages exceed $193 million (H.E. Longenecker, Federal Emergency Management Agency, written commun., November 2009). On Sweetwater Creek near Austell, Ga., just north of Interstate 20, the peak stage was more than 6 feet higher than the estimated peak stage of the 0.2-percent (500-year) flood. Flood magnitudes in Cobb County on Sweetwater, Butler, and Powder Springs Creeks greatly exceeded the estimated 0.2-percent (500-year) floods for these streams. In Douglas County, the Dog River at Ga. Highway 5 near Fairplay had a peak stage nearly 20 feet higher than the estimated peak stage of the 0.2-percent (500-year) flood. On the Chattahoochee River, the U.S. Geological Survey (USGS) gage at Vinings reached the highest level recorded in the past 81 years. Gwinnett, De Kalb, Fulton, and Rockdale Counties also had record flooding.South Georgia March and April 2009 FloodsThe March and April 2009 floods in South Georgia were smaller in magnitude than the September floods but still caused significant damage. No lives were lost in this flood. Approximately $60 million in public infrastructure damage occurred to roads, culverts, bridges and a water treatment facility (Joseph T. McKinney, Federal Emergency Management Agency, written commun., July 2009). Flow at the Satilla River near Waycross, exceeded the 0.5-percent (200-year) flood. Flows at seven other stations in South Georgia exceeded the 1-percent (100-year) flood.

  13. Collaborative development of the EPICS Qt framework Phase I Final Report

    SciTech Connect

    Mayssat, Robert E.

    2015-01-15

    At Lyncean, a private company spun-off from technology developed at the SLAC National Lab, we have been using EPICS for over a decade. EPICS is ubiquitous on our flagship product – the Compact Light Source. EPICS is not only used to control our laser and accelerator systems, but also to control our x-ray beamlines. The goal of this SBIR is for Lyncean Technologies to spearhead a worldwide collaborative effort for the development of control system tools for EPICS using the Qt framework, a C++-based coding environment that could serve as a competitive alternative to the Java-based Control System Studio (CSS). This grant's Phase I, not unlike a feasibility study, is designed for planning and scoping the preparatory work needed for Phase II or other funding opportunities. The three main objectives of this Phase I are (1) to become better acquainted with the existing EPICS Qt software and Qt framework in order to evaluate the best options for ongoing development, (2) to demonstrate that our engineers can lead the EPICS community and jump-start the Qt collaboration, and (3) to identify a scope for our future work with solicited feedback from the EPICS community. This Phase I report includes key technical findings. It clarifies the differences between the two apparently-competing EPICS Qt implementations, caQtDM and the QE Framework; it explains how to create python-bindings, and compares Qt graphical libraries. But this report is also a personal story that narrates the birth of a collaboration. Starting a collaboration is not the work of a single individual, but the work of many. Therefore this report is also an attempt to publicly give credit to many who supported the effort. The main take-away from this grant is the successful birth of an EPICS Qt collaboration, seeded with existing software from the PSI and the Australian Synchrotron. But a lot more needs to be done for the collaboration founders' vision to be realized, and for the collaboration to reach its full

  14. User Instructions for the EPIC-3 Code.

    DTIC Science & Technology

    1987-05-01

    Johnson, G.R., D.D Colby, and D J Vavrick. "Three-Dimensional Computer Code for Dynamic Response of Solids to Intense Impulsive Loads." Internatiunal...A182 728 USER INSTRUCTIONS FOR THE EPIC-3 CODE (U) HONEYWELL INC 1/1 BROOKLYN PARK MN DEFENSE SYSTEMS DIV JOHNSON ET AL MAY 87 7-8B-6 AFATL-TR-87-iB...COed AFATL-TR-87-10 AD-A 182 728 User Instructions for the EPIC -3 Code G R Johnson R A Stryk HONEYWELL INCORPORATED DEFENSE SYSTEMS DIVISION 7225

  15. ET: EPICS TCL/TK interface

    SciTech Connect

    Daly, B.

    1995-02-01

    This document describes the tc1 command and command types which are used to communicate with EPICS database servers. The application libraries upon which et is built include tc1, tk, tc1-dp, and blt. The reader of this document is assumed to be familiar with tc1/tk.

  16. Reflections on the Epic Challenge, 1989

    ERIC Educational Resources Information Center

    Meiers, Marion

    2013-01-01

    In this article, Marion Meiers reflects on the often-cited address "Literacy: The Epic Challenge Beyond Progressivism" by Garth Boomer at the 1989 joint National Conference of the Australian Reading Association (now the Australian Literacy Educator's Association) and the Australian Association for the Teaching of English at Darin High…

  17. Education for Change: Epic Charter School

    ERIC Educational Resources Information Center

    EDUCAUSE, 2015

    2015-01-01

    The student-centered school model of Epic Charter School in Oakland, California, framed around a hero's journey empowers middle school students with sense of unity and purpose in life, where they can feel part of a culture with a shared experience and with more opportunities to experiences growth and accomplishment. Design and engineering is front…

  18. Declining longevity advantage and low birthweight in Okinawa.

    PubMed

    Hokama, Tomiko; Binns, Colin

    2008-10-01

    The prefecture of Okinawa is known for the longevity of its population, for 30 years it had the longest life expectancy of all prefectures in Japan. However this advantage was lost in 2000 and male longevity is now ranked 26th among the 47 prefectures of Japan. The aim of this study was to explore whether the recent decline in Okinawan life expectancy advantage is due to the cohort effect of low birthweight infants becoming middle- and older- aged Okinawans. This is an observational study using existing demographic and health statistics. Data on life expectancy, mortality and low birthweight rates were obtained from the Okinawan Prefectural Department of Health and Welfare and the Japanese Ministry of Health, Labour and Welfare. In the year 2000 the longevity advantage of Okinawan males over the Japanese mainland was lost and the relative life expectancy of females declines. The mortality ratio for heart disease has reversed showing a cohort effect, with younger Okinawans having higher death rates than those living in the rest of Japan. The low birthweight rate for Okinawa is 20% greater than mainland Japan. As the post World War cohort of low birthweight infants reaches middle age, the longevity advantage of Okinawans has been lost. The loss of the longevity advantage of Okinawa over the rest of Japan may be due to the increase in non-communicable disease in the post war cohort that has experienced a higher low birthweight rate.

  19. EPICS simulation tools for control system development

    SciTech Connect

    Wright, R.M.; Kerstiens, D.M.; Vaughn, G.D.; Weiss, R.E.

    1994-09-01

    When developing control system software there are many times when the ability to simulate the response of the instrumentation can be very useful. Examples are: (i) when the operator interface is being designed and the users want an idea of what the finished system might took like; (ii) when the interface hardware is not yet available; (iii) when the reaction of the control system to an error condition must be tested, but the actual occurrence of such an error would cause undesirable side effects; (iv) when operators are being trained to use the system; (v) when an improvement or bug fix needs to be tested, but the running system cannot be shut down for long. The Experimental Physics and Industrial Control System (EPICS) provides tools for building simple simulations and interfacing to more complex simulations of accelerator hardware. At the lowest level an individual data channel can be switched to take its input from either a simulated data location or from the actual hardware. At a slightly higher level, sequences can be run on the real-time interface processor so that output to the hardware is intercepted and an appropriate substitute value is provided for the corresponding read-back records. At a still higher level a program can use the Channel Access software bus facility of EPICS to control some global aspect of an accelerator or can interface to an external accelerator simulation instead of the actual accelerator. The goal of testing control system software using simulated hardware is to minimize the changes required in shifting between the simulated system and the real system. The degree of success of the EPICS tools in meeting the minimum change goal will be addressed with suggestions for improvements. The implementation of simulated responses using EPICS tools will be discussed and examples of experience using the EPICS tools to create and interface to simulations will be given.

  20. The Battle of Okinawa, 1945: Final Turning Point in the Pacific.

    ERIC Educational Resources Information Center

    Tzeng, Megan

    2000-01-01

    Reviews the last major battle of World War II that occurred at Okinawa (Japan) in 1945. Explains why the Battle of Okinawa was the turning point in World War II. Includes two maps in the appendix and an annotated bibliography. (CMK)

  1. International Collaboration and the Management of Linguistic Resources at a Diaspora Festival in Okinawa

    ERIC Educational Resources Information Center

    Petrucci, Peter R.; Miyahira, Katsuyuki

    2009-01-01

    This article uses Jernudd and Neustupny's (1987) theory of language management to address the planning, management and distribution of linguistic resources at the 4th Worldwide Uchinaanchu Festival (WUF), a diaspora festival held in Okinawa, Japan. WUF organizers--from Okinawa and diaspora communities abroad--were concerned with both international…

  2. Addition of a Hydrological Cycle to the EPIC Jupiter Model

    NASA Astrophysics Data System (ADS)

    Dowling, T. E.; Palotai, C. J.

    2002-09-01

    We present a progress report on the development of the EPIC atmospheric model to include clouds, moist convection, and precipitation. Two major goals are: i) to study the influence that convective water clouds have on Jupiter's jets and vortices, such as those to the northwest of the Great Red Spot, and ii) to predict ammonia-cloud evolution for direct comparison to visual images (instead of relying on surrogates for clouds like potential vorticity). Data structures in the model are now set up to handle the vapor, liquid, and solid phases of the most common chemical species in planetary atmospheres. We have adapted the Prather conservation of second-order moments advection scheme to the model, which yields high accuracy for dealing with cloud edges. In collaboration with computer scientists H. Dietz and T. Mattox at the U. Kentucky, we have built a dedicated 40-node parallel computer that achieves 34 Gflops (double precision) at 74 cents per Mflop, and have updated the EPIC-model code to use cache-aware memory layouts and other modern optimizations. The latest test-case results of cloud evolution in the model will be presented. This research is funded by NASA's Planetary Atmospheres and EPSCoR programs.

  3. The success and the future of EPICS

    SciTech Connect

    Thuot, M.E., Dalesio, L.R.; Clausen, M.; Katoh, T.

    1996-09-01

    During the past 5 years, the control system software toolkit EPICS (Experimental Physics and Industrial Control System) has developed from a small code co-development effort between LANL and ANL into an international collaboration on real-time distributed control system (for an accelerator facility, etc.). The wide application of this set of tools is the result of a combination of high performance, scaleable distributed control, and well defined open interfaces between system layers that encourage users to add extensions. These extensions can subsequently be reused by others, adding to the utility of the tools. This paper describes the architectural features that have supported these extensions, some of the new extensions produced by the 58 projects currently using EPICS and some of the new functions and interfaces being planned to be added to this control system toolkit.

  4. The success and the future of EPICS

    SciTech Connect

    M.E. Thuot; M. Clausen; L.R. Dalesio; T. Katoh; M.R. Kraimer; R. Mueller; H. Shoaee; W.A. Watson

    1996-08-01

    During the past five years, the control system software toolkit called EPICS (Experimental Physics and Industrial Control System), has developed from a comparatively small code co-development effort between Los Alamos National Laboratory and Argonne National Laboratory into an international collaboration on real-time distributed control systems. The wide application of this set of tools is the result of a combination of high performance, scaleable distributed control and well defined open interfaces between system layers that encourage users to add extensions. These extensions can subsequently be reused by others, adding to the utility of the tools. This paper will describe the architectural features that have supported these extensions, some of the new extensions produced by the 58 projects currently using EPICS and some of the new functions and interfaces we are planning to add to this control system toolkit.

  5. Investigating the effect of hydrothermal conditions on the subvent biosphere of the Okinawa backarc basin

    NASA Astrophysics Data System (ADS)

    Brandt, L. D.; House, C. H.; Nunoura, T.; Yanagawa, K.

    2013-12-01

    IODP Expedition 331 to the Okinawa backarc basin provided an opportunity to study an interesting subset of the ocean floor -- the subsurface environment surrounding an active hydrothermal vent. The subsurface sediments of the Iheya North Field within the mid-Okinawa trough are affected by high temperature fluids. In addition, the Okinawa backarc basin is situated on a continental margin. This particular environment has a unique set of conditions for investigating the vertical variability in microbial communities with depth as conditions become increasingly restrictive. IODP Expedition 331 Site C0014, located 450 m east of the active vent, has a surface temperature of 5°C and has no evidence of hydrothermal alteration. Temperature increases with depth at an estimated rate of 3°C/m. Below a depth of ~10 mbsf, the sedimentary sequence is hydrothermally altered to a pale, gray clay with alteration products illite and montmorillonite. Thus, Site C0014 represents an ideal location to characterize whether 1) the microbial community structure shifts from non-hydrothermal margin microorganisms toward a more temperature-adapted group of microorganisms, or 2) repeating clades represented throughout the sediment column are seemingly adapting to the increasingly extreme conditions. DNA from sediments (0-44 mbsf) was extracted using a modified protocol from the MoBio PowerSoil DNA Isolation kit. Primers were designed to amplify the V6-V9 region of the 16S rRNA gene. Select samples were sequenced with the Roche 454 FLX sequencer at The Pennsylvania State University. The amplicon data suggest that the subvent biosphere resides in the top 12-14 meters below seafloor (mbsf). The archaeal sequences abruptly disappear beyond the 14 mbsf horizon. The phylum Euryarchaeota, dominated by Deep Sea Hydrothermal Vent Group 6 (DHVEG-6) and ANME-1, are present throughout the top 14 meters. However, there is an increasingly stronger signal of non-Euryarchaeota clades Marine Crenarchaeotic

  6. EPICS: Experimental Physics and Industrial Control System

    NASA Astrophysics Data System (ADS)

    Epics Development Team

    2013-02-01

    EPICS is a set of software tools and applications developed collaboratively and used to create distributed soft real-time control systems for scientific instruments such as particle accelerators and telescopes. Such distributed control systems typically comprise tens or even hundreds of computers, networked together to allow communication between them and to provide control and feedback of the various parts of the device from a central control room, or even remotely over the internet. EPICS uses Client/Server and Publish/Subscribe techniques to communicate between the various computers. A Channel Access Gateway allows engineers and physicists elsewhere in the building to examine the current state of the IOCs, but prevents them from making unauthorized adjustments to the running system. In many cases the engineers can make a secure internet connection from home to diagnose and fix faults without having to travel to the site. EPICS is used by many facilities worldwide, including the Advanced Photon Source at Argonne National Laboratory, Fermilab, Keck Observatory, Laboratori Nazionali di Legnaro, Brazilian Synchrotron Light Source, Los Alamos National Laboratory, Australian Synchrotron, and Stanford Linear Accellerator Center.

  7. EPICS Version 4 - Implementing Complex Data Types

    SciTech Connect

    Marty Kraimer,; John dalesio

    2012-11-27

    Through phase 1 and phase 2 SBIR grants, s fully functional I/O Controller and communication protocol for version 4 of EPICS is completed. This new software architecture provides a flexible and extendible architecture. Version 4 is implemented fully in Java. The performance metrics look promising. The final portion of phase 2 is to optimize the communication mechanisms. Subsequent work on different aspects of this are required to provide a viable solutions in various areas. Version 3 of EPICS is able to provide a platform for implementing channel based control, because the channel and attributes for time stamping, alarm, display and control were narrow, well defined, and complete. To extend EPICS functionality beyond this, it is necessary to define attributes needed for archive data, array, image data, and directory services. The proper handling of several array types enables the development of middle layer servers such as orbit and bump control in accelerators. Phase 1 should produce a well defined, reviewed, and agreed upon definition of the metadata required for these services. A Phase 2 grant would provide tools that implemented archiving, general array, imaging, and directory applications.

  8. Simulating soil C dynamics with EPIC: Model description and testing against long-term data

    SciTech Connect

    Izaurralde, R Cesar C.; Williams, Jimmy R.; Mcgill, William B.; Rosenberg, Norman J.; Quiroga Jakas, Maria C.

    2006-01-01

    Soil carbon sequestration (SCS) has emerged as a technology with significant potential to help stabilize atmospheric CO2 concentrations and thus reduce the threat of global warming. Methods and models are needed to evaluate and recommend SCS practices based on their effects on carbon dynamics and environmental quality. EPIC (Environment Policy Integrated Climate) is a widely used and tested model for simulating many agroecosystem processes including plant growth, crop yield, tillage, wind and water erosion, runoff, soil density, and leaching. Here we describe new C and N modules developed in EPIC built on concepts from the Century model to connect the simulation of soil C dynamics to crop management, tillage methods, and erosion processes. The added C and N routines interact directly with soil moisture, temperature, erosion, tillage, soil density, leaching, and translocation functions in EPIC. Equations were also added to describe the effects of soil texture on soil C stabilization. Lignin concentration is modeled as a sigmoidal function of plant age. EPIC was tested against data from a Conservation Reserve Program (CRP) 6-yr experiment at five sites in three U.S. Great Plains states and a 61-y long-term agronomic experiment in Canada. Mean Square Deviations (MSD) calculated for CRP sites were less than 0.01 kg C2 m2, except for one site where it reached 0.025 kg2 C2 m. MSD values in the 61-y experiment ranged between 0.047 and 0.077 kg C2 m2. In conclusion, the version of the EPIC model presented and tested here contains the necessary algorithms to simulate SCS and improve understanding of the interactions among soil erosion, C dynamics, and tillage. A strength of the model as tested is its ability to explain the variability in crop production, C inputs and SOC and N cycling over a wised range soil, cropping and climatic conditions over periods from 6 to 61 years. For example, at the Breton site over 61 years, EPIC accounted for 69% of the variability in grain

  9. High-resolution MIRU-VNTRs typing reveals the unique nature of Mycobacterium tuberculosis Beijing genotype in Okinawa, Japan.

    PubMed

    Millet, Julie; Miyagi-Shiohira, Chika; Yamane, Nobuhisa; Mokrousov, Igor; Rastogi, Nalin

    2012-06-01

    Mycobacterium tuberculosis Beijing lineage is highly prevalent in Japan. The aim of the present study was to describe the population structure of the Beijing lineage in this country based on 12-, 15-, and 21-loci MIRU-VNTR genotyping schemes. The MIRU-VNTR patterns of Beijing strains from Okinawa, Ryukyu Islands were compared to those recently published from the Osaka-Kobe megalopolis of the main island of Japan, Honshu (Wada et al., 2009). We also compared proportions of "modern/typical" vs. "ancient/atypical" Beijing strains as defined by structure of the NTF locus. Contrarily to the 12-loci Minimum Spanning Tree (MST), the 15- and 21-loci trees allowed the distinction of two groups of strains in Okinawa. A 12-loci MIRU-VNTR pattern (223325173533) corresponding to MIRU international type MIT17 was identified as the most prevalent Beijing genotype in Japan. In the SITVIT2 database, this pattern was found to be disseminated worldwide and corresponded to the most widely distributed Beijing profile in East Asia and former USSR countries. A comparison of 15- and 21-loci MIRU-VNTR patterns showed that two loci (QUB-4156 and Mtub21) were most polymorphic in our study, and could be potential candidates to distinguish between NTF locus based subclassification of Beijing strains. High-resolution VNTR typing using 15- and 21-loci underlined an evolutionarily distinct "ancient/atypical" subpopulation of the Beijing genotype in Okinawa as well as a subgroup of strains closely related to "modern/typical" Beijing strains observed in Osaka/Kobe.

  10. Modular Curriculum: English. Comparative Literature: The Epic Tradition.

    ERIC Educational Resources Information Center

    Watkins, Barbara; Wiley, Shirley

    This independent course of study is designed to be completed within a one-year period. The course centers on the epic tradition, analyzing several well-known epics and comparing them from a critic's point of view. It is emphasized that many aspects of the course involve questions for which there are no ready answers. The introductions following…

  11. Reweaving the Fabric of Rural Vermont: The EPIC Project.

    ERIC Educational Resources Information Center

    Richardson, Jean

    1998-01-01

    A Vermont project, the Environmental Programs/Partnerships in Communities (EPIC) project provides a transferable model for rural development. The program is sensitive to people and environmental needs, and emphasizes long-term functioning of the entire community system, not just specific outcomes. EPIC has supported leadership training, local…

  12. AN OVERVIEW OF THE EPA ENVIRONMENTAL PHOTOGRAPHIC INTERPRETATION CENTER (EPIC)

    EPA Science Inventory



    The EPA Environmental Photographic Interpretation Center (EPIC) supports the EPA Regions and Program Offices with remote sensing based technical support and research and development products. Since 1972, EPIC has provided both imagery and imagery-derived products to the E...

  13. AN OVERVIEW OF EPA ENVIRONMENTAL PHOTOGRAPHIC INTERPRETATION CENTER (EPIC)

    EPA Science Inventory



    The EPA Environmental Photographic Interpretation Center (EPIC) supports the EPA Regions and Program Offices with remote sensing based technical support and research and development products. Since 1972, EPIC has provided both imagery and imagery-derived products to the E...

  14. Perfusion Electronic Record Documentation Using Epic Systems Software.

    PubMed

    Riley, Jeffrey B; Justison, George A

    2015-12-01

    The authors comment on Steffens and Gunser's article describing the University of Wisconsin adoption of the Epic anesthesia record to include perfusion information from the cardiopulmonary bypass patient experience. We highlight the current-day lessons and the valuable quality and safety principles the Wisconsin-Epic model anesthesia-perfusion record provides.

  15. The EPIC Leadership Development Program Evaluation Report. Research Brief

    ERIC Educational Resources Information Center

    New Leaders for New Schools (NJ1), 2011

    2011-01-01

    New Leaders for New Schools created the Effective Practice Incentive Community (EPIC) initiative in 2006 to learn from educators driving achievement gains in high-need urban schools. EPIC identifies school leaders and teachers whose students are making significant achievement gains and financially rewards these educators in exchange for sharing…

  16. Evaluation Report: The EPIC Leadership Development Model and Pilot Programs

    ERIC Educational Resources Information Center

    New Leaders (NJ1), 2011

    2011-01-01

    New Leaders created the Effective Practice Incentive Community (EPIC) initiative in 2006 to learn from educators driving achievement gains in high-need urban schools. EPIC identifies school leaders and teachers whose students are making significant achievement gains and financially rewards these educators in exchange for sharing and documenting…

  17. EPIC and APEX: Model use, calibration, and validation

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Environmental Policy Integrated Climate (EPIC) and Agricultural Policy/Environmental eXtender (APEX) models have been developed to assess a wide variety of agricultural water resource, water quality, and other environmental problems. The EPIC model is designed to be applied at a field-scale leve...

  18. Detection and phylogenetic analysis of hepatitis E viruses from mongooses in Okinawa, Japan.

    PubMed

    Nidaira, Minoru; Takahashi, Kazuaki; Ogura, Go; Taira, Katsuya; Okano, Shou; Kudaka, Jun; Itokazu, Kiyomasa; Mishiro, Shunji; Nakamura, Masaji

    2012-12-01

    Hepatitis E virus (HEV) infection has previously been reported in wild mongooses on Okinawa Island; to date however, only one HEV RNA sequence has been identified in a mongoose. Hence, this study was performed to detect HEV RNA in 209 wild mongooses on Okinawa Island. Six (2.9%) samples tested positive for HEV RNA. Phylogenetic analysis revealed that 6 HEV RNAs belonged to genotype 3 and were classified into groups A and B. In group B, mongoose-derived HEV sequences were very similar to mongoose HEV previously detected on Okinawa Island, as well as to those of a pig. This investigation emphasized the possibility that the mongoose is a reservoir animal for HEV on Okinawa Island.

  19. Child Development in Okinawa Compared with Tokyo and Denver, and the Implications for Developmental Screening.

    ERIC Educational Resources Information Center

    Ueda, Reiko

    1978-01-01

    Developmental differences in the Denver Developmental Screening Test items were demonstrated between samples of children from Okinawa (n=615) and Tokyo (n=1171), who were 16 days to 6 years old. Journal availability: see EC 112 661. (Author)

  20. A MySQL Based EPICS Archiver

    SciTech Connect

    Christopher Slominski

    2009-10-01

    Archiving a large fraction of the EPICS signals within the Jefferson Lab (JLAB) Accelerator control system is vital for postmortem and real-time analysis of the accelerator performance. This analysis is performed on a daily basis by scientists, operators, engineers, technicians, and software developers. Archiving poses unique challenges due to the magnitude of the control system. A MySQL Archiving system (Mya) was developed to scale to the needs of the control system; currently archiving 58,000 EPICS variables, updating at a rate of 11,000 events per second. In addition to the large collection rate, retrieval of the archived data must also be fast and robust. Archived data retrieval clients obtain data at a rate over 100,000 data points per second. Managing the data in a relational database provides a number of benefits. This paper describes an archiving solution that uses an open source database and standard off the shelf hardware to reach high performance archiving needs. Mya has been in production at Jefferson Lab since February of 2007.

  1. Descriptive analysis of the prevalence and the molecular epidemiology of Mycobacterium avium complex-infected pigs that were slaughtered on the main island of Okinawa.

    PubMed

    Hibiya, K; Kazumi, Y; Nishiuchi, Y; Sugawara, I; Miyagi, K; Oda, Y; Oda, E; Fujita, J

    2010-09-01

    Recent genetic studies have revealed that several epidemiological factors affect Mycobacterium avium complex (MAC) infection in pig populations. However, mechanisms underlying the spread of MAC infection among hog farms have not been clarified. In consideration of this situation, we cross-sectionally investigated the mechanisms underlying the spread of MAC on the island of Okinawa. Pigs slaughtered (n=706,763) and 331 hog farms on Okinawa were surveyed during the years 2002-2004. Two outbreaks of MAC infection were occurred in several farms during survey period. Bacteria were isolated from randomly selected pigs and genotype of isolates was determined by using genetic finger printing methods with the insertion sequence (IS) 1245 restriction fragment length polymorphism (RFLP). Most isolates had large numbers of IS1245 copies, while strains with low copy numbers of IS1245 and isolates without IS1245 were seen in few farms. MACs strains were repeatedly isolated from pigs of the affected farms during the survey period. Those farms with an identical pig rearing systems showed synchronic changes in the prevalence of MAC infection. An industrial farm without an outbreak had an independent pig flow, but maintained distinct MAC strains. Multivariate analysis did not reveal independent factors for the prevalence of the MAC infection. These findings suggest that there were three clusters distinguished genetically in the main island of Okinawa, which were potentially spread by common pig flow. However, the outbreaks occurred because of unspecified conditions on each farm environment.

  2. Association between Helicobacter pylori Virulence Factors and Gastroduodenal Diseases in Okinawa, Japan

    PubMed Central

    Matsunari, Osamu; Shiota, Seiji; Suzuki, Rumiko; Watada, Masahide; Kinjo, Nagisa; Murakami, Kazunari; Fujioka, Toshio; Kinjo, Fukunori

    2012-01-01

    The incidence of gastric cancer in Okinawa is lowest in Japan. Some previous reports using small number of strains suggested that the high prevalence of Helicobacter pylori with Western-type cagA in Okinawa compared to other areas in Japan might contribute to the low incidence of gastric cancer. It has still not been confirmed why the prevalence of Western-type cagA strains is high in Okinawa. We examined the association between the virulence factors of H. pylori and gastroduodenal diseases in Okinawa. The genotypes of cagA and vacA of 337 H. pylori strains were determined by PCR and gene sequencing. The genealogy of these Western-type cagA strains in Okinawa was analyzed by multilocus sequence typing (MLST). Overall, 86.4% of the strains possessed cagA: 70.3% were East-Asian type and 16.0% were Western type. After adjustment by age and sex, the presence of East-Asian-type cagA/vacA s1m1 genotypes was significantly associated with gastric cancer compared to gastritis (odds ratio = 6.68, 95% confidence interval = 1.73 to 25.8). The structure of Western-type CagA in Okinawa was different from that of typical Western-type CagA found in Western countries. Intriguingly, MLST analysis revealed that the majority of Western-type cagA strains formed individual clusters but not hpEurope. Overall, low prevalence of gastric cancer in Okinawa may result from the high prevalence of non-East-Asian-type cagA strains. The origin of Western-type cagA strains in Okinawa may be different from those of Western countries. PMID:22189111

  3. Association between Helicobacter pylori virulence factors and gastroduodenal diseases in Okinawa, Japan.

    PubMed

    Matsunari, Osamu; Shiota, Seiji; Suzuki, Rumiko; Watada, Masahide; Kinjo, Nagisa; Murakami, Kazunari; Fujioka, Toshio; Kinjo, Fukunori; Yamaoka, Yoshio

    2012-03-01

    The incidence of gastric cancer in Okinawa is lowest in Japan. Some previous reports using small number of strains suggested that the high prevalence of Helicobacter pylori with Western-type cagA in Okinawa compared to other areas in Japan might contribute to the low incidence of gastric cancer. It has still not been confirmed why the prevalence of Western-type cagA strains is high in Okinawa. We examined the association between the virulence factors of H. pylori and gastroduodenal diseases in Okinawa. The genotypes of cagA and vacA of 337 H. pylori strains were determined by PCR and gene sequencing. The genealogy of these Western-type cagA strains in Okinawa was analyzed by multilocus sequence typing (MLST). Overall, 86.4% of the strains possessed cagA: 70.3% were East-Asian type and 16.0% were Western type. After adjustment by age and sex, the presence of East-Asian-type cagA/vacA s1m1 genotypes was significantly associated with gastric cancer compared to gastritis (odds ratio = 6.68, 95% confidence interval = 1.73 to 25.8). The structure of Western-type CagA in Okinawa was different from that of typical Western-type CagA found in Western countries. Intriguingly, MLST analysis revealed that the majority of Western-type cagA strains formed individual clusters but not hpEurope. Overall, low prevalence of gastric cancer in Okinawa may result from the high prevalence of non-East-Asian-type cagA strains. The origin of Western-type cagA strains in Okinawa may be different from those of Western countries.

  4. Gravity Inversion with Geological Modeling Constraint and Its Application in the Okinawa Trough

    NASA Astrophysics Data System (ADS)

    Zhang, S.

    2014-12-01

    The satellite altimetry gravity data is used to recover the 3D distribution of oceanic lithosphere density in the Okinawa Trough and its neighbor region. It's difficult to use only gravity data to invert complex geological structure and density distribution by 3D gravity Inversion method. In order to improve the vertical resolution of the density inversion result, 3D geological modeling method is used to build structural model for the inversion, prior constraint conditions can be applied to solve the non-unique problem. In the Okinawa Trough, it is proved by earthquake data that the Philippine plate dives beneath the Okinawa Trough, which result in the upwelling of mantel material and decrease of the crust thickness. The Benioff zone clearly shows the plate's subduction parameter, such as direction, dip, transformation. Therefore, a structural subduction model is created by geological modeling method and works as the initial model and as constraint condition in gravity inversion. The 3D gravity inversion result and seismology CMT data are both used to explain the oceanic lithosphere structure in the Okinawa Trough. The inversion result illustrates high density anomaly under the Okinawa Trough. Affected by small scale mantle convections, the continental lithosphere is separated, which result in the spreading of back-arc basin and the formation of the Okinawa Trough.

  5. [Basic study on wartime reminiscences of older adults in Okinawa].

    PubMed

    Yoshikawa, Maiko; Tanaka, Kanji

    2004-08-01

    This study investigated retrospectively the thoughts people had of World War II, especially the Battle of Okinawa at that time, and their current evaluation of their own wartime experience. A questionnaire survey was conducted, and 217 older adults, 114 women and 103 men between 65 and 88 years old, participated. Results indicated that men generally had more negative feelings than women at the end of the war. And psychological damages caused by traumatic war memories seemed to have persisted in not a few individuals in spite of over half a century since the end of the war. However, others had been more positive and accepting toward their wartime experiences. This difference appeared to be related to qualitative differences of various experiences, as well as the person's age. It is argued that a vigorous approach will be necessary for this sort of study of Japanese war victims from a number of viewpoints.

  6. Typhoon damage on a shallow mesophotic reef in Okinawa, Japan

    PubMed Central

    Ohara, Taku; Fujii, Takuma; Kawamura, Iori; Mizuyama, Masaru; Montenegro, Javier; Shikiba, Haruka; Naruse, Tohru; McClelland, TY; Denis, Vianney; Reimer, James D.

    2013-01-01

    Little is known about effects of large storm systems on mesophotic reefs. This study reports on how Typhoon 17 (Jelawat) affected Ryugu Reef on Okinawa-jima, Japan in September 2012. Benthic communities were surveyed before and after the typhoon using line intercept transect method. Comparison of the benthic assemblages showed highly significant differences in coral coverage at depths of 25–32 m before and after Typhoon 17. A large deep stand of Pachyseris foliosa was apparently less resistant to the storm than the shallower high diversity area of this reef. Contradictory to common perception, this research shows that large foliose corals at deeper depths are just as susceptible to typhoon damage as shallower branching corals. However, descriptive functional group analyses resulted in only minor changes after the disturbance, suggesting the high likelihood of recovery and the high resilience capacity of this mesophotic reef. PMID:24032094

  7. EPICS Channel Access Server for LabVIEW

    SciTech Connect

    Zhukov, Alexander P.

    2016-10-01

    It can be challenging to interface National Instruments LabVIEW (http://www.ni.com/labview/) with EPICS (http://www.aps.anl.gov/epics/). Such interface is required when an instrument control program was developed in LabVIEW but it also has to be part of global control system. This is frequently useful in big accelerator facilities. The Channel Access Server is written in LabVIEW, so it works on any hardware/software platform where LabVIEW is available. It provides full server functionality, so any EPICS client can communicate with it.

  8. ORAL PRESENTATION:EPA'S ENVIRONMENTAL PHOTOGRAPHIC INTERPRETATION CENTER (EPIC)

    EPA Science Inventory

    This presentation provides an overview of the remote sensing technical support and research and development activities of the Environmental Photographic Interprettion Center (EPIC). It is the basis for a presentation given at the EPA's Office of Acquisition Management's Annual C...

  9. Students Speak With Gary Cox, EPIC Project Manager

    NASA Video Gallery

    From NASA’s International Space Station Mission Control Center Gary Cox EPIC Project Manager, participates in a Digital Learning Network (DLN) event with students at South Effingham Middle School...

  10. Compilation of a standardised international folate database for EPIC.

    PubMed

    Nicolas, Geneviève; Witthöft, Cornelia M; Vignat, Jérôme; Knaze, Viktoria; Huybrechts, Inge; Roe, Mark; Finglas, Paul; Slimani, Nadia

    2016-02-15

    This paper describes the methodology applied for compiling an "international end-user" folate database. This work benefits from the unique dataset offered by the European Prospective Investigation into Cancer and Nutrition (EPIC) (N=520,000 subjects in 23 centres). Compilation was done in four steps: (1) identify folate-free foods then find folate values for (2) folate-rich foods common across EPIC countries, (3) the remaining "common" foods, and (4) "country-specific" foods. Compiled folate values were concurrently standardised in terms of unit, mode of expression and chemical analysis, using information in national food composition tables (FCT). 43-70% total folate values were documented as measured by microbiological assay. Foods reported in EPIC were either matched directly to FCT foods, treated as recipes or weighted averages. This work has produced the first standardised folate dataset in Europe, which was used to calculate folate intakes in EPIC; a prerequisite to study the relation between folate intake and diseases.

  11. Experience with EPICS in a wide variety of applications

    SciTech Connect

    Kraimer, M.R.; Clausen, M.; Lupton, W.; Watson, C.

    1997-08-01

    Currently more than 70 organizations have obtained permission to use the Experimental Physics and Industrial Control System (EPICS), a set of software packages for building real-time control systems. In this paper representatives from four of these sites discuss the reasons their sites chose EPICS, provide a brief discussion of their control system development, and discuss additional control system tools obtained elsewhere or developed locally.

  12. Aerosol Retrieval and Atmospheric Correction Algorithms for EPIC

    NASA Technical Reports Server (NTRS)

    Wang, Yujie; Lyapustin, Alexei; Marshak, Alexander; Korkin, Sergey; Herman, Jay

    2011-01-01

    EPIC is a multi-spectral imager onboard planned Deep Space Climate ObserVatoRy (DSCOVR) designed for observations of the full illuminated disk of the Earth with high temporal and coarse spatial resolution (10 km) from Lagrangian L1 point. During the course of the day, EPIC will view the same Earth surface area in the full range of solar and view zenith angles at equator with fixed scattering angle near the backscattering direction. This talk will describe a new aerosol retrieval/atmospheric correction algorithm developed for EPIC and tested with EPIC Simulator data. This algorithm uses the time series approach and consists of two stages: the first stage is designed to periodically re-initialize the surface spectral bidirectional reflectance (BRF) on stable low AOD days. Such days can be selected based on the same measured reflectance between the morning and afternoon reciprocal view geometries of EPIC. On the second stage, the algorithm will monitor the diurnal cycle of aerosol optical depth and fine mode fraction based on the known spectral surface BRF. Testing of the developed algorithm with simulated EPIC data over continental USA showed a good accuracy of AOD retrievals (10-20%) except over very bright surfaces.

  13. Real-Time performance measurements of EPICS IOCcore.

    SciTech Connect

    Xu, S.; Kraimer, M. R.; Accelerator Systems Division

    2005-01-01

    As the Experimental Physics and Industrial Control System (EPICS) is used in an increasing number of accelerator control systems, EPICS IOCcore is ported to a wider variety of OS platforms and thus the performance of EPICS IOCcore on different hardware and software platforms becomes more important. This paper provides real-time performance measurements of EPICS IOCcore on a VME hardware platform and on three different OS platforms: vxWorks, RTEMS, and Linux. EPICS Input/Output Controller core (IOCcore) software has been ported to several different operating systems (OSs) and many hardware platforms. This paper compares the EPICS IOCcore runtime performance on one hardware platform (MVME2100 PowerPC) and three popular Operating Systems: vxWorks, RTEMS, and Linux. For Linux the following versions were tested: Linux 2.4.2 hard hat 2.0, standard Linux 2.4.30, and Linux 2.6.13. For Linux 2.6.13, the kernel was built both preemptive and non-preemptive. Three real-time parameters are measured: interrupt, context switch, and total response latency. On Linux, more detailed interrupt latencies are measured: interrupt top half to bottom half, and interrupt bottom half to user space interrupt service routine. To implement the tests, several software components were developed. In order to port to other operating systems or hardware platforms only, one component has to be implemented.

  14. Marine Subsurface Microbial Communities Across a Hydrothermal Gradient in Okinawa Trough Sediments

    NASA Astrophysics Data System (ADS)

    Brandt, L. D.; Hser Wah Saw, J.; Ettema, T.; House, C. H.

    2015-12-01

    IODP Expedition 331 to the Okinawa backarc basin provided an opportunity to study the microbial stratigraphy within the sediments surrounding a hydrothermal vent. The Okinawa backarc basin is a sedimented region of the seafloor located on a continental margin, and also hosts a hydrothermal network within the subsurface. Site C0014 within the Iheya North hydrothermal field is located 450 m east of the active vent and has a surface temperature of 5°C with no evidence of hydrothermal alteration within the top 10 meters below sea floor (mbsf). Temperature increases with depth at an estimated rate of 3°C/m and transitions from non-hydrothermal margin sediments to a hydrothermally altered regime below 10 mbsf. In this study, we utilized deep 16S rRNA sequencing of DNA from IODP Expedition 331 Site C0014 sediment horizons in order to assess diversity throughout the sediment column as well as determine the potential limits of the biosphere. Analysis of the amplicon data shows a shift over 15 mbsf from a heterogeneous community of cosmopolitan marine subsurface taxa toward an archaeal-dominated community in the deepest horizons of the predicted biosphere. Notably, the phylum Chloroflexi represents a substantial taxon through most horizons, where it appears to be replaced below 10 mbsf by punctuations of thermophilic and methanotrophic Archaea and Miscellaneous Crenarchaeotic Group abundances. DNA from the aforementioned transition horizons was further analyzed using metagenomic sequencing. Preliminary taxonomic analysis of the metagenomic data agrees well with amplicon data in capturing the shift in relative abundance of Archaea increasing with depth. Additionally, reverse gyrase, a gene found exclusively in hyperthermophilic microorganisms, was recovered only in the metagenome of the deepest horizon. A BLAST search of this protein sequence against the GenBank non-redudnant protein database produced top hits with reverse gyrase from Thermococcus and Pyrococcus, which are

  15. Molecular epidemiological study of mumps epidemics of 2015 in Okinawa, Japan.

    PubMed

    Kuba, Yumani; Kyan, Hisako; Arakaki, Eri; Takara, Taketoshi; Kato, Takashi; Okano, Sho; Oshiro, Yuko; Kudaka, Jun; Kidokoro, Minoru

    2016-12-22

    In Okinawa Prefecture in Japan, although major mumps epidemics have occurred every 4-5 years, no laboratory diagnoses have been conducted. The mumps epidemic spread in Okinawa from October 2014, and we collected clinical materials from 31 mumps patients in 4 areas (Hokubu, Nanbu, Miyako and Yaeyama) from July to December 2015 for virus isolation and RT-PCR, whose positive ratios were 52% and 87%, respectively. The phylogenetic analyses showed that all isolates were classified into genotype G, most of which, except for 1, consisted of two subgenotypes, Ge (55.6%) and Gw (40.7%), which have been prominent in Japan recently. One isolate was classified into another lineage, which was first detected in Japan, and was similar to the Hong Kong isolate in 2014. Remarkably, the geographic distributions of the two major lineages were separated, namely, the Ge viruses were isolated from the main island of Okinawa, and the Yaeyama Islands, while the Gw isolates were mainly detected from the Miyako Islands. These results suggest that Ge and Gw mumps viruses mainly caused the mumps epidemics of 2015 in Okinawa, and they spread independently in separate regions. This is the first report describing the molecular epidemiological studies of mumps epidemics in Okinawa Prefecture.

  16. Effect of introduction of a new electronic anesthesia record (Epic) system on the safety and efficiency of patient care in a gastrointestinal endoscopy suite-comparison with historical cohort

    PubMed Central

    Goudra, B; Singh, PM; Borle, A; Gouda, G

    2016-01-01

    Background: Use of electronic medical record systems has increased in the recent years. Epic is one such system gaining popularity in the USA. Epic is a private company, which invented the electronic documentation system adopted in our hospital. In spite of many presumed advantages, its use is not critically analyzed. Some of the perceived advantages are increased efficiency and protection against litigation as a result of accurate documentation. Materials and Methods: In this study, retrospective data of 305 patients who underwent endoscopic retrograde cholangiopancreatography (wherein electronic charting was used - “Epic group”) were compared with 288 patients who underwent the same procedure with documentation saved on a paper chart (“paper group”). Time of various events involved in the procedure such as anesthesia start, endoscope insertion, endoscope removal, and transfer to the postanesthesia care unit were routinely documented. From this data, the various time durations were calculated. Results: Both “anesthesia start to scope insertion” times and “scope removal to transfer” times were significantly less in the Epic group compared to the paper group. Use of Epic system led to a saving of 4 min of procedure time per patient. However, the mean oxygen saturation was significantly less in the Epic group. Conclusion: In spite of perceived advantages of Epic documentation system, significant hurdles remain with its use. Although the system allows seamless flow of patients, failure to remove all artifacts can lead to errors and become a source of potential litigation hazard. PMID:27051360

  17. Marine Subsurface Microbial Community Shifts Across a Hydrothermal Gradient in Okinawa Trough Sediments.

    PubMed

    Brandt, Leah D; House, Christopher H

    2016-01-01

    Sediments within the Okinawa back-arc basin overlay a subsurface hydrothermal network, creating intense temperature gradients with sediment depth and potential limits for microbial diversity. We investigated taxonomic changes across 45 m of recovered core with a temperature gradient of 3°C/m from the dynamic Iheya North Hydrothermal System. The interval transitions sharply from low-temperature marine mud to hydrothermally altered clay at 10 meters below seafloor (mbsf). Here, we present taxonomic results from an analysis of the 16S rRNA gene that support a conceptual model in which common marine subsurface taxa persist into the subsurface, while high temperature adapted archaeal taxa show localized peaks in abundances in the hydrothermal clay horizons. Specifically, the bacterial phylum Chloroflexi accounts for a major proportion of the total microbial community within the upper 10 mbsf, whereas high temperature archaea (Terrestrial Hot Spring Crenarchaeotic Group and methanotrophic archaea) appear in varying local abundances in deeper, hydrothermal clay horizons with higher in situ temperatures (up to 55°C, 15 mbsf). In addition, geochemical evidence suggests that methanotrophy may be occurring in various horizons. There is also relict DNA (i.e., DNA preserved after cell death) that persists in horizons where the conditions suitable for microbial communities have ceased.

  18. Marine Subsurface Microbial Community Shifts Across a Hydrothermal Gradient in Okinawa Trough Sediments

    PubMed Central

    2016-01-01

    Sediments within the Okinawa back-arc basin overlay a subsurface hydrothermal network, creating intense temperature gradients with sediment depth and potential limits for microbial diversity. We investigated taxonomic changes across 45 m of recovered core with a temperature gradient of 3°C/m from the dynamic Iheya North Hydrothermal System. The interval transitions sharply from low-temperature marine mud to hydrothermally altered clay at 10 meters below seafloor (mbsf). Here, we present taxonomic results from an analysis of the 16S rRNA gene that support a conceptual model in which common marine subsurface taxa persist into the subsurface, while high temperature adapted archaeal taxa show localized peaks in abundances in the hydrothermal clay horizons. Specifically, the bacterial phylum Chloroflexi accounts for a major proportion of the total microbial community within the upper 10 mbsf, whereas high temperature archaea (Terrestrial Hot Spring Crenarchaeotic Group and methanotrophic archaea) appear in varying local abundances in deeper, hydrothermal clay horizons with higher in situ temperatures (up to 55°C, 15 mbsf). In addition, geochemical evidence suggests that methanotrophy may be occurring in various horizons. There is also relict DNA (i.e., DNA preserved after cell death) that persists in horizons where the conditions suitable for microbial communities have ceased. PMID:28096736

  19. Origin and model of transform faults in the Okinawa Trough

    NASA Astrophysics Data System (ADS)

    Liu, Bo; Li, Sanzhong; Jiang, Suhua; Suo, Yanhui; Guo, Lingli; Wang, Yongming; Zhang, Huixuan

    2017-03-01

    Transform faults in back-arc basins are the key to revealing the opening and development of marginal seas. The Okinawa Trough (OT) represents an incipient and active back-arc or marginal sea basin oriented in a general NE-SW direction. To determine the strikes and spatial distribution of transform faults in the OT, this paper dissects the NW- and NNE-SN-trending fault patterns on the basis of seismic profiles, gravity anomalies and region geological data. There are three main NW-trending transpressional faults in the OT, which are the seaward propagation of NW-trending faults in the East China Continent. The NNE-SN-trending faults with right-stepping distribution behave as right-lateral shearing. The strike-slip pull-apart process or transtensional faulting triggered the back-arc rifting or extension, and these faults evolved into transform faults with the emergence of oceanic crust. Thus, the transform fault patterns are inherited from pre-existing oblique transtensional faults at the offsets between rifting segments. Therefore, the OT performs the oblique spreading mechanism similar to nascent oceans such as the Red Sea and Gulf of Aden.

  20. [Investigation into drinking problem of patients who visited a general hospital in central and northern Okinawa].

    PubMed

    Nakai, Minori; Hotta, Hiroshi; Ootsuru, Taku; Hiejima, Shigeto; Murakami, Masaru; Yuzuriha, Takefumi; Kondo, Tsuyoshi

    2013-04-01

    In Japan, many problems related to alcohol are pointed out from before. We believe that there is a unique drinking culture in Okinawa, such as a large amount of alcohol. Therefore, we estimate many people in Okinawa have a drinking problem. We conducted a survey of patients who visited general hospital (medical or surgical or orthopedic) in 2007. The purpose of this study is to collect basic data for introducing alcoholics to specialized treatment as early as possible, detecting the person who drink large amounts of alcohol, performing early intervention for people who drink large amount of alcohol, and advancing cooperation with specialized medical agencies of alcohol. As a result, Among the patients who visited general hospital in Okinawa, many problem drinkers are concentrated in the young age. and they have strong fears of health. The possibility of early intervention with intervention techniques, such as brief intervention, has been suggested.

  1. Development of Education Program for Okinawa Model Creative and Capable Engineers in Advanced Welding Technology

    NASA Astrophysics Data System (ADS)

    Manabe, Yukio; Matsue, Junji; Makishi, Takashi; Higa, Yoshikazu; Matsuda, Shoich

    Okinawa National College of Technology proposed “Educational Program for Practically Skilled Engineers in Advanced Welding Technology in Okinawa Style” to the Ministry of Economy, Trade and Industry and was adopted as a 2-year project starting from 2005. This project designed to fit for the regional characteristics of Okinawa, aims to develop the core human resources program that will help reinforce and innovate the welding engineering in the manufacturing industries. In 2005, the education program and the original textbook were developed, and in 2006, a proof class was held to confirm the suitability and the effectiveness of the program and the textbook in order to improve the attendees' basics and the application ability of welding. The results were quite positive. Also, by collaborating with the Japan Welding Society, points scored in this course were authorized as the education points of IIW international welding engineer qualification.

  2. AERIAL PHOTO INTERPRETATION FOR SITE CHARACTERIZATION, ENVIRONMENTAL PHOTOGRAPHIC INTERPRETATION CENTER (EPIC)

    EPA Science Inventory

    The Environmental Photographic Interpretation Center (EPIC) is a field station of the Landscape Ecology Branch (LEB), Environmental Sciences Division - Las Vegas, Office of Research and Development EPIC provides remote sensing technical support to help the Agency achieve its mult...

  3. EPIC'S NEW REMOTE SENSING DATA AND INFORMATION TOOLS AVAILABLE FOR EPA CUSTOMERS

    EPA Science Inventory



    EPIC's New Remote Sensing Data and Information Tools Available for EPA Customers Donald Garofalo Environmental Photographic Interpretation Center (EPIC) Landscape Ecology Branch Environmental Sciences Division National Exposure Research Laboratory

    Several new too...

  4. The EPIC Professional Learning Model: A Review of EPIC's Alignment with Leadership Development Research and Professional Learning National Standards. The Effective Practice Incentive Community (EPIC). Research Brief

    ERIC Educational Resources Information Center

    Sloan, Kay; Perreira-Leon, Maura

    2010-01-01

    With the creation of the Effective Practice Incentive Community (EPIC), New Leaders for New Schools hoped to accomplish two broad and ambitious goals. The first was to identify and reward leadership practices driving significant achievement gains in high-poverty, urban schools. The second was to learn from those practices and make them more widely…

  5. DOE`s Pollution Prevention Information Clearinghouse (EPIC)

    SciTech Connect

    Otis, P.T.

    1994-05-01

    The US Department of Energy`s (DOE`s) Pollution Prevention Information Clearinghouse (EPIC) is a computer system intended for the exchange of pollution prevention information DOE-wide. EPIC is being developed as a distributed system that will allow access to other databases and applications. The first prototype of EPIC (Prototype I) was put on-line in January 1994. Prototype I contains information on EM-funded pollution prevention projects; relevant laws, regulations, guidance, and policy; facility and DOE contacts; and meetings and conferences. Prototype I also gives users access to the INEL Hazardous Solvent Substitution Data System (HSSDS) and to information contained on the US Environmental Protection Agency`s (EPNS) Pollution Prevention Infbrmation Exchange System (PIES) as a test of the distributed system concept. An initial user group of about 35 is testing and providing feedback on Prototype I. Prototype II, with a Graphical User Interface (GUI), is planned for the end of CY94. This paper describes the current state of EPIC in terms of architecture, user interface, and information content. Plans for Prototype II and the final system are then discussed. The EPIC development effort is being coordinated with EPA and US Department of Defense (DoD) efforts to develop or upgrade their pollution prevention information exchange systems.

  6. Macrogenomic evidence for the origin of the black fly Simulium suzukii (Diptera: Simuliidae) on Okinawa Island, Japan.

    PubMed

    Adler, Peter H; Huang, Yao-Te; Reeves, Will K; Kim, Sam Kyu; Otsuka, Yasushi; Takaoka, Hiroyuki

    2013-01-01

    To determine the geographic origin of the black fly Simulium suzukii on Okinawa Island, Japan, macrogenomic profiles derived from its polytene chromosomes were compared with those of mainland and other insular populations of S. suzukii and of the isomorphic Simulium tani species complex. The Okinawan population is a chromosomally unique cytoform, designated 'D,' which is essentially monomorphic and differs by about 27 fixed rearrangements from the chromosomal standard sequence for the subgenus Simulium and by two fixed differences from its nearest known relative, representing the type of S. suzukii, on the main islands of Japan. Chromosomal band sequences revealed two additional, sympatric cytoforms of S. suzukii, designated 'A' and 'B,' each with species status, in Korea, and a third cytoform, designated 'C,' on Hokkaido, Japan. A new cytoform, 'K,' of S. tani from Malaysia, representing the type of S. tani, is more closely related to cytoforms in Thailand, as are populations from Taiwan previously treated as S. suzukii but more closely aligned with S. tani and newly recognized as cytoform 'L' of the latter nominal species. Rooting of chromosomal band sequences by outgroup comparisons allowed directionality of chromosomal rearrangements to be established, enabling phylogenetic inference of cytoforms. Of 41 macrogenomic rearrangements discovered in the five new cytoforms, four provide evidence for a stepwise origin of the Okinawan population from populations characteristic of the main islands of Japan. The macrogenomic approach applied to black flies on Okinawa Island illustrates its potential utility in defining source areas for other species of flies including those that might pose medical and veterinary risks.

  7. Development of mpi_EPIC model for global agroecosystem modeling

    SciTech Connect

    Kang, Shujiang; Wang, Dali; Jeff A. Nichols; Schuchart, Joseph; Kline, Keith L.; Wei, Yaxing; Ricciuto, Daniel M.; Wullschleger, Stan D.; Post, Wilfred M.; Izaurralde, R. Cesar

    2014-12-31

    Models that address policy-maker concerns about multi-scale effects of food and bioenergy production systems are computationally demanding. We integrated the message passing interface algorithm into the process-based EPIC model to accelerate computation of ecosystem effects. Simulation performance was further enhanced by applying the Vampir framework. When this enhanced mpi_EPIC model was tested, total execution time for a global 30-year simulation of a switchgrass cropping system was shortened to less than 0.5 hours on a supercomputer. The results illustrate that mpi_EPIC using parallel design can balance simulation workloads and facilitate large-scale, high-resolution analysis of agricultural production systems, management alternatives and environmental effects.

  8. Development of mpi_EPIC model for global agroecosystem modeling

    DOE PAGES

    Kang, Shujiang; Wang, Dali; Jeff A. Nichols; ...

    2014-12-31

    Models that address policy-maker concerns about multi-scale effects of food and bioenergy production systems are computationally demanding. We integrated the message passing interface algorithm into the process-based EPIC model to accelerate computation of ecosystem effects. Simulation performance was further enhanced by applying the Vampir framework. When this enhanced mpi_EPIC model was tested, total execution time for a global 30-year simulation of a switchgrass cropping system was shortened to less than 0.5 hours on a supercomputer. The results illustrate that mpi_EPIC using parallel design can balance simulation workloads and facilitate large-scale, high-resolution analysis of agricultural production systems, management alternatives and environmentalmore » effects.« less

  9. EPICS: A control system software co-development success story

    SciTech Connect

    Knott, M.; Gurd, D.; Lewis, S.; Thuot, M.

    1993-11-01

    The Experimental Physics and Industrial Control Systems (EPICS) is the result of a software sharing and co-development effort of major importance now underway. The initial two participants, LANL and ANL, have now been joined by three other labs, and an earlier version of the software has been transferred to three commercial firms and is currently undergoing separate development. The reasons for EPICS`s success may be useful to enumerate and explain and the desire and prospects for its continued development are certainly worth examining.

  10. Vertical distribution of precipitation particles in Baiu frontal stratiform intense rainfall around Okinawa Island, Japan

    NASA Astrophysics Data System (ADS)

    Oue, M.; Ohigashi, T.; Tsuboki, K.; Nakakita, E.

    2015-06-01

    The vertical distribution of precipitation particles in an intensely precipitating stratiform cloud associated with the Baiu front around Okinawa Island was observed. X-band polarimetric radar, disdrometer, and hydrometeor videosonde data were used to examine the precipitation processes. The cloud top was approximately 12 km above sea level, as convection was depressed while stratiform regions developed near Okinawa Island. In the rain region below 3 km, the mean median volume diameter of the raindrop size distribution (DSD) estimated from the radar variables was 1.55 mm, and the mean normalized intercept parameter was 104.12 mm-1 m-3 with a mean radar reflectivity of 40.5 dBZe. The DSD indicates that the stratiform precipitation was characterized by higher number concentrations of smaller drops than observed previously in convective cells in a Baiu frontal convective precipitation region around Okinawa Island. The DSD also suggests the presence of larger raindrops than in convective cells embedded in a Baiu frontal stratiform precipitation region around Okinawa Island. In the ice region at 5-6 km, just above the melting layer and 6 km below the cloud top, the differential reflectivity and specific differential phase showed positive values, and videosonde measurements revealed that the number concentration of column-, plate-, and capped-column-like crystals (maximum dimensions of ≥0.1 mm) was 112 L-1. The high number concentration of these crystals contributed to the intense stratiform rainfall associated with the Baiu front.

  11. Situation Report--Hong Kong, Malawi, Pakistan, Panama, Philippines, Ryukyu Islands (Okinawa), Sabah, Sarawak.

    ERIC Educational Resources Information Center

    International Planned Parenthood Federation, London (England).

    Data relating to population and family planning in eight foreign countries are presented in these situation reports. Countries included are Hong Kong, Malawi, Pakistan, Panama, Philippines, Ryukyu Islands (Okinawa), Sabah, and Sarawak. Information is provided where appropriate and available, under two topics, general background and family planning…

  12. Japan’s Battle of Okinawa, April-June 1945 (Leavenworth Papers, Number 18)

    DTIC Science & Technology

    1990-05-01

    English, the Battle of Okinawa is analyzed from the vantage point of the Japanese defenders. Basing his work on extensive research in Japanese ...Landings ....................................... Planning the Japanese 12 April Offensive ..................... The American Advance...The Japanese 12 April Offensive ............................... N ight Problem s ................................................ M

  13. Genome Sequence of Lactobacillus paracasei Strain LC-Ikematsu, Isolated from a Pineapple in Okinawa, Japan.

    PubMed

    Tada, Ipputa; Saitoh, Seikoh; Aoyama, Hiroaki; Shinzato, Naoya; Yamamoto, Norikuni; Arita, Masanori; Ikematsu, Shinya

    2017-02-02

    The draft genome sequence of Lactobacillus paracasei strain LC-Ikematsu, isolated from a pineapple in Okinawa, was determined. The total length of the 87 contigs was 3.08 Mb with a G+C content of 46.2% and 2,946 coding sequences. The genome analysis revealed its biosynthetic ability of 11 amino acids.

  14. Mosquito biodiversity patterns around urban environments in South-central okinawa island, Japan.

    PubMed

    Hoshi, Tomonori; Imanishi, Nozomi; Higa, Yukiko; Chaves, Luis Fernando

    2014-12-01

    Okinawa is the largest, most urbanized, and densely populated island in the Ryukyus Archipelago, where mosquito species diversity has been thoroughly studied. However, the south-central Okinawa mosquito fauna has been relatively poorly studied. Here, we present results from a mosquito faunal survey in urban environments of Nishihara city, south-central Okinawa. Mosquitoes were sampled biweekly, from April 2007 to March 2008, at 3 different environments: a forest preserve, an animal farm, and a water reservoir. We employed 4 mosquito collection methods: 1) oviposition traps; 2) light traps; 3) sweep nets; and 4) larval surveys of tree holes, leaf axils, and artificial water containers. We collected a total of 568 adults and 10,270 larvae belonging to 6 genera and 13 species, including 6 species of medical importance: Aedes albopictus, Armigeres subalbatus, Anopheles Hyrcanus group, Culex bitaeniorhynchus, Cx. quinquefasciatus, and Cx. tritaeniorhynchus. Mosquito species composition was similar to data from previous studies in Okinawa Island. The flattening of the species accumulation curve suggests that our diversity sampling was exhaustive with light and oviposition traps, as well as the coincidence between the species richness we found in the field and estimates from the Chao2 index, a theoretical estimator of species richness based on species abundance. This study highlights the importance of combining several sampling techniques to properly characterize regional mosquito fauna and to monitor changes in the presence of mosquito species.

  15. Serologic and Virologic Studies of an Imported Dengue Case Occurring in 2014 in Okinawa, Japan.

    PubMed

    Saito, Mika; Tamayose, Maki; Miyagi, Kazuya; Takaragawa, Hiroo; Tateyama, Masao; Tadano, Masayuki; Fujita, Jiro

    2016-01-01

    After returning from Bali, Indonesia, in February 2014, a 72-year-old man was hospitalized in Okinawa owing to a high fever and rash. Dengue was clinically suspected, and the patient tested positive for IgM against dengue using a commercial kit. Serologically, the patient showed secondary seroreactivity. Significant increases in neutralization titers (N-titers) against all 4 serotypes of dengue virus (DENV) and Japanese encephalitis virus (JEV) strains were recognized in convalescent-phase sera comparing to acute phase sera. The N-titer against DENV serotype 1 (DENV-1) was the highest among all DENV serotypes. Interestingly, the N-titers against JEV strains were significantly higher than those against all types of DENV comparing to acute phase sera. The virus was isolated from the acute-phase serum and identified as DENV-1 and designated RD14/Okinawa. The patient's symptoms were due to DENV-1 infection. Phylogenetic sequencing analysis indicated that the isolate RD14/Okinawa belonged to genotype I of DENV-1, which is closely related to the Southeast Asian strains and isolates found during the dengue outbreak in Japan in 2014. We should undertake control measures against dengue in Okinawa, which is a subtropical area with Aedes albopictus activity throughout year.

  16. Acoustic Impact of Short-Term Ocean Variability in the Okinawa Trough

    DTIC Science & Technology

    2010-01-20

    Florida State University Tallahassee, FL USA P. Spence QinetiQ North America Technology Solutions Group —PSI, Stennis Space Center, MS, USA...analyses and public observations in the Okinawa Trough region over I August - 31 October 2007. MLD(m) ILD(m) SLD (m) BLG ((m/s)/100m) RMS BIAS RMS BIAS RMS

  17. "El Norte," Deracination and Circularity: An Epic Gone Awry

    ERIC Educational Resources Information Center

    Brakel, Arthur

    2007-01-01

    Early journalistic reviews (e.g., Gold, Ebert, and Kael) of "El Norte" (1983), Gregory Nava's first major film, identify it as an epic. In "El Norte" the siblings Enrique and Rosa, two Guatemalan Amerindians, leave their native village on a quest to what for them is the mythical land in the North. Although "El Norte"…

  18. The Epic inside Us: Using Intuitive Play to Teach Beowulf

    ERIC Educational Resources Information Center

    Menzies, J. Beth Haase

    2004-01-01

    The element of play is underutilized in the secondary classroom in spite of the fact that play produces unique opportunities for meaningful learning. The ways in which the elements of epic poetry, Beowulf, and the Old English diction differed from the modern usage is discussed.

  19. The E.P.I.C. Journey Sanctioning Model

    ERIC Educational Resources Information Center

    Fueglein, Jennifer S.; Price, Kevin S.; Alicea-Rodriguez, Adriana; McKinney, Jan Wilson; Jimenez, Anne L.

    2012-01-01

    As universities look for more effective ways to address violations of behavioral standards, a proposed solution is to infuse intentional development into well-established conduct processes inherently focused on legal mandates and due process. The E.P.I.C. Journey Sanctioning Model was designed to refocus the outcomes of the conduct process to…

  20. Becoming Teachers' Little Epics: What Digital Storytelling Might Reveal

    ERIC Educational Resources Information Center

    Radford, Linda; Aitken, Avril

    2014-01-01

    This paper discusses pre-service teachers' use of multi-modal tools to produce three-minute films in light of critical moments in their teaching practice. Two cases are considered; each centers on a film, a "little epic" that was produced by a future teacher who attempts to work within an anti-racist framework for social justice.…

  1. The Epic of Sundiata: Using African Literature in the Classroom.

    ERIC Educational Resources Information Center

    Sullivan, Margaret Lo Piccolo

    1998-01-01

    Discusses the "Epic of Sundiata" which chronicles the rise of the Empire of Mali in the grasslands of northwestern Africa in the 13th century. This work is a compelling drama that bears comparison to such other hero tales as "The Iliad" and the Arthurian legend. Includes suggested teaching activities. (MJP)

  2. PvaPy: Python API for EPICS PV Access

    SciTech Connect

    Veseli, S.

    2016-01-01

    As the number of sites deploying and adopting EPICS Version 4 grows, so does the need to support PV Access from multiple languages. Especially important are the widely used scripting languages that tend to reduce both software development time and the learning curve for new users. In this paper we describe PvaPy, a Python API for the EPICS PV Access protocol and its accompanying structured data API. Rather than implementing the protocol itself in Python, PvaPy wraps the existing EPICS Version 4 C++ libraries using the Boost.Python framework. This approach allows us to benefit from the existing code base and functionality, and to significantly reduce the Python API development effort. PvaPy objects are based on Python dictionaries and provide users with the ability to access even the most complex of PV Data structures in a relatively straightforward way. Its interfaces are easy to use, and include support for advanced EPICS Version 4 features such as implementation of client and server Remote Procedure Calls (RPC).

  3. An Evaluation of EPIC's Analysis of School Practice & Knowledge System. The Effective Practice Incentive Community (EPIC). Research Brief

    ERIC Educational Resources Information Center

    Sloan, Kay; Pereira-Leon, Maura; Honeyford, Michelle

    2012-01-01

    Established in 2006 by New Leaders for New Schools[TM], the Effective Practice Incentive Community (EPIC) initiative rewards high-need urban schools showing significant gains in student achievement. In exchange, schools agree to share the practices helping to drive those gains, which they do through an in-depth study of practice, aided by the EPIC…

  4. The 1768 and 1791 Okinawa tsunamis in the Ryukyu Trench region

    NASA Astrophysics Data System (ADS)

    Nakamura, M.

    2013-12-01

    Risk of the great earthquakes and tsunamis has been assumed to be low in the Ryukyu Trench because the interplate coupling is weak and great interplate earthquakes (> M8.0) had not been recorded historically for about 300 years. However, recent study revealed that the 1771 Yaeyama earthquake (M8.5 from tsunami heights distribution) at south Ryukyu Trench and the 1911 Kikaijima earthquake (M 8.0) at north-central Ryukyu Trench were the interplate earthquakes. We need re-examine the great historical earthquakes in the Ryukyu Trench. Two historical tsunamis which occurred on 1768 and 1791 in the Okinawa Island were documented in the old document 'Kyuyo' (formal chronicles of Ryukyu). I investigated the source fault model of two tsunami events using numerical simulations of tsunami and earthquake shaking, and showed that their events would be the interplate earthquakes. One earthquake occurred at noon of July 22th, 1768. The rock-walls of castle, grave of royal family were collapsed by the earthquake shaking around Naha, Okinawa Island. After the shaking, tsunami arrived Naha port and Zamami Island, which is west of Okinawa Island. Recorded tsunami heights were about 1 m at Naha port. Nine houses and rice fields were damaged by the inundation of the tsunami in the Zamami Island. Estimated tsunami heights were 4 and 5 m in the villages of the Zamami Island. The numerical modeling of tsunami and the estimation of earthquake shaking using empirical formula were employed, and the fault parameters of the 1768 earthquake were estimated. The faults were set to Okinawa Trough (M7.5 normal faults), southwest of Okinawa island (M7.5 normal faults), southwest of Okinawa island (M7.5 reverse fault), and Ryukyu Trench (M8.0 thrust faults). The computed tsunami heights and intensities of the ground shaking of the M7.5 reverse fault near the Zamami Island and the M8.0 interplate earthquake models are consistent with to the recorded ones. Another tsunami was also recorded in the

  5. Comparative Single-Cell Genomics of Chloroflexi from the Okinawa Trough Deep-Subsurface Biosphere

    PubMed Central

    Fullerton, Heather

    2016-01-01

    ABSTRACT Chloroflexi small-subunit (SSU) rRNA gene sequences are frequently recovered from subseafloor environments, but the metabolic potential of the phylum is poorly understood. The phylum Chloroflexi is represented by isolates with diverse metabolic strategies, including anoxic phototrophy, fermentation, and reductive dehalogenation; therefore, function cannot be attributed to these organisms based solely on phylogeny. Single-cell genomics can provide metabolic insights into uncultured organisms, like the deep-subsurface Chloroflexi. Nine SSU rRNA gene sequences were identified from single-cell sorts of whole-round core material collected from the Okinawa Trough at Iheya North hydrothermal field as part of Integrated Ocean Drilling Program (IODP) expedition 331 (Deep Hot Biosphere). Previous studies of subsurface Chloroflexi single amplified genomes (SAGs) suggested heterotrophic or lithotrophic metabolisms and provided no evidence for growth by reductive dehalogenation. Our nine Chloroflexi SAGs (seven of which are from the order Anaerolineales) indicate that, in addition to genes for the Wood-Ljungdahl pathway, exogenous carbon sources can be actively transported into cells. At least one subunit for pyruvate ferredoxin oxidoreductase was found in four of the Chloroflexi SAGs. This protein can provide a link between the Wood-Ljungdahl pathway and other carbon anabolic pathways. Finally, one of the seven Anaerolineales SAGs contains a distinct reductive dehalogenase homologous (rdhA) gene. IMPORTANCE Through the use of single amplified genomes (SAGs), we have extended the metabolic potential of an understudied group of subsurface microbes, the Chloroflexi. These microbes are frequently detected in the subsurface biosphere, though their metabolic capabilities have remained elusive. In contrast to previously examined Chloroflexi SAGs, our genomes (several are from the order Anaerolineales) were recovered from a hydrothermally driven system and therefore provide a

  6. Microearthquakes and Crustal Structures in the Southern Okinawa Trough

    NASA Astrophysics Data System (ADS)

    Lin, J.; Sibuet, J.; Lee, C.; Hsu, S.; Klingelhoefer, F.; Auffret, Y.; Pelleau, P.; Crozon, J.

    2004-12-01

    Located east of Taiwan, the southern Okinawa Trough (SOT) is a portion of a young continental backarc basin, which is still in the rifting stage. Based on seismicity data, a slab tear was identified along 123.3°E. In order to better understand the nature and role of tectonic features in this region, a passive seismic Ocean Bottom Seismometer (OBS) experiment was conducted from November 19 to December 1, 2003. 15 OBSs were deployed in a 130 x 90 km area including the Ryukyu slab tear and the Cross Backarc Volcanic Trail (CBVT). OBSs with three 4.5 Hz component geophones and an hydrophone recorded about 4000 microearthquakes. Most of them (about 94%) are crustal earthquakes (0-20 km) which occured in the SOT central graben. Just a few earthquakes were recorded from the upper slope of the northern SOT and from the Ryukyu forearc. Most of the earthquake local magnitudes (ML) range from 1 to 2, even if the whole range of magnitudes spans from 0.9 to 4. Three clusters of high microearthquake activity are observed in : (1) the CBVT area (24.7-25°N; 122.5-123°E); (2) the southern central graben area (24.65-24.85°N;123-123.3°E); and (3) the northern central graben area (24.9-25.2°N ;123.2-123.65°E). The southern central graben cluster is also identified by the Japan Meteorological Agency (JMA). The earthquakes determined by the JMA in the northern central graben present larger magnitudes than ours, but are globally located 10-km south of our cluster. The CBVT cluster is not recorded in JMA data probably because the shallow (O-5 km) volcanic activity only involved small earthquakes which are too far from the JMA's network. Based on swath bathymetric and seismic data, most of the epicenters lie along already identified normal faults. Thus, except the volcanic activity, which occurs in the CBVT area, the main factor controlling the SOT tectonic activity is normal faulting. On the northern and southern slopes of the central graben, hypocenters occur along normal fauls

  7. Ribosomal DNA haplotype distribution of Bursaphelenchus xylophilus in Kyushu and Okinawa islands, Japan

    PubMed Central

    Nose, Mine; Miyahara, Fumihiko; Ohira, Mineko; Matsunaga, Koji; Tobase, Masashi; Koyama, Takao; Yoshimoto, Kikuo

    2009-01-01

    Ribosomal DNA region sequences (partial 18S, 28S and complete ITS1, 5.8S, and ITS2) of the pinewood nematode (Bursaphelenchus xylophilus) were obtained from DNA extracted directly from wood pieces collected from wilted pine trees throughout the Kyushu and Okinawa islands, Japan. Either a 2569bp or 2573bp sequence was obtained from 88 of 143 samples. Together with the 45 rDNA sequences of pinewood nematode isolates previously reported, there were eight single nucleotide polymorphisms and two indels of two bases. Based on these mutations, nine haplotypes were estimated. The haplotype frequencies differed among regions in Kyushu island (northwest, northeast and center, southeast, and southwest), and the distribution was consistent with the invasion and spreading routes of the pinewood nematode previously estimated from past records of pine wilt and wood importation. There was no significant difference in haplotype frequencies among the collection sites on Okinawa island. PMID:22736814

  8. Molecular epidemiology of human metapneumovirus from 2009 to 2011 in Okinawa, Japan.

    PubMed

    Nidaira, Minoru; Taira, Katsuya; Hamabata, Hirotsune; Kawaki, Tatsuyoshi; Gushi, Kazuo; Mahoe, Youko; Maeshiro, Noriyuki; Azama, Yasuhito; Okano, Shou; Kyan, Hisako; Kudaka, Jun; Tsukagoshi, Hiroyuki; Noda, Masahiro; Kimura, Hirokazu

    2012-07-01

    To clarify the molecular epidemiology of human metapneumovirus (HMPV) in Okinawa Prefecture, located in a subtropical region of Japan, we performed genetic analysis of the F gene in HMPV from patients with acute respiratory infection from January 2009 to December 2011. HMPV was detected in 18 of 485 throat swabs (3.7%). Phylogenetic analysis showed that 17 strains belonged to subgroup A2 and 1 strain belonged to subgroup B1. We did not observe seasonal prevalence of HMPV during the investigation period. A high level of sequence identity was observed in the strains belonging to subgroup A2 (>95%), and no amino acid substitution was found compared with other strains detected in Japan and other countries. The pairwise distance values among the present strains belonging to subgroup A2 were short. Our results suggest that the predominant HMPV strains belonging to A2 are highly homologous and seasonal epidemics were not seen in Okinawa during the investigation period.

  9. Prevalence of Blastocystis hominis and Strongyloides stercoralis infection in Okinawa, Japan.

    PubMed

    Hirata, Tetsuo; Nakamura, Hiroshi; Kinjo, Nagisa; Hokama, Akira; Kinjo, Fukunori; Yamane, Nobuhisa; Fujita, Jiro

    2007-11-01

    This study was conducted to clarify the prevalence of Blastocystis hominis and Strongyloides stercoralis infection in Ryukyu University Hospital, Okinawa, Japan, between January 2004 and November 2006. Stool samples collected from 3,292 patients were examined by the direct smear method, formalin-ether sedimentation method, and agar plate culture method. The prevalence rate of B. hominis and S. stercoralis infection was 1.0 and 3.4%, respectively. The prevalence rate of B. hominis infection in patients aged >80 years old was significantly higher than that in patients <80 years old (P < 0.001). The prevalence rate of S. stercoralis infection was significantly higher in patients with B. hominis infection compared with those without (P < 0.001). This study demonstrated a prevalence rate for B. hominis and S. stercoralis infection and an association between B. hominis and S. stercoralis infection in Okinawa, Japan.

  10. The Explicit Planetary Isentropic-Coordinate (EPIC) Atmospheric Model

    NASA Astrophysics Data System (ADS)

    Dowling, T. E.; Fischer, A. S.; Gierasch, P. J.; Harrington, J.; LeBeau, R. P.; Santori, C. M.

