On the nature of the unidentified high latitude UHURU sources

NASA Technical Reports Server (NTRS)

Holt, S. S.; Boldt, E. A.; Serlemitsos, P. J.; Murray, S. S.; Giacconi, R.; Kellogg, E. M.; Matilsky, T. A.

1973-01-01

It is found that the unidentified high latitude UHURU sources can have either of two very different explanations. They must either reside at great distances with luminosity equivalent to or greater than 10 to the 46th power ergs/sec, or be contained in the galaxy with luminosity equivalent to or less than 10 to the 34th power ergs/sec. The two possibilities are indistinguishable with the available data.

Sources and sinks of formic, acetic, and pyruvic acids over central Amazonia. II - Wet season

NASA Technical Reports Server (NTRS)

Talbot, R. W.; Andreae, M. O.; Berresheim, H.; Jacob, D. J.; Beecher, K. M.

1990-01-01

Potential sources and sinks of formic, acetic, and pyruvic acids over the Amazon forest were investigated using a photochemical model and data collected on gas phase concentrations of these acids in the forest canopy, boundary layer, and free troposphere over the central Amazon Basin during the 1987 wet season. It was found that the atmospheric reactions previously suggested in the literature as sources of carboxylic acids (i.e., the gas phase decomposition of isoprene, the reaction between CH3CO3 and a peroxide, and aqueous phase oxidation of CH2O) appear to be too slow to explain the observed concentrations, suggesting that other atmospheric reactions, so far unidentified, could make a major contribution to the carboxylic acid budgets.

QUASI-STAR JETS AS UNIDENTIFIED GAMMA-RAY SOURCES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Czerny, Bozena; Sikora, Marek; Janiuk, Agnieszka

2012-08-10

Gamma-ray catalogs contain a considerable amount of unidentified sources. Many of these are located out of the Galactic plane and therefore may have extragalactic origin. Here we assume that the formation of massive black holes in galactic nuclei proceeds through a quasi-star stage and consider the possibility of jet production by such objects. Those jets would be the sources of collimated synchrotron and Compton emission, extending from radio to gamma rays. The expected lifetimes of quasi-stars are of the order of million of years while the jet luminosities, somewhat smaller than that of quasar jets, are sufficient to account formore » the unidentified gamma-ray sources. The jet emission dominates over the thermal emission of a quasi-star in all energy bands, except when the jet is not directed toward an observer. The predicted synchrotron emission peaks in the IR band, with the flux close to the limits of the available IR all sky surveys. The ratio of the gamma-ray flux to the IR flux is found to be very large ({approx}60), much larger than in BL Lac objects but reached by some radio-loud quasars. On the other hand, radio-loud quasars show broad emission lines while no such lines are expected from quasi-stars. Therefore, the differentiation between various scenarios accounting for the unidentified gamma-ray sources will be possible at the basis of the photometry and spectroscopy of the IR/optical counterparts.« less

Estimation of Polychlorinated Biphenyl Sources in Industrial Port Sediments Using a Bayesian Semifactor Model Considering Unidentified Sources.

PubMed

Anezaki, Katsunori; Nakano, Takeshi; Kashiwagi, Nobuhisa

2016-01-19

Using the chemical balance method, and considering the presence of unidentified sources, we estimated the origins of PCB contamination in surface sediments of Muroran Port, Japan. It was assumed that these PCBs originated from four types of Kanechlor products (KC300, KC400, KC500, and KC600), combustion and two kinds of pigments (azo and phthalocyanine). The characteristics of these congener patterns were summarized on the basis of principal component analysis and explanatory variables determined. A Bayesian semifactor model (CMBK2) was applied to the explanatory variables to analyze the sources of PCBs in the sediments. The resulting estimates of the contribution ratio of each kind of sediment indicate that the existence of unidentified sources can be ignored and that the assumed seven sources are adequate to account for the contamination. Within the port, the contribution ratio of KC500 and KC600 (used as paints for ship hulls) was extremely high, but outside the port, the influence of azo pigments was observable to a limited degree. This indicates that environmental PCBs not derived from technical PCBs are present at levels that cannot be ignored.

Multiwavelength observations of unidentified high energy gamma ray sources

NASA Technical Reports Server (NTRS)

Halpern, Jules P.

1993-01-01

As was the case for COS B, the majority of high-energy (greater than 100 MeV) gamma-ray sources detected by the EGRET instrument on GRO are not immediately identifiable with cataloged objects at other wavelengths. These persistent gamma-ray sources are, next to the gamma-ray bursts, the least understood objects in the universe. Even a rudimentary understanding of their nature awaits identifications and follow-up work at other wavelengths to tell us what they are. The as yet unidentified sources are potentially the most interesting, since they may represent unrecognized new classes of astronomical objects, such as radio-quiet pulsars or new types of active galactic nuclei (AGN's). This two-year investigation is intended to support the analysis, correlation, and theoretical interpretation of data that we are obtaining at x ray, optical, and radio wavelengths in order to render the gamma-ray data interpretable. According to plan, in the first year concentration was on the identification and study of Geminga. The second year will be devoted to studies of similar unidentified gamma-ray sources which will become available in the first EGRET catalogs. The results obtained so far are presented in the two papers which are reproduced in the Appendix. In these papers, we discuss the pulse profiles of Geminga, the geometry and efficiency of the magnetospheric accelerator, the distance to Geminga, the implications for theories of polar cap heating, the effect of the magnetic field on the surface emission and environment of the neutron star, and possible interpretations of a radio-quiet Geminga. The implications of the other gamma-ray pulsars which were discovered to have high gamma-ray efficiency are also discussed, and the remaining unidentified COS B sources are attributed to a population of efficient gamma-ray sources, some of which may be radio quiet.

Evidence for a New Class of Extreme Ultraviolet Sources

NASA Technical Reports Server (NTRS)

Maoz, Dan; Ofek, Eran O.; Shemi, Amotz

1997-01-01

Most of the sources detected in the extreme ultraviolet (EUV; 100-600 A) by the ROSAT/WFC and EUVE all-sky surveys have been identified with active late-type stars and hot white dwarfs that are near enough to the Earth to escape absorption by interstellar gas. However, about 15 per cent of EUV sources are as yet unidentified with any optical counterparts. We examine whether the unidentified EUV sources may consist of the same population of late-type stars and white dwarfs. We present B and R photometry of stars in the fields of seven of the unidentified EUV sources. We detect in the optical the entire main-sequence and white dwarf population out to the greatest distances where they could still avoid absorption. We use color-magnitude diagrams to demonstrate that, in most of the fields, none of the observed stars has the colours and magnitudes of late-type dwarfs at distances less than 100 pc. Similarly, none of the observed stars is a white dwarf within 500 pc that is hot enough to be a EUV emitter. The unidentified EUV sources we study are not detected in X-rays, while cataclysmic variables, X-ray binaries, and active galactic nuclei generally are. We conclude that some of the EUV sources may be a new class of nearby objects, which are either very faint at optical bands or which mimic the colours and magnitudes of distant late-type stars or cool white dwarfs. One candidate for optically faint objects is isolated old neutron stars, slowly accreting interstellar matter. Such neutron stars are expected to be abundant in the Galaxy, and have not been unambiguously detected.

ISO Spectroscopy of Proto-Planetary Nebulae

NASA Technical Reports Server (NTRS)

Hrivnak, Bruce J.

2000-01-01

The goal of this program was to determine the chemical properties of the dust shells around protoplanetary nebulae (PPNs) through a study of their short-wavelength (6-45 micron) infrared spectra. PPNs are evolved stars in transition from the asymptotic giant branch to the planetary nebula stages. Spectral features in the 10 to 20 gm region indicate the chemical nature (oxygen- or carbon-rich), and the strengths of the features relate to the physical properties of the shells. A few bright carbon-rich PPNs have been observed to show PAH features and an unidentified 21 micron emission feature. We used the Infrared Space Observatory (ISO) to observe a sample of IRAS sources that have the expected properties of PPNs and for which we have accurate positions. Some of these have optical counterparts (proposal SWSPPN01) and some do not (SWSPPN02). We had previously observed these from the ground with near-infrared photometry and, for those with visible counterparts, visible photometry and spectroscopy, which we have combined with these new ISO data in the interpretation of the spectra. We have completed a study of the unidentified emission feature at 21 micron in eight sources. We find the shape of the feature to be the same in all of the sources, with no evidence of any substructure. The ratio of the emission peak to continuum ranges from 0.13 to 1.30. We have completed a study of seven PPNs and two other carbon-rich objects for which we had obtained ISO 2-45 micron observations. The unidentified emission features at 21 and 30 micron were detected in six sources, including four new detections of the 30 micron feature. This previously unresolved 30 micron feature was resolved and found to consist of a broad feature peaking at 27.2 micron (the "30 micron" feature) and a narrower feature peaking at 25.5 micron (the "26 micron" feature). This new 26 micron feature is detected in eight sources and is particularly strong in IRAS Z02229+6208 and 16594-4656. The unidentified features at 3.3, 6,2, 7.7, and 11.3 micron, which are commonly observed in planetary nebulae and HII regions, are also seen in these PPNs. However, their strengths relative to the continuum plateaus at 8 and 12 micron are weaker than in planetary nebulae. The 6.9 micron feature, seen almost exclusively in PPNs, is strong. The spectral energy distributions of these PPNs were fitted with a radiative-transfer model, taking into account the emission features at 21, 26, and 30 micron. A significant fraction of the total energy output is emitted in these features: as high as 20% in the 30 micron feature and 8% in the 21 micron feature. The fact that so much energy is carried in these features suggests that the material responsible for this feature must be made of abundant elements, and most likely involves carbon. The change in the in feature strengths from stronger aliphatic bonds in PPNs to stronger aromatic bonds in PNs suggests a chemical and physical evolution in the carbonaceous circumstellar dust during this transition time scale of a few thousand years.

VizieR Online Data Catalog: Observation of first Fermi-LAT sources at Parkes (Camilo+, 2015)

NASA Astrophysics Data System (ADS)

Camilo, F.; Kerr, M.; Ray, P. S.; Ransom, S. M.; Sarkissian, J.; Cromartie, H. T.; Johnston, S.; Reynolds, J. E.; Wolff, M. T.; Freire, P. C. C.; Bhattacharyya, B.; Ferrara, E. C.; Keith, M.; Michelson, P. F.; Parkinson, P. M. S.; Wood, K. S.

2017-10-01

Keith et al. (2011MNRAS.414.1292K) used a digital filterbank at Parkes to search 11 unidentified sources from the first Fermi-LAT catalog (1FGL; Abdo et al. 2010, J/ApJS/188/405). Two MSPs and one slow pulsar were discovered in single observations of each target at a central frequency of 1.4 GHz. Subsequently, one of these MSPs was found to be associated with the corresponding LAT source. At nearly the same time, in late 2009, we used an analog filterbank at Parkes to search 14 unidentified 1FGL sources (Kerr et al. 2012ApJ...748L...2K). The single observations of these targets resulted in the detection of six MSPs, five of them discoveries. However, confirmation of some of these MSPs was not easy: the search observations lasted for 1-2 hr each, but some of the pulsars were not detected in equivalent initial confirmation attempts, owing to the effects of interstellar scintillation. These and other selection effects (see Section 2.2 for details) led us to search some promising unidentified LAT sources repeatedly. (1 data file).

Parking lot sealcoat: An unrecognized source of urban polycyclic aromatic hydrocarbons

USGS Publications Warehouse

Mahler, B.J.; Van Metre, P.C.; Bashara, T.J.; Wilson, J.T.; Johns, D.A.

2005-01-01

Polycyclic aromatic hydrocarbons (PAHs) are a ubiquitous contaminant in urban environments. Although numerous sources of PAHs to urban runoff have been identified, their relative importance remains uncertain. We show that a previously unidentified source of urban PAHs, parking lot sealcoat, may dominate loading of PAHs to urban water bodies in the United States. Particles in runoff from parking lots with coal-tar emulsion sealcoat had mean concentrations of PAHs of 3500 mg/kg, 65 times higher than the mean concentration from unsealed asphalt and cement lots. Diagnostic ratios of individual PAHs indicating sources are similar for particles from coal-tar emulsion sealed lots and suspended sediment from four urban streams. Contaminant yields projected to the watershed scale for the four associated watersheds indicate that runoff from sealed parking lots could account for the majority of stream PAH loads.

Unidentified Flying Objects (UFOs). LC Science Tracer Bullet.

ERIC Educational Resources Information Center

Library of Congress, Washington, DC. Science and Technology Div.

This guide lists information sources dealing with unidentified flying objects (UFOs). Not meant to be a comprehensive bibliography, this compilation is designed--as the name of the series implies--to put the reader "on target." Included are: (1) subject headings used by the Library of Congress, under which publications on this subject…

X-ray Studies of Unidentified Galactic TeV Gamma-ray Sources

NASA Astrophysics Data System (ADS)

Pühlhofer, Gerd

2009-05-01

Many of the recently discovered Galactic TeV sources remain unidentified to date. A large fraction of the sources is possibly associated with relic pulsar wind nebula (PWN) systems. One key question here is the maximum energy (beyond TeV) attained in the compact PWNe. Hard X-ray emission can trace those particles, but current non-focussing X-ray instruments above 10 keV have difficulties to deconvolve the hard pulsar spectrum from its surrounding nebula. Some of the new TeV sources are also expected to originate from middle-aged and possibly even from old supernova remnants (SNR). But no compelling case for such an identification has been found yet. In established young TeV-emitting SNRs, X-ray imaging above 10 keV could help to disentangle the leptonic from the hadronic emission component in the TeV shells, if secondary electrons produced in hadronic collisions can be effectively detected. As SNRs get older, the high energy electron component is expected to fade away. This may allow to verify the picture through X-ray spectral evolution of the source population. Starting from the lessons we have learned so far from X-ray follow-up observations of unidentified TeV sources, prospects for Simbol-X to resolve open questions in this field will be discussed.

Parking lot sealcoat: an unrecognized source of urban polycyclic aromatic hydrocarbons

DOE Office of Scientific and Technical Information (OSTI.GOV)

Barbara J. Mahler; Peter C. Van Metre; Thomas J. Bashara

2005-08-01

Polycyclic aromatic hydrocarbons (PAHs) are a ubiquitous contaminant in urban environments. Although numerous sources of PAHs to urban runoff have been identified, their relative importance remains uncertain. The authors show that a previously unidentified source of urban PAHs, parking lot sealcoat, may dominate loading of PAHs to urban water bodies in the United States. Particles in runoff from parking lots with coal-tar emulsion sealcoat had mean concentrations of PAHs of 3500 mg/kg, 65 times higher than the mean concentration from unsealed asphalt and cement lots. Diagnostic ratios of individual PAHs indicating sources are similar for particles from coal-tar emulsion sealedmore » lots and suspended sediment from four urban streams. Contaminant yields projected to the watershed scale for the four associated watersheds indicate that runoff from sealed parking lots could account for the majority of stream PAH loads. 35 refs., 6 figs., 2 tabs.« less

Identifying EGRET Sources

NASA Technical Reports Server (NTRS)

Schlegel, E.; Norris, Jay P. (Technical Monitor)

2002-01-01

This project was awarded funding from the CGRO program to support ROSAT and ground-based observations of unidentified sources from data obtained by the EGRET instrument on the Compton Gamma-Ray Observatory. The critical items in the project are the individual ROSAT observations that are used to cover the 99% error circle of the unidentified EGRET source. Each error circle is a degree or larger in diameter. Each ROSAT field is about 30 deg in diameter. Hence, a number (>4) of ROSAT pointings must be obtained for each EGRET source to cover the field. The scheduling of ROSAT observations is carried out to maximize the efficiency of the total schedule. As a result, each pointing is broken into one or more sub-pointings of various exposure times. This project was awarded ROSAT observing time for four unidentified EGRET sources, summarized in the table. The column headings are defined as follows: 'Coverings' = number of observations to cover the error circle; 'SubPtg' = total number of sub-pointings to observe all of the coverings; 'Rec'd' = number of individual sub-pointings received to date; 'CompFlds' = number of individual coverings for which the requested complete exposure has been received. Processing of the data can not occur until a complete exposure has been accumulated for each covering.

The Gould's Belt Very Large Array Survey. IV. The Taurus-Auriga Complex

NASA Astrophysics Data System (ADS)

Dzib, Sergio A.; Loinard, Laurent; Rodríguez, Luis F.; Mioduszewski, Amy J.; Ortiz-León, Gisela N.; Kounkel, Marina A.; Pech, Gerardo; Rivera, Juana L.; Torres, Rosa M.; Boden, Andrew F.; Hartmann, Lee; Evans, Neal J., II; Briceño, Cesar; Tobin, John

2015-03-01

We present a multi-epoch radio study of the Taurus-Auriga star-forming complex made with the Karl G. Jansky Very Large Array at frequencies of 4.5 GHz and 7.5 GHz. We detect a total of 610 sources, 59 of which are related to young stellar objects (YSOs) and 18 to field stars. The properties of 56% of the young stars are compatible with non-thermal radio emission. We also show that the radio emission of more evolved YSOs tends to be more non-thermal in origin and, in general, that their radio properties are compatible with those found in other star-forming regions. By comparing our results with previously reported X-ray observations, we notice that YSOs in Taurus-Auriga follow a Güdel-Benz relation with κ = 0.03, as we previously suggested for other regions of star formation. In general, YSOs in Taurus-Auriga and in all the previous studied regions seem to follow this relation with a dispersion of ~1 dex. Finally, we propose that most of the remaining sources are related with extragalactic objects but provide a list of 46 unidentified radio sources whose radio properties are compatible with a YSO nature.

The bright unidentified γ-ray source 1FGL J1227.9–4852: Can it be associated with a low-mass X-ray binary? [The bright unidentified γ-ray source 1FGL J1227.9–4852: Can it be associated with an LMXB?

DOE PAGES

Hill, A. B.; Szostek, A.; Corbel, S.; ...

2011-07-08

We present an analysis of high energy (HE; 0.1–300 GeV) γ-ray observations of 1FGL J1227.9–4852 with the Fermi Gamma-ray Space Telescope, follow-up radio observations with the Australia Telescope Compact Array, Giant Metrewave Radio Telescope and Parkes radio telescopes of the same field and follow-up optical observations with the ESO VLT. We also examine archival XMM– Newton and INTEGRAL X-ray observations of the region around this source. The γ-ray spectrum of 1FGL J1227.9–4852 is best fitted with an exponentially cut-off power law, reminiscent of the population of pulsars observed by Fermi. A previously unknown, compact radio source within the 99.7 permore » cent error circle of 1FGL J1227.9–4852 is discovered and has a morphology consistent either with an AGN core/jet structure or with two roughly symmetric lobes of a distant radio galaxy. A single bright X-ray source XSS J12270–4859, a low-mass X-ray binary, also lies within the 1FGL J1227.9–4852 error circle and we report the first detection of radio emission from this source. The potential association of 1FGL J1227.9–4852 with each of these counterparts is discussed. Based upon the available data we find the association of the γ-ray source to the compact double radio source unlikely and suggest that XSS J12270–4859 is a more likely counterpart to the new HE source. As a result, we propose that XSS J12270–4859 may be a millisecond binary pulsar and draw comparisons with PSR J1023+0038.« less

Gamma-ray astronomy with muons: Sensitivity of IceCube to PeVatrons in the Southern sky

DOE Office of Scientific and Technical Information (OSTI.GOV)

Halzen, Francis; O'Murchadha, Aongus; Kappes, Alexander

2009-10-15

Northern hemisphere TeV gamma-ray observatories such as Milagro and Tibet AS{gamma} have demonstrated the importance of all-sky instruments by discovering previously unidentified sources that may be the PeVatrons producing cosmic rays up to the knee in the cosmic ray spectrum. We evaluate the potential of IceCube to identify similar sources in the southern sky by detailing an analytic approach to determine fluxes of muons from TeV gamma-ray showers. We apply this approach to known gamma-ray sources such as supernova remnants. We find that, similar to Milagro, detection is possible in 10 years for pointlike PeVatrons with fluxes stronger than severalmore » 10{sup -11} particles TeV{sup -1} cm{sup -2} s{sup -1}.« less

Concerning sources of O/1D/ in Aurora - Electron impact and dissociative recombination

NASA Technical Reports Server (NTRS)

Sharp, W. E.; Ortland, D.; Cageao, R.

1983-01-01

The present investigation is concerned with two questions. One is related to the possibility that the O(1D) level is produced by an as yet unidentified process in aurora. The second question is concerned with the need for an additional source and the altitude over which it is required. The data base of the AE satellite (AE-D in particular) was examined for this study. It is found that dissociative recombination and electron impact are inadequate sources of O(1D) in aurora. Nearly 90% of the source function is unidentified below 200 km and about 55% is missing above 250 km. The possibility that thermal electron impact could provide the missing source above 250 km was examined. Calculations showed that the missing source above 250 km could be explained by thermal electron impact if the electron temperatures were approximately 2900 K.

The nature of fifty Palermo Swift-BAT hard X-ray objects through optical spectroscopy

NASA Astrophysics Data System (ADS)

Rojas, A. F.; Masetti, N.; Minniti, D.; Jiménez-Bailón, E.; Chavushyan, V.; Hau, G.; McBride, V. A.; Bassani, L.; Bazzano, A.; Bird, A. J.; Galaz, G.; Gavignaud, I.; Landi, R.; Malizia, A.; Morelli, L.; Palazzi, E.; Patiño-álvarez, V.; Stephen, J. B.; Ubertini, P.

2017-07-01

We present the nature of 50 unidentified hard X-ray emitting objects detected with Swift-BAT and listed as of unidentified nature in the 54-month Palermo BAT catalogue. We found 45 extragalactic sources: 26 type 1 AGN, 15 type 2 AGN, one type 1 QSO, one starburst galaxy, one X-ray bright optically normal galaxy, and one LINER. We report 30 new redshift measurements, 13 confirmations and 2 more accurate redshift values. The remaining five objects are galactic sources: three are Cataclismic Variables, one is a X-ray Binary, and one is an active star.

RXTE All-Sky Slew Survey. Catalog of X-Ray Sources at B Greater Than 10 deg

NASA Technical Reports Server (NTRS)

Revnivtsev, M.; Sazonov, S.; Jahoda, K.; Gilfanov, M.

2004-01-01

We report results of a serendipitous hard X-ray (3-20 keV), nearly all-sky (absolute value of b greater than l0 deg.) survey based on RXTE/PCA observations performed during satellite reorientations in 1996-2002. The survey is 80% (90%) complete to a 4(sigma) limiting flux of approx. = 1.8 (2.5) x 10(exp -l1) erg/s sq cm in the 3-20 keV band. The achieved sensitivity in the 3-8 keV and 8-20 keV subbands is similar to and an order of magnitude higher than that of the previously record HEAO-1 A1 and HEAO-1 A4 all-sky surveys, respectively. A combined 7 x 10(exp 3) sq. deg area of the sky is sampled to flux levels below l0(exp -11) erg/ s sq cm (3-20 keV). In total 294 sources are detected and localized to better than 1 deg. 236 (80%) of these can be confidently associated with a known astrophysical object; another 22 likely result from the superposition of 2 or 3 closely located known sources. 35 detected sources remain unidentified, although for 12 of these we report a likely soft X-ray counterpart from the ROSAT all-sky survey bright source catalog. Of the reliably identified sources, 63 have local origin (Milky Way, LMC or SMC), 64 are clusters of galaxies and 100 are active galactic nuclei (AGN). The fact that the unidentified X-ray sources have hard spectra suggests that the majority of them are AGN, including highly obscured ones (N(sub H) greater than l0(exp 23)/sq cm). For the first time we present a log N-log S diagram for extragalactic sources above 4 x l0(exp -12) erg/ s sq cm at 8-20 keV. Key words. cosmo1ogy:observations - diffuse radiation - X-rays general

Discovery of a novel retrovirus sequence in an Australian native rodent (Melomys burtoni): a putative link between gibbon ape leukemia virus and koala retrovirus.

PubMed

Simmons, Greg; Clarke, Daniel; McKee, Jeff; Young, Paul; Meers, Joanne

2014-01-01

Gibbon ape leukaemia virus (GALV) and koala retrovirus (KoRV) share a remarkably close sequence identity despite the fact that they occur in distantly related mammals on different continents. It has previously been suggested that infection of their respective hosts may have occurred as a result of a species jump from another, as yet unidentified vertebrate host. To investigate possible sources of these retroviruses in the Australian context, DNA samples were obtained from 42 vertebrate species and screened using PCR in order to detect proviral sequences closely related to KoRV and GALV. Four proviral partial sequences totalling 2880 bases which share a strong similarity with KoRV and GALV were detected in DNA from a native Australian rodent, the grassland melomys, Melomys burtoni. We have designated this novel gammaretrovirus Melomys burtoni retrovirus (MbRV). The concatenated nucleotide sequence of MbRV shares 93% identity with the corresponding sequence from GALV-SEATO and 83% identity with KoRV. The geographic ranges of the grassland melomys and of the koala partially overlap. Thus a species jump by MbRV from melomys to koalas is conceivable. However the genus Melomys does not occur in mainland South East Asia and so it appears most likely that another as yet unidentified host was the source of GALV.

High-resolution radio and X-ray observations of the supernova remnant W28

NASA Technical Reports Server (NTRS)

Andrews, M. D.; Basart, J. P.; Lamb, R. C.; Becker, R. H.

1983-01-01

The present study has the objective to report the first high resolution radio and X-ray observations of the central part of the galactic supernova remnant, W28, taking into account the possible association of the remnant with the unidentified gamma-ray source, 2CG 006-00. This gamma-ray source is approximately two-thirds as bright as the Crab pulsar above 100 MeV, and has a somewhat flatter spectrum. Both the radio and X-ray observations reveal previously unknown aspects of W28 which support the possibility of W28 being a gamma-ray source. The radio data show a flat-spectrum, nonthermal component reminiscent of the Crab Nebula and Vela, both of which are confirmed gamma-ray sources. The X-ray observations reveal a compact source within W28, again suggestive of both the Crab and Vela. If the similarities among W28, the Crab Nebula, and the Vela remnant are valid, the gamma-ray source 2CG 00-00 should be studied for periodicity, the conclusive signature of a compact source of emission.

New CO and HCN sources associated with IRAS carbon stars

NASA Technical Reports Server (NTRS)

NGUYEN-Q-RIEU; Epchtein, N.; TRUONG-BACH; Cohen, M.

1987-01-01

Emission of CO and HCN was detected in 22 out of a sample of 53 IRAS sources classified as unidentified carbon-rich objects. The sample was selected according to the presence of the silicon carbide feature as revealed by low-resolution spectra. The molecular line widths indicate that the CO and HCN emission arises from the circumstellar envelopes of very highly evolved stars undergoing mass loss. The visible stars tend to be deficient in CO as compared with unidentified sources. Most the detected CO and HCN IRAS stars are distinct and thick-shelled objects, but their infrared and CO luminosities are similar to those of IRC + 102156 AFGL and IRC-CO evolved stars. The 12 micron flux seems to be a good indicator of the distance, hence a guide for molecular searches.

AUTOCLASSIFICATION OF THE VARIABLE 3XMM SOURCES USING THE RANDOM FOREST MACHINE LEARNING ALGORITHM

DOE Office of Scientific and Technical Information (OSTI.GOV)

Farrell, Sean A.; Murphy, Tara; Lo, Kitty K., E-mail: s.farrell@physics.usyd.edu.au

In the current era of large surveys and massive data sets, autoclassification of astrophysical sources using intelligent algorithms is becoming increasingly important. In this paper we present the catalog of variable sources in the Third XMM-Newton Serendipitous Source catalog (3XMM) autoclassified using the Random Forest machine learning algorithm. We used a sample of manually classified variable sources from the second data release of the XMM-Newton catalogs (2XMMi-DR2) to train the classifier, obtaining an accuracy of ∼92%. We also evaluated the effectiveness of identifying spurious detections using a sample of spurious sources, achieving an accuracy of ∼95%. Manual investigation of amore » random sample of classified sources confirmed these accuracy levels and showed that the Random Forest machine learning algorithm is highly effective at automatically classifying 3XMM sources. Here we present the catalog of classified 3XMM variable sources. We also present three previously unidentified unusual sources that were flagged as outlier sources by the algorithm: a new candidate supergiant fast X-ray transient, a 400 s X-ray pulsar, and an eclipsing 5 hr binary system coincident with a known Cepheid.« less

Chandra and Swift Observations of Unidentified Fermi-LAT Objects

NASA Astrophysics Data System (ADS)

Donato, Davide; Cheung, T.; Gehrels, N.

2010-03-01

In the last year we targeted some of the unidentified Fermi-LAT objects (UFOs) at high Galactic latitude with Chandra and Swift in order to determine the basic properties (positions, fluxes, hardness ratios) of all X-ray sources within the Fermi-LAT localization circles. These satellites enable us to detect the X-ray conterparts with a flux limit that is at least an order of magnitude lower than achieved in extant RASS data and to further follow-up at other wavelengths, with the ultimate goal to reveal the nature of these enigmatic gamma-ray sources. Here we present the results obtained with 5 Chandra pointings of high Galactic latitude UFOs in the Fermi-LAT 3-months bright source list. The association of detected X-ray sources within the improved 11-months Fermi-LAT localization circles with available optical and radio observations is discussed.

Spectral Modeling of the EGRET 3EG Gamma Ray Sources Near the Galactic Plane

NASA Technical Reports Server (NTRS)

Bertsch, D. L.; Hartman, R. C.; Hunter, S. D.; Thompson, D. J.; Lin, Y. C.; Kniffen, D. A.; Kanbach, G.; Mayer-Hasselwander, H. A.; Reimer, O.; Sreekumar, P.

1999-01-01

The third EGRET catalog lists 84 sources within 10 deg of the Galactic Plane. Five of these are well-known spin-powered pulsars, 2 and possibly 3 others are blazars, and the remaining 74 are classified as unidentified, although 6 of these are likely to be artifacts of nearby strong sources. Several of the remaining 68 unidentified sources have been noted as having positional agreement with supernovae remnants and OB associations. Others may be radio-quiet pulsars like Geminga, and still others may belong to a totally new class of sources. The question of the energy spectral distributions of these sources is an important clue to their identification. In this paper, the spectra of the sources within 10 deg of Galactic Plane are fit with three different functional forms; a single power law, two power laws, and a power law with an exponential cutoff. Where possible, the best fit is selected with statistical tests. Twelve, and possibly an additional 5 sources, are found to have spectra that are fit by a breaking power law or by the power law with exponential cutoff function.

Six New Millisecond Pulsars From Arecibo Searches Of Fermi Gamma-Ray Sources

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cromartie, H. T.; Camilo, F.; Kerr, M.

2016-02-25

We have discovered six radio millisecond pulsars (MSPs) in a search with the Arecibo telescope of 34 unidentified gamma-ray sources from the Fermi Large Area Telescope (LAT) 4-year point source catalog. Among the 34 sources, we also detected two MSPs previously discovered elsewhere. Each source was observed at a center frequency of 327 MHz, typically at three epochs with individual integration times of 15 minutes. The new MSP spin periods range from 1.99 to 4.66 ms. Five of the six pulsars are in interacting compact binaries (period ≤ 8.1 hr), while the sixth is a more typical neutron star-white dwarfmore » binary with an 83-day orbital period. This is a higher proportion of interacting binaries than for equivalent Fermi-LAT searches elsewhere. The reason is that Arecibo’s large gain afforded us the opportunity to limit integration times to 15 minutes, which significantly increased our sensitivity to these highly accelerated systems. Seventeen of the remaining 26 gamma-ray sources are still categorized as strong MSP candidates, and will be re-searched.« less

SIX NEW MILLISECOND PULSARS FROM ARECIBO SEARCHES OF FERMI GAMMA-RAY SOURCES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cromartie, H. T.; Camilo, F.; Kerr, M.

2016-03-01

We have discovered six radio millisecond pulsars (MSPs) in a search with the Arecibo telescope of 34 unidentified gamma-ray sources from the Fermi Large Area Telescope (LAT) four year point source catalog. Among the 34 sources, we also detected two MSPs previously discovered elsewhere. Each source was observed at a center frequency of 327 MHz, typically at three epochs with individual integration times of 15 minutes. The new MSP spin periods range from 1.99 to 4.66 ms. Five of the six pulsars are in interacting compact binaries (period ≤ 8.1 hr), while the sixth is a more typical neutron star-whitemore » dwarf binary with an 83 day orbital period. This is a higher proportion of interacting binaries than for equivalent Fermi-LAT searches elsewhere. The reason is that Arecibo's large gain afforded us the opportunity to limit integration times to 15 minutes, which significantly increased our sensitivity to these highly accelerated systems. Seventeen of the remaining 26 gamma-ray sources are still categorized as strong MSP candidates, and will be re-searched.« less

Making UFOs make sense: Ufology, science, and the history of their mutual mistrust.

PubMed

Eghigian, Greg

2017-07-01

Reports of unidentified flying objects and alien encounters have sparked amateur research (ufology), government investigations, and popular interest in the subject. Historically, however, scientists have generally greeted the topic with skepticism, most often dismissing ufology as pseudoscience and believers in unidentified flying objects and aliens as irrational or abnormal. Believers, in turn, have expressed doubts about the accuracy of academic science. This study examines the historical sources of the mutual mistrust between ufologists and scientists. It demonstrates that any science doubt surrounding unidentified flying objects and aliens was not primarily due to the ignorance of ufologists about science, but rather a product of the respective research practices of and relations between ufology, the sciences, and government investigative bodies.

The assessment of source attribution of soil pollution in a typical e-waste recycling town and its surrounding regions using the combined organic and inorganic dataset.