    1998-04-01

    We describe a new general circulation model (GCM) designed for planetary atmospheric studies called the EPIC model. This is a finite-difference model based on the isentropic-coordinate scheme of Hsu and Arakawa (1990.Mon. Wea. Rev.118, 1933-1959). We report on previously undocumented modifications, additions, and key practical issues that experience running the model has revealed to be important. The model integrates the hydrostatic primitive equations, which are valid for large-scale atmospheric dynamics and include gravity waves (buoyancy waves), planetary waves (Rossby waves), and horizontally propagating sound waves (Lamb waves), but not vertically propagating sound waves because of the hydrostatic approximation. The vertical coordinate is entropy in the form of potential temperature, which coincides with material surfaces for adiabatic motion. This means that there is no vertical velocity except where there is heating, which improves accuracy and helps the model maintain conservation properties over long integrations. An isentropic vertical coordinate is natural for the atmospheres of Jupiter, Saturn, Uranus, and Neptune, which are believed to have essentially adiabatic interiors that match up with the bottom of the model and is also excellent for middle-atmosphere studies on any planet. Radiative processes are parameterized by Newtonian cooling, and the latent heat of ortho-para hydrogen conversion is included when appropriate, with a suitably defined mean potential temperature. The model is written with general map factors that make it easy to configure in oblate spherical, cylindrical, or Cartesian coordinates. The code includes optional Message Passing Interface (MPI) library calls and hence runs on any Unix-based parallel computer or network cluster. An optional graphical user interface to commercial visualization software facilitates control of the model and analysis of output. Memory is allocated dynamically such that the user does not recompile to

  11. A remarkable new species of the genus Teinotarsina (Lepidoptera, Sesiidae) from Okinawa-jima, Japan

    PubMed Central

    Yagi, Sadahisa; Hirowatari, Toshiya; Arita, Yutaka

    2016-01-01

    Abstract A new species of long-legged clearwing moth Teinotarsina aurantiaca Yagi, Hirowatari & Arita, sp. n. is described from Okinawa-jima, the Ryukyus, Japan. The species is distinguishable at a glance from other related congeners by the remarkable orange scales ornamenting many parts of the body, such as antennae, palpi, legs, and wings. We hypothesize that the species acquired these differences as a result of convergence with toxic species (Batesian mimicry) or other mimics (Müllerian mimicry). PMID:27110163

  12. Genome Sequence of Lactobacillus paracasei Strain LC-Ikematsu, Isolated from a Pineapple in Okinawa, Japan

    PubMed Central

    Saitoh, Seikoh; Aoyama, Hiroaki; Shinzato, Naoya; Yamamoto, Norikuni; Arita, Masanori; Ikematsu, Shinya

    2017-01-01

    ABSTRACT The draft genome sequence of Lactobacillus paracasei strain LC-Ikematsu, isolated from a pineapple in Okinawa, was determined. The total length of the 87 contigs was 3.08 Mb with a G+C content of 46.2% and 2,946 coding sequences. The genome analysis revealed its biosynthetic ability of 11 amino acids. PMID:28153910

  13. A remarkable new species of the genus Teinotarsina (Lepidoptera, Sesiidae) from Okinawa-jima, Japan.

    PubMed

    Yagi, Sadahisa; Hirowatari, Toshiya; Arita, Yutaka

    2016-01-01

    A new species of long-legged clearwing moth Teinotarsina aurantiaca Yagi, Hirowatari & Arita, sp. n. is described from Okinawa-jima, the Ryukyus, Japan. The species is distinguishable at a glance from other related congeners by the remarkable orange scales ornamenting many parts of the body, such as antennae, palpi, legs, and wings. We hypothesize that the species acquired these differences as a result of convergence with toxic species (Batesian mimicry) or other mimics (Müllerian mimicry).

  14. areaDetector: Software for 2-D Detectors in EPICS

    SciTech Connect

    Rivers, M.

    2011-09-23

    areaDetector is a new EPICS module designed to support 2-D detectors. It is modular C++ code that greatly simplifies the task of writing support for a new detector. It also supports plugins, which receive detector data from the driver and process it in some way. Existing plugins perform Region-Of-Interest extraction and analysis, file saving (in netCDF, HDF, TIFF and JPEG formats), color conversion, and export to EPICS records for image display in clients like ImageJ and IDL. Drivers have now been written for many of the detectors commonly used at synchrotron beamlines, including CCDs, pixel array and amorphous silicon detectors, and online image plates.

  15. EPICS V4 Evaluation for SNS Neutron Data

    SciTech Connect

    Kasemir, Kay; Pearson, Matthew R; Guyotte, Greg S

    2015-01-01

    Version 4 of the Experimental Physics and Industrial Control System (EPICS) toolkit allows defining application-specific structured data types (pvData) and offers a network protocol for their efficient exchange (pvAccess). We evaluated V4 for the transport of neutron events from the detectors of the Spallation Neutron Source (SNS) to data acquisition and experiment monitoring systems. This includes the comparison of possible data structures, performance tests, and experience using V4 in production on a beam line.

  16. Simulating Field-Scale Soil Organic Carbon Dynamics Using EPIC

    SciTech Connect

    Causarano, Hector J.; Shaw, Joey N.; Franzluebbers, A. J.; reeves, D. W.; Raper, Randy L.; Balkcom, Kipling S.; Norfleet, M. L.; Izaurralde, R Cesar

    2007-07-01

    Simulation models integrate our knowledge of soil organic C (SOC) dynamics and are useful tools for evaluating impacts of crop management on soil C sequestration; yet, they require local calibration. Our objectives were to calibrate the Environmental Policy Integrated Climate (EPIC) model, and evaluate its performance for simulating SOC fractions as affected by soil landscape and management. An automated parameter optimization procedure was used to calibrate the model for a site-specific experiment in the Coastal Plain of central Alabama. The ability of EPIC to predict corn (Zea mays L.) and cotton (Gossypium hirsutum L.) yields and SOC dynamics on different soil landscape positions (summit, sideslope and drainageway) during the initial period of conservation tillage adoption (5 years) was evaluated using regression and mean squared deviations. Simulated yield explained 88% of measured yield variation, with greatest disagreement on the sideslope position and highest agreement in the drainageway. Simulations explained approximately 1, 34 and 40% of the total variation in microbial biomass C (MBC), particulate organic C (POC) and total organic C (TOC), respectively. Lowest errors on TOC simulations (0-20 cm) were found on the sideslope and summit. We conclude that the automated parameterization was generally successful, although further work is needed to refine the MBC and POC fractions, and to improve EPIC predictions of SOC dynamics with depth. Overall, EPIC was sensitive to spatial differences in C fractions that resulted from differing soil landscape positions. The model needs additional refinement for accurate simulations of field-scale SOC dynamics affected by short-term management decisions.

  17. Perfusion Electronic Record Documentation Using Epic Systems Software.

    PubMed

    Steffens, Thomas G; Gunser, John M; Saviello, George M

    2015-12-01

    This paper describes the design and use of Epic Systems software for documentation of perfusion activities as part of the patient electronic medical record. The University of Wisconsin Hospital and Clinics adapted the Anesthesia software module and developed an integrated perfusion/anesthesia record for the documentation of cardiac and non-cardiac surgical procedures. This project involved multiple committees, approvals, and training to successfully implement. This article will describe our documentation options, concepts, design, challenges, training, and implementation during our initial experience.

  18. Prehistoric introduction of domestic pigs onto the Okinawa Islands: ancient mitochondrial DNA evidence.

    PubMed

    Watanobe, Takuma; Ishiguro, Naotaka; Nakano, Masuo; Takamiya, Hiroto; Matsui, Akira; Hongo, Hitomi

    2002-08-01

    Ancient DNAs of Sus scrofa specimens excavated from archaeological sites on the Okinawa islands were examined to clarify the genetic relationships among prehistoric Sus scrofa, modern wild boars and domestic pigs inhabiting the Ryukyu archipelago, the Japanese islands, and the Asian continent. We extracted remain DNA from 161 bone specimens excavated from 12 archaeological sites on the Okinawa islands and successfully amplified mitochondrial DNA control region fragments from 33 of 161 specimens. Pairwise difference between prehistoric and modern S. scrofa nucleotide sequences showed that haplotypes of the East Asian domestic pig lineage were found from archaeological specimens together with Ryukyu wild boars native to the Ryukyu archipelago. Phylogenetic analysis of 14 ancient sequences (11 haplotypes; 574 bp) indicated that S. scrofa specimens from two Yayoi-Heian sites (Kitahara and Ara shellmiddens) and two Recent Times sites (Wakuta Kiln and Kiyuna sites) are grouped with modern East Asian domestic pigs. Sus scrofa specimens from Shimizu shellmidden (Yayoi-Heian Period) were very closely related to modern Sus scrofa riukiuanus but had a unique nucleotide insertion, indicating that the population is genetically distinct from the lineage of modern Ryukyu wild boars. This genetic evidence suggests that domestic pigs from the Asian continent were introduced to the Okinawa islands in the early Yayoi-Heian period (1700-2000 BP), or earlier.

  19. Deep ventilation in the Okinawa Trough induced by Kerama Gap overflow

    NASA Astrophysics Data System (ADS)

    Nishina, Ayako; Nakamura, Hirohiko; Park, Jae-Hun; Hasegawa, Daisuke; Tanaka, Yuki; Seo, Seongbong; Hibiya, Toshiyuki

    2016-08-01

    Near-bottom water flowing over the Kerama Gap's sills is thought to ventilate the deep water below ˜1100 m depth in the Okinawa Trough and then upwell with 5-10 years residence time. The present study follows up on this phenomenon, using comprehensive profile data of temperature, salinity, dissolved oxygen, currents and turbulence obtained by intensive shipboard observations performed in June 2013 and June 2014 in the region. Strong near-bottom subtidal flow with speeds exceeding 0.5 m s-1 was observed within a layer of about 100 m thickness over the western side of the peak of the main sill. Temperature and salinity sections along the Kerama Gap indicated some depressions and overturns of the deep water downstream of the strong overflow, suggesting the existence of breaking internal gravity waves and hydraulic jumps. Associated vertical diffusivities, estimated using the Thorpe scale and the buoyancy frequency, were three to four orders of magnitude larger than typical values observed in the thermocline of the open ocean (˜10-5 m2 s-1). The dissolved oxygen section also indicated strong vertical mixing and associated upwelling with the entrainment of the near-bottom overflow water into the lower thermocline beneath the Kuroshio in the Okinawa Trough. The present study not only supports the previous conceptual model but also provides new evidence that the Okinawa Trough is an upwelling location where nutrient rich Philippine Sea intermediate water is sucked up into the lower thermocline below the Kuroshio.

  20. [Epidemiology of subacute sclerosing panencephalitis in Okinawa, Japan (1977-2005)].

    PubMed

    Hirayasu, Kyomi; Oshiro, Satoshi; Nakada, Yukikatsu

    2010-11-01

    The epidemiology of subacute sclerosing panencephalitis (SSPE) has changed since the introduction of measles immunization in 1970's. We studied the incidence of SSPE in Okinawa. There were 22 cases (16 males and 6 females) of SSPE from 1977 to 2005 in Okinawa. The incidence was 0.63 per million population per year from 1977 to 1986, 0 from 1987 to 1993, 1.17 from 1994 to 1999 and 0.75 from 2000 to 2005. Twenty-one SSPE patients had a history of non-immunized measles and 19 of them (90%) had measles infection under 2 years of age. There were measles epidemic every 2-5 years in Okinawa. Ten of 21 cases contracted measles in 1990-1991. The percentage of patients with measles infection under 2 years of age during measles epidemics ranged from 46% to 56%. Early measles infection (under 2 years of age) is a risk factor for SSPE. Routine measles immunization to prevent measles infection is very important for the prevention of SSPE.

  1. Molecular characterization of Cryptosporidium parvum from two different Japanese prefectures, Okinawa and Hokkaido.

    PubMed

    Ichikawa-Seki, Madoka; Aita, Junya; Masatani, Tatsunori; Suzuki, Moemi; Nitta, Yoshiki; Tamayose, Genta; Iso, Takehiro; Suganuma, Keisuke; Fujiwara, Takashi; Matsuyama, Keita; Niikura, Tadamasa; Yokoyama, Naoaki; Suzuki, Hiroshi; Yamakawa, Kazuhiro; Inokuma, Hisashi; Itagaki, Tadashi; Zakimi, Satoshi; Nishikawa, Yoshifumi

    2015-04-01

    Infectious diarrhea is the most frequent cause of morbidity and mortality in neonatal calves. Cryptosporidium parvum is one of the main pathogens associated with calf diarrhea. Although diarrhea is a symptom of infection with various pathogens, investigations to detect the types of pathogens have never been performed in Japan. This study investigated the prevalence of four major diarrhea-causing pathogens in calves: C. parvum, rotavirus, coronavirus, and enterotoxigenic Escherichia coli (E. coli K99). Commercial immunochromatography testing of all four pathogens and molecular analysis of C. parvum with diarrhea in calves from southernmost Okinawa and northernmost Hokkaido, Japan, were conducted. The frequencies of C. parvum, rotavirus, coronavirus, and E. coli (K99) in Okinawa were 50%, 28%, 2.3%, and 4.7%, respectively. Watery fecal stools were significantly correlated with C. parvum (p<0.05). In oocyst calculations for C. parvum, no significant difference was observed between the single-infection cases and the mixed-infection cases with rotavirus. Interestingly, molecular analyses targeting small subunit ribosomal RNA as well as glycoprotein 60 (GP60) genes revealed that the C. parvum nucleotide sequences from the two prefectures were identical, indicating that C. parvum with a uniform characteristic is distributed throughout Japan. GP60 subtyping analysis identified C. parvum from Okinawa and Hokkaido as belonging to the IIaA15G2R1 subtype, a known zoonotic subtype. Hence, control of cryptosporidiosis is important not only for pre-weaned calves, but also for human health.

  2. EPICS : operating system independent device/driver support.

    SciTech Connect

    Kraimer, M. R.; Accelerator Systems Division

    2003-01-01

    Originally EPICS input/output controllers (IOCs) were only supported on VME-based systems running the vxWorks operating system. Now IOCs are supported on many systems: vxWorks, RTEMS, Solaris, HPUX, Linux, WIN32, and Darwin. A challenge is to provide operating-system-independent device and driver support. This paper presents some techniques for providing such support. EPICS (Experimental Physics and Industrial Control System) is a set of software tools, libraries, and applications developed collaboratively and used worldwide to create distributed, real-time control systems for scientific instruments such as particle accelerators, telescopes, and other large scientific experiments. An important component of all EPICS-based control systems is a collection of input/output controllers (IOCs). An IOC has three primary components: (1) a real-time database; (2) channel access, which provides network access to the database; and (3) device/driver support for interfacing to equipment. This paper describes some projects related to providing device/driver support on non-vxWorks systems. In order to support IOCs on platforms other than vxWorks, operating-system-independent (OSI) application program interfaces (APIs) were defined for threads, semaphores, timers, etc. Providing support for a new platform consists of providing an operating-system-dependent implementation of the OSI APIs.

  3. Helicobacter pylori cagA 12-bp insertion can be a marker for duodenal ulcer in Okinawa, Japan

    PubMed Central

    Matsuo, Yuichi; Shiota, Seiji; Matsunari, Osamu; Suzuki, Rumiko; Watada, Masahide; Binh, Tran Thanh; Kinjo, Nagisa; Kinjo, Fukunori; Yamaoka, Yoshio

    2013-01-01

    Backgrounds Helicobacter pylori cagA can be classified into mainly two types (East-Asian-type and Western-type cagA) according to the repeat regions located in the 3′ region. Recent studies showed that the Western-type cagA in strains from Okinawa, Japan formed a different cluster (J-Western-type cagA subtype). We also reported that J-Western-type cagA possess a 12-bp insertion located in the 5′ region of cagA sequence. Methods The prevalence of 12-bp insertion in cagA in Okinawa and the United States (U.S.) was examined by DNA sequencing. We then designed the primer pair which can detect the 12-bp insertion only by polymerase chain reaction (PCR). The prevalence of strains with 12-bp insertion was examined in 336 strains isolated from Okinawa by PCR. Results In case of Western-type cagA/vacA s1m2 strains, the prevalence of 12-bp insertion was significantly higher in strains isolated from Okinawa than that from the U.S. (P = 0.002). Phylogenetic tree showed that strains with 12-bp insertion formed two individual clusters within J-Western-type cagA subtype; one is from Okinawa and another is from the U.S. Our designed primer set showed high sensitivity (100%) and specificity (90.8%) in Okinawa. The 12-bp insertion was found in 23.7%, 14.3%, 4.2%, and 4.0% of strains with duodenal ulcer (DU), gastritis, gastric cancer (GC), and gastric ulcer (GU), respectively (P < 0.001 for DU vs. GU) in Okinawa. Conclusions Although the mechanisms are unknown, the presence of 12-bp insertion was associated with the presence of DU and might have a suppressive action on GU and GC. PMID:23190390

  4. Possible Food Sources of Macrozoobenthos in the Manko Mangrove Ecosystem, Okinawa (Japan): A Stable Isotope Analysis Approach

    PubMed Central

    Wardiatno, Yusli; Mardiansyah; Prartono, Tri; Tsuchiya, Makoto

    2015-01-01

    Identifying potential food sources in mangrove ecosystems is complex because of the multifarious inputs from both land and sea. This study, which was conducted in the Manko mangrove ecosystem of Okinawa, Japan, determined the composition of the stable isotopes δ13C and δ15N in primary producers and macrozoobenthos to estimate the potential food sources assimilated and to elucidate the target trophic levels of the macrozoobenthos. We measured the two stable isotope signatures of three gastropods (Cerithidea sp., Cassidula mustelina, Peronia verruculata), two crabs (Grapsidae sp., Uca sp.), mangrove tree (Kandelia candel) leaves, and sediment from the mangrove ecosystem. The respective carbon and nitrogen isotope signature results were as follows: −22.4‰ and 8.6‰ for Cerithidea sp., −25.06‰ and 8‰ for C. mustelina, −22.58‰ and 8‰ for P. verruculata, −24.3‰ and 10.6‰ for unidentified Grapsidae, −21.87 ‰ and 11.5 ‰ for Uca sp., −29.81‰ and 11‰ for K. candel, and −24.23‰ and 7.2‰ for the sediment. The stable isotope assimilation signatures of the macrozoobenthos indicated sediment as their food source. Considering the trophic levels, the stable isotope values may also indicate that the five macrozoobenthos species were secondary or higher consumers. PMID:26019747

  5. Possible food sources of macrozoobenthos in the manko mangrove ecosystem, okinawa (Japan): a stable isotope analysis approach.

    PubMed

    Wardiatno, Yusli; Mardiansyah; Prartono, Tri; Tsuchiya, Makoto

    2015-04-01

    Identifying potential food sources in mangrove ecosystems is complex because of the multifarious inputs from both land and sea. This study, which was conducted in the Manko mangrove ecosystem of Okinawa, Japan, determined the composition of the stable isotopes δ(13)C and δ(15)N in primary producers and macrozoobenthos to estimate the potential food sources assimilated and to elucidate the target trophic levels of the macrozoobenthos. We measured the two stable isotope signatures of three gastropods (Cerithidea sp., Cassidula mustelina, Peronia verruculata), two crabs (Grapsidae sp., Uca sp.), mangrove tree (Kandelia candel) leaves, and sediment from the mangrove ecosystem. The respective carbon and nitrogen isotope signature results were as follows: -22.4‰ and 8.6‰ for Cerithidea sp., -25.06‰ and 8‰ for C. mustelina, -22.58‰ and 8‰ for P. verruculata, -24.3‰ and 10.6‰ for unidentified Grapsidae, -21.87 ‰ and 11.5 ‰ for Uca sp., -29.81‰ and 11‰ for K. candel, and -24.23‰ and 7.2‰ for the sediment. The stable isotope assimilation signatures of the macrozoobenthos indicated sediment as their food source. Considering the trophic levels, the stable isotope values may also indicate that the five macrozoobenthos species were secondary or higher consumers.

  6. Measurement of high turbidity water behavior by ADCP at Izena Caldera in Okinawa Trough

    NASA Astrophysics Data System (ADS)

    Furuta, S.; Arai, R.; Yamazaki, T.

    2012-12-01

    Hydrothermal processes associated with spreading centers of plate-tectonics form hydrothermal activities and the resulted seafloor massive sulfide (SMS) deposits. Given that the SMS deposits found in the western Pacific have been considered to be potential sources of gold, silver, copper, zinc, and lead, there is a strong possibility that they will be mined near future. In order to take measures against environmental impacts during the mining of SMS deposits, it is important to measure components of hydrothermal origin with high temporal and spatial resolution on site, and to understand the mass circulation and transfer systems around the mining area. The Acoustic Doppler Current Profiler (ADCP) is effective tool for measurement of current field in water column in general. In addition, it is also useful for detection of turbidity profile in the water column simultaneously, applying an acoustic propagation model to the data. Izena Caldera, which is 3 km in short, 6 km in long axes and is generically from1,600 m to 1,700 m in depth, is located at the northwest of Okinawa Island. There both attractive SMS deposits and active hydrothermal vent systems have been confirmed. Because of the active vent systems and a bowl-like geographical structure, a quite unique mass circulation and transfer background condition is expected in Izena Caldera. The mining operation will add plenty of suspended materials into the background condition. For a primary understanding of the background condition, the authors analyzed the ADCP data and found two high-turbidity water zones in Izena Caldera and their behavior relationships with the current structure. The vertical downward current affects one of the high-turbidity zones around 1,220 m in depth. The current velocity against north-south direction and east-west direction affects the other high-turbidity zone 1,550 m in depth. Also the zones are recognized the higher synchronization with the lumi-solar diurnal tide, about 24 hours. The

  7. Anaplasma marginale infection in a Japanese Black cow 13 years after eradication of Rhipicephalus (Boophilus) microplus in Okinawa, Japan.

    PubMed

    Ooshiro, Mamoru; Zakimi, Satoshi; Matsukawa, Yoshimasa; Yafuso, Makoto; Katagiri, Yoshito; Inokuma, Hisashi

    2009-03-23

    In October 2007, a 15-year-old Japanese Black cow on Ishigaki Island, Okinawa, Japan, was diagnosed with Anaplasma marginale infection based on clinical symptoms, blood examination, smear observation, 16S rRNA and groEL gene sequence analysis, and the result of a CF test. The cow was introduced into the farm from mainland Japan as a calf in 1993, one year before the eradication of Rhipicephalus (Boophilus) microplus, the main vector of A. marginale in Okinawa Prefecture. It is possible that the cow was first infected with A. marginale as a calf in Ishigaki Island and had been persistently infected since then. This is the first reported clinical case of A. marginale infection of cattle since the eradication of R. microplus in Okinawa Prefecture. Additional analysis of major surface protein 1alpha amino acid sequences revealed that the A. marginale Okinawa strain presented four new repeat forms which were not seen in other strains. This indicates that the Okinawa strain may be a unique geographical variant of A. marginale.

  8. Massively parallel sequencing of single cells by epicPCR links functional genes with phylogenetic markers.

    PubMed

    Spencer, Sarah J; Tamminen, Manu V; Preheim, Sarah P; Guo, Mira T; Briggs, Adrian W; Brito, Ilana L; A Weitz, David; Pitkänen, Leena K; Vigneault, Francois; Juhani Virta, Marko P; Alm, Eric J

    2016-02-01

    Many microbial communities are characterized by high genetic diversity. 16S ribosomal RNA sequencing can determine community members, and metagenomics can determine the functional diversity, but resolving the functional role of individual cells in high throughput remains an unsolved challenge. Here, we describe epicPCR (Emulsion, Paired Isolation and Concatenation PCR), a new technique that links functional genes and phylogenetic markers in uncultured single cells, providing a throughput of hundreds of thousands of cells with costs comparable to one genomic library preparation. We demonstrate the utility of our technique in a natural environment by profiling a sulfate-reducing community in a freshwater lake, revealing both known sulfate reducers and discovering new putative sulfate reducers. Our method is adaptable to any conserved genetic trait and translates genetic associations from diverse microbial samples into a sequencing library that answers targeted ecological questions. Potential applications include identifying functional community members, tracing horizontal gene transfer networks and mapping ecological interactions between microbial cells.

  9. User Instructions for the 1991 Version of the EPIC Research Code

    DTIC Science & Technology

    1992-01-01

    EPIC Code, Finite Element, Computations, hligh Velocity Impact, 142 Explosive Detonation 16 . PRICE CODE 17 SECURITY CLASSIFICATION 18...Postprocessor Input Data for Time Plots ........................... 15 9 Materials in the EPIC Material Library ............................ 16 10 Nodal...Example . ............................ 21 15 Summary of Individual and Composite Element Options ............... 22 16 Rod Shape Geom etry

  10. EPICS-based control and data acquisition for the APS slope profiler (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Sullivan, Joseph; Assoufid, Lahsen; Qian, Jun; Jemian, Peter R.; Mooney, Tim; Rivers, Mark L.; Goetze, Kurt; Sluiter, Ronald L.; Lang, Keenan

    2016-09-01

    The motion control, data acquisition and analysis system for APS Slope Measuring Profiler was implemented using the Experimental Physics and Industrial Control System (EPICS). EPICS was designed as a framework with software tools and applications that provide a software infrastructure used in building distributed control systems to operate devices such as particle accelerators, large experiments and major telescopes. EPICS was chosen to implement the APS Slope Measuring Profiler because it is also applicable to single purpose systems. The control and data handling capability available in the EPICS framework provides the basic functionality needed for high precision X-ray mirror measurement. Those built in capabilities include hardware integration of high-performance motion control systems (3-axis gantry and tip-tilt stages), mirror measurement devices (autocollimator, laser spot camera) and temperature sensors. Scanning the mirror and taking measurements was accomplished with an EPICS feature (the sscan record) which synchronizes motor positioning with measurement triggers and data storage. Various mirror scanning modes were automatically configured using EPICS built-in scripting. EPICS tools also provide low-level image processing (areaDetector). Operation screens were created using EPICS-aware GUI screen development tools.

  11. An Evaluation of OCLC's EPIC as a Resource for Subject Access to Videos.

    ERIC Educational Resources Information Center

    Palmer, Joseph W.

    1992-01-01

    An examination of OCLC's EPIC service and standard video reference tools revealed that EPIC was more comprehensive in finding video titles on the popular or specialized topics of bonsai, genealogy, karate, and holography, because of its keyword searching ability on the massive OCLC database. (11 references) (EA)

  12. EPIC Simulations of Crop Yields and Soil Organic Carbon in Iowa

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Depending on management, soil organic carbon is source or sink of atmospheric carbon dioxide. The Environmental Policy Integrated Climate (EPIC) model is a useful tool for predicting impacts of soil management on crop yields and soil organic carbon. We used EPIC-Century to simulate changes in soil o...

  13. Correspondence and Contradiction in Ancient Greek Society and Education: Homer's Epic Poetry and Plato's Early Dialogues.

    ERIC Educational Resources Information Center

    Sichel, Betty A.

    1983-01-01

    Homer's epic poetry illustrates correspondence between society's needs and the values stressed in education, while Socrates' thought uncovers contradictions between social and educational values and seeks a new form of correspondence. Examples from the Epics and Plato's early dialogues trace changing educational attitudes among the Classical…

  14. The "epic" challenge of optimizing antimicrobial stewardship: the role of electronic medical records and technology.

    PubMed

    Kullar, Ravina; Goff, Debra A; Schulz, Lucas T; Fox, Barry C; Rose, Warren E

    2013-10-01

    Antimicrobial stewardship programs (ASPs) are established means for institutions to improve patient outcomes while reducing the emergence of resistant bacteria. With the increased adoption and evolution of electronic medical records (EMRs), there is a need to assimilate the tools of ASPs into EMRs, using decision support and feedback. Third-party software vendors provide the mainstay for integration of individual institutional EMR and ASP efforts. Epic is the leading implementer of EMR technology in the United States. A collaboration of physicians and pharmacists are working closely with Epic to provide a more comprehensive platform of ASP tools that may be institutionally individualized. We review the historical relationship between ASPs and the EMR, cite examples of Epic stewardship tools from 3 academic medical centers' ASPs, discuss limitations of these Epic tools, and conclude with the current process in evolution to integrate ASP tools and decision support capacities directly into Epic's EMR.

  15. EPICS and WANs: Tradeoffs between Isolation, Security, Robustness, and Transparency

    SciTech Connect

    J. Hill; K. Furukawa; S. Hunt; A. Johnson; R. Lange; J. Sage; E. Williams

    2003-10-01

    The Experimental Physics and Industrial Control System (EPICS)[1] was originally designed for use in local area networks (LANs). Today, the system is routinely deployed into complex wide area networks (WANs) using specialized configuration options and proxy gateways. There are advantages to the current approach including robustness and control over isolation and security. However, some important features are missing including WAN transparent configuration, resource location monitoring, detection of name space collisions during installation, and wildcard queries into the resource attribute space. The paper discusses these issues in detail exploring the relative tradeoffs between different solutions and including our plans for future enhancements.

  16. [Identification and characterization of Panton-Valentine leukocidin-positive Staphylococcus aureus isolated in Okinawa, Japan].

    PubMed

    Miyagi, Ayano; Tokashiki, Yoshino T; Nakasone, Isamu; Kisanuki, Kyoko; Nago, Tamami T; Yamane, Nobuhisa

    2010-09-01

    We experienced hospital-acquired infection in March 2008 that three nurses became infected with Panton-Valentine leukocidin (PVL)-positive methicillin-resistant Staphylococcus aureus (MRSA). Accordingly, we performed the retrospective study to determine the prevalence of PVL-positive S. aureus in Okinawa. A total of 731 clinical isolates, consisting of 600 MRSA and 131 methicillin-susceptible isolates in Okinawa, were included. Of the isolates, 16 were positive for PVL gene (lukS-PV-lukF-PV). All the PVL-positive isolates were MRSA, and the first appeared in March 2008. The isolates from the University Hospital were characterized as staphylococcal chromosomal cassette mec type IVa. Through the analysis of pulsed-field gel electrophoresis (PFGE), 16 PVL-positive MRSA isolates were divided in three groups. One isolate (the first group) from the other hospital was less similar (< 40% similarity) when compared with the remaining 15 isolates from the University Hospital. The second group consisted of two respective paired isolates from the same department wards, and those were very similar with each other, indicating possible patient-to-patient transmission. The 11 isolates were characterized as the third group with >80% similarity. The DiversiLab system (bioMérieux) based on repetitive-sequence-based PCR typing demonstrated that the isolates of the third group were similar and indistinguishable with the strains of USA300 clone. However, the first and second groups were not determinable which USA clone was the origin. With these, we could conclude that the PVL-positive MRSA close to USA300 clone first appeared in Okinawa in 2008 and is now becoming prevalent multi-focally. Also, person-to-person transmission is already likely in a hospital setting.

  17. Experimental Physics and Industrial Control System (EPICS): Application source/release control for EPICS R3.11.6

    SciTech Connect

    Zieman, B.; Kraimer, M.

    1994-03-25

    This manual describes a set of tools that can be used to develop software for EPICS based control systems. It provides the following features: Multiple applications; the entire system is composed of an arbitrary number of applications: Source/Release Control; all files created or modified by the applications developers can be put under sccs (a UNIX Source/Release control utility): Multiple Developers; it allows a number of applications developers to work separately during the development phase but combine their applications for system testing and for a production system; Makefiles: makefiles are provided to automatically rebuild various application components. For C and state notation programs, Imagefiles are provided.

  18. Data acquisition system for KOMAC beam monitoring using EPICS middleware

    NASA Astrophysics Data System (ADS)

    Song, Young-Gi

    2015-10-01

    The beam diagnostics instrument used to measure the beam properties is one of the important devices for the 100-MeV proton linear accelerator of the KOrea Multi-purpose Accelerator Complex (KOMAC). A data acquisition system (DAQ) is required to collect the output beam signals conditioned in the analog front-end circuitry of a beam loss monitor (BLM) and a beam position monitor (BPM). The electrical beam signal must be digitized, and the sampling has to be synchronized to a global timing system that produces a pulse signal for the pulsed beam operation. The digitized data must be accessible by the experimental physics and industrial control system (EPICS)-based control system, which manages all accelerator control. An input output controller (IOC), which runs Linux on a central process unit (CPU) module with a peripheral component interconnect (PCI) express-based Analog-to-digital converter (ADC) card, has been adopted to satisfy the requirements. An associated Linux driver and EPICS device support module have also been developed. The IOC meets the requirements, and the development and maintenance of software for the IOC is very efficient. In this paper, the details of the DAQ system for the BLM and the BPM with the introduction of the KOMAC beam-diagnostics devices, along with the performance, are described.

  19. Electrolysis Performance Improvement Concept Study (EPICS) Flight Experiment-Reflight

    NASA Technical Reports Server (NTRS)

    Schubert, F. H.

    1997-01-01

    The Electrolysis Performance Improvement Concept Study (EPICS) is a flight experiment to demonstrate and validate in a microgravity environment the Static Feed Electrolyzer (SFE) concept which was selected for the use aboard the International Space Station (ISS) for oxygen (O2) generation. It also is to investigate the impact of microgravity on electrochemical cell performance. Electrochemical cells are important to the space program because they provide an efficient means of generating O2 and hydrogen (H2) in space. Oxygen and H2 are essential not only for the survival of humans in space but also for the efficient and economical operation of various space systems. Electrochemical cells can reduce the mass, volume and logistical penalties associated with resupply and storage by generating and/or consuming these gases in space. An initial flight of the EPICS was conducted aboard STS-69 from September 7 to 8, 1995. A temperature sensor characteristics shift and a missing line of software code resulted in only partial success of this initial flight. Based on the review and recommendations of a National Aeronautics and Space Administration (NASA) Johnson Space Center (JSC) review team a reflight activity was initiated to obtain the remaining desired results, not achieved during the initial flight.

  20. JBluIce-EPICS control system for macromolecular crystallography.

    PubMed

    Stepanov, Sergey; Makarov, Oleg; Hilgart, Mark; Pothineni, Sudhir Babu; Urakhchin, Alex; Devarapalli, Satish; Yoder, Derek; Becker, Michael; Ogata, Craig; Sanishvili, Ruslan; Venugopalan, Nagarajan; Smith, Janet L; Fischetti, Robert F

    2011-03-01

    The trio of macromolecular crystallography beamlines constructed by the General Medicine and Cancer Institutes Collaborative Access Team (GM/CA-CAT) in Sector 23 of the Advanced Photon Source (APS) have been in growing demand owing to their outstanding beam quality and capacity to measure data from crystals of only a few micrometres in size. To take full advantage of the state-of-the-art mechanical and optical design of these beamlines, a significant effort has been devoted to designing fast, convenient, intuitive and robust beamline controls that could easily accommodate new beamline developments. The GM/CA-CAT beamline controls are based on the power of EPICS for distributed hardware control, the rich Java graphical user interface of Eclipse RCP and the task-oriented philosophy as well as the look and feel of the successful SSRL BluIce graphical user interface for crystallography. These beamline controls feature a minimum number of software layers, the wide use of plug-ins that can be written in any language and unified motion controls that allow on-the-fly scanning and optimization of any beamline component. This paper describes the ways in which BluIce was combined with EPICS and converted into the Java-based JBluIce, discusses the solutions aimed at streamlining and speeding up operations and gives an overview of the tools that are provided by this new open-source control system for facilitating crystallographic experiments, especially in the field of microcrystallography.

  1. The EPIC-MOS Particle-Induced Background Spectra

    NASA Technical Reports Server (NTRS)

    Kuntz, K. D.; Sowden, S. L.

    2007-01-01

    In order to analyse diffuse emission that fills the field of view, one must accurately characterize the instrumental backgrounds. For the XMM-Newton EPIC instrument these backgrounds include a temporally variable "quiescent" component. as well as the strongly variable soft proton contamination. We have characterized the spectral and spatial response of the EPIC detectors to these background components and have developed tools to remove these backgrounds from observations. The "quiescent" component was characterized using a combination of the filter-wheel-closed data and a database of unexposed-region data. The soft proton contamination was characterized by differencing images and spectra taken during flared and flare-free intervals. After application of our modeled backgrounds, the differences between independent observations of the same region of "blank sky" are consistent with the statistical uncertainties except when there is clear spectral evidence of solar wind charge exchange emission. Using a large sample of blank sky data, we show that strong magnetospheric SWCX emission requires elevated solar wind fluxes; observations through the densest part of the magnetosheath are not necessarily strongly contaminated with SWCX emission.

  2. JBluIce-EPICS control system for macromolecular crystallography.

    SciTech Connect

    Stepanov, S.; Makarov, O.; Hilgart, M.; Pothineni, S.; Urakhchin, A.; Devarapalli, S.; Yoder, D.; Becker, M.; Ogata, C.; Sanishvili, R.; Nagarajan, V.; Smith, J. L.; Fischetti, R. F.

    2011-01-01

    The trio of macromolecular crystallography beamlines constructed by the General Medicine and Cancer Institutes Collaborative Access Team (GM/CA-CAT) in Sector 23 of the Advanced Photon Source (APS) have been in growing demand owing to their outstanding beam quality and capacity to measure data from crystals of only a few micrometres in size. To take full advantage of the state-of-the-art mechanical and optical design of these beamlines, a significant effort has been devoted to designing fast, convenient, intuitive and robust beamline controls that could easily accommodate new beamline developments. The GM/CA-CAT beamline controls are based on the power of EPICS for distributed hardware control, the rich Java graphical user interface of Eclipse RCP and the task-oriented philosophy as well as the look and feel of the successful SSRL BluIce graphical user interface for crystallography. These beamline controls feature a minimum number of software layers, the wide use of plug-ins that can be written in any language and unified motion controls that allow on-the-fly scanning and optimization of any beamline component. This paper describes the ways in which BluIce was combined with EPICS and converted into the Java-based JBluIce, discusses the solutions aimed at streamlining and speeding up operations and gives an overview of the tools that are provided by this new open-source control system for facilitating crystallographic experiments, especially in the field of microcrystallography.

  3. Sources and burial of organic carbon in the middle Okinawa Trough during late Quaternary paleoenvironmental change

    NASA Astrophysics Data System (ADS)

    Shao, Hebin; Yang, Shouye; Cai, Feng; Li, Chao; Liang, Jie; Li, Qing; Hyun, Sangmin; Kao, Shuh-Ji; Dou, Yanguang; Hu, Bangqi; Dong, Gang; Wang, Feng

    2016-12-01

    The sediments from a piston core ECS12A recovered from the middle Okinawa Trough in the East China Sea were measured for total organic carbon (TOC), total nitrogen (TN), and other biogenic elements to provide constraints on the sources and burial rates of depositional organic matter (OM) and on the changes in primary productivity since 19 ka. The last glacial sediments (ca. 17-19 ka) are characterized by low contents of biogenic elements and well-developed turbidite layers, suggesting low primary productivity but a high component of terrigenous sediment. With rising sea level and enhanced monsoons during the deglacial period, the proportion of marine OM gradually increased. The least negative δ13Corg values and the smallest grain size of sediments deposited ca. 10-14.5 ka indicate high primary productivity and a sedimentary environment dominated by the marine component. The source and burial rates of OM in the Holocene sediments (ca. 5.4-10 ka) were largely controlled by the intensification of the Kuroshio Current, which caused a slight decrease in primary productivity, but strengthened the oceanic circulation in the East China Sea. Overall, the source-to-sink process of OM in the Okinawa Trough is governed by complex interactions between sea level, climate and ocean circulation.

  4. Genotypic diversity of Theileria orientalis detected from cattle grazing in Kumamoto and Okinawa prefectures of Japan.

    PubMed

    Yokoyama, Naoaki; Ueno, Akio; Mizuno, Daisuke; Kuboki, Noritaka; Khukhuu, Altangerel; Igarashi, Ikuo; Miyahara, Tokuji; Shiraishi, Takashi; Kudo, Ryuta; Oshiro, Mamoru; Zakimi, Satoshi; Sugimoto, Chihiro; Matsumoto, Kotaro; Inokuma, Hisashi

    2011-03-01

    Theileria orientalis is a benign protozoan species that is widely distributed in Japan, yet sometimes causes serious economic losses in the livestock industry. In this study, we conducted a molecular survey based on genes encoding the major piroplasm surface protein (MPSP) and p23 for T. orientalis detected in cattle grazing in southern areas of Japan, consisting of 2 farms in Kumamoto prefecture (Aso and Kuma districts) and 3 farms in Okinawa prefecture (Ishigaki, Iriomote, and Yonaguni Islands). High prevalence rates of T. orientalis infection were shown in all the cattle populations using the diagnostic MPSP- and p23-PCR assays. Phylogenetic analyses revealed 4 MPSP genotypes and 3 p23 genotypes. Furthermore, MPSP genotype-specific PCR methods were developed in this study and wide distributions of 5-district genotypes of T. orientalis were observed for the examined farms. Our results indicate that at least 5 types of T. orientalis exist in Kumamoto and Okinawa prefectures of Japan and that genotype-specific PCR assays are highly applicable for the quarantine of transported cattle and for epidemiological surveys of bovine theileriosis in Japan.

  5. Geological Structures of the South Okinawa Trough based on Seismic Reflection Data

    NASA Astrophysics Data System (ADS)

    Fan, M.; Liu, C.; Teng, L. S.

    2011-12-01

    The Southern Okinawa Trough (SOT) located offshore northeastern Taiwan is an extensional basin north of the Ryukyu Island Arc that opens toward Taiwan. In order to better understand the geological processes in the Southern Okinawa Trough, we collect all the available multi-channel seismic reflection data, reprocess some of them to improve the data quality, and interpret 22 seismic reflection profiles. A structural map, which shows the distribution of fault structures and submarine volcanoes in the study area, is compiled with the aid of seismic sequence analysis. We found that normal faults developed in both the northern and southern flanks of the SOT, and also in the axial area where volcanic extrusions are abundant, suggesting that the SOT is presently undergoing active extension. Some deeply rooted compressional structures are observed below the younger normal faults, which may indicate that the area offshore northern Taiwan was once in a convergent tectonic environment. We use seismic and bathymetry data to discuss the fault activities and related tectonic processes, also examine the volcanic activities and their geological environment.

  6. Reproductive traits of the Ryukyu long-furred rat (Diplothrix legata) on Okinawa-jima Island.

    PubMed

    Okano, Tsukasa; Nakata, Katsuhi; Nakaya, Yumiko; Nagamine, Takashi; Onuma, Manabu

    2015-06-01

    The Ryukyu long-furred rat, Diplothrix legata, is a large rodent distributed only on Amami-ohshima Island, Tokuno-shima Island and Okinawa-jima Island, Japan. This animal is endangered as a result of deforestation, predation by introduced carnivores and mortality caused by vehicles. We performed theriogenological examinations of 32 male and 25 female Ryukyu long-furred rats carcasses collected from wild populations on northern Okinawa-jima Island from December 2005 to September 2013. Adult males had remarkably large preputial glands. Seminiferous diameter of adult was significantly small (136 ± 28 µm, n=8) from April to August. Numerous spermatozoa were observed from September through February, and seminiferous diameter was significantly large (216 ± 27 µm, n=12) during this time in adults; testes length changed in a similar pattern. These findings indicate that the mating season may occur from September through February. Size (body length) at sexual maturity was estimated to be >560 mm in both sexes. From observation of corpora lutea and placental scars, litter size was estimated to range from 2 to 12 (average=6, n=4). These results provide fundamental knowledge that will be beneficial for in situ and ex situ conservation of this rare species.

  7. Characteristics of radon and thoron exhalation rates in Okinawa, subtropical region of Japan.

    PubMed

    Shiroma, Y; Kina, S; Fujitani, T; Hosoda, M; Sorimachi, A; Ishikawa, T; Sahoo, S K; Tokonami, S; Furukawa, M

    2012-11-01

    Radon and thoron exhalation rates from the ground surface were estimated in three islands of Okinawa Prefecture, a subtropical region of Japan. In situ measurements of the exhalation rates were conducted at a total of 88 points using an accumulation technique with a ZnS(Ag) scintillation detector. The radon and thoron exhalation rates were calculated to be 1-137 (arithmetic mean: 21) mBq m(-2) s(-1) and 32-6244 (1801) mBq m(-2) s(-1), respectively. In the surface soil samples collected at 53 measurement points, (238)U and (232)Th series concentrations were estimated to be 17.9-254.0 (64.0) Bq kg(-1) dry and 17.8-136.1 (58.8) Bq kg(-1) dry, respectively. The maximum rates and concentrations were observed in the dark red soil area. Recent studies strongly suggest that the base material of the soils may be the eolian dust derived from the southeastern part of China, a high background radiation area. The eolian dust is, therefore, considered to be an enhancer for the radon and thoron exhalations in Okinawa.

  8. Spatial variations in the frequency-magnitude distribution of earthquakes in the southwestern Okinawa Trough

    NASA Astrophysics Data System (ADS)

    Lin, J.-Y.; Sibuet, J.-C.; Lee, C.-S.; Hsu, S.-K.; Klingelhoefer, F.

    2007-04-01

    The relations between the frequency of occurrence and the magnitude of earthquakes are established in the southern Okinawa Trough for 2823 relocated earthquakes recorded during a passive ocean bottom seismometer experiment. Three high b-values areas are identified: (1) for an area offshore of the Ilan Plain, south of the andesitic Kueishantao Island from a depth of 50 km to the surface, thereby confirming the subduction component of the island andesites; (2) for a body lying along the 123.3°E meridian at depths ranging from 0 to 50 km that may reflect the high temperature inflow rising up from a slab tear; (3) for a third cylindrical body about 15 km in diameter beneath the Cross Backarc Volcanic Trail, at depths ranging from 0 to 15 km. This anomaly might be related to the presence of a magma chamber at the base of the crust already evidenced by tomographic and geochemical results. The high b-values are generally linked to magmatic and geothermal activities, although most of the seismicity is linked to normal faulting processes in the southern Okinawa Trough.

  9. Estimation of radon emanation coefficient for representative soils in Okinawa, Japan.

    PubMed

    Shiroma, Y; Hosoda, M; Ishikawa, T; Sahoo, S K; Tokonami, S; Furukawa, M

    2015-11-01

    Radon ((222)Rn) emanation coefficients for the representative soils distributed in Okinawa Island, Japan, have been estimated empirically. Arithmetic means of the emanation coefficients for dry and moist conditions were calculated to be 0.19 and 0.29, respectively. In Okinawa, the soils are traditionally classified into three types, namely the dark red soils, the residual regosols and the red and yellow soils. The dark red soils have relatively high coefficients. The residual regosols and the red and yellow soils have relatively low coefficients. To investigate the variable factor of the emanation coefficients, analyses of radioactive elements and physical properties have also been performed on the soils. For the dark red soils, the contents of the fine particle and the (226)Ra are relatively higher than those for the other soils. Based on these results, it is suggested that the variation in the radon emanation coefficient is mainly regulated by the (226)Ra concentration, the particle sizes and the water contents of the soils.

  10. Litarcturus kexueiae sp. nov., a new deep-sea isopod from the Okinawa Trough (Crustacea, Isopoda, Valvifera, Antarcturidae).

    PubMed

    Liu, Wenliang; Sha, Zhongli

    2015-09-11

    A new species of the genus Litarcturus Brandt, 1990, L. kexueiae sp. nov., collected from deep sea of the Okinawa Trough, is described and illustrated. It is readily distinguished from the other seven species of the genus by bearing long supraocular spines about as long as the head and posterolateral pleotelsonic spines overreaching the pleotelson apex.

  11. Assessment of Spacecraft Systems Integration Using the Electric Propulsion Interactions Code (EPIC)

    NASA Technical Reports Server (NTRS)

    Mikellides, Ioannis G.; Kuharski, Robert A.; Mandell, Myron J.; Gardner, Barbara M.; Kauffman, William J. (Technical Monitor)

    2002-01-01

    SAIC is currently developing the Electric Propulsion Interactions Code 'EPIC', an interactive computer tool that allows the construction of a 3-D spacecraft model, and the assessment of interactions between its subsystems and the plume from an electric thruster. EPIC unites different computer tools to address the complexity associated with the interaction processes. This paper describes the overall architecture and capability of EPIC including the physics and algorithms that comprise its various components. Results from selected modeling efforts of different spacecraft-thruster systems are also presented.

  12. EPIC 2.0: a second youth for XMM-Newton's workhorse.

    NASA Astrophysics Data System (ADS)

    Molendi, S.

    2016-06-01

    While much has been achieved with the EPIC experiment on board XMM-Newton, in several areas, we can get even more. In this presentation I will discuss results we have recently obtained, including those from an "all archive" analysis of the EPIC background. I will show how these, along with others, can be used to improve measures of diffuse low surface brightness sources. I will also illustrate how the work we are doing on EPIC is contributing to the design of experiments on the next Large European X-ray mission: Athena.

  13. Microbial community in a sediment-hosted CO2 lake of the southern Okinawa Trough hydrothermal system

    PubMed Central

    Inagaki, Fumio; Kuypers, Marcel M. M.; Tsunogai, Urumu; Ishibashi, Jun-ichiro; Nakamura, Ko-ichi; Treude, Tina; Ohkubo, Satoru; Nakaseama, Miwako; Gena, Kaul; Chiba, Hitoshi; Hirayama, Hisako; Nunoura, Takuro; Takai, Ken; Jørgensen, Bo B.; Horikoshi, Koki; Boetius, Antje

    2006-01-01

    Increasing levels of CO2 in the atmosphere are expected to cause climatic change with negative effects on the earth's ecosystems and human society. Consequently, a variety of CO2 disposal options are discussed, including injection into the deep ocean. Because the dissolution of CO2 in seawater will decrease ambient pH considerably, negative consequences for deep-water ecosystems have been predicted. Hence, ecosystems associated with natural CO2 reservoirs in the deep sea, and the dynamics of gaseous, liquid, and solid CO2 in such environments, are of great interest to science and society. We report here a biogeochemical and microbiological characterization of a microbial community inhabiting deep-sea sediments overlying a natural CO2 lake at the Yonaguni Knoll IV hydrothermal field, southern Okinawa Trough. We found high abundances (>109 cm−3) of microbial cells in sediment pavements above the CO2 lake, decreasing to strikingly low cell numbers (107 cm−3) at the liquid CO2/CO2-hydrate interface. The key groups in these sediments were as follows: (i) the anaerobic methanotrophic archaea ANME-2c and the Eel-2 group of Deltaproteobacteria and (ii) sulfur-metabolizing chemolithotrophs within the Gamma- and Epsilonproteobacteria. The detection of functional genes related to one-carbon assimilation and the presence of highly 13C-depleted archaeal and bacterial lipid biomarkers suggest that microorganisms assimilating CO2 and/or CH4 dominate the liquid CO2 and CO2-hydrate-bearing sediments. Clearly, the Yonaguni Knoll is an exceptional natural laboratory for the study of consequences of CO2 disposal as well as of natural CO2 reservoirs as potential microbial habitats on early Earth and other celestial bodies. PMID:16959888

  14. Molecular isotopic evidence for anaerobic oxidation of methane in deep-sea hydrothermal vent environment in Okinawa Trough

    NASA Astrophysics Data System (ADS)

    Uchida, M.; Takai, K.; Inagaki, F.

    2003-04-01

    Large amount of methane in anoxic marine sediments as well as cold seeps and hydrothermal vents is recycled through for an anoxic oxidation of methane processes. Now that combined results of field and laboratory studies revealed that microbiological activity associated with syntrophic consortium of archaea performing reversed methanogenesis and sulfate-reducing bacteria is significant roles in methane recycling, anaerobic oxidation of methane (AOM). In this study, we examined the diversity of archaeal and bacterial assemblages of AOM using compound-specific stable carbon isotopic and phylogenetic analyses. "Iheya North" in Okinawa Trough is sediment-rich, back arc type hydrothermal system (27^o47'N, 126^o53'E). Sediment samples were collected from three sites where are "bubbling sites", yellow-colored microbial mats are formed with continuous bubbling from the seafloor bottom, vent mussel's colonies site together with slowly venting and simmering, and control site off 100 m distance from thermal vent. This subsea floor structure has important effect in the microbial ecosystem and interaction between their activity and geochemical processes in the subseafloor habitats. Culture-independent, molecular biological analysis clearly indicated the presence of thermophilic methanogens in deeper area having higher temperatures and potential activity of AMOs consortium in the shallower area. AMO is composed with sulfate-reducing bacterial components (Desulfosarcina spp.) and anoxic methane oxidizing archaea (ANME-2). These results were consistent with the results of compound-specific carbon analysis of archaeal biomarkers. They showed extremely depleted 13C contents (-80 ppm ˜ -100 ppm), which also appeared to be capable of directly oxidizing methane.

  15. Radiation effects in wild terrestrial vertebrates - the EPIC collection.

    PubMed

    Sazykina, Tatiana; Kryshev, Ivan I

    2006-01-01

    The paper presents data on radiation effects in populations of wild vertebrate animals inhabiting contaminated terrestrial ecosystems. The data were extracted from the database "Radiation effects on biota", compiled within the framework of the EC Project EPIC (2000-2003). The data collection, based on publications in Russian, demonstrates radiation effects in the areas characterized with high levels of radionuclides (Kyshtym radioactive trace; "spots" of enhanced natural radioactivity in the Komi region of Russia; territories contaminated from the Chernobyl fallout). The data covers a wide range of exposures from acute accidental irradiation to lifetime exposures at relatively low dose rates. Radiation effects include mortality, changes in reproduction, decrease of health, ecological effects, cytogenetic effects, adaptation to radiation, and others. Peculiarities of radiation effects caused by different radionuclides are described, also the severity of effects as they appear in different organisms (e.g. mice, frogs, birds, etc.).

  16. Using EPICS enabled industrial hardware for upgrading control systems

    SciTech Connect

    Bjorkland, Eric A; Veeramani, Arun; Debelle, Thierry

    2009-01-01

    Los Alamos National Laboratory has been working with National Instruments (NI) and Cosy lab to implement EPICS Input Output Controller (IOC) software that runs directly on NI CompactRIO Real Time Controller (RTC) and communicates with NI LabVIEW through a shared memory interface. In this presentation, we will discuss our current progress in upgrading the control system at the Los Alamos Neutron Science Centre (LANSCE) and what we have learned about integrating CompactRIO into large experimental physics facilities. We will also discuss the implications of using Channel Access Server for LabVIEW which will enable more commercial hardware platforms to be used in upgrading existing facilities or in commissioning new ones.

  17. Neutron Source Facility Training Simulator Based on EPICS

    SciTech Connect

    Park, Young Soo; Wei, Thomas Y.; Vilim, Richard B.; Grelle, Austin L.; Dworzanski, Pawel L.; Gohar, Yousry

    2015-01-01

    A plant operator training simulator is developed for training the plant operators as well as for design verification of plant control system (PCS) and plant protection system (PPS) for the Kharkov Institute of Physics and Technology Neutron Source Facility. The simulator provides the operator interface for the whole plant including the sub-critical assembly coolant loop, target coolant loop, secondary coolant loop, and other facility systems. The operator interface is implemented based on Experimental Physics and Industrial Control System (EPICS), which is a comprehensive software development platform for distributed control systems. Since its development at Argonne National Laboratory, it has been widely adopted in the experimental physics community, e.g. for control of accelerator facilities. This work is the first implementation for a nuclear facility. The main parts of the operator interface are the plant control panel and plant protection panel. The development involved implementation of process variable database, sequence logic, and graphical user interface (GUI) for the PCS and PPS utilizing EPICS and related software tools, e.g. sequencer for sequence logic, and control system studio (CSS-BOY) for graphical use interface. For functional verification of the PCS and PPS, a plant model is interfaced, which is a physics-based model of the facility coolant loops implemented as a numerical computer code. The training simulator is tested and demonstrated its effectiveness in various plant operation sequences, e.g. start-up, shut-down, maintenance, and refueling. It was also tested for verification of the plant protection system under various trip conditions.

  18. JBluIce–EPICS control system for macromolecular crystallography

    PubMed Central

    Stepanov, Sergey; Makarov, Oleg; Hilgart, Mark; Pothineni, Sudhir Babu; Urakhchin, Alex; Devarapalli, Satish; Yoder, Derek; Becker, Michael; Ogata, Craig; Sanishvili, Ruslan; Venugopalan, Nagarajan; Smith, Janet L.; Fischetti, Robert F.

    2011-01-01

    The trio of macromolecular crystallography beamlines constructed by the General Medicine and Cancer Institutes Collaborative Access Team (GM/CA-CAT) in Sector 23 of the Advanced Photon Source (APS) have been in growing demand owing to their outstanding beam quality and capacity to measure data from crystals of only a few micrometres in size. To take full advantage of the state-of-the-art mechanical and optical design of these beamlines, a significant effort has been devoted to designing fast, convenient, intuitive and robust beamline controls that could easily accommodate new beamline developments. The GM/CA-CAT beamline controls are based on the power of EPICS for distributed hardware control, the rich Java graphical user interface of Eclipse RCP and the task-oriented philosophy as well as the look and feel of the successful SSRL BluIce graphical user interface for crystallography. These beamline controls feature a minimum number of software layers, the wide use of plug-ins that can be written in any language and unified motion controls that allow on-the-fly scanning and optimization of any beamline com­ponent. This paper describes the ways in which BluIce was combined with EPICS and converted into the Java-based JBluIce, discusses the solutions aimed at streamlining and speeding up operations and gives an overview of the tools that are provided by this new open-source control system for facilitating crystallo­graphic experiments, especially in the field of microcrystallo­graphy. PMID:21358048

  19. Lessons learned enhancing EPICS CA for LANSCE timed and flavored data

    SciTech Connect

    Hill, Jeffrey O

    2009-01-01

    A previous paper described an upgrade to EPICS enabling client side tools at LANSCE to receive subscription updates filtered selectively to match a logical configuration of LANSCE beam gates, as configured by the control room. The upgrade required fundamental changes in the EPICS core components. First, the event queue in the EPICS server was upgraded to buffer record (function block) and device specific parameters accessed generically via software interfaces for introspection of 3rd party data. In contrast, event queues in previous versions of EPICS were strictly limited to buffering only value, timestamp, and alarm status tuples. Second, the Channel Access server is being upgraded to filter subscription updates. In this follow on paper some necessary design changes mid-project and the lessons learned during the software development will be described.

  20. Nitrous Oxide Emissions from Biofuel Crops and Parameterization in the EPIC Biogeochemical Model

    EPA Science Inventory

    This presentation describes year 1 field measurements of N2O fluxes and crop yields which are used to parameterize the EPIC biogeochemical model for the corresponding field site. Initial model simulations are also presented.

  1. Future climate change projections of the Okinawa baiu and large-scale feature using a 60-km-mesh global climate model

    NASA Astrophysics Data System (ADS)

    Okada, Y.; Takemi, T.; Ishikawa, H.

    2013-12-01

    Between May and July, East Asia experiences a rainy season that is known as the mei-yu in China and as the baiu in Japan. The precipitation of the baiu is indispensable to our life, but a heavy rain is often generated in this period and gives serious damage. As a starting point for further investigation, we focus on a rainy season around Okinawa region. Okinawa is located southwest of mainland Japan on the eastern fringe of the East China Sea, and consists numerous small islands. 'Baiu' in Okinawa (hereafter, Okinawa baiu) takes places earlier than that in mainland of Japan. It is different in the viewpoints of stationary of baiu front and atmospheric moisture flux from that in other regions of Japan. Okada and Yamazaki (2012) examined on the basis of the proposal of Sampe and Xie (2010), and showed the precipitation in May is explained by a strong north-south temperature gradient at 500 hPa and southerly winds in the vicinity of Okinawa. We investigate the future changes in precipitation and the feature large-scale meteorological fields around Okinawa region, with particular focus on the horizontal temperature advection at 500 hPa, using the present-day (1979-2003) and future (2075-2099) climate simulations data by the 60 km mesh Meteorological Research Institute atmospheric general circulation model (MRI-AGCM3.2H). Future changes in the precipitation of the Okinawa baiu increases slightly during May and June. However, when considered separately in May and June, it shows the precipitation in May increase, and is little change in June. In present-day climate, the May precipitation is associated with warm advection at 500 hPa, mainly due to the meridional temperature gradient and the prevailing southerly wind. This warm advection coincides with upward motion near Okinawa. Precipitation over Okinawa is reduced during late May when the baiu front shifts southeastward. A region of cold advection from the north shifts southward to cover the northern part of Okinawa

  2. Extending and Applying the EPIC Architecture for Human Cognition and Performance

    DTIC Science & Technology

    2011-01-01

    objects and movements, such as typical radar workstation tasks, are incorrectly represented in the architecture. These considerations led to a...Validation. EPIC vs GLEAN models for the AAW task Major progress was made in modeling the MMWS AAW task in EPIC, and using the model to begin...the MMWS task started with the acuity functions developed in the modeling of the Marshall-St. John visual search task (see Kieras & Marshall, 2006) as

  3. Dietary lipids and geriatric depression scale score among elders: the EPIC-Greece cohort.

    PubMed

    Kyrozis, A; Psaltopoulou, T; Stathopoulos, P; Trichopoulos, D; Vassilopoulos, D; Trichopoulou, A

    2009-05-01

    In a prospective epidemiological investigation aiming to identify dietary lipids potentially associated with affective state and depression, 610 healthy men and women aged 60 years or older, participating in the EPIC-Greece cohort and residing in the Attika region had dietary, sociodemographic, anthropometric, medical and lifestyle variables ascertained at enrollment. Six to 13 years later, affective state was evaluated through the 15-point geriatric depression scale (GDS) score along with cognitive function and medical variables. In multivariate linear regression analysis, while adjusting for potential confounders, GDS score was negatively associated with dietary intake of monounsaturated lipids (MUFA) and their main source, olive oil, and positively associated with intake of polyunsaturated lipids (PUFA) and one of their principal sources, seed oils. Intake of calories, total lipids, fish and seafood or saturated lipids did not exhibit significant association with GDS. Potential non-linearities were assessed by quantile multivariate regression analysis: The median GDS score was positively associated with PUFA and seed oils intake, while other lipid groups showed no appreciable associations. The 90th percentile of the GDS score (towards the high end) exhibited significant negative associations with MUFA and olive oil, weaker positive associations with PUFA and seed oils and no appreciable association with other lipid group dietary intakes. We conclude that among Attika elders, lower intake of seed oils and higher intake of olive oil prospectively predict a healthier affective state. Olive oil intake, in particular, predicts a lower chance of scoring in the highest part of the GDS.

  4. An autonomous observation and control system based on EPICS and RTS2 for Antarctic telescopes

    NASA Astrophysics Data System (ADS)

    Zhang, Guang-yu; Wang, Jian; Tang, Peng-yi; Jia, Ming-hao; Chen, Jie; Dong, Shu-cheng; Jiang, Fengxin; Wu, Wen-qing; Liu, Jia-jing; Zhang, Hong-fei

    2016-01-01

    For unattended telescopes in Antarctic, the remote operation, autonomous observation and control are essential. An EPICS-(Experimental Physics and Industrial Control System) and RTS2-(Remote Telescope System, 2nd Version) based autonomous observation and control system with remoted operation is introduced in this paper. EPICS is a set of open source software tools, libraries and applications developed collaboratively and used worldwide to create distributed soft real-time control systems for scientific instruments while RTS2 is an open source environment for control of a fully autonomous observatory. Using the advantage of EPICS and RTS2, respectively, a combined integrated software framework for autonomous observation and control is established that use RTS2 to fulfil the function of astronomical observation and use EPICS to fulfil the device control of telescope. A command and status interface for EPICS and RTS2 is designed to make the EPICS IOC (Input/Output Controller) components integrate to RTS2 directly. For the specification and requirement of control system of telescope in Antarctic, core components named Executor and Auto-focus for autonomous observation is designed and implemented with remote operation user interface based on browser-server mode. The whole system including the telescope is tested in Lijiang Observatory in Yunnan Province for practical observation to complete the autonomous observation and control, including telescope control, camera control, dome control, weather information acquisition with the local and remote operation.

  5. EPIC Radiance Simulator for Deep Space Climate ObserVatoRy (DSCOVR)

    NASA Technical Reports Server (NTRS)

    Lyapustin, Alexei; Marshak, Alexander; Wang, Yujie; Korkin, Sergey; Herman, Jay

    2011-01-01

    The Deep Space Climate ObserVatoRy (DSCOVR) is a planned space weather mission for the Sun and Earth observations from the Lagrangian L1 point. Onboard of DSCOVR is a multispectral imager EPIC designed for unique observations of the full illuminated disk of the Earth with high temporal and 10 km spatial resolution. Depending on latitude, EPIC will observe the same Earth surface area during the course of the day in a wide range of solar and view zenith angles in the backscattering view geometry with the scattering angle of 164-172 . To understand the information content of EPIC data for analysis of the Earth clouds, aerosols and surface properties, an EPIC radiance Simulator was developed covering the UV -VIS-NIR range including the oxygen A and B-bands (A=340, 388, 443, 555, 680, 779.5, 687.7, 763.3 nm). The Simulator uses ancillary data (surface pressure/height, NCEP wind speed) as well as MODIS-based geophysical fields such as spectral surface bidirectional reflectance, column water vapor, and properties of aerosols and clouds including optical depth, effective radius, phase and cloud top height. The original simulations are conducted at 1 km resolution using the look-up table approach and then are averaged to 10 km EPIC radiances. This talk will give an overview of the EPIC Simulator with analysis of results over the continental USA and northern Atlantic.

  6. Medical school hotline: A History of the University of Hawai'i Postgraduate Medical Education Program at Okinawa Chubu Hospital, 1966-2012.

    PubMed

    Maeshiro, Masao; Izutsu, Satoru; Connolly, Kathleen Kihmm

    2014-06-01

    The University of Hawai'i (UH) has been collaborating with Okinawa Prefectural Chubu Hospital for over 46 years. This collaboration started as a post-World War II effort to increase the physician workforce. At the initiation of the US Army and State Department, the University of Hawai'i was recruited, in cooperation with the government of the Ryukyus and USCAR, to initiate a US style postgraduate clinical training program. The Postgraduate Medical Training Program of University of Hawai'i at Okinawa Chubu Hospital introduced a style of training similar to that in the US by offering a rotating internship. The initial contract had UH establish and run the Postgraduate Medical Training Program of University of Hawaii at Okinawa Central Hospital. After Okinawa's reversion to Japan, under a new contract, UH physicians participated as consultants by providing lectures at "grand rounds" and guidance to faculty, staff, and students. To date, 895 physicians have completed the University of Hawai'i Postgraduate Medical Training Program with 74 currently training. Approximately 662 (74%) of the trainees have remained in Okinawa Prefecture to practice medicine. As a result, the program has enhanced the physician workforce for the islands of Okinawa and neighbor archipelagos of Miyako and Yaeyama Islands.

  7. Effects of causeway construction on environment and biota of subtropical tidal flats in Okinawa, Japan.

    PubMed

    Reimer, James Davis; Yang, Sung-Yin; White, Kristine N; Asami, Ryuji; Fujita, Kazuhiko; Hongo, Chuki; Ito, Shingo; Kawamura, Iori; Maeda, Isshu; Mizuyama, Masaru; Obuchi, Masami; Sakamaki, Takashi; Tachihara, Katsunori; Tamura, Maiko; Tanahara, Akira; Yamaguchi, Aika; Jenke-Kodama, Holger

    2015-05-15

    Okinawa, Japan is known for its high marine biodiversity, yet little work has been performed on examining impacts of numerous large-scale coastal development projects on its marine ecosystems. Here, we examine apparent impacts of the construction of the Kaichu-Doro causeway, which was built over 40 years ago. The causeway is a 4.75 km long embankment that divides a large tidal flat and has only two points of water exchange along its entire length. We employed quadrats, transects, sampling, visual surveys, and microbial community analyses combined with environmental, water quality data, and 1m cores, at five stations of two paired sites each (one on each side of Kaichu-Doro) to investigate how the environment and biota have changed since the Kaichu-Doro was built. Results indicate reduction in water flow, and site S1 was particularly heavily impacted by poor water quality, with low diversity and disturbed biotic communities.

  8. The new SCOS-based EGSE of the EPIC flight-spare on-ground cameras

    NASA Astrophysics Data System (ADS)

    La Palombara, Nicola; Abbey, Anthony; Insinga, Fernando; Calderon-Riano, Pedro; Casale, Mauro; Kirsch, Marcus; Martin, James; Munoz, Ramon; Palazzo, Maddalena; Poletti, Mauro; Sembay, Steve; Vallejo, Juan C.; Villa, Gabriele

    2014-07-01

    The XMM-Newton observatory, launched by the European Space Agency in 1999, is still one of the scientific community's most important high-energy astrophysics missions. After almost 15 years in orbit its instruments continue to operate smoothly with a performance close to the immediate post-launch status. The competition for the observing time remains very high with ESA reporting a very healthy over-subscription factor. Due to the efficient use of spacecraft consumables XMM-Newton could potentially be operated into the next decade. However, since the mission was originally planned for 10 years, progressive ageing and/or failures of the on-board instrumentation can be expected. Dealing with them could require substantial changes of the on-board operating software, and of the command and telemetry database, which could potentially have unforeseen consequences for the on-board equipment. In order to avoid this risk, it is essential to test these changes on ground, before their upload. To this aim, two flight-spare cameras of the EPIC experiment (one MOS and one PN) are available on-ground. Originally they were operated through an Electrical Ground Support Equipment (EGSE) system which was developed over 15 years ago to support the test campaigns up to the launch. The EGSE used a specialized command language running on now obsolete workstations. ESA and the EPIC Consortium, therefore, decided to replace it with new equipment in order to fully reproduce on-ground the on-board configuration and to operate the cameras with SCOS2000, the same Mission Control System used by ESA to control the spacecraft. This was a demanding task, since it required both the recovery of the detailed knowledge of the original EGSE and the adjustment of SCOS for this special use. Recently this work has been completed by replacing the EGSE of one of the two cameras, which is now ready to be used by ESA. Here we describe the scope and purpose of this activity, the problems faced during its

  9. Rifting Process and Geomorphic Development of the Okinawa Tough, Southwest Japan

    NASA Astrophysics Data System (ADS)

    Sato, T.; Arai, K.; Inoue, T.; Matsumoto, D.

    2012-12-01

    The Ryukyu Island Arc extends from Kyushu to Taiwan, a distance of 1,200 km, along the Ryukyu Trench where the Philippine Sea Plate is subducting beneath the Eurasian Plate. The Okinawa Trough, a back arc basin has formed behind the Ryukyu Island Arc in late Pliocene to early Pleistocene. The research cruises of GH11 (from 14 July to 15 August, 2011) and GH12 (from 20 to 30 July, 2012) were carried out around the Okinawa Trough. More than 3,600 miles multi channel high-resolution seismic profiles were acquired during these cruises by the GI-gun (Generator 250 cu inch and Injector 105 cu. inch) systems with 16ch digital streamer cable. As a result, two unconformities and three depositional sequence divided by the unconformities are recognized in the trough. The lower and the midlle sequence are tilted and blocked by many normal faults, on the other hand the upper one is not tilted and shows the pattern of onlap fill. From this result, the upper sequence started to deposit after start of the rifting. Additionally, internal reflection of the upper sequence shows the cyclic activities of the rifting. The position of the rifting axis was revealed based on dip of the normal faults. As a result, rifting axis shows echelon arrangement and the displacement of the faults are varied with the segment of the arrangement. The location of the segment boundaries is correlated with geometrical boundary of the adjacent slope. Steep slope with incised valley is distributed in southwestern part where the displacement of the normal fault is large, on the other hand, gentle slope without incised valley is distributed in northeastern part where the displacement is small. This difference of the displacement strongly controls the geometry of the adjacent slope.

  10. Deepwater redox changes in the southern Okinawa Trough since the last glacial maximum

    NASA Astrophysics Data System (ADS)

    Dou, Yanguang; Yang, Shouye; Li, Chao; Shi, Xuefa; Liu, Jihua; Bi, Lei

    2015-06-01

    In this study, rare earth element (REE) was treated as a paleo-redox proxy to investigate the changes of depositional environment in the southern Okinawa Trough since the last glacial maximum. The acid-leachable fraction (leachate) of the sediments recovered from the ODP Site 1202B is dominated by biogenic and authigenic components while detrital contamination is minor. The significant enrichment of middle REE suggests a large contribution from authigenic Mn oxyhydroxides and cerium (Ce) anomaly can indicate deepwater redox change. The REE parameters including Ce anomaly in the leachate exhibit remarkable and abrupt changes in the early Holocene (∼9.5 ka) and during LGM (∼20 ka). An increase of Ce anomaly at 28-22 ka implies the suboxic deepwater condition probably caused by increased primary productivity. Weak positive Ce anomalies during the last glacial maximum and deglaciation suggest an oxic depositional environment responding to the enhanced deepwater ventilation with the advection of the North Pacific Intermediate Water and/or South China Sea Intermediate Water into the trough. A decrease of Ce anomaly in the early Holocene might be caused by the intrusion and strengthening of the Kuroshio Current in the trough that enhanced the water stratification and induced a gradual development of suboxic depositional condition. Furthermore, an abrupt change of chemical composition at ca. 4 ka probably indicates a decrease of dissolved oxygen in deepwater and a weakening of ventilation in the Okinawa Trough. This study suggests that REE proxy can provide new insights into the linkage among surface current, deepwater circulation and sediment record in the continental margin where terrigenous input dominates.

  11. Dissemination of panton-valentine leukocidin-positive methicillin-resistant Staphylococcus aureus in Okinawa, Japan.

    PubMed

    Mine, Yoshiko; Nakasone, Isamu; Yamamoto, Yuichi; Utani, Atsushi; Yamane, Nobuhisa; Uezato, Hiroshi; Takahashi, Kenzo

    2013-01-01

    Panton-Valentine leukocidin (PVL) is a pore-forming cytotoxin that is produced by Staphylococcus aureus closely associated with skin and soft-tissue infections (SSTI). PVL-positive S. aureus strains have been identified worldwide, including in the USA; however, few studies have reported the presence of these strains in Japan. In this study, we prospectively investigated the prevalence of PVL in S. aureus strains from outpatients presenting with SSTI in Okinawa and characterized the PVL-positive S. aureus strains by polymerase chain reaction (PCR) and multilocus sequence typing (MLST). From 2008-2010, 499 clinical samples were obtained from 497 people. S. aureus was identified in 274 samples, and 36% (99 of 274) were methicillin-resistant S. aureus (MRSA). Seventeen (6.2%) PVL-positive S. aureus strains were detected by PCR, and 12 of the 17 PVL-positive strains were MRSA. Most PVL-positive S. aureus caused furuncles or carbuncles. Nine of the 17 PVL-positive isolates had an ST8 MRSA genotype and most harbored SCCmec type IVa and the arcA gene of the arginine catabolic mobile element, which is identical to the USA300 clone prevalent in the USA. PVL-positive S. aureus strains were more likely to be resistant to erythromycin (65%) and levofloxacin (53%). PVL-positive S. aureus strains have emerged and are spreading as a causative pathogen for SSTI in Okinawa.

  12. Spectroscopic characteristics and organic carbon contents in the aerosols collected in Okinawa, Japan

    NASA Astrophysics Data System (ADS)

    Potter, H. J.; Kasaba, T.

    2015-12-01

    Organics in the atmospheric aerosols occupy 20 to 70% of the total mass. Since the proportion of organics is so large that it's important to understand their detailed characteristics. Polymeric compounds called HUmic-Like Substance (HULIS) are known to be present in the atmospheric aerosols. Biomass burning can be a source of HULIS. In this study, atmospheric aerosols were collected at Cape Hedo, a northern tip of Okinawa Island, and we characterized overall features of the organics collected in different seasons. In Okinawa, continental air mass prevails in spring, fall and winter, while maritime air mass from Pacific Ocean prevails in summer. Thus, it is relatively straightforward to identify sources of organics in different seasons. We measured total organic carbon (TOC) and water soluble organic carbon (WSOC) concentrations, and absorbance and fluorescence intensity for the aerosol samples collected during Nov 2012 and July 2014 (n=90). As a result, TOC and WSOC showed almost the same trend, higher concentrations when continental air mass prevailed in fall and winter, while lower concentrations in summer. Percentages of WSOC in TOC accounted for 33-44%. Absorption efficiency, absorbance per 1 ppm organic carbon concentration, of the samples showed higher values in winter and fall, and lower values in summer. Fluorescence efficiency, normalized fluorescence with quinine sulfate per 1 ppm organic carbon concentration, were also different, it is likely that different types of organics were present in the aerosols from different seasons. We are also planning to measure HULIS in the aerosols and will be discussed a link between their contribution and trans-boundary air pollution in Asia.

  13. Origin of the southern Okinawa Trough volcanism from detailed seismic tomography

    NASA Astrophysics Data System (ADS)

    Lin, Jing-Yi; Sibuet, J.-C.; Lee, Chao-Shing; Hsu, Shu-Kun; Klingelhoefer, Frauke

    2007-08-01

    Magmatism associated with subducting plate edges or slab tears has been suggested in the southern Okinawa Trough. The cross back-arc volcanic trail, which consists of a cluster of about 70 seamounts, is located above a Ryukyu slab tear lying along the 123.3°E meridian. In November 2003, more than 3300 earthquakes recorded in this area by 15 ocean bottom seismometers and surrounding land stations during a period of 12 days were used to determine the three-dimensional Vp and Vs velocity structures and Vp/Vs ratios. A mantle inflow characterized by low Vp and Vs and high Vp/Vs passing through the slab tear is imaged. The fluid and/or melt component is rising obliquely from the slab tear in the directions of the cross back-arc volcanic trail, the northern slope of the southern Okinawa Trough and to north of Iriomote Island. The asthenospheric intake is also imaged by an inclined chip-like high Vp/Vs and low Vp and Vs body dipping northerly, which might be linked to the slab retreat. West of the slab tear, most of the earthquakes are located around low Vp and Vs and high Vp/Vs bodies, which suggests that the seismicity is related to magmatic and/or fluid activities. East of it, earthquakes are concentrated in an area characterized by high Vp and Vs velocities and low Vp/Vs, suggesting that the magma chamber is absent beneath the axial part of the trough and that normal faulting is the main factor controlling the seismicity.

  14. The study of active submarine volcanoes and hydrothermal vents in the Southernmost Part of Okinawa Trough

    NASA Astrophysics Data System (ADS)

    Lee, Y.; Tsai, C.; Lee, C.