PubMed

Luo, Jie; Qi, Shihua; Xie, Xianming; Gu, X W Sophie; Wang, Jinji

2017-01-01

Guiyu is a well-known electronic waste dismantling and recycling town in south China. Concentrations and distribution of the 21 mineral elements and 16 polycyclic aromatic hydrocarbons (PAHs) collected there were evaluated. Principal component analyses (PCA) applied to the data matrix of PAHs in the soil extracted three major factors explaining 85.7% of the total variability identified as traffic emission, coal combustion, and an unidentified source. By using metallic or metalloid element concentrations as variables, five principal components (PCs) were identified and accounted for 70.4% of the information included in the initial data matrix, which can be denoted as e-waste dismantling-related contamination, two different geological origins, anthropogenic influenced source, and marine aerosols. Combining the 21 metallic and metalloid element datasets with the 16 PAH concentrations can narrow down the coarse source and decrease the unidentified contribution to soil in the present study and therefore effectively assists the source identification process.

A search for pre-main-sequence stars in high-latitude molecular clouds. 3: A survey of the Einstein database

NASA Technical Reports Server (NTRS)

Caillault, Jean-Pierre; Magnani, Loris; Fryer, Chris

1995-01-01

In order to discern whether the high-latitude molecular clouds are regions of ongoing star formation, we have used X-ray emission as a tracer of youthful stars. The entire Einstein database yields 18 images which overlap 10 of the clouds mapped partially or completely in the CO (1-0) transition, providing a total of approximately 6 deg squared of overlap. Five previously unidentified X-ray sources were detected: one has an optical counterpart which is a pre-main-sequence (PMS) star, and two have normal main-sequence stellar counterparts, while the other two are probably extragalactic sources. The PMS star is located in a high Galactic latitude Lynds dark cloud, so this result is not too suprising. The translucent clouds, though, have yet to reveal any evidence of star formation.

Identifying sources of tick blood meals using unidentified tandem mass spectral libraries.

PubMed

Önder, Özlem; Shao, Wenguang; Kemps, Brian D; Lam, Henry; Brisson, Dustin

2013-01-01

Rapid and reliable identification of the vertebrate species on which a disease vector previously parasitized is imperative to study ecological factors that affect pathogen distribution and can aid the development of public health programs. Here we describe a proteome profiling technique designed to identify the source of blood meals of haematophagous arthropods. This method employs direct spectral matching and thus does not require a priori knowledge of any genetic or protein sequence information. Using this technology, we detect remnants of blood in blacklegged ticks (Ixodes scapularis) and correctly determine the vertebrate species from which the blood was derived, even 6 months after the tick had fed. This biological fingerprinting methodology is sensitive, fast, cost-effective and can potentially be adapted for other biological and medical applications when existing genome-based methods are impractical or ineffective.

VizieR Online Data Catalog: VLT/SINFONI observations of MIPSGAL "bubbles" (Silva+, 2017)

NASA Astrophysics Data System (ADS)

Silva, K. M.; Flagey, N.; Noriega-Crespo, A.; Carey, S.; Ingallinera, A.

2018-04-01

Data were acquired in service mode during UT 2014 May 23-June 7 using VLT/SINFONI observations. We used two of SINFONI's four gratings providing spectral resolutions R=3000 and 4000 in the H and K bands, respectively, with the field of view of 8" by 8" (without adaptive optics). The targets are 55 MIPSGAL "bubbles" (MBs) that have not been previously classified as PNe, whose central sources were unidentified at the time of the Period 93 Call for Proposals (UT 2013 October 01), and appeared to contain at least one potential central source detected in the near-IR images of the Two Micron All-Sky Survey (2MASS, Skrutskie et al. 2006, Cat. VII/233) or the UKIRT Infrared Deep Sky Survey (UKIDSS, Warren et al. 2007MNRAS.381.1400W). (5 data files).

IDENTIFICATION OF A POPULATION OF X-RAY-EMITTING MASSIVE STARS IN THE GALACTIC PLANE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Anderson, Gemma E.; Gaensler, B. M.; Kaplan, David L.

2011-02-01

We present X-ray, infrared, optical, and radio observations of four previously unidentified Galactic plane X-ray sources: AX J163252-4746, AX J184738-0156, AX J144701-5919, and AX J144547-5931. Detection of each source with the Chandra X-ray Observatory has provided sub-arcsecond localizations, which we use to identify bright infrared counterparts to all four objects. Infrared and optical spectroscopy of these counterparts demonstrate that all four X-ray sources are extremely massive stars, with spectral classifications: Ofpe/WN9 (AX J163252-4746), WN7 (AX J184738-0156 = WR121a), WN7-8h (AX J144701-5919), and OIf{sup +} (AX J144547-5931). AX J163252-4746 and AX J184738-0156 are both luminous, hard, X-ray emitters with strong Femore » XXV emission lines in their X-ray spectra at {approx}6.7 keV. The multi-wavelength properties of AX J163252-4746 and AX J184738-0156 are not consistent with isolated massive stars or accretion onto a compact companion; we conclude that their X-ray emission is most likely generated in a colliding-wind binary (CWB) system. For both AX J144701-5919 and AX J144547-5931, the X-ray emission is an order of magnitude less luminous and with a softer spectrum. These properties are consistent with a CWB interpretation for these two sources also, but other mechanisms for the generation of X-rays cannot be excluded. There are many other as yet unidentified X-ray sources in the Galactic plane, with X-ray properties similar to those seen for AX J163252-4746, AX J184738-0156, AX J144701-5919, and AX J144547-5931. This may indicate a substantial population of X-ray-emitting massive stars and CWBs in the Milky Way.« less

Observations on particulate organic nitrates and unidentified components of NO y

NASA Astrophysics Data System (ADS)

Nielsen, Torben; Egeløv, Axel H.; Granby, Kit; Skov, Henrik

A method to determine the total content of particulate organic nitrates (PON) has been developed and ambient air measurements of PON, NO, N02, HNO3, peroxyacetyl nitrate (PAN), peroxypropionyl nitrate (PPN), gas NOY and particulate inorganic nitrate have been performed in the spring and early summer at an agricultural site in Denmark and compared with measurements of ozone, H 2O 2, SO 2, formic acid, acetic acid and methane sulphonic acid. The gas NO y detector determines the sum NO + NO 2 + HNO 2 + HNO 3 + PAN + PPN + gas phase organic nitrates + 2 × N 2O 5 + NO 3. The content of residual gas NO y ( = gas NO y - NO - NO 2 - HNO 3 - PAN - PPN) was determined and a group of unidentified NO y compounds was found. The phenomenon was observed at a site with relatively high NO x/NO y ratios compared to previous observations in U.S.A. and Canada. The residual gas NO y made up 7 ± 6% of total NOY (total NO y = gas NO y + particulate inorganic nitrate). Residual gas NO y was much higher than the particulate fraction of organic nitrates (PON). PON was only 0.25 ± 0.11% of total NO y. Both residual gas NO y and particulate organic nitrates episodes occurred with elevated concentrations of photochemical oxidants in connection with high-pressure systems suggesting atmospheric processes being the major source. Clean marine air can be discarded as a source for PON and residual gas NO y.

Chandra Studies of Unidentified X-ray Sources in the Galactic Bulge

NASA Astrophysics Data System (ADS)

Mori, Hideyuki

2013-09-01

We propose to study a complete X-ray sample in the luminosity range of > 10^34 erg s^-1 in the Galactic bulge, including 5 unidentified sources detected in the ROSAT All Sky Survey. Our goal is to obtain a clear picture about X-ray populations in the bulge, by utilizing the excellent Chandra position accuracy leading to unique optical identification together with the X-ray spectral properties. This is a new step toward understanding the formation history of the bulge. Furthermore, because the luminosity range we observe corresponds to a ``missing link'' region ever studied for a neutron star or blackhole X-ray binary, our results are also unique to test accretion disk theories at intermediate mass accretion rates.

Binary millisecond pulsar discovery via gamma-ray pulsations.

PubMed

Pletsch, H J; Guillemot, L; Fehrmann, H; Allen, B; Kramer, M; Aulbert, C; Ackermann, M; Ajello, M; de Angelis, A; Atwood, W B; Baldini, L; Ballet, J; Barbiellini, G; Bastieri, D; Bechtol, K; Bellazzini, R; Borgland, A W; Bottacini, E; Brandt, T J; Bregeon, J; Brigida, M; Bruel, P; Buehler, R; Buson, S; Caliandro, G A; Cameron, R A; Caraveo, P A; Casandjian, J M; Cecchi, C; Çelik, Ö; Charles, E; Chaves, R C G; Cheung, C C; Chiang, J; Ciprini, S; Claus, R; Cohen-Tanugi, J; Conrad, J; Cutini, S; D'Ammando, F; Dermer, C D; Digel, S W; Drell, P S; Drlica-Wagner, A; Dubois, R; Dumora, D; Favuzzi, C; Ferrara, E C; Franckowiak, A; Fukazawa, Y; Fusco, P; Gargano, F; Gehrels, N; Germani, S; Giglietto, N; Giordano, F; Giroletti, M; Godfrey, G; Grenier, I A; Grondin, M-H; Grove, J E; Guiriec, S; Hadasch, D; Hanabata, Y; Harding, A K; den Hartog, P R; Hayashida, M; Hays, E; Hill, A B; Hou, X; Hughes, R E; Jóhannesson, G; Jackson, M S; Jogler, T; Johnson, A S; Johnson, W N; Kataoka, J; Kerr, M; Knödlseder, J; Kuss, M; Lande, J; Larsson, S; Latronico, L; Lemoine-Goumard, M; Longo, F; Loparco, F; Lovellette, M N; Lubrano, P; Massaro, F; Mayer, M; Mazziotta, M N; McEnery, J E; Mehault, J; Michelson, P F; Mitthumsiri, W; Mizuno, T; Monzani, M E; Morselli, A; Moskalenko, I V; Murgia, S; Nakamori, T; Nemmen, R; Nuss, E; Ohno, M; Ohsugi, T; Omodei, N; Orienti, M; Orlando, E; de Palma, F; Paneque, D; Perkins, J S; Piron, F; Pivato, G; Porter, T A; Rainò, S; Rando, R; Ray, P S; Razzano, M; Reimer, A; Reimer, O; Reposeur, T; Ritz, S; Romani, R W; Romoli, C; Sanchez, D A; Saz Parkinson, P M; Schulz, A; Sgrò, C; do Couto e Silva, E; Siskind, E J; Smith, D A; Spandre, G; Spinelli, P; Suson, D J; Takahashi, H; Tanaka, T; Thayer, J B; Thayer, J G; Thompson, D J; Tibaldo, L; Tinivella, M; Troja, E; Usher, T L; Vandenbroucke, J; Vasileiou, V; Vianello, G; Vitale, V; Waite, A P; Winer, B L; Wood, K S; Wood, M; Yang, Z; Zimmer, S

2012-12-07

Millisecond pulsars, old neutron stars spun up by accreting matter from a companion star, can reach high rotation rates of hundreds of revolutions per second. Until now, all such "recycled" rotation-powered pulsars have been detected by their spin-modulated radio emission. In a computing-intensive blind search of gamma-ray data from the Fermi Large Area Telescope (with partial constraints from optical data), we detected a 2.5-millisecond pulsar, PSR J1311-3430. This unambiguously explains a formerly unidentified gamma-ray source that had been a decade-long enigma, confirming previous conjectures. The pulsar is in a circular orbit with an orbital period of only 93 minutes, the shortest of any spin-powered pulsar binary ever found.

High-energy sources at low radio frequency: the Murchison Widefield Array view of Fermi blazars

DOE PAGES

Giroletti, M.; Massaro, F.; D’Abrusco, R.; ...

2016-04-01

Low-frequency radio arrays are opening a new window for the study of the sky, both to study new phenomena and to better characterize known source classes. Being flat-spectrum sources, blazars are so far poorly studied at low radio frequencies. In this paper, we characterize the spectral properties of the blazar population at low radio frequency, compare the radio and high-energy properties of the gamma-ray blazar population, and search for radio counterparts of unidentified gamma-ray sources. We cross-correlated the 6100 deg 2 Murchison Widefield Array Commissioning Survey catalogue with the Roma blazar catalogue, the third catalogue of active galactic nuclei detectedmore » by Fermi-LAT, and the unidentified members of the entire third catalogue of gamma-ray sources detected by Fermi-LAT. When available, we also added high-frequency radio data from the Australia Telescope 20 GHz catalogue. We find low-frequency counterparts for 186 out of 517 (36%) blazars, 79 out of 174 (45%) gamma-ray blazars, and 8 out of 73 (11%) gamma-ray blazar candidates. The mean low-frequency (120–180 MHz) blazar spectral index is (α low) = 0.57 ± 0.02: blazar spectra are flatter than the rest of the population of low-frequency sources, but are steeper than at ~GHz frequencies. Low-frequency radio flux density and gamma-ray energy flux display a mildly significant and broadly scattered correlation. Ten unidentified gamma-ray sources have a (probably fortuitous) positional match with low radio frequency sources. Low-frequency radio astronomy provides important information about sources with a flat radio spectrum and high energy. However, the relatively low sensitivity of the present surveys still misses a significant fraction of these objects. Finally, upcoming deeper surveys, such as the GaLactic and Extragalactic All-Sky MWA (GLEAM) survey, will provide further insight into this population.« less

High-energy sources at low radio frequency: the Murchison Widefield Array view of Fermi blazars

DOE Office of Scientific and Technical Information (OSTI.GOV)

Giroletti, M.; Massaro, F.; D’Abrusco, R.

Low-frequency radio arrays are opening a new window for the study of the sky, both to study new phenomena and to better characterize known source classes. Being flat-spectrum sources, blazars are so far poorly studied at low radio frequencies. In this paper, we characterize the spectral properties of the blazar population at low radio frequency, compare the radio and high-energy properties of the gamma-ray blazar population, and search for radio counterparts of unidentified gamma-ray sources. We cross-correlated the 6100 deg 2 Murchison Widefield Array Commissioning Survey catalogue with the Roma blazar catalogue, the third catalogue of active galactic nuclei detectedmore » by Fermi-LAT, and the unidentified members of the entire third catalogue of gamma-ray sources detected by Fermi-LAT. When available, we also added high-frequency radio data from the Australia Telescope 20 GHz catalogue. We find low-frequency counterparts for 186 out of 517 (36%) blazars, 79 out of 174 (45%) gamma-ray blazars, and 8 out of 73 (11%) gamma-ray blazar candidates. The mean low-frequency (120–180 MHz) blazar spectral index is (α low) = 0.57 ± 0.02: blazar spectra are flatter than the rest of the population of low-frequency sources, but are steeper than at ~GHz frequencies. Low-frequency radio flux density and gamma-ray energy flux display a mildly significant and broadly scattered correlation. Ten unidentified gamma-ray sources have a (probably fortuitous) positional match with low radio frequency sources. Low-frequency radio astronomy provides important information about sources with a flat radio spectrum and high energy. However, the relatively low sensitivity of the present surveys still misses a significant fraction of these objects. Finally, upcoming deeper surveys, such as the GaLactic and Extragalactic All-Sky MWA (GLEAM) survey, will provide further insight into this population.« less

Observations of a high-excitation transition of SO in galactic H II regions

NASA Astrophysics Data System (ADS)

Watt, G. D.; Millar, T. J.; White, G. J.; Harten, R. H.

1986-02-01

High-excitation observations of the 56-45 transition of SO at 251 GHz have been made. The central four arcminutes of the Orion-KL region have been mapped and a survey of 6 other galactic sources has been performed. Detailed chemical kinetic models have been utilised to investigate the chemistry of sulphur in view of recent estimates of sulphur depletion and the possibility of a gas phase carbon to oxygen ratio greater than 1. The authors find a link between the SO/SO2 and C/O ratios and that their data are consistent with the high C I abundance detected in the Orion ridge component. In the plateau source the enhanced abundances of SO and SO2 may be caused by a molecular outflow from an oxygen-rich star. In addition a previously undetected methanol line and an unidentified line appear in the Orion data.

Flat-Spectrum Radio Sources as Likely Counterparts of Unidentified INTEGRAL Sources (Research Note)

NASA Technical Reports Server (NTRS)

Molina, M.; Landi, R.; Bassani, L.; Malizia, A.; Stephen, J. B.; Bazzano, A.; Bird, A. J.; Gehrels, N.

2012-01-01

Many sources in the fourth INTEGRAL/IBIS catalogue are still unidentified since they lack an optical counterpart. An important tool that can help in identifying and classifying these sources is the cross-correlation with radio catalogues, which are very sensitive and positionally accurate. Moreover, the radio properties of a source, such as the spectrum or morphology, could provide further insight into its nature. In particular, flat-spectrum radio sources at high Galactic latitudes are likely to be AGN, possibly associated to a blazar or to the compact core of a radio galaxy. Here we present a small sample of 6 sources extracted from the fourth INTEGRAL/IBIS catalogue that are still unidentified or unclassified, but which are very likely associated with a bright, flat-spectrum radio object. To confirm the association and to study the source X-ray spectral parameters, we performed X-ray follow-up observations with Swift/XRT of all objects. We report in this note the overall results obtained from this search and discuss the nature of each individual INTEGRAL source. We find that 5 of the 6 radio associations are also detected in X-rays; furthermore, in 3 cases they are the only counterpart found. More specifically, IGR J06073-0024 is a flat-spectrum radio quasar at z = 1.08, IGR J14488-4008 is a newly discovered radio galaxy, while IGR J18129-0649 is an AGN of a still unknown type. The nature of two sources (IGR J07225-3810 and IGR J19386-4653) is less well defined, since in both cases we find another X-ray source in the INTEGRAL error circle; nevertheless, the flat-spectrum radio source, likely to be a radio loud AGN, remains a viable and, in fact, a more convincing association in both cases. Only for the last object (IGR J11544-7618) could we not find any convincing counterpart since the radio association is not an X-ray emitter, while the only X-ray source seen in the field is a G star and therefore unlikely to produce the persistent emission seen by INTEGRAL.

Unidentified Gamma-Ray Sources: Hunting Gamma-Ray Blazars

DOE Office of Scientific and Technical Information (OSTI.GOV)

Massaro, F.; D'Abrusco, R.; Tosti, G.

2012-04-02

One of the main scientific objectives of the ongoing Fermi mission is unveiling the nature of the unidentified {gamma}-ray sources (UGSs). Despite the large improvements of Fermi in the localization of {gamma}-ray sources with respect to the past {gamma}-ray missions, about one third of the Fermi-detected objects are still not associated to low energy counterparts. Recently, using the Wide-field Infrared Survey Explorer (WISE) survey, we discovered that blazars, the rarest class of Active Galactic Nuclei and the largest population of {gamma}-ray sources, can be recognized and separated from other extragalactic sources on the basis of their infrared (IR) colors. Basedmore » on this result, we designed an association method for the {gamma}-ray sources to recognize if there is a blazar candidate within the positional uncertainty region of a generic {gamma}-ray source. With this new IR diagnostic tool, we searched for {gamma}-ray blazar candidates associated to the UGS sample of the second Fermi {gamma}-ray catalog (2FGL). We found that our method associates at least one {gamma}-ray blazar candidate as a counterpart each of 156 out of 313 UGSs analyzed. These new low-energy candidates have the same IR properties as the blazars associated to {gamma}-ray sources in the 2FGL catalog.« less

UNIDENTIFIED {gamma}-RAY SOURCES: HUNTING {gamma}-RAY BLAZARS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Massaro, F.; Ajello, M.; D'Abrusco, R.

2012-06-10

One of the main scientific objectives of the ongoing Fermi mission is unveiling the nature of unidentified {gamma}-ray sources (UGSs). Despite the major improvements of Fermi in the localization of {gamma}-ray sources with respect to the past {gamma}-ray missions, about one-third of the Fermi-detected objects are still not associated with low-energy counterparts. Recently, using the Wide-field Infrared Survey Explorer survey, we discovered that blazars, the rarest class of active galactic nuclei and the largest population of {gamma}-ray sources, can be recognized and separated from other extragalactic sources on the basis of their infrared (IR) colors. Based on this result, wemore » designed an association method for the {gamma}-ray sources to recognize if there is a blazar candidate within the positional uncertainty region of a generic {gamma}-ray source. With this new IR diagnostic tool, we searched for {gamma}-ray blazar candidates associated with the UGS sample of the second Fermi {gamma}-ray LAT catalog (2FGL). We found that our method associates at least one {gamma}-ray blazar candidate as a counterpart to each of 156 out of 313 UGSs analyzed. These new low-energy candidates have the same IR properties as the blazars associated with {gamma}-ray sources in the 2FGL catalog.« less

Detection of 16 gamma-ray pulsars through blind frequency searches using the Fermi LAT.

PubMed

Abdo, A A; Ackermann, M; Ajello, M; Anderson, B; Atwood, W B; Axelsson, M; Baldini, L; Ballet, J; Barbiellini, G; Baring, M G; Bastieri, D; Baughman, B M; Bechtol, K; Bellazzini, R; Berenji, B; Bignami, G F; Blandford, R D; Bloom, E D; Bonamente, E; Borgland, A W; Bregeon, J; Brez, A; Brigida, M; Bruel, P; Burnett, T H; Caliandro, G A; Cameron, R A; Caraveo, P A; Casandjian, J M; Cecchi, C; Celik, O; Chekhtman, A; Cheung, C C; Chiang, J; Ciprini, S; Claus, R; Cohen-Tanugi, J; Conrad, J; Cutini, S; Dermer, C D; de Angelis, A; de Luca, A; de Palma, F; Digel, S W; Dormody, M; do Couto e Silva, E; Drell, P S; Dubois, R; Dumora, D; Farnier, C; Favuzzi, C; Fegan, S J; Fukazawa, Y; Funk, S; Fusco, P; Gargano, F; Gasparrini, D; Gehrels, N; Germani, S; Giebels, B; Giglietto, N; Giommi, P; Giordano, F; Glanzman, T; Godfrey, G; Grenier, I A; Grondin, M-H; Grove, J E; Guillemot, L; Guiriec, S; Gwon, C; Hanabata, Y; Harding, A K; Hayashida, M; Hays, E; Hughes, R E; Jóhannesson, G; Johnson, R P; Johnson, T J; Johnson, W N; Kamae, T; Katagiri, H; Kataoka, J; Kawai, N; Kerr, M; Knödlseder, J; Kocian, M L; Kuss, M; Lande, J; Latronico, L; Lemoine-Goumard, M; Longo, F; Loparco, F; Lott, B; Lovellette, M N; Lubrano, P; Madejski, G M; Makeev, A; Marelli, M; Mazziotta, M N; McConville, W; McEnery, J E; Meurer, C; Michelson, P F; Mitthumsiri, W; Mizuno, T; Monte, C; Monzani, M E; Morselli, A; Moskalenko, I V; Murgia, S; Nolan, P L; Norris, J P; Nuss, E; Ohsugi, T; Omodei, N; Orlando, E; Ormes, J F; Paneque, D; Parent, D; Pelassa, V; Pepe, M; Pesce-Rollins, M; Pierbattista, M; Piron, F; Porter, T A; Primack, J R; Rainò, S; Rando, R; Ray, P S; Razzano, M; Rea, N; Reimer, A; Reimer, O; Reposeur, T; Ritz, S; Rochester, L S; Rodriguez, A Y; Romani, R W; Ryde, F; Sadrozinski, H F-W; Sanchez, D; Sander, A; Saz Parkinson, P M; Scargle, J D; Sgrò, C; Siskind, E J; Smith, D A; Smith, P D; Spandre, G; Spinelli, P; Starck, J-L; Strickman, M S; Suson, D J; Tajima, H; Takahashi, H; Takahashi, T; Tanaka, T; Thayer, J G; Thompson, D J; Tibaldo, L; Tibolla, O; Torres, D F; Tosti, G; Tramacere, A; Uchiyama, Y; Usher, T L; Van Etten, A; Vasileiou, V; Vilchez, N; Vitale, V; Waite, A P; Wang, P; Watters, K; Winer, B L; Wolff, M T; Wood, K S; Ylinen, T; Ziegler, M

2009-08-14

Pulsars are rapidly rotating, highly magnetized neutron stars emitting radiation across the electromagnetic spectrum. Although there are more than 1800 known radio pulsars, until recently only seven were observed to pulse in gamma rays, and these were all discovered at other wavelengths. The Fermi Large Area Telescope (LAT) makes it possible to pinpoint neutron stars through their gamma-ray pulsations. We report the detection of 16 gamma-ray pulsars in blind frequency searches using the LAT. Most of these pulsars are coincident with previously unidentified gamma-ray sources, and many are associated with supernova remnants. Direct detection of gamma-ray pulsars enables studies of emission mechanisms, population statistics, and the energetics of pulsar wind nebulae and supernova remnants.

An Ultraviolet-Excess Optical Candidate for the Luminous Globular Cluster X-Ray Source in NGC 1851

NASA Technical Reports Server (NTRS)

Deutsch, Eric W.; Anderson, Scott F.; Margon, Bruce; Downes, Ronald A.

1996-01-01

The intense, bursting X-ray source in the globular cluster NGC 1851 was one of the first cluster sources discovered, but has remained optically unidentified for 25 years. We report here on results from Hubble Space Telescope WFPC2 multicolor images in NGC 1851. Our high spatial resolution images resolve approximately 200 objects in the 3 minute radius Einstein X-ray error circle, 40 times as many as in previous ground-based work. A color-magnitude diagram of the cluster clearly reveals a markedly UV-excess object with B approximately 21, (U - B) approximately -0.9, only 2 minutes from the X-ray position. The UV-excess candidate is 0.12 minutes distant from a second, unremarkable star that is 0.5 mag brighter in B; thus ground-based studies of this field are probably impractical. Three other UV-excess objects are also present among the approximately 16,000 objects in the surveyed region of the cluster, leaving an approximately 5% probability that a UV-excess object has fallen in the X-ray error circle by chance. No variability of the candidate is seen in these data, although a more complete study is required. If this object is in fact the counterpart of the X-ray source, previous inferences that some globular cluster X-ray sources are optically subluminous with respect to low-mass X-ray binaries in the field are now strengthened.

Infrared emission spectra of candidate interstellar aromatic molecules

NASA Technical Reports Server (NTRS)

Schlemmer, S.; Balucani, N.; Wagner, D. R.; Steiner, B.; Saykally, R. J.

1996-01-01

Interstellar dust is responsible, through surface reactions, for the creation of molecular hydrogen, the main component of the interstellar clouds in which new stars form. Intermediate between small, gas-phase molecules and dust are the polycyclic aromatic hydrocarbons (PAHs). Such molecules could account for 2-30% of the carbon in the Galaxy, and may provide nucleation sites for the formation of carbonaceous dust. Although PAHs have been proposed as the sources of the unidentified infrared emission bands that are observed in the spectra of a variety of interstellar sources, the emission characteristics of such molecules are still poorly understood. Here we report laboratory emission spectra of several representative PAHs, obtained in conditions approximating those of the interstellar medium, and measured over the entire spectral region spanned by the unidentified infrared bands. We find that neutral PAHs of small and moderate size can at best make only a minor contribution to these emission bands. Cations of these molecules, as well as much larger PAHs and their cations, remain viable candidates for the sources of these bands.

Five New Millisecond Pulsars from a Radio Survey of 14 Unidentified Fermi-LAT Gamma-Ray Sources

NASA Technical Reports Server (NTRS)

Kerr, M.; Camilo, F.; Johnson, T. J.; Ferrara, E. C.; Guillemot, L.; Harding, A. K.; Hessels, J.; Johnson, S.; Keith, M.; Kramer, M.;

Chandra follow up analysis on HESS J1841-055

NASA Astrophysics Data System (ADS)

Wilbert, Sven

2012-07-01

State of the art Imaging Atmospheric Cherenkow Telescopes (IACTs) like the Very Energetic Radiation Imaging Telescope Array System (VERITAS) and the High Energy Stereoscopic System (H.E.S.S) made surveys of the sky in order to discover new sources. The first and most famous is the H.E.S.S survey of the inner Galactic plane. So far more than 50 Galactic TeV Gamma-ray sources have been detected, a large number of which remain unidentified. HESS J1841-055 is one of the largest and most complex among these unidentified sources with an extension of approximately 1°. Follow up observations of the HESS J1841-055 region with Chandra, which is due to its high resolution good suited for searching for X-Ray counterparts and add-on analysis have revealed several X-ray sources spatially coincident with the multiple TeV emission peaks. The search for counterparts brought out the fact that not a single source itself but a bunch of sources of different nature, could be indeed the creators of this complex diffuse emission region; among them the SNR Kes 73, the pulsar within Kes 73, 1E 1841-45 and also the High Mass X-Ray Binary AX 184100.4-0536 and others.

Search for the Identification of 3EG J1835+5918: Evidence for a New Type of High-Energy Gamma-Ray Source?

NASA Technical Reports Server (NTRS)

Mirabal, N.; Halpern, Jules P.; Eracleous, M.; Becker, R. H.; Oliversen, Ronald (Technical Monitor)

2001-01-01

Most of the EGRET high-energy gamma-ray sources remain unidentified. It is highly likely that many of these are fainter blazars or pulsars, but there may also be new types of sources to be discovered. We have focussed our search for novel gamma-ray sources on 3EG 1835+5918, which is the brightest and most accurately positioned of the unidentified EGRET sources at high Galactic latitude (l, b = 89 deg, 25 deg). In this talk, we will summarize the results of X-ray, radio, and optical surveys of this location. In particular, we have made complete optical identifications of all of the ROSAT and ASCA sources in this region to a flux limit of approximately 1 x 10(exp -13) ergs/sq cm s. All of the X-ray sources within the EGRET error circle are radio-quiet quasars or coronally emitting stars. Previous radio pulsar searches have been unsuccessful. We set an upper limit of 3.8 mJy (at 1.4 GHz) on any possible radio counterpart to 3EG 1835+5918. We also find several quasars and white dwarfs using optical color selection, and we have monitored the entire field for variable optical objects on short and long time scales. Since no blazar-like or pulsar-like candidate has been found as a result of these searches, we assert that 3EG 1835+5918 must be lacking in one or more of the physically essential attributes of those classes of gamma-ray emitters. In particular, its radio flux is at least two orders of magnitude fainter than any of the securely identified EGRET blazars, and its soft X-ray flux is at least 30 times fainter than that of Geminga and other EGRET pulsars. If it is an AGN it lacks the beamed radio emission of blazars. If it is an isolated neutron star, it lacks both the thermal X-rays from a cooling surface and the magnetospheric non-thermal X-ray emission that is characteristic of all EGRET pulsars. As such, it is more problematic physically than Geminga, which is an ordinary pulsar that only lacks radio emission. As a pulsar, 3EG 1835+5918 would have to be either older or more distant than Geminga, and probably an even more efficient gamma-ray engine.

Two enzymes with redundant fructose bisphosphatase activity sustain gluconeogenesis and virulence in Mycobacterium tuberculosis.

PubMed

Ganapathy, Uday; Marrero, Joeli; Calhoun, Susannah; Eoh, Hyungjin; de Carvalho, Luiz Pedro Sorio; Rhee, Kyu; Ehrt, Sabine

2015-08-10

The human pathogen Mycobacterium tuberculosis (Mtb) likely utilizes host fatty acids as a carbon source during infection. Gluconeogenesis is essential for the conversion of fatty acids into biomass. A rate-limiting step in gluconeogenesis is the conversion of fructose 1,6-bisphosphate to fructose 6-phosphate by a fructose bisphosphatase (FBPase). The Mtb genome contains only one annotated FBPase gene, glpX. Here we show that, unexpectedly, an Mtb mutant lacking GLPX grows on gluconeogenic carbon sources and has detectable FBPase activity. We demonstrate that the Mtb genome encodes an alternative FBPase (GPM2, Rv3214) that can maintain gluconeogenesis in the absence of GLPX. Consequently, deletion of both GLPX and GPM2 is required for disruption of gluconeogenesis and attenuation of Mtb in a mouse model of infection. Our work affirms a role for gluconeogenesis in Mtb virulence and reveals previously unidentified metabolic redundancy at the FBPase-catalysed reaction step of the pathway.

Two enzymes with redundant fructose bisphosphatase activity sustain gluconeogenesis and virulence in Mycobacterium tuberculosis

PubMed Central

Ganapathy, Uday; Marrero, Joeli; Calhoun, Susannah; Eoh, Hyungjin; de Carvalho, Luiz Pedro Sorio; Rhee, Kyu; Ehrt, Sabine

2015-01-01

The human pathogen Mycobacterium tuberculosis (Mtb) likely utilizes host fatty acids as a carbon source during infection. Gluconeogenesis is essential for the conversion of fatty acids into biomass. A rate-limiting step in gluconeogenesis is the conversion of fructose 1,6-bisphosphate to fructose 6-phosphate by a fructose bisphosphatase (FBPase). The Mtb genome contains only one annotated FBPase gene, glpX. Here we show that, unexpectedly, an Mtb mutant lacking GLPX grows on gluconeogenic carbon sources and has detectable FBPase activity. We demonstrate that the Mtb genome encodes an alternative FBPase (GPM2, Rv3214) that can maintain gluconeogenesis in the absence of GLPX. Consequently, deletion of both GLPX and GPM2 is required for disruption of gluconeogenesis and attenuation of Mtb in a mouse model of infection. Our work affirms a role for gluconeogenesis in Mtb virulence and reveals previously unidentified metabolic redundancy at the FBPase-catalysed reaction step of the pathway. PMID:26258286

Binary Millisecond Pulsar Discovery via Gamma-Ray Pulsations

DOE PAGES

Pletsch, H. J.; Guillemot, L.; Fehrmann, H.; ...

2012-12-07

We present that millisecond pulsars, old neutron stars spun up by accreting matter from a companion star, can reach high rotation rates of hundreds of revolutions per second. Until now, all such “recycled” rotation-powered pulsars have been detected by their spin-modulated radio emission. In a computing-intensive blind search of gamma-ray data from the Fermi Large Area Telescope (with partial constraints from optical data), we detected a 2.5-millisecond pulsar, PSR J1311-3430. This unambiguously explains a formerly unidentified gamma-ray source that had been a decade-long enigma, confirming previous conjectures. Lastly, the pulsar is in a circular orbit with an orbital period ofmore » only 93 minutes, the shortest of any spin-powered pulsar binary ever found.« less

Detection of 16 Gamma-Ray Pulsars Through Blind Frequency Searches Using the Fermi LAT

DOE PAGES

Abdo, A. A.; Ackermann, M.; Ajello, M.; ...

2009-07-02

Pulsars are rapidly rotating, highly magnetized neutron stars emitting radiation across the electromagnetic spectrum. Although there are more than 1800 known radio pulsars, until recently only seven were observed to pulse in gamma rays, and these were all discovered at other wavelengths. The Fermi Large Area Telescope (LAT) makes it possible to pinpoint neutron stars through their gamma-ray pulsations. In this paper, we report the detection of 16 gamma-ray pulsars in blind frequency searches using the LAT. Most of these pulsars are coincident with previously unidentified gamma-ray sources, and many are associated with supernova remnants. Finally, direct detection of gamma-raymore » pulsars enables studies of emission mechanisms, population statistics, and the energetics of pulsar wind nebulae and supernova remnants.« less

A TALE OF THREE MYSTERIOUS SPECTRAL FEATURES IN CARBON-RICH EVOLVED STARS: THE 21 μm, 30 μm, AND “UNIDENTIFIED INFRARED” EMISSION FEATURES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mishra, Ajay; Li, Aigen; Jiang, B. W., E-mail: amishra@mail.missouri.edu, E-mail: lia@missouri.edu, E-mail: bjiang@bnu.edu.cn

2015-03-20

The mysterious “21 μm” emission feature seen almost exclusively in the short-lived protoplanetary nebula (PPN) phase of stellar evolution remains unidentified since its discovery two decades ago. This feature is always accompanied by the equally mysterious, unidentified “30 μm” feature and the so-called “unidentified infrared” (UIR) features at 3.3, 6.2, 7.7, 8.6, and 11.3 μm which are generally attributed to polycyclic aromatic hydrocarbon (PAH) molecules. The 30 μm feature is commonly observed in all stages of stellar evolution from the asymptotic giant branch through PPN to the planetary nebula phase. We explore the interrelations among the mysterious 21, 30 μm,more » and UIR features of the 21 μm sources. We derive the fluxes emitted in the observed UIR, 21, and 30 μm features from published Infrared Space Observatory or Spitzer/IRS spectra. We find that none of these spectral features correlate with each other. This argues against a common carrier (e.g., thiourea) for both the 21 μm feature and the 30 μm feature. This also does not support large PAH clusters as a possible carrier for the 21 μm feature.« less

Models for the mechanism for activating copper-zinc superoxide dismutase in the absence of the CCS Cu chaperone in Arabidopsis.

PubMed

Huang, Chien-Hsun; Kuo, Wen-Yu; Jinn, Tsung-Luo

2012-03-01

Copper-zinc superoxide dismutase (CuZnSOD; CSD) is an important antioxidant enzyme for oxidative stress protection. To date, two activation pathways have been identified in many species. One requiring the CCS, Cu chaperone for SOD, to insert Cu and activate CSD (referred to as CCS-dependent pathway), and the other works independently of CCS (referred to as CCS-independent pathway). In our previous study, we suggest an unidentified factor will work with glutathione (GSH) for CSD activation in the absence of the CCS. Here, two models of the CCS-independent mechanism are proposed. The role of the unidentified factor may work as a scaffold protein, which provides a platform for the CSD protein and Cu-GSH to interact, or as a Cu carrier, which itself can bind Cu and interact with CSD proteins. We also suggest that the CSD protein conformation at C-terminal is important in providing a docking site for unidentified factor to access.

Structural Identifiability of Dynamic Systems Biology Models

PubMed Central

Villaverde, Alejandro F.

2016-01-01

A powerful way of gaining insight into biological systems is by creating a nonlinear differential equation model, which usually contains many unknown parameters. Such a model is called structurally identifiable if it is possible to determine the values of its parameters from measurements of the model outputs. Structural identifiability is a prerequisite for parameter estimation, and should be assessed before exploiting a model. However, this analysis is seldom performed due to the high computational cost involved in the necessary symbolic calculations, which quickly becomes prohibitive as the problem size increases. In this paper we show how to analyse the structural identifiability of a very general class of nonlinear models by extending methods originally developed for studying observability. We present results about models whose identifiability had not been previously determined, report unidentifiabilities that had not been found before, and show how to modify those unidentifiable models to make them identifiable. This method helps prevent problems caused by lack of identifiability analysis, which can compromise the success of tasks such as experiment design, parameter estimation, and model-based optimization. The procedure is called STRIKE-GOLDD (STRuctural Identifiability taKen as Extended-Generalized Observability with Lie Derivatives and Decomposition), and it is implemented in a MATLAB toolbox which is available as open source software. The broad applicability of this approach facilitates the analysis of the increasingly complex models used in systems biology and other areas. PMID:27792726

LC/QTOF-MS fragmentation of N-nitrosodimethylamine precursors in drinking water supplies is predictable and aids their identification.

PubMed

Hanigan, David; Ferrer, Imma; Thurman, E Michael; Herckes, Pierre; Westerhoff, Paul

2017-02-05

N-Nitrosodimethylamine (NDMA) is carcinogenic in rodents and occurs in chloraminated drinking water and wastewater effluents. NDMA forms via reactions between chloramines and mostly unidentified, N-containing organic matter. We developed a mass spectrometry technique to identify NDMA precursors by analyzing 25 model compounds with LC/QTOF-MS. We searched isolates of 11 drinking water sources and 1 wastewater using a custom MATLAB ® program and extracted ion chromatograms for two fragmentation patterns that were specific to the model compounds. Once a diagnostic fragment was discovered, we conducted MS/MS during a subsequent injection to confirm the precursor ion. Using non-target searches and two diagnostic fragmentation patterns, we discovered 158 potential NDMA precursors. Of these, 16 were identified using accurate mass combined with fragment and retention time matches of analytical standards when available. Five of these sixteen NDMA precursors were previously unidentified in the literature, three of which were metabolites of pharmaceuticals. Except methadone, the newly identified precursors all had NDMA molar yields of less than 5%, indicating that NDMA formation could be additive from multiple compounds, each with low yield. We demonstrate that the method is applicable to other disinfection by-product precursors by predicting and verifying the fragmentation patterns for one nitrosodiethylamine precursor. Copyright © 2016. Published by Elsevier B.V.

Five New Millisecond Pulsars From A Radio Survey Of 14 Unidentified Fermi -Lat Gamma-Ray Sources

DOE PAGES

Kerr, M.; Camilo, F.; Johnson, T. J.; ...

2012-02-27

We have discovered five millisecond pulsars (MSPs) in a survey of 14 unidentified Fermi-LAT sources in the southern sky using the Parkes radio telescope. PSRs J0101–6422, J1514–4946, and J1902–5105 reside in binaries, while PSRs J1658–5324 and J1747–4036 are isolated. Using an ephemeris derived from timing observations of PSR J0101–6422 (P=2.57ms, DM=12 pc cm -3), we have detected γ-ray pulsations and measured its proper motion. Its γ-ray spectrum (a power law of Γ = 0.9 with a cutoff at 1.6GeV) and efficiency are typical of other MSPs, but its radio and γ-ray light curves challenge simple geometric models of emission. Themore » high success rate of this survey—enabled by selecting γ- ray sources based on their detailed spectral characteristics—and other similarly successful searches indicate that a substantial fraction of the local population of MSPs may soon be known.« less

FIVE NEW MILLISECOND PULSARS FROM A RADIO SURVEY OF 14 UNIDENTIFIED FERMI-LAT GAMMA-RAY SOURCES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kerr, M.; Camilo, F.; Johnson, T. J.

2012-03-20

We have discovered five millisecond pulsars (MSPs) in a survey of 14 unidentified Fermi Large Area Telescope sources in the southern sky using the Parkes radio telescope. PSRs J0101-6422, J1514-4946, and J1902-5105 reside in binaries, while PSRs J1658-5324 and J1747-4036 are isolated. Using an ephemeris derived from timing observations of PSR J0101-6422 (P = 2.57 ms, DM = 12 pc cm{sup -3}), we have detected {gamma}-ray pulsations and measured its proper motion. Its {gamma}-ray spectrum (a power law of {Gamma} = 0.9 with a cutoff at 1.6 GeV) and efficiency are typical of other MSPs, but its radio and {gamma}-raymore » light curves challenge simple geometric models of emission. The high success rate of this survey-enabled by selecting {gamma}-ray sources based on their detailed spectral characteristics-and other similarly successful searches indicate that a substantial fraction of the local population of MSPs may soon be known.« less

Comparison of fipronil sources in North Carolina surface water ...

EPA Pesticide Factsheets

Fipronil is a phenylpyrazole insecticide that is widely used in residential and agricultural settings to control ants, roaches, termites, and other pests. Fipronil and its transformation products have been found in a variety of environmental matrices, but the source[s] which makes the greatest contribution to fipronil in surface water has yet to be determined. A sampling effort designed to prioritize known fipronil inputs (golf courses, residential areas, biosolids application sites and wastewater facilities) was conducted in North Carolina to learn more about the origins of fipronil in surface water. High resolution mass spectrometry (HRMS) analysis indicated that fipronil and its known derivatives were routinely present in all samples, but concentrations were substantially elevated near wastewater treatment plant outfalls (range 10–500 ng/L combined), suggesting that they predominate as environmental sources. Corresponding recycled wastewater samples, which were treated with NaOCl for disinfection, showed disappearance of fipronil and all known degradates. HRMS and nuclear magnetic resonance (NMR) analysis techniques were used to determine that all fipronil-related compounds are oxidized to a previously unidentified fipronil sulfone chloramine species in recycled wastewater. The implications of the presence of a new fipronil-related compound in recycled wastewater need to be considered. Journal Article Highlights • The most important sources of fipronil in

The Faintest WISE Debris Disks: Enhanced Methods for Detection and Verification

NASA Astrophysics Data System (ADS)

Patel, Rahul I.; Metchev, Stanimir A.; Heinze, Aren; Trollo, Joseph

2017-02-01

In an earlier study, we reported nearly 100 previously unknown dusty debris disks around Hipparcos main-sequence stars within 75 pc by selecting stars with excesses in individual WISE colors. Here, we further scrutinize the Hipparcos 75 pc sample to (1) gain sensitivity to previously undetected, fainter mid-IR excesses and (2) remove spurious excesses contaminated by previously unidentified blended sources. We improve on our previous method by adopting a more accurate measure of the confidence threshold for excess detection and by adding an optimally weighted color average that incorporates all shorter-wavelength WISE photometry, rather than using only individual WISE colors. The latter is equivalent to spectral energy distribution fitting, but only over WISE bandpasses. In addition, we leverage the higher-resolution WISE images available through the unWISE.me image service to identify contaminated WISE excesses based on photocenter offsets among the W3- and W4-band images. Altogether, we identify 19 previously unreported candidate debris disks. Combined with the results from our earlier study, we have found a total of 107 new debris disks around 75 pc Hipparcos main-sequence stars using precisely calibrated WISE photometry. This expands the 75 pc debris disk sample by 22% around Hipparcos main-sequence stars and by 20% overall (including non-main-sequence and non-Hipparcos stars).

DOE Office of Scientific and Technical Information (OSTI.GOV)

Patel, Rahul I.; Metchev, Stanimir A.; Trollo, Joseph

In an earlier study, we reported nearly 100 previously unknown dusty debris disks around Hipparcos main-sequence stars within 75 pc by selecting stars with excesses in individual WISE colors. Here, we further scrutinize the Hipparcos  75 pc sample to (1) gain sensitivity to previously undetected, fainter mid-IR excesses and (2) remove spurious excesses contaminated by previously unidentified blended sources. We improve on our previous method by adopting a more accurate measure of the confidence threshold for excess detection and by adding an optimally weighted color average that incorporates all shorter-wavelength WISE photometry, rather than using only individual WISE colors. Themore » latter is equivalent to spectral energy distribution fitting, but only over WISE bandpasses. In addition, we leverage the higher-resolution WISE images available through the unWISE.me image service to identify contaminated WISE excesses based on photocenter offsets among the W 3- and W 4-band images. Altogether, we identify 19 previously unreported candidate debris disks. Combined with the results from our earlier study, we have found a total of 107 new debris disks around 75 pc Hipparcos main-sequence stars using precisely calibrated WISE photometry. This expands the 75 pc debris disk sample by 22% around Hipparcos main-sequence stars and by 20% overall (including non-main-sequence and non- Hipparcos stars).« less

Characterization of previously unidentified lunar pyroclastic deposits using Lunar Reconnaissance Orbiter Camera (LROC) data

USGS Publications Warehouse

Gustafson, J. Olaf; Bell, James F.; Gaddis, Lisa R.R.; Hawke, B. Ray Ray; Giguere, Thomas A.

2012-01-01

We used a Lunar Reconnaissance Orbiter Camera (LROC) global monochrome Wide-angle Camera (WAC) mosaic to conduct a survey of the Moon to search for previously unidentified pyroclastic deposits. Promising locations were examined in detail using LROC multispectral WAC mosaics, high-resolution LROC Narrow Angle Camera (NAC) images, and Clementine multispectral (ultraviolet-visible or UVVIS) data. Out of 47 potential deposits chosen for closer examination, 12 were selected as probable newly identified pyroclastic deposits. Potential pyroclastic deposits were generally found in settings similar to previously identified deposits, including areas within or near mare deposits adjacent to highlands, within floor-fractured craters, and along fissures in mare deposits. However, a significant new finding is the discovery of localized pyroclastic deposits within floor-fractured craters Anderson E and F on the lunar farside, isolated from other known similar deposits. Our search confirms that most major regional and localized low-albedo pyroclastic deposits have been identified on the Moon down to ~100 m/pix resolution, and that additional newly identified deposits are likely to be either isolated small deposits or additional portions of discontinuous, patchy deposits.

Novel contaminants identified in fish kills in the Red River watershed, 2011–2013

EPA Science Inventory

Provisional molecular weights and chemical formulas were assigned to four significant previously unidentified contaminants present during active fish kills in the Red River region of Oklahoma. The provisional identifications of these contaminants were determined using high-resolu...

The 2HWC HAWC Observatory Gamma-Ray Catalog

NASA Astrophysics Data System (ADS)

Abeysekara, A. U.; Albert, A.; Alfaro, R.; Alvarez, C.; Álvarez, J. D.; Arceo, R.; Arteaga-Velázquez, J. C.; Ayala Solares, H. A.; Barber, A. S.; Baughman, B.; Bautista-Elivar, N.; Becerra Gonzalez, J.; Becerril, A.; Belmont-Moreno, E.; BenZvi, S. Y.; Berley, D.; Bernal, A.; Braun, J.; Brisbois, C.; Caballero-Mora, K. S.; Capistrán, T.; Carramiñana, A.; Casanova, S.; Castillo, M.; Cotti, U.; Cotzomi, J.; Coutiño de León, S.; de la Fuente, E.; De León, C.; Diaz Hernandez, R.; Dingus, B. L.; DuVernois, M. A.; Díaz-Vélez, J. C.; Ellsworth, R. W.; Engel, K.; Fiorino, D. W.; Fraija, N.; García-González, J. A.; Garfias, F.; Gerhardt, M.; González Muñoz, A.; González, M. M.; Goodman, J. A.; Hampel-Arias, Z.; Harding, J. P.; Hernandez, S.; Hernandez-Almada, A.; Hinton, J.; Hui, C. M.; Hüntemeyer, P.; Iriarte, A.; Jardin-Blicq, A.; Joshi, V.; Kaufmann, S.; Kieda, D.; Lara, A.; Lauer, R. J.; Lee, W. H.; Lennarz, D.; León Vargas, H.; Linnemann, J. T.; Longinotti, A. L.; Raya, G. Luis; Luna-García, R.; López-Coto, R.; Malone, K.; Marinelli, S. S.; Martinez, O.; Martinez-Castellanos, I.; Martínez-Castro, J.; Martínez-Huerta, H.; Matthews, J. A.; Miranda-Romagnoli, P.; Moreno, E.; Mostafá, M.; Nellen, L.; Newbold, M.; Nisa, M. U.; Noriega-Papaqui, R.; Pelayo, R.; Pretz, J.; Pérez-Pérez, E. G.; Ren, Z.; Rho, C. D.; Rivière, C.; Rosa-González, D.; Rosenberg, M.; Ruiz-Velasco, E.; Salazar, H.; Salesa Greus, F.; Sandoval, A.; Schneider, M.; Schoorlemmer, H.; Sinnis, G.; Smith, A. J.; Springer, R. W.; Surajbali, P.; Taboada, I.; Tibolla, O.; Tollefson, K.; Torres, I.; Ukwatta, T. N.; Vianello, G.; Villaseñor, L.; Weisgarber, T.; Westerhoff, S.; Wisher, I. G.; Wood, J.; Yapici, T.; Younk, P. W.; Zepeda, A.; Zhou, H.

2017-07-01

We present the first catalog of TeV gamma-ray sources realized with data from the newly completed High Altitude Water Cherenkov Observatory (HAWC). It is the most sensitive wide field-of-view TeV telescope currently in operation, with a one-year survey sensitivity of ˜5%-10% of the flux of the Crab Nebula. With an instantaneous field of view >1.5 sr and >90% duty cycle, it continuously surveys and monitors the sky for gamma-ray energies between hundreds of GeV and tens of TeV. HAWC is located in Mexico, at a latitude of 19° N, and was completed in 2015 March. Here, we present the 2HWC catalog, which is the result of the first source search performed with the complete HAWC detector. Realized with 507 days of data, it represents the most sensitive TeV survey to date for such a large fraction of the sky. A total of 39 sources were detected, with an expected number of false detections of 0.5 due to background fluctuation. Out of these sources, 19 are new sources that are not associated with previously known TeV sources (association criteria: <0.°5 away). The source list, including the position measurement, spectrum measurement, and uncertainties, is reported, then each source is briefly discussed. Of the 2HWC associated sources, 10 are reported in TeVCat as PWN or SNR: 2 as blazars and the remaining eight as unidentified.

The 2HWC HAWC Observatory Gamma-Ray Catalog

DOE Office of Scientific and Technical Information (OSTI.GOV)

Abeysekara, A. U.; Barber, A. S.; Albert, A.

2017-07-01

We present the first catalog of TeV gamma-ray sources realized with data from the newly completed High Altitude Water Cherenkov Observatory (HAWC). It is the most sensitive wide field-of-view TeV telescope currently in operation, with a one-year survey sensitivity of ∼5%–10% of the flux of the Crab Nebula. With an instantaneous field of view >1.5 sr and >90% duty cycle, it continuously surveys and monitors the sky for gamma-ray energies between hundreds of GeV and tens of TeV. HAWC is located in Mexico, at a latitude of 19° N, and was completed in 2015 March. Here, we present the 2HWCmore » catalog, which is the result of the first source search performed with the complete HAWC detector. Realized with 507 days of data, it represents the most sensitive TeV survey to date for such a large fraction of the sky. A total of 39 sources were detected, with an expected number of false detections of 0.5 due to background fluctuation. Out of these sources, 19 are new sources that are not associated with previously known TeV sources (association criteria: <0.°5 away). The source list, including the position measurement, spectrum measurement, and uncertainties, is reported, then each source is briefly discussed. Of the 2HWC associated sources, 10 are reported in TeVCat as PWN or SNR: 2 as blazars and the remaining eight as unidentified.« less

Carotenoid diagenesis in recent marine sediments. I. The Peru continental shelf (15/sup 0/S, 75/sup 0/W)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Repeta, D.J.; Gagosian, R.B.

1987-04-01

The authors report here the distribution of carotenoids in Peru marine surface sediments, including partial identification of 37 pigments, 33 of which have not been previously reported to occur in marine sediments. Their analysis demonstrates that zooplanktonic crustacea, diatoms, dinoflagellates, cryptomonads, purple nonsulfur photosynthetic bacteria, and unidentified species of photosynthetic bacteria are contributors to sedimentary organic matter. Fucoxanthin, fucoxanthinol, diadinoxanthin, peridinin and peridininol, the principal carotenoids of diatoms and dinoflagellates observed in sediment traps, are nearly absent from their sample, even though these phytoplankton are the primary source of organic matter. They attribute this to the presence of 5,6 epoxidesmore » in these pigments, a feature which causes rapid cleavage of the polyene and fragmentation to low molecular weight compounds.« less

Unveiling the nature of INTEGRAL objects through optical spectroscopy. VI. A multi-observatory identification campaign

NASA Astrophysics Data System (ADS)

Masetti, N.; Mason, E.; Morelli, L.; Cellone, S. A.; McBride, V. A.; Palazzi, E.; Bassani, L.; Bazzano, A.; Bird, A. J.; Charles, P. A.; Dean, A. J.; Galaz, G.; Gehrels, N.; Landi, R.; Malizia, A.; Minniti, D.; Panessa, F.; Romero, G. E.; Stephen, J. B.; Ubertini, P.; Walter, R.

2008-04-01

Using 8 telescopes in the northern and southern hemispheres, plus archival data from two on-line sky surveys, we performed a systematic optical spectroscopic study of 39 putative counterparts of unidentified or poorly studied INTEGRAL sources in order to determine or at least better assess their nature. This was implemented within the framework of our campaign to reveal the nature of newly-discovered and/or unidentified sources detected by INTEGRAL. Our results show that 29 of these objects are active galactic nuclei (13 of which are of Seyfert 1 type, 15 are Seyfert 2 galaxies and one is possibly a BL Lac object) with redshifts between 0.011 and 0.316, 7 are X-ray binaries (5 with high-mass companions and 2 with low-mass secondaries), one is a magnetic cataclysmic variable, one is a symbiotic star and one is possibly an active star. Thus, the large majority (74%) of the identifications in this sample belongs to the AGN class. When possible, the main physical parameters for these hard X-ray sources were also computed using the multiwavelength information available in the literature. These identifications further underscore the importance of INTEGRAL in studying the hard X-ray spectra of all classes of X-ray emitting objects, and the effectiveness of a strategy of multi-catalogue cross-correlation plus optical spectroscopy to securely pinpoint the actual nature of still unidentified hard X-ray sources. Based on observations collected at the following observatories: ESO (La Silla, Chile), partly under program 079.A-0171(A); Astronomical Observatory of Bologna in Loiano (Italy); Astronomical Observatory of Asiago (Italy); Cerro Tololo Interamerican Observatory (Chile); Complejo Astronómico El Leoncito (San Juan, Argentina); South African Astronomical Observatory (Sutherland, South Africa); Observatorio del Roque de los Muchachos of the Instituto de Astrofísica de Canarias (Canary Islands, Spain); Anglo-Australian Observatory (Siding Spring, Australia); Apache Point Observatory (New Mexico, USA).

Magnetic biomonitoring by moss bags for industry-derived air pollution in SW Finland

NASA Astrophysics Data System (ADS)

Salo, Hanna; Mäkinen, Joni

2014-11-01

We provide the first detailed case study using Sphagnum papillosum moss bags for active magnetic monitoring of airborne industrial pollution in order to evaluate the actual role of various emission sources and the competence of current environmental protection actions relative to the air quality. The origin and spatial spreading of particulate matter (PM) based on magnetic, chemical, and SEM-EDX analyses was studied around the Industrial Park in Harjavalta, SW Finland. The data was collected during two 6-month sampling periods along 8 km transects in 2010-2011. The results support our hypothesis that the main emission source of PM is not the Cu-Ni smelter's pipe as presumed in previous chemical monitorings. We argue that the hot spot area within the severe impact pollution zone is related to slag processing and/or other unidentified industrial activity. At short distances various dust-providing sources outweigh the fly-ash load from the Cu-Ni smelter's pipe. Active magnetic monitoring by moss bags will help in planning environmental actions as well as in improvement of health conditions for industrial staff and town residents living next to the Industrial Park.

VizieR Online Data Catalog: Einstein EMSS Survey (Gioia+ 1990, Stocke+ 1991)

NASA Astrophysics Data System (ADS)

Gioia, I. M.; Maccacaro, T.; Schild, R. E.; Wolter, A.

1995-07-01

The Einstein Extended Medium Sensitivity Survey (EMSS) consists of 835 serendipitous X-ray sources detected at or above 4 times the rms level in 1435 IPC fields with their centers located away from the galactic plane. Their limiting sensitivities range from ~5*10-14 to to ~ 3*10-12 erg.cm-2.s-1 in the 0.3-3.5keV band. A total area of 778 square degrees of the high galactic latitude sky (|b|>20) has been covered. The analysis has been performed using data from the Rev 1 processing system at the CfA. The resulting EMSS catalog is a flux-limited and homogeneous sample of astronomical objects that can be used for statistical studies. Here we present the table listing all the sources taken from the publication referenced below and the optical identifications. At present over 96% of the 835 X-ray sources have been successfully identified in the following proportions: active galactic nuclei (QSO's, quasars and Seyfert), 51.1%; BL Lacertae objects, 4.3%; clusters of galaxies, 12.2%; normal galaxies, 2.1%; cooling flow galaxies, 0.6%; Galactic stars 25.8%; and unidentified, 3.9%. Most of the individual optical counterparts are previously unknown objects and so constitute large statistical samples independent of previously selection methods. The contents of the table is described below. The sky coverage computed for a specific assumed source spectrum is also given under "Additional Information" below. For further details please see the published articles: Gioia et al. 1990, Stocke et al. 1991. (1 data file).

Repeat immigration: A previously unobserved source of heterogeneity?

PubMed

Aradhya, Siddartha; Scott, Kirk; Smith, Christopher D

2017-07-01

Register data allow for nuanced analyses of heterogeneities between sub-groups which are not observable in other data sources. One heterogeneity for which register data is particularly useful is in identifying unique migration histories of immigrant populations, a group of interest across disciplines. Years since migration is a commonly used measure of integration in studies seeking to understand the outcomes of immigrants. This study constructs detailed migration histories to test whether misclassified migrations may mask important heterogeneities. In doing so, we identify a previously understudied group of migrants called repeat immigrants, and show that they differ systematically from permanent immigrants. In addition, we quantify the degree to which migration information is misreported in the registers. The analysis is carried out in two steps. First, we estimate income trajectories for repeat immigrants and permanent immigrants to understand the degree to which they differ. Second, we test data validity by cross-referencing migration information with changes in income to determine whether there are inconsistencies indicating misreporting. From the first part of the analysis, the results indicate that repeat immigrants systematically differ from permanent immigrants in terms of income trajectories. Furthermore, income trajectories differ based on the way in which years since migration is calculated. The second part of the analysis suggests that misreported migration events, while present, are negligible. Repeat immigrants differ in terms of income trajectories, and may differ in terms of other outcomes as well. Furthermore, this study underlines that Swedish registers provide a reliable data source to analyze groups which are unidentifiable in other data sources.

Detection of oxygen isotopic anomaly in terrestrial atmospheric carbonates and its implications to Mars.

PubMed

Shaheen, R; Abramian, A; Horn, J; Dominguez, G; Sullivan, R; Thiemens, Mark H

2010-11-23

The debate of life on Mars centers around the source of the globular, micrometer-sized mineral carbonates in the ALH84001 meteorite; consequently, the identification of Martian processes that form carbonates is critical. This paper reports a previously undescribed carbonate formation process that occurs on Earth and, likely, on Mars. We identified micrometer-sized carbonates in terrestrial aerosols that possess excess (17)O (0.4-3.9‰). The unique O-isotopic composition mechanistically describes the atmospheric heterogeneous chemical reaction on aerosol surfaces. Concomitant laboratory experiments define the transfer of ozone isotopic anomaly to carbonates via hydrogen peroxide formation when O(3) reacts with surface adsorbed water. This previously unidentified chemical reaction scenario provides an explanation for production of the isotopically anomalous carbonates found in the SNC (shergottites, nakhlaites, chassignites) Martian meteorites and terrestrial atmospheric carbonates. The anomalous hydrogen peroxide formed on the aerosol surfaces may transfer its O-isotopic signature to the water reservoir, thus producing mass independently fractionated secondary mineral evaporites. The formation of peroxide via heterogeneous chemistry on aerosol surfaces also reveals a previously undescribed oxidative process of utility in understanding ozone and oxygen chemistry, both on Mars and Earth.

Detection of oxygen isotopic anomaly in terrestrial atmospheric carbonates and its implications to Mars

PubMed Central

Shaheen, R.; Abramian, A.; Horn, J.; Dominguez, G.; Sullivan, R.; Thiemens, Mark H.

2010-01-01

The debate of life on Mars centers around the source of the globular, micrometer-sized mineral carbonates in the ALH84001 meteorite; consequently, the identification of Martian processes that form carbonates is critical. This paper reports a previously undescribed carbonate formation process that occurs on Earth and, likely, on Mars. We identified micrometer-sized carbonates in terrestrial aerosols that possess excess 17O (0.4–3.9‰). The unique O-isotopic composition mechanistically describes the atmospheric heterogeneous chemical reaction on aerosol surfaces. Concomitant laboratory experiments define the transfer of ozone isotopic anomaly to carbonates via hydrogen peroxide formation when O3 reacts with surface adsorbed water. This previously unidentified chemical reaction scenario provides an explanation for production of the isotopically anomalous carbonates found in the SNC (shergottites, nakhlaites, chassignites) Martian meteorites and terrestrial atmospheric carbonates. The anomalous hydrogen peroxide formed on the aerosol surfaces may transfer its O-isotopic signature to the water reservoir, thus producing mass independently fractionated secondary mineral evaporites. The formation of peroxide via heterogeneous chemistry on aerosol surfaces also reveals a previously undescribed oxidative process of utility in understanding ozone and oxygen chemistry, both on Mars and Earth. PMID:21059939

Sentinel Lymph Node Occult Metastases Have Minimal Survival Effect in Some Breast Cancer Patients

Cancer.gov

Detailed examination of sentinel lymph node tissue from breast cancer patients revealed previously unidentified metastases in about 16% of the samples, but the difference in 5-year survival between patients with and without these metastases was very small

Unidentified emission features in the R Coronae Borealis star V854 Centauri

NASA Astrophysics Data System (ADS)

Oostrum, L. C.; Ochsendorf, B. B.; Kaper, L.; Tielens, A. G. G. M.

2018-02-01

During its 2012 decline, the R Coronae Borealis star (RCB) V854 Cen was spectroscopically monitored with X-shooter on the ESO Very Large Telescope. The obscured optical and near-infrared spectrum exhibits many narrow and several broad emission features, as previously observed. The envelope is spatially resolved along the slit and allows for a detailed study of the circumstellar material. In this Letter, we report on the properties of a number of unidentified visual emission features (UFs), including the detection of a new feature at 8692 Å. These UFs have been observed in the Red Rectangle (RR), but their chemical and physical nature is still a mystery. The previously known UFs behave similarly in the RR and in V854 Cen, but are not detected in six other observed RCBs. Some hydrogen might be required for the formation of their carrier(s). The λ8692 UF is present in all RCBs. Its carrier is likely of a carbonaceous molecular nature, presumably different from that of the other UFs.

Genetic and phylogenetic analysis of a novel parvovirus isolated from chickens in Guangxi, China.

PubMed

Feng, Bin; Xie, Zhixun; Deng, Xianwen; Xie, Liji; Xie, Zhiqin; Huang, Li; Fan, Qin; Luo, Sisi; Huang, Jiaoling; Zhang, Yanfang; Zeng, Tingting; Wang, Sheng; Wang, Leyi

2016-11-01

A previously unidentified chicken parvovirus (ChPV) strain, associated with runting-stunting syndrome (RSS), is now endemic among chickens in China. To explore the genetic diversity of ChPV strains, we determined the first complete genome sequence of a novel ChPV isolate (GX-CH-PV-7) identified in chickens in Guang Xi, China, and showed moderate genome sequence similarity to reference strains. Analysis showed that the viral genome sequence is 86.4 %-93.9 % identical to those of other ChPVs. Genetic and phylogenetic analyses showed that this newly emergent GX-CH-PV-7 is closely related to Gallus gallus enteric parvovirus isolate ChPV 798 from the USA, indicating that they may share a common ancestor. The complete DNA sequence is 4612 bp long with an A+T content of 56.66 %. We determined the first complete genome sequence of a previously unidentified ChPV strain to elucidate its origin and evolutionary status.

VizieR Online Data Catalog: New gamma-ray blazar candidates in the 3PBC (Maselli+, 2013)

NASA Astrophysics Data System (ADS)

Maselli, A.; Massaro, F.; Cusumano, G.; D'Abrusco, R.; La Parola, V.; Paggi, A.; Segreto, A.; Smith, H. A.; Tosti, G.

2013-06-01

We searched for γ-ray blazar candidates among the 382 unidentified hard X-ray sources of the third Palermo BAT Catalog (3PBC) obtained from the analysis of 66 months of Swift Burst Alert Telescope (BAT) survey data and listing 1586 sources. We adopted a recently developed association method based on the peculiar infrared colors that characterize the γ-ray blazars included in the second catalog of active galactic nuclei detected by the Fermi Large Area Telescope. We used this method exploiting the data of the all-sky survey performed by the Wide-field Infrared Survey Explorer (WISE) to establish correspondences between unidentified 3PBC sources and WISE γ-ray blazar candidates located within the BAT positional uncertainty region at a 99% confidence level. We obtained a preliminary list of candidates for which we analyzed all the available data in the Swift archive to complement the information in the literature and in the radio, infrared, and optical catalogs with the information on their optical-UV and soft X-ray emission. Requiring the presence of radio and soft X-ray counterparts consistent with the infrared positions of the selected WISE sources, as well as a blazar-like radio morphology, we finally obtained a list of 24 γ-ray blazar candidates. (2 data files).

Searching for New γ-Ray Blazar Candidates in the Third Palermo BAT Hard X-Ray Catalog with WISE

NASA Astrophysics Data System (ADS)

Maselli, A.; Massaro, F.; Cusumano, G.; D'Abrusco, R.; La Parola, V.; Paggi, A.; Segreto, A.; Smith, Howard A.; Tosti, G.