    2004-12-01

    The study area is located in the Southernmost Part of Okinawa Trough (SPOT), which is a back-arc basin formed by extension of Eurasian plate. Previous research indicated two extensional stages in SPOT area. Many normal-fault structures were come into existence during both extensional processes. The SPOT is presently in an activity tectonic episode. Therefore, the area becomes a frequent earthquake and abundant magmatism. The purpose of this study is to discuss which relationship between tectonics, submarine volcanoes and hydrothermal vents in SPOT area. The investigations are continued from 1998 to 2004, we have found at least twelve active hydrothermal vents in study area. Compare the locations hydrothermal vents with fault systems, we find both of them have highly correlated. We can distinguish them into two shapes, pyramidal shape and non-pyramidal shape. According to plumes height, we are able to divide these vents into two groups near east longitude 122.5° . East of this longitude, the hydrothermal plumes are more powerful and west of it are the weaker. This is closely related to the present extensional axis (N80° E) of the southern part of the Okinawa Trough. This can be explained the reason of why the more powerful vents coming out of the east group. The east group is associated with the present back-arc spreading system. West of 122.5° , the spreading system are in a primary stage. The andesitic volcanic island, the Turtle Island, is a result of N60° E extensional tectonism with a lot of faults. Besides the pyramidal shape, this can be proved indirectly. The vents located in the west side were occurred from previous extensional faults and are weaker than the eastern. Therefore, we suggest that if last the extension keeps going on, the hydrothermal vents located at the west side of the longitude 122.5° will be intensified.

  15. Calcareous nannofossil assemblages of the upper Miocene to Pliocene Shimajiri Group on Okinawa-jima, Ryukyu Islands, southwestern Japan

    NASA Astrophysics Data System (ADS)

    Imai, Ryo; Sato, Tokiyuki; Iryu, Yasufumi

    2017-03-01

    We investigated the calcareous nannofossil biostratigraphy and paleoceanography of the Shimajiri Group in two exploratory wells (depths, 1243 and 1800 m) drilled on southern Okinawa-jima, Ryukyu Islands, southwestern Japan. Three late Miocene to Pliocene datum planes were identified: the first occurrence of Amaurolithus spp. (7.42 Ma), the last occurrence of Discoaster quinqueramus (5.59 Ma), and the first occurrence of Ceratolithus rugosus (5.12 Ma). These datum planes were also identified in two other deep wells on southern Okinawa-jima. Nutrient levels (reconstructed from the relative abundances of small Reticulofenestra spp., and the relative abundances of Discoaster spp. plus Sphenolithus abies) suggest that deposition of the Shimajiri Group (<8.29-3.50 Ma) occurred under conditions of increasing eutrophication. The eutrophication was likely caused by shallowing of the sedimentary basin, but a stepwise shift was associated with an abrupt eutrophication event that occurred in the northwestern Pacific Ocean at 5 Ma.

  16. Electric Propulsion Interactions Code (EPIC): Recent Enhancements and Goals for Future Capabilities

    NASA Technical Reports Server (NTRS)

    Gardner, Barbara M.; Kuharski, Robert A.; Davis, Victoria A.; Ferguson, Dale C.

    2007-01-01

    The Electric Propulsion Interactions Code (EPIC) is the leading interactive computer tool for assessing the effects of electric thruster plumes on spacecraft subsystems. EPIC, developed by SAIC under the sponsorship of the Space Environments and Effects (SEE) Program at the NASA Marshall Space Flight Center, has three primary modules. One is PlumeTool, which calculates plumes of electrostatic thrusters and Hall-effect thrusters by modeling the primary ion beam as well as elastic scattering and charge-exchange of beam ions with thruster-generated neutrals. ObjectToolkit is a 3-D object definition and spacecraft surface modeling tool developed for use with several SEE Program codes. The main EPIC interface integrates the thruster plume into the 3-D geometry of the spacecraft and calculates interactions and effects of the plume with the spacecraft. Effects modeled include erosion of surfaces due to sputtering, re-deposition of sputtered materials, surface heating, torque on the spacecraft, and changes in surface properties due to erosion and deposition. In support of Prometheus I (JIMO), a number of new capabilities and enhancements were made to existing EPIC models. Enhancements to EPIC include adding the ability to scale and view individual plume components, to import a neutral plume associated with a thruster (to model a grid erosion plume, for example), and to calculate the plume from new initial beam conditions. Unfortunately, changes in program direction have left a number of desired enhancements undone. Variable gridding over a surface and resputtering of deposited materials, including multiple bounces and sticking coefficients, would significantly enhance the erosion/deposition model. Other modifications such as improving the heating model and the PlumeTool neutral plume model, enabling time dependent surface interactions, and including EM1 and optical effects would enable EPIC to better serve the aerospace engineer and electric propulsion systems integrator

  17. Investigating the Impact of EPIC Professional Development on Perspectives Charter School Principals. An Evaluation of the EPIC Professional Learning Model. Evaluation Brief

    ERIC Educational Resources Information Center

    Sloan, Kay; Pereira-Leon, Maura; Honeyford, Michelle

    2010-01-01

    In 2009-10, New Leaders for New Schools partnered with the Perspectives Charter School Network in Chicago to pilot an innovative leadership development program for principals. The program is part of the Effective Practice Incentive Community (EPIC) initiative, which was created by New Leaders in 2006 to identify, reward, and share effective…

  18. Dispersal of hydrothermal plumes in the near field of natural CO2 seeps in the Okinawa Trough using primordial helium-3

    NASA Astrophysics Data System (ADS)

    Buss, A.; Walter, M.; Mertens, C.; Sültenfuss, J.; Nakamura, K.; Rehder, G. J.; Rhein, M.

    2011-12-01

    The Okinawa Trough back-arc basin in the west Pacific Ocean is one of the two known hydrothermal active areas where venting of liquid CO2 bubbles has been observed. During the RV Sonne cruise SO-196 in March 2008 two hydrothermal vent sites in the southern Okinawa Trough were investigated: Hatoma Knoll and Yonaguni Knoll IV. Data were collected to characterise the dispersal of the hydrothermal plume and hence the spreading of CO2 in the water column. The data set consists of CTD casts with additional sensors for redox potential and pH as well as velocity measurements with a lowered acoustic Doppler current profiler (LADCP) and water samples to determine helium isotope concentrations. The dispersal of the hydrothermal plumes at the two vent sites was analysed using primordial helium as a conservative tracer for hydrothermal venting and anomalies in the redox potential and pH as an indicator of plume characteristics. The relation between the measured decrease in pH and δ3He showed a good correlation in the density ranges of the plumes at Hatoma Knoll as well as at Yonaguni Knoll IV. The heat fluxes from both vent sites were estimated through the maximum rise height of the plume and the background stratification. The vent site Hatoma Knoll lies in the middle of the caldera of a submarine volcano. One non-buoyant plume with a maximum rise height of 140 m above the seafloor has been identified. The vent site emitted a total heat flux of about 80 MW. The excess of δ3He in the water column agrees well with the maximum rise height of the plume, thus indicating a plume that had risen almost undisturbed. The vent site Yonaguni Knoll IV is located in a valley between a group of seamounts. Two non-buoyant plumes have been identified, with maximum rise heights of 230 m and 270 m above the seafloor. The total heat flux from the vent site was about 540 MW. An excess of δ3He has been found up to 600 m above the seafloor which could be caused by strong vertical mixing, but also

  19. The EPIC-MOS Particle-Induced Background Spectrum

    NASA Technical Reports Server (NTRS)

    Kuntz, K. D.; Snowden, S. L.

    2006-01-01

    We have developed a method for constructing a spectrum of the particle-induced instrumental background of the XMM-Newton EPIC MOS detectors that can be used for observations of the diffuse background and extended sources that fill a significant fraction of the instrument field of view. The strength and spectrum of the particle-induced background, that is, the background due to the interaction of particles with the detector and the detector surroundings, is temporally variable as well as spatially variable over individual chips. Our method uses a combination of the filter-wheel-closed data and a database of unexposed-region data to construct a spectrum of the "quiescent" background. We show that, using this method of background subtraction, the differences between independent observations of the same region of "blank sky" are consistent with the statistical uncertainties except when there is clear evidence of solar wind charge exchange emission. We use the blank sky observations to show that contamination by SWCX emission is a strong function of the solar wind proton flux, and that observations through the flanks of the magnetosheath appear to be contaminated only at much higher solar wind fluxes. We have also developed a spectral model of the residual soft proton flares, which allows their effects to be removed to a substantial degree during spectral fitting.

  20. Anthropometry and the Risk of Lung Cancer in EPIC.

    PubMed

    Dewi, Nikmah Utami; Boshuizen, Hendriek C; Johansson, Mattias; Vineis, Paolo; Kampman, Ellen; Steffen, Annika; Tjønneland, Anne; Halkjær, Jytte; Overvad, Kim; Severi, Gianluca; Fagherazzi, Guy; Boutron-Ruault, Marie-Christine; Kaaks, Rudolf; Li, Kuanrong; Boeing, Heiner; Trichopoulou, Antonia; Bamia, Christina; Klinaki, Eleni; Tumino, Rosario; Palli, Domenico; Mattiello, Amalia; Tagliabue, Giovanna; Peeters, Petra H; Vermeulen, Roel; Weiderpass, Elisabete; Torhild Gram, Inger; Huerta, José María; Agudo, Antonio; Sánchez, María-José; Ardanaz, Eva; Dorronsoro, Miren; Quirós, José Ramón; Sonestedt, Emily; Johansson, Mikael; Grankvist, Kjell; Key, Tim; Khaw, Kay-Tee; Wareham, Nick; Cross, Amanda J; Norat, Teresa; Riboli, Elio; Fanidi, Anouar; Muller, David; Bueno-de-Mesquita, H Bas

    2016-07-15

    The associations of body mass index (BMI) and other anthropometric measurements with lung cancer were examined in 348,108 participants in the European Investigation Into Cancer and Nutrition (EPIC) between 1992 and 2010. The study population included 2,400 case patients with incident lung cancer, and the average length of follow-up was 11 years. Hazard ratios were calculated using Cox proportional hazard models in which we modeled smoking variables with cubic splines. Overall, there was a significant inverse association between BMI (weight (kg)/height (m)(2)) and the risk of lung cancer after adjustment for smoking and other confounders (for BMI of 30.0-34.9 versus 18.5-25.0, hazard ratio = 0.72, 95% confidence interval: 0.62, 0.84). The strength of the association declined with increasing follow-up time. Conversely, after adjustment for BMI, waist circumference and waist-to-height ratio were significantly positively associated with lung cancer risk (for the highest category of waist circumference vs. the lowest, hazard ratio = 1.25, 95% confidence interval: 1.05, 1.50). Given the decline of the inverse association between BMI and lung cancer over time, the association is likely at least partly due to weight loss resulting from preclinical lung cancer that was present at baseline. Residual confounding by smoking could also have influenced our findings.

  1. Exploring fungal diversity in deep-sea sediments from Okinawa Trough using high-throughput Illumina sequencing

    NASA Astrophysics Data System (ADS)

    Zhang, Xiao-Yong; Wang, Guang-Hua; Xu, Xin-Ya; Nong, Xu-Hua; Wang, Jie; Amin, Muhammad; Qi, Shu-Hua

    2016-10-01

    The present study investigated the fungal diversity in four different deep-sea sediments from Okinawa Trough using high-throughput Illumina sequencing of the nuclear ribosomal internal transcribed spacer-1 (ITS1). A total of 40,297 fungal ITS1 sequences clustered into 420 operational taxonomic units (OTUs) with 97% sequence similarity and 170 taxa were recovered from these sediments. Most ITS1 sequences (78%) belonged to the phylum Ascomycota, followed by Basidiomycota (17.3%), Zygomycota (1.5%) and Chytridiomycota (0.8%), and a small proportion (2.4%) belonged to unassigned fungal phyla. Compared with previous studies on fungal diversity of sediments from deep-sea environments by culture-dependent approach and clone library analysis, the present result suggested that Illumina sequencing had been dramatically accelerating the discovery of fungal community of deep-sea sediments. Furthermore, our results revealed that Sordariomycetes was the most diverse and abundant fungal class in this study, challenging the traditional view that the diversity of Sordariomycetes phylotypes was low in the deep-sea environments. In addition, more than 12 taxa accounted for 21.5% sequences were found to be rarely reported as deep-sea fungi, suggesting the deep-sea sediments from Okinawa Trough harbored a plethora of different fungal communities compared with other deep-sea environments. To our knowledge, this study is the first exploration of the fungal diversity in deep-sea sediments from Okinawa Trough using high-throughput Illumina sequencing.

  2. Spatial and temporal variations of chemicals in the TSP aerosols simultaneously collected at three islands in Okinawa, Japan

    NASA Astrophysics Data System (ADS)

    Arakaki, Takemitsu; Azechi, Sotaro; Somada, Yuka; Ijyu, Moriaki; Nakaema, Fumiya; Hitomi, Yuya; Handa, Daishi; Oshiro, Yoshito; Miyagi, Youichi; Tsuhako, Ai; Murayama, Hitomi; Higaonna, Yumi; Tanahara, Akira; Itoh, Akihide; Fukushima, Soko; Higashi, Kazuaki; Henza, Yui; Nishikawa, Rin; Shinjo, Hibiki; Wang, Hongyan

    2014-11-01

    East Asia's rapid economic growth has led to concerns about the emission of air pollutants. We collected total suspended particle (TSP) aerosol samples simultaneously at three islands in Okinawa, Japan, which are downwind of East Asia, during the Asian dust season, to examine the spatial and temporal variations and chemical transformations of major chemicals in the aerosols. Weekly samples were collected from July 2008 to June 2010, and the concentrations of water-soluble cations, anions, and organic carbon (WSOC) were determined (n = 303). Spatial distribution analysis showed that monthly mean concentrations of non-sea-salt (nss)-SO42- in the spring (Asian dust season) decreased with increasing distance from Asia, while the trend for NO3- was less evident, suggesting that chemical transformation affected the long-range transport of certain chemicals. Temporal variation analysis showed that concentrations of nss-SO42-, NO3-, and WSOC during the spring were about 2.0, 2.4, and 1.8 times those in the summer (cleaner air mass from the Pacific Ocean), respectively. This study demonstrated that air pollutants were transported from the Asian continent to the Okinawa islands and affected the air quality in the region. There may also be impacts on ecosystems, because increased concentrations of particulate NO3- could increase nutrient levels around the Okinawa islands.

  3. Extremely low genetic variability within and among locations of the greenfish holothurian Stichopus chloronotus Brandt, 1835 in Okinawa, Japan.

    PubMed

    Soliman, Taha; Takama, Okuto; Fernandez-Silva, Iria; Reimer, James D

    2016-01-01

    The greenfish sea cucumber Stichopus chloronotus is an economically and ecologically important sea cucumber species throughout its range. This species is widely distributed, inhabiting coral reefs of the Indo-Pacific Ocean. Our study evaluated population genetic structure and levels of genetic diversity in southern Japan. A total of 180 individuals were collected from eight locations from Okinawa and Okinoerabu Islands and sequenced using mitochondrial 16S ribosomal DNA (16S) and nuclear histone H3 (H3) gene. Only three 16S haplotypes were detected (518 bp) with haplotype diversity ranging from 0 to 0.56 and nucleotide diversity from 0 to 0.1%. H3 showed no variation among the studied locations. It is plausible that such results could be due to a shift to asexual reproduction. Additionally, the presence of the species on the east coast of Okinawa could only be detected in one location and all individuals consisted of a single haplotype. Genetic differences between the east and west coasts of Okinawa have been noticed in other coral reef organisms, and attributed to either ecological or biogeographical historical differences between the coasts due to differing levels of isolation during Pleistocene ice ages. Results from the present study should inform management and conservation policies of S. chloronotus in southern Japan.

  4. Extremely low genetic variability within and among locations of the greenfish holothurian Stichopus chloronotus Brandt, 1835 in Okinawa, Japan

    PubMed Central

    Takama, Okuto; Fernandez-Silva, Iria; Reimer, James D.

    2016-01-01

    The greenfish sea cucumber Stichopus chloronotus is an economically and ecologically important sea cucumber species throughout its range. This species is widely distributed, inhabiting coral reefs of the Indo-Pacific Ocean. Our study evaluated population genetic structure and levels of genetic diversity in southern Japan. A total of 180 individuals were collected from eight locations from Okinawa and Okinoerabu Islands and sequenced using mitochondrial 16S ribosomal DNA (16S) and nuclear histone H3 (H3) gene. Only three 16S haplotypes were detected (518 bp) with haplotype diversity ranging from 0 to 0.56 and nucleotide diversity from 0 to 0.1%. H3 showed no variation among the studied locations. It is plausible that such results could be due to a shift to asexual reproduction. Additionally, the presence of the species on the east coast of Okinawa could only be detected in one location and all individuals consisted of a single haplotype. Genetic differences between the east and west coasts of Okinawa have been noticed in other coral reef organisms, and attributed to either ecological or biogeographical historical differences between the coasts due to differing levels of isolation during Pleistocene ice ages. Results from the present study should inform management and conservation policies of S. chloronotus in southern Japan. PMID:27703841

  5. Chemical enrichment in the hot intra-cluster medium seen with XMM-Newton/EPIC

    NASA Astrophysics Data System (ADS)

    Mernier, F.; de Plaa, J.; Pinto, C.; Kaastra, J.; Kosec, P.; Zhang, Y.; Mao, J.; Werner, N.

    2016-06-01

    The intra-cluster medium (ICM), permeating the large gravitational potential well of galaxy clusters and groups, is rich in metals, which can be detected via their emission lines in the soft X-ray band. These heavy elements (typically from O to Ni) have been synthesized by Type Ia (SNIa) and core-collapse (SNcc) supernovae within the galaxy members, and continuously enrich the ICM since the cosmic star formation peak (z ≃ 2-3). Because the predicted chemical yields of supernovae depend on either their explosion mechanisms (SNIa) or the initial mass and metallicity of their progenitors (SNcc), measuring the abundances in the ICM can help to constrain supernovae models. In this study, we use XMM-Newton/EPIC to measure the abundances of 9 elements (Mg, Si, S, Ar, Ca, Cr, Mn, Fe and Ni) in a sample of 44 cool-core galaxy clusters, groups and ellipticals (the CHEERS catalog). Combining these results with the O and Ne abundances measured using RGS, we establish an average X/Fe abundance pattern in the ICM, and we determine the best-fit SNIa and SNcc models, as well as the relative fraction of SNIa/SNcc responsible for the enrichment.

  6. The Calibration of the DSCOVR EPIC Multiple Visible Channel Instrument Using MODIS and VIIRS as a Reference

    NASA Technical Reports Server (NTRS)

    Haney, Conor; Doeling, David; Minnis, Patrick; Bhatt, Rajendra; Scarino, Benjamin; Gopalan, Arun

    2016-01-01

    The Deep Space Climate Observatory (DSCOVR), launched on 11 February 2015, is a satellite positioned near the Lagrange-1 (L1) point, carrying several instruments that monitor space weather, and Earth-view sensors designed for climate studies. The Earth Polychromatic Imaging Camera (EPIC) onboard DSCOVR continuously views the sun-illuminated portion of the Earth with spectral coverage in the UV, VIS, and NIR bands. Although the EPIC instrument does not have any onboard calibration abilities, its constant view of the sunlit Earth disk provides a unique opportunity for simultaneous viewing with several other satellite instruments. This arrangement allows the EPIC sensor to be inter-calibrated using other well-characterized satellite instrument reference standards. Two such instruments with onboard calibration are MODIS, flown on Aqua and Terra, and VIIRS, onboard Suomi-NPP. The MODIS and VIIRS reference calibrations will be transferred to the EPIC instrument using both all-sky ocean and deep convective clouds (DCC) ray-matched EPIC and MODIS/VIIRS radiance pairs. An automated navigation correction routine was developed to more accurately align the EPIC and MODIS/VIIRS granules. The automated navigation correction routine dramatically reduced the uncertainty of the resulting calibration gain based on the EPIC and MODIS/VIIRS radiance pairs. The SCIAMACHY-based spectral band adjustment factors (SBAF) applied to the MODIS/ VIIRS radiances were found to successfully adjust the reference radiances to the spectral response of the specific EPIC channel for over-lapping spectral channels. The SBAF was also found to be effective for the non-overlapping EPIC channel 10. Lastly, both ray-matching techniques found no discernable trends for EPIC channel 7 over the year of publically released EPIC data.

  7. The calibration of the DSCOVR EPIC multiple visible channel instrument using MODIS and VIIRS as a reference

    NASA Astrophysics Data System (ADS)

    Haney, Conor; Doelling, David; Minnis, Patrick; Bhatt, Rajendra; Scarino, Benjamin; Gopalan, Arun

    2016-09-01

    The Deep Space Climate Observatory (DSCOVR), launched on 11 February 2015, is a satellite positioned near the Lagrange-1 (L1) point, carrying several instruments that monitor space weather, and Earth-view sensors designed for climate studies. The Earth Polychromatic Imaging Camera (EPIC) onboard DSCOVR continuously views the sun illuminated portion of the Earth with spectral coverage in the UV, VIS, and NIR bands. Although the EPIC instrument does not have any onboard calibration abilities, its constant view of the sunlit Earth disk provides a unique opportunity for simultaneous viewing with several other satellite instruments. This arrangement allows the EPIC sensor to be intercalibrated using other well-characterized satellite instrument reference standards. Two such instruments with onboard calibration are MODIS, flown on Aqua and Terra, and VIIRS, onboard Suomi-NPP. The MODIS and VIIRS reference calibrations will be transferred to the EPIC instrument using both all-sky ocean and deep convective clouds (DCC) ray-matched EPIC and MODIS/VIIRS radiance pairs. An automated navigation correction routine was developed to more accurately align the EPIC and MODIS/VIIRS granules. The automated navigation correction routine dramatically reduced the uncertainty of the resulting calibration gain based on the EPIC and MODIS/VIIRS radiance pairs. The SCIAMACHY-based spectral band adjustment factors (SBAF) applied to the MODIS/ VIIRS radiances were found to successfully adjust the reference radiances to the spectral response of the specific EPIC channel for over-lapping spectral channels. The SBAF was also found to be effective for the non overlapping EPIC channel 10. Lastly, both ray-matching techniques found no discernable trends for EPIC channel 7 over the year of publically released EPIC data.

  8. Quantitative food intake in the EPIC-Germany cohorts. European Investigation into Cancer and Nutrition.

    PubMed

    Schulze, M B; Brandstetter, B R; Kroke, A; Wahrendorf, J; Boeing, H

    1999-01-01

    The EPIC-Heidelberg and the EPIC-Potsdam studies with about 53,000 study participants represent the German contribution to the EPIC (European Investigation into Cancer and Nutrition) cohort study. Within the EPIC study, standardized 24-hour dietary recalls were applied as a quantitative calibration method in order to estimate the amount of scaling bias introduced by the varying center-specific dietary assessment methods. This article presents intake of food items and food groups in the two German cohorts estimated by 24-hour quantitative dietary recalls. Recalls from 1,013 men and 1,078 women in Heidelberg and 1,032 men and 898 women in Potsdam were included in the analysis. The intake of recorded food items or recipe ingredients as well as fat used for cooking was summarized into 16 main food groups and a variety of different subgroups stratified by sex and weighted for the day of the week and age. In more than 90% of the recalls, consumption of dairy products, cereals and cereal products, bread, fat, and non-alcoholic beverages, particularly coffee/tea, was reported. Inter-cohort evaluations revealed that bread, potatoes, fruit and fat were consumed in higher amounts in the Potsdam cohort while the opposite was found for pasta/rice, non-alcoholic, and alcoholic beverages. It was concluded that the exposure variation was increased by having two instead of one EPIC study centers in Germany.

  9. The 2005 Ilan earthquake doublet and seismic crisis in northeastern Taiwan: evidence for dyke intrusion associated with on-land propagation of the Okinawa Trough

    NASA Astrophysics Data System (ADS)

    Lai, Kuang-Yin; Chen, Yue-Gau; Wu, Yih-Min; Avouac, Jean-Philippe; Kuo, Yu-Ting; Wang, Yu; Chang, Chien-Hsin; Lin, Kuan-Chuan

    2009-11-01

    Northern Taiwan underwent mountain building in the early stage of the Taiwan orogeny but is currently subjected to post-collisional crustal extension. It may be related to gravitational collapse or to the rifting of the Okinawa Trough, which lies offshore northeastern Taiwan. The Ilan Plain, northeastern Taiwan, which is bounded by the normal fault systems and filled up with thick Pliocene-Pleistocene sedimentary sequences, formed under such an extension environment. Over there on 2005 March 5 two earthquakes with about the same magnitude (ML = 5.9) occurred within 68 s and produced intense aftershocks activity according to the records of Central Weather Bureau Seismic Network of Taiwan. We relocated the earthquake sequence by the three-dimension earthquake location algorithm with the newly published 3-D Vp and Vp/Vs velocity model, and determined the first-polarity focal mechanisms of the earthquake doublet. One major cluster of aftershocks which trends E-W and dips steeply to the south can be identified and picked up as a potential fault plane. The focal mechanisms of the two main shocks are both classified as normal type by first-polarity but strike-slip by centroid moment tensor inversion; however two methods both yield consistent E-W strike. Static coseismic deformation was additionally determined from Global Positioning System (GPS) daily solutions at a set of continuous GPS stations and from strong-motion seismographs. These data show NW-SE extension at high angle to the fault plane, which cannot be explained from a simple strike-slip double-couple mechanism. On the other hand, the small vertical displacements and steep fault plane cannot be explained from a simple normal event as well. We present from elastic dislocation modelling that the geodetic data are best explained by significant component of tensile source with centimetre-scale of opening on a 15-km-long fault extending from 1 to 13 km depth. We therefore interpret the crisis as the result of dyke

  10. Underground dams for irrigation supplies in coastal limestone aquifer, Okinawa, Japan

    NASA Astrophysics Data System (ADS)

    Yasumoto, J.; Nakano, T.; Nawa, N.

    2011-12-01

    The use of underground dams to store water in regions with arid or tropical climates is a method that has received considerable attention in the last few decades. And now, for the tropical and subtropical islands that are highly vulnerable to climate change underground dams have been attracting attention again as a method of groundwater management. Okinawa Prefecture is Japan's southernmost prefecture, which consists of hundreds of islands in a chain over 1,000 km long, called the Ryukyu Islands which extend southwest from Kyushu to Taiwan. The national irrigation project of the Ryukyu Islands has been carried out, and several underground dams have been constructed. The Komesu and Giiza underground dams are first full scale underground dam facilities constructed for irrigation in Japan. The Komesu underground dam is a salt-water proof type. It prevents salt-water intrusion and provides storage fresh-water for irrigation in coastal limestone aquifer. Giiza underground dam is a dam up type for storage of fresh-water. These groundwater reservoirs are located in the coastal region of southern part of Okinawa (main island), where Ryukyu limestone is extensively distributed. We studied the behaviour of groundwater flow, saltwater intrusion and nitrate nitrogen (NO3-N) in groundwater in this region by using observation data of groundwater and springs through long term (from 1993 to 2010) monitoring. And, a groundwater flow and salt-water intrusion analysis have been conducted with three dimensional numerical model applied to these dam reservoir areas. The MODFLOW-NWT with SWI code and PEST was used to simulate the complex groundwater flow patterns. Through the comparison with simulation and observed data, it was concluded that the cut off wall of underground dams effectively stores the groundwater and prevents the salt-water intrusion in the reservoir areas. The observed groundwater levels at the reservoir areas were almost reproduced by the numerical model, but there

  11. Microbial Community in a Sediment-Hosted CO2 Lake of the Southern Okinawa Trough Hydrothermal Field

    NASA Astrophysics Data System (ADS)

    Inagaki, F.; Kuypers, M. M.; Tsunogai, U.; Ishibashi, J.; Nakamura, K.; Treude, T.; Ohkubo, S.; Nakaseama, M.; Gena, K.; Chiba, H.; Hirayama, H.; Nunoura, T.; Takai, K.; Jorgensen, B. B.; Horikoshi, K.; Boetius, A.

    2006-12-01

    One-carbon assimilating (micro-)organisms play an important role for global carbon cycling; however, the increasing level of anthropogenic CO2 in the atmosphere has exceeded the capacity of natural biological feedback, hence as greenhouse gasses it is expected to cause climacteric change with negative effects on the earth's ecosystems and human society. To reduce CO2 emissions into the atmosphere, a variety of options have been discussed, including a disposal of CO2 into the deep ocean. However, the impact of CO2 disposal on deep-sea ecosystems as well as of the consequent microbiological feedback remains largely unknown. At the Yonaguni Knoll IV hydrothermal field, southern Okinawa Trough, we observed a natural liquid CO2 lake in sediments overlying elemental sulfur and CO2 hydrates at a water depth of 1380m. The liquid CO2 droplets were composed of 85% CO2 and 14% methane with hydrogen below the detection limit. We found high abundances (>109 cm-3) of microbial cells in sediment pavements above the CO2 lake, decreasing to strikingly low cell numbers (10&^{7} cm-3) at the liquid CO2/CO2-hydrate interface. Molecular ecological study based on the sequences of 16S rRNA genes showed that the key groups in these sediments were: (i) the anaerobic methanotrophic archaea ANME-2c and the Eel-2 group of Deltaproteobacteria, and (ii) sulfur-metabolizing chemolithotrophs within the Gamma- and Epsilonproteobacteria. The detection of functional genes (mcrA, cbbL) related to one- carbon assimilation as well as the presence of highly 13C-depleted archaeal and bacterial lipid biomarkers suggest that microorganisms assimilating CO2 and/or methane dominate the liquid CO2 and CO2-hydrate-bearing sediments. We propose that the Yonaguni Knoll is an exceptional natural laboratory for the study of consequences of CO2 disposal as well as of natural CO2 reservoirs as potential microbial habitats on early Earth and other celestial bodies.

  12. Chemical Analysis of Fractionated Halogens in Atmospheric Aerosols Collected in Okinawa, Japan

    NASA Astrophysics Data System (ADS)

    Tsuhako, A.; Miyagi, Y.; Somada, Y.; Azechi, S.; Handa, D.; Oshiro, Y.; Murayama, H.; Arakaki, T.

    2013-12-01

    Halogens (Cl, Br and I) play important roles in the atmosphere, e.g. ozone depletion by Br during spring in Polar Regions. Sources of halogens in atmospheric aerosols are mainly from ocean. But, for example, when we analyzed Br- with ion chromatography, its concentrations were almost always below the detection limit, which is also much lower than the estimated concentrations from sodium ion concentrations. We hypothesized that portions of halogens are escaped to the atmosphere, similar to chlorine loss, changed their chemical forms to such as BrO3- and IO3-, and/or even formed precipitates. There was few reported data so far about fractionated halogen concentrations in atmospheric aerosols. Thus, purpose of this study was to determine halogen concentrations in different fractions; free ion, water-soluble chemically transformed ions and precipitates using the authentic aerosols. Moreover, we analyzed seasonal variation for each fraction. Atmospheric aerosol samples were collected at Cape Hedo Atmosphere and Aerosol Monitoring Station (CHAAMS) of Okinawa, Japan during January 2010 and August 2013. A high volume air sampler was used for collecting total particulate matters on quartz filters on a weekly basis. Ultrapure water was used to extract water-soluble factions of halogens. The extracted solutions were filtered with the membrane filter and used for chemical analysis with ion chromatography and ICP-MS. Moreover, the total halogens in aerosols were obtained after digesting aerosols with tetramethylammonium hydroxide (TMAH) using the microwave and analysis with ICP-MS. For Cl, water-soluble Cl- accounted for about 70% of the estimates with Na content. No other forms of water-soluble Cl were found. About 30% of Cl was assumed volatilized to the gas-phase. For Br, water-soluble Br accounted for about 43% of the estimates with Na content, and within the 43%, about 10% of Br was not in the form of Br-. About 46% of Br was assumed volatilized to the gas-phase. For I

  13. Hydrographic changes in the northern Okinawa Trough over the last 88 ka

    NASA Astrophysics Data System (ADS)

    Shi, Xuefa; Zou, Jianjun; Wu, Yonghua

    2015-04-01

    The surface hydrographic conditions of the northern Okinawa Trough are influenced strongly by fluctuations of the East Asian Monsoon (EAM) and the Kuroshio. However, the high-resolution records of past surface hydrographic condition remain scarce in the northern Okinawa Trough (OT) on orbital and millennial time scales. In this study, we applied a multiproxy (planktonic foraminiferal species, δ18O, alkenone sea surface temperature (SST) and salinity (SSS)) reconstruction from sediment core CSH1, which is located at the main axis of the Tsushima Warm Current, a branch of the Kuroshio, in the northern OT since the last 88 ka. The relative abundances of the warm-water planktonic foraminiferal species related to the Kuroshio are high during MIS 1 and MIS 5.1, while cold-water species related to East Asian Winter Monsoon (EAWM) and subarctic water mass are high during MIS 2. Alkenone SST measured from core CSH1 ranges between 21 and 25 ℃, with higher values during interglacials (MIS 1, 3.3, 5.1) and interstadials and lower values during glacials and Heinrich (H)/stadial events. The CSH1 SSS appears to be mainly controlled by the local river runoff and the Kuroshio, while the DOT change seems to be closely related to the strength of the Kuroshio and the latitudinal shift of the subarctic frontal zone. Our records suggest that, during MIS 1 and MIS 5.1, while global sea level was high, the Kuroshio was dominant; while during MIS 2, MIS 3 and MIS 4, with a low sea level, stronger EAWM and a more southerly subarctic front played important roles in governing the hydrographic characteristics in the OT. The hydrographic records, such as SST, SSS and DOT, show regional responses corresponding mainly to the global sea level, the Kuroshio, EAWM and subarctic front, factors which are consistently invoked in the interpretations of other regional records from the OT. Acknowledgements. This study was supported by the National Natural Science Foundation of China (Grant No. 41476056

  14. Long-Range Transport of Perchlorate Observed in the Atmospheric Aerosols Collected at Okinawa Island, Japan

    NASA Astrophysics Data System (ADS)

    Handa, D.; Okada, K.; Kuroki, Y.; Nakama, Y.; Nakajima, H.; Arakaki, T.; Tanahara, A.; Oomori, T.; Miyagi, T.; Kadena, H.; Ishizaki, T.; Nakama, F.

    2007-12-01

    The study of perchlorate has become quite active in the U.S. in the last several years. Perchlorate has been recognized as a new environmental pollutant and it attracted much attention quickly in the world. The health concern about perchlorate stems from the fact that it displaces iodide in the thyroid gland, while iodine-containing thyroid hormones are essential for proper neural development from the fetal stage through the first years of life. In this study, we determined the concentrations of perchlorate ion present in the atmospheric aerosols collected in Okinawa Island, Japan. We then examined the relationships between the perchlorate concentrations and the environmental parameters and the climatic conditions peculiar to Okinawa. Bulk aerosol samples were collected on quartz filters by using a high volume air sampler at Cape Hedo Atmosphere and Aerosol Monitoring Station (CHAAMS). Each sampling duration was one week. The quartz filters with aerosols were stirred with Milli-Q pure water for three hours before perchlorate ion was extracted. The extracted perchlorate ion concentrations were determined by ion chromatography (ICS-2000, DIONEX). The mean perchlorate concentration for the samples collected at CHAAMS was 1.83 ng/m3, and the minimum was 0.18 ng/m3. The samples collected during November 21-27, 2005, January 23-30, 2006 and April 24-01, 2006 had highest perchlorate concentrations. For these three samples, we performed back trajectory analysis, and found that the air mass for the three samples arrived from the Asian continent. A relatively strong correlation (r2 = 0.55) was found between perchlorate and nss-sulfate concentrations for the CHAAMS samples. Furthermore, we analyzed perchlorate in the soils and the fertilizers used for sugar cane farming around the CHAAMS area. The Milli-Q extract of the soil and the fertilizers did not contain any detectable levels of perchlorate ions. Therefore, it was suggested that perchlorate found in the atmospheric

  15. Improving adherence to the Epic Beacon ambulatory workflow.

    PubMed

    Chackunkal, Ellen; Dhanapal Vogel, Vishnuprabha; Grycki, Meredith; Kostoff, Diana

    2016-03-16

    Computerized physician order entry has been shown to significantly improve chemotherapy safety by reducing the number of prescribing errors. Epic's Beacon Oncology Information System of computerized physician order entry and electronic medication administration was implemented in Henry Ford Health System's ambulatory oncology infusion centers on 9 November 2013. Since that time, compliance to the infusion workflow had not been assessed. The objective of this study was to optimize the current workflow and improve the compliance to this workflow in the ambulatory oncology setting. This study was a retrospective, quasi-experimental study which analyzed the composite workflow compliance rate of patient encounters from 9 to 23 November 2014. Based on this analysis, an intervention was identified and implemented in February 2015 to improve workflow compliance. The primary endpoint was to compare the composite compliance rate to the Beacon workflow before and after a pharmacy-initiated intervention. The intervention, which was education of infusion center staff, was initiated by ambulatory-based, oncology pharmacists and implemented by a multi-disciplinary team of pharmacists and nurses. The composite compliance rate was then reassessed for patient encounters from 2 to 13 March 2015 in order to analyze the effects of the determined intervention on compliance. The initial analysis in November 2014 revealed a composite compliance rate of 38%, and data analysis after the intervention revealed a statistically significant increase in the composite compliance rate to 83% (p < 0.001). This study supports a pharmacist-initiated educational intervention can improve compliance to an ambulatory, oncology infusion workflow.

  16. Quality assurance of the international computerised 24 h dietary recall method (EPIC-Soft).

    PubMed

    Crispim, Sandra P; Nicolas, Genevieve; Casagrande, Corinne; Knaze, Viktoria; Illner, Anne-Kathrin; Huybrechts, Inge; Slimani, Nadia

    2014-02-01

    The interview-administered 24 h dietary recall (24-HDR) EPIC-Soft® has a series of controls to guarantee the quality of dietary data across countries. These comprise all steps that are part of fieldwork preparation, data collection and data management; however, a complete characterisation of these quality controls is still lacking. The present paper describes in detail the quality controls applied in EPIC-Soft, which are, to a large extent, built on the basis of the EPIC-Soft error model and are present in three phases: (1) before, (2) during and (3) after the 24-HDR interviews. Quality controls for consistency and harmonisation are implemented before the interviews while preparing the seventy databases constituting an EPIC-Soft version (e.g. pre-defined and coded foods and recipes). During the interviews, EPIC-Soft uses a cognitive approach by helping the respondent to recall the dietary intake information in a stepwise manner and includes controls for consistency (e.g. probing questions) as well as for completeness of the collected data (e.g. system calculation for some unknown amounts). After the interviews, a series of controls can be applied by dietitians and data managers to further guarantee data quality. For example, the interview-specific 'note files' that were created to track any problems or missing information during the interviews can be checked to clarify the information initially provided. Overall, the quality controls employed in the EPIC-Soft methodology are not always perceivable, but prove to be of assistance for its overall standardisation and possibly for the accuracy of the collected data.

  17. Insights into life-history traits of Munidopsis spp. (Anomura: Munidopsidae) from hydrothermal vent fields in the Okinawa Trough, in comparison with the existing data

    NASA Astrophysics Data System (ADS)

    Nakamura, Masako; Chen, Chong; Mitarai, Satoshi

    2015-06-01

    Squat lobsters in the genus Munidopsis are commonly found at, and near, hydrothermal vents. However, the reproductive traits of most Munidopsis spp. are unknown. This study examined the reproductive features of two Munidopsis species sampled from hydrothermal vent fields in the southern Okinawa Trough in February 2014. Three ovigerous females were collected: two Munidopsis ryukyuensis at Irabu Knoll (1661-1675 m depth) and one M. longispinosa at Hatoma Knoll (1482 m depth). Carapace sizes and egg volumes were measured and compared with those of other Munidopsis species. The ovigerous M. ryukyuensis specimens had postorbital carapace lengths of 10.3 and 11.8 mm, without the rostrum, and carapace widths of 8.6 and 9.7 mm. Mean egg volumes of M. ryukyuensis and M. longispinosa were ~4 mm3. These results are consistent with early sexual maturity in M. ryukyuensis and lecithotrophic development in both species, as described in other species of the genus. These life-history traits may enable these vent species to maximize their reproductive and dispersive potential.

  18. Geochemical characteristics of hydrothermal sediments from Iheya North Knoll in the Okinawa Trough

    NASA Astrophysics Data System (ADS)

    Hu, Qiannan; Zhang, Xin; Jiang, Fuqing; Wang, Bing; Luan, Zhendong; Chen, Chang'an; Yan, Jun

    2016-08-01

    Thirty sediment subsamples were recovered from the Iheya North hydrothermal field (with an average of 38 m away from the hydrothermal vent) in the middle Okinawa Trough. Samples were obtained by the ROV (Remote Operated Vehicle) Faxian during the virgin cruise of the R/V Kexue in 2014 with the application of push cores. The chemical compositions of the sediments show that the hydrothermal sediments near the hydrothermal vent are mainly composed of SO3, ZnO and Fe2O3. Moreover, the hydrothermal sediments are also highly enriched in Pb, As, Sb, Hg, Se, Ag, Ba, Mo and Cd comparing with previous analysis results. On the other hand, the concentrations of Sr, Hg and Ag in studied sediments are strongly and positively correlated, these elements can be used as an hydrothermal indicator. In addition, a factor analysis of the sediments suggested that the sediments were mainly influenced by hydrothermal origin, and terrestrial and biogenic input are limited in studied area. It is also suggested that different stages of crystallization were involved in the formation of hydrothermal chimney from factor analysis.

  19. Determination of Dicarboxylic Acid Concentrations in Surface Microlayer of Dams in Okinawa, Japan

    NASA Astrophysics Data System (ADS)

    Kotani, Y.; Taira, N.; Kamizato, C.; Arakaki, T.

    2008-12-01

    The surface microlayer (SML) is a thin layer that forms the boundary between atmosphere and water body. The SML includes fatty acid, protein and other organic compounds. It is the site across which the atmosphere-water system interacts. It also has unique chemical, physical and biological properties, which are very different from those of the underlying water. We determined concentrations of dicarboxylic acids (oxalic, malic, malonic, succinic, adipic, phthalic, fumaric, and maleic acids) in the SML, and compared with those of underlying bulk water. Dicarboxylic acids are the major organic compounds found in atmospheric aerosols, which can be derived from the wind-blown SML. The sampling sites we chose were dams in Okinawa, Japan. The SML was sampled by using a glass plate method. Concentrations of dicarboxylic acids were determined by using a GC-FID after derivatization. The results showed that the dicarboxylic acid concentrations were 2- 17 times higher than those of the underlying water. We have also found that the concentrations of some of the dicarboxylic acids were lower in the afternoon than those in the morning at the same sampling site.

  20. Characterization of fatty acid composition in healthy and bleached corals from Okinawa, Japan

    NASA Astrophysics Data System (ADS)

    Bachok, Zainudin; Mfilinge, Prosper; Tsuchiya, Makoto

    2006-11-01

    Under bleaching conditions, corals lose their symbiotic zooxanthellae, and thus, the ability to synthesize fatty acids (FAs) from photosynthetically derived carbon. This study investigated the lipid content and FA composition in healthy and bleached corals from the Odo reef flat in Okinawa, southern Japan, following a bleaching event. It was hypothesized that the FA composition and abundance would change as algae are lost or die, and possibly microbial abundance would increase in corals as a consequence of bleaching. The lipid content and FA composition of three healthy coral species ( Pavona frondifera, Acropora pulchra, and Goniastrea aspera) and of partially bleached and completely bleached colonies of P. frondifera were examined. The FA composition did not differ among healthy corals, but differed significantly among healthy, partially bleached, and completely bleached specimens of P. frondifera. Completely bleached corals contained significantly lower lipid and total FA content, as well as lower relative amounts of polyunsaturated FAs and higher relative amounts of saturated FAs, than healthy and partially bleached corals. Furthermore, there was a significantly higher relative concentration of monounsaturated FAs and odd-numbered branched FAs in completely bleached corals, indicating an increase in bacterial colonization in the bleached corals.

  1. Unique chemistry of the hydrothermal solution in the mid-Okinawa Trough Backarc Basin

    SciTech Connect

    Sakai, H.; Gamo, T.; Kim, E.S.; Shitashima, K.; Yanagisawa, F.; Tsutsumi, M.; Ishibashi, J.; Sano, Y.; Wakita, H. ); Tanaka, T.; Matsumoto, T.; Naganuma, T.; Mitsuzawa, K. )

    1990-11-01

    Submarine hydrothermal fluids from JADE and CLAM sites in the mid-Okinawa Trough Backarc Basin are highly enriched in CO{sub 2}, K, Li, NH{sub 4}, CH{sub 4} and titration alkalinity compared to MOR fluids so far studied, while their H{sub 2}S and {sup 3}He contents are similar. The He and C isotropic ratios as well as these chemical features indicate that the hydrothermal systems are controlled by reaction between seawater and CO{sub 2}-rich intermediate to acid volcanic rocks of island-arc type, with strong influence of organic matter and are consistent with its initial stage of rifting on a continental plate margin. While the endmember JADE fluid is nearly devoid of Mg and SO{sub 4}, the CLAM fluid has definite concentrations of Mg (upper limit 22 {plus minus} 5 mM) and, most interestingly of {sup 34}S-enriched SO{sub 4} (upper limit 10 {plus minus} 2 mM, {delta}{sup 34}S = 27 to 39{per thousand}).

  2. Gametogenesis and fecundity of Acropora tenella (Brook 1892) in a mesophotic coral ecosystem in Okinawa, Japan

    NASA Astrophysics Data System (ADS)

    Prasetia, Rian; Sinniger, Frederic; Harii, Saki

    2016-03-01

    Mesophotic coral ecosystems (below 30-40 m depth) host a large diversity of zooxanthellate coral communities and may play an important role in the ecology and conservation of coral reefs. Investigating the reproductive biology of mesophotic corals is important to understand their life history traits. Despite an increase in research on mesophotic corals in the last decade, their reproductive biology is still poorly understood. Here, gametogenesis and fecundity of the Indo-Pacific mesophotic coral , Acropora tenella, were examined in an upper mesophotic reef (40 m depth) in Okinawa, Japan for the first time. Acropora tenella is a hermaphrodite with a single annual gametogenic cycle, and both oogenesis and spermatogenesis occurring for 11-12 and 5-6 months, respectively. Timing of spawning of this species was similar to other shallow Acropora spp. in the region. However, colonies had longer gametogenic cycles and less synchronous gamete maturation compared to shallow acroporids with spawning extended over consecutive months. Both the polyp fecundity (number of eggs per polyp) and gonad index (defined as the number of eggs per square centimeter) of A. tenella were lower than most acroporids. Our findings contribute to understanding of the life history of corals on mesophotic reefs and suggest that the reproductive biology of upper mesophotic corals is similar to that of shallow-water corals.

  3. Characteristics of hydrocarbons in sediment core samples from the northern Okinawa Trough.

    PubMed

    Huang, Xin; Chen, Shuai; Zeng, Zhigang; Pu, Xiaoqiang; Hou, Qinghua

    2017-02-15

    Sediment core samples from the northern Okinawa Trough (OT) were analyzed to determine abundances and distributions of hydrocarbons by gas chromatography-mass spectrometer (GC-MS). The results show that the n-alkanes in this sediment core conform to a bimodal distribution, and exhibit an odd-to-even predominance of high molecular weights compared to an even-to-odd predominance in low molecular weight n-alkanes with maxima at C16 and C18. The concentrations of bitumen, alkanes and polyaromatic hydrocarbons (PAHs) were higher in samples S10-07 than all others. Three maturity parameters as well as the ratios between parent phenanthrenes (Ps) and methylphenanthrenes (MPs) in samples S10-07 and S10-17 were higher. The distribution and composition of hydrocarbons in sample S10-07 suggest that one, or several, undetected hydrothermal fields may be present in the region of this sediment core. Results also suggest that volcanism may be the main reason for the observed distribution and composition of hydrocarbons in S10-17 sample.

  4. Geographical variation in echolocation call and body size of the Okinawan least horseshoe bat, Rhinolophus pumilus (Mammalia: Rhinolophidae), on Okinawa-jima Island, Ryukyu Archipelago, Japan.

    PubMed

    Yoshino, Hajime; Matsumura, Sumiko; Kinjo, Kazumitsu; Tamura, Hisao; Ota, Hidetoshi; Izawa, Masako

    2006-08-01

    The Okinawan least horseshoe bat, Rhinolophus pumilus, is a cave-dwelling species endemic to the central and southern Ryukyus, Japan. We analyzed variation in the constant frequency (CF) of the echolocation call and in forearm length (FAL) of this species on Okinawa-jima Island on the basis of data for 479 individuals from 11 caves scattered over the island. CF values in samples from six caves, all located in the southwestern half of Okinawa-jima, were significantly higher than those in samples from five caves in the northeastern half of the island. Also, FAL was significantly greater in the latter group than in the former group, although the ranges of variation in this character substantially overlapped between the two groups. These results suggest substantial differentiation between R. pumilus populations on Okinawa-jima. The implications of our findings for the conservation of this endangered bat species are briefly discussed.

  5. Epidemiologic study of influenza infection in Okinawa, Japan, from 2001 to 2007: changing patterns of seasonality and prevalence of amantadine-resistant influenza A virus.

    PubMed

    Suzuki, Yasushi; Taira, Katsuya; Saito, Reiko; Nidaira, Minoru; Okano, Shou; Zaraket, Hassan; Suzuki, Hiroshi

    2009-03-01

    To clarify seasonal influenza patterns and the prevalence of amantadine-resistant influenza A viruses in Okinawa, located at the southern extremity of Japan in a subtropical climate, we conducted a laboratory-based study of influenza virus infections from 2001 to 2007. The annual outbreaks tended to show two peaks in Okinawa, in summer and winter, although the main islands of Japan, located in a temperate climate area, showed only winter influenza activity. Epidemic types and subtypes in Okinawa mostly matched those on the main islands of Japan in winter and those in Taiwan in summer. Rates of amantadine resistance dramatically increased, from 7.3% in the November 2002-to-March 2003 season to 90.0% in summer 2005, and a similarly high rate of resistance continued for the rest of the study period. Phylogenetic analysis of the hemagglutinin gene of A/H3N2 isolates collected from 2002 to 2007 revealed a monophyletic lineage that was divided into four period groups. Each group included amantadine-sensitive and -resistant viruses within independent clusters. In the November 2005-to-March 2006 season, all of the amantadine-resistant viruses were clustered in clade N, with dual (position 193 and 225) amino acid mutations in their HA1 subunits. In 2005, clade N amantadine-resistant viruses existed in Okinawa several months before the circulation of this clade on the main islands of Japan. In conclusion, surveillance in Okinawa to monitor influenza virus circulation is important for elucidating the dynamics of virus transmission in a border area between temperate and subtropical areas, as Okinawa is one of the best sentinel points in Japan.

  6. EPIC- and CHANCE-HSQC: Two 15N Photo-CIDNP-Enhanced Pulse Sequences for the Sensitive Detection of Solvent-Exposed Tryptophan

    PubMed Central

    Sekhar, Ashok; Cavagnero, Silvia

    2009-01-01

    Photochemically induced dynamic nuclear polarization (photo-CIDNP) of nuclei other than 1H offers a tremendous potential for sensitivity enhancement in liquid state NMR under mild, physiologically relevant conditions. Photo-CIDNP enhancements of 15N magnetization are much larger than those typically observed for 1H. However, the low gyromagnetic ratio of 15N prevents a full fruition of the potential signal-to-noise gains attainable via 15N photo-CIDNP. Here, we propose two novel pulse sequences, EPIC- and CHANCE-HSQC, tailored to overcome the above limitation. EPIC-HSQC exploits the strong 1H polarization and its subsequent transfer to non-equilibrium Nz magnetization prior to 15N photo-CIDNP laser irradiation. CHANCE-HSQC synergistically combines 1H and 15N photo-CIDNP. The above pulse sequences, tested on tryptophan (Trp) and the Trp-containing protein apoHmpH, were found to display up to two-fold higher sensitivity than the reference NPE-SE-HSQC pulse train (based on simple 15N photo-CIDNP followed by N-H polarization transfer), and up to a ca. 3-fold increase in sensitivity over the corresponding dark pulse schemes (lacking laser irradiation). The observed effects are consistent with the predictions from a theoretical model of photo-CIDNP and prove the potential of 15N and 1H photo-CIDNP in liquid state heteronuclear correlation NMR. PMID:19643649

  7. Prevalence and clinical features of human papillomavirus in head and neck squamous cell carcinoma in Okinawa, southern Japan.

    PubMed

    Deng, Zeyi; Hasegawa, Masahiro; Matayoshi, Sen; Kiyuna, Asanori; Yamashita, Yukashi; Maeda, Hiroyuki; Suzuki, Mikio

    2011-11-01

    Previous studies from Okinawa, a subtropical island in southern Japan, demonstrated a higher prevalence of human papillomavirus (HPV) in oral carcinoma and a higher incidence of oral and pharyngeal carcinoma than those for mainland Japan. The present study aims to investigate epidemiologic and clinical features of HPV in head and neck squamous cell carcinoma (HNSCC) in Okinawa. A total of 150 DNA samples from 150 Okinawan patients with head and neck squamous cell carcinoma (HNSCC) were screened for HPV sequences by PCR using three consensus primer sets, and HPV types were determined by direct sequencing. The samples were consisted of 46 cases from the hypopharynx, 44 from the oropharynx, 16 from the larynx, 25 from the oral cavity, 10 from the maxillary sinus, and 9 from the nasopharynx. HPV DNA was detected in 45 (30.0%) HNSCCs, and HPV-16 was identified in 86.7% of positive specimens. The highest prevalence of the HPV sequence was found in oropharyngeal carcinomas (50.0%), especially in tonsillar cancer (63.6%). Multivariate analysis showed that oropharyngeal carcinoma (P = 0.002; OR = 5.34; 95% CI = 1.83-15.58), oral cavity carcinoma (P = 0.012; OR = 4.94; 95% CI = 1.43-17.10), and histological poor differentiation (P = 0.011; OR = 4.25; 95% CI = 1.39-13.04) each independently increased the prevalence of HPV infection. The present study reveals that patients with HNSCC, e.g., oropharyngeal and oral cavity carcinomas, in Okinawa have relatively high HPV-16 positive rates and low HPV-18 positive rates comparing with mainland Japan.

  8. Geochemical features of trace and rare earth elements of pumice in middle Okinawa Trough and its indication of magmatic process

    NASA Astrophysics Data System (ADS)

    Zhai, Shikui; Guo, Kun; Zong, Tong; Yu, Zenghui; Wang, Shujie; Cai, Zongwei; Zhang, Xia

    2017-04-01

    Pumice, the most widely distributed volcanic rock in Okinawa Trough, is loose and porous. Since its formation, it has definitely suffered from the denudation of the sea to different degrees. In order to truly reveal the geochemical features of pumice, we choose the method of mineral separation. Firstly, the phenocryst is separated from glass. Then the phenocryst is divided into light and heavy mineral compositions. By ICP-MS (inductively coupled plasma mass spectrometry) analytical technology, the contents of trace and rare earth elements in the whole pumice, the glass and the heavy and light mineral compositions are determined respectively. By researching the elemental geochemical features, the magma dynamic processes are found. It shows that the initial magma for the pumice in Okinawa Trough came from the depleted mantle, from which the N-MORB (normal type of mid-ocean ridge basalt) is formed, homologous with the local basalts. But they are formed in different periods of magma crystal fractionation. Featured with sufficient crystal fractionation for pumice, it is found that the earlier crystallizing minerals are olivine, plagioclase and pyroxene. The pumice magma, formed from the depleted mantle, was mixed with additional subduction-related materials (components), and contaminated with the mass from upper crust when it rose up into the crust. As the Okinawa Trough is a back-arc basin in its early back-arc spreading stage, its magmatism has a series of its own unique characteristics, different from not only the mid-ocean ridge expansion, but also the mature back-arc basin.

  9. PCR survey of 50 introns in animals: cross-amplification of homologous EPIC loci in eight non-bilaterian, protostome and deuterostome phyla.

    PubMed

    Gérard, K; Guilloton, E; Arnaud-Haond, S; Aurelle, D; Bastrop, R; Chevaldonné, P; Derycke, S; Hanel, R; Lapègue, S; Lejeusne, C; Mousset, S; Ramšak, A; Remerie, T; Viard, F; Féral, J-P; Chenuil, A

    2013-12-01

    Exon Primed Intron Crossing (EPIC) markers provide molecular tools that are susceptible to be variable within species while remaining amplifiable by PCR using potentially universal primers. In this study we tested the possibility of obtaining PCR products from 50 EPIC markers on 23 species belonging to seven different phyla (Porifera, Cnidaria, Arthropoda, Nematoda, Mollusca, Annelida, Echinodermata) using 70 new primer pairs. A previous study had identified and tested those loci in a dozen species, including another phylum, Urochordata (Chenuil et al., 2010). Results were contrasted among species. The best results were achieved with the oyster (Mollusca) where 28 loci provided amplicons susceptible to contain an intron according to their size. This was however not the case with the other mollusk Crepidula fornicata, which seems to have undergone a reduction in intron number or intron size. In the Porifera, 13 loci appeared susceptible to contain an intron, a surprisingly high number for this phylum considering its phylogenetic distance with genomic data used to design the primers. For two cnidarian species, numerous loci (24) were obtained. Ecdysozoan phyla (arthropods and nematodes) proved less successful than others as expected considering reports of their rapid rate of genome evolution and the worst results were obtained for several arthropods. Some general patterns among phyla arose, and we discuss how the results of this EPIC survey may give new insights into genome evolution of the study species. This work confirms that this set of EPIC loci provides an easy-to-use toolbox to identify genetic markers potentially useful for population genetics, phylogeography or phylogenetic studies for a large panel of metazoan species. We then argue that obtaining diploid sequence genotypes for these loci became simple and affordable owing to Next-Generation Sequencing development. Species surveyed in this study belong to several genera (Acanthaster, Alvinocaris, Aplysina

  10. Theological presuppositions of the evolutionary epic: From Robert Chambers to E. O. Wilson.

    PubMed

    Megill, Allan

    2016-08-01

    We can trace the "evolutionary epic" (named by E. O. Wilson, 1978) back to earlier writers, beginning with Robert Chambers (1844). Its basic elements are: fixation on seeing human history as rooted in biology; an aspiration toward telling the whole history of humankind (in its essential features); and insistence on the overall coherence of the projected narrative. The claim to coherence depends on assuming either that the universe possesses an "embedded rationality," or that it is guided by divine purpose. This article proposes the term "idealism" to refer to these two assumptions taken together, for in practice they were closely linked. Nietzsche (1881) was perhaps the first thinker to point out the evolutionary epic's dependence on such an idealism, and he also pointed out that the assumptions of embedded rationality and of divine purpose are closely connected. Darwin's theory of descent with modification (1859) was sharply inconsistent with these assumptions: he was not an "idealist" in the sense indicated here, and not a proponent of the evolutionary epic. Proclaiming his "materialism," Wilson (1978) failed to acknowledge that the epic depends on idealist assumptions; other adherents of the genre (M. Dowd, L. Rue) resurrect (knowingly or not) its theological roots.

  11. [Comment on barren lands: An epic search for diamonds in the North American Arctic Klondike

    NASA Astrophysics Data System (ADS)

    Stern, David P.

    In the book review of Barren Lands: An Epic Search for Diamonds in the North American Arctic (Eos, 13 May 2003), one sentence caught my eye:“the man who triggered a mining stampede not seen since the Klondike Gold Rush of 1849.”

  12. Reliability and Validity of the Evidence-Based Practice Confidence (EPIC) Scale

    ERIC Educational Resources Information Center

    Salbach, Nancy M.; Jaglal, Susan B.; Williams, Jack I.

    2013-01-01

    Introduction: The reliability, minimal detectable change (MDC), and construct validity of the evidence-based practice confidence (EPIC) scale were evaluated among physical therapists (PTs) in clinical practice. Methods: A longitudinal mail survey was conducted. Internal consistency and test-retest reliability were estimated using Cronbach's alpha…

  13. Warrior Mothers as Heroines and Other Healing Imagery in the Finnish National Epic of "Kalevala."

    ERIC Educational Resources Information Center

    Hiltunen, Sirkku M. Sky

    2001-01-01

    Examines mother imagery from the Finnish mythological epic "Kalevala," and describes how they offer healing imagery for understanding and acceptance of one's own mother and subsequently one's self. Offers background to the "Kalevala" itself, its language and to warriors, shamans, and sages in general. Examines seven mother…

  14. Estimating plant available water for general crop simulations in ALMANAC/APEX/EPIC/SWAT

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Process-based simulation models ALMANAC/APEX/EPIC/SWAT contain generalized plant growth subroutines to predict biomass and crop yield. Environmental constraints typically restrict plant growth and yield. Water stress is often an important limiting factor; it is calculated as the sum of water use f...

  15. The True Lion King of Africa: The Epic History of Sundiata, King of Old Mali.

    ERIC Educational Resources Information Center

    Paterno, Domenica R.

    David Wisniewski's 1992 picture book version of the African epic of "Sundiata, Lion King of Mali" and the actual historical account of the 13th century Lion King, Sundiata, are both badly served by Disney's "The Lion King." Disney has been praised for using African animals as story characters; for using the African landscape as…

  16. DIGITAL IMAGE ANALYSIS REPORTS: THE CONVERSION OF EPIC'S TRADITIONAL SITE CHARACTERIZATION PRODUCT

    EPA Science Inventory

    Over the past several years EPIC has been exploring the practicality and cost-effectiveness of providing its traditional hard-copy report product in digital form. This conversion has a number of practical uses including- 1) compatibility for use as data layers in a GIS; 2) transp...

  17. Integrating the Epic Model with spatially defined land use, soil, weather and tillage data

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Land-use and soil management (including tillage and crop rotations) affect soil organic carbon (SOC) balance and can be significant for the improvement of soil quality and productivity, and greenhouse gas emissions. The Environmental Policy Integrated Climate (EPIC) model was used to study the long ...

  18. Modeling Soil Organic Carbon in a Semiarid Region of Kazakhstan Using EPIC

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Inappropriate land use and soil mismanagement produced wide-scale soil and environmental degradation to the short-grass steppe ecosystem in the semiarid region of Kazakhstan. We used the Environmental Policy Integrated Climate (EPIC) model to study long-term impacts of land use changes and soil mana...

  19. Implementation of EPICS based vacuum control system for variable energy cyclotron centre, Kolkata

    SciTech Connect

    Roy, Anindya Bhole, R. B.; Nandy, Partha P.; Yadav, R. C.; Pal, Sarbajit; Roy, Amitava

    2015-03-15

    The vacuum system of the Room Temperature (K = 130) Cyclotron of Variable Energy Cyclotron Centre is comprised of vacuum systems of main machine and Beam Transport System. The vacuum control system is upgraded to a PLC based Automated system from the initial relay based Manual system. The supervisory control of the vacuum system is implemented in Experimental Physics and Industrial Control System (EPICS). An EPICS embedded ARM based vacuum gauge controller is developed to mitigate the requirement of vendor specific gauge controller for gauges and also for seamless integration of the gauge controllers with the control system. A set of MS-Windows ActiveX components with embedded EPICS Channel Access interface are developed to build operator interfaces with less complex programming and to incorporate typical Windows feature, e.g., user authentication, file handling, better fonts, colors, mouse actions etc. into the operator interfaces. The control parameters, monitoring parameters, and system interlocks of the system are archived in MySQL based EPICS MySQL Archiver developed indigenously. In this paper, we describe the architecture, the implementation details, and the performance of the system.

  20. Implementation of EPICS based vacuum control system for variable energy cyclotron centre, Kolkata

    NASA Astrophysics Data System (ADS)

    Roy, Anindya; Bhole, R. B.; Nandy, Partha P.; Yadav, R. C.; Pal, Sarbajit; Roy, Amitava

    2015-03-01

    The vacuum system of the Room Temperature (K = 130) Cyclotron of Variable Energy Cyclotron Centre is comprised of vacuum systems of main machine and Beam Transport System. The vacuum control system is upgraded to a PLC based Automated system from the initial relay based Manual system. The supervisory control of the vacuum system is implemented in Experimental Physics and Industrial Control System (EPICS). An EPICS embedded ARM based vacuum gauge controller is developed to mitigate the requirement of vendor specific gauge controller for gauges and also for seamless integration of the gauge controllers with the control system. A set of MS-Windows ActiveX components with embedded EPICS Channel Access interface are developed to build operator interfaces with less complex programming and to incorporate typical Windows feature, e.g., user authentication, file handling, better fonts, colors, mouse actions etc. into the operator interfaces. The control parameters, monitoring parameters, and system interlocks of the system are archived in MySQL based EPICS MySQL Archiver developed indigenously. In this paper, we describe the architecture, the implementation details, and the performance of the system.

  1. On the prevalence of Asiatic cholera in Okinawa, 1879 and "Ryukyu-kiko" Written by Hironobu Tsuchiya.

    PubMed

    Fukase, Y

    1999-09-01

    The greatest prevalence of Asiatic cholera since the adoption of modern statistics was in 1879. Especially in Okinawa Prefecture, its morbidity rate was the largest in Japan in that year. Dr. Hironobu Tsuchiya, who was appointed as an official of the Department of Inner Affairs, wrote "Ryukyu-kiko" as a private memorandum. He wrote more about the situation of administrative confusion than he did about the condition of Asiatic cholera. This paper also mentions the brief sketch of Tsuchiya's life and the description of the manufacturing methods, effectiveness and use of chemical drugs which are contained in his "Sinyaku-shoko".

  2. A calibration procedure to improve global rice yield simulations with EPIC

    SciTech Connect

    Xiong, Wei; Balkovic, Juraj; van der Velde, M.; Zhang, Xuesong; Izaurralde, Roberto C.; Skalsky, Rastislav; Lin, Erda; Mueller, Nathan; Obersteiner, Michael

    2014-02-01

    Crop models are increasingly used to assess impacts of climate change/variability and management practices on productivity and environmental performance of alternative cropping systems. Calibration is an important procedure to improve reliability of model simulations, especially for large area applications. However, global-scale crop model calibration has rarely been exercised due to limited data availability and expensive computing cost. Here we present a simple approach to calibrate Environmental Policy Integrated Climate (EPIC) model for a global implementation of rice. We identify four parameters (potential heat unit – PHU, planting density – PD, harvest index – HI, and biomass energy ratio – BER) and calibrate them regionally to capture the spatial pattern of reported rice yield in 2000. Model performance is assessed by comparing simulated outputs with independent FAO national data. The comparison demonstrates that the global calibration scheme performs satisfactorily in reproducing the spatial pattern of rice yield, particularly in main rice production areas. Spatial agreement increases substantially when more parameters are selected and calibrated, but with varying efficiencies. Among the parameters, PHU and HI exhibit the highest efficiencies in increasing the spatial agreement. Simulations with different calibration strategies generate a pronounced discrepancy of 5–35% in mean yields across latitude bands, and a small to moderate difference in estimated yield variability and yield changing trend for the period of 1981–2000. Present calibration has little effects in improving simulated yield variability and trends at both regional and global levels, suggesting further works are needed to reproduce temporal variability of reported yields. This study highlights the importance of crop models’ calibration, and presents the possibility of a transparent and consistent up scaling approach for global crop simulations given current availability of

  3. Biomarkers of folate and vitamin B12 and breast cancer risk: report from the EPIC cohort.

    PubMed

    Matejcic, M; de Batlle, J; Ricci, C; Biessy, C; Perrier, F; Huybrechts, I; Weiderpass, E; Boutron-Ruault, M C; Cadeau, C; His, M; Cox, D G; Boeing, H; Fortner, R T; Kaaks, R; Lagiou, P; Trichopoulou, A; Benetou, V; Tumino, R; Panico, S; Sieri, S; Palli, D; Ricceri, F; Bueno-de-Mesquita, H B As; Skeie, G; Amiano, P; Sánchez, M J; Chirlaque, M D; Barricarte, A; Quirós, J R; Buckland, G; van Gils, C H; Peeters, P H; Key, T J; Riboli, E; Gylling, B; Zeleniuch-Jacquotte, A; Gunter, M J; Romieu, I; Chajès, V

    2017-03-15

    Epidemiological studies have reported inconsistent findings for the association between B vitamins and breast cancer (BC) risk. We investigated the relationship between biomarkers of folate and vitamin B12 and the risk of BC in the European Prospective Investigation into Cancer and Nutrition (EPIC) cohort. Plasma concentrations of folate and vitamin B12 were determined in 2,491 BC cases individually matched to 2,521 controls among women who provided baseline blood samples. Multivariable logistic regression models were used to estimate odds ratios by quartiles of either plasma B vitamin. Subgroup analyses by menopausal status, hormone receptor status of breast tumors (estrogen receptor [ER], progesterone receptor [PR] and human epidermal growth factor receptor 2 [HER2]), alcohol intake and MTHFR polymorphisms (677C > T and 1298A > C) were also performed. Plasma levels of folate and vitamin B12 were not significantly associated with the overall risk of BC or by hormone receptor status. A marginally positive association was found between vitamin B12 status and BC risk in women consuming above the median level of alcohol (ORQ4-Q1  = 1.26; 95% CI 1.00-1.58; Ptrend  = 0.05). Vitamin B12 status was also positively associated with BC risk in women with plasma folate levels below the median value (ORQ4-Q1  = 1.29; 95% CI 1.02-1.62; Ptrend  = 0.03). Overall, folate and vitamin B12 status was not clearly associated with BC risk in this prospective cohort study. However, potential interactions between vitamin B12 and alcohol or folate on the risk of BC deserve further investigation.

  4. Seasonal variations of biogenic secondary organic aerosol tracers in Cape Hedo, Okinawa

    NASA Astrophysics Data System (ADS)

    Zhu, Chunmao; Kawamura, Kimitaka; Fu, Pingqing

    2016-04-01

    Secondary organic aerosol (SOA) substantially contributes to particulate organic matter affecting the regional and global air quality and the climate. Total suspended particle (TSP) samples were collected in October 2009 to February 2012 on a weekly basis at Cape Hedo, Okinawa, Japan in the western North Pacific Rim, an outflow region of Asian aerosols and precursors. The TSP samples were analyzed for SOA tracers derived from biogenic volatile organic compounds (BVOCs). Total isoprene-SOA tracers showed a maximum in summer (2.12 ± 2.02 ng m-3) and minimum in winter (1.16 ± 0.92 ng m-3). This seasonality is mainly controlled by isoprene emission from the local subtropical forest, followed by regional scale emission of isoprene from the surrounding seas and long-range transported air masses. Total monoterpene-SOA tracers peaked in March (3.38 ± 2.03 ng m-3) followed by October (2.95 ± 1.62 ng m-3). In contrast, sesquiterpene-SOA tracer, β-caryophyllinic acid, showed winter maximum (1.63 ± 1.18 ng m-3) and summer minimum (0.20 ± 0.46 ng m-3). The variations of the monoterpene- and sesquiterpene-SOA tracers are likely related to the continental outflow of oxidation products of BVOC. Using a tracer-based method, we estimated the total biogenic SOC of 0.25-157 ng m-3 (mean 35.8 ng m-3) that accounts for 0.01-9.8% (mean 2.7%) of aerosol organic carbon. Our study suggests that SOA formation in the western North Pacific Rim is involved with not only local but also regional emissions followed by long-range atmospheric transport.

  5. Use of microbial analysis to evaluate denitrification in the karstic aquifer of Okinawa, Japan

    NASA Astrophysics Data System (ADS)

    Yasumoto, J.

    2014-12-01

    Denitrification, a microbial process in the nitrogen cycle, is a facultative respiratory pathway in which nitrate (NO3-), nitrite (NO2-), nitric oxide (NO), and nitrous oxide (N2O), successively, are reduced to nitrogen gas (N2). This study explores the use of microbial analysis to evaluate the processes involved in nitrate attenuation in groundwater. Polymerase chain reaction (PCR)-denaturing gradient gel electrophoresis (DGGE) is used to identify denitrifiers based only on their 16SrRNA gene sequences, and Real-Time PCR analysis is used to quantify nitrite reducing genes (nirK and nirS), this suggest that a new methods for detecting denitrification activity by comparing the gene dosage that has been detected by RT-PCR and the value of the δ15NNO3- and δ18ONO3-. This study focuses on a zone of significant NO3- attenuation occurring at underground dam catchment area in the karstic Ryukyu limestone aquifer, which is located southern part of Okinawa, Japan. As a result of microbial analysis, the bacteria were detected at all observation points which have been reported to have denitrification ability. And it has been confirmed that the bacteria has a gene nirS which is related to denitrification. In addition, many bacteria related to denitrification have been extracted from suspended solids more than from groundwater in the aquifer. And, the correlation was high between nirK /nirS gene dosage that has been detected by RT-PCR and the value of the δ15N and δ18O; therefore, this study demonstrates the effectiveness of using Real-Time PCR analysis for providing insights into the processes affecting nitrate attenuation in ground water.

  6. Experimental study on hydrothermal alteration of dacite collected from the Hatoma knoll, Okinawa Trough, Japan

    NASA Astrophysics Data System (ADS)

    Masaki, Y.; Shibuya, T.; Yoshizaki, M.; Nozaki, T.; Suzuki, K.; Takai, K.

    2012-12-01

    The Okinawa Trough is a back-arc basin located between the southern part of Japan offshore and Taiwan North. Hemipelagic sediments supplied from the continents covered at the bottom of the trough. Vigorous hydrothermal activity exists with rifting. The Hatoma Knoll (the depth 1500 m) is one of the active hydrothermal fields located in the southern part of the trough. The measured highest temperature of the vent fluid was 301 °C. The rocks were sampled by manned research submersible ship "Shinkai 2000" in 2000. During the dive program, 25 hydrothermal fluid samples were collected and their chemical compositions were analyzed (Nakano et al., 2001). As a result, it was revealed that the compositions of the hydrothermal vent fluids are strongly influenced by the dacitic rock presumably in a reaction zone. In this presentation, we will show the results of experimental study on hydrothermal alteration dacite sample collected from the Hatoma Knoll. The sample was obtained near the hydrothermal area with ROV "Hyper-Dolphin" during the NT11-20 cruise in 2011. The experiment simulating water/rock reaction was conducted at 300 °C and 325 bars for more than 2,200 hours using the dacite sample and synthetic seawater. The reaction cell is made of a gold tube with a titanium head, which is pressurized in an autoclave. The chemical components of reacted fluid and altered dacite were measured with pH meter, ion chromatograph, ICP-AES, gas chromatograph, and XRD. We also observed thin section of the samples before and after the experiment under microscope. The major element concentrations of the reacted fluid were comparable with those of the natural hydrothermal fluids in the Hatoma Knoll in an order of magnitude except for Mn. As a result of XRD analysis, there was no significant difference in mineral assemblage between the starting material and the experimental product.

  7. Vibrio ishigakensis sp. nov., in Halioticoli clade isolated from seawater in Okinawa coral reef area, Japan.

    PubMed

    Gao, Feng; Al-Saari, Nurhidayu; Rohul Amin, A K M; Sato, Kazumichi; Mino, Sayaka; Suda, Wataru; Oshima, Kenshiro; Hattori, Masahira; Ohkuma, Moriya; Hargreaves, Paulo Iiboshi; Meirelles, Pedro Milet; Thompson, Fabiano L; Thompson, Cristiane; Gomez-Gil, Bruno; Sawabe, Toko; Sawabe, Tomoo

    2016-07-01

    Five novel strains showing non-motile, alginolytic, halophilic and fermentative features were isolated from seawater samples off Okinawa in coral reef areas. These strains were characterized by an advanced polyphasic taxonomy including genome based taxonomy using multilocus sequence analysis (MLSA) and in silico DNA-DNA similarity (in silico DDH). Phylogenetic analyses on the basis of 16S rRNA gene sequences revealed that the isolates could be assigned to the genus Vibrio, however they were not allocated into any distinct cluster with known Vibrionaceae species. MLSA based on eight protein-coding genes (gapA, gyrB, ftsZ, mreB, pyrH, recA, rpoA, and topA) showed the vibrios formed an outskirt branch of Halioticoli clade. The experimental DNA-DNA hybridization data revealed that the five strains were in the range of being defined as conspecific but separate from nine Halioticoli clade species. The G+C contents of the Vibrio ishigakensis strains were 47.3-49.1mol%. Both Amino Acid Identity and Average Nucleotide Identity of the strain C1(T) against Vibrio ezurae HDS1-1(T), Vibrio gallicus HT2-1(T), Vibrio halioticoli IAM 14596(T), Vibrio neonatus HDD3-1(T) and Vibrio superstes G3-29(T) showed less than 95% similarity. The genome-based taxonomic approach by means of in silico DDH values also supports the V. ishigakensis strains being distinct from the other known Halioticoli clade species. Sixteen traits (growth temperature range, DNase and lipase production, indole production, and assimilation of 10 carbon compounds) distinguished these strains from Halioticoli clade species. The names V. ishigakensis sp. nov. is proposed for the species of Halioticoli clade, with C1(T) as the type strain (JCM 19231(T)=LMG 28703(T)).