2013-06-01

We searched for γ-ray blazar candidates among the 382 unidentified hard X-ray sources of the third Palermo BAT Catalog (3PBC) obtained from the analysis of 66 months of Swift Burst Alert Telescope (BAT) survey data and listing 1586 sources. We adopted a recently developed association method based on the peculiar infrared colors that characterize the γ-ray blazars included in the second catalog of active galactic nuclei detected by the Fermi Large Area Telescope. We used this method exploiting the data of the all-sky survey performed by the Wide-field Infrared Survey Explorer (WISE) to establish correspondences between unidentified 3PBC sources and WISE γ-ray blazar candidates located within the BAT positional uncertainty region at a 99% confidence level. We obtained a preliminary list of candidates for which we analyzed all the available data in the Swift archive to complement the information in the literature and in the radio, infrared, and optical catalogs with the information on their optical-UV and soft X-ray emission. Requiring the presence of radio and soft X-ray counterparts consistent with the infrared positions of the selected WISE sources, as well as a blazar-like radio morphology, we finally obtained a list of 24 γ-ray blazar candidates.

The Gould’s Belt Very Large Array Survey. V. The Perseus Region

NASA Astrophysics Data System (ADS)

Pech, Gerardo; Loinard, Laurent; Dzib, Sergio A.; Mioduszewski, Amy J.; Rodríguez, Luis F.; Ortiz-León, Gisela N.; Rivera, Juana L.; Torres, Rosa M.; Boden, Andrew F.; Hartman, Lee; Kounkel, Marina A.; Evans, Neal J., II; Briceño, Cesar; Tobin, John; Zapata, Luis A.

2016-02-01

We present multiepoch, large-scale (˜2000 arcmin2), fairly deep (˜16 μJy), high-resolution (˜1″) radio observations of the Perseus star-forming complex obtained with the Karl G. Jansky Very Large Array at frequencies of 4.5 and 7.5 GHz. These observations were mainly focused on the clouds NGC 1333 and IC 348, although we also observed several fields in other parts of the Perseus complex. We detect a total of 206 sources, 42 of which are associated with young stellar objects (YSOs). The radio properties of about 60% of the YSOs are compatible with a nonthermal radio emission origin. Based on our sample, we find a fairly clear relation between the prevalence of nonthermal radio emission and evolutionary status of the YSOs. By comparing our results with previously reported X-ray observations, we show that YSOs in Perseus follow a Güdel-Benz relation with κ = 0.03, consistent with other regions of star formation. We argue that most of the sources detected in our observations but not associated with known YSOs are extragalactic, but provide a list of 20 unidentified radio sources whose radio properties are consistent with being YSO candidates. Finally, we also detect five sources with extended emission features that can clearly be associated with radio galaxies.

Comparison of fipronil sources in North Carolina surface water and identification of a novel fipronil transformation product in recycled wastewater.

PubMed

McMahen, Rebecca L; Strynar, Mark J; McMillan, Larry; DeRose, Eugene; Lindstrom, Andrew B

2016-11-01

Fipronil is a phenylpyrazole insecticide that is widely used in residential and agricultural settings to control ants, roaches, termites, and other pests. Fipronil and its transformation products have been found in a variety of environmental matrices, but the source[s] which makes the greatest contribution to fipronil in surface water has yet to be determined. A sampling effort designed to prioritize known fipronil inputs (golf courses, residential areas, biosolids application sites and wastewater facilities) was conducted in North Carolina to learn more about the origins of fipronil in surface water. High resolution mass spectrometry (HRMS) analysis indicated that fipronil and its known derivatives were routinely present in all samples, but concentrations were substantially elevated near wastewater treatment plant outfalls (range 10-500ng/L combined), suggesting that they predominate as environmental sources. Corresponding recycled wastewater samples, which were treated with NaOCl for disinfection, showed disappearance of fipronil and all known degradates. HRMS and nuclear magnetic resonance (NMR) analysis techniques were used to determine that all fipronil-related compounds are oxidized to a previously unidentified fipronil sulfone chloramine species in recycled wastewater. The implications of the presence of a new fipronil-related compound in recycled wastewater need to be considered. Published by Elsevier B.V.

A Multi-Wavelength Search for a Counterpart of the Unidentified Gamma-ray source 3EG J2020+4017 (2CG078+2)

NASA Technical Reports Server (NTRS)

Becker, Werner; Weisskopf, Martin C.; Arzoumanian, Zaven; Lorimer, Duncan; Camilo, Fernando; Elsner, Ronald F.; Kanbach, Gottfried; Reimer, Olaf; Swartz, Douglas A.; Tennant, Allyn F.

2004-01-01

In search of the counterpart to the brightest unidentified gamma-ray source 3EG J2020+4017 (2CG078+2) we report on new X-ray and radio observations of the gamma-Cygni field with the Chandra X-ray Observatory and with the Green Bank Telescope (GBT). We also report on reanalysis of archival ROSAT data. With Chandra it became possible for the first time to measure the position of the putative gamma-ray counterpart RX J2020.2+4026 with sub-arcsec accuracy and to deduce its X-ray spectral characteristics. These observations demonstrate that RX J2020.2+4026 is associated with a K field star and therefore is unlikely to be the counterpart of the bright gamma-ray source 2CG078+2 in the SNR G78.2+2.1 as had been previously suggested. The Chandra observation detected 37 additional X-ray sources which were correlated with catalogs of optical and infrared data. Subsequent GBT radio observations covered the complete 99% EGRET likelihood contour of 3EG J2020+4017 with a sensitivity limit of L(sub 820) approx. 0.1 mJy kpc(exp 2) which is lower than most of the recent deep radio search limits. If there is a pulsar operating in 3EG J2020+4017, this sensitivity limit suggests that the pulsar either does not produce significant amounts of radio emission or that its geometry is such that the radio beam does not intersect with the line of sight. Finally, reanalysis of archival ROSAT data leads to a flux upper limit of f(sub x)(0.1-2.4 keV) < 1.8 x 10(exp -13) erg/s/sq cm for a putative point-like X-ray source located within the 68% confidence contour of 3EG J2020+4017. Adopting the SNR age of 5400 yrs and assuming a spin-down to X-ray energy conversion factor of 10(exp -3) this upper limit constraints the parameters of a putative neutron star as a counterpart for 3EG J2020+4017 to be P > or approx. 160/(d/1.5 kpc) ms, P > or approx. 5 x 10(exp -13)/(d/1.5kpc) s s1 and B > or approx. 9 x 10(exp 12)/(d/1.5 kpc) G.

An AGN Identification for 3EG J2006-2321

NASA Technical Reports Server (NTRS)

Wallace, P. M.; Halpern, J. P.; Magalhaes, A. M.; Thompson, D. J.; White, Nicholas E. (Technical Monitor)

2001-01-01

We present a multiwavelength analysis of the high-energy gamma-ray source 3EG J2006-2321 (l = 18 deg.82, b = -26 deg.26). The flux of this source above 100 MeV is shown to be variable on time scales of days and months. Optical observations and careful examination of archived radio data indicate that its most probable identification is with PMN J2005-2310, a flat-spectrum radio quasar with a 5GHz flux density of 260 mJy. Study of the V = 19.3 optical counterpart indicates a redshift of 0.833 and variable linear polarization. No X-ray source has been detected near the position of PMN J2005-2310, but an X-ray upper limit is derived from ROSAT data. This upper limit provides for a spectral energy distribution with global characteristics similar to those of known gamma-ray blazars. Taken together, these data indicate that 3EG J2006-2321, listed as unidentified in the 3rd EGRET Catalog, is a member of the blazar class of AGN. The 5-GHz radio flux density of this blazar is the lowest of the 68 EGRET-detected AGN. The fact that EGRET has detected such a source has implications for unidentified EGRET sources, particularly those at high latitudes (absolute value of b greater than 30 deg), many of which may be blazars.

INTEGRATED TECHNOLOGY-BASED TOXICOLOGY STUDIES ON DRINKING WATER DISINFECTION BYPRODUCTS (DBPS)

EPA Science Inventory

DBPs are formed by reactions of chemical disinfectants with natural organic matter in the source water. Although more than 300 DBPs are known, many remain unidentified; for chlorination, known DBPs account for ~50% of the mass of total organic halide. Toxicological evaluation o...

Detection of the aromatic molecule benzonitrile (c-C6H5CN) in the interstellar medium

NASA Astrophysics Data System (ADS)

McGuire, Brett A.; Burkhardt, Andrew M.; Kalenskii, Sergei; Shingledecker, Christopher N.; Remijan, Anthony J.; Herbst, Eric; McCarthy, Michael C.

2018-01-01

Polycyclic aromatic hydrocarbons and polycyclic aromatic nitrogen heterocycles are thought to be widespread throughout the universe, because these classes of molecules are probably responsible for the unidentified infrared bands, a set of emission features seen in numerous Galactic and extragalactic sources. Despite their expected ubiquity, astronomical identification of specific aromatic molecules has proven elusive. We present the discovery of benzonitrile (c-C6H5CN), one of the simplest nitrogen-bearing aromatic molecules, in the interstellar medium. We observed hyperfine-resolved transitions of benzonitrile in emission from the molecular cloud TMC-1. Simple aromatic molecules such as benzonitrile may be precursors for polycyclic aromatic hydrocarbon formation, providing a chemical link to the carriers of the unidentified infrared bands.

Seeing the Invisible: Embedding Tests in Code That Cannot be Modified

NASA Technical Reports Server (NTRS)

O'Malley, Owen; Mansouri-Samani, Masoud; Mehlitz, Peter; Penix, John

2005-01-01

The difficulty of characterizing and observing valid software behavior during testing can be very difficult in flight systems. To address this issue, we evaluated several approaches to increasing test observability on the Shuttle Abort Flight Management (SAFM) system. To increase test observability, we added probes into the running system to evaluate the internal state and analyze test data. To minimize the impact of the instrumentation and reduce manual effort, we used Aspect-Oriented Programming (AOP) tools to instrument the source code. We developed and elicited a spectrum of properties, from generic to application specific properties, to be monitored via the instrumentation. To evaluate additional approaches, SAFM was ported to Linux, enabling the use of gcov for measuring test coverage, Valgrind for looking for memory usage errors, and libraries for finding non-normal floating point values. An in-house C++ source code scanning tool was also used to identify violations of SAFM coding standards, and other potentially problematic C++ constructs. Using these approaches with the existing test data sets, we were able to verify several important properties, confirm several problems and identify some previously unidentified issues.

Variable gamma-ray sky at 1 GeV

NASA Astrophysics Data System (ADS)

Pshirkov, M. S.; Rubtsov, G. I.

2013-01-01

We search for the long-term variability of the gamma-ray sky in the energy range E > 1 GeV with 168 weeks of the gamma-ray telescope Fermi-LAT data. We perform a full sky blind search for regions with variable flux looking for deviations from uniformity. We bin the sky into 12288 pixels using the HEALPix package and use the Kolmogorov-Smirnov test to compare weekly photon counts in each pixel with the constant flux hypothesis. The weekly exposure of Fermi-LAT for each pixel is calculated with the Fermi-LAT tools. We consider flux variations in a pixel significant if the statistical probability of uniformity is less than 4 × 10-6, which corresponds to 0.05 false detections in the whole set. We identified 117 variable sources, 27 of which have not been reported variable before. The sources with previously unidentified variability contain 25 active galactic nuclei (AGN) belonging to the blazar class (11 BL Lacs and 14 FSRQs), one AGN of an uncertain type, and one pulsar PSR J0633+1746 (Geminga).

Chemoecological Screening Reveals High Bioactivity in Diverse Culturable Portuguese Marine Cyanobacteria

PubMed Central

Leão, Pedro N.; Ramos, Vitor; Gonçalves, Patrício B.; Viana, Flávia; Lage, Olga M.; Gerwick, William H.; Vasconcelos, Vitor M.

2013-01-01

Marine cyanobacteria, notably those from tropical regions, are a rich source of bioactive secondary metabolites. Tropical marine cyanobacteria often grow to high densities in the environment, allowing direct isolation of many secondary metabolites from field-collected material. However, in temperate environments culturing is usually required to produce enough biomass for investigations of their chemical constituents. In this work, we cultured a selection of novel and diverse cyanobacteria isolated from the Portuguese coast, and tested their organic extracts in a series of ecologically-relevant bioassays. The majority of the extracts showed activity in at least one of the bioassays, all of which were run in very small scale. Phylogenetically related isolates exhibited different activity profiles, highlighting the value of microdiversity for bioprospection studies. Furthermore, LC-MS analyses of selected active extracts suggested the presence of previously unidentified secondary metabolites. Overall, the screening strategy employed here, in which previously untapped cyanobacterial diversity was combined with multiple bioassays, proved to be a successful strategy and allowed the selection of several strains for further investigations based on their bioactivity profiles. PMID:23609580

Air shower detectors in gamma-ray astronomy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sinnis, Gus

2008-01-01

Extensive air shower (EAS) arrays directly detect the particles in an EAS that reach the observation altitude. This detection technique effectively makes air shower arrays synoptic telescopes -- they are capable of simultaneously and continuously viewing the entire overhead sky. Typical air shower detectors have an effective field-of-view of 2 sr and operate nearly 100% of the time. These two characteristics make them ideal instruments for studying the highest energy gamma rays, extended sources and transient phenomena. Until recently air shower arrays have had insufficient sensitivity to detect gamma-ray sources. Over the past decade, the situation has changed markedly. Milagro,more » in the US, and the Tibet AS{gamma} array in Tibet, have detected very-high-energy gamma-ray emission from the Crab Nebula and the active galaxy Markarian 421 (both previously known sources). Milagro has discovered TeV diffuse emission from the Milky Way, three unidentified sources of TeV gamma rays, and several candidate sources of TeV gamma rays. Given these successes and the suite of existing and planned instruments in the GeV and TeV regime (AGILE, GLAST, HESS, VERITAS, CTA, AGIS and IceCube) there are strong reasons for pursuing a next generation of EAS detectors. In conjunction with these other instruments the next generation of EAS instruments could answer long-standing problems in astrophysics.« less

Common Knowledge, Learning, and Citation Practices in University Writing

ERIC Educational Resources Information Center

Shi, Ling

2011-01-01

The present study is based on interviews of students (n = 48) and instructors (n = 27) from various disciplines in a North American research university and explores participants' comments on examples of some students' unacknowledged texts appropriated and drawn from published sources, classroom learning, or unidentified prior reading. Although…

Commentary: What the Press Can Do to Meet Public Expectations.

ERIC Educational Resources Information Center

Martin, Harold E.

1980-01-01

Discusses trends and concerns in news reporting and news writing, including the accuracy of investigative reporting, the increased use of news "leaks" and unidentified sources, and the need to orient newspaper content toward real people with real interests instead of writing for an "average" reader. (RL)

HESS J1943+213: A candidate extreme BL Lacertae object

DOE PAGES

Abramowski, A.; Acero, F.; Aharonian, F.; ...

2011-03-30

In this paper, we report on a newly detected point-like source, HESS J1943+213. This source coincides with an unidentified hard X-ray source IGR J19443+2117, which was proposed to have radio and infrared counterparts. Here, we combine new H.E.S.S., Fermi/LAT and Nançay Radio Telescope observations with pre-existing non-simultaneous multi-wavelength observations of IGR J19443+2117 and discuss the likely source associations as well as the interpretation as an active galactic nucleus, a gamma-ray binary or a pulsar wind nebula.

Profiling of Glucosinolates and Flavonoids in Rorippa indica (Linn.) Hiern. (Cruciferae) by UHPLC-PDA-ESI/HRMSn

PubMed Central

2015-01-01

An UHPLC-PDA-ESI/HRMSn profiling method was used to identify the glucosinolates and flavonoids of Rorippa indica (Cruciferae), a wild vegetable and Chinese herb used to treat cough, diarrhea, and rheumatoid arthritis. Thirty-three glucosinolates, more than 40 flavonol glycosides, and 18 other phenolic and common organic compounds were identified. The glucosinolates and polyphenols were separated by UHPLC. High-resolution deprotonated molecules provided high accuracy mass values that were used to determine formulas and provide putative identification of the glucosinolates and flavonoids. The fragments from multistage mass spectrometry were used to elucidate the structures. The concentrations of the main components were based on UV peak areas and molar relative response factors with a single calibration standard. This study found this plant to be a rich source for glucosinolates, containing 24 new glucosinolates, including 14 glucosylated glucosinolates that were previously unidentified. PMID:24893216

Isolation and identification of chitin from heavy mineralized skeleton of Suberea clavata (Verongida: Demospongiae: Porifera) marine demosponge.

PubMed

Ehrlich, Hermann; Bazhenov, Vasilii V; Debitus, Cecile; de Voogd, Nicole; Galli, Roberta; Tsurkan, Mikhail V; Wysokowski, Marcin; Meissner, Heike; Bulut, Esra; Kaya, Murat; Jesionowski, Teofil

2017-11-01

Since the discovery of chitin in skeletal structures of sponges (Porifera) in 2007, studies on search of novel species which possess this structural aminopolysaccharide continue up today. The most potential source of chitin is suggested to be localized in the four families of sponges related to the order Verongida (Demospongiae) which nevertheless require further clarification. Here, we report for the first time the isolation and identification of α-chitin from the Suberea clavata demosponge (Aplysinidae: Verongida). Raman spectroscopy, Calcofluor White staining, chitinase test and ESI-MS techniques were used to identify chitin. We suggest that the presence of chitin within fibrous skeletons of diverse species of Verongida order, and, especially in all species of the Aplysinidae family, may be useful for the identification of novel, previously unidentified marine demosponges. Copyright © 2017 Elsevier B.V. All rights reserved.

Time-resolved energy transduction in a quantum capacitor

PubMed Central

Jung, Woojin; Cho, Doohee; Kim, Min-Kook; Choi, Hyoung Joon; Lyo, In-Whan

2011-01-01

The capability to deposit charge and energy quantum-by-quantum into a specific atomic site could lead to many previously unidentified applications. Here we report on the quantum capacitor formed by a strongly localized field possessing such capability. We investigated the charging dynamics of such a capacitor by using the unique scanning tunneling microscopy that combines nanosecond temporal and subangstrom spatial resolutions, and by using Si(001) as the electrode as well as the detector for excitations produced by the charging transitions. We show that sudden switching of a localized field induces a transiently empty quantum dot at the surface and that the dot acts as a tunable excitation source with subangstrom site selectivity. The timescale in the deexcitation of the dot suggests the formation of long-lived, excited states. Our study illustrates that a quantum capacitor has serious implications not only for the bottom-up nanotechnology but also for future switching devices. PMID:21817067

A New Supernova Remnant Coincident with the Slow X-Ray Pulsar AX J1845-0258.

PubMed

Gaensler; Gotthelf; Vasisht

1999-11-20

We report on Very Large Array observations in the direction of the recently discovered slow X-ray pulsar AX J1845-0258. In the resulting images, we find a 5&arcmin; shell of radio emission; the shell is linearly polarized with a nonthermal spectral index. We classify this source as a previously unidentified, young (<8000 yr) supernova remnant (SNR), G29.6+0.1, which we propose is physically associated with AX J1845-0258. The young age of G29.6+0.1 is then consistent with the interpretation that anomalous X-ray pulsars (AXPs) are isolated, highly magnetized neutron stars ("magnetars"). Three of the six known AXPs can now be associated with SNRs; we conclude that AXPs are young ( less, similar10,000 yr) objects and that they are produced in at least 5% of core-collapse supernovae.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Massaro, F.; D’Abrusco, R.; Paggi, A.

The Fermi-Large Area Telescope (LAT) First Source Catalog (1FGL) was released in 2010 February and the Fermi-LAT 2-Year Source Catalog (2FGL) appeared in 2012 April, based on data from 24 months of operation. Since they were released, many follow up observations of unidentified γ-ray sources have been performed and new procedures for associating γ-ray sources with potential counterparts at other wavelengths have been developed. Here we review and characterize all of the associations as published in the 1FGL and 2FGL catalogs on the basis of multifrequency archival observations. In particular, we located 177 spectra for the low-energy counterparts that weremore » not listed in the previous Fermi catalogs, and in addition we present new spectroscopic observations of eight γ-ray blazar candidates. Based on our investigations, we introduce a new counterpart category of “candidate associations” and propose a refined classification for the candidate low-energy counterparts of the Fermi sources. We compare the 1FGL-assigned counterparts with those listed in 2FGL to determine which unassociated sources became associated in later releases of the Fermi catalogs. We also search for potential counterparts to all of the remaining unassociated Fermi sources. Finally, we prepare a refined and merged list of all of the associations of 1FGL plus 2FGL that includes 2219 unique Fermi objects. This is the most comprehensive and systematic study of all the associations collected for the γ-ray sources available to date. We conclude that 80% of the Fermi sources have at least one known plausible γ-ray emitter within their positional uncertainty regions.« less

2-45 Micron Infrared Spectroscopy of Carbon-Rich Proto-Planetary Nebulae

NASA Technical Reports Server (NTRS)

Hrivnak, Bruce J.; Volk, Kevin; Kwok, Sun

2000-01-01

Infrared Space Observatory (ISO) 2-45 micron observations of seven proto-planetary nebulae (PPNs) and two other carbon-rich objects are presented. The unidentified emission features at 21 and 30 microns are detected in six sources, including four new detections of the 30 micron feature. This previously unresolved 30 micron feature is now resolved and found to consist of a broad feature peaking at 27.2 microns (the '30 micron' feature) and a narrower feature at 25.5 microns (the '26 micron' feature). This new 26 micron feature is detected in eight sources and is particularly strong in IRAS Z02229 + 6208 and 16594-4656. The unidentified infrared (UIR) emission features at 3.3, 6.2, 7.7, and 11.3 microns which are commonly observed in planetary nebulae and H II regions, are also seen in these PPNs. However, their strengths relative to the continuum plateaus at 8 and 12 microns are weaker than in planetary nebulae. The 6.9 micron feature, seen almost exclusively in PPNs, is strong. New millimeter CO and HCN observations were made; they support the carbon-rich nature of the objects and yield the expansion velocities of the gaseous envelopes. The spectral energy distributions of these PPNs were fitted with a radiative-transfer model, taking into account the emission features at 21, 26, and 30 microns. A significant fraction of the total energy output is emitted in these features: as high as 20% in the 30 micron feature and 8% in the 21 micron feature. The fact that so much energy is carried in these features suggests that the material responsible for these features must be made of abundant elements and most likely involves carbon. SiS, appears to be ruled out as the emitter of the 21 micron feature due to the absence of a predicted companion feature.

SEARCHING FOR NEW {gamma}-RAY BLAZAR CANDIDATES IN THE THIRD PALERMO BAT HARD X-RAY CATALOG WITH WISE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Maselli, A.; Cusumano, G.; La Parola, V.

We searched for {gamma}-ray blazar candidates among the 382 unidentified hard X-ray sources of the third Palermo BAT Catalog (3PBC) obtained from the analysis of 66 months of Swift Burst Alert Telescope (BAT) survey data and listing 1586 sources. We adopted a recently developed association method based on the peculiar infrared colors that characterize the {gamma}-ray blazars included in the second catalog of active galactic nuclei detected by the Fermi Large Area Telescope. We used this method exploiting the data of the all-sky survey performed by the Wide-field Infrared Survey Explorer (WISE) to establish correspondences between unidentified 3PBC sources andmore » WISE {gamma}-ray blazar candidates located within the BAT positional uncertainty region at a 99% confidence level. We obtained a preliminary list of candidates for which we analyzed all the available data in the Swift archive to complement the information in the literature and in the radio, infrared, and optical catalogs with the information on their optical-UV and soft X-ray emission. Requiring the presence of radio and soft X-ray counterparts consistent with the infrared positions of the selected WISE sources, as well as a blazar-like radio morphology, we finally obtained a list of 24 {gamma}-ray blazar candidates.« less

Finding the rarest objects in the universe: A new, efficient method for discovering BL Lacertae objects

NASA Technical Reports Server (NTRS)

Stocke, John; Perlman, Eric; Granados, Arno; Schachter, Jonathan; Elvis, Martin; Urry, Meg; Impey, Chris; Smith, Paul

1993-01-01

We present a new, efficient method for discovering new BL Lac Objects based upon the results of the Einstein Extended Medium Sensitivity Survey (EMSS). We have found that all x-ray selected BL Lacs are radio emitters, and further, that in a 'color-color' diagram (radio/optical and optical/x-ray) the BL Lac Objects occupy an area distinct from both radio loud quasars and the radio quiet QSOs and Seyferts which dominate x-ray selected samples. After obtaining radio counterparts via VLA 'snapshot' observations of a large sample of unidentified x-ray sources, the list of candidates is reduced. These candidates then can be confirmed with optical spectroscopy and/or polarimetry. Since greater than 70 percent of these sources are expected to be BL Lacs, the optical observations are very efficient. We have tested this method using unidentified sources found in the Einstein Slew Survey. The 162 Slew Survey x-ray source positions were observed with the VLA in a mixed B/C configuration at 6 cm resulting in 60 detections within 1.5 position error circle radii. These x-ray/optical/radio sources were then plotted, and 40 BL Lac candidates were identified. To date, 10 candidates have been spectroscopically observed resulting in 10 new BL Lac objects! Radio flux, optical magnitude, and polarization statistics (obtained in white light with the Steward Observatory 2.3 m CCD polarimeter) for each are given.

Hydrogen peroxide yields mechanistic insights into human mRNA capping enzyme function

PubMed Central

Mullen, Nicholas J.

2017-01-01

Capping of nascent RNA polymerase II (Pol II) transcripts is required for gene expression and the first two steps are catalyzed by separate 5′ triphosphatase and guanylyltransferase activities of the human capping enzyme (HCE). The cap is added co-transcriptionally, but how the two activities are coordinated is unclear. Our previous in vitro work has suggested that an unidentified factor modulates the minimum length at which nascent transcripts can be capped. Using the same well-established in vitro system with hydrogen peroxide as a capping inhibitor, we show that this unidentified factor targets the guanylyltransferase activity of HCE. We also uncover the mechanism of HCE inhibition by hydrogen peroxide, and by using mass spectrometry demonstrate that the active site cysteine residue of the HCE triphosphatase domain becomes oxidized. Using recombinant proteins for the two separated HCE domains, we provide evidence that the triphosphatase normally acts on transcripts shorter than can be acted upon by the guanylyltransferase. Our further characterization of the capping reaction dependence on transcript length and its interaction with the unidentified modulator of capping raises the interesting possibility that the capping reaction could be regulated. PMID:29028835

A search for interstellar nitrous oxide

NASA Technical Reports Server (NTRS)

Wilson, W. J.; Snyder, L. E.

1981-01-01

An extensive search for interstellar nitrous oxide (N2O) has been made at two different frequencies, 75.4 and 100.5 GHz, in a number of molecular sources. No N2O signal was detected; however, a number of other spectral lines including two new transitions of methyl formate and several new unidentified lines were measured.

Multi-wavelength studies of Redback and Black Widow pulsars

NASA Astrophysics Data System (ADS)

Mignani, Roberto; Salvetti, David; Pallanca, Cristina; Marelli, Martino; De Luca, Andrea; Belfiore, Andrea Mario

2016-07-01

The unexpected Fermi discovery of more than 70 gamma-ray milli-second pulsars (MSPs) outside globular clusters, spurred the scientific interest on these objects, and opened new horizons in MSP astronomy and on the study of the evolution of neutron stars in compact binary systems, including the ablation process of the companion star in the so-called Black Widow (BW) and Redback (RB) systems. It is thought that an important fraction of the tens of unidentified pulsar-like Fermi sources at high latitude are MSPs, yet unidentified, owing to their extremely elusive radio emission. As shown in a few recent cases, optical observations have been instrumental to spot binary MSP candidates through the discovery of periodic modulations in the flux of their putative companions. In this contribution, we report on the recent follow-ups of several candidate binary MSPs carried out with optical and X-ray facilities, e.g. GROND and XMM-Newton, Swift. This program already lead to identification of the Fermi source 3FGL 2036.6-5618 as candidate RB system, through the detection of periodic (orbital) modulation of its X/optical flux (Salvetti et al. 2015).

Eucoilinae of North America: A revised catalog of genera and described species

USDA-ARS?s Scientific Manuscript database

This is a catalog of North American taxa of Eucoilinae, with little resemblance to previous regional catalogs, which have been lagging behind in the recent systematic work in the group. The current catalog comprises 34 genera, arranged in six tribes. Of these genera, 9 have only unidentified or unde...

Catecholamine, Corticosteroid and Ketone Excretion in Exercise and Hypoxia,

DTIC Science & Technology

OHCS excretion tended to be higher during the experimental period and subsequently lower overnight during the hypoxia week. Ketosis occurred in two...subjects. In one of these it could be readily related to previous extraneous stress. Excretion of unidentified ketones in overnight urines was sometimes suspected and occurred beyond doubt following gross ketosis . (Author)

An Approach to Meeting the Needs of Medical Students with Learning Disabilities.

ERIC Educational Resources Information Center

Walters, Janice A.; Croen, Lila G.

1993-01-01

A study at the Albert Einstein College of Medicine (Yeshiva University, New York) has identified students from each medical class with previously unidentified learning disabilities. In three case studies, the importance of early identification and support is illustrated. In each case, dramatic improvement occurred with student awareness and…

Characterization of dissolved organic matter in fogwater by excitation-emission matrix fluorescence spectroscopy

NASA Astrophysics Data System (ADS)

Birdwell, Justin E.; Valsaraj, Kalliat T.

Dissolved organic matter (DOM) present in fogwater samples collected in southeastern Louisiana and central-eastern China has been characterized using excitation-emission matrix fluorescence spectroscopy. The goal of the study was to illustrate the utility of fluorescence for obtaining information on the large fraction of organic carbon in fogwaters (typically >40% by weight) that defies characterization in terms of specific chemical compounds without the difficulty inherent in obtaining sufficient fogwater volume to isolate DOM for assessment using other spectroscopic and chemical analyses. Based on the findings of previous studies using other characterization methods, it was anticipated that the unidentified organic carbon fraction would have characteristic peaks associated with humic substances and fluorescent amino acids. Both humic- and protein-like fluorophores were observed in the fogwater spectra and fluorescence-derived indices for the fogwater had similar values to those of soil and sediment porewater. Greater biological character was observed in samples with higher organic carbon concentrations. Fogwaters are shown to contain a mixture of terrestrially- and microbially-derived fluorescent organic material, which is expected to be derived from an array of different sources, such as suspended soil and dust particles, biogenic emissions and organic substances generated by atmospheric processes. The fluorescence results indicate that much of the unidentified organic carbon present in fogwater can be represented by humic-like and biologically-derived substances similar to those present in other aquatic systems, though it should be noted that fluorescent signatures representative of DOM produced by atmospheric processing of organic aerosols may be contributing to or masked by humic-like fluorophores.

Characterization of dissolved organic matter in fogwater by excitation-emission matrix fluorescence spectroscopy

USGS Publications Warehouse

Birdwell, J.E.; Valsaraj, K.T.

2010-01-01

Dissolved organic matter (DOM) present in fogwater samples collected in southeastern Louisiana and central-eastern China has been characterized using excitation-emission matrix fluorescence spectroscopy. The goal of the study was to illustrate the utility of fluorescence for obtaining information on the large fraction of organic carbon in fogwaters (typically >40% by weight) that defies characterization in terms of specific chemical compounds without the difficulty inherent in obtaining sufficient fogwater volume to isolate DOM for assessment using other spectroscopic and chemical analyses. Based on the findings of previous studies using other characterization methods, it was anticipated that the unidentified organic carbon fraction would have characteristic peaks associated with humic substances and fluorescent amino acids. Both humic- and protein-like fluorophores were observed in the fogwater spectra and fluorescence-derived indices for the fogwater had similar values to those of soil and sediment porewater. Greater biological character was observed in samples with higher organic carbon concentrations. Fogwaters are shown to contain a mixture of terrestrially- and microbially-derived fluorescent organic material, which is expected to be derived from an array of different sources, such as suspended soil and dust particles, biogenic emissions and organic substances generated by atmospheric processes. The fluorescence results indicate that much of the unidentified organic carbon present in fogwater can be represented by humic-like and biologically-derived substances similar to those present in other aquatic systems, though it should be noted that fluorescent signatures representative of DOM produced by atmospheric processing of organic aerosols may be contributing to or masked by humic-like fluorophores. ?? 2010.

Multiwavelength Studies of the Peculiar Gamma-ray Source 3EG J1835+5918

NASA Technical Reports Server (NTRS)

Reimer, O.; Brazier, K. T. S.; Carraminana, A.; Kanbach, G.; Nolan, P. L.; Thompson, D. J.

1999-01-01

The source 3EG J1835+5918 was discovered early in the CGRO (Compton Gamma Ray Observatory) mission by EGRET as a bright unidentified gamma-ray source outside the galactic plane. Especially remarkable, it has not been possible to identify this object with any known counterpart in any other wavelengths band since then. Analyzing our recent ROSAT HRI observation, for the first time we are able to suggest X-ray counterparts of 3EG J1835+5918. The discovered X-ray sources were subject of deep optical investigations in order to reveal their nature and conclude on the possibility of being counterparts for this peculiar gamma-ray source.