  8. Association of Plasma Phospholipid n-3 and n-6 Polyunsaturated Fatty Acids with Type 2 Diabetes: The EPIC-InterAct Case-Cohort Study

    PubMed Central

    Forouhi, Nita G.; Schulze, Matthias B.; Zheng, Jusheng; Ye, Zheng; Kröger, Janine; Wang, Laura Yun; Summerhill, Keith; Griffin, Julian L.; Feskens, Edith J. M.; Affret, Aurélie; Amiano, Pilar; Boeing, Heiner; Dow, Courtney; Fagherazzi, Guy; Franks, Paul W.; Gonzalez, Carlos; Kaaks, Rudolf; Key, Timothy J.; Khaw, Kay Tee; Kühn, Tilman; Mortensen, Lotte Maxild; Nilsson, Peter M.; Overvad, Kim; Pala, Valeria; Palli, Domenico; Panico, Salvatore; Quirós, J. Ramón; Rolandsson, Olov; Sacerdote, Carlotta; Scalbert, Augustin; Slimani, Nadia; Spijkerman, Annemieke M. W.; Tjonneland, Anne; Tumino, Rosario; van der A, Daphne L.; Riboli, Elio

    2016-01-01

    Background Whether and how n-3 and n-6 polyunsaturated fatty acids (PUFAs) are related to type 2 diabetes (T2D) is debated. Objectively measured plasma PUFAs can help to clarify these associations. Methods and Findings Plasma phospholipid PUFAs were measured by gas chromatography among 12,132 incident T2D cases and 15,919 subcohort participants in the European Prospective Investigation into Cancer and Nutrition (EPIC)-InterAct study across eight European countries. Country-specific hazard ratios (HRs) were estimated using Prentice-weighted Cox regression and pooled by random-effects meta-analysis. We also systematically reviewed published prospective studies on circulating PUFAs and T2D risk and pooled the quantitative evidence for comparison with results from EPIC-InterAct. In EPIC-InterAct, among long-chain n-3 PUFAs, α-linolenic acid (ALA) was inversely associated with T2D (HR per standard deviation [SD] 0.93; 95% CI 0.88–0.98), but eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA) were not significantly associated. Among n-6 PUFAs, linoleic acid (LA) (0.80; 95% CI 0.77–0.83) and eicosadienoic acid (EDA) (0.89; 95% CI 0.85–0.94) were inversely related, and arachidonic acid (AA) was not significantly associated, while significant positive associations were observed with γ-linolenic acid (GLA), dihomo-GLA, docosatetraenoic acid (DTA), and docosapentaenoic acid (n6-DPA), with HRs between 1.13 to 1.46 per SD. These findings from EPIC-InterAct were broadly similar to comparative findings from summary estimates from up to nine studies including between 71 to 2,499 T2D cases. Limitations included potential residual confounding and the inability to distinguish between dietary and metabolic influences on plasma phospholipid PUFAs. Conclusions These large-scale findings suggest an important inverse association of circulating plant-origin n-3 PUFA (ALA) but no convincing association of marine-derived n3 PUFAs (EPA and DHA) with T2D. Moreover, they

  9. The InterAct Project: An Examination of the Interaction of Genetic and Lifestyle Factors on the Incidence of Type 2 Diabetes in the EPIC Study

    PubMed Central

    Langenberg, C; Sharp, S; Forouhi, NG; Franks, P; Schulze, MB; Kerrison, N; Ekelund, U; Barroso, I; Panico, S; Tormo, M; Spranger, J; Griffin, S; van der Schouw, YT; Amiano, P; Ardanaz, E; Arriola, L; Balkau, B; Barricarte, A; Beulens, JWJ; Boeing, H; Bueno-de-Mesquita, HB; Buijsse, BB; Chirlaque Lopez, MD; Clavel-Chapelon, F; Crowe, FL; de Lauzon-Guillan, B; Deloukas, P; Dorronsoro, M; Drogan, DD; Froguel, P; Gonzalez, C; Grioni, S; Groop, L; Groves, C; Hainaut, P; Halkjaer, J; Hallmans, G; Hansen, T; Kaaks, R; Key, TJ; Khaw, K; Koulman, A; Mattiello, A; Navarro, C; Nilsson, P; Norat, T; Overvad, K; Palla, L; Palli, D; Pedersen, O; Peeters, PH; Quirós, JR; Ramachandran, A; Rodriguez-Suarez, L; Rolandsson, O; Romaguera, D; Romieu, I; Sacerdote, C; Sánchez, M; Sandbaek, A; Slimani, N; Sluijs, I; Spijkerman, AMW; Teucher, B; Tjonneland, A; Tumino, R; van der A, DL; Verschuren, WMM; Tuomilehto, J; Feskens, E; McCarthy, M; Riboli, E; Wareham, NJ

    2014-01-01

    Background Studying gene-lifestyle interaction may help to identify lifestyle factors that modify genetic susceptibility and uncover genetic loci exerting important subgroup effects. Adequately powered studies with prospective, unbiased, standardised assessment of key behavioural factors for gene-lifestyle studies are lacking. Objective To establish a type 2 diabetes case-cohort study designed to investigate how genetic and potentially modifiable lifestyle and behavioral factors, particularly diet and physical activity, interact in their influence on the risk of developing type 2 diabetes. Methods Funded by the Sixth European Framework Programme, InterAct consortium partners ascertained and verified incident cases of type 2 diabetes occurring in European Prospective Investigation into Cancer and Nutrition (EPIC) cohorts between 1991 and 2007 from 8 of the 10 EPIC countries. A pragmatic, high sensitivity approach was used for case ascertainment including multiple sources at each EPIC centre, followed by diagnostic verification. Prentice-weighted Cox regression and random effects meta-analyses were used to investigate differences in diabetes incidence by age and sex. Results A total of 12,403 verified incident cases of type 2 diabetes occurred during 3.99 million person-years of follow-up of 340,234 EPIC participants eligible for InterAct. We defined a centre stratified subcohort of 16,154 individuals for comparative analyses. Individuals with incident diabetes that were randomly selected into the subcohort (n=778) were included as cases in the analyses. All prevalent diabetes cases were excluded from the study. InterAct cases were followed-up for an average of 6.9 years, 49.7% were men. Mean baseline age and age at diagnosis were 55.6 and 62.5 years, mean BMI and waist were 29.4 kg/m2 and 102.7 cm in men, and 30.1 kg/m2 and 92.8 cm in women, respectively. Risk of type 2 diabetes increased linearly with age, with an overall hazard ratio (95% CI) of 1.56 (1.48; 1

  10. Survey of the antibody against japanese encephalitis virus in Ryukyu wild boars (Sus scrofa riukiuanus) in Okinawa, Japan.

    PubMed

    Nidaira, Minoru; Taira, Katsuya; Itokazu, Kiyomasa; Kudaka, Jun; Nakamura, Masaji; Ohno, Atsusi; Takasaki, Tomohiko

    2007-09-01

    Serum specimens were collected from 99 wild boars in the Northern area of the main Okinawa Island and from 27 wild boars on Iriomote Island in Okinawa Prefecture from 1997 to 2005. Sera were tested for Japanese encephalitis virus (JEV) antibody by hemagglutination inhibition assay and IgG enzyme-linked immunosorbent assay. Sixty-four samples (64.6%) in the Northern area and 1 sample (3.7%) from Iriomote Island were positive for the JEV antibody. The difference in seroprevalence between the Northern area and Iriomote Island was statistically significant (P < 0.01, chi2 test). This difference may be due to the lack of a pig farm on Iriomote Island, whereas wild boars in the Northern area may be infected with JEV, amplified on pig farms. It is likely that there has recently been an increase in the number of wild boars living close to humans in certain areas of Japan. This in turn increases the possibility that wild boars are infected with JEV, which is amplified on pig farms, and these infected animals may play a role in carrying JEV to other regions of the country.

  11. A study of ambient seismic noise on the seafloor of the Okinawa trough and the Bashi Channel south of Taiwan

    NASA Astrophysics Data System (ADS)

    Lin, C.; Kuo, B.; Wang, C.

    2013-12-01

    Since September. 2006, the Institute of Earth Sciences, Acadmia Sinica (IES-AS) has begun deployment of Ocean Bottom Seismometers (OBSs) in the waters around Taiwan in collaboration with the National Sun Yat-sen University and the Taiwan Ocean Research Institute. So far there are three kinds of OBSs with different bandwidth that have been deployed and analyzed: 120 s - 50 Hz for WHOI designed broadband OBS, 60 s - 50 Hz for Lobster, KUM, and 20 s - 45 Hz for Yardbird-20s designed by IES (Lin et al., 2012). We have analyzed noise levels for these OBSs deployed in the Okinawa trough to the NE of Taiwan and, the Bashi channel south of Taiwan, and the Huatung basin east of Tawian. The early results had very few samples in the Okinawa trough and the Huatung basin ( Lin et al., 2010). This poster presents new results offshore southern Taiwan and increases the samples in previously studied regions. References: Ching-Ren Lin, Chai-ChangWang, Po-Chi Chen, Hsu-Kuang Chang, Jia-Pu Jang, Ban-Yuan Kuo (2012), OBS development and data analysis in Taiwan. 2012 AGU Fall Meeting. Lin, C.R., B. Y. Kuo, W. T. Liang, W. C. Chi, Y. C. Huang, J. Collins and C. Y. Wang (2010), Ambient Noise and Teleseismic Signals Recorded by Ocean-Bottom Seismometers Offshore Eastern Taiwan. Terr. Atmos. Ocea Sci., 21, No. 5, 743-75510.

  12. Proposal for Japanese encephalitis surveillance using captured invasive mongooses under an eradication project on Okinawa Island, Japan.

    PubMed

    Saito, Mika; Nakata, Katsushi; Nishijima, Taku; Yamashita, Katsuhiro; Saito, Anna; Ogura, Go

    2009-06-01

    A project to eradicate invasive small Asian mongooses (Herpestes javanicus) is underway to conserve the unique ecosystem of Okinawa Island, Japan. In the present study, we tried to elucidate whether the mongoose is a host of Japanese encephalitis virus (JEV) and to evaluate the reliability of surveillance of Japanese encephalitis (JE) using this species. Culex tritaeniorhynchus, the main vector mosquito of JEV, feeds on the mongoose. Eighty-five (35.4%) of 240 wild small Asian mongooses captured between 2001 and 2005 had neutralizing antibodies against more than one of four JEV strains. Prevalence rates of JEV antibodies tended to increase with body weight and length of the animals. One of three sentinel mongooses showed a temporal change in antibody titer. These results indicate that the small Asian mongooses on Okinawa Island are sensitive to JEV. From the antibody titers and the locations of capture, the JEV active area was clarified. We propose that surveillance of JE using mongooses captured under the eradication program is reliable.

  13. Organic tracers of primary biological aerosol particles at subtropical Okinawa Island in the western North Pacific Rim

    NASA Astrophysics Data System (ADS)

    Zhu, Chunmao; Kawamura, Kimitaka; Kunwar, Bhagawati

    2015-06-01

    Primary biological aerosol particles (PBAPs) play an important role in affecting atmospheric physical and chemical properties. Aerosol samples were collected at Cape Hedo, Okinawa Island, Japan, from October 2009 to February 2012 and analyzed for five primary saccharides and four sugar alcohols as PBAP tracers. We detected high levels of sucrose in spring when blossoming of plants happens and prolifically emits pollen to the air. Concentrations of glucose, fructose, and trehalose showed levels higher than the other saccharides in spring in 2010. In comparison, primary saccharide levels were mutually comparable in spring, summer, and autumn in 2011, indicating the interannual variability of their local production in subtropical forests, which is driven by local temperature and radiation. High trehalose events were found to be associated with Asian dust outflows, indicating that Asian dust also contributes to PBAPs at Okinawa. Sugar alcohols peaked in summer and correlated with local precipitation and temperature, indicating high microbial activities. Positive matrix factorization analysis confirmed that the PBAPs are mainly derived from local vegetation, pollen, and fungal spores. A higher contribution of PBAP tracers to water-soluble organic carbon (WSOC) was found in summer (14.9%). The annual mean ambient loadings of fungal spores and PBAPs were estimated as 0.49 µg m-3 and 4.12 µg m-3, respectively, using the tracer method. We report, for the first time, year-round biomarkers of PBAP and soil dust and their contributions to WSOC in the subtropical outflow region of the Asian continent.

  14. Investigation of anthropogenic-origin-metals in the atmospheric aerosols collected at Cape Hedo, Okinawa, Japan

    NASA Astrophysics Data System (ADS)

    Murayama, H.; Azechi, S.; Tsuhako, A.; Miyagi, Y.; Kasaba, T.; Arakaki, T.

    2014-12-01

    Atmospheric aerosols are important to atmospheric chemistry, and affect our lives. Aerosols include fine particles, which consist of inorganic compounds, organic substances, heavy metals, etc. Aerosols can be roughly separated into natural and anthropogenic origins. For example, natural origins include wind-blown sea-salt, Asian dust (called Kosa in Japan), etc. Anthropogenic origins include burning of fossil fuel and agricultural biomass, automobiles, industrial activities, etc. In Japan, Kosa is the most well-known aerosol. This study investigated anthropogenic-origin-metals present in the aerosols. Aerosol samples were collected at Cape Hedo Atmospheric Aerosol Monitoring Station (CHAAMS) in Okinawa Island, Japan with a high volume air sampler. Samples analyzed for this study were collected between January 2008 and August 2014. A 1/8 of aerosol filter was digested by the mixture of acids and oxidant (nitric acid/hydrogen fluoride/hydrogen peroxide). The sample was filtered by 0.45 μm membrane filter before analyses. Metal ion concentrations were measured by atomic absorption spectrophotometry (Na, Mg, K) and inductively-coupled plasma mass spectrometer (Al, Fe, Ca, Ti, Mn, V, Cu, Cd, Zn, Pb). Air mass movement was analyzed by NOAA's HYSPRIT model. Results showed that concentrations of heavy metals were high during winter and spring, and the lowest in summer. V/Mn ratios were used as an indicator for heavy oil burning. High V/Mn ratios were observed during maritime air mass periods. On the other hand, Pb/Zn ratio was used as an indicator for leaded gasoline usage, which was high when air mass was coming from Asian continent during winter and spring. Average Pb/Zn ratio was 0.65. Non-sea-salt K (nss-K) was used as an indicator for biomass burning, and showed good correlation with total organic carbon (TOC) concentrations. However, nss-K and crustal-origin-metals also showed good correlation. Thus, we have to be careful when considering whether nss-K is from

  15. Geochemical Evidence for Recent Hydrothermal Alteration of Marine Sediments in Mid-Okinawa Trough, Southwest Japan

    NASA Astrophysics Data System (ADS)

    Tanaka, A.; Abe, G.; Yamaguchi, K. E.

    2014-12-01

    Recent studies have shown that submarine hydrothermal system supports diverse microbial life. Bio-essential metals supporting such microbial communities were released from basalts by high-temperature water-rock interaction in deeper part of the oceanic crust and carried by submarine fluid flow. Its total quantity in global hydrothermal settings has been estimated to be on the order of ~1019 g/yr, which is surprisingly on the same order of the total river flows (Urabe et al., 2011). Therefore, it is important to explore how submarine river system works, i.e., to understand mechanism and extent of elemental transport, which should lead to understanding of the roles of hydrothermal circulation in oceanic crust in controlling elemental budget in the global ocean and geochemical conditions to support deep hot biosphere.  We performed REE analysis of marine sediments influenced by submarine hydrothermal activity in Mid-Okinawa Trough. The sediment samples used in this study are from IODP site at Iheya North region and JADE site at Izena region. The samples show alternation between volcanic and clastic sediments. Hydrothermal fluids of this area contain elevated concentrations of volatile components such as H2, CO2, CH4, NH4+, and H2S, supporting diverse chemoautotrophic microbial community (Nakagawa et al., 2005). The purpose of this study is to examine the effect of hydrothermal activity on the REE signature of the sediments. Chondrite-normalized REE patterns of the samples show relative enrichment of light over heavy REEs, weak positive Ce anomalies, and variable degrees of negative Eu anomalies. The REE patterns suggest the sediments source was mainly basalt, suggesting insignificant input of continental materials. Negative Eu anomalies found in the IODP site become more pronounced with increasing depth, suggesting progressive increase of hydrothermal alteration where Eu was reductively dissolved into fluids by decomposition of feldspars. Contrary, at the JADE site

  16. Geochemical observations within the water column at the CO2-rich hydrothermal systems Hatoma Knoll and Yonaguni Knoll IV, in the southern Okinawa Trough

    NASA Astrophysics Data System (ADS)

    Kedzior, Stine; Buß, Antje; Schneider, Bernd; Schneider von Deimling, Jens; Sültenfuß, Jürgen; Walter, Maren; Mertens, Christian; Rehder, Gregor

    2016-09-01

    The Okinawa Trough is one of three known hydrothermal sites worldwide where liquid carbon dioxide is emitted from the seafloor into the water column. In March 2008, investigations were performed at two active areas, Yonaguni Knoll IV and Hatoma Knoll, in order to identify impacts of hydrothermal venting on the water column chemistry. Vertical profiles of pH and redox potential (Eh) were recorded and discrete water samples were taken for the analysis of total carbon dioxide (CT) and helium (3He, 4He). Anomalies with respect to reference stations (ΔCT, ΔpH) and 3He with respect to saturation with the atmosphere (3Heexcess) were used to characterize the impact of hydrothermal vents. These data indicate that the flux of CO2 into the water column is dominated by hot hydrothermal CO2-rich vents located in close proximity to the liquid CO2 emission sites. Bubbles and droplets sampled at the cold gas outlets at Hatoma Knoll differed considerably from the water column regarding CO2/3He ratios, and thus, provide additional evidence that cold liquid phase CO2 is of minor importance for the total CO2 flux at both hydrothermal systems. Although hydrothermal vents at back-arc basins are known to emit large amounts of acids other than CO2, the correlation between ΔpH and ΔCT at both research areas clearly suggests that the observed pH reduction is mainly caused by the addition of CO2. Deviating ΔCT/3He and ΔCT/ΔpH ratios and the prevailing water currents indicate a yet undiscovered vent site at the flank of a seamount in the northeast.

  17. K2 observations of pulsating subdwarf B stars: Analysis of EPIC 203948264 observed during Campaign 2

    NASA Astrophysics Data System (ADS)

    Ketzer, L.; Reed, M. D.; Baran, A. S.; Németh, P.; Telting, J. H.; Østensen, R. H.; Jeffery, C. S.

    2017-01-01

    We apply asteroseismic tools to the newly-discovered pulsator EPIC 203948264, observed with K2, the two-gyro mission of the Kepler space telescope. A time series analysis of the 83 day Campaign 2 (C2) short cadence data set has revealed a g -mode pulsation spectrum with 22 independent pulsation periods between 0.5 and 2.8 hours. Most of the pulsations fit the asymptotic period sequences for ℓ = 1 or 2, with average period spacings of 261.3 ± 1.1 s and 151.18 ± 0.37 s, respectively. The pulsation amplitudes are below 0.77 ppt and vary over time. We include updated spectroscopic parameters, including atmospheric abundances and radial velocities which give no indication for binarity in this star. We detect one possible low-amplitude multiplet which corresponds to a rotation period of 46 days or longer. EPIC 203948264 appears as another slowly rotating sdB star.

  18. Modern laparoscopy and the archery episode in the greatest epic of India: Mahabarata.

    PubMed

    Natarajan, K

    2006-07-01

    The laparoscopic surgeon is trained to acquire advanced skills to perform the complicated laparoscopic surgery of the target tissue in a three-dimensional (3D) space by viewing its two-dimensional (2D) video image. This technique finds its parallel in a very ancient archery episode portrayed in the longest and the greatest Indian epic, Mahabarata. In this epic, Arjuna, the master archer, is required to employ the strategy of aiming at the eye of a target fish rotating above his head by viewing its reflected image below in water; of course, all this to win the hand of a beautiful princess! Arjuna is so trained that he cannot but excel in focusing his attention on his target. A comparative study of the laparoscopic surgeon and the ancient master archer is done in this paper with a view to throwing light on the interesting similarities between the archer and the modern laparoscopic surgeon with respect to training methods, skills, and techniques.

  19. HPC-EPIC for High Resolution Simulations of Environmental and Sustainability Assessment

    SciTech Connect

    Wang, Dali; Post, Wilfred M; Kang, Shujiang; Nichols, Dr Jeff A

    2011-01-01

    Multiple concerns over the impact of wide scale changes in land management have motivated comprehensive analyses of environmental sustainability of food and biofuel production. These call for high-resolution land management tools that enable comprehensive analyses of natural resources for decision-making. The agroecosystem simulation models with the most biophysical detail are point models, which often have a user interface that allows users to provide inputs and examine results for agricultural field scale analyses. These are not able to meet the needs of high-resolution regional or national simulations. We describe an efficient computational approach for deployment of the Environmental Policy Integrated Climate (EPIC) model at high-resolution spatial scales using high performance computing (HPC) techniques. We developed an integrated procedure for executing the millions of simulations required for high-resolution, regional studies, and also address building databases for model initialization, model forcing data, and model outputs. We first ported EPIC from Windows to an HPC platform and validated output from both platforms. We then developed methods of packaging simulations for efficient, unattended parallel execution on the HPC cluster. The job queuing system, Portable Batch System (PBS) is employed to control job submission. Simulation outputs are extracted to PostgreSQL database for analysis. In a case study covering four counties in central Wisconsin using HPC-EPIC, we finished over 140 K simulations in a total of 10 h on an HPC cluster using 20 nodes. This is a speedup of 40 times. More nodes could be used to achieve larger speedups. The HPC-EPIC model developed in this study is anticipated to provide information useful for high-resolution land use management and decision making. The framework for high-performance computing can be extended to other traditional, point-based biophysical simulation models.

  20. Experience with the SNS LabVIEW/EPICS-Based Diagnostics Instruments

    SciTech Connect

    Blokland, Willem; Assadi, Saeed

    2004-11-10

    The SNS Diagnostics Group uses rack-mounted PCs running LabVIEW and EPICS to implement its instruments as network attached devices. Many of these instruments, such as wire scanners and beam position monitors, come from the partner labs. The final integration and testing is done at SNS. We have now gone through several commissioning runs with success. This paper describes the integration, the commissioning, and the physics performance of the devices.

  1. The improved physical activity index for measuring physical activity in EPIC Germany.

    PubMed

    Wientzek, Angelika; Vigl, Matthäus; Steindorf, Karen; Brühmann, Boris; Bergmann, Manuela M; Harttig, Ulrich; Katzke, Verena; Kaaks, Rudolf; Boeing, Heiner

    2014-01-01

    In the European Investigation into Cancer and Nutrition study (EPIC), physical activity (PA) has been indexed as a cross-tabulation between PA at work and recreational activity. As the proportion of non-working participants increases, other categorization strategies are needed. Therefore, our aim was to develop a valid PA index for this population, which will also be able to express PA continuously. In the German EPIC centers Potsdam and Heidelberg, a clustered sample of 3,766 participants was re-invited to the study center. 1,615 participants agreed to participate and 1,344 participants were finally included in this study. PA was measured by questionnaires on defined activities and a 7-day combined heart rate and acceleration sensor. In a training sample of 433 participants, the Improved Physical Activity Index (IPAI) was developed. Its performance was evaluated in a validation sample of 911 participants and compared with the Cambridge Index and the Total PA Index. The IPAI consists of items covering five areas including PA at work, sport, cycling, television viewing, and computer use. The correlations of the IPAI with accelerometer counts in the training and validation sample ranged r = 0.40-0.43 and with physical activity energy expenditure (PAEE) r = 0.33-0.40 and were higher than for the Cambridge Index and the Total PA Index previously applied in EPIC. In non-working participants the IPAI showed higher correlations than the Cambridge Index and the Total PA Index, with r = 0.34 for accelerometer counts and r = 0.29 for PAEE. In conclusion, we developed a valid physical activity index which is able to express PA continuously as well as to categorize participants according to their PA level. In populations with increasing rates of non-working people the performance of the IPAI is better than the established indices used in EPIC.

  2. Using EPIC to Find Conflicts, Inconsistencies, and Gaps in Department of Defense Policies

    DTIC Science & Technology

    2013-01-01

    new tool that automates one step of the methodology. We describe the framework, methodol- ogy, and new software- based tool and demonstrate with case...analysts showed that 113 of the extractions were related to standards. Analy- 1 The EPIC tool is a Microsoft (MS) Office– based program written in...designated approving authority DARS DoD Architecture Registry System DAS Defense Acquisition System DATO Denial of Authorization to Operate DBSMC Defense

  3. When is pile-up important in the XMM-Newton EPIC cameras?

    NASA Astrophysics Data System (ADS)

    Jethwa, P.; Saxton, R.; Guainazzi, M.; Rodriguez-Pascual, P.; Stuhlinger, M.

    2015-09-01

    Context. Pile-up in X-ray charged couple device (CCD) detectors is defined as the reconstruction of independent events in the same detection cell as a single event during a read-out cycle. Pile-up can seriously compromise the spectral performance, modifying both the flux and the spectral shape of celestial sources. Aims: In this paper we define rigorous metrics to characterise the effect of pile-up in terms of flux loss and spectral distortion. Methods: We extend analytical formulae derived for pile-up on CCD detectors with the inclusion of the calibrated energy-dependence of the point spread function. We validated our analytical results through both Monte-Carlo simulations of the EPIC cameras on-board XMM-Newton and comparison with pile-up diagnostics in observed data. Results: We estimate new count rate levels corresponding to a given degree of flux loss and spectral distortion for each EPIC imaging acquisition mode and provide guidance to observers wishing to estimate these values in their own observations. Conclusions: We strongly recommend using these thresholds in planning future observations with the EPIC cameras.

  4. Association between socioeconomic and demographic characteristics and utilization of colonoscopy in the EPIC-Heidelberg cohort.

    PubMed

    Hermann, Silke; Friedrich, Susanne; Haug, Ulrike; Rohrmann, Sabine; Becker, Nikolaus; Kaaks, Rudolf

    2015-03-01

    We aimed to describe the utilization of colonoscopy and its association with sociodemographic characteristics within the European Prospective Investigation into Cancer and Nutrition (EPIC)-Heidelberg cohort study. We included 15 014 study participants (43% men) of the EPIC-Heidelberg cohort recruited between 1994 and 1998. At baseline recruitment, as well as in the 3-yearly follow-up surveys, study participants completed questionnaires on lifestyle, socioeconomic background variables, health status, and use of medications and medical services, including colonoscopy examinations. The present analyses focused on participants who completed the question on colonoscopy examination in all follow-up rounds. Our results show that by the end of the fourth follow-up round, more than half of all participants of the EPIC-Heidelberg cohort had had a colonoscopy. Colonoscopy was associated with some socioeconomic and demographic characteristics: a positive association with vocational training level as well as overall socioeconomic status level [International Standard Classification of Education (ISCED) classification]. A negative association was found for household size and employment status. Colonoscopy usage increased steeply within the subgroup of participants older than 55 years of age and decreased again within the subgroup of participants older than 75 years of age. Organized colorectal cancer screening should include a written invitation system, to overcome the problem of sociodemographic-related differential awareness of and attendance at colonoscopy examinations. Also, the high proportion of prescreened individuals should be taken into account to avoid unnecessary re-examinations.

  5. Insights into East Pacific ITCZ convection from EPIC observations and cloud-resolving modeling

    NASA Astrophysics Data System (ADS)

    Bretherton, C. S.; Blossey, P. N.

    2007-05-01

    During the EPIC 2001 project, a wealth of airborne and ship-based measurements (including a continuous scanning precipitation radar and vertically-pointing cloud radar) were made in a mesoscale region around 10 N, 95 W. Several studies based on this data have documented the vertical and horizontal structure of the convection and its connection to surface wind speed, convective inhibition, and easterly waves. Lower-tropospheric humidity, surface latent heat fluxes and mesoscale SST variability have been suggested as primary drivers modulating area-averaged rainfall over this area. We present the first EPIC cloud-resolving model (CRM) simulations of the EPIC ITCZ study area. These can be compared with the whole suite of atmospheric observations and allow exploration of the correlation of rainfall with the hypothesized drivers. We compare simulations conventionally forced with specified horizontal advection and vertical motion with `weak-temperature gradient' simulations in which the vertical motion is chosen to maintain the observed tropospheric temperature, and simulations including mesoscale SST variability, and use these to test and enhance our understanding of the thermodynamic control of ITCZ convection in the east Pacific.

  6. Linear regression calibration: theoretical framework and empirical results in EPIC, Germany.

    PubMed

    Kynast-Wolf, Gisela; Becker, Nikolaus; Kroke, Anja; Brandstetter, Birgit R; Wahrendorf, Jürgen; Boeing, Heiner

    2002-01-01

    Large scale dietary assessment instruments are usually based on the food frequency technique and have therefore to be tailored to the involved populations with respect to mode of application and inquired food items. In multicenter studies with different populations, the direct comparability of dietary data is therefore a challenge because each local dietary assessment tool might have its specific measurement error. Thus, for risk analysis the direct use of dietary measurements across centers requires a common reference. For example, in the European prospective cohort study EPIC (European Prospective Investigation into Cancer and Nutrition) a 24-hour recall was chosen to serve as such a reference instrument which was based on a highly standardized computer-assisted interview (EPIC-SOFT). The 24-hour recall was applied to a representative subset of EPIC participants in all centers. The theoretical framework of combining multicenter dietary information was previously published in several papers and is called linear regression calibration. It is based on a linear regression of the food frequency questionnaire to the reference. The regression coefficients describe the absolute and proportional scaling bias of the questionnaire with the 24-hour recall taken as reference. This article describes the statistical basis of the calibration approach and presents first empirical results of its application to fruit, cereals and meat consumption in EPIC Germany represented by the two EPIC centers, Heidelberg and Potsdam. It was found that fruit could be measured well by the questionnaire in both centers (lambdacirc; = 0.98 (males) and lambdacirc; = 0.95 (females) in Heidelberg, and lambdacirc; = 0.86 (males) and lambdacirc; = 0.7 (females) in Potsdam), cereals less (lambdacirc; = 0.53 (males) and lambdacirc; = 0.4 (females) in Heidelberg, and lambdacirc; = 0.53 (males) and lambdacirc; = 0.44 (females) in Potsdam), and that the assessment of meat (lambdacirc; = 0.72 (males) and

  7. Venting of carbon dioxide-rich fluid and hydrate formation in mid-okinawa trough backarc basin.

    PubMed

    Sakai, H; Gamo, T; Kim, E S; Tsutsumi, M; Tanaka, T; Ishibashi, J; Wakita, H; Yamano, M; Oomori, T

    1990-06-01

    Carbon dioxide-rich fluid bubbles, containing approximately 86 percent CO(2), 3 percent H(2)S, and 11 percent residual gas (CH(4) + H(2)), were observed to emerge from the sea floor at 1335- to 1550-m depth in the JADE hydrothermal field, mid-Okinawa Trough. Upon contact with seawater at 3.8 degrees C, gas hydrate immediately formed on the surface of the bubbles and these hydrates coalesced to form pipes standing on the sediments. Chemical composition and carbon, sulfur, and helium isotopic ratios indicate that the CO(2)-rich fluid was derived from the same magmatic source as dissolved gases in 320 degrees C hydrothermal solution emitted from a nearby black smoker chimney. The CO(2)-rich fluid phase may be separated by subsurface boiling of hydrothermal solutions or by leaching of CO(2)-rich fluid inclusion during posteruption interaction between pore water and volcanogenic sediments.

  8. A new genus and species of octocoral with aragonite calcium-carbonate skeleton (Octocorallia, Helioporacea) from Okinawa, Japan

    PubMed Central

    Miyazaki, Yu; Reimer, James Davis

    2015-01-01

    Abstract A new genus and species of octocoral with a calcium-carbonate skeleton, Nanipora kamurai sp. n., is described from a shallow coral reef in Okinawa, Japan. Contrary to most octocorals, the skeleton is composed of crystalline aragonite as in blue coral Heliopora. The results of molecular phylogenetic analyses of sequences of mtMutS, COI, and ITS1-5.8s-ITS2-28S region suggest Nanipora gen. n. specimens should be included in order Helioporacea. Based on morphological results compared with other Helioporacea including the genus Epiphaxum (family Lithotelestidae), we establish the new genus Nanipora within Lithotelestidae. This is the first time that a close molecular phylogenetic relationship between Heliopora and a related genus within Helioporacea has been revealed. PMID:26257549

  9. A new species of the genus Tegastes (Copepoda: Harpacticoida: Tegastidae) from hydrothermal vents in the Okinawa Trough.

    PubMed

    Back, Jinwook; Huys, Rony; Lee, Wonchoel

    2010-08-01

    We describe a new species, Tegastes okinawaensis, from 583-711 meter-deep hydrothermal vents in the Okinawa Trough, Japan. This species is clearly distinguishable from its congeners by four combined characters, namely 1) the last three abdominal somites are depressed inwardly towards the body, 2) there is sexual dimorphism in the number of setae of P3 and P4, 3) the male antennule is 9-segmented, with the 7th segment formed by incomplete fusion of two segments, and 4) the caudal rami are small with a distorted quadrangular shape. Additionally, the species is easily distinguishable from its congeners by the distal endopodal segment of P4, which is armed with six setae - this character has never been reported in previous descriptions of congeners. This report is the first of a species in the genus Tegastes living at ocean depths of greater than 580 m in the northwestern Pacific.

  10. A new species of the palaemonid shrimp genus Palaemonella Dana, 1852 (Crustacea: Decapoda: Caridea) from Okinawa Island, Ryukyu Islands, Japan.

    PubMed

    Komai, Tomoyuki; Yamada, Yusuke

    2015-06-03

    The palaemonid shrimp genus Palaemonella Dana, 1852 is currently represented by 21 formally described species worldwide, of which 17 species are known from the Indo-West Pacific. In this study, a new species, P. okunoi, is described and illustrated on the basis of two ovigerous female specimens collected from coastal waters in Okinawa Island, Ryukyu Islands, Japan, at depths of 5-30 m. The new species closely resembles P. hachijo Okuno, 1999, but the shorter rostrum, more anteriorly located postrostral teeth on the carapace, the presence of a pair of submedian teeth on the fourth thoracic sternite and the less slender pereopods distinguish P. okunoi n. sp. from P. hachijo. The discovery of the present new species raises the number of Japanese species of Palaemonella to eight. An updated key to the Indo-West Pacific species of the genus is presented.

  11. A new genus and species of octocoral with aragonite calcium-carbonate skeleton (Octocorallia, Helioporacea) from Okinawa, Japan.

    PubMed

    Miyazaki, Yu; Reimer, James Davis

    2015-01-01

    A new genus and species of octocoral with a calcium-carbonate skeleton, Naniporakamurai sp. n., is described from a shallow coral reef in Okinawa, Japan. Contrary to most octocorals, the skeleton is composed of crystalline aragonite as in blue coral Heliopora. The results of molecular phylogenetic analyses of sequences of mtMutS, COI, and ITS1-5.8s-ITS2-28S region suggest Nanipora gen. n. specimens should be included in order Helioporacea. Based on morphological results compared with other Helioporacea including the genus Epiphaxum (family Lithotelestidae), we establish the new genus Nanipora within Lithotelestidae. This is the first time that a close molecular phylogenetic relationship between Heliopora and a related genus within Helioporacea has been revealed.

  12. Sesquiterpene Hydroquinones with Protein Tyrosine Phosphatase 1B Inhibitory Activities from a Dysidea sp. Marine Sponge Collected in Okinawa.

    PubMed

    Abdjul, Delfly B; Yamazaki, Hiroyuki; Takahashi, Ohgi; Kirikoshi, Ryota; Ukai, Kazuyo; Namikoshi, Michio

    2016-07-22

    Three new sesquiterpene hydroquinones, avapyran (1), 17-O-acetylavarol (2), and 17-O-acetylneoavarol (3), were isolated from a Dysidea sp. marine sponge collected in Okinawa together with five known congeners: avarol (4), neoavarol (5), 20-O-acetylavarol (6), 20-O-acetylneoavarol (7), and 3'-aminoavarone (8). The structures of 1-3 were assigned on the basis of their spectroscopic data. Compounds 1-3 inhibited the activity of protein tyrosine phosphatase 1B with IC50 values of 11, 9.5, and 6.5 μM, respectively, while known compounds 4-8 gave IC50 values of 12, >32, 10, 8.6, and 18 μM, respectively. In a preliminary investigation on structure-activity relationships, six ester and methoxy derivatives (9-14) were prepared from 4 and 5.

  13. Screening results of anaemia among infants in a village in Okinawa, Japan: a cross-sectional study.

    PubMed

    Quek, K F; Hokama, T; Yogi, C

    2006-01-01

    The aim of this study is to highlight the baseline characteristics of the results of a screening test for anaemia among infants in a village in Okinawa, Japan. The groups were classified into two; infants with and without anaemia. A total of 201 infants were screened at 3-4 months, 9-10 months and 18 months. The study showed that gestational age and BMI were predictive of anaemia at 3-4 months of age. At 9-10 months, types of feeding and weight ratio were the only factors that were found to be significantly predictive of anaemia. However, no factor was found to be predictive of anaemia at 18 months. Anaemia cases were found to occur at 3-4 months and 9-10 months. Most of the anaemia cases have successfully undergone treatment.

  14. Epstein-Barr virus (EBV)-related oral squamous cell carcinoma in Okinawa, a subtropical island, in southern Japan--simultaneously infected with human papillomavirus (HPV).

    PubMed

    Higa, Mayumi; Kinjo, Takao; Kamiyama, Kazuya; Chinen, Katsuni; Iwamasa, Teruo; Arasaki, Akira; Sunakawa, Hajime

    2003-06-01

    Up to now, many authors have reported on the EBV infection and its carcinogenic importance in undifferentiated nasopharyngeal carcinoma (WHO classification, type III), but the infection of the virus in well differentiated oral squamous cell carcinoma has not been well described. We introduce the EBV-related well differentiated oral squamous cell carcinomas in Okinawa, a subtropical island in the southernmost part of Japan. This study aimed to clarify the pathogenesis of this malignancy in this area by carrying out analysis of the histology and the Epstein-Barr (EBV) and human papillomavirus (HPV) infection. In the Department of Oral Surgery, Ryukyu University Hospital Okinawa, 188 cases of oral malignant tumours were encountered from 1996 to 2000. The histopathological examination and the sequence analysis of LMP-1 carboxy terminal region and EBNA2 region of EBV were carried out, as were the analysis of virus subtypes, A and B, BamHI-F and f, and C and D. Additionally, HPV infection in the squamous cell carcinomas were demonstrated using E6 and E7 region primer sets by PCR method. In Okinawa, 94% (177/188) of the cases were squamous cell carcinomas. A surprisingly large number of EBV (72%) and HPV (78%) infections in the oral squamous cell carcinomas were demonstrated. EBV type B virus infection was found in 36% of EBV-related oral squamous cell carcinoma in Okinawa, but in only 2-5% of the mainland cases. In both regions the incidence of the BamHI- f variant infection was very low. The infected virus in 79 out of 80 (39 Okinawan and 41 mainland) cases was BamHI- F type. In Okinawa, the numbers of C and D variants were almost equal, whereas in the mainland the D variant was rare. Further, a 30 bp deletion in LMP-1 gene was frequently demonstrated in Okinawan and mainland cases of type A virus, but not in type B virus. Lastly, single nucleotide mutations in EBNA2 region of type A virus when compared with B95-8 strain were demonstrated in Okinawan cases. The

  15. Seismic observed structure of Natsushima 86-2 knoll in Iheya small-ridges of mid-Okinawa Trough, Japan

    NASA Astrophysics Data System (ADS)

    Ikegami, Fumihiko; Tsuji, Takeshi; Kumagai, Hidenori; Takai, Ken

    2013-04-01

    Iheya small ridges are the group of the ENE-WSW elongated rod-shaped knolls at the central axis of mid-Okinawa trough back-arc extensional basin. The basin has been actively stretching more than 1000 km long at 250 km west of the convergent boundary between Philippine oceanic lithosphere and Eurasian continental counterpart since ~2 Ma (Hsu et al., 2001). Natsushima 86-2 knoll is the westernmost one of the Iheya small ridges which height is 600 m from the 1600 m depth seafloor. Multiple hydrothermal sites have been reported for these 25 years in the mid-Okinawa Trough region while previously well-studied Calyptogena site (Tanaka et al., 1989; Gamo et al., 1991) is just at the northeastern extension of the knoll. Five profiles of single-channel seismic reflection survey were obtained in Natsushima 86-2 knoll during YK-12-16 cruise in order to find structure controlling hydrothermal activity. Every profile makes the cross-section of the knoll. The source of the reflection was 150 cubic inches G-I gun with 10 seconds interval. As a result of the interpretation for seismic profiles, it is fair to conclude that the knoll has possible volcanic origin and relatively new structure. Natsushima 86-2 knoll is positioned on the normal faulted stratified deposits which are dipping from the both sides of the knoll. The surface of the knoll shows mostly low amplitude reflection which can be interpreted as pumices or other high porosity materials which is consistent with the past dredging retrieval by Kimura et al. (1987). Bend and fading of the stratified reflection approximately 100 m beneath the Calyptogena site indicates shallow intrusion of magmatic body has responsible with the formation of the hydrothermal site.

  16. Petrology and Geochemistry of Hydrothermally Altered Volcanic Rocks in the Iheya North Hydrothermal Field, Middle Okinawa Trough

    NASA Astrophysics Data System (ADS)

    Yamasaki, T.

    2015-12-01

    The Iheya North hydrothermal field is located in the middle Okinawa Trough, a young and actively spreading back-arc basin extending behind the Ryukyu arc-trench system in the southeastern margin of the East China Sea. In this hydrothermal field, two scientific drilling expeditions (IODP Exp 331 and SIP CK14-04) were conducted using a deep-sea drilling vessel "Chikyu," and samples from a total of 27 holes were taken. Through these expeditions, Kuroko-type volcanogenic massive sulfide deposits (VMS), hydrothermally altered volcanic rocks, and pumiceous and pelagic sediments were recovered. The recovered core provided important information about the relationship between hydrothermal activity, alteration, and ore mineralization. Whole-rock major element composition and trace element (TE) patterns of pumices were very similar to those of rhyolites in the middle Okinawa Trough (RMO). However, pumices were relatively enriched in chalcophile elements Sr and Nb, which suggest incipient mineralization. Volcanic rock generally demonstrated strong silicification and was greenish pale gray in color. Regardless of severe alteration, some rock displayed major element composition broadly similar to the RMO. Alteration was evidenced by an increase in the content of SiO2 and MgO, and decrease in Al2O3, Na2O, and K2O content. The most striking geochemical feature of altered volcanic rock was the discordance between texture and the degree of modification of TEs. Some samples showed decussate texture occupied by petal-like quartz with severe silicification, but no prominent disturbance of concentration and patterns of TEs were observed. In contrast, samples with well-preserved igneous porphyritic texture showed very low TE content and modification of TE patterns. These results suggest that the modification of texture and composition of TEs, as well as silicification, do not occur by a uniform process, but several processes. This may reflect the differences in temperature and the

  17. Springtime variations of organic and inorganic constituents in submicron aerosols (PM1.0) from Cape Hedo, Okinawa

    NASA Astrophysics Data System (ADS)

    Kunwar, Bhagawati; Torii, K.; Zhu, Chunmao; Fu, Pingqing; Kawamura, Kimitaka

    2016-04-01

    During the spring season with enhanced Asian outflow, we collected submicron aerosol (PM1.0) samples at Cape Hedo, Okinawa Island in the western North Pacific Rim. We analyzed the filter samples for diacids, oxoacids, pyruvic acid, α-dicarbonyls and fatty acids to better understand the sources and atmospheric processes in the outflow regions of Asian pollutants. Molecular distributions of diacids show a predominance of oxalic acid (C2) followed by malonic (C3) and succinic (C4) acids. Total diacids strongly correlated with secondary source tracers such as SO42- (r = 0.87), NH4+ (0.90) and methanesulfonate (MSA-) (0.84), suggesting that diacids are secondarily formed from their precursor compounds. We also found good correlations among C2, organic carbon (OC) and elemental carbon (EC) in the Okinawa aerosols, suggesting that diacids are mainly derived from anthropogenic sources. However, a weak correlation of diacids with levoglucosan, a biomass burning tracer, suggests that biomass buring is not the main source of diacids, rather diacids are secondarily formed by photochemical oxidation of organic precursors derived from fossil fuel combustion. We found a strong correlation (r = 0.98) between inorganic nitrogen (NO3-N + NH4-N) and total nitrogen (TN), to which organic nitrogen (ON) contributed 23%. Fatty acids were characterized by even carbon number predominance, suggesting that they are derived from biogenic sources. The higher abundances of short chain fatty acids (C20) further suggest that fatty acids are largely derived from marine phytoplankton during spring bloom.

  18. Spatial and temporal variation in the soil CO2 efflux in a subtropical broadleaved forest in Okinawa, Japan

    NASA Astrophysics Data System (ADS)

    Matsumoto, Kazuho; Terasawa, Kei; Taniguchi, Shingo; Takashima, Atsushi; Katayama, Ayumi; Ohashi, Mizue

    2016-04-01

    Soil CO2 efflux (Rs) is a major component of the carbon emissions from terrestrial ecosystems. The spatiotemporal variation in Rs and its dependency on biotic and abiotic factors have been clarified in various ecosystems. It is thought that subtropical ecosystem RS values are slightly higher than those of temperate ecosystems, but much smaller than those of tropical ecosystems (Bond-Lamberty & Thomson, 2010), but compared with temperate and tropical ecosystems there are limited relevant data. This study examined spatial (within stand-scale) and temporal (hourly to seasonal) variation in Rs in a subtropical evergreen broad-leaved forest on Okinawa Island, Japan. We measured Rs using a closed dynamic chamber at 60 locations within a 0.15-ha plot once a month in 2013 and 2014. In addition, Rs was measured continuously using automated chambers at two locations within the same plot in 2015. The annual average Rs value (5.5 μmol m-2 s-1) obtained from the monthly manual measurements was comparable with values reported for tropical rainforests and larger than those for temperate forests. At our site, Rs showed clear seasonal variation depending on soil temperature, unlike in tropical rainforests, which lack seasonality. The spatial variation in Rs was positively correlated with the ratio of litter cover area per unit soil area, which was larger on the ridge and smaller on the slope. We propose that the amount of litter, as a material for heterotrophic respiration, largely characterises the spatial variation in Rs at this site, with a relatively small contribution from autotrophic respiration by plant roots. The results clarify that Rs values in subtropical forests in Okinawa have characteristics between those of temperate forests (seasonality) and tropical rainforests (large Rs).

  19. Dietary flavonoid intake and colorectal cancer risk in the European prospective investigation into cancer and nutrition (EPIC) cohort.

    PubMed

    Zamora-Ros, Raul; Barupal, Dinesh K; Rothwell, Joseph A; Jenab, Mazda; Fedirko, Veronika; Romieu, Isabelle; Aleksandrova, Krasimira; Overvad, Kim; Kyrø, Cecilie; Tjønneland, Anne; Affret, Aurélie; His, Mathilde; Boutron-Ruault, Marie-Christine; Katzke, Verena; Kühn, Tilman; Boeing, Heiner; Trichopoulou, Antonia; Naska, Androniki; Kritikou, Maria; Saieva, Calogero; Agnoli, Claudia; Santucci de Magistris, Maria; Tumino, Rosario; Fasanelli, Francesca; Weiderpass, Elisabete; Skeie, Guri; Merino, Susana; Jakszyn, Paula; Sánchez, Maria-José; Dorronsoro, Miren; Navarro, Carmen; Ardanaz, Eva; Sonestedt, Emily; Ericson, Ulrika; Maria Nilsson, Lena; Bodén, Stina; Bueno-de-Mesquita, H B As; Peeters, Petra H; Perez-Cornago, Aurora; Wareham, Nicholas J; Khaw, Kay-Thee; Freisling, Heinz; Cross, Amanda J; Riboli, Elio; Scalbert, Augustin

    2017-04-15

    Flavonoids have been shown to inhibit colon cancer cell proliferation in vitro and protect against colorectal carcinogenesis in animal models. However, epidemiological evidence on the potential role of flavonoid intake in colorectal cancer (CRC) development remains sparse and inconsistent. We evaluated the association between dietary intakes of total flavonoids and their subclasses and risk of development of CRC, within the European Prospective Investigation into Cancer and Nutrition (EPIC) study. A cohort of 477,312 adult men and women were recruited in 10 European countries. At baseline, dietary intakes of total flavonoids and individual subclasses were estimated using centre-specific validated dietary questionnaires and composition data from the Phenol-Explorer database. During an average of 11 years of follow-up, 4,517 new cases of primary CRC were identified, of which 2,869 were colon (proximal = 1,298 and distal = 1,266) and 1,648 rectal tumours. No association was found between total flavonoid intake and the risk of overall CRC (HR for comparison of extreme quintiles 1.05, 95% CI 0.93-1.18; p-trend = 0.58) or any CRC subtype. No association was also observed with any intake of individual flavonoid subclasses. Similar results were observed for flavonoid intake expressed as glycosides or aglycone equivalents. Intake of total flavonoids and flavonoid subclasses, as estimated from dietary questionnaires, did not show any association with risk of CRC development.

  20. Pre-treatment SNOT-22 Score Predicts Response to Endoscopic Polypectomy in Clinic (EPIC) Our experience in 30 adults.

    PubMed

    Caulley, Lisa; Lasso, Andrea; Rudmik, Luke; Kilty, Shaun J

    2016-01-23

    Endoscopic polypectomy in clinic (EPIC) has demonstrated substantial short-term improvement in patient reported quality of life measures and a pilot economic analysis of EPIC confirmed its cost-effectiveness in comparison to endoscopic sinus surgery. The purpose of this study was to evaluate if pre-treatment Sino Nasal Outcome Tests-22 (SNOT-22) score predicts response to EPIC treatment in parallel to the results found for endoscopic sinus surgery. Depending on the baseline SNOT-22 group the probability of achieving minimal clinically important difference was 75-100% post-EPIC. The relative improvement in quality of life on average was 62% with 90% realising a minimal clinically important difference in their SNOT-22 score. These results are comparable to what has been found for endoscopic sinus surgery. The results of this study reflect the published results of the effect of endoscopic sinus surgery on SNOT-22 scores 6 months post-intervention which themselves have been shown to predict SNOT-22 scores at 18 months post-endoscopic sinus surgery. In select patients with chronic rhinosinusitis with nasal polyps the EPIC procedure may provide SNOT-22 score improvements similar to those seen with patients who undergo endoscopic sinus surgery This article is protected by copyright. All rights reserved.

  1. A new solitary free-living species of the genus Sphenopus (Cnidaria, Anthozoa, Zoantharia, Sphenopidae) from Okinawa-jima Island, Japan

    PubMed Central

    Fujii, Takuma; Reimer, James Davis

    2016-01-01

    Abstract A new species of free-living solitary zoantharian is described from Okinawa, Japan. Sphenopus exilis sp. n. occurs on silty seafloors in Kin Bay and Oura Bay on the east coast of Okinawa-jima Island. Sphenopus exilis sp. n. is easily distinguished from other Sphenopus species by its small polyp size and slender shape, although there were relatively few differences between Sphenopus exilis sp. n. and Sphenopus marsupialis in the molecular phylogenetic analyses. Currently, very little is known about the ecology and diversity of Sphenopus species. Thus, reviewing each species carefully via combined morphological and molecular analyses by using newly obtained specimens from type localities is required to clearly understand and distinguish the species within the genus Sphenopus. PMID:27551219

  2. A new solitary free-living species of the genus Sphenopus (Cnidaria, Anthozoa, Zoantharia, Sphenopidae) from Okinawa-jima Island, Japan.

    PubMed

    Fujii, Takuma; Reimer, James Davis

    2016-01-01

    A new species of free-living solitary zoantharian is described from Okinawa, Japan. Sphenopus exilis sp. n. occurs on silty seafloors in Kin Bay and Oura Bay on the east coast of Okinawa-jima Island. Sphenopus exilis sp. n. is easily distinguished from other Sphenopus species by its small polyp size and slender shape, although there were relatively few differences between Sphenopus exilis sp. n. and Sphenopus marsupialis in the molecular phylogenetic analyses. Currently, very little is known about the ecology and diversity of Sphenopus species. Thus, reviewing each species carefully via combined morphological and molecular analyses by using newly obtained specimens from type localities is required to clearly understand and distinguish the species within the genus Sphenopus.

  3. Probathylepadidae, a new family of Scalpelliformes (Thoracica: Cirripedia: Crustacea), for Probathylepas faxian gen. nov., sp. nov., from a hydrothermal vent in the Okinawa Trough.

    PubMed

    Ren, Xian-Qiu; Sha, Zhong-Li

    2015-10-21

    A new pedunculate barnacle, Probathylepas faxian gen. and sp. nov., is described from a hydrothermal vent in the Okinawa Trough. A new scalpelliform family, Probathylepadidae, is also proposed for the new genus and species. Probathylepadidae differs from all other five families of the order Scalpelliformes by the capitulum bearing eight primal plates and two whorls of imbricating supplementary plates, and the peduncle being without scales. The relationships between the species of the new family and sessile barnacles are also discussed.

  4. Species-specific responses of corals to bleaching events on anthropogenically turbid reefs on Okinawa Island, Japan, over a 15-year period (1995-2009).

    PubMed

    Hongo, Chuki; Yamano, Hiroya

    2013-01-01

    Coral bleaching, triggered by elevated sea-surface temperatures (SSTs) has caused a decline in coral cover and changes in the abundances of corals on reefs worldwide. Coral decline can be exacerbated by the effects of local stressors like turbidity, yet some reefs with a natural history of turbidity can support healthy and resilient coral communities. However, little is known about responses of coral communities to bleaching events on anthropogenically turbid reefs as a result of recent (post World War II) terrestrial runoff. Analysis of region-scale coral cover and species abundance at 17-20 sites on the turbid reefs of Okinawa Island (total of 79 species, 30 genera, and 13 families) from 1995 to 2009 indicates that coral cover decreased drastically, from 24.4% to 7.5% (1.1%/year), subsequent to bleaching events in 1998 and 2001. This dramatic decrease in coral cover corresponded to the demise of Acropora species (e.g., A. digitifera) by 2009, when Acropora had mostly disappeared from turbid reefs on Okinawa Island. In contrast, Merulinidae species (e.g., Dipsastraea pallida/speciosa/favus) and Porites species (e.g., P. lutea/australiensis), which are characterized by tolerance to thermal stress, survived on turbid reefs of Okinawa Island throughout the period. Our results suggest that high turbidity, influenced by recent terrestrial runoff, could have caused a reduction in resilience of Acropora species to severe thermal stress events, because the corals could not have adapted to a relatively recent decline in water quality. The coral reef ecosystems of Okinawa Island will be severely impoverished if Acropora species fail to recover.

  5. Characterization of patients with aggressive adult T-cell leukemia-lymphoma in Okinawa, Japan: a retrospective analysis of a large cohort.

    PubMed

    Nishi, Yukiko; Fukushima, Takuya; Nomura, Shogo; Tomoyose, Takeaki; Nakachi, Sawako; Morichika, Kazuho; Tedokon, Iori; Tamaki, Keita; Shimabukuro, Natsuki; Taira, Naoya; Miyagi, Takashi; Karimata, Kaori; Ohama, Masayo; Yamanoha, Atsushi; Tamaki, Kazumitsu; Hayashi, Masaki; Arakaki, Hitoshi; Uchihara, Jun-Nosuke; Ohshiro, Kazuiku; Asakura, Yoshitaka; Kuba-Miyara, Megumi; Karube, Kennosuke; Masuzaki, Hiroaki

    2016-10-01

    Okinawa Prefecture, located in the subtropics, is an area of endemic adult T-cell leukemia-lymphoma (ATL) in Japan. We retrospectively analyzed 659 patients with aggressive ATL in seven institutions in Okinawa between 2002 and 2011. The median patient age was 68 years. More patients were aged ≥90 years (2.6 %), in this study, than in a nationwide survey (<1 %). The median survival time (MST) of the entire cohort was 6.5 months. Of the 217 patients who had a clinical status similar to that stated in the eligibility criteria of JCOG9801 (a randomized phase III study comparing VCAP-AMP-VECP with CHOP-14), 147 who received the CHOP regimen had a poorer MST than those in the CHOP-14 arm of JCOG9801 (8 vs 11 months). The prevalence of strongyloidiasis in the ATL patients was much higher (12.4 %) than in the historical cohort who visited the University of the Ryukyus Hospital (3.4 %). Furthermore, strongyloidiasis may be associated with ATL-related deaths. These findings suggest that, compared with other areas in Japan, in Okinawa, the proportion of patients aged ≥90 years with clinical features of aggressive ATL is higher, outcomes are poorer, and the disease is associated with a higher prevalence of strongyloidiasis.

  6. Developing Exon-Primed Intron-Crossing (EPIC) markers for population genetic studies in three Aedes disease vectors.

    PubMed

    White, Vanessa Linley; Endersby, Nancy Margaret; Chan, Janice; Hoffmann, Ary Anthony; Weeks, Andrew Raymond

    2015-03-01

    Aedes aegypti, Aedes notoscriptus, and Aedes albopictus are important vectors of many arboviruses implicated in human disease such as dengue fever. Genetic markers applied across vector species can provide important information on population structure, gene flow, insecticide resistance, and taxonomy, however, robust microsatellite markers have proven difficult to develop in these species and mosquitoes generally. Here we consider the utility and transferability of 15 Ribosome protein (Rp) Exon-Primed Intron-Crossing (EPIC) markers for population genetic studies in these 3 Aedes species. Rp EPIC markers designed for Ae. aegypti also successfully amplified populations of the sister species, Ae. albopictus, as well as the distantly related species, Ae. notoscriptus. High SNP and good indel diversity in sequenced alleles plus support for amplification of the same regions across populations and species were additional benefits of these markers. These findings point to the general value of EPIC markers in mosquito population studies.

  7. VizieR Online Data Catalog: K2 EPIC stellar properties for 138600 targets (Huber+, 2016)

    NASA Astrophysics Data System (ADS)

    Huber, D.; Bryson, S. T.; Haas, M. R.; Barclay, T.; Barentsen, G.; Howell, S. B.; Sharma, S.; Stello, D.; Thompson, S. E.

    2016-06-01

    The K2 Mission uses the Kepler spacecraft to obtain high-precision photometry over ~80 day campaigns in the ecliptic plane. The Ecliptic Plane Input Catalog (EPIC) provides coordinates, photometry, and kinematics based on a federation of all-sky catalogs to support target selection and target management for the K2 mission. We describe the construction of the EPIC, as well as modifications and shortcomings of the catalog. Kepler magnitudes (Kp) are shown to be accurate to ~0.1mag for the Kepler field, and the EPIC is typically complete to Kp~17 (Kp~19 for campaigns covered by Sloan Digital Sky Survey). We furthermore classify 138600 targets in Campaigns 1-8 (~88% of the full target sample) using colors, proper motions, spectroscopy, parallaxes, and galactic population synthesis models, with typical uncertainties for G-type stars of ~3% in Teff, ~0.3dex in logg~40% in radius, ~10% in mass, and ~40% in distance. Our results show that stars targeted by K2 are dominated by K-M dwarfs (~41% of all selected targets), F-G dwarfs (~36%), and K giants (~21%), consistent with key K2 science programs to search for transiting exoplanets and galactic archeology studies using oscillating red giants. However, we find significant variation of the fraction of cool dwarfs with galactic latitude, indicating a target selection bias due to interstellar reddening and increased contamination by giant stars near the galactic plane. We discuss possible systematic errors in the derived stellar properties, and differences with published classifications for K2 exoplanet host stars. (1 data file).

  8. Implementation of Epic Beaker Clinical Pathology at an academic medical center

    PubMed Central

    Krasowski, Matthew D.; Wilford, Joseph D.; Howard, Wanita; Dane, Susan K.; Davis, Scott R.; Karandikar, Nitin J.; Blau, John L.; Ford, Bradley A.

    2016-01-01

    Background: Epic Beaker Clinical Pathology (CP) is a relatively new laboratory information system (LIS) operating within the Epic suite of software applications. To date, there have not been any publications describing implementation of Beaker CP. In this report, we describe our experience in implementing Beaker CP version 2012 at a state academic medical center with a go-live of August 2014 and a subsequent upgrade to Beaker version 2014 in May 2015. The implementation of Beaker CP was concurrent with implementations of Epic modules for revenue cycle, patient scheduling, and patient registration. Methods: Our analysis covers approximately 3 years of time (2 years preimplementation of Beaker CP and roughly 1 year after) using data summarized from pre- and post-implementation meetings, debriefings, and the closure document for the project. Results: We summarize positive aspects of, and key factors leading to, a successful implementation of Beaker CP. The early inclusion of subject matter experts in the design and validation of Beaker workflows was very helpful. Since Beaker CP does not directly interface with laboratory instrumentation, the clinical laboratories spent extensive preimplementation effort establishing middleware interfaces. Immediate challenges postimplementation included bar code scanning and nursing adaptation to Beaker CP specimen collection. The most substantial changes in laboratory workflow occurred with microbiology orders. This posed a considerable challenge with microbiology orders from the operating rooms and required intensive interventions in the weeks following go-live. In postimplementation surveys, pathology staff, informatics staff, and end-users expressed satisfaction with the new LIS. Conclusions: Beaker CP can serve as an effective LIS for an academic medical center. Careful planning and preparation aid the transition to this LIS. PMID:26955505

  9. Convection and Easterly Waves Observed in the Eastern Pacific ITCZ During EPIC2001

    NASA Technical Reports Server (NTRS)

    Petersen, Walter A.; Cifelli, Robert; Boccippio, Dennis J.; Rutledge, Steven A.; Arnold, James E. (Technical Monitor)

    2002-01-01

    During the last three weeks of September 2001, the East Pacific Investigation of Climate Processes in the Coupled Ocean-Atmosphere System (EPIC2001) intensive field campaign focused on studies of deep convection in the ITCZ-cold tongue complex over the Mexican warm-pool region (10 deg. N 95 deg. W) of the eastern Pacific Ocean. Major observational platforms deployed during this phase of EPIC2001 included two ships, the NOAA R/V Ronald H. Brown and the NSF R/V Horizon, and two research aircraft including a NOAA P-3 and the NCAR C-130. This study utilizes new C-band Doppler radar and sounding observations collected aboard the R/V Ronald Brown to describe the 4-D structure of ITCZ convection as a function of the environmental forcing and phase of 3-5 day easterly wave passages. Three distinct easterly wave passages occurred during EPIC2001. Each wave originated in the eastern Atlantic Ocean and after moving over Central America and into the eastern Pacific, were easily identified in time-height profiles of wind and thermodynamic data collected at the position of the R/V Brown. In all cases, the wave trough axes (as defined by changes in the meridional and zonal wind direction and changes in pressure altitude) exhibited relatively weak shear at low to mid-levels and tilted westward with height. The humidity profile in each wave did not exhibit as great a tilt in the vertical as the trough axes. Consistent with previous studies of westward tilting waves over the western Pacific Ocean, peaks in radar diagnosed rainfall tended to lead the passage of the surface wave trough by 0-2 days.

  10. Diurnal Cycle of Convection in the East Pacific ITCZ during EPIC-2001

    NASA Technical Reports Server (NTRS)

    Boccippio, Dennis J.; Petersen, Walter A.; Cifelli, Robert; Rutledge, Steven A.; Arnold, James O. (Technical Monitor)

    2002-01-01

    During the last three weeks of September 2001, the EPIC-2001 intensive field campaign focused on studies of deep convection in the ITCZ over the Mexican warm pool region (10N, 95W) of the East Pacific. This study focuses on the pronounced observed diurnal cycle of environmental and convective parameters within the experiment domain. Data from three primary sources are examined: the R/V Ronald H. Brown C-band weather radar, 4-hourly soundings from the Brown and the Global Atmospherics, Inc. National Lightning Detection Network (long range product). Satellite data from TRMM, GOES and OV-1 are also used. The domain boundary layer shows a robust daily evolution of moist enthalpy (as reflect by equivalent potential temperature, theta-e, or wet bulb potential temperature, theta-w), with contributions from changes in both dry and moist entropy. Peak theta-w is found after local nightfall; the average diurnal range of theta-w is approximately 1 deg C. A composite diurnal cycle of convective properties was derived from the C-band volume scans, sampled continuously through the experiment at 10 minute updates. Products derived from the volumetric data include a surface PPI, 15 and 30 dBZ echo top height, vertically integrated liquid, and 6 km (mixed phase region) reflectivity CAPPIs. For almost all products, the parameter means showed virtually no diurnal cycle. However, for the upper-level products, the parameter spectra showed a clear peak in the occurrence of deep/vigorous convection (the "tail end of the distribution") between 7-9 UTC (1-3 AM local), while overall frequency of occurrence peaked later, from 12-15 UTC (6-9 AM local). This represents a daily "outbreak" of isolated deep cells a couple of hours after sunset and subsequent growth, organization and decay through the nighttime hours. The coherence of the diurnal cycle of the convective spectrum is impressive given the wide variety of convective organization observed during the experiment, and given the modulation

  11. Enlisted Personnel Individualized Career System (EPICS) and Conventional Personnel System (CPS): Preliminary Comparison of Training and Ancillary Costs

    DTIC Science & Technology

    1983-04-01

    and CPS Economic Life Estimates (yrs.) Technological CopnetMission Life- Physical Life Life SEPICS CPS EPICS CPS EPICS CPS NSSMS 20 20 10 10 10 toJ...inflation perSyear since 1979. The convention of inflating first and discounting later is used (DoD, •" �). bb i i ’ bThe’ cost p r student was converted ...evaluation of resource manage- * ment (DoD Inst. 7041.3). Washington, DC : Author, 18 October 1972. . Department of the Navy. Economic analysis handbook

  12. ["Expanded prostate cancer index composite" (EPIC-26): Results of functional treatment in patients with localized prostate cancer].

    PubMed

    Beyer, B; Huland, H; Feick, G; Graefen, M

    2015-11-01

    The standardized collation of the quality of treatment is a subject of discussion both nationally and internationally. This article presents the work of the International Consortium for Health Outcomes Measurement (ICHOM) and the validated German translation of the expanded prostate cancer index composite (EPIC-26). This questionnaire allows a standardized interdisciplinary collation of the quality of treatment for all therapy modalities of localized prostate cancer. Use of the ICHOM standard set and the EPIC-26 achieves a possibility for comparison of each form of therapy with respect to the curative success and the effect on health and quality of life of patients.

  13. Incorporation of a PbSe Array Based Spectrograph into EPICS using LabView at the JLab FEL Facility

    SciTech Connect

    D. Hardy; S.V. Benson; Michelle D. Shinn; S. Zhang

    2005-08-21

    A real-time spectrograph with a 1Hz update rate was designed and installed at the JLab FEL facility using a Cal Sensors PbSe array and a Roper Scientific SpectraPro 300 monochrometer. This paper describes the implementation of EPICS channel access on a remote PC running LabView with modification of vendor supplied LabView VI's to allow display of FEL light spectra in real-time on a remote workstation. This allows PC based diagnostics to be used in EPICS.

  14. EPIC: A C++ Service Oriented Inter-process Messaging Framework and its Usage in the PFS Reduction Pipeline

    NASA Astrophysics Data System (ADS)

    Vidal, C.; Chabaud, P.-Y.

    2015-09-01

    We present EPIC: a C++ library for managing inter process communication in the Prime Focus Spectrograph Data Reduction Pipeline (PFS/DRP). The aim of EPIC is to provide a consistent framework for building distributed softwares that can be efficiently used in various kind of astronomical data processing pipeline. The Prime Focus Spectrograph multi-fiber system will allow more than 2000 simultaneous spectral observations of astronomical targets at the same time, leading the need of a high throughput system for processing data reduction of each observations. This framework provide a load balanced, messages and services oriented system, where nodes communicate with each other using a set of C++ APIs.

  15. Characterization of Heavy Metal Contents in the Bulk Atmospheric Aerosols Simultaneously Collected at Three Islands in Okinawa, Japan by X-ray fluorescence spectrometric method (XRF)

    NASA Astrophysics Data System (ADS)

    Oshiro, Y.; ITOH, A.; Azechi, S.; Somada, Y.; Handa, D.; Miyagi, Y.; Arakaki, T.; Tanahara, A.

    2011-12-01

    We studied heavy metal contents of atmospheric aerosols using an X-ray fluorescence spectrometric method (XRF). The XRF method enables us to analyze heavy metal contents of bulk aerosols rapidly without any chemical pretreatments. We used an energy dispersive X-ray fluorescence spectrometer that is compact and portable. We prepared several different amounts of standard reference materials (NIES No.28) of Japanese National Institute of Environmental Studies on quartz filters for calibration curves. Then, we evaluated quantitative responses of XRF method by comparing with the metal contents determined by inductively coupled plasma mass spectrometry (ICP-MS) and atomic absorption spectrometry (AAS) after acid-digestion. Good linear relationships between X-ray intensity and amount of aerosol on filter were seen in the following 10 metals; Al, K, Ti, V, Fe, Ni, Rb, Ba, Pb and As. We then used XRF method to determine heavy metal contents in authentic atmospheric aerosols collected in Okinawa islands, Japan. Okinawa islands, consisting of many small islands, are situated east of Asian continent, and its location in Asian is well suited for studying long-range transport of air pollutants. Also, in Okinawa islands, maritime air mass prevails during summer, while Asian continental air mass dominates during fall, winter, and spring. The maritime air mass data can be seen as background clean air and can be compared with continental air mass which has been affected by anthropogenic activities such as industries and automobiles. Therefore, Okinawa region is suitable area for studying impacts of air pollutants from East Asia. We simultaneously collected bulk aerosol samples by using identical high-volume air samplers at 3 islands; Cape Hedo Atmospheric Aerosol Monitoring Station (CHAAMS, Okinawa island), Kume island (ca. 160 km south-west of CHAAMS), and Minami-Daitou island (ca. 320 km south-east of CHAAMS). We report and discuss spatial and temporal distribution of heavy metals

  16. Intraspecific variations in carbon-isotope and oxygen-isotope compositions of a brachiopod Basiliola lucida collected off Okinawa-jima, southwestern Japan

    NASA Astrophysics Data System (ADS)

    Takayanagi, Hideko; Asami, Ryuji; Abe, Osamu; Miyajima, Toshihiro; Kitagawa, Hiroyuki; Sasaki, Keiichi; Iryu, Yasufumi

    2013-08-01

    This study presents intraspecific variations in carbon-isotope (δ13C) and oxygen-isotope (δ18O) compositions of nine specimens of a subtropical brachiopod, Basiliola lucida, collected west of Okinawa-jima, Ryukyu Islands, southwestern Japan. The δ13C values of samples collected along the maximum growth axis (ontogenetic samples) from two modern and seven older (pre-1945 cal AD) shells show no seasonal changes. The modern shells, which were collected from comparable depths, have similar δ13C values that fall within the range of calcite precipitated in isotopic equilibrium with ambient seawater (equilibrium calcite) (δ13CEC values), and their mean δ13C values are ˜1.1-1.6‰ less than those from the older shells. This decrease in δ13C values is similar in magnitude to the decreases in atmospheric CO2 and the oceanic dissolved inorganic carbon at the sea surface in recent years (13C Suess effect), suggesting that the effect can even be detected at water depths of 200-300 m in the subtropical northwestern Pacific Ocean. The δ18O values fluctuate within a narrow range (0.26-0.41‰) with no seasonal changes, and they exhibit small (0.14-0.51‰) offsets from those of equilibrium calcite (δ18OEC values). A statistically significant negative linear relationship is established between seawater temperature and mean δ18O values of the nine shells, but the slope (-0.31‰/°C) is steeper than those of equilibrium calcite (-0.23‰/°C) and other calcareous organisms (-0.15‰ to -0.26‰/°C). The cross-plots of the δ13C and δ18O values suggest that the degree of the vital effect varies among individuals in this species. The δ13C and δ18O values of B. lucida are potentially useful for reconstructing the δ13C and δ18O evolution of ancient oceans, because both values show small intraspecific variations, the former is identical to the δ13CEC values, and the latter shows small within-shell variations and small, nearly constant offsets from the δ18OEC values.

  17. Molecular diversity and distribution pattern of ciliates in sediments from deep-sea hydrothermal vents in the Okinawa Trough and adjacent sea areas

    NASA Astrophysics Data System (ADS)

    Zhao, Feng; Xu, Kuidong

    2016-10-01

    In comparison with the macrobenthos and prokaryotes, patterns of diversity and distribution of microbial eukaryotes in deep-sea hydrothermal vents are poorly known. The widely used high-throughput sequencing of 18S rDNA has revealed a high diversity of microeukaryotes yielded from both living organisms and buried DNA in marine sediments. More recently, cDNA surveys have been utilized to uncover the diversity of active organisms. However, both methods have never been used to evaluate the diversity of ciliates in hydrothermal vents. By using high-throughput DNA and cDNA sequencing of 18S rDNA, we evaluated the molecular diversity of ciliates, a representative group of microbial eukaryotes, from the sediments of deep-sea hydrothermal vents in the Okinawa Trough and compared it with that of an adjacent deep-sea area about 15 km away and that of an offshore area of the Yellow Sea about 500 km away. The results of DNA sequencing showed that Spirotrichea and Oligohymenophorea were the most diverse and abundant groups in all the three habitats. The proportion of sequences of Oligohymenophorea was the highest in the hydrothermal vents whereas Spirotrichea was the most diverse group at all three habitats. Plagiopyleans were found only in the hydrothermal vents but with low diversity and abundance. By contrast, the cDNA sequencing showed that Plagiopylea was the most diverse and most abundant group in the hydrothermal vents, followed by Spirotrichea in terms of diversity and Oligohymenophorea in terms of relative abundance. A novel group of ciliates, distinctly separate from the 12 known classes, was detected in the hydrothermal vents, indicating undescribed, possibly highly divergent ciliates may inhabit this environment. Statistical analyses showed that: (i) the three habitats differed significantly from one another in terms of diversity of both the rare and the total ciliate taxa, and; (ii) the adjacent deep sea was more similar to the offshore area than to the

  18. Halarchaeum grantii sp. nov., a moderately acidophilic haloarchaeon isolated from a commercial salt sample made in Okinawa, Japan.

    PubMed

    Shimane, Yasuhiro; Minegishi, Hiroaki; Echigo, Akinobu; Kamekura, Masahiro; Itoh, Takashi; Ohkuma, Moriya; Tsubouchi, Taishi; Usui, Keiko; Maruyama, Tadashi; Usami, Ron; Hatada, Yuji

    2015-08-03

    Three moderately acidophilic, halophilic archaeal strains, MH1-243-3T, MH1-243-5 and MH1-243-6 were isolated from a commercial salt sample made from seawater in Okinawa, Japan. Cells of the three strains were pleomorphic, and stained Gram-negative. Colonies of the strains were orange-red pigmented. Strain MH1-243-3T was able to grow at 15-27 % (w/v) NaCl (optimum at 24 %), at pH 4.5-6.5 (pH 5.5) and at 35-50 °C (45 °C). Strains MH1-243-5 and MH1-243-6 grew in slightly different ranges (shown in text). The 16S rRNA gene sequences of the three strains were identical, and the closest relative was Halarchaeum salinum MH1-34-1T with 97.0 % similarities. The rpoB' gene sequences of the three strains were also identical, and the closest relative was Hla. acidiphilum JCM 16109T with 92.0 % similarities. The DNA G+C contents of MH1-243-3T, MH1-243-5 and MH1-243-6 were 65.2 mol%. The levels of DNA-DNA relatedness amongst the three strains were 84.1-99.8 %, while that between MH1-243-3T and Halarchaeum salinum MH1-34-1 T was 30.6 % and 31.6 % (reciprocally), and those between MH1-243-3T and type strains of other species in the genus Halarchaeum were 42.3-29.4 %. Based on the phenotypic, genotypic and phylogenetic analyses, it is proposed that the isolates should represent a new species of the genus Halarchaeum, for which the name Halarchaeum grantii sp. nov. is proposed. The type strain is MH1-243-3T (= JCM 19585T = KCTC 4142T) isolated from commercial sea salt produced in Okinawa, Japan. MH1-243-5 (= JCM 19586) and MH1-243-6 (= JCM 18422) are additional strains of the species.

  19. Current status of extended spectrum β-lactamase-producing Escherichia coli, Klebsiella pneumoniae and Proteus mirabilis in Okinawa prefecture, Japan.

    PubMed

    Nakama, Rika; Shingaki, Aoi; Miyazato, Hiroko; Higa, Rikako; Nagamoto, Chota; Hamamoto, Kouta; Ueda, Shuhei; Hachiman, Teruyuki; Touma, Yuki; Miyagi, Kazufumi; Kawahara, Ryuji; Toyosato, Takehiko; Hirai, Itaru

    2016-05-01

    Enterobacteriaceae producing extended spectrum β-lactamase (ESBL) are distributed worldwide. In this study, 114 ESBL-producing Enterobacteriaceae were isolated by analyzing 1672 clinical isolates of Enterobacteriaceae collected from an Okinawa prefectural hospital in Japan between June 2013 and July 2014. The overall prevalence of ESBL-producing Enterobacteriaceae was 6.8%; the prevalence of different bacterial species among the ESBL-producing isolates was as follows: 11.5% Escherichia coli (90 of 783 isolates), 6.2% Klebsiella pneumoniae (19 of 307 isolates), and 11.1% Proteus mirabilis (5 of 45 isolates). The ESBL types blaCTX-M-1, -3, -15, -2, -14, -27, and mutants of blaSHV-1 were detected. Among them, blaCTX-M-15 (33.3%), blaCTX-M-14 (27.8%) and blaCTX-M-27 (33.3%) were dominant in the E. coli isolates, whereas a blaSHV mutant which possessed four mutations (Tyr7Phe, Leu35Gln, Gly238Ser and Glu240Lys) in the amino acid sequence of SHV-1 dominated in the K. pneumoniae isolates (11 of 19, 57.9%). The pandemic E. coli ST131 clone was found to constitute 3.3% of the overall examined isolates and 62.2% of the ESBL-producing E. coli isolates. Our results suggest that the genetic combination of blaCTX-M, and blaSHV and antibiotics-resistant profile were different from that in other regions such as other areas of Japan, Asia, Europe, and North America, especially in the ESBL-producing K. pneumoniae isolates and in the E. coli B2-O25b-ST131 isolates possessing blaCTX-M-15 (40.7% of the E. coli B2-O25b-ST131 isolates). Taken together, our results indicate that the ESBL-producing Enterobacteriaceae in Okinawa, Japan, might be of a unique nature.

  20. Behavior of Particulate Mercury in the Bulk Atmospheric Aerosols Simultaneously Collected at 2 Sites in Okinawa, Japan

    NASA Astrophysics Data System (ADS)

    Miyagi, Y.; Arakaki, T.; Azechi, S.; Somada, Y.; Oshiro, Y.; Tsuhako, A.; Murayama, H.; Tanahara, A.

    2013-12-01

    Mercury is toxic to animals. Mercury is emitted to the atmosphere mainly from two sources; natural and anthropogenic sources. Natural sources include volcanic eruption, forest fire and so on. Anthropogenic sources include fossil fuel combustion, metal and cement production and so on. There are three forms of mercury in the atmosphere: gaseous elemental mercury, reactive gaseous mercury and particulate mercury. Gaseous elemental mercury is the most abundant form in the atmosphere, and has long atmospheric lifetime, ca. a few years. This study focuses on particulate mercury, which has a relatively short lifetime, ca. a few days, in the atmosphere because it reflects characteristics of nearby emission sources. Objectives of this study were to elucidate the behavior of particulate mercury in aerosols and to understand relationships between mercury and other metals and water-soluble anions. Aerosol samples were collected at two sites; Cape Hedo Atmosphere and Aerosol Monitoring Station (CHAAMS, Jan.2008-Nov.2012), northern tip of Okinawa island, and University of the Ryukyus (UR, Jan.2008-Nov.2012), central and more populated area of Okinawa island. They were collected by using identical high-volume air samplers on quartz filters. Concentrations of particulate mercury in aerosols were determined by using a MA-3000 (Nippon Instruments Corporation). The results showed that particulate Hg concentrations were mostly higher for the aerosols collected at UR site than those at CHAAMS site, suggesting locally emitted Hg. Samples collected at UR showed clear seasonal variation, the lowest in summer and the highest winter. On the other hand, the CHAAMS samples showed lower concentration in winter and higher concentration in summer, but the difference was relatively small. Both UR and CHAAMS samples had similar concentration levels in summer season. Back trajectory analysis showed that particulate Hg at CHAAMS site during summer was not from Asian continent. Since samples

  1. What is the constraint on formation of oil-starved hydrothermal systems in the sediment-rich Okinawa Trough, southwestern Japan

    NASA Astrophysics Data System (ADS)

    Yamanaka, T.; Akashi, H.; Mitsunari, T.

    2012-12-01

    Petroleum generation associated with seafloor hydrothermal systems was first identified at the Guaymas Basin, Gulf of California in 1978 (Simoneit et al., 1979). Since the first discovery, hydrothermal petroleums have been discovered at other seafloor hydrothermal fields, Escanaba Trough, Middle Valley, and the Red Sea, where thick sedimentary layer overlay the active spreading center. Simoneit (1990) suggested that hydrothermal petroleum can be occurred any hydrothermal systems as a result of interaction between hot hydrothermal fluid and organic mater in the sedimentary layer. In the middle Okinawa Trough, where typical sediment-hosted hydrothermal systems distribute, occurrence of hydrothermal petroleum has not been found. In 2010 IODP Exp. 331 had been performed, and then five sites were drilled at the Iheya North hydrothermal system. However, hydrothermal petroleum generation has not been reported even at that time. On the other hand, significant hydrothermal petroleum generation has been observed at a shallow-seafloor hydrothermal system in the Kagoshima Bay, north extension of Okinawa Trough (Yamanaka et al., 1999). It is an interesting subject why hydrothermal petroleum can not be found in the Okinawa Trough. So we considered what is the most critical constraint on occurrence of hydrothermal petroleum based on comparison with the well known hydrothermal fields occurred hydrothermal petroleum. Three major control factors for petroleum generation at seafloor hydrothermal systems are expected; (i) temperature, (ii) elapsed time, (iii) type of sediment. High temperature is essential for maturation of organic matter, but under extremely high temperature condition pyrolysis to gaseous hydrocarbon and other low-molecular weight product may be prevailed. Dissolved organic matter (DOM) and methane concentrations may reflect the temperature condition, because methane generation may continue under extreme condition but DOM, especially low-molecular weight organic acid

  2. Phytosterol plasma concentrations and coronary heart disease in the prospective Spanish EPIC cohort

    PubMed Central

    Escurriol, Verónica; Cofán, Montserrat; Moreno-Iribas, Concepción; Larrañaga, Nerea; Martínez, Carmen; Navarro, Carmen; Rodríguez, Laudina; González, Carlos A.; Corella, Dolores; Ros, Emilio

    2010-01-01

    Phytosterol intake with natural foods, a measure of healthy dietary choices, increases plasma levels, but increased plasma phytosterols are believed to be a coronary heart disease (CHD) risk factor. To address this paradox, we evaluated baseline risk factors, phytosterol intake, and plasma noncholesterol sterol levels in participants of a case control study nested within the European Prospective Investigation into Cancer and Nutrition (EPIC) Spanish cohort who developed CHD (n = 299) and matched controls (n = 584) who remained free of CHD after a 10 year follow-up. Sitosterol-to-cholesterol ratios increased across tertiles of phytosterol intake (P = 0.026). HDL-cholesterol level increased, and adiposity measures, cholesterol/HDL ratios, and levels of glucose, triglycerides, and lathosterol, a cholesterol synthesis marker, decreased across plasma sitosterol tertiles (P < 0.02; all). Compared with controls, cases had nonsignificantly lower median levels of phytosterol intake and plasma sitosterol. The multivariable-adjusted odds ratio for CHD across the lowest to highest plasma sitosterol tertile was 0.59 (95% confidence interval, 0.36–0.97). Associations were weaker for plasma campesterol. The apolipoprotein E genotype was unrelated to CHD risk or plasma phytosterols. The data suggest that plasma sitosterol levels are associated with a lower CHD risk while being markers of a lower cardiometabolic risk in the EPIC-Spain cohort, a population with a high phytosterol intake. PMID:19786566

  3. Mode Identification in a Pulsating Subdwarf B Star EPIC 212707862 Observed with K2

    NASA Astrophysics Data System (ADS)

    Bachulski, S.; Baran, A. S.; Jeffery, C. S.; Østensen, R. H.; Reed, M. D.; Telting, J. H.; Kuutma, T.

    2016-12-01

    We present an analysis of K2 observations of EPIC 212707862, a pulsating subdwarf B star. We detected 13 significant frequencies from an 81 day run during Campaign 6. Our goal was to find features that could help us to identify pulsation modes. We could not identify any multiplets, which would also have enabled us to precisely derive a rotation period. Based on amplitude modulation we estimated that period to be around 80 days. We found two period-spacing sequences, and successfully identified modal degrees for 11 out of 13 detected frequencies. We assigned six of them to l=1, and another five to l=2. These results will facilitate future theoretical modeling. This star brings to 19 the number of pulsating subdwarf B stars observed with K2. Radial velocities obtained to date and the spectral energy distribution are consistent with EPIC 212707862 being a single hot subdwarf. Analysis of the spectrum gives atmospheric parameters: Teff=28 298±162 K, log g[cm/s2]=5.479±0.025 and log (n(He)/n(H))=-2.752±0.069.

  4. Expression of avian infectious bronchitis virus multi-epitope based peptide EpiC in Lactococcus lactis for oral immunization of chickens.

    PubMed

    Cao, Hai-Peng; Wang, Hong-Ning; Zhang, An-Yun; Ding, Meng-Die; Liu, Si-Tong; Cheng, Han; Zhou, Ying-Shun; Li, Xin

    2012-01-01

    The avian infectious bronchitis virus (IBV) multi-epitope based peptide EpiC was found to be effective in inducing strong humoral and cellular responses against IBV. In this study, the gene EpiC was introduced into Lactococcus lactis NZ3900, and three recombinant strains expressing EpiC in intracellular and extracellular forms were constructed. SDS-PAGE and Western blot results indicated that EpiC was successfully expressed and had good immunoreactivity with chicken anti-IBV serum. Fusion of the signal pepitide gene SPusp45 and the nine-peptide LEISSTCDA encoding oligonucleotide to EpiC increased the secretion of EpiC, but reduced the total yields of EpiC. Oral immunization to specific-pathogen-free (SPF) chickens with recombinant strains induced significantly higher levels of humoral immune responses, and provided protection against lethal dose challenge by the IBV SAIBk strain. These results indicate that it is feasible to use L. lactis as an antigen delivery vehicle in developing oral vaccines against IBV infection.

  5. Oxidative Stress and Longevity in Okinawa: An Investigation of Blood Lipid Peroxidation and Tocopherol in Okinawan Centenarians

    PubMed Central

    Suzuki, Makoto; Willcox, D. Craig; Rosenbaum, Matthew W.; Willcox, Bradley J.

    2010-01-01

    Background. The Free Radical Theory of Aging mechanistically links oxidative stress to aging. Okinawa has among the world's longest-lived populations but oxidative stress in this population has not been well characterized. Methods. We compared plasma lipid peroxide (LPO) and vitamin E—plasma and intracellular tocopherol levels (total α, β, and γ), in centenarians with younger controls. Results. Both LPO and vitamin E tocopherols were lower in centenarians, with the exception of intracellular β-tocopherol, which was significantly higher in centenarians versus younger controls. There were no significant differences between age groups for tocopherol: cholesterol and tocopherol: LPO ratios. Correlations were found between α-Tocopherol and LPO in septuagenarians but not in centenarians. Conclusions. The low plasma level of LPO in Okinawan centenarians, compared to younger controls, argues for protection against oxidative stress in the centenarian population and is consistent with the predictions of the Free Radical Theory of Aging. However, the present work does not strongly support a role for vitamin E in this phenomenon. The role of intracellular β-tocopherol deserves additional study. More research is needed on the contribution of oxidative stress and antioxidants to human longevity. PMID:21490698

  6. A new sponge-inhabiting Loxosomella (Entoprocta: Loxosomatidae) from Okinawa Island, Japan, with special focus on foot structure.

    PubMed

    Iseto, Tohru; Sugiyama, Nagisa; Hirose, Euichi

    2008-11-01

    Abstract A new solitary entoproct, Loxosomella plakorticola sp. nov., was found on a sponge, Plakortis sp., on a coral reef slope on the western coast of Okinawa Island, Ryukyu Archipelago, Japan. This species has a medium-sized body (up to about 1.2 mm), slender proportion (the stalk is 0.83-1.76 times longer than the calyx), a slug-like foot with a foot gland and foot groove, and 14 to 18 tentacles. Small black pigment granules are visible only in the living stage in the calyx, stalk, and buds. This is the first report of a commensal loxosomatid from the Ryukyu Archipelago and the second species inhabiting sponges reported from Japan. Detailed morphological observations indicate that this species attaches to sponges by narrowing the foot groove; the sponge surface is pinched in the deepest part of the groove, which is free of the cuticle layer but covered by microvilli of epidermal cells. The accessory cells lining the foot groove have long been believed to be gland cells, but they are not gland cells in ultrastructure, at least in this species.

  7. Entamoeba marina n. sp.; a New Species of Entamoeba Isolated from Tidal Flat Sediment of Iriomote Island, Okinawa, Japan.

    PubMed

    Shiratori, Takashi; Ishida, Ken-Ichiro

    2016-05-01

    The genus Entamoeba includes anaerobic lobose amoebae, most of which are parasites of various vertebrates and invertebrates. We report a new Entamoeba species, E. marina n. sp. that was isolated from a sample of tidal flat sediment collected at Iriomote Island, Okinawa, Japan. Trophozoites of E. marina were 12.8-32.1 μm in length and 6.8-15.9 μm in width, whereas the cysts were 8.9-15.8 μm in diam. and contained four nuclei. The E. marina cells contained a rounded nucleus with a small centric karyosome and uniformly arranged peripheral chromatin. Although E. marina is morphologically indistinguishable from other tetranucleated cyst-forming Entamoeba species, E. marina can be distinguished from them based on the combination of molecular phylogenetic analyses using SSU rDNA gene and the difference of collection sites. Therefore, we propose E. marina as a new species of the genus Entamoeba.

  8. Effect of Okinawa Propolis on PAK1 Activity, Caenorhabditis elegans Longevity, Melanogenesis, and Growth of Cancer Cells.

    PubMed

    Taira, Nozomi; Nguyen, Binh Cao Quan; Be Tu, Pham Thi; Tawata, Shinkichi

    2016-07-13

    Propolis from different areas has been reported to inhibit oncogenic/aging kinase PAK1, which is responsible for a variety of conditions, including cancer, longevity, and melanogenesis. Here, a crude extract of Okinawa propolis (OP) was tested against PAK1 activity, Caenorhabditis elegans (C. elegans) longevity, melanogenesis, and growth of cancer cells. We found that OP blocks PAK1 and exhibits anticancer activity in the A549 cell (human lung cancer cell) line with IC50 values of 6 μg/mL and 12 μg/mL, respectively. Most interestingly, OP (1 μg/mL) significantly reduces reproduction and prolongs the lifespan of C. elegans by activating the HSP-16.2 gene, as shown in the PAK1-deficient strain. Furthermore, OP inhibits melanogenesis in a melanoma cell line (B16F10) by downregulating intracellular tyrosinase activity with an IC50 of 30 μg/mL. Our results suggest that OP demonstrated a life span extending effect, C. elegans, anticancer, and antimelanogenic effects via PAK1 inactivation; therefore, this can be a potent natural medicinal supplement against PAK1-dependent diseases.

  9. Tombs, tunnels, and terraces a cultural resources survey of a former ammunition supply point in Okinawa, Japan

    SciTech Connect

    Verhaaren, B. T.; Levenson, J. B.; Komine, G.

    2000-02-09

    U.S. forces serving at military bases on foreign soil are obligated to act as good stewards of the cultural and natural resources under their control. However, cultural resources management presents special challenges at U.S. bases in other countries where cultural properties laws differ in emphasis and detail from those in the United States and issues of land ownership and occupancy are not always clear. Where status of forces agreements (SOFAs) exist, environmental governing standards bridge the gap between U.S. and host nation cultural priorities. In Japan, the Department of Defense Japan Environmental Governing Standards (JEGS) fill this function. Under Criteria 12-4.2 and 12-4.3 of the JEGS, U.S. Forces Japan commit themselves to inventory and protect cultural properties found on the lands they control or use. Cultural properties include archaeological sites, tombs, historic buildings, and shrines. Natural monuments, such as landscape features or plant and animal species, may also be designated as cultural properties. As part of this commitment, in February 1999 a cultural resources inventory was conducted in Area 1, part of Kadena Air Base (AB), Okinawa, Japan. Area 1, the former U.S. army Ammunition Supply Point 1, is currently used primarily for training exercises and recreational paint ball.

  10. Characteristics of the cultivable bacteria from sediments associated with two deep-sea hydrothermal vents in Okinawa Trough.

    PubMed

    Sun, Qing-lei; Wang, Ming-qing; Sun, Li

    2015-12-01

    In this study, different culture-dependent methods were used to examine the cultivable heterotrophic bacteria in the sediments associated with two deep-sea hydrothermal vents (named HV1 and HV2) located at Iheya Ridge and Iheya North in Okinawa Trough. The two vents differed in morphology, with HV1 exhibiting diffuse flows while HV2 being a black smoker with a chimney-like structure. A total of 213 isolates were identified by near full-length 16S rRNA gene sequence analysis. Of these isolates, 128 were from HV1 and 85 were from HV2. The bacterial community structures were, in large parts, similar between HV1 and HV2. Nevertheless, differences between HV1 and HV2 were observed in one phylum, one class, 4 orders, 10 families, and 20 genera. Bioactivity analysis revealed that 25 isolates belonging to 9 different genera exhibited extracellular protease activities, 21 isolates from 11 genera exhibited extracellular lipase activities, and 13 isolates of 8 genera displayed antimicrobial activities. This is the first observation of a large population of bacteria with extracellular bioactivities existing in deep-sea hydrothermal vents. Taken together, the results of this study provide new insights into the characteristics of the cultivable heterotrophic bacteria in deep-sea hydrothermal ecosystems.

  11. Antioxidant and hepatoprotective actions of medicinal herb, Terminalia catappa L. from Okinawa Island and its tannin corilagin.

    PubMed

    Kinoshita, S; Inoue, Y; Nakama, S; Ichiba, T; Aniya, Y

    2007-11-01

    The antioxidant and hepatoprotective actions of Terminalia catappa L. collected from Okinawa Island were evaluated in vitro and in vivo using leaves extract and isolated antioxidants. A water extract of the leaves of T. catappa showed a strong radical scavenging action for 1,1-diphenyl-2-picrylhydrazyl and superoxide (O(2)(.-)) anion. Chebulagic acid and corilagin were isolated as the active components from T. catappa. Both antioxidants showed a strong scavenging action for O(2)(.-) and peroxyl radicals and also inhibited reactive oxygen species production from leukocytes stimulated by phorbol-12-myristate acetate. Galactosamine (GalN, 600 mg/kg, s.c.,) and lipopolysaccharide (LPS, 0.5 microg/kg, i.p.)-induced hepatotoxicity of rats as seen by an elevation of serum alanine aminotransferase, aspartate aminotransferase and glutathione S-transferase (GST) activities was significantly reduced when the herb extract or corilagin was given intraperitoneally to rats prior to GalN/LPS treatment. Increase of free radical formation and lipid peroxidation in mitochondria caused by GalN/LPS treatment were also decreased by pretreatment with the herb/corilagin. In addition, apoptotic events such as DNA fragmentation and the increase in caspase-3 activity in the liver observed with GalN/LPS treatment were prevented by the pretreatment with the herb/corilagin. These results show that the extract of T. catappa and its antioxidant, corilagin are protective against GalN/LPS-induced liver injury through suppression of oxidative stress and apoptosis.

  12. EPIC 211779126: a rare hybrid pulsating subdwarf B star richly pulsating in both pressure and gravity modes

    NASA Astrophysics Data System (ADS)

    Baran, A. S.; Reed, M. D.; Østensen, R. H.; Telting, J. H.; Jeffery, C. S.

    2017-01-01

    We present our analysis of EPIC 211779126, a pulsating subdwarf B star discovered with the Kepler spacecraft during K2 Campaign 5. We found 154 frequencies in the g-mode region as well as 29 frequencies in the p-mode region. This makes EPIC 211779126 a rare hybrid pulsator with a rich pulsation spectrum in both regions. We successfully identified modal degrees and relative radial orders of most of the g-modes using asymptotic period spacing, and modal degrees of some of the p-modes using rotational splitting. We detected trapped modes, which are a very important feature for constraining theoretical models. Our ground-based spectroscopic observations revealed no companion, therefore EPIC 211779126 is likely a single sdB star. Using p-mode multiplets, we derived a rotation period of approximately 16 days, making EPIC 211779126 the fastest rotating non-binary subdwarf B pulsator observed with Kepler. However, we do not find any resolved multiplets among the high-amplitude g-mode pulsations that correspond to the rotation rate inferred from the p-mode splittings. This may indicate that the star's core is rotating more slowly than its envelope.

  13. 1977-1978 Final Evaluation Report of Career Education (Project E.P.I.C.). Report #24.

    ERIC Educational Resources Information Center

    Wilson, Jackie

    Project EPIC (Educational Preparation for Involvement in Careers) was conducted to study the best methods and techniques of infusing career education into the curriculum in five schools with high proportion of low-income children in the Jefferson County School System (Kentucky). The project had five basic goals: (1) provide low income children…

  14. “Nitrogen Budgets for the Mississippi River Basin using the linked EPIC-CMAQ-NEWS Models”

    EPA Science Inventory

    Presentation on the results from the 3 linked models, EPIC (USDA), CMAQ and NEWS to analyze a scenario of increased corn production related to biofuels together with Clean Air Act emission reductions across the US and the resultant effect on nitrogen loading to the Gulf of Mexico...

  15. 75 FR 12230 - Black Oak Energy, L.L.C., EPIC Merchant Energy, LP, SESCO Enterprises, LLC v. PJM Interconnection...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-03-15

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF ENERGY Federal Energy Regulatory Commission Black Oak Energy, L.L.C., EPIC Merchant Energy, LP, SESCO Enterprises, LLC v... (Commission) September 17, 2009, Order Accepting Compliance filing issued in this proceeding, Black Oak...

  16. 75 FR 40815 - Black Oak Energy, LLC, EPIC Merchant Energy, LP, SESCO Enterprises, LLC v. PJM Interconnection...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-07-14

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF ENERGY Federal Energy Regulatory Commission Black Oak Energy, LLC, EPIC Merchant Energy, LP, SESCO Enterprises, LLC v... Oak Energy, LLC, et al. v. PJM Interconnection, LLC, 131 FERC ] 61,024 (2010) (April 15 Order)....

  17. Intrarectal Amifostine During External Beam Radiation Therapy for Prostate Cancer Produces Significant Improvements in Quality of Life Measured by EPIC Score

    SciTech Connect

    Simone, Nicole L.; Menard, Cynthia; Soule, Benjamin P.; Albert, Paul S.; Guion, Peter; Smith, Sharon; Godette, Denise; Crouse, Nancy S.; Sciuto, Linda C.; Cooley-Zgela, Theresa; Camphausen, Kevin; Coleman, C. Norman; Singh, Anurag K. E-mail: singan@mail.nih.gov

    2008-01-01

    Purpose: To test whether intrarectal amifostine limits symptoms of radiation proctitis, measured by using the Radiation Therapy Oncology Group (RTOG) gastrointestinal (GI) toxicity score and the Expanded Prostate Cancer Index Composite (EPIC) score. Methods and Materials: Patients with localized prostate cancer received amifostine as a rectal suspension 30-45 minutes before daily three-dimensional conformal radiation therapy. The first 18 patients received 1 g of amifostine, and the next 12 patients received 2 g. Toxicity was assessed at baseline, during treatment, and at follow-up visits by using RTOG grading and the EPIC Quality of Life (QoL) 50-item questionnaire. The Bowel Function subset of the bowel domain (EPIC-BF), which targets symptom severity, and the Bowel Bother subset of the bowel domain (EPIC-BB), which assesses QoL, were evaluated and compared with the RTOG GI toxicity score. Results: Median follow-up was 30 months (range, 18-36 months). Overall, EPIC-BF and EPIC-BB scores both tracked closely with the RTOG GI toxicity score. Seven weeks after the start of radiation therapy, the incidence of RTOG Grade 2 toxicity was 33% in the 1-g group (6/18 patients) compared with 0% (0/12 patients) in the 2-g group and trended toward statistical significance (p = 0.06). A significant difference between amifostine groups was observed using the EPIC-BF score at 7 weeks (p = 0.04). A difference in EPIC-BB scores between dose groups was evident at 7 weeks (p = 0.07) and was significant at 12 months (p = 0.04). Conclusions: Higher doses of amifostine produced significant improvements in acute and late bowel QoL (up to 1 year after therapy), measured using the EPIC score.

  18. Development and application of the EPIC model for carbon cycle, greenhouse-gas mitigation, and biofuel studies

    SciTech Connect

    Izaurralde, Roberto C.; Mcgill, William B.; Williams, J.R.

    2012-06-01

    This chapter provides a comprehensive review of the EPIC model in relation to carbon cycle, greenhouse-gas mitigation, and biofuel applications. From its original capabilities and purpose (i.e., quantify the impacts or erosion on soil productivity), the EPIC model has evolved into a comprehensive terrestrial ecosystem model for simulating with more or less process-level detail many ecosystem processes such as weather, hydrology, plant growth and development, carbon cycle (including erosion), nutrient cycling, greenhouse-gas emissions, and the most complete set of manipulations that can be implemented on a parcel of land (e.g. tillage, harvest, fertilization, irrigation, drainage, liming, burning, pesticide application). The chapter also provides details and examples of the latest efforts in model development such as the coupled carbon-nitrogen model, a microbial denitrification model with feedback to the carbon decomposition model, updates on calculation of ecosystem carbon balances, and carbon emissions from fossil fuels. The chapter has included examples of applications of the EPIC model in soil carbon sequestration, net ecosystem carbon balance, and biofuel studies. Finally, the chapter provides the reader with an update on upcoming improvements in EPIC such as the additions of modules for simulating biochar amendments, sorption of soluble C in subsoil horizons, nitrification including the release of N2O, and the formation and consumption of methane in soils. Completion of these model development activities will render an EPIC model with one of the most complete representation of biogeochemical processes and capable of simulating the dynamic feedback of soils to climate and management in terms not only of transient processes (e.g., soil water content, heterotrophic respiration, N2O emissions) but also of fundamental soil properties (e.g. soil depth, soil organic matter, soil bulk density, water limits).

  19. Observations of transits of K2 exoplanet discoveries EPIC 203371098b&c

    NASA Astrophysics Data System (ADS)

    Werner, Michael; Gorjian, Varoujan; Beichmani, Charles; Akeson, Rachel; Ciardi, Dave; Christiansen, Jessie; Crossfield, Ian; Petigura, Erik; Krick, Jessica

    2015-08-01

    We request DDT time to observe transits of two super-Neptune planets orbiting a bright G star, EPIC 203371098. Erik Petigura has brought to our attention a particularly interesting K2 discovery that consists of two sub-Saturn-sized planets (5.9 RE and 7.8 RE) orbiting EPIC-203371098, a bright G star (K = 9.2). The orbital periods of the planets are 20.9 d and 42.4 d, respectively. The planets have sizes between that of Neptune and Saturn; sizes not represented among the Solar System planets. Due to the brightness of the host star, this system is an ideal laboratory to study this new class of planets. Over the past two months, our team has conducted radial velocity (RV) follow up of EPIC-203371098 with Keck/HIRES. Our preliminary measurements suggest these planets have low densities, ~0.6 g/cc and ~0.4 g/cc, respectively. Low planet masses translate into larger atmospheric scale heights, which sets the amplitude of the features in planet transmission spectra. The apparent commensurability of their orbits suggest that this is a resonant system where transit timing variations may be particularly large. Our Spitzer observations, compared with the previous K2 first epoch observations, can provide initial evidence for TTVs and set the stage for future campaigns from Spitzer and other telescopes which will independently determine the planetary masses; they will also pin down the ephemerides of these interesting planets - including the hard to capture orbital eccentricity - for possible JWST study.It is important to carry out these observations in the upcoming apparition of this star in the October-December time frame because multiple observations are required for accurate studies of TTVs, and to prevent secular errors in timing from building up to a point where the system is hard to recover. The size of these planets and the brightness of the star shows us that we will achieve S/N>20 per transit on each planet.We will propose to observe one transit of each planet

  20. EPICS Exploration

    ERIC Educational Resources Information Center

    Anderson, Sherry

    2005-01-01

    With a satisfying "Whoompf!" the air cannon sends a tennis ball the length of the school gym. The successful launch is met with cheers from the science club members and their partners--college engineering students from a local university. This air cannon activity was one of many learning opportunities that grew out of a partnership…

  1. Stable carbon and nitrogen isotopic compositions of ambient aerosols collected from Okinawa Island in the western North Pacific Rim, an outflow region of Asian dusts and pollutants

    NASA Astrophysics Data System (ADS)

    Kunwar, Bhagawati; Kawamura, Kimitaka; Zhu, Chunmao

    2016-04-01

    Stable carbon (δ13C) and nitrogen (δ15N) isotope ratios were measured for total carbon (TC) and nitrogen (TN), respectively, in aerosol (TSP) samples collected at Cape Hedo, Okinawa, an outflow region of Asian pollutants, during 2009-2010. The averaged δ13C and δ15N ratios are -22.2‰ and +12.5‰, respectively. The δ13C values are similar in both spring (-22.5‰) and winter (-22.5‰), suggesting the similar sources and/or source regions. We found that δ13C from Okinawa aerosols are ca. 2‰ higher than those reported from Chinese megacities probably due to photochemical aging of organic aerosols. A strong correlation (r = 0.81) was found between nss-Ca and TSP, suggesting that springtime aerosols are influenced from Asian dusts. However, carbonates in the Asian dusts were titrated with acidic species such as sulfuric acid and oxalic acid during atmospheric transport although two samples suggested the presence of remaining carbonate. No correlations were found between δ13C and tracer compounds (levoglucosan, elemental carbon, oxalic acid, and Na+). During winter and spring, coal burning is significant source in China. Based on isotopic mass balance, contribution of coal burning origin particles to total aerosol carbon was estimated as ca. 97% in winter, which is probably associated with the high emissions in China. Contribution of NO3- to TN was on average 45% whereas that of NH4+ was 18%. These results suggest that vehicular exhaust is an important source of TN in Okinawa aerosols. Concentration of water-soluble organic nitrogen (WSON) is higher in summer, suggesting that WSON is more emitted from the ocean in warmer season whereas inorganic nitrogen is more emitted in winter and spring from pollution sources in the Asian continent.

  2. Comparison of drug sensitivity and genotypes of clinically isolated strains of levofloxacin-resistant Streptococcus pneumoniae obtained from Okinawa Island, the Japanese main island and Hong Kong.

    PubMed

    Sunagawa, Satoko; Fujita, Jiro; Higa, Futoshi; Tateyama, Masao; Haranaga, Shusaku; Nakasone, Isamu; Yamane, Nobuhisa; Uno, Tsukasa

    2011-08-01

    The prevalence of fluoroquinolone-resistant Streptococcus pneumoniae is increasing worldwide. In the present study, a comparison of drug sensitivity and genotypes of clinically isolated strains of levofloxacin (LVFX)-resistant S. pneumoniae obtained from Hong Kong, Okinawa Island and the Japanese main island (Honshu) was performed. MICs of quinolones (LVFX, tosufloxacin, ciprofloxacin, gatifloxacin and sitafloxacin (STFX)) and other antibiotics (penicillin G, cefcapene, cefditoren, clarithromycin and azithromycin) were determined by a microdilution broth method according to the Clinical and Laboratory Standards Institute Standards. The quinolone-resistance determining regions (QRDRs) of gyrA, gyrB, parC and parE of these strains were analyzed by PCR-based sequencing. All 40 strains tested had more than one amino-acid substitution in the QRDRs of gyrA, gyrB, parC or parE. Although there seemed to be some clonality in strains obtained from Hong Kong, there was no clonality in strains obtained from Okinawa and Japan. Strains obtained from Hong Kong, Okinawa Island and the Japanese main island were genetically different by pulsed-field gel electrophoresis analysis. The range of MIC values of STFX against isolates resistant to LVFX (MIC 4-32 mg l(-1)) was 0.12-0.5 mg l(-1), and MIC(80) values of STFX against LVFX-resistant isolates were 0.25 mg l(-1). This study suggests that LVFX-resistant S. pneumoniae is similar in all three locations and STFX is potent against LVFX-resistant S. pneumoniae with multiple mutations in QRDRs of gyrase A and topoisomerase IV.

  3. User Instructions for the Final Version of the EPIC Research Code

    DTIC Science & Technology

    1996-04-01

    IMI a.00 P. 76 Fs I lEOAM U FE 04UUU SE FORIS FCfif P.77 CARCO ORMNOB MODELP ~f" YWTA YFN cmNOmw P. 7. T14290,062 Figure 2. Material Input Data...Additional Element Input Data for Rezoning T14200a 24 NITERXAI. IN DATA LI~kRY FMR EPIC4 VUD DESCRIPTION 1 OdEC COPPE 37-30, 6007 ANNWAL160MN 4 AmAW ISIOE R7...Individual and Composite Element Options Tt42,oc 31 0 S 0 5 0 0 0 1 a 4 a a 7 a ID ID 1D 3D 2D 2D Aziwryua cuts c"- SW Plane Him -~ gD -OU DLiNSies

  4. Cultural Trauma and Christian Identity in the Late Medieval Heroic Epic, The Siege of Jerusalem.

    PubMed

    DeMarco, Patricia A

    2015-01-01

    This essay examines scenes of violence in the late medieval poem The Siege of Jerusalem in order to reveal the ways in which trauma is used as the grounds upon which Christian/Jewish difference is established. In particular, I argue that this poem serves as an example of a widespread element in Christian chivalric identity, namely the need to manage the repetitive invocation of Christ's crucifixion (ritually repeated through liturgical and poetic invocation) as a means of asserting both the bodily and psychic integrity of the Christian subject in contrast to the violently abjected figure of the Jewish body. The failure of The Siege protagonist, Wespasian, to navigate the cultural trauma of the crucifixion is contrasted to the successful management of trauma by the martial hero, Tancred, in Tasso's epic, Gerusalemme Liberata, illustrating the range of imaginative possibilities for understanding trauma in pre-modern war literature.

  5. HPC-EPIC for High Resolution Simulations of Environmental and Sustainability Assessment

    SciTech Connect

    Nichols, Jeffrey A.; Kang, Shujiang; Post, W. M.; Wang, Dali; Bandaru, Varaprasad; Manowitz, David H.; Zhang, Xuesong; Izaurralde, Roberto C.

    2011-11-01

    Multiple concerns over the impact of wide scale changes in land management have motivated comprehensive analyses of environmental sustainability of food and biofuel production. These call for high-resolution, spatial-temporal information of lands using tools that enable comprehensive analyses of natural resources for decision-making. Most agroecosystem simulation models are point models with a user interface that allows users to provide inputs and examine results for agricultural field scale analyses, and they aren’t able to meet the needs of the regional and national simulation with high spatial resolutions. We describe an efficient computational approach over deployment of the Environmental Policy Integrated Climate (EPIC) model at high-resolution scales using a high performance computing (HPC) technique in this study. We concentrate on an integrated procedure for executing millions of simulations required, but also address building databases for model initialization and forcing the simulations, and post-processing model outputs.

  6. Protein intake in Parkinsonian patients using the EPIC food frequency questionnaire.

    PubMed

    Marczewska, Agnieszka; De Notaris, Roberta; Sieri, Sabina; Barichella, Michela; Fusconi, Elisabetta; Pezzoli, Gianni

    2006-08-01

    The dietary habits of 45 Italian patients with Parkinson's disease (PD) and their spouses were investigated using the EPIC food frequency questionnaire. Average daily energy intake was similar, but PD patients consumed significantly more vegetable proteins and carbohydrates (both +18%; P = 0.01 and P = 0.001, respectively). Daily protein intake, which interferes with levodopa absorption, was 50% higher than the recommended daily allowance (1.2 vs. 0.8 g/kg) in both PD patients and spouses and was significantly higher in patients with moderate/severe symptoms (1.27 +/- 0.29 vs. 1.07 +/- 0.28 g/kg; P < 0.001). In patients taking levodopa, there was a correlation between daily levodopa dosage and protein intake (P = 0.027). Dietary habits of patients with advanced and/or fluctuating PD should always be checked, with particular reference to protein intake.

  7. Average energetic ion flux variations associated with geomagnetic activity from EPIC/STICS on Geotail

    NASA Technical Reports Server (NTRS)

    Christon, S. P.; Gloeckler, G.; Eastman, T. E.; McEntire, R. W.; Roelef, E. C.; Lui, A. T. Y.; Williams, D. J.; Frank, L. A.; Paterson, W. R.; Kokubun, S.; Matsumoto, H.; Kojima, H.; Mukai, T.; Saito, Y.; Yamamoto, T.

    1996-01-01

    The magnetotail ion flux measurements from the Geotail spacecraft are analyzed both with and without the application of selection criteria that identify the plasma regime in which an observation is obtained. The different results are compared with each other. The initial results on the changes of energetic ion flux and composition correlated to average substorm activity in different magnetotail plasma regimes are discussed. The energetic ions are measured using the energetic particles and ion composition (EPIC) experiment and the suprathermal ion composition spectrometer (STICS). The plasma, wave and field instruments of the Geotail satellite were used to identify the principle magnetotail plasma regimes of plasma sheet, lobe, and magnetospheric boundary layer, as well as the magnetosheath and solar wind. Energetic O and H ions were observed in all the plasma regimes.

  8. The peculiar dipping events in the disc-bearing young-stellar object EPIC 204278916

    NASA Astrophysics Data System (ADS)

    Scaringi, S.; Manara, C. F.; Barenfeld, S. A.; Groot, P. J.; Isella, A.; Kenworthy, M. A.; Knigge, C.; Maccarone, T. J.; Ricci, L.; Ansdell, M.

    2016-12-01

    EPIC 204278916 has been serendipitously discovered from its K2 light curve that displays irregular dimmings of up to 65 per cent for ≈25 consecutive days out of 78.8 d of observations. For the remaining duration of the observations, the variability is highly periodic and attributed to stellar rotation. The star is a young, low-mass (M-type) pre-main-sequence star with clear evidence of a resolved tilted disc from Atacama Large Millimeter/submillimeter Array (ALMA) observations. We examine the K2 light curve in detail and hypothesize that the irregular dimmings are caused by either a warped inner disc edge or transiting cometary-like objects in either circular or eccentric orbits. The explanations discussed here are particularly relevant for other recently discovered young objects with similar absorption dips.

  9. Cloud Information Content Analysis for EPIC's Oxygen A- and B-band Channels

    NASA Astrophysics Data System (ADS)

    Davis, A. B.; Sanghavi, S.

    2011-12-01

    The Earth Polychromatic Imaging Camera (EPIC) instrument on the Deep Space Climate Observatory (DSCOVR) will have two molecular oxygen channels: one for the well-known ``A'' band at~764 nm and one for the weaker ``B'' band at 688~nm. In both cases, a channel-integrated relative measurement of absorption is possible using an ``in-band'' channel and a nearby ``reference'' channel. Together, these four observations enable a rudimentary differential optical absorption spectroscopy (DOAS) of O2 in the characteristic retro-reflection geometry of the L1 vantage point. A priori, we thus have at best two new pieces of cloud information to access. EPIC's pixels have 10x10 km2 footprints at nadir (center of the illuminated disk), more as the viewing angle increases away from local zenith. What new information can be learned about clouds from these data on a pixel-by-pixel basis? O2 A-band observations from space have been pioneered with CNES's POLDER, ESA's SCIAMACHY, and JAXA's GOSat. NASA's OCO-2, to be launched in early 2013, will also have A-band capability. POLDER has low spectral and spatial resolutions, but offers multiple viewing directions for every pixel; SCIAMACHY has higher spectral but worse spatial resolution and just one viewing angle. GOSat has very high spectral but rather low spatial resolutions, again with the possibility of dense angular sampling, but no imaging (just one pixel at a time). OCO-2, a narrow swath imager, will have similarly high spectral resolution and reasonably high ( ˜2~km) spatial resolution. Of these four LEO missions, two are focused on CO2 DOAS, with O2 being assayed operationally only to deliver it in ppm's. POLDER and SCIAMACHY however have official cloud products based on A-band measurements. They contain, at the least, an estimate of cloud top height and, at the most, that plus an estimate of cloud pressure thickness. Cloud optical depth and effective particle size are derived from other spectral data, including continuum values

  10. 2014 consensus statement from the first Economics of Physical Inactivity Consensus (EPIC) conference (Vancouver).

    PubMed

    Davis, Jennifer C; Verhagen, Evert; Bryan, Stirling; Liu-Ambrose, Teresa; Borland, Jeff; Buchner, David; Hendriks, Marike R C; Weiler, Richard; Morrow, James R; van Mechelen, Willem; Blair, Steven N; Pratt, Mike; Windt, Johann; al-Tunaiji, Hashel; Macri, Erin; Khan, Karim M

    2014-06-01

    This article describes major topics discussed from the 'Economics of Physical Inactivity Consensus Workshop' (EPIC), held in Vancouver, Canada, in April 2011. Specifically, we (1) detail existing evidence on effective physical inactivity prevention strategies; (2) introduce economic evaluation and its role in health policy decisions; (3) discuss key challenges in establishing and building health economic evaluation evidence (including accurate and reliable costs and clinical outcome measurement) and (4) provide insight into interpretation of economic evaluations in this critically important field. We found that most methodological challenges are related to (1) accurately and objectively valuing outcomes; (2) determining meaningful clinically important differences in objective measures of physical inactivity; (3) estimating investment and disinvestment costs and (4) addressing barriers to implementation. We propose that guidelines specific for economic evaluations of physical inactivity intervention studies are developed to ensure that related costs and effects are robustly, consistently and accurately measured. This will also facilitate comparisons among future economic evidence.

  11. The tug-of-war between the West Philippine Sea and South China Sea Tropical Waters and Intermediate Waters in the Okinawa Trough

    NASA Astrophysics Data System (ADS)

    Chen, C. T. A.

    2015-12-01

    It has been known that Kuroshio subsurface waters are the major source of nutrients to the East China Sea continental shelf, a major fishing ground. It has also been known that subsurface waters that upwell onto the shelf are heavily affected by the South China Sea (SCS) Tropical Water and the SCS Intermediate Water which contain more nutrients than the tropical (Smax) and intermediate (Smin) waters from the West Philippine Sea (WPS). A front has been found to separate the tropical and intermediate waters from the SCS and WPS. The reported front in the Okinawa Trough, however, was identified based only on one-time data from a single cross-section in the central Okinawa Trough. Here historical hydrographic data between Mar. 1950 and Dec. 2011 in the Okinawa Trough and its neighborhood are analyzed. A vertical front tilted toward the west is found in all seasons in all years across the World Ocean Circulation Repeated Lines PR 18 and 19 as well as at the PN cross-section in the central Okinawa Trough. The front at the Smax level (sigma theta=24.6-24.9) shows large seasonal and interannual variations. In winter during normal and La Niña periods the presence of the SCS Tropical Water is the most prominent. It is the weakest in autumn during normal periods and in spring during La Nina periods. Yet during El Niño periods the SCS Tropical Water is the most prominent in spring and it becomes the weakest in winter. As for intermediate waters (Smin at sigma theta= 26.7-26.9) the WPS Intermediate Water and SCS Intermediate Water show much weaker seasonality compared with tropical waters although during normal periods in winter the WPS Intermediate Water contribution is slightly larger than during other times. During El Niño periods the WPS Intermediate Water contribution is the smallest but in spring it is much strengthened. On the other hand, the WPS Intermediate Water contribution is the smallest in spring, and the largest in winter during La Niña periods.

  12. Sanfilippo type B syndrome: five patients with an R565P homozygous mutation in the alpha-N-acetylglucosaminidase gene from the Okinawa islands in Japan.

    PubMed

    Chinen, Yasutsugu; Tohma, Takaya; Izumikawa, Yoshinori; Uehara, Hiroyuki; Ohta, Takao

    2005-01-01

    Sanfilippo type B syndrome (mucopolysaccharidosis type IIIB; MPS IIIB) is an autosomal recessive lysosomal storage disorder that is caused by defective alpha- N-acetylglucosaminidase (NAGLU). We performed NAGLU gene analysis in five patients with MPS IIIB whose respective parents from the Okinawa islands in Japan were not apparently consanguineous. We found a missense mutation (R565P) in all five patients (all homozygotes). We screened this mutation in 200 healthy subjects and found one heterozygote (none of the subjects were related to the patients). These results suggest that there may be a founder effect that results in the accumulation of R565P mutation in this area.

  13. Adherence to the Mediterranean diet and risk of bladder cancer in the EPIC cohort study.

    PubMed

    Buckland, G; Ros, M M; Roswall, N; Bueno-de-Mesquita, H B; Travier, N; Tjonneland, A; Kiemeney, L A; Sacerdote, C; Tumino, R; Ljungberg, B; Gram, I T; Weiderpass, E; Skeie, G; Malm, J; Ehrnström, R; Chang-Claude, J; Mattiello, A; Agnoli, C; Peeters, P H; Boutron-Ruault, M C; Fagherazzi, G; Clavel-Chapelon, F; Nilsson, L M; Amiano, P; Trichopoulou, A; Oikonomou, E; Tsiotas, K; Sánchez, M J; Overvad, K; Quirós, J R; Chirlaque, M D; Barricarte, A; Key, T J; Allen, N E; Khaw, K T; Wareham, N; Riboli, E; Kaaks, R; Boeing, H; Palli, D; Romieu, I; Romaguera, D; Gonzalez, C A

    2014-05-15

    There is growing evidence of the protective role of the Mediterranean diet (MD) on cancer. However, to date no epidemiological study has investigated the influence of the MD on bladder cancer. We evaluated the association between adherence to the MD and risk of urothelial cell bladder cancer (UCC), according to tumor aggressiveness, in the European Prospective Investigation into Cancer and Nutrition (EPIC). The analysis included 477,312 participants, recruited from ten European countries between 1991 and 2000. Information from validated dietary questionnaires was used to develop a relative Mediterranean diet score (rMED), including nine dietary components. Cox regression models were used to assess the effect of the rMED on UCC risk, while adjusting for dietary energy and tobacco smoking of any kind. Stratified analyses were performed by sex, BMI, smoking status, European region and age at diagnosis. During an average follow-up of 11 years, 1,425 participants (70.9% male) were diagnosed with a first primary UCC. There was a negative but non-significant association between a high versus low rMED score and risk of UCC overall (HR: 0.84 [95% CI 0.69, 1.03]) and risk of aggressive (HR: 0.88 [95% CI 0.61, 1.28]) and non-aggressive tumors (HR: 0.78 [95% CI 0.54, 1.14]). Although there was no effect modification in the stratified analyses, there was a significant 34% (p = 0.043) decreased risk of UCC in current smokers with a high rMED score. In EPIC, the MD was not significantly associated with risk of UCC, although we cannot exclude that a MD may reduce risk in current smokers.

  14. EPIC 201702477b: A Transiting Brown Dwarf from K2 in a 41 day Orbit

    NASA Astrophysics Data System (ADS)

    Bayliss, D.; Hojjatpanah, S.; Santerne, A.; Dragomir, D.; Zhou, G.; Shporer, A.; Colón, K. D.; Almenara, J.; Armstrong, D. J.; Barrado, D.; Barros, S. C. C.; Bento, J.; Boisse, I.; Bouchy, F.; Brown, D. J. A.; Brown, T.; Cameron, A.; Cochran, W. D.; Demangeon, O.; Deleuil, M.; Díaz, R. F.; Fulton, B.; Horne, K.; Hébrard, G.; Lillo-Box, J.; Lovis, C.; Mawet, D.; Ngo, H.; Osborn, H.; Palle, E.; Petigura, E.; Pollacco, D.; Santos, N.; Sefako, R.; Siverd, R.; Sousa, S. G.; Tsantaki, M.

    2017-01-01

    We report the discovery of EPIC 201702477b, a transiting brown dwarf in a long period (40.73691 ± 0.00037 day) and eccentric (e = 0.2281 ± 0.0026) orbit. This system was initially reported as a planetary candidate based on two transit events seen in K2 Campaign 1 photometry and later validated as an exoplanet candidate. We confirm the transit and refine the ephemeris with two subsequent ground-based detections of the transit using the Las Cumbres Observatory Global Telescope 1 m telescope network. We rule out any transit timing variations above the level of ∼30 s. Using high precision radial velocity measurements from HARPS and SOPHIE we identify the transiting companion as a brown dwarf with a mass, radius, and bulk density of 66.9 ± 1.7 MJ, 0.757 ± 0.065 RJ, and 191 ± 51 g cm‑3 respectively. EPIC 201702477b is the smallest radius brown dwarf yet discovered, with a mass just below the H-burning limit. It has the highest density of any planet, substellar mass object, or main-sequence star discovered so far. We find evidence in the set of known transiting brown dwarfs for two populations of objects—high mass brown dwarfs and low mass brown dwarfs. The higher-mass population have radii in very close agreement to theoretical models, and show a lower-mass limit around 60 MJ. This may be the signature of mass-dependent ejection of systems during the formation process.

  15. EPICS Slow Controls System in the Search for a Neutron Electric Dipole Moment

    NASA Astrophysics Data System (ADS)

    Taylor, Courtney

    2006-10-01

    The measurement of a nonzero electric dipole moment (EDM) of the neutron would significantly impact our understanding of the nature of the electro-weak and strong interactions. The goal of the current experiment is to improve the measurement sensitivity of the EDM by two orders of magnitude. The experiment is based on the magnetic-resonance technique of rotating a magnetic dipole moment in a magnetic field. The measurement of the neutron EDM comes from a measurement of the difference in the precession frequencies of neutrons when a strong electric field parallel to the magnetic field is reversed. This construction project is divided into a number of subsystems, five of which require automated control. The Experimental Physics and Industrial Control System (EPICS) is a slow-controls data acquisition (DAQ) system and is the system of choice for this experiment. It was selected for both its ease of use and ability to act as a total control system for large systems. As part of the initial research and development for the EDM project, we are setting up a prototype system that will eventually be copied and sent to the subsystem managers. This prototype consists of a VME crate housing a single board computer and DAQ modules. EPICS, running on a PC with CentOS Linux-x86, interfaces with the VME single board computer and provides a graphical user interface for the control system. The details on building this prototype DAQ system will be presented. Supported in part by the U.S. DoE.

  16. Development and Validation of an Abbreviated Version of the Expanded Prostate Cancer Index Composite Instrument (EPIC-26) for Measuring Health-Related Quality of Life Among Prostate Cancer Survivors

    PubMed Central

    Szymanski, Konrad M.; Wei, John T.; Dunn, Rodney L.; Sanda, Martin G.

    2010-01-01

    Objectives Widespread implementation of HRQOL measurement in prostate cancer practice and research requires concise instruments. Having 50 questions, the full-length Expanded Prostate cancer Index Composite (EPIC) is cumbersome to administer outside of studies focusing exclusively on HRQOL. To facilitate HRQOL measurement in a broad range of prostate cancer research and practice settings, we developed and validated an abbreviated version of EPIC. Methods 50 questions that comprise the full-length EPIC-50 were evaluated to identify items suitable for elimination while retaining ability to measure the 5 prostate cancer-specific HRQOL domains of EPIC-50. The resulting abbreviated version (EPIC-26) was validated using question responses from 252 subjects who had brachytherapy, external radiotherapy or prostatectomy for prostate cancer. EPIC-26 internal consistency was measured by Cronbach's alpha coefficient and reliability by test-retest correlation. Results Based on high item-scale correlations, clinically relevant content, and preservation of domain psychometrics, 26 items were retained in EPIC-26 from 50 questions in the full length EPIC-50. High correlation was observed between EPIC-50 and EPIC-26 versions of urinary incontinence, urinary irritation/obstruction, bowel, sexual and vitality/hormonal domain scores (all r ≥0.96). Correlations between different domains were low, confirming that EPIC-26 retains the ability to discern 5 distinct HRQOL domains. Internal consistency and test-retest reliability for EPIC-26 (Cronbach's alpha ≥0.70 and r ≥ 0.69, respectively for all 5 HRQOL domains) support its validity. Conclusions EPIC-26 is a brief, valid and reliable subjective measure of health quality among prostate cancer patients and suitable for measuring HRQOL among patients undergoing treatment for early stage prostate cancer. PMID:20350762

  17. Geochemical Characteristics of Volcanic Rocks from the Southern Okinawa Trough and its Implications for Tectono-magmatic Evolution

    NASA Astrophysics Data System (ADS)

    Shinjo, R.; Hokakubo, S.; Haraguchi, S.; Matsumoto, T.; Woodhead, J.

    2003-12-01

    The Okinawa Trough is a site of ongoing backarc rifting behind the Ryukyu arc-trench system. Recent intensive surveys, including submersible dives, at the southern Okinawa Trough (SOT) have revealed details of bathymetric, geological, and geophysical features. Here, we present the petrological and geochemical characteristics of volcanic rocks collected during these cruises, and discuss its relation to the evolutionary stage of rifting. Based on bathymetirc and magmatic features, SOT can be divided into two (i.e., eastern and western) segments with non-transform offset at ˜ 123.5° E. The eastern segment represents a well-developed rift system with E-W-trending central graben and separated NE-SW-trending volcanic front; these two features merge at ˜ 125° E. In contrast, the western segment is in the incipient rifting stage; rift axis exists close to 100 km contour of the Wadati-Benioff zone. The most notable feature is the presence of 'abnormal' volcanic chain (Cross Backarc Volcanic Trail, CBVT), which trends NE-SW and is obviously oblique to the axial trend. All rocks are subalkaline, but range from basalt to rhyolite; dacite-rhyolite are dominant in the eastern volcanic front and CBVT. Basalts from both segments are low-K tholeiites; they have high abundance of LILEs relative to HFSEs, negative Nb anomalies on MORB-normalized diagrams, and range of 143Nd/144Nd (0.5128-0.5129) and 87Sr/86Sr (0.7034-0.7048). Pb isotope systematics indicate 206Pb/204Pb=18.398-18.582, 207Pb/204Pb=15.594-15.652 and 208Pb/204Pb=38.570-38.912, clearly above the Northern Hemisphere Reference Line. These elemental and isotopic variations are compatible with derivation from Indian Ocean MORB-like mantle with strong overprint of subduction components from the slab. There is clear difference among more felsic rocks between two segments. At similar silica contents, most of felsic rocks from the western segment, including CBVT rhyolites, have higher LILE contents, 87Sr/86Sr and 208Pb/204Pb

  18. Carbon, nitrogen and sulfur isotopic characterization of biological samples from chemo-synthetic communities in southern Okinawa, Japan

    NASA Astrophysics Data System (ADS)

    Yamanaka, T.; Mizota, C.; Ishibashi, J.; Nakayama, N.; Tsunogai, U.; Morimoto, Y.; Kataoka, S.; Kosaka, A.; Maki, Y.; Fujiwara, Y.; Tsuchida, S.; Fujikura, K.

    2002-12-01

    Direct measurement of carbon, nitrogen, and sulfur isotopic compositions of the seafloor hydrothermal bacteria involves many difficulties, mainly due to lack of suitable size of samples. In contrast, the isotopic measurements of the hydrothermal vent animals can easily be made. The animals depends mainly on bacterial primary production. Carbon, nitrogen, and sulfur budget from the bacterial source should be estimated using the stable isotopic compositions of the soft tissue constituents. The hydrothermal environment involves several types of chemoautotrophc and methanotrophic bacteria such as suspending, matting, and endosymbiosis. Each hydrothermal vent animal feeds on or harbors the bacteria according to their physiology and ecology. For example, the crustaceans, Shinkaiya and Alvinocaris, feed on bacteria and the deep-sea mussel, Bathymodiolus, harbors endosymbionts in their gill tissues. Our objectives are to make clear the sources of carbon, nitrogen, and sulfur of these bacteria and the relationship between the bacteria and the geochemistry of emitting hydrothermal fluids. We studied the vent animals from two hydrothermal systems where the tectonic settings are significantly different. One is located on the volcanic front of the Ryukyu Arc and the other is located on the west edge of the Okinawa Trough back-arc basin. The former hydrothermal vent site is active in the caldera where sediment starved hydrothermal system, while the latter site is active on the thick sediment-covered small trough. The geological settings of these two hydrothermal sites would provide different geochemical environments. We will discuss how the vent animals succeed to the geochemical characteristics from the viewpoint of stable isotope geochemistry.

  19. Magnetic anomalies associated with abundant production of pyrrhotite in a sulfide deposit in the Okinawa Trough, Japan

    NASA Astrophysics Data System (ADS)

    Honsho, Chie; Yamazaki, Toshitsugu; Ura, Tamaki; Okino, Kyoko; Morozumi, Haruhisa; Ueda, Satoshi

    2016-11-01

    We report here results from a deep-sea magnetic survey using an autonomous underwater vehicle over the Hakurei hydrothermal site, in the middle Okinawa Trough. Magnetic inversion revealed that the Hakurei site is associated with well-defined high-magnetization zones distributed within a broad low-magnetization zone. Results from rock magnetic measurements, performed on sulfide ore samples obtained by drilling, showed that some samples possessed extremely high natural remanent magnetization (NRM) (as much as 6.8-953.0 A/m), although most of the measured samples had much lower NRM. These high-NRM samples were characterized by high Königsberger ratios (101-103), indicating much larger NRM than induced magnetization, and contained pyrrhotite as the only magnetic mineral. This suggests that NRM carried by pyrrhotite is the source of the observed magnetic anomalies. The wide range of NRM intensity was considered to be due to a highly heterogeneous distribution of pyrrhotite, because pyrrhotite was commonly identified in both the high-NRM and low-NRM samples. Pyrrhotite production may have been occasionally drastically increased, with highly magnetic ores formed as a result. Rapid burial of active vents may result in the creation of an extensive reducing environment under the seafloor, which is favorable to pyrrhotite production, and may also prevent oxidation of pyrrhotite by isolating it from seawater. Because the magnetization intensity of sulfide ores was highly variable, it would not be straightforward to estimate the quantity of ore deposits from the magnetic anomalies. Nevertheless, this study demonstrates the usefulness of magnetic surveys in detecting hydrothermal deposits.

  20. IL5RA polymorphisms, smoking and eczema in Japanese women: the Kyushu Okinawa Maternal and Child Health Study.

    PubMed

    Miyake, Y; Tanaka, K; Arakawa, M

    2015-02-01

    The present case-control study examined the relationship between IL5RA SNPs and eczema in young adult Japanese women. Cases and control subjects were selected from pregnant women who participated in the baseline survey of the Kyushu Okinawa Maternal and Child Health Study, which is an ongoing prebirth cohort study. Cases comprised 188 women with eczema in the previous 12 months as defined according to the criteria of the International Study of Asthma and Allergies in Childhood (ISAAC), regardless of the presence of a doctor's diagnosis of atopic eczema. Control subjects comprised 1130 women without eczema as defined according to the ISAAC criteria who also had not been diagnosed with atopic eczema by a doctor. Compared with the AA genotype of IL5RA SNP rs17881144, the AT genotype, but not the TT genotype, was significantly associated with a decreased risk of eczema. The ATTAGA haplotype and the GTAGCA haplotype of rs17882210, rs3804797, rs334809, rs9831572, rs6771148 and rs17881144 were significantly associated with an increased risk of eczema. In contrast, the GCTGCA haplotype was significantly related to a decreased risk of eczema. Multiplicative interactions between IL5RA SNPs rs334809 and rs17881144 and smoking with respect to eczema were marginally significant (P = 0.07 and 0.07, respectively). This is the first study to show significant associations between IL5RA SNP rs17881144, the ATTAGA haplotype, the GTAGCA haplotype, and the GCTGCA haplotype and eczema. Smoking may modify the relationships between SNPs rs334809 and rs17881144 and eczema.

  1. A unique Fe-rich carbonate chimney associated with cold seeps in the Northern Okinawa Trough, East China Sea

    NASA Astrophysics Data System (ADS)

    Sun, Zhilei; Wei, Helong; Zhang, Xunhua; Shang, Luning; Yin, Xijie; Sun, Yunbao; Xu, Lei; Huang, Wei; Zhang, Xianrong

    2015-01-01

    The East China Sea is an important marginal sea of the Western Pacific Ocean, from which natural gas hydrate sample has not been acquired so far. Recently, copious carbonate chimneys have been discovered in turbidite deposits in the olistostrome zone located on the west slope of the northern section of Okinawa Trough. Here, the petrology, geochemistry and chronology of an iron-rich carbonate chimney were characterized, confirming a close relationship between its formation and the dissociation of natural gas hydrate beneath the chimney in OT. A distinctive relationship has been observed between goethite and total carbonate contents along with a negative correlation between Fe and Ca contents. Conversely, abundant Fe accumulated on carbonate substrate by mineralized microorganisms. The δ13C values of the chimney wall were from -27.56 to -43.66‰ (average: -37.18‰, V-PDB), implying anaerobic oxidation of methane (AOM) as a predominant controlling factor on carbonate precipitation. As no pyrite and organic residues were identified in the iron-rich chimney, it was assumed that AOM was coupled to the iron reduction reaction at least to some extent during the chimney growth owing to the local deficiency of sulfate supply. The δ56Fe values of bulk chimney wall (ranging from -0.316‰ to -0.023‰, average -0.134‰) suggest mass and isotope exchanges between the chimney and ambient environment during its growth history, whereas the enrichment of δ18O of the carbonate implies these carbonate sourcing from hydrate dissociation underlying our sampling site. This assumption has been supported by a distinct bottom simulation reflector (BSR) and a well-developed fault system beneath the sampling site. This is the first report of cold seepage inside the OT and the identified iron-dependent AOM has shed a new light to the Carbon cycle related to the marine methane oxidation, particularly before the Great Oxidation Event ~2.45 Ga ago.

  2. Sea surface temperature proxies (alkenones, foraminiferal Mg/Ca, and planktonic foraminiferal assemblage) and their implications in the Okinawa Trough

    NASA Astrophysics Data System (ADS)

    Kim, Ryoung Ah; Lee, Kyung Eun; Bae, Si Woong

    2015-12-01

    We reviewed three sea surface temperature (SST) proxies in the Okinawa Trough (OT): alkenones, planktonic foraminiferal Mg/Ca, and planktonic foraminiferal assemblages. The seasonal and vertical distribution patterns of each proxy-related organism in the water column were reviewed to confirm the applicability of each proxy. In addition, current SSTs (Japan Oceanographic Data Center dataset from 1906 to 2003) were compared with core-top sediment temperatures reconstructed using the proxies. Temperatures calculated using the alkenone unsaturation index represent annual mean SSTs, and temperatures calculated using Mg/Ca of Globigerinoides ruber capture summer to autumn (June-November) SSTs. Core-top August SSTs calculated from planktonic foraminiferal assemblages corresponded well with the observed SSTs, but core-top February temperatures were ~3.6 °C warmer than the observed SSTs. SST proxy estimates from marine sediments dating back to the late Holocene (0-3 cal ky BP) and the last glacial maximum (18-21 cal ky BP) were compared. Comparisons between proxy SST estimates show that foraminiferal assemblage-based August SSTs were the warmest. Alkenone-based temperature estimates were lower than Mg/Ca-based temperature estimates, probably because the alkenone-based temperature represents the annual mean temperature, whereas the Mg/Ca-based temperature represents the summer-autumn mean temperature. February assemblage SSTs seem to be greatly affected by the statistical technique and/or database used. These results suggest that seasonality should be considered in past SST reconstruction using alkenone and Mg/Ca in the OT. The planktonic foraminiferal assemblage technique does not appear to be promising with respect to accurately reconstructing past SSTs (especially winter) in the OT. Habitat depth may not be an issue because both alkenone producers and G. ruber live at the upper surface mixed layer in the area.

  3. Isotopic composition and speciation of sedimentary nitrogen and carbon in the Okinawa Trough over the past 30 ka

    NASA Astrophysics Data System (ADS)

    Zheng, Li-Wei; Hsiao, Silver Sung-Yun; Ding, Xiao-Dong; Li, Dawei; Chang, Yuan-Pin; Kao, Shuh-Ji

    2015-10-01

    Total organic carbon to total nitrogen ratios (C/N) and their isotopic compositions (δ13CTOC and δ15NTN) are oft-applied proxies to discern terrigenous from marine-sourced organics and to unravel ancient environmental information. In high depositional Asian marginal seas, the inclusion of N-bearing minerals in the bulk sediment dilutes or masks signals sought after in δ15N and δ13C analyses, thus leading to incorrect and even contradictory interpretations. We used KOH-KOBr to separate operationally defined total organic matter into oxidizable (labile) and residual fractions for content and isotope measurements. In a sediment core in the Okinawa Trough, significant amounts of carbon and nitrogen existed in the residual phase, in which the C/N ratio was ~9, resembling most documented sedimentary bulk C/N ratios in the China marginal seas. The residual carbon, which was included in operationally defined total organic carbon (TOC), displayed a δ13C range (-22.7 to -18.9‰, mean -20.7‰) similar to the oft-used marine end-member. After removing the interference from the residual fraction, we found that the temporal pattern of δ13CLOC (LOC denotes labile organic carbon) was more variable. The residual nitrogen content was associated with illite, suggesting a terrestrial origin. Additionally, δ15N in the residual fraction likely reflected the climatic controls (e.g., precipitation) on lithogenic source materials. Further studies are required to explore the controlling factors for carbon and nitrogen isotopic speciation and to retrieve the information locked in the residual fraction.

  4. ITCZ and ENSO pacing on East Asian winter monsoon variation during the Holocene: Sedimentological evidence from the Okinawa Trough

    NASA Astrophysics Data System (ADS)

    Zheng, Xufeng; Li, Anchun; Wan, Shiming; Kao, Shuhji; Kuhn, Gerhard

    2016-04-01

    Deep-sea fan sediments provide an excellent geological archive for paleoenvironment reconstruction. Grain size, clay mineral and elemental (Ti, Fe, Ca) compositions were measured for a core retrieved from a submarine fan in the Okinawa Trough. Varimax-rotated Principal Component Analysis (V-PCA) on time-evolution of grain size spectrum reveals that, since the Holocene, sediment was transported mainly by the benthic nepheloid layer (33%) and upper layers (33%) which is driven by the East Asian winter monsoon (EAWM). The intensification of the Kuroshio Current during the Holocene, masks the fluvial signal of the summer monsoon and obstructs clay minerals derived from the Yellow River, a major contributor prior to 12 ka BP. A new grain size index (GSI), which represents the EAWM well, exhibits a negative correlation with the δ18O record in Dongge Cave, China during the Holocene when sea level was relatively steady. This anticorrelation suggests the southward migration of the Intertropical Convergence Zone (ITCZ). The consistency among our records and rainfall records in Peru, Ti counts in the Cariaco Basin, monsoon records in Oman and the averaged summer insolation pattern at 30°N further support the ITCZ's impact on monsoon systems globally. Cross-Correlation Analyses for GSI and log(Ti/Ca) against δ18O record in Dongge Cave reveal a decoupling between the East Asian winter and summer monsoon during 5500-2500 cal yr BP, with greater complexity in the last 2500 years. This can be attributed to exacerbated ENSO mode fluctuations and possibly anthropogenic interference superimposed on insolation and ITCZ forcing.

  5. Discrepancy in the degree of population differentiation between color-morph frequencies and neutral genetic loci in the damselfly Ischnura senegalensis in Okinawa Island, Japan.

    PubMed

    Inomata, Nobuyuki; Hironaka, Kumiko; Sawada, Kouji; Kuriwada, Takashi; Yamahira, Kazunori

    2015-06-01

    Evaluation of relative contribution of natural selection and stochastic processes to population differentiation has been of great interest in evolutionary biology. In a damselfly, Ischnura senegalensis, females show color dimorphism (gynochrome vs. androchrome), and color-morph frequencies are known to greatly vary among local populations within Okinawa Island, a small island of Ryukyu Archipelago, Japan. In this study, to examine the effects of natural selection and stochastic processes on the within-island variation in color-morph frequencies, we compared the degree of population differentiation at the color-morph locus with that at a mitochondrial DNA region and ten nuclear microsatellite loci. F ST values at the neutral loci were close to zero, indicating presence of sufficient gene flow (dispersal of adult individuals) between the local populations. In contrast, F ST values at the color-morph locus were significantly different from zero. These results suggest that variation in female color-morph frequencies observed among local populations in Okinawa Island has been caused by divergent selection acting on the phenotype and/or genes tightly linked with the color locus.

  6. First Comparative Analysis of the Community Structures and Carbon Metabolic Pathways of the Bacteria Associated with Alvinocaris longirostris in a Hydrothermal Vent of Okinawa Trough

    PubMed Central

    Sun, Qing-lei; Zeng, Zhi-gang; Chen, Shuai; Sun, Li

    2016-01-01

    Alvinocaris longirostris is a species of shrimp existing in the hydrothermal fields of Okinawa Trough. To date the structure and function of the microbial community associated with A. longirostris are essentially unknown. In this study, by employment of the techniques of high through-put sequencing and clone library construction and analysis, we compared for the first time the community structures and metabolic profiles of microbes associated with the gill and gut of A. longirostris in a hydrothermal field of Okinawa Trough. Fourteen phyla were detected in the gill and gut communities, of which 11 phyla were shared by both tissues. Proteobacteria made up a substantial proportion in both tissues, while Firmicutes was abundant only in gut. Although gill and gut communities were similar in bacterial diversities, the bacterial community structures in these two tissues were significantly different. Further, we discovered for the first time the existence in the gill and gut communities of A. longirostris the genes (cbbM and aclB) encoding the key enzymes of Calvin-Benson-Bassham (CBB) cycle and the reductive tricarboxylic acid (rTCA) cycle, and that both cbbM and aclB were significantly more abundant in gill than in gut. Taken together, these results provide the first evidence that at least two carbon fixation pathways are present in both the gill and the gut communities of A. longirostris, and that the communities in different tissues likely differ in autotrophic productivity. PMID:27111851

  7. Photochemical Formation of Fe(II) and Peroxides in Coastal Seawater Collected around Okinawa Island, Japan - Impact of Red Soil Pollution

    NASA Astrophysics Data System (ADS)

    Okada, K.; Nakajima, H.; Higuchi, T.; Fujimura, H.; Arakaki, T.; Taira, H.

    2003-12-01

    In a study to elucidate the impacts of red soil pollution on the oxidizing power of seawater, photochemical formation of Fe(II) and peroxides was studied in seawaters collected around Okinawa Island, Japan. The northern part of Okinawa Island suffers from red soil pollution which is caused mainly by land development such as pineapple farming and the construction of recreational facilities. We studied photochemical formation of peroxides and Fe(II) in the same seawater samples because the reaction between HOOH and Fe(II) forms hydroxyl radical (OH radical), the most potent environmental oxidant. Photochemical formation of Fe(II) was fast and reached steady-state in 30 minutes of simulated sunlight illumination and the steady-state Fe(II) concentrations were about 80% of total iron concentrations. Photochemical formation of peroxides was relatively slow and formation kinetics varied, depending on the initial peroxide concentrations. Because photochemical formation of peroxides was faster and total iron concentrations in the red soil polluted seawater were higher, red soil polluted seawater is expected to have greater oxidizing power than seawater that is not polluted with red soil.

  8. Effect of climatic conditions on epidemic patterns of influenza in Okinawa, Japan, during the pandemic of 2009: surveillance of rapid antigen test results.

    PubMed

    Iha, Yoshikazu; Higa, Futoshi; Sunagawa, Satoko; Naka, Masamitsu; Cash, Haley L; Miyagi, Kazuya; Haranaga, Shusaku; Tateyama, Masao; Uno, Tsukasa; Fujita, Jiro

    2012-07-01

    Climatic conditions may have affected the incidence of influenza during the pandemic of 2009 as well as at other times. This study evaluated the effects of climatic conditions on influenza incidence in Okinawa, a subtropical region in Japan, during the 2009 pandemic using surveillance data from rapid antigen test (RAT) results. Weekly RAT results performed in four acute care hospitals in the Naha region of the Okinawa Islands from January 2007 to July 2011 were anonymously collected for surveillance of regional influenza prevalence. Intense epidemic peaks were noted in August 2009 and December 2009-January 2010 during the influenza pandemic of 2009. RAT positivity rates were lower during the pandemic period than during the pre- and post-pandemic periods. Lower ambient temperature was associated with higher influenza incidence during pre- and post-pandemic periods but not during the pandemic of 2009. Lower relative humidity was associated with higher influenza incidence during the pandemic as well as during the other two periods. The association of climatic conditions and influenza incidence was less prominent during the pandemic of 2009 than during pre- and post-pandemic periods.

  9. First Comparative Analysis of the Community Structures and Carbon Metabolic Pathways of the Bacteria Associated with Alvinocaris longirostris in a Hydrothermal Vent of Okinawa Trough.

    PubMed

    Sun, Qing-Lei; Zeng, Zhi-Gang; Chen, Shuai; Sun, Li

    2016-01-01

    Alvinocaris longirostris is a species of shrimp existing in the hydrothermal fields of Okinawa Trough. To date the structure and function of the microbial community associated with A. longirostris are essentially unknown. In this study, by employment of the techniques of high through-put sequencing and clone library construction and analysis, we compared for the first time the community structures and metabolic profiles of microbes associated with the gill and gut of A. longirostris in a hydrothermal field of Okinawa Trough. Fourteen phyla were detected in the gill and gut communities, of which 11 phyla were shared by both tissues. Proteobacteria made up a substantial proportion in both tissues, while Firmicutes was abundant only in gut. Although gill and gut communities were similar in bacterial diversities, the bacterial community structures in these two tissues were significantly different. Further, we discovered for the first time the existence in the gill and gut communities of A. longirostris the genes (cbbM and aclB) encoding the key enzymes of Calvin-Benson-Bassham (CBB) cycle and the reductive tricarboxylic acid (rTCA) cycle, and that both cbbM and aclB were significantly more abundant in gill than in gut. Taken together, these results provide the first evidence that at least two carbon fixation pathways are present in both the gill and the gut communities of A. longirostris, and that the communities in different tissues likely differ in autotrophic productivity.

  10. The tug-of-war between the West Philippine Sea and South China Sea Tropical Waters and Intermediate Waters in the Okinawa Trough

    NASA Astrophysics Data System (ADS)

    Chen, Chen-Tung Arthur; Yeh, Ya-Ting; Yanagi, Tetsuo; Bai, Yan; He, Xianqiang; Huang, Ting-Hsuan

    2016-03-01

    Kuroshio subsurface waters are the major source of nutrients to the East China Sea continental shelf, a major fishing ground. These subsurface waters are heavily affected by the South China Sea (SCS) Tropical and Intermediate Waters which contain more nutrients than the tropical (Smax) and intermediate (Smin) waters from the West Philippine Sea (WPS). A front was found to separate these waters from the SCS and WPS. The reported front in the Okinawa Trough, however, was identified based only on one-time data from a single cross section. Here historical hydrographic data between March 1950 and December 2011 are analyzed. A vertical front tilted toward the west is found in all seasons in all years in the Okinawa Trough. In winter, the presence of the SCS Tropical Water is the most prominent. It is the weakest in autumn. As for intermediate waters (Smin), the WPS and SCS Intermediate Waters show much weaker seasonality compared with tropical waters although in summer, the WPS Intermediate Water contribution is slightly larger than during other times.

  11. The Association Between Diet and Obesity in Specific European Cohorts: DiOGenes and EPIC-PANACEA.

    PubMed

    Feskens, Edith J M; Sluik, Diewertje; Du, Huaidong

    2014-03-01

    This review summarizes evidence from two projects embedded within the European Prospective Investigation into Cancer and Nutrition (EPIC) on the association between dietary factors and obesity risk, in particular change in weight and waist circumference. A total of 12 publications from DiOGenes and six from EPIC-PANACEA were reviewed. The results show that dietary fiber, especially cereal fiber, was inversely associated with weight or waist change, as well as fruit/vegetable intake and the Mediterranean dietary pattern. Energy density and meat consumption were positively associated with the anthropometric changes, as was glycemic index with waist change. Clear associations with macronutrient composition were not observed. In additional studies, interactions with genetic polymorphism were investigated and shown to be present for protein intake and GI, although effect estimates were small. These interactions require replication. These results show that in European populations dietary factors are independently associated with weight/waist change. The findings provide further clues for the prevention of obesity.

  12. The Electric Propulsion Interactions Code (EPIC): A Member of the NASA Space Environment and Effects Program (SEE) Toolset

    NASA Technical Reports Server (NTRS)

    Mikellides, Ioannis G.; Mandell, Myron J.; Kuharski, Robert A.; Davis, D. A.; Gardner, Barbara M.; Minor, Jody

    2003-01-01

    Science Applications International Corporation is currently developing the Electric Propulsion Interactions Code, EPIC, as part of a project sponsored by the Space Environments and Effects Program at NASA Marshall Space Flight Center. Now in its second year of development, EPIC is an interactive computer toolset that allows the construction of a 3-D spacecraft model, and the assessment of a variety of interactions between its subsystems and the plume from an electric thruster. This paper reports on the progress of EPZC including the recently added ability to exchange results the NASA Charging Analyzer Program, Nascap-2k. The capability greatly enhances EPIC's range of applicability. Expansion of the toolset's various physics models proceeds in parallel with the overall development of the software. Also presented are recent upgrades of the elastic scattering algorithm in the electric propulsion Plume Tool. These upgrades are motivated by the need to assess the effects of elastically scattered ions on the SIC for ion beam energies that exceed loo0 eV. Such energy levels are expected in future high-power (>10 kW) ion propulsion systems empowered by nuclear sources.