Embolic Strokes of Unknown Source and Cryptogenic Stroke: Implications in Clinical Practice

PubMed Central

Nouh, Amre; Hussain, Mohammed; Mehta, Tapan; Yaghi, Shadi

2016-01-01

Up to a third of strokes are rendered cryptogenic or of undetermined etiology. This number is specifically higher in younger patients. At times, inadequate diagnostic workups, multiple causes, or an under-recognized etiology contributes to this statistic. Embolic stroke of undetermined source, a new clinical entity particularly refers to patients with embolic stroke for whom the etiology of embolism remains unidentified despite through investigations ruling out established cardiac and vascular sources. In this article, we review current classification and discuss important clinical considerations in these patients; highlighting cardiac arrhythmias and structural abnormalities, patent foramen ovale, paradoxical sources, and potentially under-recognized, vascular, inflammatory, autoimmune, and hematologic sources in relation to clinical practice. PMID:27047443

Detection of X-ray flares from AX J1714.1-3912, the unidentified source near RX J1713.7-3946

NASA Astrophysics Data System (ADS)

Miceli, Marco; Bamba, Aya

2018-04-01

Context. Molecular clouds are predicted to emit nonthermal X-rays when they are close to particle-accelerating supernova remnants (SNRs), and the hard X-ray source AX J1714.1-3912, near the SNR RX J1713.7-3946, has long been considered a candidate for diffuse nonthermal emission associated with cosmic rays diffusing from the remnant to a closeby molecular cloud. Aim. We aim at ascertaining the nature of this source by analyzing two dedicated X-ray observations performed with Suzaku and Chandra. Methods: We extracted images from the data in various energy bands, spectra, and light curves and studied the long-term evolution of the X-ray emission on the basis of the 4.5 yr time separation between the two observations. Results: We found that there is no diffuse emission associated with AX J1714.1-3912, which is instead the point-like source CXOU J171343.9-391205. We discovered rapid time variability (timescale 103 s), together with a high intrinsic absorption and a hard nonthermal spectrum (power law with photon index Γ 1.4). We also found that the X-ray flux of the source drops down by 1-2 orders of magnitude on a timescale of a few years. Conclusions: Our results suggest a possible association between AX J1714.1-3912 and a previously unknown supergiant fast X-ray transient, although further follow-up observations are necessary to prove this association definitively.

Swift follow-up of 1RXS J194211.9+255552

NASA Astrophysics Data System (ADS)

Sidoli, L.; Fiocchi, M.; Bird, A. J.; Drave, S. P.; Bazzano, A.; Persi, P.; Tarana, A.; Sguera, V.; Chenevez, J.; Kuulkers, E.

2011-12-01

Following the INTEGRAL/JEM-X detection of the unidentified source 1RXS J194211.9+255552 (ATel #3816) on December 18, we asked for a Swift/XRT follow-up observation. Swift observed the source field on December 21, 2011 at 06:10:09.7 (UTC), with a net exposure of 1756 s. Within the ROSAT error circle there is only one pointlike source, at the following position (J2000): RA(hh mm ss.s) = 19h42m11.13s, Dec(dd mm ss.s) = +25:56:07.32 (3.6 arcsec error radius).

Optical identification of IGR J18308-1232 as a Cataclysmic Variable

NASA Astrophysics Data System (ADS)

Parisi, P.; Masetti, N.; Jimenez, E.; Chavushyan, V.; Bassani, L.; Bazzano, A.; Bird, A. J.

2008-09-01

We report on a spectroscopic analysis of optical sources inside the error circle of the XMM-Newton slew source XMMLS1 J183049.6-123218 (see Ibarra et al., ATel #1527), associated with the unidentified INTEGRAL source IGR J18308-1232 (Bird et al. 2007, ApJS, 170, 175). The observations were performed on 2008 June 28, starting at 06:37 UT, with the Boller & Chivens spectrograph mounted on the 2.1m telescope of the Observatorio Astronomico Nacional (San Pedro Martir, Baja California, Mexico), for a total exposure time of 7200 s.

The multiple infrared source GL 437

NASA Technical Reports Server (NTRS)

Wynn-Williams, C. G.; Becklin, E. E.; Beichman, C. A.; Capps, R.; Shakeshaft, J. R.

1981-01-01

Infrared and radio continuum observations of the multiple infrared source GL 437 show that it consists of a compact H II region plus two objects which are probably early B stars undergoing rapid mass loss. The group of sources appears to be a multiple system of young stars that have recently emerged from the near side of a molecular cloud. Emission in the unidentified 3.3 micron feature is associated with, but more extended than, the emission from the compact H II region; it probably arises from hot dust grains at the interface between the H II region and the molecular cloud.

Whole Genome Shotgun Analysis: the Resolving Power to Distinguish 2009 and 2010 Clinical Isolates of Salmonella Typhimurium Possessing the Same PFGE Type

USDA-ARS?s Scientific Manuscript database

Between 2009 and 2011, Salmonella enterica subsp. enterica serovar Typhimurium with the JPXX01.0014 pulse field gel electrophoresis (PFGE) type was isolated across the United States. The 2009 isolates were associated with an outbreak from an unidentified food source, while later isolates were linked...

Plasma in a Pulsed Discharge Environment

NASA Technical Reports Server (NTRS)

Remy, J.; Bienier, L.; Salama, F.

2005-01-01

The plasma generated in a pulsed slit discharge nozzle is used to form molecular ions in an astrophysically relevant environment. The plasma has been characterized as a glow discharge in the abnormal regime. Laboratory studies help understand the formation processes of polycyclic aromatic hydrocarbon (PAH) ions that are thought to be the source of the ubiquitous unidentified infrared bands.

Dental DNA fingerprinting in identification of human remains

PubMed Central

Girish, KL; Rahman, Farzan S; Tippu, Shoaib R

2010-01-01

The recent advances in molecular biology have revolutionized all aspects of dentistry. DNA, the language of life yields information beyond our imagination, both in health or disease. DNA fingerprinting is a tool used to unravel all the mysteries associated with the oral cavity and its manifestations during diseased conditions. It is being increasingly used in analyzing various scenarios related to forensic science. The technical advances in molecular biology have propelled the analysis of the DNA into routine usage in crime laboratories for rapid and early diagnosis. DNA is an excellent means for identification of unidentified human remains. As dental pulp is surrounded by dentin and enamel, which forms dental armor, it offers the best source of DNA for reliable genetic type in forensic science. This paper summarizes the recent literature on use of this technique in identification of unidentified human remains. PMID:21731342

Male Brown-headed Cowbird Attacks and Kills a Nestling

USGS Publications Warehouse

Igl, L.D.

2003-01-01

I observed a male Brown-headed Cowbird (Molothrus ater) attack and kill a nestling of an unidentified passerine in a grassland field in Day County, South Dakota, in June 2000. The killing or removal of nestlings by female cowbirds has been reported by others, but this behavior has not been documented previously in male cowbirds.

Genetic engineering of syringyl-enriched lignin in plants

DOEpatents

Chiang, Vincent Lee; Li, Laigeng

2004-11-02

The present invention relates to a novel DNA sequence, which encodes a previously unidentified lignin biosynthetic pathway enzyme, sinapyl alcohol dehydrogenase (SAD) that regulates the biosynthesis of syringyl lignin in plants. Also provided are methods for incorporating this novel SAD gene sequence or substantially similar sequences into a plant genome for genetic engineering of syringyl-enriched lignin in plants.

The European oak borer, Agrilus sulcicollis (Coleoptera: Buprestidae): new to North America

Treesearch

Robert A. Haack; Vasily V. Grebennikov; Eduard Jendek; Toby R. Petrice; James E. Zablotny

2011-01-01

The European oak borer, Agrilus sulcicollis Lacordaire, was first reported in North America in Ontario in 2008 and then in Michigan and New York in 2009 (Haack et al. 2009, Jendek and Grebennikov 2009). Subsequent examination of previously unidentified specimens in Canadian and U.S. museums and personal collections found A. sulcicollis...

Review of Phytophthora ramorum in European and North American nurseries

Treesearch

Janice Alexander

2006-01-01

In 2000, a previously unidentified Phytophthora isolated from rhododendrons in European nurseries and gardens was determined to be the same species – but a different population and mating type – as the pathogen causing sudden oak death in California. Upon recognizing the threats that P. ramorum posed to both wildlands and the...

8 CFR 212.3 - Application for the exercise of discretion under section 212(c).

Code of Federal Regulations, 2010 CFR

2010-01-01

... these previously unidentified grounds or upon new ground(s), a new application must be filed. (e) Filing... shall be made to the Immigration Court. (b) Filing of application. The application may be filed prior to... Immigration Judge as provided in paragraph (e) of this section. (d) Validity. Once an application is approved...

Magsat equivalent source anomalies over the southeastern United States - Implications for crustal magnetization

NASA Technical Reports Server (NTRS)

Ruder, M. E.; Alexander, S. S.

1986-01-01

The Magsat crustal anomaly field depicts a previously-unidentified long-wavelength negative anomaly centered over southeastern Georgia. Examination of Magsat ascending and descending passes clearly identifies the anomalous region, despite the high-frequency noise present in the data. Using ancillary seismic, electrical conductivity, Bouguer gravity, and aeromagnetic data, a preliminary model of crustal magnetization for the southern Appalachian region is presented. A lower crust characterized by a pervasive negative magnetization contrast extends from the New York-Alabama lineament southeast to the Fall Line. In southern Georgia and eastern Alabama (coincident with the Brunswick Terrane), the model calls for lower crustal magnetization contrast of -2.4 A/m; northern Georgia and the Carolinas are modeled with contrasts of -1.5 A/m. Large-scale blocks in the upper crust which correspond to the Blue Ridge, Charlotte belt, and Carolina Slate belt, are modeled with magnetization contrasts of -1.2 A/m, 1.2 A/m, and 1.2 A/m respectively. The model accurately reproduces the amplitude of the observed low in the equivalent source Magsat anomaly field calculated at 325 km altitude and is spatially consistent with the 400 km lowpass-filtered aeromagnetic map of the region.

MULTIBAND DIAGNOSTICS OF UNIDENTIFIED 1FGL SOURCES WITH SUZAKU AND SWIFT X-RAY OBSERVATIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Takeuchi, Y.; Kataoka, J.; Maeda, K.

2013-10-01

We have analyzed all the archival X-ray data of 134 unidentified (unID) gamma-ray sources listed in the first Fermi/LAT (1FGL) catalog and subsequently followed up by the Swift/XRT. We constructed the spectral energy distributions (SEDs) from radio to gamma-rays for each X-ray source detected, and tried to pick up unique objects that display anomalous spectral signatures. In these analyses, we target all the 1FGL unID sources, using updated data from the second Fermi/LAT (2FGL) catalog on the Large Area Telescope (LAT) position and spectra. We found several potentially interesting objects, particularly three sources, 1FGL J0022.2–1850, 1FGL J0038.0+1236, and 1FGL J0157.0–5259,more » which were then more deeply observed with Suzaku as a part of an AO-7 program in 2012. We successfully detected an X-ray counterpart for each source whose X-ray spectra were well fitted by a single power-law function. The positional coincidence with a bright radio counterpart (currently identified as an active galactic nucleus, AGN) in the 2FGL error circles suggests these sources are definitely the X-ray emission from the same AGN, but their SEDs show a wide variety of behavior. In particular, the SED of 1FGL J0038.0+1236 is not easily explained by conventional emission models of blazars. The source 1FGL J0022.2–1850 may be in a transition state between a low-frequency peaked and a high-frequency peaked BL Lac object, and 1FGL J0157.0–5259 could be a rare kind of extreme blazar. We discuss the possible nature of these three sources observed with Suzaku, together with the X-ray identification results and SEDs of all 134 sources observed with the Swift/XRT.« less

How floral odours are learned inside the bumblebee ( Bombus terrestris) nest

NASA Astrophysics Data System (ADS)

Molet, Mathieu; Chittka, Lars; Raine, Nigel E.

2009-02-01

Recruitment in social insects often involves not only inducing nestmates to leave the nest, but also communicating crucial information about finding profitable food sources. Although bumblebees transmit chemosensory information (floral scent), the transmission mechanism is unknown as mouth-to-mouth fluid transfer (as in honeybees) does not occur. Because recruiting bumblebees release a pheromone in the nest that triggers foraging in previously inactive workers, we tested whether this pheromone helps workers learn currently rewarding floral odours, as found in food social learning in rats. We exposed colonies to artificial recruitment pheromone, paired with anise scent. The pheromone did not facilitate learning of floral scent. However, we found that releasing floral scent in the air of the colony was sufficient to trigger learning and that learning performance was improved when the chemosensory cue was provided in the nectar in honeypots; probably because it guarantees a tighter link between scent and reward, and possibly because gustatory cues are involved in addition to olfaction. Scent learning was maximal when anise-scented nectar was brought into the nest by demonstrator foragers, suggesting that previously unidentified cues provided by successful foragers play an important role in nestmates learning new floral odours.

A Family Clustered Nitrite Intoxication Investigation in Gaoxin District, Suzhou, China, 2013.

PubMed

Wang, Ruiping; Teng, Chengang; Zhang, Ning; Zhang, Jun; Conway, George

2013-12-01

In April, 2013, a Suzhou Hospital reported a nitrite intoxication patient in coma as well as 2 family members with the similar symptom 5 days ahead. We investigated the event to identify the cause, source and possible pollution ways of the contamination. We defined case as any person living in YSHY community who has cyanosis and with at least one of the following symptoms: dizziness, headache, fatigue, tachycardia, drowsiness, nausea, vomiting, abdominal pain or diar-rhea during April 15 to April 25, 2013. We searched for case by interviewing community residents and reviewing clinics' medical records; information was then retrospectively collected on the patient's food history, cooking procedures and food sources. We identified 3 nitrite intoxication cases, 1 male and 2 female from a family. The interval time between dinner and onset was < 1 hour. Retrospective survey showed 'sugar stir and mix asparagus' on April 17 and 'scrambled asparagus' on April 21 were suspected foods. Both suspected dishes had 'sugar' added, sourced from a clean-up of a neighboring rental house. Nitrite was detected in a vomitus sample, the 'sugar' and two leftover food samples. This family clustered nitrite intoxication was induced by using unidentified nitrite as sugar to cook dishes. We recommend sodium nitrite should be dyed with bright colors to avoid mistaking it for plain salt or sugar, health departments strengthen food hygiene propaganda to improve people's recognition of food safety, and to alert them the dangerous of eating unidentified or unknown source food.

Oxidant-induced damage to equine erythrocytes from exposure to Pistacia atlantica, Pistacia terebinthus, and Pistacia chinensis.

PubMed

Walter, Kyla M; Moore, Caroline E; Bozorgmanesh, Rana; Magdesian, K Gary; Woods, Leslie W; Puschner, Birgit

2014-11-01

Two horses were referred for methemoglobinemia and hemolytic anemia following 5 acute deaths in their herd from an unidentified toxin source. Horses have a greater risk than other mammalian species of developing methemoglobinemia and hemolytic anemia following ingestion of oxidizing toxins, due to deficiencies in the mechanisms that protect against oxidative damage in erythrocytes. Their susceptibility to oxidative erythrocyte damage is evident in the numerous cases of red maple (Acer rubrum) toxicosis. The suspected toxins causing A. rubrum toxicosis are tannic acid, gallic acid, and a metabolite of gallic acid, pyrogallol. These compounds can be found in a variety of plants, posing a risk to equine health. In order to quickly identify toxin sources, 2 rapid in vitro assays were developed to screen plant extracts for the ability to induce methemoglobin formation or cause hemolysis in healthy equine donor erythrocytes. The plant extract screening focused on 3 species of the genus Pistacia: P. atlantica, P. terebinthus, and P. chinensis, which were located in the horse pasture. Extracts of the seeds and leaves of each species induced methemoglobin formation and resulted in hemolysis, with seed extracts having greater potency. The in vitro assays used in the current study provide a useful diagnostic method for the rapid identification of oxidizing agents from unidentified sources. There is no effective treatment for oxidative erythrocyte damage in horses, making rapid identification and removal of the source essential for the prevention of poisoning. © 2014 The Author(s).

Oxidant-induced damage to equine erythrocytes from exposure to Pistacia atlantica, Pistacia terebinthus, and Pistacia chinensis

PubMed Central

Walter, Kyla M.; Moore, Caroline E.; Bozorgmanesh, Rana; Magdesian, K. Gary; Woods, Leslie W.; Puschner, Birgit

2017-01-01

Two horses were referred for methemoglobinemia and hemolytic anemia following 5 acute deaths in their herd from an unidentified toxin source. Horses have a greater risk than other mammalian species of developing methemoglobinemia and hemolytic anemia following ingestion of oxidizing toxins, due to deficiencies in the mechanisms that protect against oxidative damage in erythrocytes. Their susceptibility to oxidative erythrocyte damage is evident in the numerous cases of red maple (Acer rubrum) toxicosis. The suspected toxins causing A. rubrum toxicosis are tannic acid, gallic acid, and a metabolite of gallic acid, pyrogallol. These compounds can be found in a variety of plants, posing a risk to equine health. In order to quickly identify toxin sources, 2 rapid in vitro assays were developed to screen plant extracts for the ability to induce methemoglobin formation or cause hemolysis in healthy equine donor erythrocytes. The plant extract screening focused on 3 species of the genus Pistacia: P. atlantica, P. terebinthus, and P. chinensis, which were located in the horse pasture. Extracts of the seeds and leaves of each species induced methemoglobin formation and resulted in hemolysis, with seed extracts having greater potency. The in vitro assays used in the current study provide a useful diagnostic method for the rapid identification of oxidizing agents from unidentified sources. There is no effective treatment for oxidative erythrocyte damage in horses, making rapid identification and removal of the source essential for the prevention of poisoning. PMID:25227420

Recent Results on SNRs and PWNe from the Fermi Large Area Telescope

NASA Technical Reports Server (NTRS)

Hays, Elizabeth A.

2010-01-01

Topics include: Fermi LAT Collaboration groups; galactic results from LAT; a GeV, wide-field instrument; the 1FGL catalog, the Fermi LAT 1FGL source catalog, unidentified gamma-ray sources; variability in 1FGL sources; curvature in 1FGL sources; spectral-variability classification; gamma-ray pulsars and MSPs; GeV PWN - where to look; Crab pulsar and nebula; Vela X nebular of Vela pulsar; MSH 15-52; GeV PWNe spectra; GeV nebula limits; Nebula search of LAT pulsars; supernova remnants; SNR: GeV morphology; SNR: molecular connection; SNR: GeV breaks; SNR: young vs. old. The summary includes slides about the Large Area Telescope (LAT) and LAT sensitivity with time.

Currency notes and coins as a possible source of transmitting fungal pathogens of man and plants.

PubMed

Wanule, Dinesh; Jalander, Vaghmare; Gachande, B D; Sirsikar, A N

2011-10-01

Currency (notes and coins) handling by people during transaction is one of the most mobile objects within the community, which has a potential of transmitting pathogens. A survey carried out recently in Nanded city (Maharashtra) revealed heavy contamination of currency notes and coins by important fungal pathogens of plants and man, i.e. Aspergillus niger (60.37%), A. flavus (3.98%), A.nidulans (0.2%), Penicillium citrinum (17.80%), Alternaria tenuis (0.20%), Curvularia pallescens (0.20%), Cladosporium cladosporioides (10.69%), Rhizopus stolonifer (1.04%), an unidentified Aspergillus species .1 (0.20%) and another unidentified Aspergillus species.2 (3.14%), Fusarium sp. (0.20%), Trichoderma viride (0.20%),white sterile mycelium (0.62%) and brown sterile mycelium (0.62%). The study highlights the importance of preventing and controlling fungal contamination of currency notes and coins in public health and plant protection. Currency notes or coins are rarely suspected as infection sources and often not quarantined at airport or seaport terminal. Possible transmission of pathogens or "alien", invasive species through currency across borders or across countries needs to be taken into consideration especially under circumstances of serious outbreak of important disease or when there is a threat of biological warfare.

Rediscovery of Eugenia fajardensis (Myrtaceae), a rare tree from the Puerto Rican Bank

Treesearch

Jorge C. Trejo-Torres; Marcos A. Caraballo-Ortiz; Miguel A. Vives-Heyliger; Christian W. Torres-Santana; William Cetzal-Ix; Joel A. Mercado-Diaz; Tomas A. Carlo

2014-01-01

Eugenia fragrans var.? fajardensis was described in 1895 and raised to species status in 1923 as E. fajardensis. In 1925, it was relegated to the synonymy of Anamomis fragrans (Myrcianthes fragrans). Since 2001, we have re-discovered wild plants and herbarium specimens, including a previously unidentified isotype of E. fajardensis, supporting the validity of this...

On the Use of the Passive and Active Voice in Astrophysics Journal Papers: With Extensions to Other Languages and Other Fields.

ERIC Educational Resources Information Center

Tarone, Elaine; Dwyer, Sharon; Gillette, Susan; Icke, Vincent.

1998-01-01

A study examined frequency of active, passive verb forms in two astrophysics journal articles, finding "we" plus an active voice occurs at least as frequently as the passive. This pattern typifies a previously unidentified type of research article, the logical argument scientific paper, whose characteristics are detailed. Similar pattern…

Preparing the Underprepared: An Analysis of Racial Disparities in Postsecondary Mathematics Remediation

ERIC Educational Resources Information Center

Bahr, Peter Riley

2010-01-01

In this study, I examine racial disparities in successful remediation in math. I first quantify a previously unidentified racial gap in successful remediation and then seek to explain this gap through a set of mediating and moderating variables. In addition, I test the relative efficacy of remediation across racial groups. (Contains 6 tables and 5…

Ceramide synthase inhibition causes accumulation of 1-deoxysphinganine: biosynthesis of a novel category of bioactive sphingoid bases in diverse mammalian cell linesa and mice

USDA-ARS?s Scientific Manuscript database

Fumonisins (FB) are mycotoxins that inhibit ceramide synthases (CerS) and cause animal and plant disease. Inhibition of CerS results in a rapid increases in sphinganine (Sa), an intermediate of de novo sphingolipid biosynthesis, sphinganine 1-phosphate, and a previously unidentified metabolite tha...

Bitter triggers acetylcholine release from polymodal urethral chemosensory cells and bladder reflexes.

PubMed

Deckmann, Klaus; Filipski, Katharina; Krasteva-Christ, Gabriela; Fronius, Martin; Althaus, Mike; Rafiq, Amir; Papadakis, Tamara; Renno, Liane; Jurastow, Innokentij; Wessels, Lars; Wolff, Miriam; Schütz, Burkhard; Weihe, Eberhard; Chubanov, Vladimir; Gudermann, Thomas; Klein, Jochen; Bschleipfer, Thomas; Kummer, Wolfgang

2014-06-03

Chemosensory cells in the mucosal surface of the respiratory tract ("brush cells") use the canonical taste transduction cascade to detect potentially hazardous content and trigger local protective and aversive respiratory reflexes on stimulation. So far, the urogenital tract has been considered to lack this cell type. Here we report the presence of a previously unidentified cholinergic, polymodal chemosensory cell in the mammalian urethra, the potential portal of entry for bacteria and harmful substances into the urogenital system, but not in further centrally located parts of the urinary tract, such as the bladder, ureter, and renal pelvis. Urethral brush cells express bitter and umami taste receptors and downstream components of the taste transduction cascade; respond to stimulation with bitter (denatonium), umami (monosodium glutamate), and uropathogenic Escherichia coli; and release acetylcholine to communicate with other cells. They are approached by sensory nerve fibers expressing nicotinic acetylcholine receptors, and intraurethral application of denatonium reflexively increases activity of the bladder detrusor muscle in anesthetized rats. We propose a concept of urinary bladder control involving a previously unidentified cholinergic chemosensory cell monitoring the chemical composition of the urethral luminal microenvironment for potential hazardous content.

[Characteristics of natural strains of naphthalene-utilizing bacteria of the genus Pseudomonas].

PubMed

Levchuk, A A; Vasilenko, S L; Bulyga, I M; Titok, M A; Thomas, K M

2005-01-01

Sixty-three strains of bacteria capable of utilizing naphthalene as the sole source of carbon and energy were isolated from 137 samples of soil taken in different sites in Belarus. All isolated bacteria contained extrachromosomal genetic elements of 45 to 150 kb in length. It was found that bacteria of 31 strains contained the IncP-9 incompatibility group plasmids, bacteria of one strain carried a plasmid containing replicons IncP-9 and IncP-7, and bacteria of 31 strains contained unidentified plasmids. Primary identification showed that the hosts of plasmids of naphthalene biodegradation are fluorescent bacteria of the genus Pseudomonas (P. putida and P. aeruginosa; a total of 47 strains) and unidentified nonfluorescent microorganisms (a total of 16 strains). In addition to the ability to utilize naphthalene, some strains exhibited the ability to stimulate the growth and development of the root system of Secale cereale.

Evaluation of (GTG)5-PCR for identification of Enterococcus spp.

PubMed

Svec, Pavel; Vancanneyt, Marc; Seman, Milan; Snauwaert, Cindy; Lefebvre, Karen; Sedlácek, Ivo; Swings, Jean

2005-06-01

A set of reference strains and a group of previously unidentified enterococci were analysed by rep-PCR with the (GTG)(5) primer to evaluate the discriminatory power and suitability of this method for typing and identification of enterococcal species. A total of 49 strains representing all validly described species were obtained from bacterial collections. For more extensive evaluation of this identification approach 112 well-defined and identified enterococci isolated from bryndza cheese were tested. The (GTG)(5)-PCR fingerprinting assigned all strains into well-differentiated clusters representing individual species. Subsequently, a group including 44 unidentified enterococci isolated from surface waters was analysed to evaluate this method for identification of unknown isolates. Obtained band patterns allowed us to identify all the strains clearly to the species level. This study proved that rep-PCR with (GTG)(5) primer is a reliable and fast method for species identification of enterococci.

Earthquake studies reveal the magmatic plumbing system of the Katmai volcanoes

USGS Publications Warehouse

Thurber, Clifford; Murphy, Rachel; Prejean, Stephanie G.; Haney, Matthew M.; Bennington, Ninfa; Powell, Lee; Paskievitch, John F.

2012-01-01

Our main finding is that there is not a single large anomalous zone centered beneath Katmai Pass; rather there are several separate anomalous zones, one each beneath Katmai, Trident-Novarupta, and Martin-Mageik. Furthermore, the earthquakes are tightly clustered beneath the various volcanic centers, and are found to be systematically deeper than previously thought. Linear trends of earthquakes are also revealed, similar to features observed at other volcanoes, possibly outlining previously unidentified fault structures or indicating the path of migrating magma or magmatic fluids and gases.

Ischemic stroke after use of the synthetic marijuana "spice".

PubMed

Freeman, Melissa J; Rose, David Z; Myers, Martin A; Gooch, Clifton L; Bozeman, Andrea C; Burgin, W Scott

2013-12-10

To report and associate acute cerebral infarctions in 2 young, previously healthy siblings with use of the street drug known as "spice" (a synthetic marijuana product, also known as "K2"), which they independently smoked before experiencing acute embolic-appearing ischemic strokes. We present history, physical examination, laboratory data, cerebrovascular imaging, echocardiogram, ECG, and hospital course of these patients. We found that in both siblings spice was obtained from the same source. The drug was found to contain the schedule I synthetic cannabinoid JWH-018. Full stroke workup was unrevealing of a stroke etiology; urine drug screen was positive for marijuana. We found that our 2 patients who smoked the street drug spice had a temporal association with symptoms of acute cerebral infarction. This association may be confounded by contaminants in the product consumed (i.e., marijuana or an unidentified toxin) or by an unknown genetic mechanism. The imaging of both patients suggests an embolic etiology, which is consistent with reports of serious adverse cardiac events with spice use, including tachyarrhythmias and myocardial infarctions.

Dibenzo-p-dioxins in the environment from ceramics and pottery produced from ball clay mined in the United States

NASA Technical Reports Server (NTRS)

Ferrario, Joseph; Byrne, Christian

2002-01-01

Processed ball clay samples used in the production of ceramics and samples of the ceramic products were collected and analyzed for the presence and concentration of the 2,3,7,8-Cl substituted polychlorinated dibenzo-p-dioxins and -furans (PCDDs/PCDFs). The processed ball clay had average PCDD concentrations of 3.2 ng/g toxic equivalents, a congener profile, and isomer distribution consistent with those found previously in raw ball clay. The PCDF concentrations were below the average limit of detection (LOD) of 0.5 pg/g. The final fired ceramic products were found to be free of PCDDs/PCDFs at the LODs. A consideration of the conditions involved in the firing process suggests that the PCDDs, if not destroyed, may be released to the atmosphere and could represent an as yet unidentified source of dioxins to the environment. In addition, the PCDDs in clay dust generated during manufacturing operations may represent a potential occupational exposure.

The discovery and properties of the ultra-soft X-ray transient EXO 1846-031

NASA Technical Reports Server (NTRS)

Parmar, A. N.; Angelini, L.; Roche, P.; White, N. E.

1993-01-01

We report the discovery of a previously uncataloged ultra-soft X-ray transient EXO 1846-031 which was in outburst during 1985 April to September. The X-ray spectrum consists of an ultra-soft component and a high-energy power-law tail that extends to at least 25 keV. The ultra-soft component may be modeled by either a cutoff power-law or a multicolor blackbody disk model. The latter model allows the evolution in spectrum and intensity observed during the outburst to be accounted for by the change in a single parameter - the temperature at the innermost disk radius. We demonstrate that at least one other accretion disk model is able to account for these changes by the variation of a single parameter. During one of the three EXOSAT observations, EXO 1846-031 exhibited significant intensity variability which probably originates from the power-law component. We derive a position for this unidentified source and present the results of a search for the optical counterpart.

Effects of cyclone-generated disturbance on a tropical reef foraminifera assemblage.

PubMed

Strotz, Luke C; Mamo, Briony L; Dominey-Howes, Dale

2016-04-29

The sedimentary record, and associated micropalaeontological proxies, is one tool that has been employed to quantify a region's tropical cyclone history. Doing so has largely relied on the identification of allochthonous deposits (sediments and microfossils), sourced from deeper water and entrained by tropical cyclone waves and currents, in a shallow-water or terrestrial setting. In this study, we examine microfossil assemblages before and after a known tropical cyclone event (Cyclone Hamish) with the aim to better resolve the characteristics of this known signal. Our results identify no allochthonous material associated with Cyclone Hamish. Instead, using a swathe of statistical tools typical of ecological studies but rarely employed in the geosciences, we identify new, previously unidentified, signal types. These signals include a homogenising effect, with the level of differentiation between sample sites greatly reduced immediately following Cyclone Hamish, and discernible shifts in assemblage diversity. In the subsequent years following Hamish, the surface assemblage returns to its pre-cyclone form, but results imply that it is unlikely the community ever reaches steady state.

Dibenzo-p-dioxins in the environment from ceramics and pottery produced from ball clay mined in the United States.

PubMed

Ferrario, Joseph; Byrne, Christian

2002-03-01

Processed ball clay samples used in the production of ceramics and samples of the ceramic products were collected and analyzed for the presence and concentration of the 2,3,7,8-Cl substituted polychlorinated dibenzo-p-dioxins and -furans (PCDDs/PCDFs). The processed ball clay had average PCDD concentrations of 3.2 ng/g toxic equivalents, a congener profile, and isomer distribution consistent with those found previously in raw ball clay. The PCDF concentrations were below the average limit of detection (LOD) of 0.5 pg/g. The final fired ceramic products were found to be free of PCDDs/PCDFs at the LODs. A consideration of the conditions involved in the firing process suggests that the PCDDs, if not destroyed, may be released to the atmosphere and could represent an as yet unidentified source of dioxins to the environment. In addition, the PCDDs in clay dust generated during manufacturing operations may represent a potential occupational exposure.

EC 19314 - 5915 - A bright, eclipsing cataclysmic variable from the Edinburgh-Cape Blue Object Survey

NASA Technical Reports Server (NTRS)

Buckley, D. A. H.; O'Donoghue, D.; Kilkenny, D.; Stobie, R. S.; Remillard, R. A.

1992-01-01

A deeply eclipsing cataclysmic variable, with an orbital period of 4.75 hr, has been discovered in the southern Edinburgh-Cape Blue Object Survey. The star, EC 19314 - 5915, lies close to the positional constraints of a previously unidentified HEAO-1 hard X-ray source, 1H1930 - 5989. Its optical spectrum is unusual in that it shows, apart from the emission lines characteristic of a novalike, or dwarf nova cataclysmic variable (Balmer, He I and He II), metallic absorption lines typical of a late-G star. The individual time-resolved spectra, with the tertiary absorption lines removed, show absorption reversals in the Balmer emission lines, increasing in strength for the higher series. The Balmer emission radial velocities are therefore severely distorted in comparison to the He II 4686-A emission and He I 4471-A absorption radial velocity curves. An independent distance estimate of about 600 pc is derived for EC19314 - 5915, from the spectroscopic parallax of the third star.

Metabolomics-Driven Discovery of a Prenylated Isatin Antibiotic Produced by Streptomyces Species MBT28.

PubMed

Wu, Changsheng; Du, Chao; Gubbens, Jacob; Choi, Young Hae; van Wezel, Gilles P

2015-10-23

Actinomycetes are a major source of antimicrobials, anticancer compounds, and other medically important products, and their genomes harbor extensive biosynthetic potential. Major challenges in the screening of these microorganisms are to activate the expression of cryptic biosynthetic gene clusters and the development of technologies for efficient dereplication of known molecules. Here we report the identification of a previously unidentified isatin-type antibiotic produced by Streptomyces sp. MBT28, following a strategy based on NMR-based metabolomics combined with the introduction of streptomycin resistance in the producer strain. NMR-guided isolation by tracking the target proton signal resulted in the characterization of 7-prenylisatin (1) with antimicrobial activity against Bacillus subtilis. The metabolite-guided genome mining of Streptomyces sp. MBT28 combined with proteomics identified a gene cluster with an indole prenyltransferase that catalyzes the conversion of tryptophan into 7-prenylisatin. This study underlines the applicability of NMR-based metabolomics in facilitating the discovery of novel antibiotics.

Nature of the Unidentified TeV Source HESS J1614-518 Revealed by Suzaku and XMM-Newton Observations

NASA Astrophysics Data System (ADS)

Sakai, M.; Yajima, Y.; Matsumoto, H.

2013-03-01

We report new results concerning HESS J1614-518, which exhibits two regions with intense γ-ray emission. The south and center regions of HESS J1614-518 were observed with Suzaku in 2008, while the north region with the 1st brightest peak was observed in 2006. No X-ray counterpart is found at the 2nd brightest peak; the upper limit of the X-ray flux is estimated as 1.6 × 10-13 erg cm-2 s-1 in the 2-10 keV band. A previously-known soft X-ray source, Suzaku J1614-5152, is detected at the center of HESS J1614-518. Analyzing the XMM-Newton archival data, we reveal that Suzaku J1614-5152 consists of multiple point sources. The X-ray spectrum of the brightest point source, XMMU J161406.0-515225, could be described by a power-law model with the photon index Γ = 5.2+0.6-0.5 or a blackbody model with the temperature kT = 0.38+0.04-0.04 {keV}. In the blackbody model, the estimated column density N H = 1.1+0.3-0.2 × 1022 {cm}-2 is almost the same as that of the hard extended X-ray emission in Suzaku J1614-5141, spatially coincident with the 1st peak position. In this case, XMMU J161406.0-515225 may be physically related to Suzaku J1614-5141 and HESS J1614-518.