  13. EPIC 219388192b—An Inhabitant of the Brown Dwarf Desert in the Ruprecht 147 Open Cluster

    NASA Astrophysics Data System (ADS)

    Nowak, Grzegorz; Palle, Enric; Gandolfi, Davide; Dai, Fei; Lanza, Antonino F.; Hirano, Teruyuki; Barragán, Oscar; Fukui, Akihiko; Bruntt, Hans; Endl, Michael; Cochran, William D.; Prada Moroni, Pier G.; Prieto-Arranz, Jorge; Kiilerich, Amanda; Nespral, David; Hatzes, Artie P.; Albrecht, Simon; Deeg, Hans; Winn, Joshua N.; Yu, Liang; Kuzuhara, Masayuki; Grziwa, Sascha; Smith, Alexis M. S.; Guenther, Eike W.; Van Eylen, Vincent; Csizmadia, Szilard; Fridlund, Malcolm; Cabrera, Juan; Eigmüller, Philipp; Erikson, Anders; Korth, Judith; Narita, Norio; Pätzold, Martin; Rauer, Heike; Ribas, Ignasi

    2017-03-01

    We report the discovery of EPIC 219388192b, a transiting brown dwarf in a 5.3 day orbit around a member star of Ruprecht 147, the oldest nearby open cluster association, which was photometrically monitored by K2 during its Campaign 7. We combine the K2 time-series data with ground-based adaptive optics imaging and high-resolution spectroscopy to rule out false positive scenarios and determine the main parameters of the system. EPIC 219388192b has a radius of {R}{{b}}=0.937+/- 0.032 R Jup and mass of {M}{{b}}=36.84+/- 0.97 M Jup, yielding a mean density of 59.6+/- 7.6 {{g}} {{cm}}-3. The host star is nearly a solar twin with mass {M}\\star =1.01+/- 0.04 M ⊙, radius {R}\\star =1.01+/- 0.03 R ⊙, effective temperature T eff = 5850 ± 85 K, and iron abundance [Fe/H] = 0.03 ± 0.08 dex. Its age, spectroscopic distance, and reddening are consistent with those of Ruprecht 147, corroborating its cluster membership. EPIC 219388192b is the first mature brown dwarf with precise determinations of mass, radius, and age, and serves as benchmark for evolutionary models in the substellar regime.

  14. Measuring and Predicting Prostate Cancer Related Quality of Life Changes using the Expanded Prostate Cancer Index Composite for Clinical Practice (EPIC-CP)

    PubMed Central

    Chipman, Jonathan J.; Sanda, Martin G.; Dunn, Rodney L.; Wei, John T.; Litwin, Mark S.; Crociani, Catrina M.; Regan, Meredith M.; Chang, Peter

    2016-01-01

    Purpose To expand the clinical usefulness of the Expanded Prostate Cancer Index Composite for Clinical Practice (EPIC-CP) by evaluating its responsiveness to health related quality of life (HRQOL) changes, defining the minimally important differences (MID) for an individual patient's change in each domain, and applying it to a sexual outcome prediction model. Methods In 1,201 subjects from a previously described multi-center, longitudinal cohort, we modeled each treatment group's EPIC-CP domain scores at pre-treatment, short-term, and long-term follow-up. We considered post-treatment domain score changes from pre-treatment ≥ 0.5 standard deviations (SD) clinically significant and with a p-value ≤ 0.01 as statistically significant. We determined domain MIDs using the 0.5 pooled SD of the 2, 6, 12, and 24 month post-treatment changes from pre-treatment. We recalibrated an EPIC-CP-based nomogram model predicting 2-year post-prostatectomy functional erections from that developed using EPIC-26. Results For every HRQOL domain, EPIC-CP was sensitive to similar post-treatment HRQOL changes over time as had been observed using EPIC-26. The EPIC-CP MIDs for changes in the urinary incontinence, urinary irritation/obstruction, bowel, sexual, and vitality/hormonal domains are 1.0, 1.3, 1.2, 1.6, and 1.0, respectively. The EPIC-CP-based sexual prediction model performs well (AUC=0.76) and shows robust agreement with its EPIC-26-based counterpart, with predicted probability differences between models of ≤10% for 95% of individuals and a mean difference of 0.0 (SD=0.05) across all individuals. Conclusions EPIC-CP is responsive to HRQOL changes during convalescence, and can be used to predict 2-year post-prostatectomy sexual outcomes. Its use can facilitate shared medical decision-making and patient-centered care. PMID:24076307

  15. Cohort profile: A prospective cohort study of objective physical and cognitive capability and visual health in an ageing population of men and women in Norfolk (EPIC-Norfolk 3).

    PubMed

    Hayat, Shabina A; Luben, Robert; Keevil, Victoria L; Moore, Stephanie; Dalzell, Nichola; Bhaniani, Amit; Khawaja, Anthony P; Foster, Paul; Brayne, Carol; Wareham, Nicholas J; Khaw, Kay-Tee

    2014-08-01

    The European Prospective Investigation of Cancer (EPIC) is a 10-country collaborative study in which EPIC-Norfolk is one of the UK centres. EPIC-Norfolk examined 25 639 men and women resident in East Anglia (aged 40-79 years), between 1993 and 1997. The EPIC collaboration was set up to examine the dietary determinants of cancer, but the remit in the EPIC-Norfolk cohort was broadened from the outset to include determinants of other health conditions and chronic diseases. EPIC-Norfolk completed a third round of health examinations (EPIC-Norfolk 3 or 3HC) in December 2011, on 8623 participants in the age range 48-92 years. EPIC-Norfolk focused on objective measures of cognitive function, physical capability and visual health, adapting this existing mid-life cohort to the current need to investigate healthy and independent living for ageing societies. With a wealth of longitudinal data and a biobank (including DNA) collected at up to three separate time points, EPIC-Norfolk offers the unique opportunity to investigate the association of lifestyle and biological factors, including genetic exposures, with a range of health outcomes in middle and later life. Information for data access can be found on the study website, details as given in this cohort profile.

  16. Fracture Risk in Relation to Serum 25-Hydroxyvitamin D and Physical Activity: Results from the EPIC-Norfolk Cohort Study

    PubMed Central

    Julian, Cristina; Lentjes, Marleen A. H.; Huybrechts, Inge; Wareham, Nick; Khaw, Kay-Tee

    2016-01-01

    Vitamin D deficiency and physical inactivity have been associated with bone loss and fractures, but their combined effect has scarcely been studied either in younger or older adults. Therefore, we aimed to assess the associations between physical activity, age and 25-hydroxyvitamin D (25(OH)D) status separately and in combination with the incidence of fracture risk in the EPIC-Norfolk cohort study. Baseline (1993–1998) self-reported physical activity and serum 25(OH)D concentrations at follow-up (1998–2000) were collected in 14,624 men and women (aged 42–82 y between 1998 and 2000). Fracture incidence was ascertained up to March 2015. Cox proportional hazard model was used to determine HRs of fractures by plasma 25(OH)D (<30, 30 to <50, 50 to <70, 70 to <90, >90 nmol/L), age (<65 y and >65 y) and physical activity (inactive and active) categories, by follow-up time per 20 nmol/L increase in serum 25(OH)D and to explore age-25(OH)D and physical activity-25(OH)D interactions. The age-, sex-, and month-adjusted HRs (95% CIs) for all fractures (1183 fractures) by increasing vitamin D category were not significantly different. With additional adjustment for body mass index, smoking status, alcohol intake, supplement use and history of fractures, the fracture risk was 29% lower in those participants with 50 to 70 nmol/L compared with those in the lowest quintile (<30 nmol/L). Physical inactivity based on a single baseline assessment was not associated with fracture risk. Vitamin D status appeared inversely related to fractures in middle aged adults. In older adults, the relationship between vitamin D status and fracture risk was observed to be J-shaped. Clinical and public health practice in vitamin D supplementation could partially explain these findings, although definitive conclusions are difficult due to potential changes in exposure status over the long follow up period. PMID:27749911

  17. Convection and Easterly Wave Structure Observed in the Eastern Pacific Warm-Pool during EPIC-2001

    NASA Technical Reports Server (NTRS)

    Peterson, Walter A.; Cifelli, R.; Boccippio, D.; Rutledge, S. A.; Fairall, C. W.; Arnold, James E. (Technical Monitor)

    2002-01-01

    During September-October 2001, the East Pacific Investigation of Climate Processes in the Coupled Ocean-Atmosphere System (EPIC-2001) ITCZ field campaign focused on studies of deep convection in the warm-pool region of the East Pacific. In addition to the TAO mooring array, observational platforms deployed during the field phase included the NOAA ship RN Ronald H. Brown, the NSF ship RN Horizon, and the NOAA P-3 and NCAR C-130 aircraft. This study combines C-band Doppler radar, rawinsonde, and surface heat flux data collected aboard the RN Brown to describe ITCZ convective structure and rainfall statistics in the eastern Pacific as a function of 3-5 day easterly wave phase. Three distinct easterly wave passages occurred during EPIC-2001. Wind and thermodynamic data reveal that the wave trough axes exhibited positively correlated U and V winds and a slight westward phase tilt with height. A relatively strong (weak) northeasterly deep tropospheric shear followed the trough (ridge) axis. Temperature and humidity perturbations exhibited mid-to upper level cooling (warming) and drying (moistening) in the northerly (trough and southerly) phase. At low levels warming (cooling) occurred in the northerly (southerly) phase with little change in the relative humidity, though mixed layer mixing ratios were larger during the northerly phase. When composited, radar, sounding, lightning and surface heat flux observations suggest the following systematic behavior as a function of wave phase: approximately zero to one quarter wavelength ahead of (behind) the wave trough in northerly (southerly) flow, larger (smaller) CAPE, lower (higher) CIN, weaker (stronger) tropospheric shear, higher (lower) conditional mean rain rates, higher (lower) lightning flash densities, and more (less) robust convective vertical structure occurred. Latent and sensible heat fluxes reached a minimum in the northerly phase and then increased through the trough, reaching a peak during the ridge phase

  18. A Client/Server Architecture for Supporting Science Data Using EPICS Version 4

    SciTech Connect

    Dalesio, Leo

    2015-04-21

    The Phase 1 grant that serves as a precursor to this proposal, prototyped complex storage techniques for high speed structured data that is being produced in accelerator diagnostics and beam line experiments. It demonstrates the technologies that can be used to archive and retrieve complex data structures and provide the performance required by our new accelerators, instrumentations, and detectors. Phase 2 is proposed to develop a high-performance platform for data acquisition and analysis to provide physicists and operators a better understanding of the beam dynamics. This proposal includes developing a platform for reading 109 MHz data at 10 KHz rates through a multicore front end processor, archiving the data to an archive repository that is then indexed for fast retrieval. The data is then retrieved from this data archive, integrated with the scalar data, to provide data sets to client applications for analysis, use in feedback, and to aid in identifying problem with the instrumentation, plant, beam steering, or model. This development is built on EPICS version 4 , which is being successfully deployed to implement physics applications. Through prior SBIR grants, EPICS version 4 has a solid communication protocol for middle layer services (PVAccess), structured data representation and methods for efficient transportation and access (PVData), an operational hierarchical record environment (JAVA IOC), and prototypes for standard structured data (Normative Types). This work was further developed through project funding to successfully deploy the first service based physics application environment with demonstrated services that provide arbitrary object views, save sets, model, lattice, and unit conversion. Thin client physics applications have been developed in Python that implement quad centering, orbit display, bump control, and slow orbit feedback. This service based architecture has provided a very modular and robust environment that enables commissioning teams

  19. Rare Earth Element Compositions of Chlorite-rich Hydrothermal Sediments in the middle Okinawa Trough, East China Sea

    NASA Astrophysics Data System (ADS)

    Shao, H.; Yang, S.; Humphris, S. E.; Cai, D.; Wang, Q.

    2015-12-01

    Rare earth elements (REEs) have been used as powerful tracers in the study of hot fluid-rock reaction in hydrothermal system. However, the behavior of the REEs during interaction of hydrothermal solution with rocks remains to be clarified more quantitatively. The Okinawa Trough (OT), located in the East Asian continental margin, is characterized by thick terrigenous sediment and ubiquitous volcanic-hydrothermal activities. In this study, the sediments collected during IODP Expedition 331 to the mid-OT were determined for mineralogical and REEs as well as Nd isotopic compositions, aiming to investigate the geochemical behavior of REEs during hydrothermal processes. All samples were separated into bulk and clay-size (˂ 2 μm) fractions and pretreated by 1N HCl to remove carbonate and other unstable components. The hydrothermal sediments in the mid-OT is dominated by Mg-rich chlorite based on the XRD analysis, especially the clay-size fraction comprising pure chlorite. The clay-size samples bear different mineralogical and geochemical compositions between the upper and lower parts in this hydrothermal area. All hydrothermal samples are relatively enriched in HREEs in the residues. The upper clays have higher values of δEu and (La/Yb)N as well as LREEs concentration than the lower part, while the bulk samples have weak REE differentiation. In the 1N HCl leachates, the concentrations of REEs in the bulk samples are higher than in the clays in the lower part but LREEs are obviously enriched in the upper clays. We infer that the grain size may be an important factor controlling the behavior of REEs in the mid-OT hydrothermal system. Both bulk and clay samples show negative Eu anomalies relative to chondrite, similar as the detrital sediments and volcanic rocks. This study confirms the hypothesis that HREEs patterns are constant throughout the system compatible with higher LREEs mobility as chlorine ion complexes in acidic solutions (Mills and Elderfield 1995; Douville

  20. Sedimentation in the Southern Okinawa Trough: enhanced particle scavenging and teleconnection between the Equatorial Pacific and western Pacific margins

    NASA Astrophysics Data System (ADS)

    Lee, Shih-Yu; Huh, Chih-An; Su, Chih-Chieh; You, Chen-Feng

    2004-11-01

    Owing to its location, geomorphology and hydrodynamic conditions, the southernmost part of the Southern Okinawa Trough (SOT) acts like an efficient receptacle for sediments from Taiwan and the East China Sea shelf. The high sediment flux coupled with the passage, bifurcation, upwelling, swirling and detour of Kuroshio in the SOT area result in intense particle scavenging, with sedimentary inventories of 210Pb and 239, 240Pu far greater than expected from local atmospheric input and in situ water column production. The unusually high inventories, as well as the deposition history of Pu isotopes must be explained by advective transport of Pu westward from the Marshall Islands, the largest source of Pu in the Pacific, by the North Equatorial Current (NEC) followed by northward transport of Kuroshio to the SOT area. The high sedimentation rate in the SOT area enabled us to differentiate the subsurface peak of 239, 240Pu resulting from the global fallout maximum in AD 1963 and the subsurface maximum of 240Pu/239Pu caused by close-in fallout from neutron-rich thermonuclear tests conducted by the US during AD 1952-1954 at the Enewetak and Bikini Atolls. The vertical offset between the subsurface peaks of 239, 240Pu and 240Pu/239Pu in sediments suggests that deposition of the 240Pu/239Pu maximum preceded that of the 239, 240Pu maximum by 3-5 yr and that the transit time of the 240Pu-enriched Pu from its source (at ∼12°N, 162°E) to the SOT area is ∼6 yr. The mean velocity of NEC thus calculated is ∼0.022 m s-1. The present is the key to the past. This study reveals teleconnection between the Equatorial Pacific and the western Pacific margins and suggests that ODP and IMAGES cores recently collected from the SOT area holds great promise for the reconstruction of high-resolution paleoceanographic records along the trajectories of NEC and Kuroshio.

  1. Intake estimation of total and individual flavan-3-ols, proanthocyanidins and theaflavins, their food sources and determinants in the European Prospective Investigation into Cancer and Nutrition (EPIC) study.

    PubMed

    Knaze, Viktoria; Zamora-Ros, Raul; Luján-Barroso, Leila; Romieu, Isabelle; Scalbert, Augustin; Slimani, Nadia; Riboli, Elio; van Rossum, Caroline T M; Bueno-de-Mesquita, H Bas; Trichopoulou, Antonia; Dilis, Vardis; Tsiotas, Konstantinos; Skeie, Guri; Engeset, Dagrun; Quirós, J Ramón; Molina, Esther; Huerta, José María; Crowe, Francesca; Wirfäl, Elisabet; Ericson, Ulrika; Peeters, Petra H M; Kaaks, Rudolf; Teucher, Birgit; Johansson, Gerd; Johansson, Ingegerd; Tumino, Rosario; Boeing, Heiner; Drogan, Dagmar; Amiano, Pilar; Mattiello, Amalia; Khaw, Kay-Tee; Luben, Robert; Krogh, Vittorio; Ardanáz, Eva; Sacerdote, Carlotta; Salvini, Simonetta; Overvad, Kim; Tjønneland, Anne; Olsen, Anja; Boutron-Ruault, Marie-Christine; Fagherazzi, Guy; Perquier, Florence; González, Carlos A

    2012-09-28

    Epidemiological studies suggest health-protective effects of flavan-3-ols and their derived compounds on chronic diseases. The present study aimed to estimate dietary flavan-3-ol, proanthocyanidin (PA) and theaflavin intakes, their food sources and potential determinants in the European Prospective Investigation into Cancer and Nutrition (EPIC) calibration cohort. Dietary data were collected using a standardised 24 h dietary recall software administered to 36 037 subjects aged 35-74 years. Dietary data were linked with a flavanoid food composition database compiled from the latest US Department of Agriculture and Phenol-Explorer databases and expanded to include recipes, estimations and retention factors. Total flavan-3-ol intake was the highest in UK Health-conscious men (453·6 mg/d) and women of UK General population (377·6 mg/d), while the intake was the lowest in Greece (men: 160·5 mg/d; women: 124·8 mg/d). Monomer intake was the highest in UK General population (men: 213·5 mg/d; women: 178·6 mg/d) and the lowest in Greece (men: 26·6 mg/d in men; women: 20·7 mg/d). Theaflavin intake was the highest in UK General population (men: 29·3 mg/d; women: 25·3 mg/d) and close to zero in Greece and Spain. PA intake was the highest in Asturias (men: 455·2 mg/d) and San Sebastian (women: 253 mg/d), while being the lowest in Greece (men: 134·6 mg/d; women: 101·0 mg/d). Except for the UK, non-citrus fruits (apples/pears) were the highest contributors to the total flavan-3-ol intake. Tea was the main contributor of total flavan-3-ols in the UK. Flavan-3-ol, PA and theaflavin intakes were significantly different among all assessed groups. This study showed heterogeneity in flavan-3-ol, PA and theaflavin intake throughout the EPIC countries.

  2. Microbial Community Stratification Controlled by the Subseafloor Fluid Flow and Geothermal Gradient at the Iheya North Hydrothermal Field in the Mid-Okinawa Trough (Integrated Ocean Drilling Program Expedition 331)

    PubMed Central

    Breuker, Anja; Schippers, Axel; Nishizawa, Manabu; Ijiri, Akira; Hirai, Miho; Takaki, Yoshihiro; Sunamura, Michinari; Urabe, Tetsuro; Nunoura, Takuro; Takai, Ken

    2014-01-01

    The impacts of lithologic structure and geothermal gradient on subseafloor microbial communities were investigated at a marginal site of the Iheya North hydrothermal field in the Mid-Okinawa Trough. Subsurface marine sediments composed of hemipelagic muds and volcaniclastic deposits were recovered through a depth of 151 m below the seafloor at site C0017 during Integrated Ocean Drilling Program Expedition 331. Microbial communities inferred from 16S rRNA gene clone sequencing in low-temperature hemipelagic sediments were mainly composed of members of the Chloroflexi and deep-sea archaeal group. In contrast, 16S rRNA gene sequences of marine group I Thaumarchaeota dominated the microbial phylotype communities in the coarse-grained pumiceous gravels interbedded between the hemipelagic sediments. Based on the physical properties of sediments such as temperature and permeability, the porewater chemistry, and the microbial phylotype compositions, the shift in the physical properties of the sediments is suggested to induce a potential subseafloor recharging flow of oxygenated seawater in the permeable zone, leading to the generation of variable chemical environments and microbial communities in the subseafloor habitats. In addition, the deepest section of sediments under high-temperature conditions (∼90°C) harbored the sequences of an uncultivated archaeal lineage of hot water crenarchaeotic group IV that may be associated with the high-temperature hydrothermal fluid flow. These results indicate that the subseafloor microbial community compositions and functions at the marginal site of the hydrothermal field are highly affected by the complex fluid flow structure, such as recharging seawater and underlying hydrothermal fluids, coupled with the lithologic transition of sediments. PMID:25063666

  3. Microbial community stratification controlled by the subseafloor fluid flow and geothermal gradient at the Iheya North hydrothermal field in the Mid-Okinawa Trough (Integrated Ocean Drilling Program Expedition 331).

    PubMed

    Yanagawa, Katsunori; Breuker, Anja; Schippers, Axel; Nishizawa, Manabu; Ijiri, Akira; Hirai, Miho; Takaki, Yoshihiro; Sunamura, Michinari; Urabe, Tetsuro; Nunoura, Takuro; Takai, Ken

    2014-10-01

    The impacts of lithologic structure and geothermal gradient on subseafloor microbial communities were investigated at a marginal site of the Iheya North hydrothermal field in the Mid-Okinawa Trough. Subsurface marine sediments composed of hemipelagic muds and volcaniclastic deposits were recovered through a depth of 151 m below the seafloor at site C0017 during Integrated Ocean Drilling Program Expedition 331. Microbial communities inferred from 16S rRNA gene clone sequencing in low-temperature hemipelagic sediments were mainly composed of members of the Chloroflexi and deep-sea archaeal group. In contrast, 16S rRNA gene sequences of marine group I Thaumarchaeota dominated the microbial phylotype communities in the coarse-grained pumiceous gravels interbedded between the hemipelagic sediments. Based on the physical properties of sediments such as temperature and permeability, the porewater chemistry, and the microbial phylotype compositions, the shift in the physical properties of the sediments is suggested to induce a potential subseafloor recharging flow of oxygenated seawater in the permeable zone, leading to the generation of variable chemical environments and microbial communities in the subseafloor habitats. In addition, the deepest section of sediments under high-temperature conditions (∼90°C) harbored the sequences of an uncultivated archaeal lineage of hot water crenarchaeotic group IV that may be associated with the high-temperature hydrothermal fluid flow. These results indicate that the subseafloor microbial community compositions and functions at the marginal site of the hydrothermal field are highly affected by the complex fluid flow structure, such as recharging seawater and underlying hydrothermal fluids, coupled with the lithologic transition of sediments.

  4. A good Darwinian? Winwood Reade and the making of a late Victorian evolutionary epic.

    PubMed

    Hesketh, Ian

    2015-06-01

    In 1871 the travel writer and anthropologist W. Winwood Reade (1838-1875) was inspired by his correspondence with Darwin to turn his narrow ethnological research on West African tribes into the broadest history imaginable, one that would show Darwin's great principle of natural selection at work throughout the evolutionary history of humanity, stretching back to the origins of the universe itself. But when Martyrdom of Man was published in 1872, Reade confessed that Darwin would not likely find him a very good Darwinian, as he was unable to show that natural selection was anything more than a secondary law that arranges all details. When it came to historicising humans within the sweeping history of all creation, Reade argued that the primary law was that of development, a less contentious theory of human evolution that was better suited to Reade's progressive and teleological history of life. By focussing on the extensive correspondence between Reade and Darwin, this paper reconstructs the attempt to make an explicitly Darwinian evolutionary epic in order to shed light on the moral and aesthetic demands that worked to give shape to Victorian efforts to historicise humans within a vastly expanding timeframe.

  5. Genetic Affinity of the Bhil, Kol and Gond Mentioned in Epic Ramayana.

    PubMed

    Chaubey, Gyaneshwer; Kadian, Anurag; Bala, Saroj; Rao, Vadlamudi Raghavendra

    2015-01-01

    Kol, Bhil and Gond are some of the ancient tribal populations known from the Ramayana, one of the Great epics of India. Though there have been studies about their affinity based on classical and haploid genetic markers, the molecular insights of their relationship with other tribal and caste populations of extant India is expected to give more clarity about the the question of continuity vs. discontinuity. In this study, we scanned >97,000 of single nucleotide polymorphisms among three major ancient tribes mentioned in Ramayana, namely Bhil, Kol and Gond. The results obtained were then compared at inter and intra population levels with neighboring and other world populations. Using various statistical methods, our analysis suggested that the genetic architecture of these tribes (Kol and Gond) was largely similar to their surrounding tribal and caste populations, while Bhil showed closer affinity with Dravidian and Austroasiatic (Munda) speaking tribes. The haplotype based analysis revealed a massive amount of genome sharing among Bhil, Kol, Gond and with other ethnic groups of South Asian descent. On the basis of genetic component sharing among different populations, we anticipate their primary founding over the indigenous Ancestral South Indian (ASI) component has prevailed in the genepool over the last several thousand years.

  6. Genetic Affinity of the Bhil, Kol and Gond Mentioned in Epic Ramayana

    PubMed Central

    Chaubey, Gyaneshwer; Kadian, Anurag; Bala, Saroj; Rao, Vadlamudi Raghavendra

    2015-01-01

    Kol, Bhil and Gond are some of the ancient tribal populations known from the Ramayana, one of the Great epics of India. Though there have been studies about their affinity based on classical and haploid genetic markers, the molecular insights of their relationship with other tribal and caste populations of extant India is expected to give more clarity about the the question of continuity vs. discontinuity. In this study, we scanned >97,000 of single nucleotide polymorphisms among three major ancient tribes mentioned in Ramayana, namely Bhil, Kol and Gond. The results obtained were then compared at inter and intra population levels with neighboring and other world populations. Using various statistical methods, our analysis suggested that the genetic architecture of these tribes (Kol and Gond) was largely similar to their surrounding tribal and caste populations, while Bhil showed closer affinity with Dravidian and Austroasiatic (Munda) speaking tribes. The haplotype based analysis revealed a massive amount of genome sharing among Bhil, Kol, Gond and with other ethnic groups of South Asian descent. On the basis of genetic component sharing among different populations, we anticipate their primary founding over the indigenous Ancestral South Indian (ASI) component has prevailed in the genepool over the last several thousand years. PMID:26061398

  7. Communication Patterns in the Perioperative Environment During Epic Electronic Health Record System Implementation.

    PubMed

    Friend, Tynan H; Jennings, Samantha J; Levine, Wilton C

    2017-02-01

    In April 2016, Massachusetts General Hospital (MGH) went live with the Epic electronic health records (EHR) system, replacing a variety of EHRs that previously existed in different departments throughout the hospital. At the time of implementation, the Vocera® Badge Communication System, a wireless hands-free communication device distributed to perioperative team members, had increased perioperative communication flow and efficiency. As a quality improvement effort to better understand communication patterns during an EHR go-live, we monitored our Vocera call volume and user volume before, during and after our go-live. We noticed that call volume and user volume significantly increased during our immediate go-live period and quickly returned to baseline levels. We also noticed that call volume increased during periods of unplanned EHR downtime long after our immediate go-live period. When planning the implementation of a new EHR, leadership must plan for and support this critical communication need at the time of the go-live and must also be aware of these needs during unplanned downtime.

  8. Association between lifestyle factors and quality-adjusted life years in the EPIC-NL cohort.

    PubMed

    Fransen, Heidi P; May, Anne M; Beulens, Joline W J; Struijk, Ellen A; de Wit, G Ardine; Boer, Jolanda M A; Onland-Moret, N Charlotte; Hoekstra, Jeljer; van der Schouw, Yvonne T; Bueno-de-Mesquita, H Bas; Peeters, Petra H M

    2014-01-01

    The aim of our study was to relate four modifiable lifestyle factors (smoking status, body mass index, physical activity and diet) to health expectancy, using quality-adjusted life years (QALYs) in a prospective cohort study. Data of the prospective EPIC-NL study were used, including 33,066 healthy men and women aged 20-70 years at baseline (1993-7), followed until 31-12-2007 for occurrence of disease and death. Smoking status, body mass index, physical activity and adherence to a Mediterranean-style diet (excluding alcohol) were investigated separately and combined into a healthy lifestyle score, ranging from 0 to 4. QALYs were used as summary measure of healthy life expectancy, combining a person's life expectancy with a weight for quality of life when having a chronic disease. For lifestyle factors analyzed separately the number of years living longer in good health varied from 0.12 year to 0.84 year, after adjusting for covariates. A combination of the four lifestyle factors was positively associated with higher QALYs (P-trend <0.0001). A healthy lifestyle score of 4 compared to a score of 0 was associated with almost a 2 years longer life in good health (1.75 QALYs [95% CI 1.37, 2.14]).

  9. Programming PLCS under EPICS at the SNS Project : Further Experiences in Collaboration

    SciTech Connect

    P. A. Gurd; W. H. Strong; J. D. Creel

    2003-10-01

    The Spallation Neutron Source (SNS) is an accelerator-based neutron source being built in Tennessee by a partnership of six national laboratories. The control system components for the SNS were produced by personnel at the collaborating laboratories, by vendors of the equipment, and by commercial contractors. A number of different approaches were used to provide the programming for both the programmable logic controllers (PLCs) and the input-output controllers (IOCs) which were all based on the Experimental Physics and Industrial Control System (EPICS). For conventional facilities, both the PLCs and the IOCs were programmed under a commercial contract. The PLCs for the high power radio frequency system (HPRF) were programmed by the vendors of the equipment, while the IOCs were programmed by the collaborating laboratory. Finally, while the IOCs for the cryogenic systems were programmed at Oak Ridge, three different approaches were used to produce the PLC programming: some were programmed at Oak Ridge, some at TJNAF, and some at vendor sites. This paper discusses the status of the PLCs in the control system and the integration challenges encountered in the various approaches.

  10. Size Distributions and Formation Pathways of Organic and Inorganic Constituents in Spring Aerosols from Okinawa Island in the Western North Pacific Rim: An Outflow Region of Asian Dusts

    NASA Astrophysics Data System (ADS)

    Deshmukh, D. K.; Lazaar, M.; Kawamura, K.; Kunwar, B.; Tachibana, E.; Boreddy, S. K. R.

    2015-12-01

    Size-segregated aerosols (9-stages) were collected at Okinawa Island in the western North Pacific Rim in spring 2008. The samples were analyzed for diacids (C2-C12), ω-oxoacids (ωC2-ωC9), a-dicarbonyls (C2-C3), organic carbon (OC), water-soluble OC (WSOC) and major ions to understand the sources and atmospheric processes in the outflow region of Asian pollutants. The molecular distribution of diacids showed the predominance of oxalic acid (C2) followed by malonic and succinic acids in all the size-segregated aerosols. ω-Oxoacids showed the predominance of glyoxylic acid (ωC2) whereas glyoxal (Gly) was more abundant than methylglyoxal in all the sizes. The abundant presence of sulfate as well as phthalic and adipic acids in Okinawa aerosols suggested a significant contribution of anthropogenic sources in East Asia via long-range atmospheric transport. Diacids (C2-C5), ωC2 and Gly as well as WSOC and OC peaked at 0.65-1.1 µm in fine mode whereas azelaic (C9) and 9-oxononanoic (ωC9) acids peaked at 3.3-4.7 µm in coarse mode. Sulfate and ammonium are enriched in fine mode whereas sodium and chloride are in coarse mode. An important mechanism for the formation of these organic species in Okinawa aerosols is probably gas phase oxidation of VOCs and subsequent in-cloud processing during long-range transport. Their characteristics size distribution implies that fine particles enriched with these organic and inorganic species could act as CCN to develop the cloud cover over the western North Pacific. The major peak of C9 and ωC9 on coarse mode suggest that they are produced by photooxidation of unsaturated fatty acids mainly derived from phytoplankton via heterogeneous reactions on sea spray particles. This study demonstrates that anthropogenic aerosols emitted from East Asia have significant influence on the compositions of organic and inorganic aerosols in the western North Pacific Rim.

  11. Long-term observation of water-soluble chemical components and acid-digested metals in the total suspended particles collected at Okinawa, Japan

    NASA Astrophysics Data System (ADS)

    Handa, D.; Okada, K.; Kuroki, Y.; Nakama, Y.; Nakajima, H.; Somada, Y.; Ijyu, M.; Azechi, S.; Oshiro, Y.; Nakaema, F.; Miyagi, Y.; Arakaki, T.; Tanahara, A.

    2011-12-01

    The economic growth and population increase in recent Asia have been increasing air pollution. Emission rate of air pollutants from Asia, in particular oxides of nitrogen, surpassed those from North America and Europe and should continue to exceed them for decades. Okinawa Island is situated approximately 1500 km south of Tokyo, Japan, 2000 km southeast of Beijing, China, and 1000 km south of South Korea. Its location is ideal in observing East Asia's air quality because maritime air mass prevails during summer, while continental air mass dominates during fall, winter, and spring. The maritime air mass data can be seen as background clean air and can be compared with continental air masses which have been affected by anthropogenic activities. We collected total suspended particles (TSP) on quartz filters by using a high volume air sampler at the Cape Hedo Atmosphere and Aerosol Monitoring Station (CHAAMS), Okinawa, Japan during August 2005 and August 2010. Sampling duration was one week for each sample. We determined the concentrations of water-soluble anions, cations, water-soluble organic carbon (WSOC) and acid-digested metals in TSP samples using ion chromatography, atomic absorption spectrometry, total organic carbon analyzer and Inductively Coupled Plasma Mass spectrometry (ICP-MS), respectively. Seasonal variation of water-soluble chemical components and acid-digested metals showed that the concentrations were the lowest in summer, higher in fall and winter, and the highest in spring. When air mass came from Asian continent, the concentrations of water-soluble chemical components and acid-digested metals were much higher compared to the other directions, suggesting long-range transport of air pollutants from Asian continent. Also, when the air mass came from Asian continent (75-100% dominant), the mean concentrations of non-sea salt sulfate and nitrate increased ca. 1.8 times and ca. 3.7 times, respectively between 2005 and 2010, and the ratio of nitrate to

  12. IODP Exp 331: Iron-oxidizing Bacteria from the Okinawa Trough Deep Subsurface Biosphere

    NASA Astrophysics Data System (ADS)

    Moyer, C. L.; McAllister, S. M.

    2011-12-01

    Communities of Fe-oxidizing Bacteria (FeOB) are common at sites of hydrothermal venting and are known to form complex communities in microbial mats, hydrothermal sediments, and borehole fluids. Studies at sites around the Pacific Ocean have found the Zetaproteobacteria to be dominant members of these FeOB communities. Preliminary culture-independent analyses indicate that borehole fluids from the deep subsurface may support several novel and distinct Zetaproteobacteria phylotypes (McAllister et al., 2011). Sampling from the deep subsurface at the Iheya North hydrothermal field has provided an opportunity to explore the microbial biodiversity of this unique subsurface habitat. Onboard enrichment experiments for FeOB were carried out at several sites over a wide range of depths as part of IODP Expedition 331. Enrichment experiments were carried out in both microaerophilic and anaerobic environments, with oxygen and nitrate as terminal electron acceptors, respectively. Although tested for the presence of FeOB from 0.23 to 42.45 meters below the seafloor (mbsf), Site C0014 showed little growth except for in the top half meter of hydrothermally unaltered, weakly oxidized sediment. Site C0015, which was diffusely venting and had a relatively low-temperature (~15°C), showed growth throughout the hole with both microaerophilic and anaerobic conditions to a depth of nine mbsf. Growth at this low-temperature site is consistent with previous studies of iron-oxidizing communities, and may correlate best with the borehole community at the Southern Mariana Trough (Kato et al., 2009). At Site C0017, a potential zone of recharge flow (down-welling of cold oxygenated seawater) was traversed from ~26 to 35 mbsf, and at the top of this zone the microaerophilic enrichment experiments showed growth. Growth in this recharge zone represents the deepest subsurface cultivation of FeOB to date, and may lend insight into the colonization of low-temperature vent systems via subsurface fluid

  13. Isolation and purification of the major photosynthetic antenna, fucoxanthin-Chl a/c protein, from cultured discoid germilings of the brown Alga, Cladosiphon okamuranus TOKIDA (Okinawa Mozuku).

    PubMed

    Fujii, Ritsuko; Kita, Mamiko; Iinuma, Yoshiro; Oka, Naohiro; Takaesu, Yuki; Taira, Tomonori; Iha, Masahiko; Cogdell, Richard J; Hashimoto, Hideki

    2012-03-01

    A chlorophyll c binding membrane intrinsic light-harvesting complex, the fucoxanthin-chlorophyll a/c protein (FCP), was isolated from cultured discoid germilings of an edible Japanese brown alga, Cladosiphon (C.) okamuranus TOKIDA (Okinawa Mozuku in Japanese). The discoid germiling is an ideal source of brown algal photosynthetic pigment-protein complexes in terms of its size and easiness of cultivation on a large scale. Ion-exchange chromatography was crucial for the purification of FCP from solubilized thylakoid proteins. The molecular weight of the purified FCP assembly was estimated to be ~56 kDa using blue native-PAGE. Further subunit analyses using 2D-PAGE revealed that the FCP assembled as a trimer consisting of two distinguishable subunits having molecular weights of 18.2 (H) and 17.5 (L) kDa. Fluorescence and fluorescence-excitation spectra confirmed that the purified FCP assembly was functionally intact.

  14. A new genus and two new species of Peltogastridae (Crustacea: Cirripedia: Rhizocephala) parasitizing hermit crabs from Okinawa Island (Ryukyu Archipelago, Japan), and their DNA-barcodes.

    PubMed

    Yoshida, Ryuta; Osawa, Masayuki; Hirose, Mamiko; Hirose, Euichi

    2011-11-01

    A new genus and two new species of Peltogastridae, Peltogaster postica sp. nov. and Ommatogaster nana gen. et sp. nov., are described from Okinawa Island, Ryukyu Islands, southwestern Japan. The two new rhizocephalans were found to be parasitic on the estuarine hermit crabs, Pagurus minutus Hess, 1865 and Diogenes leptocerus Forest, 1956, respectively. Peltogaster postica sp. nov. is allied to P. curvata Kossmann, 1874, P. paguri Rathke, 1842 , and P. reticulata Shiino, 1943 , but is distinguished by its relative length and internal and external structures of the mature externa. Ommatogaster gen. nov. is established for the present new species O. nana based on the morphologies of the visceral mass of the externa and the presence of a nauplius eye in the larvae. Partial COI sequences were obtained from the two new species and one known species, Dipterosaccus indicus Van Kampen and Boschma, 1925, to test the possible usefulness of the sequences as tags for species identification.

  15. Peltogasterella sensuru n. sp. (Crustacea: Cirripedia: Rhizocephala) from off Okinawa Island (Ryukyu Archipelago, Japan) with remarks on its single brood externae.

    PubMed

    Yoshida, Ryuta; Hirose, Mamiko; Hirose, Euichi

    2015-09-01

    Peltogasterella sensuru n. sp. infests Pagurixus hermit crabs inhabiting rocky shores off Okinawa Island (Ryukyu Archipelago, Japan). This species is clearly distinguishable from Peltogasterella gracilis (Boschma, 1927): the stalk emerges from the middle part of the externa in the present species and P. sulcata (Lilljeborg, 1859), while the stalk in P. gracilis emerges from the posterior end of the externae. The new species differs from P. sulcata based on the morphology of the mantle aperture. Peltogasterella sensuru n. sp. repeatedly produces single brood externae that have not been previously observed in species belonging to the suborder Kentrogonida Delage, 1884. We also determined partial sequences of the COI gene and 16S rRNA gene of the new species for use as molecular markers for species identification.

  16. Three new species of Hatschekia Poche, 1902 (Copepoda: Siphonostomatoida: Hatschekiidae) parasitic on Abalistes filamentosus (Pisces: Tetraodontiformes: Balistidae) from off Okinawa, Japan.

    PubMed

    Uyeno, Daisuke; Nagasawa, Kazuya

    2009-11-01

    Three new species of the copepod genus Hatschekia Poche, 1902, H. lima n. sp., H. cylindrus n. sp. and H. sunaoi n. sp., are described from the gill filaments of a triggerfish, Abalistes filamentosus Matsuura & Yoshino, caught off the Ryukyu Islands, Okinawa, Japan. These new species share an unusual morphological character, i.e. four stout posterior spines on the intercoxal sclerites of legs 1 and 2. H. lima n. sp. differs from its congeners in having a robust inner lobe on the maxillule and leg 3 with a swollen basal lobe. H. cylindrus n. sp. is distinguishable from its congeners by having a cephalothorax fused to the trunk and a double-semicircular chitinous frame. H. sunaoi n. sp. is characterised by leg 3 with a swollen basal lobe and an oval cephalothorax.

  17. Additional record of Rayllianassa amboinensis (de Man, 1888) from Japan, and description of a new species from Okinawa Island, Ryukyu Islands (Crustacea: Decapoda: Axiidea: Callianassidae).

    PubMed

    Komai, Tomoyuki; Fujita, Yoshihisa; Maenosono, Tadafumi

    2014-07-14

    Two species referred to the callianassid ghost shrimp genus Rayllianassa Komai & Tachikawa, 2008 are reported herewith. Additional locality records from Japan are provided for R. amboinensis (de Man, 1888), and the synonymy of Callianassa ngochoae Sakai, 1999 with R. amboinensis is discussed. It is shown that R. amboinensis is associated with sponges or alcyonacean soft corals, representing unusual habitats for callianassids. Rayllianassa rudisulcus n. sp. is described on the basis of a single ovigerous female from shallow soft sediment in Ohura Bay, Okinawa Island, Ryukyu Islands. The new species is distinguished from R. amboinensis by the absence of a dorsal oval on the carapace, the antennal peduncle being longer than the antennular peduncle, and the different shape of the third maxilliped. The status of Rayllianassa is also briefly discussed.

  18. A new species of parasitic copepod of the genus Hatschekia Poche, 1902 (Siphonostomatoida: Hatschekiidae) from filefishes (Pisces: Tetraodontiformes: Monacanthidae) from off Okinawa, Japan.

    PubMed

    Uyeno, Daisuke; Nagasawa, Kazuya

    2010-05-01

    Hatschekia khahajya n. sp. is described from the gill filaments of two monacanthid fishes, Cantherhines dumerilii (Hollard) and Amanses scopes (Cuvier), caught off Okinawa, Japan. The new species can be distinguished from its congeners by the possession of the following combination of characters: cephalothorax length/trunk length ratio greater than 0.40; cephalothorax with a pair of lateral bars on the chitinous ring and a posterior pair of surface ridges; trunk with a bifurcate chitinous frame extending over its anterior third and with well-developed posterior lobes that extend beyond the abdomen; and four processes plus two spinular rows on the distal margin of the intercoxal sclerite of legs 1 and 2.

  19. Analyses of Heavy Metal Contents in the Bulk Atmospheric Aerosols Simultaneously Collected at Okinawa Archipelago, Japan by Using X-ray fluorescence spectrometric method (XRF)

    NASA Astrophysics Data System (ADS)

    Oshiro, Y.; ITOH, A.; Azechi, S.; Somada, Y.; Handa, D.; Miyagi, Y.; Arakaki, T.; Tanahara, A.

    2012-12-01

    We studied heavy metal contents of bulk atmospheric aerosols using an X-ray fluorescence spectrometric method (XRF). The XRF method enables us to analyze heavy metal contents in the bulk aerosols rapidly without any chemical pretreatments. We used an energy dispersive X-ray fluorescence spectrometer that is compact and portable. We prepared several different amounts of standard reference materials (referred to "SRM", NIES No.28 of Japanese National Institute of Environmental Studies) on quartz filters for calibration curves in two different methods; 1) water-insoluble materials were collected after dispersing SRM in pure water and filtered with the quartz filters ("wet method"), and 2) SRM was dispersed in air in the plastic container and the aerosols were collected by using the low-volume air sampler ("dry method"). Good linear relationships between X-ray intensity and amount of aerosols on the filter were seen in the following 9 metals; Al, K, Ti, V, Fe, Ni, Rb, Ba, and Pb (with wet method) and 12 metals; K, Ti, Fe, Ni, Rb, Ba, Pb, Sr, Ca, Mn, Zn, and Cu (with dry method). Furthermore, we evaluated quantitative responses of XRF method by comparing with the metal contents determined by inductively coupled plasma mass spectrometry (ICP-MS) and atomic absorption spectrometry (AAS) after acid-digestion. We then used XRF method to determine heavy metal contents in authentic atmospheric aerosols collected in Okinawa islands, Japan. We simultaneously collected bulk aerosol samples by using identical high-volume air samplers at 3 islands; Cape Hedo Atmospheric Aerosol Monitoring Station (CHAAMS, Okinawa island), Kume island (ca. 160 km south-west of CHAAMS), and Minami-Daitou island (ca. 320 km south-east of CHAAMS). We report and discuss spatial and temporal distribution of heavy metals determined by the XRF method in the bulk atmospheric aerosols collected at the three islands during June 2008 to June 2010, and for CHAAMS during June 2008 to October 2012.

  20. Community of arbuscular mycorrhizal fungi in a coastal vegetation on Okinawa island and effect of the isolated fungi on growth of sorghum under salt-treated conditions.

    PubMed

    Yamato, Masahide; Ikeda, Shiho; Iwase, Koji

    2008-07-01

    Community of arbuscular mycorrhizal (AM) fungi in a coastal vegetation on Okinawa island in Japan was examined. A sampling plot was established in a colony of Ipomoea pes-caprae (Convolvulaceae) on the beach in Tamagusuku, Okinawa Pref, in which eight root samples of I. pes-caprae and three root samples each of Vigna marina (Leguminosae) and Paspalum distichum (Poaceae) were collected. Partial 18S rDNA of AM fungi was amplified from the root samples by polymerase chain reaction (PCR) with primers NS31 and AM1. Restriction fragment length polymorphism analysis with HinfI and RsaI for cloned PCR products revealed that two types of Glomus sp., type A and type B, were dominant in the colony. Among them, the fungi of type A were especially dominant near the edge of the colony facing the sea. A phylogenetic analysis showed that the AM fungi of type B are closely related to Glomus intraradices and those of type A are nearly related to type B. From the sequence data, it was also found that type A was further divided into two types, type A1 and A2. One representative strain each of the three types, type A1, A2, and B, propagated from single spore each, was examined for the growth of sorghum (Sorghum bicolor) at three different salinity levels, 0, 100, and 200 mM NaCl. At the non-salt-treated condition, the type B fungus was the most effective on shoot growth enhancement of the host plant, whereas at the salt-treated conditions, the type A2 fungus was the most effective. An efficient suppression of Na + translocation into the shoot by the examined AM fungi was found. These results suggested that the AM fungi dominant near the sea are adapted to salt-stressed environment to alleviate the salt stress of host plants.

  1. Spatial and temporal behavior and acute ecotoxicological effects of Tributyltin (TBT) on coral reef and adjacent ecosystems around Okinawa Island, Japan.

    NASA Astrophysics Data System (ADS)

    Sheikh, M. A.; Higuchi, T.; Imo, T. S.; Fujimura, H.; Oomori, T.

    2007-12-01

    Spatial and temporal behavior of the tributyl tin (TBT) were investigated in the coastal areas around Okinawa Island, Japan. A seasonal monitoring study was conducted between February and October 2006. The effects of TBT on the carbon metabolisms (net production and calcification) on the intact coral-alga association Galaxea fascicularis were also investigated. Mean concentration of TBT (2.45 ng/L) found in the Manko estuary waters have exceeded some international permissible targets of waters quality guideline for TBT (1ng/L). The sediments in Manko estuary sediments can be considered lightly contaminated (0-20 ng/g dw) and Okukubi estuary as uncontaminated (below 3ng/g dw) with TBT. The seasonal concentration pattern of TBT at the Manko estuary was autumn > spring > summer > winter. The acute ecotoxicological results show that the photosynthesis rate and calcification rate were significantly reduced by 78 % and 72 % relative to the control (ANOVA, p<0.001) when corals were exposed to 5000 ng/LTBT, respectively. No significant effects (ANOVA, p>0.05) were observed when corals were exposed to 1000 ng/LTBT. The present study reports the occurrence and continuous input of TBT in the coastal areas around Okinawa Island, even 16 years after legal restriction of TBT usage in coastal waters was implemented by the Japanese Environmental Authorities. However, the nominal sensitive concentration of TBT that causes alteration of carbon metabolisms of coral within 96 hrs exposure are much higher than those recently found in the coral reef waters and adjacent ecosystems.

  2. Thermal design and analysis of a multi-stage 30 K radiative cooling system for EPIC

    NASA Astrophysics Data System (ADS)

    Chui, Talso; Bock, Jamie; Holmes, Warren; Raab, Jeff

    2010-09-01

    The Experimental Probe of Inflationary Cosmology (EPIC) is an implementation of the NASA Einstein Inflation Probe mission, to answer questions about the physics of Inflation in the early Universe by measuring the polarization of the Cosmic Microwave Background (CMB). The mission relies on a passive cooling system to cool the enclosure of a telescope to 30 K; a cryocooler then cools this enclosure to 18 K and the telescope to 4 K. Subsequently, an Adiabatic Demagnetization Refrigerator further cools a large Focal Plane to ˜100 mK. For this mission, the telescope has an aperture of 1.4 m, and the spacecraft's symmetry axis is oriented ˜45° relative to the direction of the sun. The spacecraft will be spun at ˜0.5 rpm around this axis, which then precesses on the sky at 1 rph. The passive system must both supply the necessary cooling power for the cryocooler and meet demanding temperature stability requirements. We describe the thermal design of a passive cooling system consisting of four V-groove radiators for shielding of solar radiation and cooling the telescope to 30 K. The design realizes loads of 20 and 68 mW at the 4 K and 18 K stages on the cooler, respectively. A lower cost option for reaching 40 K with three V-groove radiators is also described. The analysis includes radiation coupling between stages of the radiators and sunshields, and parasitic conduction in the bipod support, harnesses, and ADR leads. Dynamic effects are also estimated, including the very small variations in temperature due to the scan motion of the spacecraft.

  3. Retinal Nerve Fiber Layer Measures and Cognitive Function in the EPIC-Norfolk Cohort Study

    PubMed Central

    Khawaja, Anthony P.; Chan, Michelle P. Y.; Yip, Jennifer L. Y.; Broadway, David C.; Garway-Heath, David F.; Luben, Robert; Hayat, Shabina; Matthews, Fiona E.; Brayne, Carol; Khaw, Kay-Tee; Foster, Paul J.

    2016-01-01

    Purpose We examined the relationship between retinal nerve fiber layer (RNFL) thickness and cognitive function in a population of older British adults. Methods Participants of the European Prospective Investigation of Cancer (EPIC) Norfolk cohort study underwent ophthalmic and cognitive assessment. Measurements of RNFL thickness were made using the Heidelberg Retina Tomograph (HRT). Cognitive testing included a short form of the Mini-Mental State Examination (SF-MMSE), an animal naming task, a letter cancellation task, the Hopkins Verbal Learning Test (HVLT), the National Adult Reading Test (NART), and the Paired Associates Learning Test. Multivariable linear regression models were used to assess associations of RNFL thickness with cognitive test scores, adjusted for age, sex, education level, social class, visual acuity, axial length, and history of cataract surgery. Results Data were available from 5563 participants with a mean age of 67 years. A thicker HRT-derived RNFL thickness was associated with better scores for the SF-MMSE (0.06; 95% confidence interval [CI], [0.02, 0.10], P = 0.005), HVLT (0.16, 95% CI [0.03, 0.29]; P = 0.014), and NART (−0.24, 95% CI [−0.46, −0.02], P = 0.035). The associations of RNFL thickness with SF-MMSE and HVLT remained significant following further adjustment for NART. Conclusions We found a significant association between HRT-derived RNFL thickness and scores from cognitive tests assessing global function, recognition, learning, episodic memory, and premorbid intelligence. However, the associations were weak and not currently of predictive value. Further research is required to confirm and clarify the nature of these associations, and identify biological mechanisms. PMID:27092718

  4. EPICE-HIV: An Epidemiologic Cost-Effectiveness Model for HIV Treatment.

    PubMed

    Vandewalle, Björn; Llibre, Josep M; Parienti, Jean-Jacques; Ustianowski, Andrew; Camacho, Ricardo; Smith, Colette; Miners, Alec; Ferreira, Diana; Félix, Jorge

    2016-01-01

    The goal of this research was to establish a new and innovative framework for cost-effectiveness modeling of HIV-1 treatment, simultaneously considering both clinical and epidemiological outcomes. EPICE-HIV is a multi-paradigm model based on a within-host micro-simulation model for the disease progression of HIV-1 infected individuals and an agent-based sexual contact network (SCN) model for the transmission of HIV-1 infection. It includes HIV-1 viral dynamics, CD4+ T cell infection rates, and pharmacokinetics/pharmacodynamics modeling. Disease progression of HIV-1 infected individuals is driven by the interdependent changes in CD4+ T cell count, changes in plasma HIV-1 RNA, accumulation of resistance mutations and adherence to treatment. The two parts of the model are joined through a per-sexual-act and viral load dependent probability of disease transmission in HIV-discordant couples. Internal validity of the disease progression part of the model is assessed and external validity is demonstrated in comparison to the outcomes observed in the STaR randomized controlled clinical trial. We found that overall adherence to treatment and the resulting pattern of treatment interruptions are key drivers of HIV-1 treatment outcomes. Our model, though largely independent of efficacy data from RCT, was accurate in producing 96-week outcomes, qualitatively and quantitatively comparable to the ones observed in the STaR trial. We demonstrate that multi-paradigm micro-simulation modeling is a promising tool to generate evidence about optimal policy strategies in HIV-1 treatment, including treatment efficacy, HIV-1 transmission, and cost-effectiveness analysis.

  5. Reproductive factors and epithelial ovarian cancer survival in the EPIC cohort study

    PubMed Central

    Bešević, Jelena; Gunter, Marc J; Fortner, Renée T; Tsilidis, Konstantinos K; Weiderpass, Elisabete; Charlotte Onland-Moret, N; Dossus, Laure; Tjønneland, Anne; Hansen, Louise; Overvad, Kim; Mesrine, Sylvie; Baglietto, Laura; Clavel-Chapelon, Françoise; Kaaks, Rudolf; Aleksandrova, Krasimira; Boeing, Heiner; Trichopoulou, Antonia; Lagiou, Pagona; Bamia, Christina; Masala, Giovanna; Agnoli, Claudia; Tumino, Rosario; Ricceri, Fulvio; Panico, Salvatore; Bueno-de-Mesquita, HB(as); Peeters, Petra H; Jareid, Mie; Ramón Quirós, J; Duell, Eric J; Sánchez, María-José; Larrañaga, Nerea; Chirlaque, María-Dolores; Barricarte, Aurelio; Dias, Joana A; Sonestedt, Emily; Idahl, Annika; Lundin, Eva; Wareham, Nicholas J; Khaw, Kay-Tee; Travis, Ruth C; Rinaldi, Sabina; Romieu, Isabelle; Riboli, Elio; Merritt, Melissa A

    2015-01-01

    Background: Reproductive factors influence the risk of developing epithelial ovarian cancer (EOC), but little is known about their association with survival. We tested whether prediagnostic reproductive factors influenced EOC-specific survival among 1025 invasive EOC cases identified in the European Prospective Investigation into Cancer and Nutrition (EPIC) study, which included 521 330 total participants (approximately 370 000 women) aged 25–70 years at recruitment from 1992 to 2000. Methods: Information on reproductive characteristics was collected at recruitment. Cox proportional hazards regression models were used to estimate hazard ratios (HRs) and 95% confidence intervals (CIs), and multivariable models were adjusted for age and year of diagnosis, body mass index, tumour stage, smoking status and stratified by study centre. Results: After a mean follow-up of 3.6 years (±3.2 s.d.) following EOC diagnosis, 511 (49.9%) of the 1025 women died from EOC. We observed a suggestive survival advantage in menopausal hormone therapy (MHT) users (ever vs never use, HR=0.80, 95% CI=0.62–1.03) and a significant survival benefit in long-term MHT users (⩾5 years use vs never use, HR=0.70, 95% CI=0.50–0.99, Ptrend=0.04). We observed similar results for MHT use when restricting to serous cases. Other reproductive factors, including parity, breastfeeding, oral contraceptive use and age at menarche or menopause, were not associated with EOC-specific mortality risk. Conclusions: Further studies are warranted to investigate the possible improvement in EOC survival in MHT users. PMID:26554655

  6. ANALOG I/O MODULE TEST SYSTEM BASED ON EPICS CA PROTOCOL AND ACTIVEX CA INTERFACE

    SciTech Connect

    YENG,YHOFF,L.

    2003-10-13

    Analog input (ADC) and output (DAC) modules play a substantial role in device level control of accelerator and large experiment physics control system. In order to get the best performance some features of analog modules including linearity, accuracy, crosstalk, thermal drift and so on have to be evaluated during the preliminary design phase. Gain and offset error calibration and thermal drift compensation (if needed) may have to be done in the implementation phase as well. A natural technique for performing these tasks is to interface the analog VO modules and GPIB interface programmable test instruments with a computer, which can complete measurements or calibration automatically. A difficulty is that drivers of analog modules and test instruments usually work on totally different platforms (vxworks VS Windows). Developing new test routines and drivers for testing instruments under VxWorks (or any other RTOS) platform is not a good solution because such systems have relatively poor user interface and developing such software requires substantial effort. EPICS CA protocol and ActiveX CA interface provide another choice, a PC and LabVIEW based test system. Analog 110 module can be interfaced from LabVIEW test routines via ActiveX CA interface. Test instruments can be controlled via LabVIEW drivers, most of which are provided by instrument vendors or by National Instruments. Labview also provides extensive data analysis and process functions. Using these functions, users can generate powerful test routines very easily. Several applications built for Spallation Neutron Source (SNS) Beam Loss Monitor (BLM) system are described in this paper.

  7. Thermal Design and Analysis of a Multi-Stage 30K Radiative Cooling System for EPIC

    NASA Technical Reports Server (NTRS)

    Chui, Talso; Bock, Jamie; Holmes, Warren; Raab, Jeff

    2009-01-01

    The Experimental Probe of Inflationary Cosmology (EPIC) is an implementation of the NASA Einstein Inflation Probe mission, to answer questions about the physics of Inflation in the early Universe by measuring the polarization of the Cosmic Microwave Background (CMB). The mission relies on a passive cooling system to cool the enclosure of a telescope to 30 K; a cryocooler then cools this enclosure to 18 K and the telescope to 4 K. Subsequently, an adiabatic demagnetization refrigerator further cools a large focal plane to approx.100 mK. For this mission, the telescope has an aperture of 1.4 m, and the spacecraft's symmetry axis is oriented approx. 45 degrees relative to the direction of the sun. The spacecraft will be spun at approx. 0.5 rpm around this axis, which then precesses on the sky at 1 rph. The passive system must both supply the necessary cooling power for the cryocooler and meet demanding temperature stability requirements. We describe the thermal design of a passive cooling system consisting of four V-groove radiators for shielding of solar radiation and cooling the telescope to 30 K. The design realizes loads of 20 and 68 mW at the 4 K and 18 K stages on the cooler, respectively. A lower cost option for reaching 40 K with three V-groove radiators is also described. The analysis includes radiation coupling between stages of the radiators and sunshields, and parasitic conduction in the bipod support, harnesses, and ADR leads. Dynamic effects are also estimated, including the very small variations in temperature due to the scan motion of the spacecraft.

  8. Dietary Total Antioxidant Capacity and Colorectal Cancer in the Italian EPIC Cohort

    PubMed Central

    Vece, Marilena Monica; Agnoli, Claudia; Grioni, Sara; Sieri, Sabina; Pala, Valeria; Pellegrini, Nicoletta; Frasca, Graziella; Tumino, Rosario; Mattiello, Amalia; Panico, Salvatore; Bendinelli, Benedetta; Masala, Giovanna; Ricceri, Fulvio; Sacerdote, Carlotta; Krogh, Vittorio

    2015-01-01

    Background Colorectal cancer is the third most common cancer worldwide. Diet has been hypothesized as involved in colorectal cancer etiology, but few studies on the influence of total dietary antioxidant intake on colorectal cancer risk have been performed. Methods We investigated the association between colorectal cancer risk and the total antioxidant capacity (TAC) of the diet, and also of intake of selected antioxidants, in 45,194 persons enrolled in 5 centers (Florence, Naples, Ragusa, Turin and Varese) of the European Prospective Investigation into Cancer and Nutrition (EPIC) Italy study. TAC was estimated by the Trolox equivalent antioxidant capacity (TEAC) assay. Hazard ratios (HRs) for developing colorectal cancer, and colon and rectal cancers separately, adjusted for confounders, were estimated for tertiles of TAC by Cox modeling, stratifying by center. Results Four hundred thirty-six colorectal cancers were diagnosed over a mean follow-up of 11.28 years. No significant association between dietary TAC and colorectal cancer incidence was found. However for the highest category of TAC compared to the lowest, risk of developing colon cancer was lower (HR: 0.63; 95% CI: 0.44–0.89, P trend: 0.008). By contrast, increasing TAC intake was associated with significantly increasing risks of rectal cancer (2nd tertile HR: 2.09; 95%CI: 1.19–3.66; 3rd tertile 2.48 95%CI: 1.32–4.66; P trend 0.007). Intakes of vitamin C, vitamin E, and ß-carotene were not significantly associated with colorectal cancer risk. Conclusions Further prospective studies are needed to confirm the contrasting effects of high total antioxidant intake on risk of colon and rectal cancers. PMID:26565695

  9. Glycemic index, glycemic load and mammographic breast density: the EPIC Florence longitudinal study.

    PubMed

    Masala, Giovanna; Assedi, Melania; Bendinelli, Benedetta; Ermini, Ilaria; Occhini, Daniela; Sieri, Sabina; Brighenti, Furio; Del Turco, Marco Rosselli; Ambrogetti, Daniela; Palli, Domenico

    2013-01-01

    A few studies have evaluated the association between diet and mammographic breast density (MBD) and results are inconsistent. MBD, a well-recognized risk factor for breast cancer, has been proposed as a marker of cumulative exposure to hormones and growth factors. Diets with a high glycemic index (GI) or glycemic load (GL) may increase breast cancer risk, via an effect on the insulin-like growth factor axis. We have investigated the association between carbohydrate intake, GI, GL and MBD in a prospective study. We identified a large series of women, in the frame of the EPIC-Florence cohort, with a mammogram taken five years after enrolment, when detailed information on dietary and lifestyle habits and anthropometric measurements had been collected. Mammograms have been retrieved (1,668, 83%) and MBD assessed according to Wolfe's classification. We compared women with high MBD (P2+DY Wolfe's categories) with those with low MBD (N1+P1) through logistic models adjusted for age, education, body mass index, menopause, number of children, breast feeding, physical activity, non-alcohol energy, fibers, saturated fat and alcohol. A direct association between GL and high MBD emerged in the highest quintile of intake in comparison with the lowest quintile (OR = 1.73, 95%CI 1.13-2.67, p for trend = 0.048) while no association with glycemic index was evident. These results were confirmed after exclusion of women reporting to be on a diet or affected with diabetes, and when Hormone Replacement Therapy at the date of mammographic examination used to assess MBD was considered. The effect was particularly evident among leaner women, although no interaction was found. A positive association was suggested for increasing simple sugar and total carbohydrates intakes limited to the highest quintiles. In this Italian population we observed an association between glycemic load, total and rapidly absorbed carbohydrates and high MBD. These novel results warrant further investigations.

  10. Reproductive and menstrual factors and risk of differentiated thyroid carcinoma: the EPIC study.

    PubMed

    Zamora-Ros, Raul; Rinaldi, Sabina; Biessy, Carine; Tjønneland, Anne; Halkjaer, Jytte; Fournier, Agnes; Boutron-Ruault, Marie-Christine; Mesrine, Sylvie; Tikk, Kaja; Fortner, Reneé T; Boeing, Heiner; Förster, Jana; Trichopoulou, Antonia; Trichopoulos, Dimitrios; Papatesta, Eleni-Maria; Masala, Giovanna; Tagliabue, Giovanna; Panico, Salvatore; Tumino, Rosario; Polidoro, Silvia; Peeters, Petra H M; Bueno-de-Mesquita, H Bas; Weiderpass, Elisabete; Lund, Eiliv; Argüelles, Marcial; Agudo, Antonio; Molina-Montes, Esther; Navarro, Carmen; Barricarte, Aurelio; Larrañaga, Nerea; Manjer, Jonas; Almquist, Martin; Sandström, Maria; Hennings, Joakim; Tsilidis, Konstantinos K; Schmidt, Julie A; Khaw, Kay-Thee; Wareham, Nicholas J; Romieu, Isabelle; Byrnes, Graham; Gunter, Marc J; Riboli, Elio; Franceschi, Silvia

    2015-03-01

    Differentiated thyroid carcinoma (TC) is threefold more common in women than in men and, therefore, a role of female hormones in the etiology of differentiated TC has been suggested. We assessed these hypotheses in the European Prospective Investigation into Cancer and Nutrition (EPIC) cohort. Among 345,157 women (mean age 51) followed for an average of 11 years, 508 differentiated TC cases were identified. Hazard ratios (HRs) and 95% confidence intervals (CIs) were estimated using Cox proportional hazards regression models. No significant associations were observed between differentiated TC risk and number of pregnancies, breast feeding, menopausal status, and age at menarche and at menopause. Significant associations were found with history of infertility problems (HR 1.70; 95% CI 1.12-2.60), a recent pregnancy (HR for ≤ 5 vs. >5 years before recruitment 3.87; 95% CI 1.43-10.46), menopause type (HR for surgical vs. natural menopause: 2.16; 95% CI 1.41-3.31), oral contraceptive (OC) use at recruitment (HR: 0.48; 95% CI 0.25-0.92) and duration of OC use (HR for ≥ 9 vs. ≤ 1 year: 0.66; 95% CI: 0.50-0.89). An increased risk was also found with hormone replacement therapy use at recruitment (HR = 1.30, 95% CI 1.02-1.67), but this was not significant after adjustment for type of menopause (HR = 1.22, 95% CI 0.95-1.57). Overall, our findings do not support a strong role of reproductive and menstrual factors, and female hormone use in the etiology of differentiated TC. The few observed associations may be real or accounted for by increased surveillance in women who had infertility problems, recent pregnancies or underwent surgical menopause.

  11. Inflammatory markers and risk of epithelial ovarian cancer by tumor subtypes: the EPIC cohort

    PubMed Central

    Ose, Jennifer; Schock, Helena; Tjonneland, Anne; Hansen, Louise; Overvad, Kim; Dossus, Laure; Clavel-Chapelon, Francoise; Baglietto, Laura; Boeing, Heiner; Trichopolou, Antonia; Benetou, Vassiliki; Lagiou, Pagona; Masala, Giovanna; Tagliabue, Giovanna; Tumino, Rosario; Sacerdote, Carlotta; Mattiello, Amalia; de Mesquita, H.Bas Bueno; Peeters, Petra H M; Onland-Moret, N Charlotte; Weiderpass, Elisabete; Gram, Inger T; Sánchez, Soledad; Obon-Santacana, Mireia; Sànchez-Pérez, Maria-José; Larrañaga, Nerea; Castaño, José María Huerta; Ardanaz, Eva; Brändstedt, Jenny; Lundin, Eva; Idahl, Annika; Travis, Ruth C; Khaw, Kay-Tee; Rinaldi, Sabina; Romieu, Isabelle; Merrit, Melissa A; Gunter, Marc J; Riboli, Elio; Kaaks, Rudolf; Fortner, Renée T

    2015-01-01

    Background Evidence suggests an etiologic role for inflammation in ovarian carcinogenesis and heterogeneity between tumor subtypes and anthropometric indices. Prospective studies on circulating inflammatory markers and epithelial invasive ovarian cancer (EOC) have predominantly investigated overall risk; data characterizing risk by tumor characteristics (histology, grade, stage, dualistic model of ovarian carcinogenesis) and anthropometric indices are sparse. Methods We conducted a nested case-control study in the European Prospective Investigation into Cancer and Nutrition (EPIC) cohort to evaluate C-reactive protein (CRP), interleukin-6 (IL-6), and EOC risk by tumor characteristics. A total of 754 eligible EOC cases were identified; two controls (n=1,497) were matched per case. We used multivariable conditional logistic regression to assess associations. Results CRP and IL-6 were not associated with overall EOC risk. However, consistent with prior research, CRP >10 vs. CRP ≤1 mg/L was associated with higher overall EOC risk (OR=1.67 [1.03 - 2.70]). We did not observe significant associations or heterogeneity in analyses by tumor characteristics. In analyses stratified by waist circumference, inflammatory markers were associated with higher risk among women with higher waist circumference; no association was observed for women with normal waist circumference: (e.g., IL-6: waist ≤80: ORlog2=0.97 [0.81 - 1.16]; waist >88: ORlog2=1.78 [1.28 - 2.48], pheterogeneity ≤0.01). Conclusions Our data suggest that high CRP is associated with increased risk of overall EOC, and that IL-6 and CRP may be associated with EOC risk among women with higher adiposity. Impact Our data add to global evidence that ovarian carcinogenesis may be promoted by an inflammatory milieu. PMID:25855626

  12. Healthy lifestyle index and risk of gastric adenocarcinoma in the EPIC cohort study.

    PubMed

    Buckland, G; Travier, N; Huerta, J M; Bueno-de-Mesquita, H B As; Siersema, P D; Skeie, G; Weiderpass, E; Engeset, D; Ericson, U; Ohlsson, B; Agudo, A; Romieu, I; Ferrari, P; Freisling, H; Colorado-Yohar, S; Li, K; Kaaks, R; Pala, V; Cross, A J; Riboli, E; Trichopoulou, A; Lagiou, P; Bamia, C; Boutron-Ruault, M C; Fagherazzi, G; Dartois, L; May, A M; Peeters, P H; Panico, S; Johansson, M; Wallner, B; Palli, D; Key, T J; Khaw, K T; Ardanaz, E; Overvad, K; Tjønneland, A; Dorronsoro, M; Sánchez, M J; Quirós, J R; Naccarati, A; Tumino, R; Boeing, H; Gonzalez, C A

    2015-08-01

    Several modifiable lifestyle factors, including smoking, alcohol, certain dietary factors and weight are independently associated with gastric cancer (GC); however, their combined impact on GC risk is unknown. We constructed a healthy lifestyle index to investigate the joint influence of these behaviors on GC risk within the European Prospective Investigation into Cancer and Nutrition (EPIC) cohort. The analysis included 461,550 participants (662 first incident GC cases) with a mean follow-up of 11.4 years. A healthy lifestyle index was constructed, assigning 1 point for each healthy behavior related to smoking status, alcohol consumption and diet quality (represented by the Mediterranean diet) for assessing overall GC and also body mass index for cardia GC and 0 points otherwise. Risk of GC was calculated using Cox proportional hazards regression models while adjusting for relevant confounders. The highest versus lowest score in the healthy lifestyle index was associated with a significant lower risk of GC, by 51% overall (HR 0.49 95% CI 0.35, 0.70), by 77% for cardia GC (HR 0.23 95% CI 0.08, 0.68) and by 47% for noncardia GC (HR 0.53 (95% CI 0.32, 0.87), p-trends<0.001. Population attributable risk calculations showed that 18.8% of all GC and 62.4% of cardia GC cases could have been prevented if participants in this population had followed the healthy lifestyle behaviors of this index. Adopting several healthy lifestyle behaviors including not smoking, limiting alcohol consumption, eating a healthy diet and maintaining a normal weight is associated with a large decreased risk of GC.

  13. EPIC 220204960: A Quadruple Star System Containing Two Strongly Interacting Eclipsing Binaries

    NASA Astrophysics Data System (ADS)

    Rappaport, S.; Vanderburg, A.; Borkovits, T.; Kalomeni, B.; Halpern, J. P.; Ngo, H.; Mace, G. N.; Fulton, B. J.; Howard, A. W.; Isaacson, H.; Petigura, E. A.; Mawet, D.; Kristiansen, M. H.; Jacobs, T. L.; LaCourse, D.; Bieryla, A.; Forgács-Dajka, E.; Nelson, L.

    2017-01-01

    We present a strongly interacting quadruple system associated with the K2 target EPIC 220204960. The K2 target itself is a Kp = 12.7 magnitude star at Teff ≃ 6100 K which we designate as "B-N" (blue northerly image). The host of the quadruple system, however, is a Kp ≃ 17 magnitude star with a composite M-star spectrum, which we designate as "R-S" (red southerly image). With a 3.2″ separation and similar radial velocities and photometric distances, `B-N' is likely physically associated with `R-S', making this a quintuple system, but that is incidental to our main claim of a strongly interacting quadruple system in `R-S'. The two binaries in `R-S' have orbital periods of 13.27 d and 14.41 d, respectively, and each has an inclination angle of ≳ 89°. From our analysis of radial velocity measurements, and of the photometric lightcurve, we conclude that all four stars are very similar with masses close to 0.4 M⊙. Both of the binaries exhibit significant ETVs where those of the primary and secondary eclipses `diverge' by 0.05 days over the course of the 80-day observations. Via a systematic set of numerical simulations of quadruple systems consisting of two interacting binaries, we conclude that the outer orbital period is very likely to be between 300 and 500 days. If sufficient time is devoted to RV studies of this faint target, the outer orbit should be measurable within a year.

  14. Long-term mortality of hospitalized pneumonia in the EPIC-Norfolk cohort.

    PubMed

    Myint, P K; Hawkins, K R; Clark, A B; Luben, R N; Wareham, N J; Khaw, K-T; Wilson, A M

    2016-03-01

    Little is known about cause-specific long-term mortality beyond 30 days in pneumonia. We aimed to compare the mortality of patients with hospitalized pneumonia compared to age- and sex-matched controls beyond 30 days. Participants were drawn from the European Prospective Investigation into Cancer (EPIC)-Norfolk prospective population study. Hospitalized pneumonia cases were identified from record linkage (ICD-10: J12-J18). For this study we excluded people with hospitalized pneumonia who died within 30 days. Each case identified was matched to four controls and followed up until the end June 2012 (total 15 074 person-years, mean 6·1 years, range 0·08-15·2 years). Cox regression models were constructed to examine the all-cause, respiratory and cardiovascular mortality using date of pneumonia onset as baseline with binary pneumonia status as exposure. A total of 2465 men and women (503 cases, 1962 controls) [mean age (s.d.) 64·5 (8·3) years] were included in the study. Between a 30-day to 1-year period, hazard ratios (HRs) of all-cause and cardiovascular mortality were 7·3 [95% confidence interval (CI) 5·4-9·9] and 5·9 (95% CI 3·5-9·7), respectively (with very few respiratory deaths within the same period) in cases compared to controls after adjusting for age, sex, asthma, smoking status, pack years, systolic and diastolic blood pressure, diabetes, physical activity, waist-to-hip ratio, prevalent cardiovascular and respiratory diseases. All outcomes assessed also showed increased risk of death in cases compared to controls after 1 year; respiratory cause of death being the most significant during that period (HR 16·4, 95% CI 8·9-30·1). Hospitalized pneumonia was associated with increased all-cause and specific-cause mortality beyond 30 days.

  15. Dietary intake of acrylamide and epithelial ovarian cancer risk in the european prospective investigation into cancer and nutrition (EPIC) cohort.

    PubMed

    Obón-Santacana, Mireia; Peeters, Petra H M; Freisling, Heinz; Dossus, Laure; Clavel-Chapelon, Françoise; Baglietto, Laura; Schock, Helena; Fortner, Renée T; Boeing, Heiner; Tjønneland, Anne; Olsen, Anja; Overvad, Kim; Menéndez, Virginia; Sanchez, Maria-José; Larrañaga, Nerea; Huerta Castaño, José María; Barricarte, Aurelio; Khaw, Kay-Tee; Wareham, Nick; Travis, Ruth C; Merritt, Melissa A; Trichopoulou, Antonia; Trichopoulos, Dimitrios; Orfanos, Philippos; Masala, Giovanna; Sieri, Sabina; Tumino, Rosario; Vineis, Paolo; Mattiello, Amalia; Bueno-de-Mesquita, H B; Onland-Moret, N Charlotte; Wirfält, Elisabeth; Stocks, Tanja; Idahl, Annika; Lundin, Eva; Skeie, Guri; Gram, Inger T; Weiderpass, Elisabete; Riboli, Elio; Duell, Eric J

    2015-01-01

    Acrylamide, classified in 1994 by the International Agency for Research on Cancer (IARC) as "probably carcinogenic" to humans, was discovered in 2002 in some heat-treated, carbohydrate-rich foods. The association between dietary acrylamide intake and epithelial ovarian cancer risk (EOC) has been previously studied in one case-control and three prospective cohort studies which obtained inconsistent results and could not further examine histologic subtypes other than serous EOC. The present study was carried out in the European Prospective Investigation into Cancer and Nutrition (EPIC) subcohort of women (n = 325,006). Multivariate Cox proportional hazards models were used to assess the association between questionnaire-based acrylamide intake and EOC risk. Acrylamide was energy-adjusted using the residual method and was evaluated both as a continuous variable (per 10 μg/d) and in quintiles; when subgroups by histologic EOC subtypes were analyzed, acrylamide intake was evaluated in quartiles. During a mean follow-up of 11 years, 1,191 incident EOC cases were diagnosed. At baseline, the median acrylamide intake in EPIC was 21.3 μg/d. No associations and no evidence for a dose-response were observed between energy-adjusted acrylamide intake and EOC risk (HR10μg/d,1.02; 95% CI, 0.96-1.09; HRQ5vsQ1, 0.97; 95% CI, 0.76-1.23). No differences were seen when invasive EOC subtypes (582 serous, 118 endometrioid, and 79 mucinous tumors) were analyzed separately. This study did not provide evidence that acrylamide intake, based on food intake questionnaires, was associated with risk for EOC in EPIC. Additional studies with more reliable estimates of exposure based on biomarkers may be needed.

  16. Dietary intakes and food sources of phenolic acids in the European Prospective Investigation into Cancer and Nutrition (EPIC) study.