Lead isotopes reveal different sources of lead in balsamic and other vinegars.

PubMed

Ndung'u, Kuria; Hibdon, Sharon; Véron, Alain; Flegal, A Russell

2011-06-15

Fifty-eight brands of balsamic vinegars were analyzed for lead concentrations and isotopic compositions ((204)Pb, (206)Pb, (207)Pb, and (208)Pb) to test the findings of a previous study indicating relatively high levels of lead contamination in some of those vinegars--more than two thirds (70%) of them exceeded California's State Maximum Level (34 μg/L) based on consumption rates ≥0.5 μg Pb per day. The lead isotopic fingerprints of all those vinegars with high lead concentrations were then found to be primarily anthropogenic. This isotopic analysis unquestionably reveals multiple contamination sources including atmospheric pollutant Pb and an unidentified contamination source, likely occurring after grape harvest. Organically grown grape vinegars display the same Pb content and isotopic signatures as other vinegars. This implies that pesticides might not be a significant source of pollutant Pb in vinegars. A significant post-harvest contamination would be inherited from chemicals added during production and/or material used during transport, processing or storage of these vinegars. This is consistent with the highest Pb levels being found in aged vinegars (112±112 μg/L) in contrast to other vinegars (41.6±28.9 μg/L) suggesting contamination during storage. It is, therefore, projected that lead levels in most vinegars, especially aged balsamic and wine vinegars, will decrease with improvements in their manufacture and storage processes consequential to recent concerns of elevated levels of lead in some vinegars. Copyright © 2011 Elsevier B.V. All rights reserved.

A new unified theory of electromagnetic and gravitational interactions

NASA Astrophysics Data System (ADS)

Li, Li-Xin

2016-12-01

In this paper we present a new unified theory of electromagnetic and gravitational interactions. By considering a four-dimensional spacetime as a hypersurface embedded in a five-dimensional bulk spacetime, we derive the complete set of field equations in the four-dimensional spacetime from the fivedimensional Einstein field equation. Besides the Einstein field equation in the four-dimensional spacetime, an electromagnetic field equation is obtained: ∇a F ab - ξ R b a A a = -4π J b with ξ = -2, where F ab is the antisymmetric electromagnetic field tensor defined by the potential vector A a , R ab is the Ricci curvature tensor of the hypersurface, and J a is the electric current density vector. The electromagnetic field equation differs from the Einstein-Maxwell equation by a curvature-coupled term ξ R b a A a , whose presence addresses the problem of incompatibility of the Einstein-Maxwell equation with a universe containing a uniformly distributed net charge, as discussed in a previous paper by the author [L.-X. Li, Gen. Relativ. Gravit. 48, 28 (2016)]. Hence, the new unified theory is physically different from Kaluza-Klein theory and its variants in which the Einstein-Maxwell equation is derived. In the four-dimensional Einstein field equation derived in the new theory, the source term includes the stress-energy tensor of electromagnetic fields as well as the stress-energy tensor of other unidentified matter. Under certain conditions the unidentified matter can be interpreted as a cosmological constant in the four-dimensional spacetime. We argue that, the electromagnetic field equation and hence the unified theory presented in this paper can be tested in an environment with a high mass density, e.g., inside a neutron star or a white dwarf, and in the early epoch of the universe.

Investigation of the Contribution of Lower Charger State Ar Ions to the Unknown Faint X-Ray Feature Found in the Stacked Spectrum of Galaxy Clusters

NASA Astrophysics Data System (ADS)

Gall, Amy

Driven by the recent detection of an unidentified emission line previously reported at 3.55-3.57 keV in a stacked spectrum of galaxy clusters, in this work we investigated the resonant dielectronic recombination (DR) process in Li-like Ar as a possible source of, or contributor to, the emission line. The Li-like transition 1s22l-1s2l3l' was suggested to produce a 3.62 keV photon [1] near the unidentified line at 3.57 keV and was the primary focus of our study. The Electron Beam Ion Trap at NIST was used to produce and trap the highly-charged ions of argon. The energy of the quasi-monoenergetic electron beam was incremented in steps of 15 eV to scan over all of the Li-like Ar DR resonances. A Johann-type crystal spectrometer and a solid-state germanium detector were used to take x-ray measurements perpendicular to the electron beam. Our broadband results allowed us to identify the processes that produced specific spectral features, while our high-resolution spectra allowed the experimental separation of features that are less than 2 eV apart. We have used the collisional radiative model NOMAD [2] aided by atomic data calculations by FAC [3] to interpret our observations and account for corrections. Experimental results were compared to the atomic database AtomDB, used to fit the galaxy cluster spectra. We found a number of measured features due to DR in lower charge state Ar ions not included in the database, close in energy to the identified line at 3.57 keV, and suggest their inclusion for improved interpretation and diagnosis of other astrophysical spectra.

Continuum radiation from active galactic nuclei: A statistical study

NASA Technical Reports Server (NTRS)

Isobe, T.; Feigelson, E. D.; Singh, K. P.; Kembhavi, A.

1986-01-01

The physics of the continuum spectrum of active galactic nuclei (AGNs) was examined using a large data set and rigorous statistical methods. A data base was constructed for 469 objects which include radio selected quasars, optically selected quasars, X-ray selected AGNs, BL Lac objects, and optically unidentified compact radio sources. Each object has measurements of its radio, optical, X-ray core continuum luminosity, though many of them are upper limits. Since many radio sources have extended components, the core component were carefully selected out from the total radio luminosity. With survival analysis statistical methods, which can treat upper limits correctly, these data can yield better statistical results than those previously obtained. A variety of statistical tests are performed, such as the comparison of the luminosity functions in different subsamples, and linear regressions of luminosities in different bands. Interpretation of the results leads to the following tentative conclusions: the main emission mechanism of optically selected quasars and X-ray selected AGNs is thermal, while that of BL Lac objects is synchrotron; radio selected quasars may have two different emission mechanisms in the X-ray band; BL Lac objects appear to be special cases of the radio selected quasars; some compact radio sources show the possibility of synchrotron self-Compton (SSC) in the optical band; and the spectral index between the optical and the X-ray bands depends on the optical luminosity.

Time-dependent Modeling of Pulsar Wind Nebulae

NASA Astrophysics Data System (ADS)

Vorster, M. J.; Tibolla, O.; Ferreira, S. E. S.; Kaufmann, S.

2013-08-01

A spatially independent model that calculates the time evolution of the electron spectrum in a spherically expanding pulsar wind nebula (PWN) is presented, allowing one to make broadband predictions for the PWN's non-thermal radiation. The source spectrum of electrons injected at the termination shock of the PWN is chosen to be a broken power law. In contrast to previous PWN models of a similar nature, the source spectrum has a discontinuity in intensity at the transition between the low- and high-energy components. To test the model, it is applied to the young PWN G21.5-0.9, where it is found that a discontinuous source spectrum can model the emission at all wavelengths better than a continuous one. The model is also applied to the unidentified sources HESS J1427-608 and HESS J1507-622. Parameters are derived for these two candidate nebulae that are consistent with the values predicted for other PWNe. For HESS J1427-608, a present day magnetic field of B age = 0.4 μG is derived. As a result of the small present day magnetic field, this source has a low synchrotron luminosity, while remaining bright at GeV/TeV energies. It is therefore possible to interpret HESS J1427-608 within the ancient PWN scenario. For the second candidate PWN HESS J1507-622, a present day magnetic field of B age = 1.7 μG is derived. Furthermore, for this candidate PWN a scenario is favored in the present paper in which HESS J1507-622 has been compressed by the reverse shock of the supernova remnant.

HESS J1741-302: a hidden accelerator in the Galactic plane

NASA Astrophysics Data System (ADS)

H.E.S.S. Collaboration; Abdalla, H.; Abramowski, A.; Aharonian, F.; Ait Benkhali, F.; Angüner, E. O.; Arakawa, M.; Armand, C.; Arrieta, M.; Backes, M.; Balzer, A.; Barnard, M.; Becherini, Y.; Becker Tjus, J.; Berge, D.; Bernhard, S.; Bernlöhr, K.; Blackwell, R.; Böttcher, M.; Boisson, C.; Bolmont, J.; Bonnefoy, S.; Bordas, P.; Bregeon, J.; Brun, F.; Brun, P.; Bryan, M.; Büchele, M.; Bulik, T.; Capasso, M.; Caroff, S.; Carosi, A.; Casanova, S.; Cerruti, M.; Chakraborty, N.; Chaves, R. C. G.; Chen, A.; Chevalier, J.; Colafrancesco, S.; Condon, B.; Conrad, J.; Davids, I. D.; Decock, J.; Deil, C.; Devin, J.; Dewilt, P.; Dirson, L.; Djannati-Ataï, A.; Donath, A.; Drury, L. O.'c.; Dyks, J.; Edwards, T.; Egberts, K.; Emery, G.; Ernenwein, J.-P.; Eschbach, S.; Farnier, C.; Fegan, S.; Fernandes, M. V.; Fiasson, A.; Fontaine, G.; Funk, S.; Füßling, M.; Gabici, S.; Gallant, Y. A.; Garrigoux, T.; Gaté, F.; Giavitto, G.; Glawion, D.; Glicenstein, J. F.; Gottschall, D.; Grondin, M.-H.; Hahn, J.; Haupt, M.; Hawkes, J.; Heinzelmann, G.; Henri, G.; Hermann, G.; Hinton, J. A.; Hofmann, W.; Hoischen, C.; Holch, T. L.; Holler, M.; Horns, D.; Ivascenko, A.; Iwasaki, H.; Jacholkowska, A.; Jamrozy, M.; Jankowsky, D.; Jankowsky, F.; Jingo, M.; Jouvin, L.; Jung-Richardt, I.; Kastendieck, M. A.; Katarzyński, K.; Katsuragawa, M.; Katz, U.; Kerszberg, D.; Khangulyan, D.; Khélifi, B.; King, J.; Klepser, S.; Klochkov, D.; Kluźniak, W.; Komin, Nu.; Kosack, K.; Krakau, S.; Kraus, M.; Krüger, P. P.; Laffon, H.; Lamanna, G.; Lau, J.; Lefaucheur, J.; Lemière, A.; Lemoine-Goumard, M.; Lenain, J.-P.; Leser, E.; Lohse, T.; Lorentz, M.; Liu, R.; López-Coto, R.; Lypova, I.; Malyshev, D.; Marandon, V.; Marcowith, A.; Mariaud, C.; Marx, R.; Maurin, G.; Maxted, N.; Mayer, M.; Meintjes, P. J.; Meyer, M.; Mitchell, A. M. W.; Moderski, R.; Mohamed, M.; Mohrmann, L.; Morå, K.; Moulin, E.; Murach, T.; Nakashima, S.; De Naurois, M.; Ndiyavala, H.; Niederwanger, F.; Niemiec, J.; Oakes, L.; O'Brien, P.; Odaka, H.; Ohm, S.; Ostrowski, M.; Oya, I.; Padovani, M.; Panter, M.; Parsons, R. D.; Pekeur, N. W.; Pelletier, G.; Perennes, C.; Petrucci, P.-O.; Peyaud, B.; Piel, Q.; Pita, S.; Poireau, V.; Prokhorov, D. A.; Prokoph, H.; Pühlhofer, G.; Punch, M.; Quirrenbach, A.; Raab, S.; Rauth, R.; Reimer, A.; Reimer, O.; Renaud, M.; De Los Reyes, R.; Rieger, F.; Rinchiuso, L.; Romoli, C.; Rowell, G.; Rudak, B.; Rulten, C. B.; Sahakian, V.; Saito, S.; Sanchez, D. A.; Santangelo, A.; Sasaki, M.; Schlickeiser, R.; Schüssler, F.; Schulz, A.; Schwanke, U.; Schwemmer, S.; Seglar-Arroyo, M.; Seyffert, A. S.; Shafi, N.; Shilon, I.; Shiningayamwe, K.; Simoni, R.; Sol, H.; Spanier, F.; Spir-Jacob, M.; Stawarz, Ł.; Steenkamp, R.; Stegmann, C.; Steppa, C.; Sushch, I.; Takahashi, T.; Tavernet, J.-P.; Tavernier, T.; Taylor, A. M.; Terrier, R.; Tibaldo, L.; Tiziani, D.; Tluczykont, M.; Trichard, C.; Tsirou, M.; Tsuji, N.; Tuffs, R.; Uchiyama, Y.; van der Walt, D. J.; van Eldik, C.; van Rensburg, C.; van Soelen, B.; Vasileiadis, G.; Veh, J.; Venter, C.; Viana, A.; Vincent, P.; Vink, J.; Voisin, F.; Völk, H. J.; Vuillaume, T.; Wadiasingh, Z.; Wagner, S. J.; Wagner, P.; Wagner, R. M.; White, R.; Wierzcholska, A.; Willmann, P.; Wörnlein, A.; Wouters, D.; Yang, R.; Zaborov, D.; Zacharias, M.; Zanin, R.; Zdziarski, A. A.; Zech, A.; Zefi, F.; Ziegler, A.; Zorn, J.; Żywucka, N.; NANTEN Collaboration; Enokiya, R.; Fukui, Y.; Hayakawa, T.; Okuda, T.; Torii, K.; Yamamoto, H.

2018-04-01

The H.E.S.S. Collaboration has discovered a new very high energy (VHE, E > 0.1 TeV) γ-ray source, HESS J1741-302, located in the Galactic plane. Despite several attempts to constrain its nature, no plausible counterpart has been found so far at X-ray and MeV/GeV γ-ray energies, and the source remains unidentified. An analysis of 145-h of observations of HESS J1741-302 at VHEs has revealed a steady and relatively weak TeV source ( 1% of the Crab Nebula flux), with a spectral index of Γ = 2.3 ± 0.2stat ± 0.2sys, extending to energies up to 10 TeV without any clear signature of a cut-off. In a hadronic scenario, such a spectrum implies an object with particle acceleration up to energies of several hundred TeV. Contrary to most H.E.S.S. unidentified sources, the angular size of HESS J1741-302 is compatible with the H.E.S.S. point spread function at VHEs, with an extension constrained to be below 0.068° at a 99% confidence level. The γ-ray emission detected by H.E.S.S. can be explained both within a hadronic scenario, due to collisions of protons with energies of hundreds of TeV with dense molecular clouds, and in a leptonic scenario, as a relic pulsar wind nebula, possibly powered by the middle-aged (20 kyr) pulsar PSR B1737-30. A binary scenario, related to the compact radio source 1LC 358.266+0.038 found to be spatially coincident with the best fit position of HESS J1741-302, is also envisaged.

HESS J1741-302: a hidden accelerator in the Galactic plane

DOE Office of Scientific and Technical Information (OSTI.GOV)

Abdalla, H.; Abramowski, A.; Aharonian, F.

The H.E.S.S. Collaboration has discovered a new very high energy (VHE, E > 0.1 TeV) γ-ray source, HESS J1741-302, located in the Galactic plane. Despite several attempts to constrain its nature, no plausible counterpart has been found so far at X-ray and MeV/GeV γ-ray energies, and the source remains unidentified. An analysis of 145-h of observations of HESS J1741-302 at VHEs has revealed a steady and relatively weak TeV source (~1% of the Crab Nebula flux), with a spectral index of Γ = 2.3 ± 0.2stat ± 0.2sys, extending to energies up to 10 TeV without any clear signature ofmore » a cut-off. In a hadronic scenario, such a spectrum implies an object with particle acceleration up to energies of several hundred TeV. Contrary to most H.E.S.S. unidentified sources, the angular size of HESS J1741-302 is compatible with the H.E.S.S. point spread function at VHEs, with an extension constrained to be below 0.068° at a 99% confidence level. The γ-ray emission detected by H.E.S.S. can be explained both within a hadronic scenario, due to collisions of protons with energies of hundreds of TeV with dense molecular clouds, and in a leptonic scenario, as a relic pulsar wind nebula, possibly powered by the middle-aged (20 kyr) pulsar PSR B1737-30. A binary scenario, related to the compact radio source 1LC 358.266+0.038 found to be spatially coincident with the best fit position of HESS J1741-302, is also envisaged.« less

HESS J1741-302: a hidden accelerator in the Galactic plane

DOE PAGES

Abdalla, H.; Abramowski, A.; Aharonian, F.; ...

2018-04-01

The H.E.S.S. Collaboration has discovered a new very high energy (VHE, E > 0.1 TeV) γ-ray source, HESS J1741-302, located in the Galactic plane. Despite several attempts to constrain its nature, no plausible counterpart has been found so far at X-ray and MeV/GeV γ-ray energies, and the source remains unidentified. An analysis of 145-h of observations of HESS J1741-302 at VHEs has revealed a steady and relatively weak TeV source (~1% of the Crab Nebula flux), with a spectral index of Γ = 2.3 ± 0.2stat ± 0.2sys, extending to energies up to 10 TeV without any clear signature ofmore » a cut-off. In a hadronic scenario, such a spectrum implies an object with particle acceleration up to energies of several hundred TeV. Contrary to most H.E.S.S. unidentified sources, the angular size of HESS J1741-302 is compatible with the H.E.S.S. point spread function at VHEs, with an extension constrained to be below 0.068° at a 99% confidence level. The γ-ray emission detected by H.E.S.S. can be explained both within a hadronic scenario, due to collisions of protons with energies of hundreds of TeV with dense molecular clouds, and in a leptonic scenario, as a relic pulsar wind nebula, possibly powered by the middle-aged (20 kyr) pulsar PSR B1737-30. A binary scenario, related to the compact radio source 1LC 358.266+0.038 found to be spatially coincident with the best fit position of HESS J1741-302, is also envisaged.« less

Characterization of bacterial diversity in an atrazine degrading enrichment culture and degradation of atrazine, cyanuric acid and biuret in industrial wastewater.

PubMed

Dutta, Anirban; Vasudevan, Venugopal; Nain, Lata; Singh, Neera

2016-01-01

An enrichment culture was used to study atrazine degradation in mineral salt medium (MSM) (T1), MSM+soil extract (1:1, v/v) (T2) and soil extract (T3). Results suggested that enrichment culture required soil extract to degrade atrazine, as after second sequential transfer only partial atrazine degradation was observed in T1 treatment while atrazine was completely degraded in T2 and T3 treatments even after fourth transfer. Culture independent polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) technique confirmed selective enrichment of genus Bacillus along with Pseudomonas and Burkholderia. Degradation of atrazine/metabolites in the industrial wastewater was studied at different initial concentrations of the contaminants [wastewater-water (v/v) ratio: T1, 1:9; T2, 2:8; T3, 3:7; T4, 5:5 and T5, undiluted effluent]. The initial concentrations of atrazine, cyanuric acid and biuret ranged between 5.32 and 53.92 µg mL(-1), 265.6 and 1805.2 µg mL(-1) and 1.85 and 16.12 µg mL(-1), respectively. The enrichment culture was able to completely degrade atrazine, cyanuric acid and biuret up to T4 treatment, while no appreciable degradation of contaminants was observed in the undiluted effluent (T5). Inability of enrichment culture to degrade atrazine/metabolites might be due to high concentrations of cyanuric acid. Therefore, a separate study on cyanuric acid degradation suggested: (i) no appreciable cyanuric acid degradation with accumulation of an unidentified metabolite in the medium where cyanuric acid was supplemented as the sole source of carbon and nitrogen; (ii) partial cyanuric acid degradation with accumulation of unidentified metabolite in the medium containing additional nitrogen source; and (iii) complete cyanuric acid degradation in the medium supplemented with an additional carbon source. This unidentified metabolite observed during cyanuric acid degradation and also detected in the enrichment culture inoculated wastewater samples, however, was degraded up to T4 treatments and was persistent in the T5 treatment. Probably, accumulation of this metabolite inhibited atrazine/cyanuric acid degradation by the enrichment culture in undiluted wastewater.

Partially autoionizing states of atomic oxygen

NASA Technical Reports Server (NTRS)

Samson, J. A. R.; Petrosky, V. E.

1974-01-01

Certain Rydberg states and an intershell transition of atomic oxygen were shown to partially autoionize, and to produce emission spectra competitive with autoionization. These states are forbidden to autoionize on the basis of LS coupling; but they were observed both in emission spectroscopy and in photoelectron spectroscopy. The results explain an unidentified structure in the 584 Angstrom He I atomic O spectrum observed by previous investigators.

Cryobacterium aureum sp. nov., a psychrophilic bacterium isolated from glacier ice collected from the ice tongue surface.

PubMed

Liu, Qing; Xin, Yu-Hua; Chen, Xiu-Ling; Liu, Hong-Can; Zhou, Yu-Guang; Chen, Wen-Xin

2018-04-01

A psychrophilic, Gram-stain-positive, rod-shaped bacterium, designated strain Hh31 T , was isolated from Xinjiang No. 1 Glacier in China. Strain Hh31 T was catalase-positive, oxidase-negative and able to grow at between 0-18 °C. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain Hh31 T belonged to the genus Cryobacterium and was most closely related to the type strains of Cryobacterium levicorallinum, Cryobacterium luteum and Cryobacterium flavum. DNA-DNA hybridization, calculation of average nucleotide identity and digital DNA-DNA hybridization revealed that strain Hh31 T was distinct from its closest phylogenetic neighbours. The major cellular fatty acids of strain Hh31 T were anteiso-C15 : 0, anteiso-C15 : 1, iso-C15:0, iso-C16 : 0 and anteiso-C17 : 0. The predominant menaquinones of strain Hh31 T were MK-9 and MK-10. The polar lipids consisted of diphosphatidylglycerol, phosphatidylglycerol, one unidentified phospholipid, one unidentified glycolipid and another unidentified lipid. Physiological tests such as carbon source utilization, showed phenotypic differentiation of strain Hh31 T from the closest related phylogenetic neighbours. Based on a polyphasic approach, a novel species, Cryobacterium aureum sp. nov., is proposed, with Hh31 T (=NBRC 107882 T =CGMCC 1.11213 T ) as the type strain.

Possible sources of nitrate in ground water at swine licensed-managed feeding operations in Oklahoma, 2001

USGS Publications Warehouse

Becker, Mark F.; Peter, Kathy D.; Masoner, Jason

2002-01-01

Samples collected and analyzed by the Oklahoma Department of Agriculture, Food, and Forestry from 1999 to 2001 determined that nitrate exceeded the U.S. Environmental Protection Agency maximum contaminant level for public drinking-water supplies of 10 milligrams per liter as nitrogen in 79 monitoring wells at 35 swine licensed-managed feeding operations (LMFO) in Oklahoma. The LMFOs are located in rural agricultural settings where long-term agriculture has potentially affected the ground-water quality in some areas. Land use prior to the construction of the LMFOs was assessed to evaluate the types of agricultural land use within a 500-meter radius of the sampled wells. Chemical and microbiological techniques were used to determine the possible sources of nitrate in water sampled from 10 wastewater lagoons and 79 wells. Samples were analyzed for dissolved major ions, dissolved trace elements, dissolved nutrients, nitrogen isotope ratios of nitrate and ammonia, wastewater organic compounds, and fecal coliform bacteria. Bacteria ribotyping analysis was done on selected samples to identify possible specific animal sources. A decision process was developed to identify the possible sources of nitrate. First, nitrogen isotope ratios were used to define sources as animal, mixed animal and fertilizer, or fertilizer. Second, wastewater organic compound detections, nitrogen-isotope ratios, fecal coliform bacteria detections, and ribotyping were used to refine the identification of possible sources as LFMO waste, fertilizer, or unidentified animal or mixtures of these sources. Additional evidence provided by ribotyping and wastewater organic compound data can, in some cases, specifically indicate the animal source. Detections of three or more wastewater organic compounds that are indicators of animal sources and detections of fecal coliform bacteria provided additional evidence of an animal source. LMFO waste was designated as a possible source of nitrate in water from 10 wells. The source of waste in water from five of those wells was determined through ribotyping, and the source of waste in water from the remaining five wells was determined by detections of three or more animal-waste compounds in the well samples. LMFO waste in the water from wells with unidentified animal source of nitrate does not indicate that LMFO waste was not the source, but indicated that multiple animal sources, including LMFO waste, may be the source of the nitrate.

Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets

PubMed Central

Griss, Johannes; Perez-Riverol, Yasset; Lewis, Steve; Tabb, David L.; Dianes, José A.; del-Toro, Noemi; Rurik, Marc; Walzer, Mathias W.; Kohlbacher, Oliver; Hermjakob, Henning; Wang, Rui; Vizcaíno, Juan Antonio

2016-01-01

Mass spectrometry (MS) is the main technology used in proteomics approaches. However, on average 75% of spectra analysed in an MS experiment remain unidentified. We propose to use spectrum clustering at a large-scale to shed a light on these unidentified spectra. PRoteomics IDEntifications database (PRIDE) Archive is one of the largest MS proteomics public data repositories worldwide. By clustering all tandem MS spectra publicly available in PRIDE Archive, coming from hundreds of datasets, we were able to consistently characterize three distinct groups of spectra: 1) incorrectly identified spectra, 2) spectra correctly identified but below the set scoring threshold, and 3) truly unidentified spectra. Using a multitude of complementary analysis approaches, we were able to identify less than 20% of the consistently unidentified spectra. The complete spectrum clustering results are available through the new version of the PRIDE Cluster resource (http://www.ebi.ac.uk/pride/cluster). This resource is intended, among other aims, to encourage and simplify further investigation into these unidentified spectra. PMID:27493588

Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets.

PubMed

Griss, Johannes; Perez-Riverol, Yasset; Lewis, Steve; Tabb, David L; Dianes, José A; Del-Toro, Noemi; Rurik, Marc; Walzer, Mathias W; Kohlbacher, Oliver; Hermjakob, Henning; Wang, Rui; Vizcaíno, Juan Antonio

2016-08-01

Mass spectrometry (MS) is the main technology used in proteomics approaches. However, on average 75% of spectra analysed in an MS experiment remain unidentified. We propose to use spectrum clustering at a large-scale to shed a light on these unidentified spectra. PRoteomics IDEntifications database (PRIDE) Archive is one of the largest MS proteomics public data repositories worldwide. By clustering all tandem MS spectra publicly available in PRIDE Archive, coming from hundreds of datasets, we were able to consistently characterize three distinct groups of spectra: 1) incorrectly identified spectra, 2) spectra correctly identified but below the set scoring threshold, and 3) truly unidentified spectra. Using a multitude of complementary analysis approaches, we were able to identify less than 20% of the consistently unidentified spectra. The complete spectrum clustering results are available through the new version of the PRIDE Cluster resource (http://www.ebi.ac.uk/pride/cluster). This resource is intended, among other aims, to encourage and simplify further investigation into these unidentified spectra.

The Einstein@Home Gamma-ray Pulsar Survey. I. Search Methods, Sensitivity, and Discovery of New Young Gamma-Ray Pulsars

NASA Astrophysics Data System (ADS)

Clark, C. J.; Wu, J.; Pletsch, H. J.; Guillemot, L.; Allen, B.; Aulbert, C.; Beer, C.; Bock, O.; Cuéllar, A.; Eggenstein, H. B.; Fehrmann, H.; Kramer, M.; Machenschalk, B.; Nieder, L.

2017-01-01

We report on the results of a recent blind search survey for gamma-ray pulsars in Fermi Large Area Telescope (LAT) data being carried out on the distributed volunteer computing system, Einstein@Home. The survey has searched for pulsations in 118 unidentified pulsar-like sources, requiring about 10,000 years of CPU core time. In total, this survey has resulted in the discovery of 17 new gamma-ray pulsars, of which 13 are newly reported in this work, and an accompanying paper. These pulsars are all young, isolated pulsars with characteristic ages between 12 kyr and 2 Myr, and spin-down powers between 1034 and 4 × 1036 erg s-1. Two of these are the slowest spinning gamma-ray pulsars yet known. One pulsar experienced a very large glitch {{Δ }}f/f≈ 3.5× {10}-6 during the Fermi mission. In this, the first of two associated papers, we describe the search scheme used in this survey, and estimate the sensitivity of our search to pulsations in unidentified Fermi-LAT sources. One such estimate results in an upper limit of 57% for the fraction of pulsed emission from the gamma-ray source associated with the Cas A supernova remnant, constraining the pulsed gamma-ray photon flux that can be produced by the neutron star at its center. We also present the results of precise timing analyses for each of the newly detected pulsars.

The global carbon dioxide budget

USGS Publications Warehouse

Sundquist, E.T.

1993-01-01

The increase in atmospheric CO2 levels during the last deglaciation was comparable in magnitude to the recent historical increase. However, global CO2 budgets for these changes reflect fundamental differences in rates and in sources and sinks. The modern oceans are a rapid net CO2 sink, whereas the oceans were a gradual source during the deglaciation. Unidentified terrestrial CO2 sinks are important uncertainties in both the deglacial and recent CO2 budgets. The deglacial CO2 budget represents a complexity of long-term dynamic behavior that is not adequately addressed by current models used to forecast future atmospheric CO2 levels.

Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice.

PubMed

Bessho-Uehara, Kanako; Wang, Diane R; Furuta, Tomoyuki; Minami, Anzu; Nagai, Keisuke; Gamuyao, Rico; Asano, Kenji; Angeles-Shim, Rosalyn B; Shimizu, Yoshihiro; Ayano, Madoka; Komeda, Norio; Doi, Kazuyuki; Miura, Kotaro; Toda, Yosuke; Kinoshita, Toshinori; Okuda, Satohiro; Higashiyama, Tetsuya; Nomoto, Mika; Tada, Yasuomi; Shinohara, Hidefumi; Matsubayashi, Yoshikatsu; Greenberg, Anthony; Wu, Jianzhong; Yasui, Hideshi; Yoshimura, Atsushi; Mori, Hitoshi; McCouch, Susan R; Ashikari, Motoyuki

2016-08-09

Domestication of crops based on artificial selection has contributed numerous beneficial traits for agriculture. Wild characteristics such as red pericarp and seed shattering were lost in both Asian (Oryza sativa) and African (Oryza glaberrima) cultivated rice species as a result of human selection on common genes. Awnedness, in contrast, is a trait that has been lost in both cultivated species due to selection on different sets of genes. In a previous report, we revealed that at least three loci regulate awn development in rice; however, the molecular mechanism underlying awnlessness remains unknown. Here we isolate and characterize a previously unidentified EPIDERMAL PATTERNING FACTOR-LIKE (EPFL) family member named REGULATOR OF AWN ELONGATION 2 (RAE2) and identify one of its requisite processing enzymes, SUBTILISIN-LIKE PROTEASE 1 (SLP1). The RAE2 precursor is specifically cleaved by SLP1 in the rice spikelet, where the mature RAE2 peptide subsequently induces awn elongation. Analysis of RAE2 sequence diversity identified a highly variable GC-rich region harboring multiple independent mutations underlying protein-length variation that disrupt the function of the RAE2 protein and condition the awnless phenotype in Asian rice. Cultivated African rice, on the other hand, retained the functional RAE2 allele despite its awnless phenotype. Our findings illuminate the molecular function of RAE2 in awn development and shed light on the independent domestication histories of Asian and African cultivated rice.

Towards a Standardized Line List for G 191-B2B and other DA Type Objects

NASA Astrophysics Data System (ADS)

Preval, S. P.; Barstow, M. A.; Holberg, J. B.; Dickinson, N. J.

2013-01-01

We present a comprehensive analysis of the far UV spectrum of G 191-B2B over the range of 900-1700Å using co-added data from the FUSE and STIS archives. While previous identifications made by Holberg et al. (2003) are reaffirmed in this work, it is found that many previously unidentified lines can now be attributed to Fe, Ni, and a few lighter metals. Future work includes extending this detailed analysis to a wider range of DA objects, in the expectation that a more complete analysis of their atmospheres can be realised.

Assimilation of organic and inorganic nutrients by Erica root fungi from the fynbos ecosystem.

PubMed

Bizabani, Christine; Dames, Joanna Felicity

2016-03-01

Erica dominate the fynbos ecosystem, which is characterized by acidic soils that are rich in organic matter. The ericaceae associate with ericoid mycorrhizal (ERM) fungi for survival. In this study fungal biomass accumulation in vitro was used to determine nutrient utilisation of various inorganic and organic substrates. This is an initial step towards establishment of the ecological roles of typical ERM fungi and other root fungi associated with Erica plants, with regard to host nutrition. Meliniomyces sp., Acremonium implicatum, Leohumicola sp., Cryptosporiopsis erica, Oidiodendron maius and an unidentified Helotiales fungus were selected from fungi previously isolated and identified from Erica roots. Sole nitrogen sources ammonium, nitrate, arginine and Bovine Serum Albumin (BSA) were tested. Meliniomyces and Leohumicola species were able to utilise BSA effectively. Phosphorus nutrition was tested using orthophosphate, sodium inositol hexaphosphate and DNA. Most isolates preferred orthophosphate. Meliniomyces sp. and A. implicatum were able to accumulate significant biomass using DNA. Carbon utilisation was tested using glucose, cellobiose, carboxymethylcellulose, pectin and tannic acid substrates. All fungal isolates produced high biomass on glucose and cellobiose. The ability to utilize organic nutrient sources in culture, illustrates their potential role of these fungi in host nutrition in the fynbos ecosystem. Copyright © 2015 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.

Software Analysis of Uncorrelated MS1 Peaks for Discovery of Post-Translational Modifications

NASA Astrophysics Data System (ADS)

Pascal, Bruce D.; West, Graham M.; Scharager-Tapia, Catherina; Flefil, Ricardo; Moroni, Tina; Martinez-Acedo, Pablo; Griffin, Patrick R.; Carvalloza, Anthony C.