    PubMed

    Zamora-Ros, Raul; Rothwell, Joseph A; Scalbert, Augustin; Knaze, Viktoria; Romieu, Isabelle; Slimani, Nadia; Fagherazzi, Guy; Perquier, Florence; Touillaud, Marina; Molina-Montes, Esther; Huerta, José María; Barricarte, Aurelio; Amiano, Pilar; Menéndez, Virginia; Tumino, Rosario; de Magistris, Maria Santucci; Palli, Domenico; Ricceri, Fulvio; Sieri, Sabina; Crowe, Francesca L; Khaw, Kay-Thee; Wareham, Nicholas J; Grote, Verena; Li, Kuanrong; Boeing, Heiner; Förster, Jana; Trichopoulou, Antonia; Benetou, Vassiliki; Tsiotas, Konstantinos; Bueno-de-Mesquita, H Bas; Ros, Martine; Peeters, Petra H M; Tjønneland, Anne; Halkjær, Jytte; Overvad, Kim; Ericson, Ulrika; Wallström, Peter; Johansson, Ingegerd; Landberg, Rikard; Weiderpass, Elisabete; Engeset, Dagrun; Skeie, Guri; Wark, Petra; Riboli, Elio; González, Carlos A

    2013-10-01

    Phenolic acids are secondary plant metabolites that may have protective effects against oxidative stress, inflammation and cancer in experimental studies. To date, limited data exist on the quantitative intake of phenolic acids. We estimated the intake of phenolic acids and their food sources and associated lifestyle factors in the European Prospective Investigation into Cancer and Nutrition (EPIC) study. Phenolic acid intakes were estimated for 36,037 subjects aged 35-74 years and recruited between 1992 and 2000 in ten European countries using a standardised 24 h recall software (EPIC-Soft), and their food sources were identified. Dietary data were linked to the Phenol-Explorer database, which contains data on forty-five aglycones of phenolic acids in 452 foods. The total phenolic acid intake was highest in Aarhus, Denmark (1265·5 and 980·7 mg/d in men and women, respectively), while the intake was lowest in Greece (213·2 and 158·6 mg/d in men and women, respectively). The hydroxycinnamic acid subclass was the main contributor to the total phenolic acid intake, accounting for 84·6-95·3% of intake depending on the region. Hydroxybenzoic acids accounted for 4·6-14·4%, hydroxyphenylacetic acids 0·1-0·8% and hydroxyphenylpropanoic acids ≤ 0·1% for all regions. An increasing south-north gradient of consumption was also found. Coffee was the main food source of phenolic acids and accounted for 55·3-80·7% of the total phenolic acid intake, followed by fruits, vegetables and nuts. A high heterogeneity in phenolic acid intake was observed across the European countries in the EPIC cohort, which will allow further exploration of the associations with the risk of diseases.

  17. Intake of fruits and vegetables and risk of cancer of the upper aero-digestive tract: the prospective EPIC-study.

    PubMed

    Boeing, Heiner; Dietrich, Thomas; Hoffmann, Kurt; Pischon, Tobias; Ferrari, Pietro; Lahmann, Petra H; Boutron-Ruault, Marie Christine; Clavel-Chapelon, Francoise; Allen, Naomi; Key, Tim; Skeie, Guri; Lund, Eiliv; Olsen, Anja; Tjonneland, Anne; Overvad, Kim; Jensen, Majken K; Rohrmann, Sabine; Linseisen, Jakob; Trichopoulou, Antonia; Bamia, Christina; Psaltopoulou, Theodora; Weinehall, Lars; Johansson, Ingegerd; Sánchez, Maria-José; Jakszyn, Paula; Ardanaz, Eva; Amiano, Pilar; Chirlaque, Maria Dolores; Quirós, J Ramón; Wirfalt, Elisabet; Berglund, Göran; Peeters, Petra H; van Gils, Carla H; Bueno-de-Mesquita, H Bas; Büchner, Frederike L; Berrino, Franco; Palli, Domenico; Sacerdote, Carlotta; Tumino, Rosario; Panico, Salvatore; Bingham, Sheila; Khaw, Kay-Tee; Slimani, Nadia; Norat, Teresa; Jenab, Mazda; Riboli, Elio

    2006-09-01

    Epidemiologic studies suggest that a high intake of fruits and vegetables is associated with decreased risk of cancers of the upper aero-digestive tract. We studied data from 345,904 subjects of the prospective European Investigation into Cancer and Nutrition (EPIC) recruited in seven European countries, who had completed a dietary questionnaire in 1992-1998. During 2,182,560 person years of observation 352 histologically verified incident squamous cell cancer (SCC) cases (255 males; 97 females) of the oral cavity, pharynx, larynx, and esophagus were identified. Linear and restricted cubic spline Cox regressions were fitted on variables of intake of fruits and vegetables and adjusted for potential confounders. We observed a significant inverse association with combined total fruits and vegetables intake (estimated relative risk (RR) = 0.91; 95% confidence interval (95% CI) 0.83-1.00 per 80 g/d of consumption), and nearly significant inverse associations in separate analyses with total fruits and total vegetables intake (RR: 0.97 (95% CI: 0.92-1.02) and RR = 0.89 (95% CI: 0.78-1.02) per 40 g/d of consumption). Overall, vegetable subgroups were not related to risk with the exception of intake of root vegetables in men. Restricted cubic spline regression did not improve the linear model fits except for total fruits and vegetables and total fruits with a significant decrease in risk at low intake levels (<120 g/d) for fruits. Dietary recommendations should consider the potential benefit of increasing fruits and vegetables consumption for reducing the risk of cancers of the upper aero-digestive tract, particularly at low intake.

  18. Coffee and tea consumption, genotype-based CYP1A2 and NAT2 activity and colorectal cancer risk-results from the EPIC cohort study.

    PubMed

    Dik, Vincent K; Bueno-de-Mesquita, H B As; Van Oijen, Martijn G H; Siersema, Peter D; Uiterwaal, Cuno S P M; Van Gils, Carla H; Van Duijnhoven, Fränzel J B; Cauchi, Stéphane; Yengo, Loic; Froguel, Philippe; Overvad, Kim; Bech, Bodil H; Tjønneland, Anne; Olsen, Anja; Boutron-Ruault, Marie-Christine; Racine, Antoine; Fagherazzi, Guy; Kühn, Tilman; Campa, Daniele; Boeing, Heiner; Aleksandrova, Krasimira; Trichopoulou, Antonia; Peppa, Eleni; Oikonomou, Eleni; Palli, Domenico; Grioni, Sara; Vineis, Paolo; Tumino, Rosaria; Panico, Salvatore; Peeters, Petra H M; Weiderpass, Elisabete; Engeset, Dagrun; Braaten, Tonje; Dorronsoro, Miren; Chirlaque, María-Dolores; Sánchez, María-José; Barricarte, Aurelio; Zamora-Ros, Raul; Argüelles, Marcial; Jirström, Karin; Wallström, Peter; Nilsson, Lena M; Ljuslinder, Ingrid; Travis, Ruth C; Khaw, Kay-Tee; Wareham, Nick; Freisling, Heinz; Licaj, Idlir; Jenab, Mazda; Gunter, Marc J; Murphy, Neil; Romaguera-Bosch, Dora; Riboli, Elio

    2014-07-15

    Coffee and tea contain numerous antimutagenic and antioxidant components and high levels of caffeine that may protect against colorectal cancer (CRC). We investigated the association between coffee and tea consumption and CRC risk and studied potential effect modification by CYP1A2 and NAT2 genotypes, enzymes involved in the metabolization of caffeine. Data from 477,071 participants (70.2% female) of the European Investigation into Cancer and Nutrition (EPIC) cohort study were analyzed. At baseline (1992-2000) habitual (total, caffeinated and decaffeinated) coffee and tea consumption was assessed with dietary questionnaires. Cox proportional hazards models were used to estimate adjusted hazard ratio's (HR) and 95% confidence intervals (95% CI). Potential effect modification by genotype-based CYP1A2 and NAT2 activity was studied in a nested case-control set of 1,252 cases and 2,175 controls. After a median follow-up of 11.6 years, 4,234 participants developed CRC (mean age 64.7 ± 8.3 years). Total coffee consumption (high vs. non/low) was not associated with CRC risk (HR 1.06, 95% CI 0.95-1.18) or subsite cancers, and no significant associations were found for caffeinated (HR 1.10, 95% CI 0.97-1.26) and decaffeinated coffee (HR 0.96, 95% CI 0.84-1.11) and tea (HR 0.97, 95% CI 0.86-1.09). High coffee and tea consuming subjects with slow CYP1A2 or NAT2 activity had a similar CRC risk compared to non/low coffee and tea consuming subjects with a fast CYP1A2 or NAT2 activity, which suggests that caffeine metabolism does not affect the link between coffee and tea consumption and CRC risk. This study shows that coffee and tea consumption is not likely to be associated with overall CRC.

  19. Ultra-short-period Planets in K2 with Companions: A Double Transiting System for EPIC 220674823

    NASA Astrophysics Data System (ADS)

    Adams, Elisabeth R.; Jackson, Brian; Endl, Michael; Cochran, William D.; MacQueen, Phillip J.; Duev, Dmitry A.; Jensen-Clem, Rebecca; Salama, Maïssa; Ziegler, Carl; Baranec, Christoph; Kulkarni, Shrinivas; Law, Nicholas M.; Riddle, Reed

    2017-02-01

    Two transiting planets have been identified orbiting K2 target EPIC 220674823. One object is an ultra-short-period planet (USP) with a period of just 0.57 days (13.7 hr), while the other has a period of 13.3 days. Both planets are small, with the former having a radius of {R}{{p}1}=1.5 {R}\\oplus and the latter {R}{{p}2}=2.5 {R}\\oplus . Follow-up observations, including radial velocity (with uncertainties of 110 m s‑1) and high-resolution adaptive optics imagery, show no signs of stellar companions. EPIC 220674823 is the 12th confirmed or validated planetary system in which a USP (i.e., having an orbital period less than 1 day) is accompanied by at least one additional planet, suggesting that such systems may be common and must be accounted for in models for the formation and evolution of such extreme systems.

  20. Epic Moon: a history of lunar exploration in the age of the telescope

    NASA Astrophysics Data System (ADS)

    Sheehan, William P.; Dobbins, Thomas A.

    timeless. The story of mankind's endless fascination with the world of the Moon and the gallery of interesting characters who pursued the details of the lunar surface with often strange intensity is a modern-day epic. Many of the stories recounted for the first time here will still be recounted generations hence, when the Apollo explorations may seem a mere interlude in what has actually been a more sustained and more significant era of endeavour. It is possible that the names of Schroeter, Beer and Mädler, Webb and Schmidt may prove to be as memorable as those of Armstrong, Aldrin, Cernan and Schmitt.

  1. EPIC Study of Two Enigmatic Sources: The Mouse and SNR 359.1-0.5

    NASA Technical Reports Server (NTRS)

    Pavlov, George

    2004-01-01

    The objective of the original proposal was to observe the Mouse pulsar wind nebula (associated with PSR J1744-2958) and the nearby supernova remnant G359.1-0.5, where the pulsar was probably born, with the XMM-Newton observatory to study the properties of these objects. SNR G359.1-0.5 was accepted as a Category C target and has not been observed. The Mouse was observed on April 27,2003 for 52 ks. The image analysis has shown that the Mouse is extended in the East-West direction, possibly along the direction of the pulsar's proper motion. The spectrum of this pulsar wind nebula can be described as an absorbed power law with the photon index GAMMA = 1.9 plus or minus 0.1, effective hydrogen column density n(sub H) = (2.6 plus or minus 0.1) x 10(exp 22) per square centimeter, and flux F = 1.8 x 10(exp -11) erg per square centimeter per second in the 1-10 keV energy range. Based on the n(sub H) value, the distance to the source is about 5 kpc, which results in the luminosity 3.7 x 10(exp 34) erg per second. We conclude that PSR J1744-2958 and the Mouse are not physically associated with G359.1-0.5, which lies at a larger distance. In addition to the Mouse, we also detected two Low-Mass X-ray Binaries, SLX 1744-299 and 1744-300, in the EPIC MOS and PN fields of view. The latter of these objects showed a Type I X-ray burst during our observation, with a rise time of 5 s and decay time of 60 s. A very strong pileup during the burst made the analysis of the burst properties unreliable. The spectral analysis of the persistent radiation from SLX 1744-299 and 1744-300 yields the hydrogen column densities of 3.2 plus or minus 0.1 and (3.6 plus or minus 0.2) x 10(exp 22) per square centimeter, respectively, which suggests that the sources are close to the Galactic center (d = 8-9 kpc). The spectra can be reasonably well fitted with a blackbody plus thin disk model, with the blackbody temperatures of 1.7 plus or minus 0.2 and 1.8 plus or minus 0.2 keV, respectively.

  2. Assessment of global numerical models in the East Pacific as evidenced from EPIC2001 project

    NASA Astrophysics Data System (ADS)

    Marín, Julio C.; Raga, G. B.; Raymond, David J.

    2009-01-01

    ERA-40 and NCEP-DOE global Reanalysis and the global tropospheric FNL analysis are compared with observations from the EPIC2001 experiment and data from TAO moorings along 95 °W, to assess how they represent the atmospheric conditions in the East Pacific. All analyses represent reasonably well the mean vertical wind profiles in the atmospheric boundary layer (ABL) and at all heights within the Intertropical Convergence Zone (ITCZ) at 95 °W. However, mean vertical zonal wind profiles show a poor agreement in the layer 850-600 hPa from the equator to 5 °N. This could cause differences in reproducing the surface meridional pressure gradient, as a result of geostrophic dynamics (Raymond, Bretherton, Molinari, 2006. Dynamics of the Intertropical Convergence Zone of the East Pacific. J. Atmos. Sci. 63, 582-597), that drives the meridional flow into the ITCZ. θe vertical profiles, surface fluxes and near-surface temperature present appreciable differences with observations between the equator and 5 °N, suggesting that these global analyses must be used with caution in that region. Analyses seem to represent fairly well the time evolution of the surface meridional wind in the ITCZ and also the transitions of the zonal winds at 850 hPa, as a result of the easterly wave passages over the region. Westerly periods in the ITCZ are associated with strong surface southerly winds, which result in enhanced convection and indicate an increase in the relative circulation of the region. In addition, easterlies coincide with a decrease in relative circulation, which could be related to the decrease in the convective activity. The averaged wind field in the ITCZ is reasonably well reproduced by all datasets, supporting their use in dynamical studies in the region. Unfortunately, the same cannot be said for the relative circulation and detrained mass flux since they show large differences with observations. In general, all analyses could be used to study mean conditions over the

  3. Exon-primed intron-crossing (EPIC) markers for evolutionary studies of Ficus and other taxa in the fig family (Moraceae)1

    PubMed Central

    Yao, Xiaohong; Li, Chenhong; Dick, Christopher W.

    2013-01-01

    • Premise of the study: The genus Ficus (fig trees) comprises ca. 750 species of trees, vines, and stranglers found in tropical forests throughout the world. Fig trees are keystone species in many tropical forests, and their relationship with host-specific wasp pollinators has received much attention, although many questions remain unresolved regarding the levels of host specificity, cospeciation, and the role of hybridization in fig and wasp speciation. We developed exon-primed intron-crossing (EPIC) markers to obtain phylogenetic resolution needed to address these questions. • Methods and Results: Expressed sequence tags (ESTs) from F. elastica were compared to Arabidopsis and Populus genomes to locate introns and to design primers in flanking exons. Primer pairs for 80 EPIC markers were tested in samples from divergent clades within Ficus and the outgroup Poulsenia (Moraceae). • Conclusions: Thirty-one EPIC markers were successfully sequenced across Ficus, and 29 of the markers also amplified in Poulsenia, indicating broad transferability within Moraceae. All of the EPIC markers were polymorphic and showed levels of polymorphism similar to that of the widely used internal transcribed spacer (ITS). PMID:25202490

  4. The thin and medium filters of the EPIC camera on-board XMM-Newton: measured performance after more than 15 years of operation

    NASA Astrophysics Data System (ADS)

    Barbera, Marco; Gastaldello, Fabio; Sciortino, Luisa; Agnello, Simonpietro; Buscarino, Gianpiero; Collura, Alfonso; La Palombara, Nicola; Cicero, Ugo Lo; Sartore, Nicola; Tiengo, Andrea; Varisco, Salvatore; Venezia, Anna Maria

    2016-10-01

    After more than 15 years of operation of the EPIC camera on board the XMM-Newton X-ray observatory, we have reviewed the status of its Thin and Medium filters. We have selected a set of Thin and Medium back-up filters among those still available in the EPIC consortium and have started a program to investigate their status by different laboratory measurements including: UV/VIS transmission, Raman scattering, X-Ray Photoelectron Spectroscopy, and Atomic Force Microscopy. Furthermore, we have investigated the status of the EPIC flight filters by performing an analysis of the optical loading in the PN offset maps to gauge variations in the optical and UV transmission. We both investigated repeated observations of single optically bright targets and performed a statistical analysis of the extent of loading versus visual magnitude at different epochs. We report the results of the measurements conducted up to now. Most notably, we find no evidence for change in the UV/VIS transmission of the back-up filters in ground tests spanning a 2 year period and we find no evidence for change in the optical transmission of the thin filter of the EPIC-pn camera from 2002 to 2012. We point out some lessons learned for the development and calibration programs of filters for X-ray detectors in future Astronomy missions.

  5. PLTW and Epics-High: Curriculum Comparisons to Support Problem Solving in the Context of Engineering Design. Research in Engineering and Technology Education

    ERIC Educational Resources Information Center

    Kelley, Todd; Brenner, Daniel C.; Pieper, Jon T.

    2010-01-01

    A comparative study was conducted to compare two approaches to engineering design curriculum between different schools (inter-school) and between two curricular approaches, "Project Lead the Way" (PLTW) and "Engineering Projects in Community Service" (EPIC High) (inter-curricular). The researchers collected curriculum…

  6. Excerpts from "The Lewis and Clark Journals: An Epic of Discovery, the Abridgment of the Definitive Nebraska Edition": The Journey across the Plains

    ERIC Educational Resources Information Center

    Moulton, Gary E.

    2003-01-01

    This article contains excerpts from "The Lewis and Clark Journals: An Epic of Discovery, The Abridgment of the Definitive Nebraska Edition," published by the University of Nebraska Press in 2003. Editor Gary E. Moulton chose a few daily entries from the journals to highlight the expedition from May 14-October 12, 1804.

  7. The spectral invariant approximation within canopy radiative transfer to support the use of the EPIC/DSCOVR oxygen B-band for monitoring vegetation

    NASA Astrophysics Data System (ADS)

    Marshak, Alexander; Knyazikhin, Yuri

    2017-04-01

    EPIC (Earth Polychromatic Imaging Camera) is a 10-channel spectroradiometer onboard DSCOVR (Deep Space Climate Observatory) spacecraft. In addition to the near-infrared (NIR, 780 nm) and the 'red' (680 nm) channels, EPIC also has the O2 A-band (764±0.2 nm) and B-band (687.75±0.2 nm). The EPIC Normalized Difference Vegetation Index (NDVI) is defined as the difference between NIR and 'red' channels normalized to their sum. However, the use of the O2 B-band instead of the 'red' channel mitigates the effect of atmosphere on remote sensing of surface reflectance because O2 reduces contribution from the radiation scattered by the atmosphere. Applying the radiative transfer theory and the spectral invariant approximation to EPIC observations, the paper provides supportive arguments for using the O2 band instead of the red channel for monitoring vegetation dynamics. Our results suggest that the use of the O2 B-band enhances the sensitivity of the top-of-atmosphere NDVI to the presence of vegetation.

  8. Origin of central abundances in the hot intra-cluster medium. I. Individual and average abundance ratios from XMM-Newton EPIC

    NASA Astrophysics Data System (ADS)

    Mernier, F.; de Plaa, J.; Pinto, C.; Kaastra, J. S.; Kosec, P.; Zhang, Y.-Y.; Mao, J.; Werner, N.

    2016-08-01

    The hot intra-cluster medium (ICM) is rich in metals, which are synthesised by supernovae (SNe) explosions and accumulate over time into the deep gravitational potential well of clusters of galaxies. Since most of the elements visible in X-rays are formed by type Ia (SNIa) and/or core-collapse (SNcc) supernovae, measuring their abundances gives us direct information on the nucleosynthesis products of billions of SNe since the epoch of the star formation peak (z ~ 2-3). In this study, we use the EPIC and RGS instruments on board XMM-Newton to measure the abundances of nine elements (O, Ne, Mg, Si, S, Ar, Ca, Fe, and Ni) from a sample of 44 nearby cool-core galaxy clusters, groups, and elliptical galaxies. We find that the Fe abundance shows a large scatter (~20-40%) over the sample, within 0.2r500 and especially 0.05r500. Unlike the absolute Fe abundance, the abundance ratios (X/Fe) are uniform over the considered temperature range (~0.6-8 keV) and with a limited scatter. In addition to an unprecedented treatment of systematic uncertainties, we provide the most accurate abundance ratios measured so far in the ICM, including Cr/Fe and Mn/Fe which we firmly detected (>4σ with MOS and pn independently). We find that Cr/Fe, Mn/Fe, and Ni/Fe differ significantly from the proto-solar values. However, the large uncertainties in the proto-solar abundances prevent us from making a robust comparison between the local and the intra-cluster chemical enrichments. We also note that, interestingly, and despite the large net exposure time (~4.5 Ms) of our dataset, no line emission feature is seen around ~3.5 keV.

  9. Helicobacter pylori infection, chronic corpus atrophic gastritis and pancreatic cancer risk in the European Prospective Investigation into Cancer and Nutrition (EPIC) cohort: A nested case-control study.

    PubMed

    Huang, Jiaqi; Zagai, Ulrika; Hallmans, Göran; Nyrén, Olof; Engstrand, Lars; Stolzenberg-Solomon, Rachael; Duell, Eric J; Overvad, Kim; Katzke, Verena A; Kaaks, Rudolf; Jenab, Mazda; Park, Jin Young; Murillo, Raul; Trichopoulou, Antonia; Lagiou, Pagona; Bamia, Christina; Bradbury, Kathryn E; Riboli, Elio; Aune, Dagfinn; Tsilidis, Konstantinos K; Capellá, Gabriel; Agudo, Antonio; Krogh, Vittorio; Palli, Domenico; Panico, Salvatore; Weiderpass, Elisabete; Tjønneland, Anne; Olsen, Anja; Martínez, Begoña; Redondo-Sanchez, Daniel; Chirlaque, Maria-Dolores; Hm Peeters, Petra; Regnér, Sara; Lindkvist, Björn; Naccarati, Alessio; Ardanaz, Eva; Larrañaga, Nerea; Boutron-Ruault, Marie-Christine; Rebours, Vinciane; Barré, Amélie; Bueno-de-Mesquita, H B As; Ye, Weimin

    2017-04-15

    The association between H. pylori infection and pancreatic cancer risk remains controversial. We conducted a nested case-control study with 448 pancreatic cancer cases and their individually matched control subjects, based on the European Prospective Investigation into Cancer and Nutrition (EPIC) cohort, to determine whether there was an altered pancreatic cancer risk associated with H. pylori infection and chronic corpus atrophic gastritis. Conditional logistic regression models were applied to calculate odds ratios (ORs) and corresponding 95% confidence intervals (CIs), adjusted for matching factors and other potential confounders. Our results showed that pancreatic cancer risk was neither associated with H. pylori seropositivity (OR = 0.96; 95% CI: 0.70, 1.31) nor CagA seropositivity (OR = 1.07; 95% CI: 0.77, 1.48). We also did not find any excess risk among individuals seropositive for H. pylori but seronegative for CagA, compared with the group seronegative for both antibodies (OR = 0.94; 95% CI: 0.63, 1.38). However, we found that chronic corpus atrophic gastritis was non-significantly associated with an increased pancreatic cancer risk (OR = 1.35; 95% CI: 0.77, 2.37), and although based on small numbers, the excess risk was particularly marked among individuals seronegative for both H. pylori and CagA (OR = 5.66; 95% CI: 1.59, 20.19, p value for interaction < 0.01). Our findings provided evidence supporting the null association between H. pylori infection and pancreatic cancer risk in western European populations. However, the suggested association between chronic corpus atrophic gastritis and pancreatic cancer risk warrants independent verification in future studies, and, if confirmed, further studies on the underlying mechanisms.

  10. The influence of Ryukyu subduction on magma genesis in the Northern Taiwan Volcanic Zone and Middle Okinawa Trough - Evidence from boron isotopes

    NASA Astrophysics Data System (ADS)

    Pi, Ju-Lien; You, Chen-Feng; Wang, Kuo-Lung

    2016-09-01

    Boron (B) is an excellent geochemical tracer for investigating crustal recycling processes at convergent margins, due to its high fluid mobility under high P-T conditions, distinct elemental abundances and isotopic compositions in the mantle wedge and subducting slabs. The Northern Taiwan Volcanic Zone (NTVZ), wherein the nature of magma genesis has long been a topic of debate, is located at the rear side of the Okinawa Trough (OT), an atypical back-arc rift in the Ryukyu subduction system. In this study, B and B isotopes (δ11B) were measured in 19 volcanic rocks collected from the NTVZ and the middle Okinawa Trough (MOT) to assess the influence of the Ryukyu subduction system on magma genesis. The B concentrations in the MOT and NTVZ volcanic rocks are 5.8 to 13.6 mg/L and 2.2 to 48.6 mg/L, respectively. The large B abundances variation in the NTVZ was caused mainly by variable degrees of partial melting. The Nb/B and δ11B in the MOT have small ranges of 0.5 to 0.6 and - 2.7‰ to 0.2‰, respectively, whereas they range widely from 0.4 to 2.5 and from - 8.6‰ to 2.4‰, respectively in the NTVZ. These Nb/B values suggest that the magma contains a smaller subduction component than that normally observed in arcs, although this component is still more substantial than in a typical back-arc setting. The δ11B results indicate insignificant influence of the subducting Philippine Sea Plate at 2.6 Ma, but it becomes more substantial later in the NTVZ. The mixing proportions of sediment derived fluids in onshore volcanoes in the NTVZ imply a rather heterogeneous mantle wedge near the plate boundary, most likely due to either a heterogeneous source of slab derived fluids or more complicated mantle flow. A substantial B flux from the subducting slab in the incipient back-arc rifting in the MOT and NTVZ may reflect characteristics of a cold, steep and fast subducting slab, which may be capable of carrying volatiles efficiently into greater depth in subduction zones. The

  11. Construction of a Matched Global Cloud and Radiance Product from LEO/GEO and EPIC Observations to Estimate Daytime Earth Radiation Budget from DSCOVR

    NASA Technical Reports Server (NTRS)

    Duda, David P.; Khlopenkov, Konstantin V.; Thiemann, Mandana; Palikonda, Rabindra; Sun-Mack, Sunny; Minnis, Patrick; Su, Wenying

    2016-01-01

    With the launch of the Deep Space Climate Observatory (DSCOVR), new estimates of the daytime Earth radiation budget can be computed from a combination of measurements from the two Earth-observing sensors onboard the spacecraft, the Earth Polychromatic Imaging Camera (EPIC) and the National Institute of Standards and Technology Advanced Radiometer (NISTAR). Although these instruments can provide accurate top-of-atmosphere (TOA) radiance measurements, they lack sufficient resolution to provide details on small-scale surface and cloud properties. Previous studies have shown that these properties have a strong influence on the anisotropy of the radiation at the TOA, and ignoring such effects can result in large TOA-flux errors. To overcome these effects, high-resolution scene identification is needed for accurate Earth radiation budget estimation. Selected radiance and cloud property data measured and derived from several low earth orbit (LEO, including NASA Terra and Aqua MODIS, NOAA AVHRR) and geosynchronous (GEO, including GOES (east and west), METEOSAT, INSAT-3D, MTSAT-2, and HIMAWARI-8) satellite imagers were collected to create hourly 5-km resolution global composites of data necessary to compute angular distribution models (ADM) for reflected shortwave (SW) and longwave (LW) radiation. The satellite data provide an independent source of radiance measurements and scene identification information necessary to construct ADMs that are used to determine the daytime Earth radiation budget. To optimize spatial matching between EPIC measurements and the high-resolution composite cloud properties, LEO/GEO retrievals within the EPIC fields of view (FOV) are convolved to the EPIC point spread function (PSF) in a similar manner to the Clouds and the Earth's Radiant Energy System (CERES) Single Scanner Footprint TOA/Surface Fluxes and Clouds (SSF) product. Examples of the merged LEO/GEO/EPIC product will be presented, describing the chosen radiance and cloud properties and

  12. The K2 Ecliptic Plane Input Catalog (EPIC) and Stellar Classifications of 138,600 Targets in Campaigns 1-8

    NASA Astrophysics Data System (ADS)

    Huber, Daniel; Bryson, Stephen T.; Haas, Michael R.; Barclay, Thomas; Barentsen, Geert; Howell, Steve B.; Sharma, Sanjib; Stello, Dennis; Thompson, Susan E.

    2016-05-01

    The K2 Mission uses the Kepler spacecraft to obtain high-precision photometry over ≈80 day campaigns in the ecliptic plane. The Ecliptic Plane Input Catalog (EPIC) provides coordinates, photometry, and kinematics based on a federation of all-sky catalogs to support target selection and target management for the K2 mission. We describe the construction of the EPIC, as well as modifications and shortcomings of the catalog. Kepler magnitudes (Kp) are shown to be accurate to ≈0.1 mag for the Kepler field, and the EPIC is typically complete to Kp ≈ 17 (Kp ≈ 19 for campaigns covered by Sloan Digital Sky Survey). We furthermore classify 138,600 targets in Campaigns 1-8 (≈88% of the full target sample) using colors, proper motions, spectroscopy, parallaxes, and galactic population synthesis models, with typical uncertainties for G-type stars of ≈3% in {T}{{eff}}, ≈0.3 dex in {log} g, ≈40% in radius, ≈10% in mass, and ≈40% in distance. Our results show that stars targeted by K2 are dominated by K-M dwarfs (≈41% of all selected targets), F-G dwarfs (≈36%), and K giants (≈21%), consistent with key K2 science programs to search for transiting exoplanets and galactic archeology studies using oscillating red giants. However, we find significant variation of the fraction of cool dwarfs with galactic latitude, indicating a target selection bias due to interstellar reddening and increased contamination by giant stars near the galactic plane. We discuss possible systematic errors in the derived stellar properties, and differences with published classifications for K2 exoplanet host stars. The EPIC is hosted at the Mikulski Archive for Space Telescopes (MAST): http://archive.stsci.edu/k2/epic/search.php.

  13. Droughts, epic droughts and droughty centuries - lessons from a California paleoclimatic record: a PACLIM 2001 meeting report

    USGS Publications Warehouse

    Dettinger, M.D.

    2001-01-01

    During the early 1990s (but echoing studies by S.T. Harding at the University of California, from as early as the 1930s), several lines of paleoclimate evidence in and around the Sierra Nevada Range have provided the water community in California with some real horror stories. By studying ancient tree stumps submerged in Lake Tahoe and Tenaya Lake, stumps that were emerging from Mono Lake during its recent decline, and stumps that were exhumed in the Walker River bed during the floods of 1997, paleoclimatologists like Scott Stine of California State University, Hayward, assembled a picture of epic droughts in the central Sierra Nevada during the medieval period. These droughts had to be severe to drop water levels in the lakes and rivers low enough for the trees to grow in the first place, and then had to last for hundreds of years to explain tree-ring counts in these sizeable stumps. Worse yet, the evidence suggested at least two such epic droughts, one ending close to 1100 and the other close to 1350. These epic droughts challenged paleoclimatologists, as well as modern climatologists and hydrologists, to understand and, ultimately, to determine the likelihood that such droughts might recur in the foreseeable future. The first challenge, however, was to verify that such droughts were more than local events and as extreme as suggested. At this year’s Pacific Climate (PACLIM) Workshop, held March 18–21, 2001, at Asilomar (Pacific Grove, Calif.), special sessions brought together scientists to compare paleoclimatic reconstructions of ancient droughts and pluvial (wet) epidodes to try to determine the nature of decadal and centennial climate fluctuations in western North America, with emphasis on California. A companion session brought together modern climatologists to report on the latest explanations (and evidence) for decadal climate variations during the instrumental era of the 20th century. PACLIM is an annual workshop that, since 1983, has brought together

  14. Particle-induced X-ray emission analysis of elements in plasma from wild and captive sea turtles (Eretmochelys imbricata, Chelonia mydas, and Caretta caretta) in Okinawa, Japan.

    PubMed

    Suzuki, Kazuyuki; Noda, Jun; Yanagisawa, Makio; Kawazu, Isao; Sera, Kouichiro; Fukui, Daisuke; Asakawa, Mitsuhiko; Yokota, Hiroshi

    2012-09-01

    The aim of this study was to evaluate the reliability of direct determination of trace and major element concentrations in plasma samples from wild (six hawksbill, nine green, and nine loggerhead) and captive sea turtles (25 howksbill, five green, and three loggerhead) in Okinawa, Japan. The particle induced X-ray emission method allowed detection of 23 trace and major elements (Al, As, Br, Ca, Cl, Cr, Cu, Fe, Hg, K, Mg, Mn, Mo, Ni, P, Pb, S, Se, Si, Sr, Ti, Y, and Zn). The wild sea turtles were found to have high concentrations of As and Pb in plasma compared with captive, but there were no significant changes in the Al and Hg concentrations. Loggerhead sea turtles were found to have significantly higher accumulation of As and Pb in plasma in comparison to other species. These findings may be useful when adjusting environmental and species-related factors in severely polluted marine ecosystems. Our results indicate that measuring the plasma As and Pb concentrations in wild sea turtles might be of help to assess the level of pollution in marine ecosystems, keeping in mind that loggerhead sea turtles had been shown to have higher levels of As and Pb in plasma.

  15. Multi-lineages of Shiikuwasha (Citrus depressa Hayata) evaluated by using whole chloroplast genome sequences and its bio-diversity in Okinawa, Japan

    PubMed Central

    Ishikawa, Ryuji; Badenoch, Nathan; Miyagi, Kunimasa; Medoruma, Kaname; Osada, Toshiki; Onishi, Masayuki

    2016-01-01

    Shiikuwasha (Citrus depressa Hayata) is distributed from the South-west of the Japanese archipelago to Taiwan. In this study, re-sequencing against the orange (C. sinensis (L.) Osbeck) chloroplast genome was applied to one superior landrace of Shiikuwasha cultivated in Oku ward, Okinawa, Japan. The chloroplast genome of the landrace was estimated to comprise 160,118 bp, including 48 indels and 71 nucleotide substitutions against the reference genome. The presumptive chloroplast indels were confirmed by subsequent experiments, and these identified multiple maternal lineages among other landraces. Some of the orange SSR markers were available for genotyping of other superior landraces and were able to distinguish among them. These molecular markers were then applied for evaluation of genetic diversity among wild and cultivated Shiikuwasha accessions. Except for Oku ward, the cultivated populations were found to have lost their genetic diversity in comparison with wild populations. Groves in Oku ward maintained, or showed even higher genetic diversity than wild accessions in the surrounding areas by the force of villagers. PMID:27795674

  16. Resistance phenotypes and genotypes among multiple-antimicrobial-resistant Salmonella enterica subspecies enterica serovar Choleraesuis strains isolated between 2008 and 2012 from slaughter pigs in Okinawa Prefecture, Japan

    PubMed Central

    MATAYOSHI, Masanao; KITANO, Takashi; SASAKI, Tetsu; NAKAMURA, Masaji

    2015-01-01

    A total of 349 Salmonella enterica subspecies enterica serovar Choleraesuis (S. Choleraesuis) strains, which were isolated between 2008 and 2012 from 349 pigs at two slaughterhouses in Okinawa Prefecture, Japan, were investigated for antimicrobial susceptibility and the presence of antimicrobial resistance genes. All isolates were resistant to at least four antimicrobial agents. The antimicrobial agents for which isolates showed a high incidence of resistance were as follows: ampicillin (100%) and streptomycin (100%), followed by gentamicin (99.7%), oxytetracycline (99.7%), sulfamethoxazole/trimethoprim (99.4%), nalidixic acid (40.1%) and oxolinic acid (40.1%). All isolates were sensitive to cefuroxime, ceftiofur, colistin, fosfomycin, enrofloxacin, orbifloxacin and danofloxacin. The predominant resistance phenotypes and genotypes were: resistance to ampicillin, streptomycin, gentamicin, oxytetracycline and sulfamethoxazole/trimethoprim (58.5%, 204/349) and blaTEM-strA-strB-aadA1-aadA2-aacC2-tet (B)-sul1-sul2-dhfrXII-dhfrXIII (36.1%, 126/349). The quinolone resistance-determining regions (QRDRs) of gyrA, gyrB, parC and parE of the quinolone-resistant isolates (n=12) showed amino acid substitutions of Ser-83→Phe or Asp-87→Tyr in GyrA and Ser-107→Ala in ParC. To our knowledge, this is the first report on the molecular characterization of antimicrobial resistance among S. Choleraesuis strains in Japan. PMID:25715779

  17. Archaeal Diversity and Distribution along Thermal and Geochemical Gradients in Hydrothermal Sediments at the Yonaguni Knoll IV Hydrothermal Field in the Southern Okinawa Trough▿ †

    PubMed Central

    Nunoura, Takuro; Oida, Hanako; Nakaseama, Miwako; Kosaka, Ayako; Ohkubo, Satoru B.; Kikuchi, Toru; Kazama, Hiromi; Hosoi-Tanabe, Shoko; Nakamura, Ko-ichi; Kinoshita, Masataka; Hirayama, Hisako; Inagaki, Fumio; Tsunogai, Urumu; Ishibashi, Jun-ichiro; Takai, Ken

    2010-01-01

    A variety of archaeal lineages have been identified using culture-independent molecular phylogenetic surveys of microbial habitats occurring in deep-sea hydrothermal environments such as chimney structures, sediments, vent emissions, and chemosynthetic macrofauna. With the exception of a few taxa, most of these archaea have not yet been cultivated, and their physiological and metabolic traits remain unclear. In this study, phylogenetic diversity and distribution profiles of the archaeal genes encoding small subunit (SSU) rRNA, methyl coenzyme A (CoA) reductase subunit A, and the ammonia monooxygenase large subunit were characterized in hydrothermally influenced sediments at the Yonaguni Knoll IV hydrothermal field in the Southern Okinawa Trough. Sediment cores were collected at distances of 0.5, 2, or 5 m from a vent emission (90°C). A moderate temperature gradient extends both horizontally and vertically (5 to 69°C), indicating the existence of moderate mixing between the hydrothermal fluid and the ambient sediment pore water. The mixing of reductive hot hydrothermal fluid and cold ambient sediment pore water establishes a wide spectrum of physical and chemical conditions in the microbial habitats that were investigated. Under these different physico-chemical conditions, variability in archaeal phylotype composition was observed. The relationship between the physical and chemical parameters and the archaeal phylotype composition provides important insight into the ecophysiological requirements of uncultivated archaeal lineages in deep-sea hydrothermal vent environments, giving clues for approximating culture conditions to be used in future culturing efforts. PMID:20023079

  18. The Okinawa study: an estimation of noise-induced hearing loss on the basis of the records of aircraft noise exposure around Kadena Air Base

    NASA Astrophysics Data System (ADS)

    Hiramatsu, K.; Matsui, T.; Ito, A.; Miyakita, T.; Osada, Y.; Yamamoto, T.

    2004-10-01

    Aircraft noise measurements were recorded at the residential areas in the vicinity of Kadena Air Base, Okinawa in 1968 and 1972 at the time of the Vietnam war. The estimated equivalent continuous A-weighted sound pressure level LAeq for 24 h was 85 dB.The time history of sound level during 24 h was estimated from the measurement conducted in 1968, and the sound level was converted into the spectrum level at the centre frequency of the critical band of temporary threshold shift (TTS) using the results of spectrum analysis of aircraft noise operated at the airfield. With the information of spectrum level and its time history, TTS was calculated as a function of time and level change. The permanent threshold shift was also calculated by means of Robinson's method and ISO's method. The results indicate the noise exposure around Kadena Air Base was hazardous to hearing and is likely to have caused hearing loss to people living in its vicinity.

  19. A new genus and new species of Paguridae (Crustacea: Decapoda: Anomura) from shallow subtidal waters in Okinawa Island, the Ryukyu Islands, Japan.

    PubMed

    Komai, Tomoyuki

    2015-02-11

    During a survey on decapod crustacean fauna of shallow coral reefs and nearby environments in Okinawa Island, Ryukyu Archipelago, Japan, four specimens of a small but distinctive undescribed species of pagurid hermit crab, which could not be referred to any known genus, were collected. The new taxon, Eutrichopagurus shirakawai n. gen., n. sp., is described and illustrated herein. The new genus is characterized by the possession of 11 pairs of deeply quadriserial phyllobranchiate gills, the third maxilliped with well-developed crista dentata and one or two accessory teeth on the ischium, the presence of unpaired left gonopore in the female, the absence of paired first pleopods in the female, and the telson with prominent tuft of setae on the lateral margin of the posterior lobes; the male is unknown at present. It appears close to Trichopagurus de Saint Laurent, 1968, but the deeply quadriserial gills immediately distinguish Eutrichopagurus from Trichopagurus. The new genus is also compared with other genera characterized by the possession of 11 pairs of quadriserial phyllobranchiate gills and the lack of paired first pleopods in females.

  20. Resistance phenotypes and genotypes among multiple-antimicrobial-resistant Salmonella enterica subspecies enterica serovar Choleraesuis strains isolated between 2008 and 2012 from slaughter pigs in Okinawa Prefecture, Japan.

    PubMed

    Matayoshi, Masanao; Kitano, Takashi; Sasaki, Tetsu; Nakamura, Masaji

    2015-06-01

    A total of 349 Salmonella enterica subspecies enterica serovar Choleraesuis (S. Choleraesuis) strains, which were isolated between 2008 and 2012 from 349 pigs at two slaughterhouses in Okinawa Prefecture, Japan, were investigated for antimicrobial susceptibility and the presence of antimicrobial resistance genes. All isolates were resistant to at least four antimicrobial agents. The antimicrobial agents for which isolates showed a high incidence of resistance were as follows: ampicillin (100%) and streptomycin (100%), followed by gentamicin (99.7%), oxytetracycline (99.7%), sulfamethoxazole/trimethoprim (99.4%), nalidixic acid (40.1%) and oxolinic acid (40.1%). All isolates were sensitive to cefuroxime, ceftiofur, colistin, fosfomycin, enrofloxacin, orbifloxacin and danofloxacin. The predominant resistance phenotypes and genotypes were: resistance to ampicillin, streptomycin, gentamicin, oxytetracycline and sulfamethoxazole/trimethoprim (58.5%, 204/349) and blaTEM-strA-strB-aadA1-aadA2-aacC2-tet (B)-sul1-sul2-dhfrXII-dhfrXIII (36.1%, 126/349). The quinolone resistance-determining regions (QRDRs) of gyrA, gyrB, parC and parE of the quinolone-resistant isolates (n=12) showed amino acid substitutions of Ser-83→Phe or Asp-87→Tyr in GyrA and Ser-107→Ala in ParC. To our knowledge, this is the first report on the molecular characterization of antimicrobial resistance among S. Choleraesuis strains in Japan.

  1. Multi-lineages of Shiikuwasha (Citrus depressa Hayata) evaluated by using whole chloroplast genome sequences and its bio-diversity in Okinawa, Japan.

    PubMed

    Ishikawa, Ryuji; Badenoch, Nathan; Miyagi, Kunimasa; Medoruma, Kaname; Osada, Toshiki; Onishi, Masayuki

    2016-09-01

    Shiikuwasha (Citrus depressa Hayata) is distributed from the South-west of the Japanese archipelago to Taiwan. In this study, re-sequencing against the orange (C. sinensis (L.) Osbeck) chloroplast genome was applied to one superior landrace of Shiikuwasha cultivated in Oku ward, Okinawa, Japan. The chloroplast genome of the landrace was estimated to comprise 160,118 bp, including 48 indels and 71 nucleotide substitutions against the reference genome. The presumptive chloroplast indels were confirmed by subsequent experiments, and these identified multiple maternal lineages among other landraces. Some of the orange SSR markers were available for genotyping of other superior landraces and were able to distinguish among them. These molecular markers were then applied for evaluation of genetic diversity among wild and cultivated Shiikuwasha accessions. Except for Oku ward, the cultivated populations were found to have lost their genetic diversity in comparison with wild populations. Groves in Oku ward maintained, or showed even higher genetic diversity than wild accessions in the surrounding areas by the force of villagers.

  2. Photochemical Formation of Hydroxyl Radical, Hydrogen Peroxide and Fe(II) in the Sea Surface Microlayer (SML) Collected in Okinawa, Japan

    NASA Astrophysics Data System (ADS)

    Higaonna, Y.; Tachibana, C.; Kasaba, T.; Ishikawa, R.; Arakaki, T.

    2014-12-01

    The sea surface microlayer (SML) covers upper 1 to 1000 μm deep boundary layer of the ocean, where important biogeochemical processes take place. Photo-chemical reactions are activated by sunlight, so it is assumed that more photo-chemical reactions occur in SML than underlying bulk seawater (bulk). We initiated a study to understand chemical changes occurring in the SML by studying photochemical formation of oxidants such as hydrogen peroxide and hydroxyl radical (OH), both of which react with various organic substances and determine their lifetimes. Since OH can be formed by reaction between hydrogen peroxide and Fe(II), Fe(II) photoformation was also studied. We collected SML samples using a widely-used glass plate method and bulk samples by using a polyethylene bottles near the coast of Okinawa Island, Japan. Results showed that dissolved organic carbon (DOC) concentrations in the SML were about twice those of bulk seawater samples. Hydrogen peroxide formation in the SML samples was ca. 2.8 times faster than the bulk seawater samples. On the other hand, Fe(II) and OH photoformation kinetics was similar for both SML and bulk samples. Although it was predicted that more OH could be formed from reaction between hydrogen peroxide and Fe(II), OH formation kinetics was similar in both SML and bulk, suggesting that either Fe(II) did not react with hydrogen peroxide or reaction is very slow, possibly by forming a complex with organic compounds in the SML and bulk.

  3. Program Epicshow: A computer code to allow interactive viewing of the EPIC data libraries (version 94-1)

    SciTech Connect

    Cullen, D.E.

    1994-02-01

    This report discusses the following on the program EPICSHOW: The EPIC System Overview; The Epicshow code; Contents of the Data Bases; Implementing Epicshow; What is Epicshow?; Brief Instruction to the Menu Options; A Guided tour of Epicshow; Z+10, Z-10, etc.: Selecting a Target; Freeze!!!; Major, Minor, etc.: Selecting a Type of Data; Photon, Electron, etc.: Selecting a Projectile; Example Target and Projectile Output; Grids; 2 X 2; Zoom X and Show All; Points; Ratio; Lin/Log X and Y: Linear or Log Scaling; barn-1/cm:Microscopic or Macroscopic; Listing: Tabulated Output Listings; Pstscript: Postscript Output; Legend; Bigger and Smaller: Character Size; Bottoms Up and No Bottom; Interpolation of Data; Availability; Using your mouse; Size of Data Bases; Epicshow`s Standard Graphic Interface; and Postscript Output to Local Printer.

  4. Creating an EPICS Based Test Stand Development System for a BPM Digitizer of the Linac Coherent Light Source

    SciTech Connect

    Not Available

    2011-06-22

    The Linac Coherent Light Source (LCLS) is required to deliver a high quality electron beam for producing coherent X-rays. As a result, high resolution beam position monitoring is required. The Beam Position Monitor (BPM) digitizer acquires analog signals from the beam line and digitizes them to obtain beam position data. Although Matlab is currently being used to test the BPM digitizer?s functions and capability, the Controls Department at SLAC prefers to use Experimental Physics and Industrial Control Systems (EPICS). This paper discusses the transition of providing similar as well as enhanced functionalities, than those offered by Matlab, to test the digitizer. Altogether, the improved test stand development system can perform mathematical and statistical calculations with the waveform signals acquired from the digitizer and compute the fast Fourier transform (FFT) of the signals. Finally, logging of meaningful data into files has been added.

  5. Psychosocial aetiology of chronic disease: a pragmatic approach to the assessment of lifetime affective morbidity in an EPIC component study

    PubMed Central

    Surtees, P; Wainwright, N; Brayne, C

    2000-01-01

    OBJECTIVES—The Health and Life Experiences Questionnaire (HLEQ) was developed for use in a prospective cohort study of 25 000 men and women living in Norfolk and forms a component study of the European Prospective Investigation into Cancer and Nutrition (EPIC). The HLEQ includes an assessment of mood status over the life course allowing a limited capacity for the imposition of diagnostic criteria to enable eventual evaluation of mental health status for chronic disease outcomes. This paper reports estimates of HLEQ Major Depressive Disorder (MDD) prevalence and compares them with those obtained through interviewer-based methods. In addition evidence for the impact of recall, clustering or cohort effects on these estimates are examined.
PARTICIPANTS—3491 eligible respondents to EPIC in Norfolk, aged 45-74 years, recruited from the first five general practices who completed the HLEQ.
MAIN RESULTS—MDD prevalence estimates were found to be closely comparable to those obtained recently (by interview) in the UK and to those lifetime MDD rates determined through international studies. Risk of MDD onset was found to vary with age as expected from earlier studies using interviewer-based assessments. Limited evidence was found to show that the distribution of first onset MDD episodes were compressed during the immediate pre-assessment period. Results were also consistent with previous evidence demonstrating the raised risk of MDD among women and of the decline in gender differences with advancing age.
CONCLUSIONS—These results suggest that estimates of putative MDD diagnostic status, derived through the HLEQ, and of associated demographic risk are similar to those derived by more intensive and costly assessment methods. Implications for the future study of MDD both as an outcome and as a risk factor for chronic disease are discussed.


Keywords: depression; epidemiology; prevalence PMID:10715744

  6. epic3: national evidence-based guidelines for preventing healthcare-associated infections in NHS hospitals in England.

    PubMed

    Loveday, H P; Wilson, J A; Pratt, R J; Golsorkhi, M; Tingle, A; Bak, A; Browne, J; Prieto, J; Wilcox, M; UK Department of Health

    2014-01-01

    National evidence-based guidelines for preventing healthcare-associated infections (HCAI) in National Health Service (NHS) hospitals in England were originally commissioned by the Department of Health and developed during 1998-2000 by a nurse-led multi-professional team of researchers and specialist clinicians. Following extensive consultation, they were first published in January 2001(1) and updated in 2007.(2) A cardinal feature of evidence-based guidelines is that they are subject to timely review in order that new research evidence and technological advances can be identified, appraised and, if shown to be effective for the prevention of HCAI, incorporated into amended guidelines. Periodically updating the evidence base and guideline recommendations is essential in order to maintain their validity and authority. The Department of Health commissioned a review of new evidence and we have updated the evidence base for making infection prevention and control recommendations. A critical assessment of the updated evidence indicated that the epic2 guidelines published in 2007 remain robust, relevant and appropriate, but some guideline recommendations required adjustments to enhance clarity and a number of new recommendations were required. These have been clearly identified in the text. In addition, the synopses of evidence underpinning the guideline recommendations have been updated. These guidelines (epic3) provide comprehensive recommendations for preventing HCAI in hospital and other acute care settings based on the best currently available evidence. National evidence-based guidelines are broad principles of best practice that need to be integrated into local practice guidelines and audited to reduce variation in practice and maintain patient safety. Clinically effective infection prevention and control practice is an essential feature of patient protection. By incorporating these guidelines into routine daily clinical practice, patient safety can be enhanced and

  7. Biomarker patterns of inflammatory and metabolic pathways are associated with risk of colorectal cancer: results from the European Prospective Investigation into Cancer and Nutrition (EPIC).

    PubMed

    Aleksandrova, Krasimira; Jenab, Mazda; Bueno-de-Mesquita, H Bas; Fedirko, Veronika; Kaaks, Rudolf; Lukanova, Annekatrin; van Duijnhoven, Fränzel J B; Jansen, Eugene; Rinaldi, Sabina; Romieu, Isabelle; Ferrari, Pietro; Murphy, Neil; Gunter, Marc J; Riboli, Elio; Westhpal, Sabine; Overvad, Kim; Tjønneland, Anne; Halkjær, Jytte; Boutron-Ruault, Marie-Christine; Dossus, Laure; Racine, Antoine; Trichopoulou, Antonia; Bamia, Christina; Orfanos, Philippos; Agnoli, Claudia; Palli, Domenico; Panico, Salvatore; Tumino, Rosario; Vineis, Paolo; Peeters, Petra H; Duell, Eric J; Molina-Montes, Esther; Quirós, J Ramón; Dorronsoro, Miren; Chirlaque, Maria-Dolores; Barricarte, Aurelio; Ljuslinder, Ingrid; Palmqvist, Richard; Travis, Ruth C; Khaw, Kay-Tee; Wareham, Nicholas; Pischon, Tobias; Boeing, Heiner

    2014-04-01

    A number of biomarkers of inflammatory and metabolic pathways are individually related to higher risk of colorectal cancer (CRC); however, the association between biomarker patterns and CRC incidence has not been previously evaluated. Our study investigates the association of biomarker patterns with CRC in a prospective nested case-control study within the European Prospective Investigation into Cancer and Nutrition (EPIC). During median follow-up time of 7.0 (3.7-9.4) years, 1,260 incident CRC cases occurred and were matched to 1,260 controls using risk-set sampling. Pre-diagnostic measurements of C-peptide, glycated hemoglobin, triglycerides (TG), high-density lipoprotein cholesterol (HDL-C), C-reactive protein (CRP), reactive oxygen metabolites (ROM), insulin-like growth factor 1, adiponectin, leptin and soluble leptin receptor (sOB-R) were used to derive biomarker patterns from principal component analysis (PCA). The relation with CRC incidence was assessed using conditional logistic regression models. We identified four biomarker patterns 'HDL-C/Adiponectin fractions', 'ROM/CRP', 'TG/C-peptide' and 'leptin/sOB-R' to explain 60 % of the overall biomarker variance. In multivariable-adjusted logistic regression, the 'HDL-C/Adiponectin fractions', 'ROM/CRP' and 'leptin/sOB-R' patterns were associated with CRC risk [for the highest quartile vs the lowest, incidence rate ratio (IRR) = 0.69, 95 % CI 0.51-0.93, P-trend = 0.01; IRR = 1.70, 95 % CI 1.30-2.23, P-trend = 0.002; and IRR = 0.79, 95 % CI 0.58-1.07; P-trend = 0.05, respectively]. In contrast, the 'TG/C-peptide' pattern was not associated with CRC risk (IRR = 0.75, 95 % CI 0.56-1.00, P-trend = 0.24). After cases within the first 2 follow-up years were excluded, the 'ROM/CRP' pattern was no longer associated with CRC risk, suggesting potential influence of preclinical disease on these associations. By application of PCA, the study identified 'HDL-C/Adiponectin fractions', 'ROM/CRP' and 'leptin/sOB-R' as

  8. Assessment of mycobacterial interspersed repetitive unit-QUB markers to further discriminate the Beijing genotype in a population-based study of the genetic diversity of Mycobacterium tuberculosis clinical isolates from Okinawa, Ryukyu Islands, Japan.

    PubMed

    Millet, Julie; Miyagi-Shiohira, Chika; Yamane, Nobuhisa; Sola, Christophe; Rastogi, Nalin

    2007-11-01

    The present investigation focused on genetic diversity and drug resistance of 101 Mycobacterium tuberculosis strains isolated between July 2003 and February 2005 in the Okinawa prefecture, Ryukyu Islands, Japan. A high rate of clustering (87%, eight clusters, 2 to 69 strains/cluster) was observed upon spoligotyping; most of it was due to the lower discriminatory power of this method for the Beijing lineage (n = 72; 71.3% of the isolates). The remaining diversity was limited to seven clusters (two to five isolates/cluster), with the following distribution of major lineages: ill-defined T (n = 13; 12.8%), ancestral East African-Indian (n = 6; 5.9%), Haarlem (n = 4; 4%), Latin American-Mediterranean (n = 2; 2%), X1 (n = 1; 1%), and a total absence of the central Asian clade. Three remaining strains could not be classified on the basis of their spoligotype pattern and were labeled "unknown." Subtyping with mycobacterial interspersed repetitive units (MIRUs) in association with additional QUB minisatellites was performed to discriminate among the Beijing strains. Based on an "in-house" spoligotyping/MIRU database (n = 694 Beijing strains), eight highly discriminative MIRU loci for Beijing strains were selected (loci numbered 10, 16, 23, 26, 27, 31, 39, and 40). The highest discriminatory power (h) observed in our sample (n = 72; M-26, 0.385; M-10, 0.38; M-31, 0.255; M-16, 0.238) was too low, and 73.6% of the Beijing strains from Okinawa remained clustered. Typing of Beijing strains with additional QUB loci (with the exception of "one-copy" QUB-1451) resulted in higher discriminatory powers: QUB-11b, 0.68; QUB-11a, 0.656; QUB-26, 0.644; QUB-18, 0.553; QUB-4156, 0.5; and QUB-1895, 0.453. A definitive algorithm on the use of QUB markers to subtype Beijing isolates in expanded studies would shed light on their hypervariability, which may sometimes blur recognition between epidemiologically linked Beijing isolates. The total absence of multiple drug resistance among Beijing

  9. A new species of Labidocera (Copepoda, Calanoida, Pontellidae) collected from Okinawa, southwestern Japan, with establishment of five Indo-West Pacific species groups in the L.detruncata species complex.

    PubMed

    Hirabayashi, Takeshi; Ohtsuka, Susumu

    2014-01-01

    Labidocerachuraumi sp. n. is described from Okinawa, southwestern Japan. The female of the new species differs from other congeners in genital compound somite with right postero-lateral and left antero-lateral processes. The male is distinguished from other congeners by the structure of the fifth leg. This new species is assigned to a newly proposed species group, the Labidoceramadurae species group, within the Labidoceradetruncata species complex. In this species complex five Indo-West Pacific species groups are recognized (cervi, detruncata, gangetica, madurae, and pavo) and defined on the basis of difference in sexual dimorphism.

  10. Spatial Analysis of Weather-induced Annual and Decadal Average Yield Variability as Modeled by EPIC for Rain-fed Wheat in Europe

    NASA Astrophysics Data System (ADS)

    Khabarov, Nikolay; Balkovic, Juraj; Schmid, Erwin; Schwartz, Alexander; Obersteiner, Michael; Azevedo, Ligia B.

    2016-04-01

    In our analysis we evaluate the accuracy of near-term (decadal) average crop yield assessments as supported by the biophysical crop growth model EPIC. A spatial assessment of averages and variability has clear practical implications for agricultural producers and investors concerned with an estimation of the basic stochastic characteristics of a crop yield distribution. As a reliable weather projection for a time period of several years will apparently remain a challenge in the near future, we have employed the existing gridded datasets on historical weather as a best proxy for the current climate. Based on different weather inputs to EPIC, we analyzed the model runs for the rain-fed wheat for 1968-2007 employing AgGRID/GGCMI simulations using harmonized inputs and assumptions (weather datasets: GRASP and Princeton). We have explored the variability of historical ten-year yield averages in the past forty years as modeled by the EPIC model, and found that generally the ten-year average yield variability is less than 20% ((max-min)/average), whereas there are mid/low yielding areas with a higher ten-years average variability of 20-50%. The location of these spots of high variability differs between distinctive model-weather setups. Assuming that historical weather can be used as a proxy of the weather in the next ten years, a best possible EPIC-based assessment of a ten-year average yield is a range of 20% width ((max-min)/average). For some mid/low productive areas the range is up to 50% wide.

  11. Macrosomic Neonates Carry Increased Risk of Dental Caries in Early Childhood: Findings from a Cohort Study, the Okinawa Child Health Study, Japan

    PubMed Central

    Yokomichi, Hiroshi; Tanaka, Taichiro; Suzuki, Kohta; Akiyama, Tomoki; Yamagata, Zentaro

    2015-01-01

    Background Although many studies have discussed health risks in neonates with a low birth weight, few studies have focused on the risks in neonates with a high birth weight. The objective of this study was to determine whether differences in the incidence of dental caries in early childhood are associated with birth weight status. Methods A total of 117,175 children born in Okinawa Prefecture, Japan from 1997 to 2007 were included in this study. Medical professionals collected information about birth records, growth and development, parental child-rearing practices and dental health at 3 months, 18 months and 3 years of age. The risk of dental caries among neonates with macrosomia (birth weight ≥4000 g) was compared with that among neonates with normal weight (2500–3999 g). Sensitivity analyses included ‘large for gestational age’ (LGA, birth weight above the 90th percentile for gestational age), which was relative to ‘appropriate for gestational age’ (birth weight between 10th and 90th percentiles). Relative risks and relative risk increases were estimated by multivariate Poisson regression. Results At 3 years of age, the relative risk increases for dental caries after adjusting for confounding factors were 19% [95% confidence interval (CI), 11%–28%, P < 0.001] for macrosomic neonates and 12% (95% CI, 9%–16%, P < 0.001) for LGA neonates. Conclusion Macrosomia and LGA were associated with an increased risk of dental caries in early childhood. Particular attention should be paid to abnormally large neonates. PMID:26207737

  12. Microearthquake activity around Kueishantao island, offshore northeastern Taiwan: Insights into the volcano-tectonic interactions at the tip of the southern Okinawa Trough

    NASA Astrophysics Data System (ADS)

    Konstantinou, K. I.; Pan, C.-Y.; Lin, C.-H.

    2013-05-01

    Kueishantao is a volcanic island located offshore the northeastern coast of Taiwan and lies at the tip of the southern Okinawa Trough which is the back-arc basin of the Ryukyu subduction zone. Its last eruption occurred during the Holocene (~ 7 ka), hence Kueishantao can be considered as an active volcano. In an effort to better understand how magmatic processes may interact with the regional tectonics, a seismic network was installed in the area during early January 2008. This network consisted of 16 three-component seismometers located both on Kueishantao and the coast of northeastern Taiwan. One year of data was analyzed yielding 425 earthquakes whose P and S arrival times were manually picked and each event was located using a nonlinear probabilistic location method. In order to improve the location accuracy, the minimum 1-D velocity model for this dataset was derived and all earthquakes were relocated using this model. The results show a tight cluster of events near Kueishantao while the remaining earthquakes are scattered between the island and mainland Taiwan. The majority of hypocentral depths range between 2.5 and 10 km where the former depth coincides with the bottom of the shallow sedimentary layer and the latter with the ductile lower crust. Waveforms of the three largest events were also inverted for the determination of their deviatoric and full moment tensor. No statistically significant isotropic component was found, while two of the events can be explained by a double-couple source. The third event exhibited a low frequency content (< 10 Hz) and a large non-double-couple component suggesting fluid involvement at its source. A stress inversion of all available focal mechanisms in the area shows that fluid circulation in the upper crust generates a local stress field around Kueishantao facilitating the opening of cracks along the NW-SE direction of regional extension.

  13. Post-Drilling Changes in Seabed Landscape and Megabenthos in a Deep-Sea Hydrothermal System, the Iheya North Field, Okinawa Trough

    PubMed Central

    Nakajima, Ryota; Yamamoto, Hiroyuki; Kawagucci, Shinsuke; Takaya, Yutaro; Nozaki, Tatsuo; Chen, Chong; Fujikura, Katsunori; Miwa, Tetsuya; Takai, Ken

    2015-01-01

    There has been an increasing interest in seafloor exploitation such as mineral mining in deep-sea hydrothermal fields, but the environmental impact of anthropogenic disturbance to the seafloor is poorly known. In this study, the effect of such anthropogenic disturbance by scientific drilling operations (IODP Expedition 331) on seabed landscape and megafaunal habitation was surveyed for over 3 years using remotely operated vehicle video observation in a deep-sea hydrothermal field, the Iheya North field, in the Okinawa Trough. We focused on observations from a particular drilling site (Site C0014) where the most dynamic change of landscape and megafaunal habitation was observed among the drilling sites of IODP Exp. 331. No visible hydrothermal fluid discharge had been observed at the sedimentary seafloor at Site C0014, where Calyptogena clam colonies were known for more than 10 years, before the drilling event. After drilling commenced, the original Calyptogena colonies were completely buried by the drilling deposits. Several months after the drilling, diffusing high-temperature hydrothermal fluid began to discharge from the sedimentary subseafloor in the area of over 20 m from the drill holes, ‘artificially’ creating a new hydrothermal vent habitat. Widespread microbial mats developed on the seafloor with the diffusing hydrothermal fluids and the galatheid crab Shinkaia crosnieri endemic to vents dominated the new vent community. The previously soft, sedimentary seafloor was hardened probably due to barite/gypsum mineralization or silicification, becoming rough and undulated with many fissures after the drilling operation. Although the effects of the drilling operation on seabed landscape and megafaunal composition are probably confined to an area of maximally 30 m from the drill holes, the newly established hydrothermal vent ecosystem has already lasted 2 years and is like to continue to exist until the fluid discharge ceases and thus the ecosystem in the area

  14. Sea surface temperature variation during the last deglaciation in the southern Okinawa Trough: Modulation of high latitude teleconnections and the Kuroshio Current

    NASA Astrophysics Data System (ADS)

    Zhao, Jingtao; Li, Jun; Cai, Feng; Wei, Helong; Hu, Bangqi; Dou, Yanguang; Wang, Libo; Xiang, Rong; Cheng, Hongwei; Dong, Liang; Zhang, Chuanlun L.

    2015-11-01

    Three paleotemperature records (foraminiferal Mg/Ca, TEX86 and UK‧37) were generated for the past 17.3 ka in the southern Okinawa Trough (OT) using a sediment core (OKT-3) taken at a water depth of 1792 m. Temperature estimates based on the inorganic and organic indices for the OKT-3 core top sample approximated modern sea surface temperature (SST) and extended to the mixed layer (<50 m) in warmer seasons. Reconstructed SSTs from OKT-3 gradually increased towards the top of the core with lower values occurring during Heinrich Stadial 1 (HS1) and the Younger Dryas (YD). These values coincided with the glacial-interglacial cycles established by the Globigerinoides ruber δ18O curve. Notably, SSTs decreased during the BØlling-AllerØd (B-A) but warming occurred before and after the B-A, from approximately 16 to 14 ka and 12.5 to 10 ka. The SST cooling during the B-A corresponded to the timing of the Antarctic Cold Reversal (ACR), which is thought to be connected with melt water pulse 1a (MWP1a). The cooling was also concurrent with the spread of millennial-scale cold signals to the OT during the HS1 and YD periods, when widespread melt and collapse of Northern Hemisphere ice sheets occurred along with reduced Atlantic Meridional Overturning Circulation (AMOC) and a southward shift of the Intertropical Convergence Zone (ITCZ). The last deglaciation, which began approximately 16-15 ka BP in the OT, might mark the time when the Kuroshio Current (KC) began to strengthen.

  15. Description of Domibacillus iocasae sp. nov., isolated from the deep sea sediment of Okinawa Trough, and emended description of the genus Domibacillus.

    PubMed

    Sun, Qing-Lei; Sun, Li

    2015-12-04

    In this study, we reported a novel Gram-positive bacterium, designated as strain S6T, isolated from the deep sea sediment in Okinawa Trough. Growth of strain S6T occurred at 10-45 °C (optimum, 35 °C), pH 6.0-11.0 (optimum, 8.0), and with 0-8 % (w/v) NaCl (optimum, 3 %). Phylogenetic analysis based on 16S rRNA gene sequence indicated that strain S6T belonged to the genus Domibacillus. The closest phylogenetic neighbors of strain S6T were Domibacillus robiginosus DSM 25058T (98.6 %), D. indicus DSM 28032T (97.6 %), D. enclensis DSM 25145T (97.6 %), and D. tundrae DSM 29572T (97.6 %). The identities between strain S6T and other close members were below 96%. The values of DNA-DNA relatedness between strain S6T and its closest relatives in genus Domibacillus were well below 70 %. The genomic DNA G + C content of strain S6T was 44.4 mol%. MK-6 (87.4 %) was the major menaquinone of strain S6T. The polar lipids of strain S6T contained diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol mannosides, phosphatidylethanolamine, and three unknown phospholipids. Strain S6T harbored meso-diaminopimelic acid as the diagnostic diamino acid and an A1γ type of peptidoglycan. The major cell wall sugars of strain S6T were xylose and glucose. Phylogenetic, physiological, biochemical, and morphological analyses suggest that this strain represents a novel species of genus Domibacillus, and the name Domibacillus iocasae sp. nov. is proposed with the type species S6T (= DSM 29979T = CCTCC AB 2015183T). An emended description of the genus Domibacillus is also provided.

  16. Solar-, monsoon- and Kuroshio-influenced thermocline depth and sea surface salinity in the southern Okinawa Trough during the past 17,300 years

    NASA Astrophysics Data System (ADS)

    Wang, Libo; Li, Jun; Zhao, Jingtao; Wei, Helong; Hu, Bangqi; Dou, Yanguang; Sun, Zhilei; Zou, Liang; Bai, Fenglong

    2016-08-01

    Factors influencing millennial-scale variability in the thermocline depth (vertical mixing) and sea surface salinity (SSS) of the southern Okinawa Trough (OT) during the past 17,300 years were investigated based on foraminifer oxygen isotope records of the surface dweller Globigerinoides ruber sensu stricto and the thermocline dweller Pulleniatina obliquiloculata in the AMS 14C dated OKT-3 core. The thermocline depth is influenced by surface thermal buoyancy (heat) flux, in turn controlled by the annual mean insolation at 30°N and the strength of the East Asian winter monsoon (EAWM). Strong insolation and weak EAWM tend to increase buoyancy gain (decrease buoyancy loss), corresponding to shallow thermocline depths, and vice versa. Regional SSS is influenced by the global ice volume, the Kuroshio Current (KC), and vertical mixing. A deep thermocline coincides with a high SSS because strong vertical mixing brings more, saltier subsurface KC water to the surface, and vice versa. Local SSS (excluding the global ice volume effect) became lower in the northern OT than in the southern OT after ~9.2 ka, implying that Changjiang diluted water had stronger influence in the northern sector. SSS show no major changes during the Bølling/Allerød and Younger Dryas events, probably because the KC disturbed the North Atlantic signals. This argues against earlier interpretations of sea surface temperature records of this core. Wavelet and spectral analyses of the Δδ18OP-G (δ18O of P. obliquiloculata minus G. ruber s.s.) and δ18Olocal records display 1,540-, 1,480-, 1,050-, 860-, 640-, and 630-year periods. These are consistent with published evidence of a pervasive periodicity of 1,500 years in global climate as well as EAWM and KC signatures, and a fundamental solar periodicity of 1,000 years and intermediary derived periodicity of 700 years.

  17. Long-term trends of carbonaceous aerosol at Cape Hedo, Okinawa, Japan: based on changes in source emissions in Asian Continent

    NASA Astrophysics Data System (ADS)

    Shimada, K.; Hatakeyama, S.; Takami, A.; Shuichi, H.; Kajii, Y. J.; Kato, S.; Fushimi, A.

    2011-12-01

    Since 2004, carbonaceous aerosol were measured at Cape Hedo Atmosphere and Aerosol Monitoring Station (CHAAMS) in Okinawa, Japan, which was certified a super site by UNEP, focusing on investigating trans-boundary air pollutions or the long-term effects of aerosols on climate impact at CHAAMS using RP5400. Measurements were carried out with a time resolution of 3 hours and the observation as a whole was on a long-term basis. We found a general downward trend in the measured OC concentration at CHAAMS, with a reduction of -0.13±0.04 μgm-3 yr-1. On the other hand, EC concentration showed an increase of 16±8 ngm-3 yr-1 since 2004. The increase of EC concentration at CHAAMS is, however, not statistically significant. Firstly, to elucidate the influence of different emission source origin on downward trend of OC, we tried using OC/EC ratio. The OC/EC ratio showed a downward trend, suggesting that the reduction of biomass burning caused a downward trend in OC/EC ratio. On the other hand, the influence of emission source origin on upward trend of EC was shown to be the increasing tendency of sulphate. (year 2003~). It is suggested that increasing emission of coal combustion in the Asian continent affects upward trend on EC at CHAAMS. But, during winter and spring seasons, EC did not show an upward trend. We hypothesized that a combination of increasing fossil fuel combustion and decreasing biomass burning affects this trend. To further understand the effects of fossil fuel and biomass burning respectively, detailed data analysis will be done. Also, the ratio of EC and/or OC concentrations with CO concentrations which has been showing interesting features, will also be discussed.

  18. Associations between serum omega-3 fatty acid levels and cognitive functions among community-dwelling octogenarians in Okinawa, Japan: The KOCOA study

    PubMed Central

    Nishihira, Junko; Tokashiki, Takashi; Higashiuesato, Yasushi; Willcox, Donald Craig; Mattek, Nora; Shinto, Lynne; Ohya, Yusuke; Dodge, Hiroko H.

    2016-01-01

    Background Epidemiological studies have found frequent consumption of fatty fish is protective against cognitive decline. However, the association between circulating omega-3 polyunsaturated fatty acid (PUFA) levels and cognitive functions among the oldest old is not well known. Objective To examine the association between serum PUFA levels and cognitive function among community-dwelling, non-demented elderly aged over 80 years old. Methods The data came from the Keys to Optimal Cognitive Aging (KOCOA) study; an ongoing cohort of relatively healthy volunteers aged over 80 years old, living in Okinawa, Japan. One hundred eighty five participants (mean age 84.1 ± 3.4 years) assessed in 2011 who were free from frank dementia (defined as Clinical Dementia Rating < 1.0) were used for the current cross-sectional study. We examined whether serum omega-3 PUFAs (docosahexaenoic acid [DHA] and eicosapentaenoic acid [EPA]), arachidonic acid (AA), EPA/AA ratio, DHA/AA ratio and DHA+EPA are associated with (1) age and (2) global cognitive function (Japanese MMSE) and executive function (Verbal Fluency Letters). Data was analyzed univariately by t-test and multivariately by cumulative logistic regression models controlling for age, gender, years of education, obesity, hypertension, diabetes, and dyslipidemia. Results Serum DHA levels decreased with increasing age (p = 0.04). Higher global cognitive function was associated with higher levels of serum EPA (p = 0.03) and DHA + EPA (p = 0.03) after controlling for confounders. Conclusions Higher serum EPA and DHA + EPA levels were independently associated with better scores on global cognitive function among the oldest old, free from dementia. Longitudinal follow-up studies are warranted. PMID:26890763

  19. Post-drilling changes in seabed landscape and megabenthos in a deep-sea hydrothermal system, the Iheya North field, Okinawa Trough.

    PubMed

    Nakajima, Ryota; Yamamoto, Hiroyuki; Kawagucci, Shinsuke; Takaya, Yutaro; Nozaki, Tatsuo; Chen, Chong; Fujikura, Katsunori; Miwa, Tetsuya; Takai, Ken

    2015-01-01

    There has been an increasing interest in seafloor exploitation such as mineral mining in deep-sea hydrothermal fields, but the environmental impact of anthropogenic disturbance to the seafloor is poorly known. In this study, the effect of such anthropogenic disturbance by scientific drilling operations (IODP Expedition 331) on seabed landscape and megafaunal habitation was surveyed for over 3 years using remotely operated vehicle video observation in a deep-sea hydrothermal field, the Iheya North field, in the Okinawa Trough. We focused on observations from a particular drilling site (Site C0014) where the most dynamic change of landscape and megafaunal habitation was observed among the drilling sites of IODP Exp. 331. No visible hydrothermal fluid discharge had been observed at the sedimentary seafloor at Site C0014, where Calyptogena clam colonies were known for more than 10 years, before the drilling event. After drilling commenced, the original Calyptogena colonies were completely buried by the drilling deposits. Several months after the drilling, diffusing high-temperature hydrothermal fluid began to discharge from the sedimentary subseafloor in the area of over 20 m from the drill holes, 'artificially' creating a new hydrothermal vent habitat. Widespread microbial mats developed on the seafloor with the diffusing hydrothermal fluids and the galatheid crab Shinkaia crosnieri endemic to vents dominated the new vent community. The previously soft, sedimentary seafloor was hardened probably due to barite/gypsum mineralization or silicification, becoming rough and undulated with many fissures after the drilling operation. Although the effects of the drilling operation on seabed landscape and megafaunal composition are probably confined to an area of maximally 30 m from the drill holes, the newly established hydrothermal vent ecosystem has already lasted 2 years and is like to continue to exist until the fluid discharge ceases and thus the ecosystem in the area has

  20. Menstrual and reproductive factors in women, genetic variation in CYP17A1, and pancreatic cancer risk in the European prospective investigation into cancer and nutrition (EPIC) cohort.