2015-12-01

The goal in proteomics to identify all peptides in a complex mixture has been largely addressed using various LC MS/MS approaches, such as data dependent acquisition, SRM/MRM, and data independent acquisition instrumentation. Despite these developments, many peptides remain unsequenced, often due to low abundance, poor fragmentation patterns, or data analysis difficulties. Many of the unidentified peptides exhibit strong evidence in high resolution MS1 data and are frequently post-translationally modified, playing a significant role in biological processes. Proteomics Workbench (PWB) software was developed to automate the detection and visualization of all possible peptides in MS1 data, reveal candidate peptides not initially identified, and build inclusion lists for subsequent MS2 analysis to uncover new identifications. We used this software on existing data on the autophagy regulating kinase Ulk1 as a proof of concept for this method, as we had already manually identified a number of phosphorylation sites Dorsey, F. C. et al (J. Proteome. Res. 8(11), 5253-5263 (2009)). PWB found all previously identified sites of phosphorylation. The software has been made freely available at http://www.proteomicsworkbench.com .

The Backyard Worlds: Planet 9 Citizen Science Project

NASA Astrophysics Data System (ADS)

Faherty, Jacqueline K.; Kuchner, Marc; Schneider, Adam; Meisner, Aaron; Gagné, Jonathan; Filippazzo, Joeseph; Trouille, Laura; Backyard Worlds: Planet 9 Collaboration; Jacqueline Faherty

2018-01-01

In February of 2017 our team launched a new citizen science project entitled Backyard Worlds: Planet 9 to scan the cosmos for fast moving stars, brown dwarfs, and even planets. This Zooniverse website, BackyardWorlds.org, invites anyone with a computer or smartphone to flip through WISE images taken over a several year baseline and mark any point source that appears to move. This “blinking technique” is the same that Clyde Tombaugh discovered Pluto with over 80 years ago. In the first few days of our program we recruited over 30,000 volunteers. After 3/4 of a year with the program we have completed 30% of the sky and our participants have identified several hundred candidate movers. These include (1) over 20 candidate Y-type brown dwarfs, (2) a handful of new co-moving systems containing a previously unidentified low mass object and a known nearby star, (3) over 100 previously missed M dwarfs, (4) and more than 200 candidate L and T brown dwarfs, many of which occupy outlier positions on reduced proper motion diagrams. Our first publication credited four citizen scientists as co-authors. The Backyard Worlds: Planet 9 project is both scientifically fruitful and empowering for any mind across the globe that has ever wanted to participate in a discovery-driven astronomy research project.

New steroid 5alpha-reductase type I (SRD5A1) homologous sequences on human chromosomes 6 and 8.

PubMed

Eminović, I; Liović, M; Prezelj, J; Kocijancic, A; Rozman, D; Komel, R

2001-01-01

To date, two genes encoding 5alpha-reductase isoenzymes are known (type I, type II), and one type I pseudogene. The divergent localization of these genes and the still not fully understood function of the encoded enzymes as well as the perplexing results we obtained after sequencing PCR-amplified SRD5A1 gene fragments (out of genomic DNA), made us assume that, in addition to the known SRD5A1 gene, one or more different human 5alpha-reductase type I coding genes may exist. Our research provide the first evidence for the existence of two new SRD5A1 related, previously unidentified sequences in the human genome. These sequences which were localized to chromosomes 6 and 8 are highly homologous (> 99%) to SRD5A1, and also do not contain any deletions or insertions that are otherwise a characteristic of the SRD5API pseudogene. Our results imply that these sequences may be either coding parts of yet unknown, active SRD5A1 genes, and/or of previously unidentified pseudogenes. These findings additionally support data of Chen et al. who confirmed the existence of various SRD5A1 proteins in cultured human skin cells.

Aquatic Habitat Studies on the Lower Mississippi River, River Mile 480 to 530. Report 6. Larval Fish Studies-Pilot Report.

DTIC Science & Technology

1981-04-01

larval fish were collected: unidentified clupeids, unidentified cyprinids, Carpiodes spp., Menidia audens , Lepomis spp., unidentified centrarchids, and...bars, was rare in both abandoned channels and oxbow lakes. 69. Menidia audens and Morone spp. were common in the abandoned channel habitat and rare in

The ROSAT Deep Survey. 2; Optical Identification, Photometry and Spectra of X-Ray Sources in the Lockman Field

NASA Technical Reports Server (NTRS)

Schmidt, M.; Hasinger, G.; Gunn, J.; Schneider, D.; Burg, R.; Giacconi, R.; Lehmann, I.; MacKenty, J.; Truemper, J.; Zamorani, G.

1998-01-01

The ROSAT Deep Survey includes a complete sample of 50 X-ray sources with fluxes in the 0.5 - 2 keV band larger than 5.5 x 10(exp -15)erg/sq cm/s in the Lockman field (Hasinger et al., Paper 1). We have obtained deep broad-band CCD images of the field and spectra of many optical objects near the positions of the X-ray sources. We define systematically the process leading to the optical identifications of the X-ray sources. For this purpose, we introduce five identification (ID) classes that characterize the process in each case. Among the 50 X-ray sources, we identify 39 AGNs, 3 groups of galaxies, 1 galaxy and 3 galactic stars. Four X-ray sources remain unidentified so far; two of these objects may have an unusually large ratio of X-ray to optical flux.

Deinococcus metallilatus sp. nov. and Deinococcus carri sp. nov., isolated from a car air-conditioning system.

PubMed

Kim, Dong-Uk; Lee, Hyosun; Lee, Ji-Hyeong; Ahn, Jae-Hyung; Lim, Sangyong; Jeong, Sunwook; Park, So Yoon; Seong, Chi Nam; Ka, Jong-Ok

2015-09-01

Two bacterial strains, designated MA1002(T) and MA1003(T), were isolated from the air-conditioning system of a car. Cells of both strains were Gram-reaction-positive, non-motile, non-spore-forming coccoids, catalase- and oxidase-positive and UV-radiation resistant. The major fatty acids of strain MA1002(T) were iso-C17 : 0 and iso-C15 : 0 and those of strain MA1003(T) were iso-C16 : 0 and iso-C16 : 1 H. The polar lipid profile of MA1002(T) contained phosphatidylethanolamine, two unidentified phosphoglycolipids, an unidentified phospholipid, an unidentified aminophospholipid, an unidentified aminolipid and an unidentified lipid. MA1003(T) had three unidentified phosphoglycolipids, six unidentified phospholipids, two unidentified glycolipids and two unidentified polar lipids as the polar lipids. The G+C contents of the genomic DNA of MA1002(T) and MA1003(T) were 70.5 and 76.0 mol%, respectively. MK-8 was the predominant respiratory quinone for both strains. 16S rRNA gene sequence analysis showed that strain MA1002(T) was phylogenetically related to Deinococcus apachensis DSM 19763(T), D. geothermalis DSM 11300(T), D. aerius TR0125(T) and D. aetherius ST0316(T) (92.9, 92.6, 92.0 and 91.9% sequence similarity, respectively), and MA1003(T) showed the highest sequence similarity to Deinococcus hopiensis KR-140(T) (92.9%) and D. xinjiangensis X-82(T) (91.4%). The results of genotypic and phenotypic characterizations showed that both strains could be distinguished from phylogenetically related species, and that the strains represented novel species within the genus Deinococcus, for which we propose the names Deinococcus metallilatus sp. nov. (type strain MA1002(T) = KACC 17964(T) = NBRC 110141(T)) and Deinococcus carri sp. nov. (type strain is MA1003(T) = KACC 17965(T) = NBRC 110142(T)).

Crowd-sourced pictures geo-localization method based on street view images and 3D reconstruction

NASA Astrophysics Data System (ADS)

Cheng, Liang; Yuan, Yi; Xia, Nan; Chen, Song; Chen, Yanming; Yang, Kang; Ma, Lei; Li, Manchun

2018-07-01

People are increasingly becoming accustomed to taking photos of everyday life in modern cities and uploading them on major photo-sharing social media sites. These sites contain numerous pictures, but some have incomplete or blurred location information. The geo-localization of crowd-sourced pictures enriches the information contained therein, and is applicable to activities such as urban construction, urban landscape analysis, and crime tracking. However, geo-localization faces huge technical challenges. This paper proposes a method for large-scale geo-localization of crowd-sourced pictures. Our approach uses structured, organized Street View images as a reference dataset and employs a three-step strategy of coarse geo-localization by image retrieval, selecting reliable matches by image registration, and fine geo-localization by 3D reconstruction to attach geographic tags to pictures from unidentified sources. In study area, 3D reconstruction based on close-range photogrammetry is used to restore the 3D geographical information of the crowd-sourced pictures, resulting in the proposed method improving the median error from 256.7 m to 69.0 m, and the percentage of the geo-localized query pictures under a 50 m error from 17.2% to 43.2% compared with the previous method. Another discovery using the proposed method is that, in respect of the causes of reconstruction error, closer distances from the cameras to the main objects in query pictures tend to produce lower errors and the component of error parallel to the road makes a more significant contribution to the Total Error. The proposed method is not limited to small areas, and could be expanded to cities and larger areas owing to its flexible parameters.

ISOCAM observations of the Chamaeleon I dark cloud

NASA Astrophysics Data System (ADS)

Persi, P.; Marenzi, A. R.; Olofsson, G.; Kaas, A. A.; Nordh, L.; Huldtgren, M.; Abergel, A.; André, P.; Bontemps, S.; Boulanger, F.; Burggdorf, M.; Casali, M. M.; Cesarsky, C. J.; Copet, E.; Davies, J.; Falgarone, E.; Montmerle, T.; Perault, M.; Prusti, T.; Puget, J. L.; Sibille, F.

2000-05-01

We present the results of an ISOCAM survey of the Chamaeleon I dark cloud conducted in two broad-band filters at 6.7 and 14.3 mu m. In an area of 0.59 sq.deg. we have detected a total of 282 mid-IR sources with 103 sources observed in both filters. Combining the ISOCAM observations with the I, J, and K_s data obtained with DENIS, we have found 108 pre-main-sequence (PMS) stars in the region, of which 34 were previously unidentified. Several of these newly discovered young stellar objects are relatively faint suggesting a population in Cha I of very low mass objects that probably includes brown dwarfs in their early contraction phases. Finally, most of the PMS stars show the spectral index computed between 2.2 and 14.3 mu m typical of Class II sources. The luminosity function (LF) derived for our detected PMS stars is discussed. ISO is an ESA project with instruments funded by ESA Member States (especially the PI countries: France, Germany, the Netherlands and the United Kingdom) and with the participation of ISAS and NASA. Tables 1 and 2 are only available in electronic form at the CDS via anonymous ftp to cdsarc.u-strasbg.fr (130.79.128.5) or via http://cdsweb.u-strasbg.fr/Abstract.html Tables 3 and 4 are only available with the on-line publication at http://link.springer.de/link/service/journals/00230/

Stable Isotope-Assisted Metabolic Profiling Reveals Growth Mode Dependent Differential Metabolism and Multiple Catabolic Pathways of l-Phenylalanine in Rubrivivax benzoatilyticus JA2.

PubMed

Mekala, Lakshmi Prasuna; Mohammed, Mujahid; Chintalapati, Sasikala; Chintalapati, Venkata Ramana

2018-01-05

Anoxygenic phototrophic bacteria are metabolically versatile and survive under different growth modes using diverse organic compounds, yet their metabolic diversity is largely unexplored. In the present study, we employed stable-isotope-assisted metabolic profiling to unravel the l-phenylalanine catabolism in Rubrivivax benzoatilyticus JA2 under varying growth modes. Strain JA2 grows under anaerobic and aerobic conditions by utilizing l-phenylalanine as a nitrogen source. Furthermore, ring-labeled 13 C 6 -phenylalanine feeding followed by liquid chromatography-mass spectrometry exometabolite profiling revealed 60 labeled metabolic features (M + 6, M + 12, and M + 18) derived solely from l-phenylalanine, of which 11 were identified, 7 putatively identified, and 42 unidentified under anaerobic and aerobic conditions. However, labeled metabolites were significantly higher in aerobic compared to anaerobic conditions. Furthermore, detected metabolites and enzyme activities indicated multiple l-phenylalanine catabolic routes mainly Ehrlich, homogentisate-dependent melanin, benzenoid, and unidentified pathways operating under anaerobic and aerobic conditions in strain JA2. Interestingly, the study indicated l-phenylalanine-dependent and independent benzenoid biosynthesis in strain JA2 and a differential flux of l-phenylalanine to Ehrlich and benzenoid pathways under anaerobic and aerobic conditions. Additionally, unidentified labeled metabolites strongly suggest the presence of unknown phenylalanine catabolic routes in strain JA2. Overall, the study uncovered the l-phenylalanine catabolic diversity in strain JA2 and demonstrated the potential of stable isotope-assisted metabolomics in unraveling the hidden metabolic repertoire.

Ischemic stroke after use of the synthetic marijuana “spice”

PubMed Central

Freeman, Melissa J.; Rose, David Z.; Myers, Martin A.; Gooch, Clifton L.; Bozeman, Andrea C.

2013-01-01

Objectives: To report and associate acute cerebral infarctions in 2 young, previously healthy siblings with use of the street drug known as “spice” (a synthetic marijuana product, also known as “K2”), which they independently smoked before experiencing acute embolic-appearing ischemic strokes. Methods: We present history, physical examination, laboratory data, cerebrovascular imaging, echocardiogram, ECG, and hospital course of these patients. Results: We found that in both siblings spice was obtained from the same source. The drug was found to contain the schedule I synthetic cannabinoid JWH-018. Full stroke workup was unrevealing of a stroke etiology; urine drug screen was positive for marijuana. Conclusions: We found that our 2 patients who smoked the street drug spice had a temporal association with symptoms of acute cerebral infarction. This association may be confounded by contaminants in the product consumed (i.e., marijuana or an unidentified toxin) or by an unknown genetic mechanism. The imaging of both patients suggests an embolic etiology, which is consistent with reports of serious adverse cardiac events with spice use, including tachyarrhythmias and myocardial infarctions. PMID:24212384

Adaptive Optics Imaging Survey of Luminous Infrared Galaxies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Laag, E A; Canalizo, G; van Breugel, W

2006-03-13

We present high resolution imaging observations of a sample of previously unidentified far-infrared galaxies at z < 0.3. The objects were selected by cross-correlating the IRAS Faint Source Catalog with the VLA FIRST catalog and the HST Guide Star Catalog to allow for adaptive optics observations. We found two new ULIGs (with L{sub FIR} {ge} 10{sup 12} L{sub {circle_dot}}) and 19 new LIGs (with L{sub FIR} {ge} 10{sup 11} L{sub {circle_dot}}). Twenty of the galaxies in the sample were imaged with either the Lick or Keck adaptive optics systems in H or K{prime}. Galaxy morphologies were determined using the twomore » dimensional fitting program GALFIT and the residuals examined to look for interesting structure. The morphologies reveal that at least 30% are involved in tidal interactions, with 20% being clear mergers. An additional 50% show signs of possible interaction. Line ratios were used to determine powering mechanism; of the 17 objects in the sample showing clear emission lines--four are active galactic nuclei and seven are starburst galaxies. The rest exhibit a combination of both phenomena.« less

A novel GABAergic afferent input to the pontine reticular formation: the mesopontine GABAergic column.

PubMed

Liang, Chang-Lin; Marks, Gerald A

2009-11-10

Pharmacological manipulations of gamma-aminobutyric acid (GABA) neurotransmission in the nucleus pontis oralis (PnO) of the rat brainstem produce alterations in sleep/wake behavior. Local applications of GABA(A) receptor antagonists and agonists increase REM sleep and wake, respectively. These findings support a role for GABAergic mechanisms of the PnO in the control of arousal state. We have been investigating sources of GABA innervation of the PnO that may interact with local GABA(A) receptors in the control of state. Utilizing a retrograde tracer, cholera toxin-B subunit (CTb), injected into the PnO and dual-label immunohistochemistry with an antibody against glutamic acid decarboxalase-67 (GAD67), we report on a previously unidentified GABAergic neuronal population projecting to the contralateral PnO appearing as a column of cells, with long-axis in the sagittal plane, extending through the midbrain and pons. We refer to these neurons as the mesopontine GABAergic column (MPGC). The contiguous, columnar, anatomical distribution suggests operation as a functional neural system, which may influence expression of REM sleep, wake and other behaviors subserved by the PnO.

THE EINSTEIN@HOME GAMMA-RAY PULSAR SURVEY. I. SEARCH METHODS, SENSITIVITY, AND DISCOVERY OF NEW YOUNG GAMMA-RAY PULSARS

DOE PAGES

Clark, C. J.; Wu, J.; Pletsch, H. J.; ...

2017-01-05

Here, we report on the results of a recent blind search survey for gamma-ray pulsars in Fermi Large Area Telescope (LAT) data being carried out on the distributed volunteer computing system, Einstein@Home. The survey has searched for pulsations in 118 unidentified pulsar-like sources, requiring about 10,000 years of CPU core time. In total, this survey has resulted in the discovery of 17 new gamma-ray pulsars, of which 13 are newly reported in this work, and an accompanying paper. These pulsars are all young, isolated pulsars with characteristic ages between 12 kyr and 2 Myr, and spin-down powers between 10 34 and 4 × 10 36 erg s -1. Two of these are the slowest spinning gamma-ray pulsars yet known. One pulsar experienced a very large glitchmore » $${\\rm{\\Delta }}f/f\\approx 3.5\\times {10}^{-6}$$ during the Fermi mission. In this, the first of two associated papers, we describe the search scheme used in this survey, and estimate the sensitivity of our search to pulsations in unidentified Fermi-LAT sources. One such estimate results in an upper limit of 57% for the fraction of pulsed emission from the gamma-ray source associated with the Cas A supernova remnant, constraining the pulsed gamma-ray photon flux that can be produced by the neutron star at its center. Lastly, we also present the results of precise timing analyses for each of the newly detected pulsars.« less

THE EINSTEIN@HOME GAMMA-RAY PULSAR SURVEY. I. SEARCH METHODS, SENSITIVITY, AND DISCOVERY OF NEW YOUNG GAMMA-RAY PULSARS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Clark, C. J.; Wu, J.; Pletsch, H. J.

Here, we report on the results of a recent blind search survey for gamma-ray pulsars in Fermi Large Area Telescope (LAT) data being carried out on the distributed volunteer computing system, Einstein@Home. The survey has searched for pulsations in 118 unidentified pulsar-like sources, requiring about 10,000 years of CPU core time. In total, this survey has resulted in the discovery of 17 new gamma-ray pulsars, of which 13 are newly reported in this work, and an accompanying paper. These pulsars are all young, isolated pulsars with characteristic ages between 12 kyr and 2 Myr, and spin-down powers between 10 34 and 4 × 10 36 erg s -1. Two of these are the slowest spinning gamma-ray pulsars yet known. One pulsar experienced a very large glitchmore » $${\\rm{\\Delta }}f/f\\approx 3.5\\times {10}^{-6}$$ during the Fermi mission. In this, the first of two associated papers, we describe the search scheme used in this survey, and estimate the sensitivity of our search to pulsations in unidentified Fermi-LAT sources. One such estimate results in an upper limit of 57% for the fraction of pulsed emission from the gamma-ray source associated with the Cas A supernova remnant, constraining the pulsed gamma-ray photon flux that can be produced by the neutron star at its center. Lastly, we also present the results of precise timing analyses for each of the newly detected pulsars.« less

What remains after 2 months of starvation? Analysis of sequestered algae in a photosynthetic slug, Plakobranchus ocellatus (Sacoglossa, Opisthobranchia), by barcoding.

PubMed

Christa, Gregor; Wescott, Lily; Schäberle, Till F; König, Gabriele M; Wägele, Heike

2013-02-01

The sacoglossan sea slug, Plakobranchus ocellatus, is a so-called long-term retention form that incorporates chloroplasts for several months and thus is able to starve while maintaining photosynthetic activity. Little is known regarding the taxonomy and food sources of this sacoglossan, but it is suggested that P. ocellatus is a species complex and feeds on a broad variety of Ulvophyceae. In particular, we analysed specimens from the Philippines and starved them under various light conditions (high light, low light and darkness) and identified the species of algal food sources depending on starvation time and light treatment by means of DNA-barcoding using for the first time the combination of two algal chloroplast markers, rbcL and tufA. Comparison of available CO1 and 16S sequences of specimens from various localities indicate a species complex with likely four distinct clades, but food analyses do not indicate an ecological separation of the investigated clades into differing foraging strategies. The combined results from both algal markers suggest that, in general, P. ocellatus has a broad food spectrum, including members of the genera Halimeda, Caulerpa, Udotea, Acetabularia and further unidentified algae, with an emphasis on H. macroloba. Independent of the duration of starvation and light exposure, this algal species and a further unidentified Halimeda species seem to be the main food source of P. ocellatus from the Philippines. It is shown here that at least two (or possibly three) barcode markers are required to cover the entire food spectrum in future analyses of Sacoglossa.

The intermediate wavelength magnetic anomaly field of the north Pacific and possible source distributions

NASA Technical Reports Server (NTRS)

Labrecque, J. L.; Cande, S. C.; Jarrard, R. D. (Principal Investigator)

1983-01-01

A technique that eliminates external field sources and the effects of strike aliasing was used to extract from marine survey data the intermediate wavelength magnetic anomaly field for (B) in the North Pacific. A strong correlation exists between this field and the MAGSAT field although a directional sensitivity in the MAGSAT field can be detected. The intermediate wavelength field is correlated to tectonic features. Island arcs appear as positive anomalies of induced origin likely due to variations in crustal thickness. Seamount chains and oceanic plateaus also are manifested by strong anomalies. The primary contribution to many of these anomalies appears to be due to a remanent magnetization. The source parameters for the remainder of these features are presently unidentified ambiguous. Results indicate that the sea surface field is a valuable source of information for secular variation analysis and the resolution of intermediate wavelength source parameters.

Eight previously unidentified mutations found in the OA1 ocular albinism gene

PubMed Central

Mayeur, Hélène; Roche, Olivier; Vêtu, Christelle; Jaliffa, Carolina; Marchant, Dominique; Dollfus, Hélène; Bonneau, Dominique; Munier, Francis L; Schorderet, Daniel F; Levin, Alex V; Héon, Elise; Sutherland, Joanne; Lacombe, Didier; Said, Edith; Mezer, Eedy; Kaplan, Josseline; Dufier, Jean-Louis; Marsac, Cécile; Menasche, Maurice; Abitbol, Marc

2006-01-01

Background Ocular albinism type 1 (OA1) is an X-linked ocular disorder characterized by a severe reduction in visual acuity, nystagmus, hypopigmentation of the retinal pigmented epithelium, foveal hypoplasia, macromelanosomes in pigmented skin and eye cells, and misrouting of the optical tracts. This disease is primarily caused by mutations in the OA1 gene. Methods The ophthalmologic phenotype of the patients and their family members was characterized. We screened for mutations in the OA1 gene by direct sequencing of the nine PCR-amplified exons, and for genomic deletions by PCR-amplification of large DNA fragments. Results We sequenced the nine exons of the OA1 gene in 72 individuals and found ten different mutations in seven unrelated families and three sporadic cases. The ten mutations include an amino acid substitution and a premature stop codon previously reported by our team, and eight previously unidentified mutations: three amino acid substitutions, a duplication, a deletion, an insertion and two splice-site mutations. The use of a novel Taq polymerase enabled us to amplify large genomic fragments covering the OA1 gene. and to detect very likely six distinct large deletions. Furthermore, we were able to confirm that there was no deletion in twenty one patients where no mutation had been found. Conclusion The identified mutations affect highly conserved amino acids, cause frameshifts or alternative splicing, thus affecting folding of the OA1 G protein coupled receptor, interactions of OA1 with its G protein and/or binding with its ligand. PMID:16646960

Forensic DNA typing from teeth using demineralized root tips.

PubMed

Corrêa, Heitor Simões Dutra; Pedro, Fabio Luis Miranda; Volpato, Luiz Evaristo Ricci; Pereira, Thiago Machado; Siebert Filho, Gilberto; Borges, Álvaro Henrique

2017-11-01

Teeth are widely used samples in forensic human genetic identification due to their persistence and practical sampling and processing. Their processing, however, has changed very little in the last 20 years, usually including powdering or pulverization of the tooth. The objective of this study was to present demineralized root tips as DNA sources while, at the same time, not involving powdering the samples or expensive equipment for teeth processing. One to five teeth from each of 20 unidentified human bodies recovered from midwest Brazil were analyzed. Whole teeth were demineralized in EDTA solution with daily solution change. After a maximum of approximately seven days, the final millimeters of the root tip was excised. This portion of the sample was used for DNA extraction through a conventional organic protocol. DNA quantification and STR amplification were performed using commercial kits followed by capillary electrophoresis on 3130 or 3500 genetic analyzers. For 60% of the unidentified bodies (12 of 20), a full genetic profile was obtained from the extraction of the first root tip. By the end of the analyses, full genetic profiles were obtained for 85% of the individuals studied, of which 80% were positively identified. This alternative low-tech approach for postmortem teeth processing is capable of extracting DNA in sufficient quantity and quality for forensic casework, showing that root tips are viable nuclear DNA sources even after demineralization. Copyright © 2017 Elsevier B.V. All rights reserved.

Use of stable carbon and nitrogen isotopes to trace the larval striped bass food chain in the Sacramento-San Joaquin Estuary, California, April to September 1985

USGS Publications Warehouse

Rast, Walter; Sutton, J.E.

1989-01-01

To assess one potential cause for the decline of the striped bass fishery in the Sacramento-San Joaquin Estuary, stable carbon and nitrogen isotope ratios were used to examine the trophic structures of the larval striped bass food chain, and to trace the flux of these elements through the food chain components. Study results generally confirm a food chain consisting of the elements, phytoplankton/detritus-->zooplankton/Neomysis shrimp-->larval striped bass. The stable isotope ratios generally become more positive as one progresses from the lower to the higher trophic level food chain components, and no unusual trophic structure was found in the food chain. However, the data indicate an unidentified consumer organism occupying an intermediate position between the lower and higher trophic levels of the larval striped bass food chain. Based on expected trophic interactions, this unidentified consumer would have a stable carbon isotope ratio of about 28/mil and a stable nitrogen isotope ratio of about 8/mi. Three possible feeding stages for larval striped bass also were identified, based on their lengths. The smallest length fish seem to subsist on their yolk sac remnants, and the largest length fish subsist on Neomysis shrimp and zooplankton. The intermediate-length fish represent a transition stage between primary food sources and/or use of a mixture of food sources. (USGS)

Ceramide synthase inhibition by fumonisin B1 causes accumulation of 1-deoxy-sphinganine: a novel category of bioactive 1-deoxy-sphingoid bases and 1-deoxy-dihydroceramides biosynthesized by mammalian cell lines and animals

USDA-ARS?s Scientific Manuscript database

Fumonisin B1 (FB1) is a mycotoxin that inhibits ceramide synthases (CerS) and causes kidney and liver toxicity and other disease. Inhibition of CerS by FB1 increases sphinganine (Sa), Sa 1-phosphate and a previously unidentified metabolite. Analysis of the latter by quadrupole-time-of-flight mass ...

Crystal growth and magnetic characterization of a tetragonal polymorph of NiNb2O6

NASA Astrophysics Data System (ADS)

Munsie, T. J. S.; Millington, A.; Dube, P. A.; Dabkowska, H. A.; Britten, J.; Luke, G. M.; Greedan, J. E.

2016-04-01

A previously unidentified polymorph of nickel niobate, NiNb2O6, was grown and stabilized in single crystalline form using an optical floating zone furnace. Key parameters of the growth procedure involved use of a slight excess of NiO (1.2% by mol), an O2 atmosphere and a growth rate of 25 mm/h. The resulting boule consisted of a polycrystalline exterior shell of the columbite structure - columbite is the thermodynamically stable form of NiNb2O6 under ambient conditions - and a core region consisting of transparent yellow-green single crystals up to 5 mm×2 mm×1 mm in dimension of the previously unidentified phase. The crystal structure, solved from single crystal x-ray diffraction data, is described in the P42/n space group. Interestingly, this is not a subgroup of P42/mnm, the rutile space group. The Ni2+ ions form layers which are displaced such that interlayer magnetic frustration is anticipated. Magnetic susceptibility data shows a broad maximum at approximately 22 K and evidence for long range antiferromagnetic order at approximately 14 K, obtained by Fisher heat capacity analysis as well as heat capacity measurements. The susceptibility data for T > 25 K are well fit by a square lattice S = 1 model, consistent with the Ni sublattice topology.

Chromosomal Rearrangements as Barriers to Genetic Homogenization between Archaic and Modern Humans

PubMed Central

Rogers, Rebekah L.

2015-01-01

Chromosomal rearrangements, which shuffle DNA throughout the genome, are an important source of divergence across taxa. Using a paired-end read approach with Illumina sequence data for archaic humans, I identify changes in genome structure that occurred recently in human evolution. Hundreds of rearrangements indicate genomic trafficking between the sex chromosomes and autosomes, raising the possibility of sex-specific changes. Additionally, genes adjacent to genome structure changes in Neanderthals are associated with testis-specific expression, consistent with evolutionary theory that new genes commonly form with expression in the testes. I identify one case of new-gene creation through transposition from the Y chromosome to chromosome 10 that combines the 5′-end of the testis-specific gene Fank1 with previously untranscribed sequence. This new transcript experienced copy number expansion in archaic genomes, indicating rapid genomic change. Among rearrangements identified in Neanderthals, 13% are transposition of selfish genetic elements, whereas 32% appear to be ectopic exchange between repeats. In Denisovan, the pattern is similar but numbers are significantly higher with 18% of rearrangements reflecting transposition and 40% ectopic exchange between distantly related repeats. There is an excess of divergent rearrangements relative to polymorphism in Denisovan, which might result from nonuniform rates of mutation, possibly reflecting a burst of transposable element activity in the lineage that led to Denisovan. Finally, loci containing genome structure changes show diminished rates of introgression from Neanderthals into modern humans, consistent with the hypothesis that rearrangements serve as barriers to gene flow during hybridization. Together, these results suggest that this previously unidentified source of genomic variation has important biological consequences in human evolution. PMID:26399483

A Clinical and Epidemiological Investigation of the First Reported Human Infection With the Zoonotic Parasite Trypanosoma evansi in Southeast Asia

PubMed Central

Van Vinh Chau, Nguyen; Buu Chau, Le; Desquesnes, Marc; Herder, Stephane; Phu Huong Lan, Nguyen; Campbell, James I.; Van Cuong, Nguyen; Yimming, Benjarat; Chalermwong, Piangjai; Jittapalapong, Sathaporn; Ramon Franco, Jose; Tri Tue, Ngo; Rabaa, Maia A.; Carrique-Mas, Juan; Pham Thi Thanh, Tam; Tran Vu Thieu, Nga; Berto, Alessandra; Thi Hoa, Ngo; Van Minh Hoang, Nguyen; Canh Tu, Nguyen; Khac Chuyen, Nguyen; Wills, Bridget; Tinh Hien, Tran; Thwaites, Guy E.; Yacoub, Sophie; Baker, Stephen

2016-01-01

Background. Trypanosoma is a genus of unicellular parasitic flagellate protozoa. Trypanosoma brucei species and Trypanosoma cruzi are the major agents of human trypanosomiasis; other Trypanosoma species can cause human disease, but are rare. In March 2015, a 38-year-old woman presented to a healthcare facility in southern Vietnam with fever, headache, and arthralgia. Microscopic examination of blood revealed infection with Trypanosoma. Methods. Microscopic observation, polymerase chain reaction (PCR) amplification of blood samples, and serological testing were performed to identify the infecting species. The patient's blood was screened for the trypanocidal protein apolipoprotein L1 (APOL1), and a field investigation was performed to identify the zoonotic source. Results. PCR amplification and serological testing identified the infecting species as Trypanosoma evansi. Despite relapsing 6 weeks after completing amphotericin B therapy, the patient made a complete recovery after 5 weeks of suramin. The patient was found to have 2 wild-type APOL1 alleles and a normal serum APOL1 concentration. After responsive animal sampling in the presumed location of exposure, cattle and/or buffalo were determined to be the most likely source of the infection, with 14 of 30 (47%) animal blood samples testing PCR positive for T. evansi. Conclusions. We report the first laboratory-confirmed case of T. evansi in a previously healthy individual without APOL1 deficiency, potentially contracted via a wound while butchering raw beef, and successfully treated with suramin. A linked epidemiological investigation revealed widespread and previously unidentified burden of T. evansi in local cattle, highlighting the need for surveillance of this infection in animals and the possibility of further human cases. PMID:26908809

Further biogeochemical characterization of a trichloroethene-contaminated fractured dolomite aquifer: Electron source and microbial communities involved in reductive dechlorination

USGS Publications Warehouse

Hohnstock-Ashe, A. M.; Plummer, S.M.; Yager, R.M.; Baveye, P.; Madsen, E.L.

2001-01-01

A recent article presented geochemical and microbial evidence establishing metabolic adaptation to and in-situ reductive dechlorination of trichloroethene (TCE) in a fractured dolomite aquifer. This study was designed to further explore site conditions and microbial populations and to explain previously reported enhancement of reductive dechlorination by the addition of pulverized dolomite to laboratory microcosms. A survey of groundwater geochemical parameters (chlorinated ethenes, ethene, H2, CH4, DIC, DOC, and ??13C values for CH4, DIC, and DOC) indicated that in situ reductive dechlorination was ongoing and that an unidentified pool of organic carbon was contributing, likely via microbial respiration, to the large and relatively light onsite DIC pool. Petroleum hydrocarbons associated with the dolomite rock were analyzed by GC/MS and featured a characteristically low ??13C value. Straight chain hydrocarbons were extracted from the dolomite previously found to stimulate reductive dechlorination; these were particularly depleted in hexadecane (HD). Thus, we hypothesized that HD and related hydrocarbons might be anaerobically respired and serve both as the source of onsite DIC and support reductive dechlorination of TCE. Microcosms amended with pulverized dolomite demonstrated reductive dechlorination, whereas a combusted dolomite amendment did not. HD-amended microcosms were also inactive. Therefore, the stimulatory factor in the pulverized dolomite was heat labile, but that component was not HD. Amplified Ribosomal DNA Restriction Analysis (ARDRA) of the microbial populations in well waters indicated that a relatively low diversity, sulfur-transforming community outside the plume was shifted toward a high diversity community including Dehalococcoides ethenogenes-type microorganisms inside the zone of contamination. These observations illustrate biogeochemical intricacies of in situ reductive dechlorination reactions.