    PubMed

    Duell, Eric J; Travier, Noémie; Lujan-Barroso, Leila; Dossus, Laure; Boutron-Ruault, Marie-Christine; Clavel-Chapelon, Françoise; Tumino, Rosario; Masala, Giovanna; Krogh, Vittorio; Panico, Salvatore; Ricceri, Fulvio; Redondo, Maria Luisa; Dorronsoro, Miren; Molina-Montes, Esther; Huerta, José M; Barricarte, Aurelio; Khaw, Kay-Tee; Wareham, Nick J; Allen, Naomi E; Travis, Ruth; Siersema, Peter D; Peeters, Petra H M; Trichopoulou, Antonia; Fragogeorgi, Eirini; Oikonomou, Eleni; Boeing, Heiner; Schuetze, Madlen; Canzian, Federico; Lukanova, Annekatrin; Tjønneland, Anne; Roswall, Nina; Overvad, Kim; Weiderpass, Elisabete; Gram, Inger Torhild; Lund, Eiliv; Lindkvist, Björn; Johansen, Dorthe; Ye, Weimin; Sund, Malin; Fedirko, Veronika; Jenab, Mazda; Michaud, Dominique S; Riboli, Elio; Bueno-de-Mesquita, H Bas

    2013-05-01

    Menstrual and reproductive factors and exogenous hormone use have been investigated as pancreatic cancer risk factors in case-control and cohort studies, but results have been inconsistent. We conducted a prospective examination of menstrual and reproductive factors, exogenous hormone use and pancreatic cancer risk (based on 304 cases) in 328,610 women from the EPIC cohort. Then, in a case-control study nested within the EPIC cohort, we examined 12 single nucleotide polymorphisms (SNPs) in CYP17A1 (an essential gene in sex steroid metabolism) for association with pancreatic cancer in women and men (324 cases and 353 controls). Of all factors analyzed, only younger age at menarche (<12 vs. 13 years) was moderately associated with an increased risk of pancreatic cancer in the full cohort; however, this result was marginally significant (HR = 1.44; 95% CI = 0.99-2.10). CYP17A1 rs619824 was associated with HRT use (p value = 0.037) in control women; however, none of the SNPs alone, in combination, or as haplotypes were associated with pancreatic cancer risk. In conclusion, with the possible exception of an early age of menarche, none of the menstrual and reproductive factors, and none of the 12 common genetic variants we evaluated at the CYP17A1 locus makes a substantial contribution to pancreatic cancer susceptibility in the EPIC cohort.

  1. Use of evidence based practices to improve survival without severe morbidity for very preterm infants: results from the EPICE population based cohort

    PubMed Central

    Manktelow, Bradley N; Piedvache, Aurelie; Cuttini, Marina; Boyle, Elaine; van Heijst, Arno; Gadzinowski, Janusz; Van Reempts, Patrick; Huusom, Lene; Weber, Tom; Schmidt, Stephan; Barros, Henrique; Dillalo, Dominico; Toome, Liis; Norman, Mikael; Blondel, Beatrice; Bonet, Mercedes; Draper, Elisabeth S; Maier, Rolf F

    2016-01-01

    Objectives To evaluate the implementation of four high evidence practices for the care of very preterm infants to assess their use and impact in routine clinical practice and whether they constitute a driver for reducing mortality and neonatal morbidity. Design Prospective multinational population based observational study. Setting 19 regions from 11 European countries covering 850 000 annual births participating in the EPICE (Effective Perinatal Intensive Care in Europe for very preterm births) project. Participants 7336 infants born between 24+0 and 31+6 weeks’ gestation in 2011/12 without serious congenital anomalies and surviving to neonatal admission. Main outcome measures Combined use of four evidence based practices for infants born before 28 weeks’ gestation using an “all or none” approach: delivery in a maternity unit with appropriate level of neonatal care; administration of antenatal corticosteroids; prevention of hypothermia (temperature on admission to neonatal unit ≥36°C); surfactant used within two hours of birth or early nasal continuous positive airway pressure. Infant outcomes were in-hospital mortality, severe neonatal morbidity at discharge, and a composite measure of death or severe morbidity, or both. We modelled associations using risk ratios, with propensity score weighting to account for potential confounding bias. Analyses were adjusted for clustering within delivery hospital. Results Only 58.3% (n=4275) of infants received all evidence based practices for which they were eligible. Infants with low gestational age, growth restriction, low Apgar scores, and who were born on the day of maternal admission to hospital were less likely to receive evidence based care. After adjustment, evidence based care was associated with lower in-hospital mortality (risk ratio 0.72, 95% confidence interval 0.60 to 0.87) and in-hospital mortality or severe morbidity, or both (0.82, 0.73 to 0.92), corresponding to an estimated 18% decrease

  2. Associations of anthropometric markers with serum metabolites using a targeted metabolomics approach: results of the EPIC-potsdam study

    PubMed Central

    Bachlechner, U; Floegel, A; Steffen, A; Prehn, C; Adamski, J; Pischon, T; Boeing, H

    2016-01-01

    Background/Objectives: The metabolic consequences of type of body shape need further exploration. Whereas accumulation of body mass in the abdominal area is a well-established metabolic risk factor, accumulation in the gluteofemoral area is controversially debated. We evaluated the associations of anthropometric markers of overall body mass and body shape with 127 serum metabolites within a sub-sample of the European Prospective Investigation into Cancer and Nutrition (EPIC)-Potsdam cohort. Subjects/Methods: The cross-sectional analysis was conducted in 2270 participants, randomly drawn from the EPIC-Potsdam cohort. Metabolites were measured by targeted metabolomics. To select metabolites related with both waist circumference (WC) (abdominal subcutaneous and visceral fat) and hip circumference (HC) (gluteofemoral fat, muscles and bone structure) correlations (r) with body mass index (BMI) as aggregating marker of body mass (lean and fat mass) were calculated. Relations with body shape were assessed by median metabolite concentrations across tertiles of WC and HC, mutually adjusted to each other. Results: Correlations revealed 23 metabolites related to BMI (r⩾I0.20 I). Metabolites showing relations with BMI were showing similar relations with HC adjusted WC (WCHC). In contrast, relations with WC adjusted HC (HCWC) were less concordant with relations of BMI and WCHC. In both sexes, metabolites with concordant relations regarding WCHC and HCWC included tyrosine, diacyl-phosphatidylcholine C38:3, C38:4, lyso-phosphatidylcholine C18:1, C18:2 and sphingomyelin C18:1; metabolites with opposite relations included isoleucine, diacyl-phosphatidylcholine C42:0, acyl–alkyl-phosphatidylcholine C34:3, C42:4, C42:5, C44:4 and C44:6. Metabolites specifically related to HCWC included acyl–alkyl-phosphatidylcholine C34:2, C36:2, C38:2 and C40:4, and were solely observed in men. Other metabolites were related to WCHC only. Conclusions: The study revealed specific metabolic

  3. Occurrence of bovine ephemeral fever in Okinawa Prefecture, Japan, in 2012 and development of a reverse-transcription polymerase chain reaction assay to detect bovine ephemeral fever virus gene

    PubMed Central

    NIWA, Tsuyoshi; SHIRAFUJI, Hiroaki; IKEMIYAGI, Kazufumi; NITTA, Yoshiki; SUZUKI, Moemi; KATO, Tomoko; YANASE, Tohru

    2014-01-01

    In September 2012, several cows and a calf showed decreased activity, anorexia and fever on Ishigaki Island, Okinawa Prefecture, Japan, and the cases were diagnosed as bovine ephemeral fever (BEF). We isolated BEF virus (BEFV) from one of the affected cows and then determined the complete genome sequence of the G gene, which encodes a class I transmembrane glycoprotein of BEFV. The BEFV isolate in this case, ON-3/E/12, was sorted into the same cluster as other BEFV isolates in Japan, Taiwan and China obtained in 1996−2004 and was most closely related to a 2002 Chinese isolate, JT02L, according to the phylogenetic analysis of the complete G gene. Since inactivated vaccines for BEF available in Japan are considered effective against the ON-3/E/12 isolate as well as other isolates in East Asia from 1996−2004, annual vaccination should be conducted to prevent BEF in Okinawa. Additionally, in this study, we developed an RT-PCR assay to detect the BEFV gene in Japan and neighboring countries. Our assay was able to amplify target sequences in all of the tested BEFV isolates, including 18 isolates in Japan and another isolate in Australia. The assay was found to be useful also for testing RNA samples extracted from bovine peripheral blood mononuclear cells, and the detection limit of the assay was 10 copies per tube. We believe that our assay would be an important tool for the screening of BEFV infection and the diagnosis of BEF. PMID:25648276

  4. Occurrence of bovine ephemeral fever in Okinawa Prefecture, Japan, in 2012 and development of a reverse-transcription polymerase chain reaction assay to detect bovine ephemeral fever virus gene.

    PubMed

    Niwa, Tsuyoshi; Shirafuji, Hiroaki; Ikemiyagi, Kazufumi; Nitta, Yoshiki; Suzuki, Moemi; Kato, Tomoko; Yanase, Tohru

    2015-04-01

    In September 2012, several cows and a calf showed decreased activity, anorexia and fever on Ishigaki Island, Okinawa Prefecture, Japan, and the cases were diagnosed as bovine ephemeral fever (BEF). We isolated BEF virus (BEFV) from one of the affected cows and then determined the complete genome sequence of the G gene, which encodes a class I transmembrane glycoprotein of BEFV. The BEFV isolate in this case, ON-3/E/12, was sorted into the same cluster as other BEFV isolates in Japan, Taiwan and China obtained in 1996-2004 and was most closely related to a 2002 Chinese isolate, JT02L, according to the phylogenetic analysis of the complete G gene. Since inactivated vaccines for BEF available in Japan are considered effective against the ON-3/E/12 isolate as well as other isolates in East Asia from 1996-2004, annual vaccination should be conducted to prevent BEF in Okinawa. Additionally, in this study, we developed an RT-PCR assay to detect the BEFV gene in Japan and neighboring countries. Our assay was able to amplify target sequences in all of the tested BEFV isolates, including 18 isolates in Japan and another isolate in Australia. The assay was found to be useful also for testing RNA samples extracted from bovine peripheral blood mononuclear cells, and the detection limit of the assay was 10 copies per tube. We believe that our assay would be an important tool for the screening of BEFV infection and the diagnosis of BEF.

  5. Tetrodotoxin and Its Analogues in the Pufferfish Arothron hispidus and A. nigropunctatus from the Solomon Islands: A Comparison of Their Toxin Profiles with the Same Species from Okinawa, Japan.

    PubMed

    Puilingi, Clyde Gorapava; Kudo, Yuta; Cho, Yuko; Konoki, Keiichi; Yotsu-Yamashita, Mari

    2015-08-26

    Pufferfish poisoning has not been well documented in the South Pacific, although fish and other seafood are sources of protein in these island nations. In this study, tetrodotoxin (TTX) and its analogues in each organ of the pufferfish Arothron hispidus and A. nigropunctatus collected in the Solomon Islands were investigated using high resolution LC-MS. The toxin profiles of the same two species of pufferfish from Okinawa, Japan were also examined for comparison. TTXs concentrations were higher in the skin of both species from both regions, and relatively lower in the liver, ovary, testis, stomach, intestine, and flesh. Due to higher TTX concentrations (51.0 and 28.7 µg/g at highest) detected in the skin of the two species from the Solomon Islands (saxitoxin was <0.02 µg/g), these species should be banned from consumption. Similar results were obtained from fish collected in Okinawa, Japan: TTX in the skin of A. hispidus and A. nigropunctatus were 12.7 and 255 µg/g, respectively, at highest, and saxitoxin was also detected in the skin (2.80 µg/g at highest) and ovary of A. hispidus. TTX, 5,6,11-trideoxyTTX (with its 4-epi form), and its anhydro forms were the most abundant, and 11-oxoTTX was commonly detected in the skin.

  6. Tetrodotoxin and Its Analogues in the Pufferfish Arothron hispidus and A. nigropunctatus from the Solomon Islands: A Comparison of Their Toxin Profiles with the Same Species from Okinawa, Japan

    PubMed Central

    Gorapava Puilingi, Clyde; Kudo, Yuta; Cho, Yuko; Konoki, Keiichi; Yotsu-Yamashita, Mari

    2015-01-01

    Pufferfish poisoning has not been well documented in the South Pacific, although fish and other seafood are sources of protein in these island nations. In this study, tetrodotoxin (TTX) and its analogues in each organ of the pufferfish Arothron hispidus and A. nigropunctatus collected in the Solomon Islands were investigated using high resolution LC-MS. The toxin profiles of the same two species of pufferfish from Okinawa, Japan were also examined for comparison. TTXs concentrations were higher in the skin of both species from both regions, and relatively lower in the liver, ovary, testis, stomach, intestine, and flesh. Due to higher TTX concentrations (51.0 and 28.7 µg/g at highest) detected in the skin of the two species from the Solomon Islands (saxitoxin was <0.02 µg/g), these species should be banned from consumption. Similar results were obtained from fish collected in Okinawa, Japan: TTX in the skin of A. hispidus and A. nigropunctatus were 12.7 and 255 µg/g, respectively, at highest, and saxitoxin was also detected in the skin (2.80 µg/g at highest) and ovary of A. hispidus. TTX, 5,6,11-trideoxyTTX (with its 4-epi form), and its anhydro forms were the most abundant, and 11-oxoTTX was commonly detected in the skin. PMID:26343722

  7. Hematologic responses in patients with aplastic anemia treated with deferasirox: a post hoc analysis from the EPIC study.

    PubMed

    Lee, Jong Wook; Yoon, Sung-Soo; Shen, Zhi Xiang; Ganser, Arnold; Hsu, Hui-Chi; El-Ali, Ali; Habr, Dany; Martin, Nicolas; Porter, John B

    2013-07-01

    Reports are emerging of hematologic responses associated with iron chelation therapy; however, studies are limited in aplastic anemia patients. Deferasirox reduced iron overload in aplastic anemia patients enrolled in the EPIC (Evaluation of Patients' Iron Chelation with Exjade(®)) study (n=116). A post hoc analysis of hematologic responses was conducted on 72 patients with evaluable hematologic parameters (according to UK guideline criteria), 24 of whom received deferasirox without concomitant immunosuppressive treatment. Partial hematologic responses were observed in 11 of 24 (45.8%) patients; all became transfusion-independent. One patient had an additional platelet response and one patient had an additional platelet and hemoglobin response. Mean serum ferritin levels at end of study were significantly reduced in partial hematologic responders (n=11; -3948 ± 4998 ng/mL; baseline 6693 ± 7014 ng/mL; percentage change from baseline -45.7%; P=0.0029). In non-responders, the reduction in serum ferritin was less pronounced (n=13; -2021 ± 3242 ng/mL; baseline 4365 ± 3063 ng/mL; % change from baseline -27.6%; P=0.0171). Alongside reduction in iron overload, deferasirox may, therefore, improve hematologic parameters in a subset of aplastic anemia patients. Further investigation is required to elucidate the mechanisms involved.

  8. Joint effect of unlinked genotypes: application to type 2 diabetes in the EPIC-Potsdam case-cohort study.

    PubMed

    Knüppel, Sven; Meidtner, Karina; Arregui, Maria; Holzhütter, Hermann-Georg; Boeing, Heiner

    2015-07-01

    Analyzing multiple single nucleotide polymorphisms (SNPs) is a promising approach to finding genetic effects beyond single-locus associations. We proposed the use of multilocus stepwise regression (MSR) to screen for allele combinations as a method to model joint effects, and compared the results with the often used genetic risk score (GRS), conventional stepwise selection, and the shrinkage method LASSO. In contrast to MSR, the GRS, conventional stepwise selection, and LASSO model each genotype by the risk allele doses. We reanalyzed 20 unlinked SNPs related to type 2 diabetes (T2D) in the EPIC-Potsdam case-cohort study (760 cases, 2193 noncases). No SNP-SNP interactions and no nonlinear effects were found. Two SNP combinations selected by MSR (Nagelkerke's R² = 0.050 and 0.048) included eight SNPs with mean allele combination frequency of 2%. GRS and stepwise selection selected nearly the same SNP combinations consisting of 12 and 13 SNPs (Nagelkerke's R² ranged from 0.020 to 0.029). LASSO showed similar results. The MSR method showed the best model fit measured by Nagelkerke's R² suggesting that further improvement may render this method a useful tool in genetic research. However, our comparison suggests that the GRS is a simple way to model genetic effects since it does not consider linkage, SNP-SNP interactions, and no non-linear effects.

  9. Estimating usual food intake distributions by using the multiple source method in the EPIC-Potsdam Calibration Study.

    PubMed

    Haubrock, Jennifer; Nöthlings, Ute; Volatier, Jean-Luc; Dekkers, Arnold; Ocké, Marga; Harttig, Ulrich; Illner, Anne-Kathrin; Knüppel, Sven; Andersen, Lene F; Boeing, Heiner

    2011-05-01

    Estimating usual food intake distributions from short-term quantitative measurements is critical when occasionally or rarely eaten food groups are considered. To overcome this challenge by statistical modeling, the Multiple Source Method (MSM) was developed in 2006. The MSM provides usual food intake distributions from individual short-term estimates by combining the probability and the amount of consumption with incorporation of covariates into the modeling part. Habitual consumption frequency information may be used in 2 ways: first, to distinguish true nonconsumers from occasional nonconsumers in short-term measurements and second, as a covariate in the statistical model. The MSM is therefore able to calculate estimates for occasional nonconsumers. External information on the proportion of nonconsumers of a food can also be handled by the MSM. As a proof-of-concept, we applied the MSM to a data set from the European Prospective Investigation into Cancer and Nutrition (EPIC)-Potsdam Calibration Study (2004) comprising 393 participants who completed two 24-h dietary recalls and one FFQ. Usual intake distributions were estimated for 38 food groups with a proportion of nonconsumers > 70% in the 24-h dietary recalls. The intake estimates derived by the MSM corresponded with the observed values such as the group mean. This study shows that the MSM is a useful and applicable statistical technique to estimate usual food intake distributions, if at least 2 repeated measurements per participant are available, even for food groups with a sizeable percentage of nonconsumers.

  10. JBluIce-EPICS: a fast and flexible open-source beamline control system for macromolecular crystallography

    NASA Astrophysics Data System (ADS)

    Stepanov, S.; Hilgart, M.; Makarov, O.; Pothineni, S. B.; Yoder, D.; Ogata, C.; Sanishvili, R.; Venugopalan, N.; Becker, M.; Clift, M.; Smith, J. L.; Fischetti, R. F.

    2013-03-01

    This paper overviews recent advances in the JBluIce-EPICS open-source control system designed at the macromolecular crystallography beamlines of the National Institute of General Medical Sciences and National Cancer Institute at the Advanced Photon Source (GM/CA@APS). We discuss some technical highlights of this system distinguishing it from the competition, such as reduction of software layers to only two, possibility to operate JBluIce in parallel with other beamline controls, plugin-enabled architecture where the plugins can be written in any programming language, and utilization of the whole power of the Java integrated development environment in the Graphical User Interface. Then, we demonstrate how these highlights help to make JBluIce fast, easily adaptable to new beamline developments, and intuitive for users. In particular, we discuss several recent additions to the system including a bridge between crystal rastering and data collection, automatic detection of raster polygons from optical crystal centering, background data processing, and a pathway to a fully automated pipeline from crystal screening to solving crystal structure.

  11. MLH1 promoter methylation, diet, and lifestyle factors in mismatch repair deficient colorectal cancer patients from EPIC-Norfolk.

    PubMed

    Gay, Laura J; Arends, Mark J; Mitrou, Panagiota N; Bowman, Richard; Ibrahim, Ashraf E; Happerfield, Lisa; Luben, Robert; McTaggart, Alison; Ball, Richard Y; Rodwell, Sheila A

    2011-01-01

    There is conflicting evidence for the role diet and lifestyle play in the development of mismatch repair (MMR)-deficient colorectal cancers (CRC). In this study, associations between MMR deficiency, clinicopathological characteristics, and dietary and lifestyle factors in sporadic CRC were investigated. Tumor samples from 185 individuals in the EPIC-Norfolk study were analyzed for MLH1 gene promoter methylation and microsatellite instability (MSI). Dietary and lifestyle data were collected prospectively using 7-day food diaries (7dd) and questionnaires. MMR-deficient tumor cases (MLH1 promoter methylation positive, MSI-H) were more likely to be female, older at diagnosis, early Dukes' stage (A/B), and proximal in location (MSI-H P = 0.03, 0.03, 0.02, and 0.001, respectively). Tumors with positive MLH1 promoter methylation (>20%) were associated with poor differentiation (P = 0.03). Low physical activity was associated with cases without MSI (P = 0.05). MMR deficiency was not significantly associated with cigarette smoking or alcohol, folate, fruit, vegetable, or meat consumption. We conclude that MMR-deficient tumors represent a distinct subset of sporadic CRC that are proximal in location, early Dukes' stage, and poorly differentiated, in cases that are female and older at diagnosis. There is no overall role for diet and lifestyle in MMR status in CRC, consistent with age-related susceptibility to MLH1 promoter methylation.

  12. Explosion-induced stress changes estimated from vibrating-wire stressmeter measurements near the Mighty Epic event, Nevada Test Site

    USGS Publications Warehouse

    Ellis, William L.; Kibler, J.D.

    1983-01-01

    Explosion-induced compressive stress increases near an underground nuclear explosion are believed to contribute significantly to the containment of high-pressure gases within the explosion-produced cavity. These induced compressive stresses are predicted by computer calculations, but have never been adequately confirmed by field measurements, owing primarily to the unique difficulties of obtaining such field data. Vibrating-wire stressmeter measurements made near the Mighty Epic nuclear detonation, however, qualitatively indicate that within 150 meters of the working point, permanent compressive stress increases of several megapascals were present 15 weeks after the event. Additionally, stress-change magnitudes interpreted from the stressmeter data between the 75- and 260-meter range from the working point compare favorably with calculational predictions of the stress changes believed to be present shortly after detonation of the event. The measurements and calculations differ, however, with regard to the pattern of stress change radial and transverse to the explosion source. For the range of the field measurements from the working point, computer models predict the largest compressive-stress increase to be radial to the explosion source, while the field data indicate the transverse component of. stress change to be the most compressive. The significance of time-dependent modification of the initial explosion-induced stress distribution is, however, uncertain with regard to the comparison of the field measurements and theoretical predictions.

  13. Urinary excretions of 34 dietary polyphenols and their associations with lifestyle factors in the EPIC cohort study

    PubMed Central

    Zamora-Ros, Raul; Achaintre, David; Rothwell, Joseph A.; Rinaldi, Sabina; Assi, Nada; Ferrari, Pietro; Leitzmann, Michael; Boutron-Ruault, Marie-Christine; Fagherazzi, Guy; Auffret, Aurélie; Kühn, Tilman; Katzke, Verena; Boeing, Heiner; Trichopoulou, Antonia; Naska, Androniki; Vasilopoulou, Effie; Palli, Domenico; Grioni, Sara; Mattiello, Amalia; Tumino, Rosario; Ricceri, Fulvio; Slimani, Nadia; Romieu, Isabelle; Scalbert, Augustin

    2016-01-01

    Urinary excretion of 34 dietary polyphenols and their variations according to diet and other lifestyle factors were measured by tandem mass spectrometry in 475 adult participants from the European Prospective Investigation into Cancer and Nutrition (EPIC) cross-sectional study. A single 24-hour urine sample was analysed for each subject from 4 European countries. The highest median levels were observed for phenolic acids such as 4-hydroxyphenylacetic acid (157 μmol/24 h), followed by 3-hydroxyphenylacetic, ferulic, vanillic and homovanillic acids (20–50 μmol/24 h). The lowest concentrations were observed for equol, apigenin and resveratrol (<0.1 μmol/24 h). Urinary polyphenols significantly varied by centre, followed by alcohol intake, sex, educational level, and energy intake. This variability is largely explained by geographical variations in the diet, as suggested by the high correlations (r > 0.5) observed between urinary polyphenols and the intake of their main food sources (e.g., resveratrol and gallic acid ethyl ester with red wine intake; caffeic, protocatechuic and ferulic acids with coffee consumption; and hesperetin and naringenin with citrus fruit intake). The large variations in urinary polyphenols observed are largely determined by food preferences. These polyphenol biomarkers should allow more accurate evaluation of the relationships between polyphenol exposure and the risk of chronic diseases in large epidemiological studies. PMID:27273479

  14. Lactococcus lactis anchoring avian infectious bronchitis virus multi-epitope peptide EpiC induced specific immune responses in chickens.

    PubMed

    Cao, Hai-Peng; Wang, Hong-Ning; Yang, Xin; Zhang, An-Yun; Li, Xin; Ding, Meng-Die; Liu, Si-Tong; Zhang, Zhi-Kun; Yang, Fan

    2013-01-01

    Mucosal immunity is critical in preventing infectious bronchitis virus (IBV) infection. To deliver viral antigens to the mucosal immune system of chickens safely and effectively, we constructed a Lactococcus lactis strain carrying IBV multi-epitope gene EpiC fused with the gene of the cell-wall anchoring domain of Staphylococcus aureus protein A. SDS-PAGE and Western blot results indicated that the fused peptide was located partially on the cell surface. Oral and nasal inoculation with the recombinant L. lactis of chickens elicited significantly high humoral and mucosal immune responses, especially in the nasally immunized group. Eighty percent chickens of the nasally immunized group with recombinant L. lactis did not show any clinical signs after a lethal dose challenge with IBV SAIBk strain, while all the non-recombinant L. lactis immunized chickens exhibited obvious and typical symptoms. These results indicate that needle-free recombinant lactococci anchoring the IBV antigen makes a promising vaccine candidate against the spread of IB.

  15. Water, from Gilgamesh Epic to Nobel Laureate Richard Feynman: a look into polywater and the memory of water.

    PubMed

    De Santo, Luca Salvatore; Bisaccia, Carmela; De Santo, Rosa Maria

    2009-01-01

    Water is a complex source of imagination, dreams and rituals, where cultural differences ebb and flow, where a plethora of meanings and interpretations interlink and wash over one another. Water has an ambivalent character as stated in most of the ancient cosmogonies and in the Epic of Gilgamesh. Water's composition was discovered by the London scientist Henry Cavendish in about 1781. Although it is an apparently simple molecule (H2O), it has a highly complex and anomalous character. The anomalous properties of water are those where the behavior of liquid water is quite different from what is found with other liquids. As often stated, life depends indeed on these anomalous properties of water. Notably there are 12 phase, 22 density, 12 material, 11 thermodynamic and 9 physical anomalies. A powerful look into the water molecule was given by Nobel Prize recipient Richard P. Feynman as published in Six easy pieces. A look into the most recent quest for more knowledge about water leads us to the concept of pathological science. The cases of "polywater" and "the memory of water" are indeed paradigmatic episodes of fraudulent research published in journals with high impact factors. In conclusion, men came out of water engineered to handle water, and water greatly affects mythology and philosophy and is a strong presence in the arts and science.

  16. Implementation and assessment of the mechanical-threshold-stress model using the EPIC2 and PINON computer codes

    SciTech Connect

    Maudlin, P.J.; Davidson, R.F.; Henninger, R.J.

    1990-09-01

    A flow-stress constitutive model based on dislocation mechanics has been implemented in the EPIC2 and PINON continuum mechanics modes. This model provides a better understanding of the plastic deformation process for ductile materials by using an internal state variable called the mechanical threshold stress. This kinematic quantity tracks the evolution of the material's microstructure along some arbitrary strain, strain-rate, and temperature-dependent path using a differential form that balances dislocation generation and recovery processes. Given a value for the mechanical threshold stress, the flow stress is determined using either a thermal-activation-controlled or a drag-controlled kinetics relationship. We evaluated the performance of the Mechanical Threshold Stress (MTS) model in terms of accuracy and computational resources through a series of assessment problems chosen to exercise the model over a large range of strain rates and strains. Our calculations indicate that the more complicated MTS model is reasonable in terms of computational resources when compared with other models in common hydrocode use. In terms of accuracy, these simulations show that the MTS model is superior for problems containing mostly normal strain with shear strains less than 0.2 but perhaps not as accurate for problems that contain large amounts of shear strain. 29 refs., 33 figs., 9 tabs.

  17. Aromatic adducts and lung cancer risk in the European Prospective Investigation into Cancer and Nutrition (EPIC) Spanish cohort.

    PubMed

    Gilberson, Tamra; Peluso, Marco E M; Munia, Armelle; Luján-Barroso, Leila; Sánchez, María-José; Navarro, Carmen; Amiano, Pilar; Barricarte, Aurelio; Quirós, J Ramón; Molina-Montes, Esther; Sánchez-Cantalejo, Emilio; Tormo, María-José; Chirlaque, María-Dolores; Ardanaz, Eva; Dorronsoro, Miren; Confortini, Massimo; Bonet, Catalina; Sala, Núria; González, Carlos A; Agudo, Antonio

    2014-09-01

    In this case-cohort study, we examined the association between bulky DNA adducts and the risk of lung cancer within the European Prospective Investigation into Cancer and Nutrition (EPIC) Spanish cohort with an average 7-year follow-up, including 98 cases of primary lung cancer and 296 subjects randomly selected from the cohort. Aromatic adducts were measured using (32)P-postlabeling in leukocyte DNA from blood samples collected at enrollment. The association between DNA adducts and the risk of lung cancer was estimated using a Cox proportional hazards model with a modified partial likelihood. There was an overall significant increased risk for developing lung cancer when DNA adduct concentrations were doubled, with relative risk (RR) adjusting for all relevant confounders of 1.36 with 95% confidence interval (CI) 1.18-157. There was a significant increased risk for developing lung cancer when DNA adduct concentrations were doubled for current smokers and among subjects exposed to PAH at work; there was also a slightly higher increase among males than females. However, no statistically significant differences were observed for the effect of adduct levels across smoking status, sex or occupational exposure to PAH. A meta-analysis combined four prospective studies, including this study, resulting in a significant association among current smokers, with an overall estimate of 34% increase in the risk of lung cancer when doubling the level of aromatic DNA adducts in leukocytes.

  18. The association between Mediterranean Diet Score and glucokinase regulatory protein gene variation on the markers of cardiometabolic risk: an analysis in the European Prospective Investigation into Cancer (EPIC)-Norfolk study.

    PubMed

    Sotos-Prieto, Mercedes; Luben, Robert; Khaw, Kay-Tee; Wareham, Nicholas J; Forouhi, Nita G

    2014-07-14

    Consumption of a Mediterranean diet (MD) and genetic variation in the glucokinase regulatory protein (GCKR) gene have been reported to be associated with TAG and glucose metabolism. It is uncertain whether there is any interaction between these factors. Therefore, the aims of the present study were to test the association of adherence to a MD and rs780094 (G>A) SNP in the GCKR gene with the markers of cardiometabolic risk, and to investigate the interaction between genetic variation and MD adherence. We studied 20 986 individuals from the European Prospective Investigation into Cancer (EPIC)-Norfolk study. The relative Mediterranean Diet Score (rMED: range 0-18) was used to assess MD adherence. Linear regression was used to estimate the association between the rMED, genotype and cardiometabolic continuous traits, adjusting for potential confounders. In adjusted analyses, we observed independent associations of MD adherence and genotype with cardiometabolic risk, with the highest risk group (AA genotype; lowest rMED) having higher concentrations of TAG, total cholesterol and apoB (12·5, 2·3 and 3·1%, respectively) v. those at the lowest risk (GG genotype; highest rMED). However, the associations of MD adherence with metabolic markers did not differ by genotype, with no significant gene-diet interactions for lipids or for glycated Hb. In conclusion, we found independent associations of the rMED and of the GCKR genotype with cardiometabolic profile, but found no evidence of interaction between them.

  19. Extrasolar Planet Inferometric Survey (EPIcS)

    NASA Technical Reports Server (NTRS)

    Shao, Michael; Baliunas, Sallie; Boden, Andrew; Kulkarni, Shrinivas; Lin, Douglas N. C.; Loredo, Tom; Queloz, Didier; Shaklan, Stuart; Tremaine, Scott; Wolszczan, Alexander

    2004-01-01

    The discovery of the nature of the solar system was a crowning achievement of Renaissance science. The quest to evaluate the properties of extrasolar planetary systems is central to both the intellectual understanding of our origins and the cultural understanding of humanity's place in the Universe; thus it is appropriate that the goals and objectives of NASA's breakthrough Origins program emphasize the study of planetary systems, with a focus on the search for habitable planets. We propose an ambitious research program that will use SIM - the first major mission of the Origins program - to explore planetary systems in our Galactic neighborhood. Our program is a novel two-tiered SIM survey of nearby stars that exploits the capabilities of SIM to achieve two scientific objectives: (i) to identify Earth-like planets in habitable regions around nearby Sunlike stars: and (ii) to explore the nature and evolution of planetary systems in their full variety. The first of these objectives was recently recommended by the Astronomy and Astrophysics Survey Committee (the McKee-Taylor Committee) as a prerequisite for the development of the Terrestrial Planet Finder mission later in the decade. Our program combines this two-part survey with preparatory and contemporaneous research designed to maximize the scientific return from the limited and thus precious observing resources of SIM.

  20. Post-drilling hydrothermal vent and associated biological activities seen through artificial hydrothermal vents in the Iheya North field, Okinawa Trough

    NASA Astrophysics Data System (ADS)

    Takai, K.; Kawagucci, S.; Miyazaki, J.; Watsuji, T.; Ishibashi, J.; Yamamoto, H.; Nozaki, T.; Kashiwabara, T.; Shibuya, T.

    2012-12-01

    In 2010, IODP Expedition 331 was conducted in the Iheya North Field, the Okinawa Trough and drilled several sites in hydrothermally active subseafloor. In addition, during the IODP Expedition 331, four new hydrothermal vents were created. These post-drilling artificial hydrothermal vents provide excellent opportunities to investigate the physical, chemical and microbiological characteristics of the previously unexplored subseafloor hydrothermal fluid reservoirs, and to monitor and estimate how the anthropogenic drilling behaviors affect the deep-sea hydrothermal vent ecosystem. We were very much interested in the difference of hydrothermal fluid chemistry between the natural hydrothermal vents and the artificial hydrothermal vents. The IODP porewater chemistry of the cores pointed to the density-driven stratification of the phase-separated hydrothermal fluids and the natural vent fluids were likely derived only from the shallower vapor-enriched phases. However, the artificial hydrothermal vents had deeper fluid sources in the subseafloor hydrothermal fluid reservoirs composed of vapor-lost (Cl-enriched) phases. The fluids from the artificial hydrothermal vents were sampled by ROV at 5, 12 and 18 months after the IODP expedition. The artificial hydrothermal vent fluids were slightly enriched with Cl as compared to the natural hydrothermal vent fluids. Thus, the artificial hydrothermal vents successfully entrained the previously unexplored subseafloor hydrothermal fluids. The newly created hydrothermal vents also hosted the very quickly grown, enormous chimney structures, of which mineral compositions were highly variable among the vents. However, the quickly grown C0016B and C0016D vent chimneys were found to be typical Kuroko ore even though the chimney growth rates in the artificial vents were extremely faster than those in the natural vents. In addition, the IODP drilling operation not only created new hydrothermal vents by deep drilling but also induced the

  1. Analyses of the long-range transport of nitrogeneous species through the atmosphere from the Asian continent using observational data at Cape Hedo, Okinawa, and CMAQ postanalyses

    NASA Astrophysics Data System (ADS)

    Sadanaga, Y.; Bandow, H.; Uno, I.; Sera, T.; Yuba, A.; Takenaka, N.; Takami, A.; Kurokawa, J.; Hatakeyama, S.

    2010-12-01

    The long-term monitoring of air quality has been continuing at the Cape Hedo Atmosphere and Aerosol Monitoring Station (CHAAMS) in Okinawa, Japan in terms of assessing the environmental impact and biogeochemical effect to the marine-surface activities by the economic growth of Asian continent. Among the monitoring data, total odd nitrogen oxides (NOy), HNO3, particulate nitrate (NO3-(p)), NH3, NH4+ and SO42- were analyzed for the period from 16 March to 13 April 2008 as well as the postanalyses of those species by the Community Muti-scale Air Quality model (CMAQ) of those species. NOy and total nitrate (TN = HNO3 + NO3-(p)) concentrations from China (CH) air mass origin were high during the observational period in both observed and model-calculated result. The long-range transport of odd nitrogen species from the Asian continent is supported with respect to both the CMAQ postanalyses and the observations. HNO3 and NO3-(p) concentrations from CH air mass origin were also high during the observational period. However, the HNO3 diurnal variation with daytime peak and nighttime lows suggests that HNO3 around the CHAAMS forms photochemically in situ or in areas relatively close to the CHAAMS. The maximum and minimum concentrations of NH3 were observed at Pacific Ocean (PO) and Middle China air mass origins, respectively, and the observed NH3 concentrations from PO air mass origin were highest. NH3 concentration calculated by the CMAQ failed to reproduce observed variation, this is because the horizontal resolution of CMAQ (-20km) is not sufficient to allocate the land surface/vegetation base NH3 emission. NH4+ and SO42- concentrations from CH air mass origin were high during the observational period for both the observation and the CMAQ calculation. As well as the case of NOy and TN, the long-range transport of ammonium and sulfur compounds from the Asian continent is also supported in terms of both the CMAQ postanalyses and the observations.

  2. Modeling soil carbon sequestration with EPIC and the soil conditioning index

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Increasing CO2 in the atmosphere is a concern, because of its potential to warm the planet. CO2 and other greenhouse gases act as a barrier to prevent heat escaping from the atmosphere. Prior to the industrial revolution, atmospheric CO2 concentration was about 280 parts per million (ppm). A deli...

  3. Efficient Photometry In-Frame Calibration (EPIC) Gaussian Corrections for Automated Background Normalization of Rate-Tracked Satellite Imagery

    NASA Astrophysics Data System (ADS)

    Griesbach, J.; Wetterer, C.; Sydney, P.; Gerber, J.

    Photometric processing of non-resolved Electro-Optical (EO) images has commonly required the use of dark and flat calibration frames that are obtained to correct for charge coupled device (CCD) dark (thermal) noise and CCD quantum efficiency/optical path vignetting effects respectively. It is necessary to account/calibrate for these effects so that the brightness of objects of interest (e.g. stars or resident space objects (RSOs)) may be measured in a consistent manner across the CCD field of view. Detected objects typically require further calibration using aperture photometry to compensate for sky background (shot noise). For this, annuluses are measured around each detected object whose contained pixels are used to estimate an average background level that is subtracted from the detected pixel measurements. In a new photometric calibration software tool developed for AFRL/RD, called Efficient Photometry In-Frame Calibration (EPIC), an automated background normalization technique is proposed that eliminates the requirement to capture dark and flat calibration images. The proposed technique simultaneously corrects for dark noise, shot noise, and CCD quantum efficiency/optical path vignetting effects. With this, a constant detection threshold may be applied for constant false alarm rate (CFAR) object detection without the need for aperture photometry corrections. The detected pixels may be simply summed (without further correction) for an accurate instrumental magnitude estimate. The noise distribution associated with each pixel is assumed to be sampled from a Poisson distribution. Since Poisson distributed data closely resembles Gaussian data for parameterized means greater than 10, the data may be corrected by applying bias subtraction and standard-deviation division. EPIC performs automated background normalization on rate-tracked satellite images using the following technique. A deck of approximately 50-100 images is combined by performing an independent median

  4. Interleukin-6 g.-174G>C promoter polymorphism is associated with obesity in the EPIC-Potsdam Study.

    PubMed

    Klipstein-Grobusch, Kerstin; Möhlig, Matthias; Spranger, Joachim; Hoffmann, Kurt; Rodrigues, Fabio U S; Sharma, Arya M; Klaus, Susanne; Pfeiffer, Andreas F H; Boeing, Heiner

    2006-01-01

    Homozygosity for the interleukin-6 (IL-6) g.-174G>C promoter polymorphism has recently been associated with indices of overweight. Homozygous subjects were observed to have reduced energy expenditure, suggesting that lower IL-6 gene transcription, caused by the IL-6 g.-174G>C promoter polymorphism, may be associated with obesity. The aim of this study was to investigate the association of this polymorphism with long-term weight gain. For 334 normal weight (20 < BMI < or = 25 kg/m2) and 334 obese (BMI > 30 kg/m2) subjects matched by age and sex originating from the population-based EPIC-Potsdam Study, recalled weight change from age 25 to study enrollment was determined, the IL-6 g.-174G>C promoter polymorphism was defined, and plasma concentrations of IL-6 and C-reactive protein were measured. The IL-6 g.-174G>C promoter polymorphism was significantly associated with obesity (chi2 = 7,34, p = 0.026). Odds ratios for subjects with GC and CC genotypes for obesity were 1.19 (95% CI: 0.84 to 1.68; p = 0.323) and 1.91 (95% CI: 1.19 to 3.08; p = 0.007), respectively. Recalled weight change from age 25 years to study enrollment differed significantly according to genotype (p = 0.044) and was most pronounced in subjects with the CC genotype, suggesting that the IL-6 g.-174G>C promoter polymorphism is a susceptibility or modifying locus for common obesity and weight gain.

  5. Association of Sleep Duration with Chronic Diseases in the European Prospective Investigation into Cancer and Nutrition (EPIC)-Potsdam Study

    PubMed Central

    von Ruesten, Anne; Weikert, Cornelia; Fietze, Ingo; Boeing, Heiner

    2012-01-01

    Background In view of the reduced number of hours devoted to sleep in modern western societies the question arises what effects might result from sleep duration on occurrence of chronic diseases. Methods Data from 23 620 middle-aged participants of the European Prospective Investigation into Cancer and Nutrition (EPIC)-Potsdam study, that were recruited between 1994–1998, were analyzed by using Cox proportional hazard regression to examine the association between self-reported sleep duration at baseline and incidence of chronic diseases, such as diabetes, myocardial infarction, stroke, and cancer. Results During a mean follow-up period of 7.8 years 841 incident cases of type 2 diabetes, 197 cases of myocardial infarction, 169 incident strokes, and 846 tumor cases were observed. Compared to persons sleeping 7-<8 h/day, participants with sleep duration of <6 h had a significantly increased risk of stroke (Hazard Ratio (HR) = 2.06, 95% confidence interval (CI): 1.18–3.59), cancer (HR = 1.43, 95% CI: 1.09–1.87), and overall chronic diseases (HR = 1.31, 95% CI: 1.10–1.55) in multivariable adjusted models. Self-reported daytime sleep at baseline was not associated with incident chronic diseases in the overall study sample. However, there had been an effect modification of daytime sleep by hypertension showing that daytime sleep was inversely related to chronic disease risk among non-hypertensive participants but directly related to chronic diseases among hypertensives. Conclusion Sleep duration of less than 6 h is a risky behavior for the development of chronic diseases, particularly stroke and cancer, and should be therefore addressed in public health campaigns. PMID:22295122

  6. Consumption of fish and meats and risk of hepatocellular carcinoma: the European Prospective Investigation into Cancer and Nutrition (EPIC)

    PubMed Central

    Fedirko, V.; Trichopolou, A.; Bamia, C.; Duarte-Salles, T.; Trepo, E.; Aleksandrova, K.; Nöthlings, U.; Lukanova, A.; Lagiou, P.; Boffetta, P.; Trichopoulos, D.; Katzke, V. A.; Overvad, K.; Tjønneland, A.; Hansen, L.; Boutron-Ruault, M. C.; Fagherazzi, G.; Bastide, N.; Panico, S.; Grioni, S.; Vineis, P.; Palli, D.; Tumino, R.; Bueno-de-Mesquita, H. B.; Peeters, P. H.; Skeie, G.; Engeset, D.; Parr, C. L.; Jakszyn, P.; Sánchez, M. J.; Barricarte, A.; Amiano, P.; Chirlaque, M.; Quirós, J. R.; Sund, M.; Werner, M.; Sonestedt, E.; Ericson, U.; Key, T. J.; Khaw, K. T.; Ferrari, P.; Romieu, I.; Riboli, E.; Jenab, M.

    2013-01-01

    Background While higher intake of fish and lower consumption of red/processed meats have been suggested to play a protective role in the etiology of several cancers, prospective evidence for hepatocellular carcinoma (HCC) is limited, particularly in Western European populations. Methods The associations of fish and meats with HCC risk were analyzed in the EPIC cohort. Between 1992 and 2010, 191 incident HCC were identified among 477 206 participants. Baseline diet was assessed using validated dietary questionnaires. A single 24-h diet recall from a cohort subsample was used for calibration. Multivariable proportional hazard regression was utilized to estimate hazard ratios (HR) and 95% confidence intervals (CI). In a nested case–control subset (HCC = 122), HBV/HCV status and liver function biomarkers were measured. Results HCC risk was inversely associated with intake of total fish (per 20 g/day increase, HR = 0.83, 95% CI 0.74–0.95 and HR = 0.80, 95% CI 0.69–0.97 before and after calibration, respectively). This inverse association was also suggested after adjusting for HBV/HCV status and liver function score (per 20-g/day increase, RR = 0.86, 95% CI 0.66–1.11 and RR = 0.74, 95% CI 0.50–1.09, respectively) in a nested case–control subset. Intakes of total meats or subgroups of red/processed meats, and poultry were not associated with HCC risk. Conclusions In this large European cohort, total fish intake is associated with lower HCC risk. PMID:23670094

  7. Dietary glycemic index and glycemic load and risk of colorectal cancer: results from the EPIC-Italy study.

    PubMed

    Sieri, S; Krogh, V; Agnoli, C; Ricceri, F; Palli, D; Masala, G; Panico, S; Mattiello, A; Tumino, R; Giurdanella, M C; Brighenti, F; Scazzina, F; Vineis, P; Sacerdote, C

    2015-06-15

    A carbohydrate-rich diet, resulting in high blood glucose and insulin, has been hypothesized as involved in colorectal cancer etiology. We investigated dietary glycemic index (GI) and glycemic load (GL), in relation to colorectal cancer, in the prospectively recruited EPIC-Italy cohort. After a median 11.7 years, 421 colorectal cancers were diagnosed among 47,749 recruited adults. GI and GL were estimated from validated food frequency questionnaires. Multivariable Cox modeling estimated hazard ratios (HRs) for associations between colorectal cancer and intakes of total, high GI and low GI carbohydrate and GI and GL. The adjusted HR of colorectal cancer for highest versus lowest GI quartile was 1.35; 95% confidence interval (CI) 1.03-1.78; p trend 0.031. Increasing high GI carbohydrate intake was also significantly associated with increasing colorectal cancer risk (HR 1.45; 95% CI 1.04-2.03; p trend 0.034), whereas increasing low GI carbohydrate was associated with reducing risk (HR 0.73; 95% CI 0.54-0.98; p trend 0.033). High dietary GI and high GI carbohydrate were associated with increased risks of cancer at all colon sites (HR 1.37; 95% CI 1.00-1.88, HR 1.80; 95% CI 1.22-2.65, respectively), whereas high GI carbohydrate and high GL were associated with increased risk of proximal colon cancer (HR 1.94; 95% CI 1.18-3.16, HR 2.01; 95% CI 1.08-3.74, respectively). After stratification for waist-to-hip ratio (WHR), cancer was significantly associated with GI, and high GI carbohydrate, in those with high WHR. These findings suggest that high dietary GI and high carbohydrate intake from high GI foods are associated with increased risk of colorectal cancer.

  8. Prospective seroepidemiologic study on the role of Human Papillomavirus and other infections in cervical carcinogenesis: evidence from the EPIC cohort.

    PubMed

    Castellsagué, Xavier; Pawlita, Michael; Roura, Esther; Margall, Núria; Waterboer, Tim; Bosch, F Xavier; de Sanjosé, Silvia; Gonzalez, Carlos Alberto; Dillner, Joakim; Gram, Inger T; Tjønneland, Anne; Munk, Christian; Pala, Valeria; Palli, Domenico; Khaw, Kay-Tee; Barnabas, Ruanne V; Overvad, Kim; Clavel-Chapelon, Françoise; Boutron-Ruault, Marie-Christine; Fagherazzi, Guy; Kaaks, Rudolf; Lukanova, Annekatrin; Steffen, Annika; Trichopoulou, Antonia; Trichopoulos, Dimitrios; Klinaki, Eleni; Tumino, Rosario; Sacerdote, Carlotta; Mattiello, Amalia; Bueno-de-Mesquita, H B As; Peeters, Petra H; Lund, Eiliv; Weiderpass, Elisabete; Quirós, J Ramón; Sánchez, María-José; Navarro, Carmen; Barricarte, Aurelio; Larrañaga, Nerea; Ekström, Johanna; Hortlund, Maria; Lindquist, David; Wareham, Nick; Travis, Ruth C; Rinaldi, Sabina; Tommasino, Massimo; Franceschi, Silvia; Riboli, Elio

    2014-07-15

    To evaluate prospectively the association between serological markers of selected infections, including HPV, and risk of developing cervical cancer (CC) and precancer, we performed a nested case-control study within the European Prospective Investigation into Cancer and Nutrition (EPIC) study that included 184 cases of invasive CC (ICC), 425 cases of cervical intraepithelial neoplasia (CIN) grade 3 or carcinoma in situ (CIS), and 1,218 matched control women. At enrollment participants completed lifestyle questionnaires and provided sera. Subjects were followed-up for a median of 9 years. Immunoassays were used to detect serum antibodies to Human Herpes Virus 2 (HHV-2), Chlamydia trachomatis (CT), Chlamydia pneumoniae, L1 proteins of mucosal and cutaneous HPV types, E6/E7 proteins of HPV16/18, as well as to four polyomaviruses. Adjusted odds ratios (OR) [and 95% confidence intervals (CI)] for CIN3/CIS and ICC risk were respectively: 1.6 (1.2-2.0) and 1.8 (1.1-2.7) for L1 seropositivity to any mucosal HPV type, 1.0 (0.4-2.4) and 7.4 (2.8-19.7) for E6 seropositivity to HPV16/18, 1.3 (0.9-1.9) and 2.3 (1.3-4.1) for CT seropositivity, and 1.4 (1.0-2.0) and 1.5 (0.9-2.6) for HHV-2 seropositivity. The highest OR for ICC was observed for HPV16 E6 seropositivity [OR = 10.2 (3.3-31.1)]. Increasing number of sexually transmitted infections (STIs) was associated with increasing risk. Non-STIs were not associated with CC risk. In conclusion, this large prospective study confirms the important role of HPV and a possible contribution of CT and HHV-2 in cervical carcinogenesis. It further identifies HPV16 E6 seropositivity as the strongest marker to predict ICC well before disease development.

  9. Smoking as a major risk factor for cervical cancer and pre-cancer: results from the EPIC cohort.

    PubMed

    Roura, Esther; Castellsagué, Xavier; Pawlita, Michael; Travier, Noémie; Waterboer, Tim; Margall, Núria; Bosch, F Xavier; de Sanjosé, Silvia; Dillner, Joakim; Gram, Inger T; Tjønneland, Anne; Munk, Christian; Pala, Valeria; Palli, Domenico; Khaw, Kay-Tee; Barnabas, Ruanne V; Overvad, Kim; Clavel-Chapelon, Françoise; Boutron-Ruault, Marie-Christine; Fagherazzi, Guy; Kaaks, Rudolf; Lukanova, Annekatrin; Steffen, Annika; Trichopoulou, Antonia; Trichopoulos, Dimitrios; Klinaki, Eleni; Tumino, Rosario; Sacerdote, Carlotta; Panico, Salvatore; Bueno-de-Mesquita, H B As; Peeters, Petra H; Lund, Eiliv; Weiderpass, Elisabete; Redondo, M Luisa; Sánchez, María-José; Tormo, Maria-José; Barricarte, Aurelio; Larrañaga, Nerea; Ekström, Johanna; Hortlund, Maria; Lindquist, David; Wareham, Nick; Travis, Ruth C; Rinaldi, Sabina; Tommasino, Massimo; Franceschi, Silvia; Riboli, Elio

    2014-07-15

    A total of 308,036 women were selected from the European Prospective Investigation into Cancer and Nutrition (EPIC) study to evaluate the association between tobacco smoking and the risk of cervical intraepithelial neoplasia of grade 3 (CIN3)/carcinoma in situ (CIS) and invasive cervical cancer (ICC). At baseline, participants completed a questionnaire and provided blood samples. During a mean follow-up time of 9 years, 261 ICC cases and 804 CIN3/CIS cases were reported. In a nested case-control study, the baseline sera from 609 cases and 1,218 matched controls were tested for L1 antibodies against HPV types 11, 16, 18, 31, 33, 35, 45, 52, 58, and antibodies against Chlamydia trachomatis (CT), and Human Herpes Virus 2 (HHV-2). Cervical samples were not available for HPV-DNA analysis in this study. Multivariate analyses were used to estimate associations between smoking and risk of CIN3/CIS and ICC in the cohort and the case-control studies. In the cohort analyses smoking status, duration and intensity showed a two-fold increased risk of CIN3/CIS and ICC, while time since quitting was associated with a two-fold reduced risk. In the nested case-control study, consistent associations were observed after adjustment for HPV, CT and HHV-2 serostatus, in both HPV seronegative and seropositive women. Results from this large prospective study confirm the role of tobacco smoking as an important risk factor for both CIN3/CIS and ICC, even after taking into account HPV exposure as determined by HPV serology. The strong beneficial effect of quitting smoking is an important finding that will further support public health policies for smoking cessation.

  10. Calibration-induced uncertainty of the EPIC model to estimate climate change impact on global maize yield

    NASA Astrophysics Data System (ADS)

    Xiong, Wei; Skalský, Rastislav; Porter, Cheryl H.; Balkovič, Juraj; Jones, James W.; Yang, Di

    2016-09-01

    Understanding the interactions between agricultural production and climate is necessary for sound decision-making in climate policy. Gridded and high-resolution crop simulation has emerged as a useful tool for building this understanding. Large uncertainty exists in this utilization, obstructing its capacity as a tool to devise adaptation strategies. Increasing focus has been given to sources of uncertainties for climate scenarios, input-data, and model, but uncertainties due to model parameter or calibration are still unknown. Here, we use publicly available geographical data sets as input to the Environmental Policy Integrated Climate model (EPIC) for simulating global-gridded maize yield. Impacts of climate change are assessed up to the year 2099 under a climate scenario generated by HadEM2-ES under RCP 8.5. We apply five strategies by shifting one specific parameter in each simulation to calibrate the model and understand the effects of calibration. Regionalizing crop phenology or harvest index appears effective to calibrate the model for the globe, but using various values of phenology generates pronounced difference in estimated climate impact. However, projected impacts of climate change on global maize production are consistently negative regardless of the parameter being adjusted. Different values of model parameter result in a modest uncertainty at global level, with difference of the global yield change less than 30% by the 2080s. The uncertainty subjects to decrease if applying model calibration or input data quality control. Calibration has a larger effect at local scales, implying the possible types and locations for adaptation.

  11. Lipoprotein (a) and risk of coronary, cerebrovascular and peripheral artery disease; the EPIC-Norfolk prospective population study

    PubMed Central

    Gurdasani, Deepti; Sjouke, Barbara; Tsimikas, Sotirios; Hovingh, G. Kees; Luben, Robert N.; Wainwright, Nicholas W. J.; Pomilla, Cristina; Wareham, Nicholas J.; Khaw, Kay-Tee; Boekholdt, S. Matthijs; Sandhu, Manjinder S.

    2014-01-01

    Objective While the association between circulating levels of lipoprotein(a) (Lp(a)) and risk of coronary artery disease (CAD) and stroke is well established, its role in risk of peripheral artery disease (PAD) remains unclear. Here, we examine the association between Lp(a) levels and PAD in a large prospective cohort. To contextualise these findings, we also examined the association between Lp(a) levels and risk of stroke and CAD and studied the role of LDL as an effect modifier of Lp(a) associated cardiovascular risk. Methods and Results Lp(a) levels were measured in apparently healthy participants in the EPIC-Norfolk cohort. Cox regression was used to quantify the association between Lp(a) levels and risk of PAD, stroke and CAD outcomes. During 212,981 person-years at risk, a total of 2365 CAD, 284 ischemic stroke and 596 PAD events occurred in 18,720 participants. Lp(a) was associated with PAD and CAD outcomes but not with ischemic stroke (HR per 2.7 fold increase in Lp(a) of 1.37, 95% CI 1.25-1.50, 1.13, 95% CI 1.04-1.22 and 0.91, 95%CI 0.79-1.03 respectively). LDL-C levels did not modify these associations. Conclusion Lp(a) levels were associated with future PAD and CAD events. The association between Lp(a) and cardiovascular disease was not modified by LDL-C levels. PMID:23065826

  12. Hemochromatosis (HFE) gene mutations and risk of gastric cancer in the European Prospective Investigation into Cancer and Nutrition (EPIC) study.

    PubMed

    Agudo, Antonio; Bonet, Catalina; Sala, Núria; Muñoz, Xavier; Aranda, Núria; Fonseca-Nunes, Ana; Clavel-Chapelon, Françoise; Boutron-Ruault, Marie Christine; Vineis, Paolo; Panico, Salvatore; Palli, Domenico; Tumino, Rosario; Grioni, Sara; Quirós, J Ramón; Molina, Esther; Navarro, Carmen; Barricarte, Aurelio; Chamosa, Saioa; Allen, Naomi E; Khaw, Kay-Tee; Bueno-de-Mesquita, H Bas; Siersema, Peter D; Numans, Mattijs E; Trichopoulou, Antonia; Lagiou, Pagona; Trichopoulos, Dimitrios; Kaaks, Rudof; Canzian, Federico; Boeing, Heiner; Meidtner, Karina; Johansson, Mattias; Sund, Malin; Manjer, Jonas; Overvad, Kim; Tjonneland, Anne; Lund, Eiliv; Weiderpass, Elisabete; Jenab, Mazda; Fedirko, Veronika; Offerhaus, G Johan A; Riboli, Elio; González, Carlos A; Jakszyn, Paula

    2013-06-01

    Hereditary hemochromatosis (HH) is a strong risk factor for hepatocellular cancer, and mutations in the HFE gene associated with HH and iron overload may be related to other tumors, but no studies have been reported for gastric cancer (GC). A nested case-control study was conducted within the European Prospective Investigation into Cancer and Nutrition (EPIC), including 365 incident gastric adenocarcinoma and 1284 controls matched by center, sex, age and date of blood collection. Genotype analysis was performed for two functional polymorphisms (C282Y/rs1800562 and H63D/rs1799945) and seven tagSNPs of the HFE genomic region. Association with all gastric adenocarcinoma, and according to anatomical localization and histological subtype, was assessed by means of the odds ratio (OR) and 95% confidence interval (CI) estimated by unconditional logistic regression adjusted for the matching variables. We observed a significant association for H63D with OR (per rare allele) of 1.32 (CI = 1.03-1.69). In subgroup analyses, the association was stronger for non-cardia anatomical subsite (OR = 1.60, CI = 1.16-2.21) and intestinal histological subtype (OR = 1.82, CI = 1.27-2.62). Among intestinal cases, two tagSNPs (rs1572982 and rs6918586) also showed a significant association that disappeared after adjustment for H63D. No association with tumors located in the cardia or with diffuse subtype was found for any of the nine SNPs analyzed. Our results suggest that H63D variant in HFE gene seems to be associated with GC risk of the non-cardia region and intestinal type, possibly due to its association with iron overload although a role for other mechanisms cannot be entirely ruled out.

  13. Plasma Elaidic Acid Level as Biomarker of Industrial Trans Fatty Acids and Risk of Weight Change: Report from the EPIC Study

    PubMed Central

    Chajès, Véronique; Biessy, Carine; Ferrari, Pietro; Romieu, Isabelle; Freisling, Heinz; Huybrechts, Inge; Scalbert, Augustin; Bueno de Mesquita, Bas; Romaguera, Dora; Gunter, Marc J.; Vineis, Paolo; Hansen, Camilla Plambeck; Jakobsen, Marianne Uhre; Clavel-Chapelon, Françoise; Fagherazzi, Guy; Boutron-Ruault, Marie-Christine; Katzke, Verana; Neamat-Allah, Jasmine; Boeing, Heiner; Bachlechner, Ursula; Trichopoulou, Antonia; Naska, Androniki; Orfanos, Philippos; Pala, Valeria; Masala, Giovanna; Mattiello, Amalia; Skeie, Guri; Weiderpass, Elisabete; Agudo, Antonio; Huerta, Jose Maria; Ardanaz, Eva; Sánchez, Maria Jose; Dorronsoro, Miren; Quirós, Jose Ramon; Johansson, Ingegerd; Winkvist, Anna; Sonested, Emily; Key, Tim; Khaw, Kay-Tee; Wareham, Nicolas J.; Peeters, Petra H.M.; Slimani, Nadia

    2015-01-01

    Background Few epidemiological studies have examined the association between dietary trans fatty acids and weight gain, and the evidence remains inconsistent. The main objective of the study was to investigate the prospective association between biomarker of industrial trans fatty acids and change in weight within the large study European Prospective Investigation into Cancer and Nutrition (EPIC) cohort. Methods Baseline plasma fatty acid concentrations were determined in a representative EPIC sample from the 23 participating EPIC centers. A total of 1,945 individuals were followed for a median of 4.9 years to monitor weight change. The association between elaidic acid level and percent change of weight was investigated using a multinomial logistic regression model, adjusted by length of follow-up, age, energy, alcohol, smoking status, physical activity, and region. Results In women, doubling elaidic acid was associated with a decreased risk of weight loss (odds ratio (OR) = 0.69, 95% confidence interval (CI) = 0.55-0.88, p = 0.002) and a trend was observed with an increased risk of weight gain during the 5-year follow-up (OR = 1.23, 95% CI = 0.97-1.56, p = 0.082) (p-trend<.0001). In men, a trend was observed for doubling elaidic acid level and risk of weight loss (OR = 0.82, 95% CI = 0.66-1.01, p = 0.062) while no significant association was found with risk of weight gain during the 5-year follow-up (OR = 1.08, 95% CI = 0.88-1.33, p = 0.454). No association was found for saturated and cis-monounsaturated fatty acids. Conclusions These data suggest that a high intake of industrial trans fatty acids may decrease the risk of weight loss, particularly in women. Prevention of obesity should consider limiting the consumption of highly processed foods, the main source of industrially-produced trans fatty acids. PMID:25675445

  14. Investigation of dietary factors and endometrial cancer risk using a nutrient-wide association study approach in the EPIC and Nurses' Health Study (NHS) and NHSII.

    PubMed

    Merritt, Melissa A; Tzoulaki, Ioanna; Tworoger, Shelley S; De Vivo, Immaculata; Hankinson, Susan E; Fernandes, Judy; Tsilidis, Konstantinos K; Weiderpass, Elisabete; Tjønneland, Anne; Petersen, Kristina E N; Dahm, Christina C; Overvad, Kim; Dossus, Laure; Boutron-Ruault, Marie-Christine; Fagherazzi, Guy; Fortner, Renée T; Kaaks, Rudolf; Aleksandrova, Krasimira; Boeing, Heiner; Trichopoulou, Antonia; Bamia, Christina; Trichopoulos, Dimitrios; Palli, Domenico; Grioni, Sara; Tumino, Rosario; Sacerdote, Carlotta; Mattiello, Amalia; Bueno-de-Mesquita, H Bas; Onland-Moret, N Charlotte; Peeters, Petra H; Gram, Inger T; Skeie, Guri; Quirós, J Ramón; Duell, Eric J; Sánchez, María-José; Salmerón, D; Barricarte, Aurelio; Chamosa, Saioa; Ericson, Ulrica; Sonestedt, Emily; Nilsson, Lena Maria; Idahl, Annika; Khaw, Kay-Tee; Wareham, Nicholas; Travis, Ruth C; Rinaldi, Sabina; Romieu, Isabelle; Patel, Chirag J; Riboli, Elio; Gunter, Marc J

    2015-02-01

    Data on the role of dietary factors in endometrial cancer development are limited and inconsistent. We applied a "nutrient-wide association study" approach to systematically evaluate dietary risk associations for endometrial cancer while controlling for multiple hypothesis tests using the false discovery rate (FDR) and validating the results in an independent cohort. We evaluated endometrial cancer risk associations for dietary intake of 84 foods and nutrients based on dietary questionnaires in three prospective studies, the European Prospective Investigation into Cancer and Nutrition (EPIC; N = 1,303 cases) followed by validation of nine foods/nutrients (FDR ≤ 0.10) in the Nurses' Health Studies (NHS/NHSII; N = 1,531 cases). Cox regression models were used to estimate HRs and 95% confidence intervals (CI). In multivariate adjusted comparisons of the extreme categories of intake at baseline, coffee was inversely associated with endometrial cancer risk (EPIC, median intake 750 g/day vs. 8.6; HR, 0.81; 95% CI, 0.68-0.97, Ptrend = 0.09; NHS/NHSII, median intake 1067 g/day vs. none; HR, 0.82; 95% CI, 0.70-0.96, Ptrend = 0.04). Eight other dietary factors that were associated with endometrial cancer risk in the EPIC study (total fat, monounsaturated fat, carbohydrates, phosphorus, butter, yogurt, cheese, and potatoes) were not confirmed in the NHS/NHSII. Our findings suggest that coffee intake may be inversely associated with endometrial cancer risk. Further data are needed to confirm these findings and to examine the mechanisms linking coffee intake to endometrial cancer risk to develop improved prevention strategies.

  15. Associations between flavan-3-ol intake and CVD risk in the Norfolk cohort of the European Prospective Investigation into Cancer (EPIC-Norfolk).

    PubMed

    Vogiatzoglou, Anna; Mulligan, Angela A; Bhaniani, Amit; Lentjes, Marleen A H; McTaggart, Alison; Luben, Robert N; Heiss, Christian; Kelm, Malte; Merx, Marc W; Spencer, Jeremy P E; Schroeter, Hagen; Khaw, Kay-Tee; Kuhnle, Gunter G C

    2015-07-01

    Dietary intervention studies suggest that flavan-3-ol intake can improve vascular function and reduce the risk of cardiovascular diseases (CVD). However, results from prospective studies failed to show a consistent beneficial effect. Associations between flavan-3-ol intake and CVD risk in the Norfolk arm of the European Prospective Investigation into Cancer and Nutrition (EPIC-Norfolk) were investigated. Data were available from 24,885 (11,252 men; 13,633 women) participants, recruited between 1993 and 1997 into the EPIC-Norfolk study. Flavan-3-ol intake was assessed using 7-day food diaries and the FLAVIOLA Flavanol Food Composition database. Missing data for plasma cholesterol and vitamin C were imputed using multiple imputation. Associations between flavan-3-ol intake and blood pressure at baseline were determined using linear regression models. Associations with CVD risk were estimated using Cox regression analyses. Median intake of total flavan-3-ols was 1034mg/d (range: 0-8531mg/d) for men and 970mg/d (0-6695mg/d) for women, median intake of flavan-3-ol monomers was 233mg/d (0-3248mg/d) for men and 217 (0-2712mg/d) for women. There were no consistent associations between flavan-3-ol monomer intake and baseline systolic and diastolic blood pressure (BP). After 286,147 person-years of follow-up, there were 8463 cardiovascular events and 1987 CVD related deaths; no consistent association between flavan-3-ol intake and CVD risk (HR 0.93, 95% CI: 0.87; 1.00; Q1 vs Q5) or mortality was observed (HR 0.93, 95% CI: 0.84; 1.04). Flavan-3-ol intake in EPIC-Norfolk is not sufficient to achieve a statistically significant reduction in CVD risk.

  16. EDITORIAL: Proceedings of the 6th Edoardo Amaldi Conference on Gravitational Waves, Bankoku Shinryoukan, Okinawa, Japan, 20-24 June 2005 Proceedings of the 6th Edoardo Amaldi Conference on Gravitational Waves, Bankoku Shinryoukan, Okinawa, Japan, 20-24 June 2005

    NASA Astrophysics Data System (ADS)

    Mio, N.

    2006-04-01

    This issue is published as the Proceedings of the 6th Edoardo Amaldi Conference on Gravitational Waves, held on 20-24 June 2005 at Bankoku Shinryoukan in Okinawa, Japan. Since the first Amaldi conference was held in Frascati in 1994, eleven years have passed and the scale of the conference has grown with the increasing activity in the field of gravitational waves. As the centenary celebration of Einstein's 'miracle year', 2005 was called 'World Year of Physics'. Among his breakthroughs published in 1905, the special theory of relativity is recognized as the most significant revolution in physics, completely changing our views concerning time and space. Ten years later, Einstein proposed the general theory of relativity, by which he predicted the existence of gravitational waves (GWs). At that time, it was only a dream to observe a GW because its effect was so small. Efforts to detect GWs, pioneered by Weber, have continued for almost 40 years, yet their detection remained a dream. However, the presentations at this conference have convinced us that it is no longer a dream. The GW detector projects have made extraordinary advances; in particular, the significant sensitivity improvement of LIGO and the completion of the VIRGO detector mark the beginning of the new era of GW physics. Firm developments in theories and source estimations were also reported. In particular, the data analysis session was very active and various discussions were held. Elaborate experimental techniques were presented, some of them already achieving the requirements for the next generation of detectors, such as Advanced LIGO and LCGT. In addition to the earth-based detectors, many presentations concerning space detectors were contributed; they indicated that space would become the new stage for GW physics and astronomy. This issue brings together the papers which were presented at this exciting conference. The proceedings comprise two volumes; the largest part is published as a volume of

  17. New records of the squat lobster genus Munida Leach, 1820 (Crustacea: Decapoda: Anomura: Munididae) from deep-water off Okinawa Islands, Ryukyu Islands, Japan, with description of a new species.

    PubMed

    Komai, Tomoyuki; Higashiji, Takuo

    2016-05-11

    Two species of the squat lobster genus Munida Leach, 1820, M. pollioculus n. sp. and M. zebra Macpherson, 1994, are recorded from deep-waters off Okinawa Islands, the Ryukyu Islands, at depths of 1000 m and 495 m, respectively. The new species closely resembles M. clevai Macpherson, 1999 and M. microps Alcock, 1894, but it differs from the latter two in the absence of a proximal spine on the mesial margin of the cheliped dactylus and the more stout dactylus of the second pereopod. Munida zebra is first recorded from the Northwest Pacific, as well as Japanese waters, with its geographical range extended to the north from the previously known southwestern Pacific localities.

  18. Environmental studies on natural halogen compounds. I Estimation of biomass of the acorn wormPtychodera flava Eschscholtz (Hemichordata: Enteropneusta) and excretion rate of metabolites at Kattore Bay, Kohama Island, Okinawa.

    PubMed

    Higa, T; Sakemi, S

    1983-04-01

    In order to study the environmental significance of the acorn wormPtychodera flava, which excretes a copious amount of halogenated metabolites, the biomass and the excretion rate were estimated at Kattore Bay, Kohama Island, Okinawa. The habitat, which extends over 1 km(2), could be divided into two areas: zone A, 3.0 × 10(5)m(2), density 95.6/m(2); and zone B, 7.2 × 10(5) m(2), density 48.8/m(2), according to the densities. The total population was estimated to be 6.4 × 10(7) ± 2.0 × 10(7) individuals or 93.0 ± 28.9 tons. These worms daily excrete about 480 tons of fecal sand which was estimated to contain 43 kg of the material extractable with organic solvents. The material contained halogenated metabolites which showed antimicrobial activity.

  19. The mechanism of formation of the seafloor massive sulfide ore body beneath the seafloor at HAKUREI Site in Izena Caldera, Middle Okinawa Trough

    NASA Astrophysics Data System (ADS)

    Yoshizumi, R.; Urabe, T.

    2012-12-01

    The first seafloor hydrothermal activity in northwest Pacific was found at the northeastern rim of the Izena Caldera (Jade Site), Middle Okinawa Trough in 1988 (Halbach et al.,1989). The tectonic setting of the sulfide occurrence, even though small in amount, is similar to that of Kuroko deposits which are the volcanogenic massive sulfide (VMS) deposits found in volcano-sedimentary units in northern Japan. Later, large seafloor massive sulfide (SMS) ore bodies were discovered above and beneath the seafloor in the central part of the Izena Caldera (HAKUREI Site). The ore reserve is estimated to be 5million tons based on some 100 short (<20 meters), dense drillings (Japan Oil, Gas and Metals National Corporation (JOGMEC), 2011), and is regarded as the biggest "proven" SMS deposit in the world. It is worthy to note that the HAKUREI ore deposit can be divided into Ore A (Upper ore bodies) and the Ore B (Lower ore bodies) which are separated by silt and pumice-rich sedimentary layer of a few meter in thickness. The Upper ore bodies are composed of sulfide "mounds" and "chimneys", which are commonly observed in hydrothermal areas. However, the nature of the Lower ore bodies remain uninvestigated. We conducted two research cruises at the HAKUREI site in 2011: TAIGA11 cruise of Exploration Vessel Hakurei-Maru NO.2 (JOGMEC) with Benthic Multicoreing System (BMS) and NT11-15 cruise of R/V Natshushima with ROV Hyper Dolphin (JAMSTEC). In the former cruise, a core (H-1) 5.4m in length was drilled to intersect both the Upper and Lower ore bodies which are separated by sediment using BMS. While, in latter cruise, volcanic rocks (aphyric rhyolite) and sulfide ores (Upper ore) were collected using Hyper Dolphin. The obtained sulfide ores were served for examination with the ore microscopy, electron probe microanalyzer (EPMA) and heating stage for fluid inclusions in barite in ore. Sphalerite and galena dominate at upper part of the Lower ore, while chalcopyrite and covellite

  20. THE XMM-NEWTON/EPIC X-RAY LIGHT CURVE ANALYSIS OF WR 6

    SciTech Connect

    Ignace, R.; Gayley, K. G.; Hamann, W.-R.; Oskinova, L. M.; Huenemoerder, D. P.; Pollock, A. M. T.; McFall, M.

    2013-09-20

    We obtained four pointings of over 100 ks each of the well-studied Wolf-Rayet star WR 6 with the XMM-Newton satellite. With a first paper emphasizing the results of spectral analysis, this follow-up highlights the X-ray variability clearly detected in all four pointings. However, phased light curves fail to confirm obvious cyclic behavior on the well-established 3.766 day period widely found at longer wavelengths. The data are of such quality that we were able to conduct a search for event clustering in the arrival times of X-ray photons. However, we fail to detect any such clustering. One possibility is that X-rays are generated in a stationary shock structure. In this context we favor a corotating interaction region (CIR) and present a phenomenological model for X-rays from a CIR structure. We show that a CIR has the potential to account simultaneously for the X-ray variability and constraints provided by the spectral analysis. Ultimately, the viability of the CIR model will require both intermittent long-term X-ray monitoring of WR 6 and better physical models of CIR X-ray production at large radii in stellar winds.

  1. Physical activity and lung cancer among non-smokers: a pilot molecular epidemiological study within EPIC.

    PubMed

    Rundle, Andrew; Richie, John; Steindorf, Karen; Peluso, Marco; Overvad, Kim; Raaschou-Nielsen, Ole; Clavel-Chapelon, Francoise; Linseisen, Jacob P; Boeing, Heiner; Trichopoulou, Antonia; Palli, Domenico; Krogh, Vittorio; Tumino, Rosario; Panico, Salvatore; Bueno-De-Mesquita, Hendrik B; Peeters, Petra H; Lund, Eiliv; Gonzalez, Carlos A; Martinez, Carmen; Dorronsoro, Miren; Barricarte, Aurelio; Tormo, M Jose; Quiros, Josèr; Agudo, Antonio; Berglund, Goran; Jarvholm, Bengt; Bingham, Sheila; Key, Timothy J; Gormally, Emmanuelle; Saracci, Rodolfo; Kaaks, Rudolf; Riboli, Elio; Vineis, Paolo

    2010-02-01

    The association between physical activity, potential intermediate biomarkers and lung cancer risk was investigated in a study of 230 cases and 648 controls nested within the European Prospective Investigation of Cancer and Nutrition. Data on white blood cell aromatic-DNA adducts by (32)P-post-labelling and glutathione (GSH) in red blood cells were available from a subset of cases and controls. Compared with the first quartile, the fourth quartile of recreational physical activity was associated with a lower lung cancer risk (odds ratio (OR) 0.56, 95% confidence interval (CI) 0.35-0.90), higher GSH levels (+1.87 micromol GSH g(-1) haemoglobin, p = 0.04) but not with the presence of high levels of adducts (OR 1.05, 95% CI 0.38-2.86). Despite being associated with recreational physical activity, in these small-scale pilot analyses GSH levels were not associated with lung cancer risk (OR 0.95, 95% CI 0.84-1.07 per unit increase in GSH levels). Household and occupational activity was not associated with lung cancer risk or biomarker levels.

  2. Application of a XMM-Newton EPIC Monte Carlo to Analysis And Interpretation of Data for Abell 1689, RXJ0658-55 And the Centaurus Clusters of Galaxies

    SciTech Connect

    Andersson, Karl E.; Peterson, J.R.; Madejski, G.M.; /SLAC /KIPAC, Menlo Park

    2007-04-17

    We propose a new Monte Carlo method to study extended X-ray sources with the European Photon Imaging Camera (EPIC) aboard XMM Newton. The Smoothed Particle Inference (SPI) technique, described in a companion paper, is applied here to the EPIC data for the clusters of galaxies Abell 1689, Centaurus and RXJ 0658-55 (the ''bullet cluster''). We aim to show the advantages of this method of simultaneous spectral-spatial modeling over traditional X-ray spectral analysis. In Abell 1689 we confirm our earlier findings about structure in temperature distribution and produce a high resolution temperature map. We also confirm our findings about velocity structure within the gas. In the bullet cluster, RXJ 0658-55, we produce the highest resolution temperature map ever to be published of this cluster allowing us to trace what looks like the motion of the bullet in the cluster. We even detect a south to north temperature gradient within the bullet itself. In the Centaurus cluster we detect,