An investigation of the growing number of deaths of unidentified people in Russia

PubMed Central

Andreev, Evgueni; Pridemore, William Alex; Shkolnikov, Vladimir M.; Antonova, Olga I.

2008-01-01

Background We examined mortality among working-age Russian men whose identity could not be determined, focusing on where and how they died. Methods Employing micro-data from deaths that occurred in Izhevsk (Ural region) between June 2004 and September 2005, we analysed the characteristics of decedent men aged 25–54 (n= 2158). Differences between completely identified (n= 1699) and unidentified deaths (n= 282) were compared via logistic regression. Data on all deaths in Russia in 2002 were used for supplemental comparisons. Results We found that relative to identified men, unidentified men were at a higher risk of death from exposure to natural cold, violence, alcoholic cardiomyopathy, acute respiratory infections and poisonings. Our results also revealed that alcohol played an important role in the mortality of unidentified men. The places and causes of death among these unidentified men provide substantial evidence of their homelessness and social isolation. Conclusion The increase in deaths among unidentified men of working-age indicates the emergence of a health threat associated with homelessness and social marginalization. This vulnerable group is exposed to different levels and causes of mortality compared with the larger population and represent a new challenge that requires serious and immediate scholarly attention and policy responses. PMID:18160388

Rapid screening for human-pathogenic Mucorales using rolling circle amplification.

PubMed

Dolatabadi, S; Najafzadeh, M J; de Hoog, G S

2014-12-01

Mucormycosis has emerged as a relatively common severe mycosis in patients with haematological and allogeneic stem cell transplantation. Source of transmission is from unidentified sources in the environment. Early diagnosis of infection and its source of contamination are paramount for rapid and appropriate therapy. In this study, rolling circle amplification (RCA) is introduced as a sensitive, specific and reproducible isothermal DNA amplification technique for rapid molecular identification of six of the most virulent species (Rhizopus microsporus, R. arrhizus var. arrhizus, R. arrhizus var. delemar, Mucor irregularis, Mucor circinelloides, Lichtheimia ramosa, Lichtheimia corymbifera). DNAs of target species were successfully amplified, with no cross reactivity between species. RCA can be considered as a rapid detection method with high specificity and sensitivity, suitable for large screening. © 2014 Blackwell Verlag GmbH.

Teaching for All? Teach For America’s Effects across the Distribution of Student Achievement

PubMed Central

Penner, Emily K.

2016-01-01

This paper examines the effect of Teach For America (TFA) on the distribution of student achievement in elementary school. It extends previous research by estimating quantile treatment effects (QTE) to examine how student achievement in TFA and non-TFA classrooms differs across the broader distribution of student achievement. It also updates prior distributional work on TFA by correcting for previously unidentified missing data and estimating unconditional, rather than conditional QTE. Consistent with previous findings, results reveal a positive impact of TFA teachers across the distribution of math achievement. In reading, however, relative to veteran non-TFA teachers, students at the bottom of the reading distribution score worse in TFA classrooms, and students in the upper half of the distribution perform better. PMID:27668032

Two new sources of reactive gaseous mercury in the free troposphere

NASA Astrophysics Data System (ADS)

Timonen, H.; Ambrose, J. L.; Jaffe, D. A.

2012-11-01

Mercury (Hg) is a neurotoxin that bioaccumulates in the food chain. Mercury is emitted to the atmosphere primarily in its elemental form, which has a long lifetime allowing global transport. It is known that atmospheric oxidation of gaseous elemental mercury (GEM) generates reactive gaseous mercury (RGM) which plays an important role in the atmospheric mercury cycle by enhancing the rate of mercury deposition to ecosystems. However, the primary GEM oxidants, and the sources and chemical composition of RGM are poorly known. Using speciated mercury measurements conducted at the Mt. Bachelor Observatory since 2005 we present two previously unidentified sources of RGM to the free troposphere (FT). Firstly, we observed elevated RGM concentrations, large RGM/GEM-ratios, and anti-correlation between RGM and GEM during Asian long-rang transport events, demonstrating that RGM is formed from GEM by in-situ oxidation in some anthropogenic pollution plumes in the FT. During the Asian pollution events the measured RGM/GEM-ratios reached peak values, up to ~0.20, which are significantly larger than ratios typically measured (RGM/GEM < 0.05) in the Asian source region. Secondly, we observed very high RGM levels - the highest reported in the FT - in clean air masses that were processed upwind of Mt. Bachelor Observatory over the Pacific Ocean. The high RGM concentrations (up to 700 pg m-3), high RGM/GEM-ratios (up to 1), and very low ozone levels during these events provide the first observational evidence indicating significant GEM oxidation in the lower FT. The identification of these processes changes our conceptual understanding of the formation and distribution of oxidized Hg in the global atmosphere.

Assessment of the Extent of Land Deformation Associated with Salt Domes within the Jazan City and Surroundings, Saudi Arabia

NASA Astrophysics Data System (ADS)

Pankratz, H. G.; Sultan, M.; Fathy, K.; AlMogren, S. M.; Harbi, H.; Sefry, S.; Emil, M.; Elkadiri, R.; Ahmed, M.; Othman, A.; Chouinard, K.

2016-12-01

The Jazan city in the Jazan Province of the Kingdom of Saudi Arabia is a vibrant and rapidly growing economic center and port. The old city of Jazan is centered over a salt dome (diaper) that crops out over an area, 3-4 km wide and 20 to 40 m above surroundings. The intrusion of the diaper into the overlying cap rock causes uneven surfaces, compromises building foundations, and causes infrastructural problems. Our study is aimed at the assessment of the salt dome-related land deformation. Using observations acquired over known locations of salt domes in Jazan and neighboring Farsan Islands, we identified criteria by which previously unidentified, near-surface salt domes, could be mapped. The selected criteria and/or applied methodologies included: (1) deformation over potential salt dome locations detected from Envisat, ERS-2, and Sentinel-1 scenes using the Stanford Method for Persistent Scatterers [StaMPs] and SARscape software. Uplift rates of about 3 mm/yr were observed over the salt dome outcrop in Jazan with increasing rates towards the center, indicating continuous rise of the salt diaper. (2) Local elevation highs over potential, near surface, salt dome intrusions observed in high spatial resolution (12.5 m), PALSAR digital elevation model (DEM). The elevation the Jazan dome is 45m high, whereas its surroundings are 15-30m high. (3) Negative Bouguer gravity anomalies over potential salt dome locations (Bouguer maps generated from 714 m interval airborne gravity data). Negative Bouguer anomalies were observed over the salt domes in Jazan (-3 mGal) and in Farsan (-30 mGal). (4) Boundaries of the potential salt domes extracted from zero tilt contour values on tilt derivative maps. (5) Shallow (< 2km) modeled depth to identified potential salt dome locations (software: Grav2dc 2-D modeling software). Zero contour values and 2-D modeling was used to identify the location and depth of the source anomaly (depth: Jazan = 0 m). (6) Spatial correlation (in a GIS platform) of observations extracted from remote sensing, geophysical, GPS, and DEM datasets (items 1 through 5). Eight previously unidentified locations of potential near-surface salt domes were identified along the Red Sea coastline within the scene extent, five of which were north of the salt dome outcrop and three to the south.

Swift and GLAST Cooperative Efforts

NASA Technical Reports Server (NTRS)

Thompson, D. J.

2007-01-01

Because gamma-ray astrophysics depends in many ways on multiwavelength studies, the Gamma-ray Large Area Space Telescope (GLAST) instrument teams are eagerly anticipating coordinated observations with the Swift observatory. Swift and GLAST combined cover most of twelve orders of magnitude in the electromagnetic spectrum, offering numerous opportunities for cooperation. Three of the high-priority interests are: (1) gamma-ray burst studies; (2) broad-spectrum studies of blazars in both quiescent and flaring states; and (3) identification and detailed study of unidentified gamma-ray sources.

Sequence basis of Barnacle Cement Nanostructure is Defined by Proteins with Silk Homology

NASA Astrophysics Data System (ADS)

So, Christopher R.; Fears, Kenan P.; Leary, Dagmar H.; Scancella, Jenifer M.; Wang, Zheng; Liu, Jinny L.; Orihuela, Beatriz; Rittschof, Dan; Spillmann, Christopher M.; Wahl, Kathryn J.

2016-11-01

Barnacles adhere by producing a mixture of cement proteins (CPs) that organize into a permanently bonded layer displayed as nanoscale fibers. These cement proteins share no homology with any other marine adhesives, and a common sequence-basis that defines how nanostructures function as adhesives remains undiscovered. Here we demonstrate that a significant unidentified portion of acorn barnacle cement is comprised of low complexity proteins; they are organized into repetitive sequence blocks and found to maintain homology to silk motifs. Proteomic analysis of aggregate bands from PAGE gels reveal an abundance of Gly/Ala/Ser/Thr repeats exemplified by a prominent, previously unidentified, 43 kDa protein in the solubilized adhesive. Low complexity regions found throughout the cement proteome, as well as multiple lysyl oxidases and peroxidases, establish homology with silk-associated materials such as fibroin, silk gum sericin, and pyriform spidroins from spider silk. Distinct primary structures defined by homologous domains shed light on how barnacles use low complexity in nanofibers to enable adhesion, and serves as a starting point for unraveling the molecular architecture of a robust and unique class of adhesive nanostructures.

Inference of a 7.75 eV lower limit in the ultraviolet pumping of interstellar polycyclic aromatic hydrocarbon cations with resulting unidentified infrared emissions

NASA Technical Reports Server (NTRS)

Robinson, M. S.; Beegle, L. W.; Wdowiak, T. J.

1997-01-01

The discrete infrared features known as the unidentified infrared (UIR) bands originating in starburst regions of other galaxies, and in H II regions and planetary nebulae within the Milky Way, are widely thought to be the result of ultraviolet pumped infrared fluorescence of polycyclic aromatic hydrocarbon (PAH) molecules and ions. These UIR emissions are estimated to account for 10%-30% of the total energy emitted by galaxies. Laboratory absorption spectra including the vacuum ultraviolet region, as described in this paper, show a weakening of the intensity of absorption features as the population of cations increases, suggesting that strong pi* <-- pi transitions are absent in the spectra of PAH cations. This implies a lower energy bound for ultraviolet photons that pump infrared emissions from such ions at 7.75 eV, an amount greater than previously thought. The implications include size and structure limitations on the PAH molecules and ions which are apparent constituents of the interstellar medium. Also, this might affect estimations of the population of early-type stars in regions of rapid star formation.

Coesite in suevites from the Chesapeake Bay impact structure

USGS Publications Warehouse

Jackson, John C.; Horton, J. Wright; Chou, I-Ming; Belkin, Harvey E.

2016-01-01

The occurrence of coesite in suevites from the Chesapeake Bay impact structure is confirmed within a variety of textural domains in situ by Raman spectroscopy for the first time and in mechanically separated grains by X-ray diffraction. Microtextures of coesite identified in situ investigated under transmitted light and by scanning electron microscope reveal coesite as micrometer-sized grains (1–3 μm) within amorphous silica of impact-melt clasts and as submicrometer-sized grains and polycrystalline aggregates within shocked quartz grains. Coesite-bearing quartz grains are present both idiomorphically with original grain margins intact and as highly strained grains that underwent shock-produced plastic deformation. Coesite commonly occurs in plastically deformed quartz grains within domains that appear brown (toasted) in transmitted light and rarely within quartz of spheroidal texture. The coesite likely developed by a mechanism of solid-state transformation from precursor quartz. Raman spectroscopy also showed a series of unidentified peaks associated with shocked quartz grains that likely represent unidentified silica phases, possibly including a moganite-like phase that has not previously been associated with coesite.

A search for TeV gamma-ray emission from SNRs, pulsars and unidentified GeV sources in the Galactic plane in the longitude range between -2 deg and 85 deg.

NASA Astrophysics Data System (ADS)

Aharonian, F. A.; Akhperjanian, A. G.; Beilicke, M.; Bernloehr, K.; Bojahr, H.; Bolz, O.; Boerst, H.; Coarasa, T.; Contreras, J. L.; Cortina, J.; Denninghoff, S.; Fonseca, V.; Girma, M.; Goetting, N.; Heinzelmann, G.; Hermann, G.; Heusler, A.; Hofmann, W.; Horns, D.; Jung, I.; Kankanyan, R.; Kestel, M.; Kettler, J.; Kohnle, A.; Konopelko, A.; Kornmeyer, H.; Kranich, D.; Krawczynski, H.; Lampeitl, H.; Lopez, M.; Lorenz, E.; Lucarelli, F.; Mang, O.; Meyer, H.; Mirzoyan, R.; Moralejo, A.; Ona, E.; Panter, M.; Plyasheshnikov, A.; Puehlhofer, G.; Rauterberg, G.; Reyes, R.; Rhode, W.; Ripken, J.; Roehring, A.; Rowell, G. P.; Sahakian, V.; Samorski, M.; Schilling, M.; Siems, M.; Sobzynska, D.; Stamm, W.; Tluczykont, M.; Voelk, H. J.; Wiedner, C. A.; Wittek, W.

2002-12-01

Using the HEGRA system of imaging atmospheric Cherenkov telescopes, one quarter of the Galactic plane (-2o < l < 85o) was surveyed for TeV gamma-ray emission from point sources and moderately extended sources (φ <= 0.8o). The region covered includes 86 known pulsars (PSR), 63 known supernova remnants (SNR) and nine GeV sources, representing a significant fraction of the known populations. No evidence for emission of TeV gamma radiation was detected, and upper limits range from 0.15 Crab units up to several Crab units, depending on the observation time and zenith angles covered. The ensemble sums over selected SNR and pulsar subsamples and over the GeV-sources yield no indication of emission from these potential sources. The upper limit for the SNR population is 6.7% of the Crab flux and for the pulsar ensemble is 3.6% of the Crab flux.

Near Infrared Spectra of H2O/HCN Mixtures

NASA Technical Reports Server (NTRS)

Mastrapa, R. M.; Bernstein, M. P.; Sanford, S. A.

2006-01-01

Cassini's VIMS has already returned exciting results interpreting spectra of Saturn's icy satellites. The discovery of unidentified features possibly due to CN compounds inspired the work reported here. We wanted to test HCN as a possibility for explaining these features, and also explore how the features of HCN change when mixed with H2O. We have previously noted that mixing H20 and CO2 produces new spectral features and that those features change with temperature and mixing ratio.

Exploring the High Energy Universe: GLAST Mission and Science

NASA Technical Reports Server (NTRS)

McEnery, Julie

2007-01-01

GLAST, the Gamma-Ray Large Area Space Telescope, is NASA's next-generation high-energy gamma-ray satellite scheduled for launch in Autumn 2007. GLAST will allow measurements of cosmic gamma-ray sources in the 10 MeV to 100 GeV energy band to be made with unprecedented sensitivity. Amongst its key scientific objectives are to understand particle acceleration in Active Galactic Nuclei, Pulsars and Supernovae Remnants, to provide high resolution measurements of unidentified gamma-ray sources, to study transient high energy emission from objects such as gamma-ray bursts, and to probe Dark Matter and the early Universe. Dr. McEnery will present an overview of the GLAST mission and its scientific goals.

Optical Spectroscopic Survey of a Sample of Unidentified Fermi Objects

NASA Astrophysics Data System (ADS)

Paiano, Simona; Falomo, Renato; Franceschini, Alberto; Treves, Aldo; Scarpa, Riccardo

2017-12-01

We present optical spectroscopy secured at the 10 m Gran Telescopio Canarias of the counterparts of 20 extragalactic γ-ray sources detected by the Fermi satellite. The observations allow us to investigate the nature of these sources and to determine their redshift. We find that all optical counterparts have a spectrum that is consistent with a BL Lac object nature. We are able to determine the redshift for 11 objects and set spectroscopic redshift limits for five targets. The optical spectrum is found featureless for only four sources. In the latter cases, we can set lower limits on the redshift based on the assumption that they are hosted by a typical massive elliptical galaxy whose spectrum is diluted by the nonthermal continuum. The observations allow us to unveil the nature of these gamma-ray sources and provide a sanity check of a tool to discover the counterparts of γ-ray emitters/blazars based on their multiwavelength emission.

Blood meal analysis and virus detection in blood-fed mosquitoes collected during the 2006-2007 Rift Valley fever outbreak in Kenya.

PubMed

Lutomiah, Joel; Omondi, David; Masiga, Daniel; Mutai, Collins; Mireji, Paul O; Ongus, Juliette; Linthicum, Ken J; Sang, Rosemary

2014-09-01

Rift Valley fever (RVF) is a zoonosis of domestic ruminants in Africa. Blood-fed mosquitoes collected during the 2006-2007 RVF outbreak in Kenya were analyzed to determine the virus infection status and animal source of the blood meals. Blood meals from individual mosquito abdomens were screened for viruses using Vero cells and RT-PCR. DNA was also extracted and the cytochrome c oxidase 1 (CO1) and cytochrome b (cytb) genes amplified by PCR. Purified amplicons were sequenced and queried in GenBank and Barcode of Life Database (BOLD) to identify the putative blood meal sources. The predominant species in Garissa were Aedes ochraceus, (n=561, 76%) and Ae. mcintoshi, (n=176, 24%), and Mansonia uniformis, (n=24, 72.7%) in Baringo. Ae. ochraceus fed on goats (37.6%), cattle (16.4%), donkeys (10.7%), sheep (5.9%), and humans (5.3%). Ae. mcintoshi fed on the same animals in almost equal proportions. RVFV was isolated from Ae. ochraceus that had fed on sheep (4), goats (3), human (1), cattle (1), and unidentified host (1), with infection and dissemination rates of 1.8% (10/561) and 50% (5/10), respectively, and 0.56% (1/176) and 100% (1/1) in Ae. mcintoshi. In Baringo, Ma. uniformis fed on sheep (38%), frogs (13%), duikers (8%), cattle (4%), goats (4%), and unidentified hosts (29%), with infection and dissemination rates of 25% (6/24) and 83.3% (5/6), respectively. Ndumu virus (NDUV) was also isolated from Ae. ochraceus with infection and dissemination rates of 2.3% (13/561) and 76.9% (10/13), and Ae. mcintoshi, 2.8% (5/176) and 80% (4/5), respectively. Ten of the infected Ae. ochraceus had fed on goats, sheep (1), and unidentified hosts (2), and Ae. mcintoshi on goats (3), camel (1), and donkey (1). This study has demonstrated that RVFV and NDUV were concurrently circulating during the outbreak, and sheep and goats were the main amplifiers of these viruses respectively.

The effect of structure and a secondary carbon source on the microbial degradation of chlorophenoxy acids.

PubMed

Evangelista, S; Cooper, D G; Yargeau, V

2010-05-01

Pseudomonas putida, Aspergillus niger, Bacillus subtilis, Pseudomonas fluorescens, Sphingomonas herbicidovorans and Rhodococcus rhodochrous growing on glucose in a medium containing one of three chlorophenoxy acids at a concentration of 0.1 g L(-1) (clofibric acid, (R)-2-(4-chloro-2-methylphenoxy)propionic acid (mecoprop or MCPP) and 4-chloro-2-methylphenoxyacetic acid (MCPA)) degraded these compounds to varying degrees; from nonmeasurable to almost complete removal. These results with the addition of glucose (2.5 g L(-1)) as an easy to use carbon source indicated the formation of metabolites different from results reported in the literature for growth studies in which the chlorophenoxy acid was the sole carbon source. The metabolite, 4-chloro-2-methylphenol, which had been reported previously, was only observed in trace amounts for MCPP and MCPA in the presence of S. herbicidovorans and glucose. In addition, three other compounds (M1, M3 and M4) were observed. It is suggested that these unidentified metabolites resulted from ring opening of the metabolite 4-chloro-2-methylphenol (M2). The rate of biodegradation of the chlorophenoxy acids was influenced by the degree of steric hindrance adjacent to the internal oxygen bond common to all three compounds. The most hindered compound, clofibric acid, was converted to ethyl clofibrate by R. rhodochrous but was not degraded by any microorganisms studied. The more accessible internal oxygen bonds of the other two chlorophenoxy acids, MCPP and MCPA, were readily broken by S. herbicidovorans. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

Dissipative Intraplate Faulting During the 2016 Mw 6.2 Tottori, Japan Earthquake

NASA Astrophysics Data System (ADS)

Ross, Zachary E.; Kanamori, Hiroo; Hauksson, Egill; Aso, Naofumi

2018-02-01

The 2016 Mw 6.2 Tottori earthquake occurred on 21 October 2016 and produced thousands of aftershocks. Here we analyze high-resolution-relocated seismicity together with source properties of the mainshock to better understand the rupture process and energy budget. We use a matched-filter algorithm to detect and precisely locate >10,000 previously unidentified aftershocks, which delineate a network of sharp subparallel lineations exhibiting significant branching and segmentation. Seismicity below 8 km depth forms highly localized fault structures subparallel to the mainshock strike. Shallow seismicity near the main rupture plane forms more diffuse clusters and lineations that often are at a high angle (in map view) to the mainshock strike. An empirical Green's function technique is used to derive apparent source time functions for the mainshock, which show a large amplitude pulse 2-4 s long. We invert the apparent source time functions for a slip distribution and observe a 16 km2 patch with average slip 3.2 m. 93% of the seismic moment is below 8 km depth, which is approximately the depth below which the seismicity becomes very localized. These observations suggest that the mainshock rupture area was entirely within the lower half of the seismogenic zone. The radiated seismic energy is estimated to be 5.7 × 1013 J, while the static stress drop is estimated to be 18-27 MPa. These values yield a radiation efficiency of 5-7%, which indicates that the Tottori mainshock was extremely dissipative. We conclude that this inefficiency in energy radiation is likely a product of the immature intraplate environment and the underlying geometric complexity.

Hepatitis C virus antibody positivity and predictors among previously undiagnosed adult primary care outpatients: cross-sectional analysis of a multisite retrospective cohort study.

PubMed

Smith, Bryce D; Yartel, Anthony K; Krauskopf, Katherine; Massoud, Omar I; Brown, Kimberly A; Fallon, Michael B; Rein, David B

2015-04-15

Hepatitis C virus (HCV) testing guidance issued by the Centers for Disease Control and Prevention in 1998 recommends HCV antibody (anti-HCV) testing for persons with specified risk factors. The purpose of this study was to determine the prevalence and predictors of anti-HCV positivity among primary care outpatients and estimate the proportion of unidentified anti-HCV-positive (anti-HCV+) persons using risk-based testing. We analyzed electronic medical record data from a 4-site retrospective study. Patients were aged ≥18 years, utilized ≥1 outpatient primary care service(s) between 2005 and 2010, and had no documented evidence of prior HCV diagnosis. Among persons tested for anti-HCV, we fit a multilevel logistic regression model to identify patient-level independent predictors of anti-HCV positivity. We estimated the proportion of unidentified anti-HCV+ persons by using multiple imputation to assign anti-HCV results to untested patients. We observed 209 076 patients for a median of 5 months (interquartile range, 1-23 months). Among 17 464 (8.4%) patients who were tested for anti-HCV, 6.4% (n=1115) were positive. We identified history of injection drug use (adjusted odds ratio [95% confidence interval], 6.3 [5.2-7.6]), 1945-1965 birth cohort (4.4 [3.8-5.1]), and elevated alanine aminotransferase levels (4.8 [4.2-5.6]) as independently associated with anti-HCV positivity. We estimated that 81.5% (n=4890/6005) of anti-HCV+ patients were unidentified using risk-based testing. In these outpatient primary care settings, risk-based testing may have missed 4 of 5 newly enrolled patients who are anti-HCV+. Without knowing their status, unidentified anti-HCV+ persons cannot receive further clinical evaluation or antiviral treatment, and are unlikely to benefit from secondary prevention recommendations to limit disease progression and mortality. Published by Oxford University Press on behalf of the Infectious Diseases Society of America 2015. This work is written by (a) US Government employee(s) and is in the public domain in the US.

77 FR 49793 - Ortho-Phthalaldehyde; Receipt of Application for Emergency Exemption, Solicitation of Public Comment

Federal Register 2010, 2011, 2012, 2013, 2014

2012-08-17

... parapaucimobilis, Stenotrophomonas maltophilia, Methylobacterium extorquens, and unidentified gram negative rods..., Stenotrophomonas maltophilia, Methylobacterium extorquens, and unidentified gram negative rods. Information in...

VLA observations of unidentified Leiden-Berkeley Deep-Survey sources - Luminosity and redshift dependence of spectral properties

NASA Technical Reports Server (NTRS)

Kapahi, Vijay K.; Kulkarni, Vasant K.

1990-01-01

VLA observations of a complete subset of the Leiden-Berkeley Deep Survey sources that have S(1.4 GHz) greater than 10 mJy and are not optically identified down to F=22 mag are reported. By comparing the spectral and structural properties of the sources with samples from the literature, an attempt was made to disentangle the luminosity and redshift dependence of the spectral indices of extended emission in radio galaxies and of the incidence of compact steep-spectrum sources. It is found that the fraction of compact sources among those with a steep spectrum is related primarily to redshift, being much larger at high redshifts for sources of similar radio luminosity. Only a weak and marginally significant dependence of spectral indices of the extended sources on luminosity and redshift is found in samples selected at 1.4 and 2.7 GHz. It is pointed out that the much stronger correlation of spectral indices with luminosity may be arising partly from spectral curvature, and partly due to the preferential inclusion of very steep-spectrum sources from high redshift in low-frequency surveys.

MULE SPINNING, LOCATION UNIDENTIFIED. PHOTOCOPY OF c. 1900 VIEW. From ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

MULE SPINNING, LOCATION UNIDENTIFIED. PHOTOCOPY OF c. 1900 VIEW. From the collection of Mr. George Durette, Photographer, Manchester, N. H. - Amoskeag Millyard, Canal Street, Manchester, Hillsborough County, NH

The Arizona Radio Observatory 1 mm Spectral Survey of IRC +10216 and VY Canis Majoris (215-285 GHz)

NASA Astrophysics Data System (ADS)

Tenenbaum, E. D.; Dodd, J. L.; Milam, S. N.; Woolf, N. J.; Ziurys, L. M.

2010-10-01

A low noise (1σ rms ~ 3 mK) 1 mm spectral survey (214.5-285.5 GHz) of the oxygen-rich supergiant VY Canis Majoris and the carbon-rich asymptotic giant branch star IRC +10216 has been conducted using the Arizona Radio Observatory's 10 m Submillimeter Telescope. Here the complete data set is presented. This study, carried out with a new ALMA-type receiver, marks the first continuous band scan of an O-rich circumstellar envelope, and the most sensitive survey to date of IRC +10216. In VY CMa, 130 distinct molecular lines were detected, 14 of which cannot be identified; in IRC +10216, 717 lines were observed, with 126 features remaining unidentified. In the 1 mm bands of VY CMa and IRC +10216, emission is present from 18 and 32 different chemical compounds, respectively, with 10 species common to both sources. Many narrow emission lines were observed in both circumstellar shells, arising from vibrationally excited molecules and from refractory-containing species. Line profiles in VY CMa also exhibit a variety of different shapes, caused by the complex, asymmetric outflow of this object. The survey highlights the fact that C-rich and O-rich circumstellar envelopes are chemically interesting, and both are sources of new interstellar molecules. The high number of unidentified lines and the unreliable rest frequencies for known species such as NaCN indicate the need for additional laboratory spectroscopy studies.

The Arizona Radio Observatory 1 mm Spectral Survey of IRC (plus)10216 and VY Canis Majoris (215-285 GHz)

NASA Technical Reports Server (NTRS)

Tenenbaum, E. D.; Dodd, J. L.; Milam, S. N.; Woolf, N. J.; Ziurys, L. M.

2010-01-01

A low noise (1(sigma) rms approx. 3 mK) 1. nun spectral survey (214.5-285.5 GHz) of the oxygen-rich supergiant VY Canis Majoris and the carbon-rich asymptotic giant branch star IRC +10216 has been conducted using the Arizona Radio Observatory's 10 m Submillimeter Telescope. Here the complete data set is presented. This study, carried out with a new ALMA-type receiver, marks the first continuous band scan of an O-rich circumstellar envelope, and the most sensitive survey to date of IRC +10216. In VY CMa, 130 distinct molecular lines were detected, 14 of which cannot be identified; in IRC +10216, 717 lines were observed, with 126 features remaining unidentified. In the 1 mm bands of VY CMa and IRC +10216, emission is present from 18 and 32 different chemical compounds, respectively, with 10 species common to both sources. Many narrow emission lines were observed in both circumstellar shells, arising from vibrationally excited molecules and from refractory-containing species. Line profiles in VY CMa also exhibit a variety of different shapes, caused by the complex, asymmetric outflow of this object. The survey highlights the fact that C-rich and O-rich circumstellar envelopes are chemically interesting, and both are sources of new interstellar molecules. The high number of unidentified lines and the unreliable, rest frequencies for known species such as NaCN indicate the need for additional laboratory spectroscopy studies.

An unidentified filarial species and its impact on fitness in wild populations of the black-footed ferret (Mustela nigripes).

PubMed

Wisely, Samantha M; Howard, JoGayle; Williams, Steven A; Bain, Odile; Santymire, Rachel M; Bardsley, Katherine D; Williams, Elizabeth S

2008-01-01

Disease can threaten the restoration of endangered species directly by substantially decreasing host survival or indirectly via incremental decreases in survival and reproduction. During a biomedical survey of reintroduced populations of the highly endangered black-footed ferret from 2002 to 2005, microfilariae discovered in the blood were putatively identified as Dirofilaria immitis, and widespread screening was initiated using a commercially available antigen-based ELISA test. A subset of animals (n = 16) was screened for D. immitis using a highly sensitive PCR-based assay. Microfilariae were also molecularly and morphologically characterized. Of 198 animals at six reintroduction sites, 12% had positive results using the ELISA test. No antigen-positive animals which were screened via PCR (n = 11) had positive PCR results, and all antigen-positive animals (n = 24) were asymptomatic. No significant differences were found in body mass of antigen-positive (male: 1223 +/- 82 g [mean +/- SD], female: 726 +/- 75 g) vs. antigen-negative (male: 1,198 +/- 119 g, female: 710 +/- 53 g) individuals (P = 0.4). Antigen prevalence was lower in juveniles (3%) than adults (12%; P = 0.03), and higher in in situ, captive-reared individuals (33%) than wild-born individuals (10%; P = 0.005). Morphologic analysis of microfilariae revealed they were neither D. immitis nor any other previously characterized North American species. PCR amplification of the 5S spacer region of rDNA revealed that the filarial sequence shared only 76% identity with D. immitis. This previously unidentified filarial sequence was present in all antigen positive animals (11 of 11 tested). It appears that black-footed ferrets were infected with a previously undescribed species of filaria whose antigen cross-reacted with the ELISA assay, although further analysis is needed to make a conclusive statement. Nonetheless, this previously undescribed filaria does not appear to threaten recovery for this highly endangered mammal.

VizieR Online Data Catalog: Blazars with γ-ray counterparts. II. (Massaro+, 2013)

NASA Astrophysics Data System (ADS)

Massaro, F.; D'Abrusco, R.; Paggi, A.; Masetti, N.; Giroletti, M.; Tosti, G.; Smith, H. A.; Funk, S.

2013-06-01

Our primary sample of unidentified γ-ray sources (UGSs) consists of all the sources for which no counterpart was assigned at low energies in the 2FGL or in the 2LAC (Nolan et al. 2012, Cat. J/ApJS/199/31; Ackermann et al. 2011, Cat. J/ApJ/743/171, respectively), for a total of 590 γ-ray objects. We considered and analyzed independently two subsamples of UGSs, distinguishing the 299 Fermi sources without any γ-ray analysis flags from the other 291 objects that have a warning in their γ-ray detection. The complete description of our association procedure together with the estimates of its efficiency and its completeness can be found in D'Abrusco et al. (Paper I, 2013, Cat. J/ApJS/206,12). (9 data files).

Probing the X-ray Emission from the Massive Star Cluster Westerlund 2

NASA Astrophysics Data System (ADS)

Lopez, Laura

2017-09-01

We propose a 300 ks Chandra ACIS-I observation of the massive star cluster Westerlund 2 (Wd2). This region is teeming with high-energy emission from a variety of sources: colliding wind binaries, OB and Wolf-Rayet stars, two young pulsars, and an unidentified source of very high-energy (VHE) gamma-rays. Our Chandra program is designed to achieve several goals: 1) to take a complete census of Wd2 X-ray point sources and monitor variability; 2) to probe the conditions of the colliding winds in the binary WR 20a; 3) to search for an X-ray counterpart of the VHE gamma-rays; 4) to identify diffuse X-ray emission; 5) to compare results to other massive star clusters observed by Chandra. Only Chandra has the spatial resolution and sensitivity necessary for our proposed analyses.

18. Photocopy of undated illustration in unidentified publication. CEILING AND ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

18. Photocopy of undated illustration in unidentified publication. CEILING AND REREDOS PRESERVED IN 1884 RESTORATION - Mission Santa Clara de Asis, Franklin & Grant Streets, Santa Clara, Santa Clara County, CA

Cooked carrot volatiles. AEDA and odor activity comparisons. Identification of linden ether as an important aroma component.

PubMed

Buttery, Ron G; Takeoka, Gary R

2013-09-25

MS with GC-RI evidence was found for the presence of linden ether in cooked carrot (Daucus carota). Evaluation of the GC effluent from cooked carrot volatiles using aroma extract dilution analysis (AEDA) found linden ether with the highest flavor dilution (FD) factor. Others with 10-fold lower FD factors were β-ionone, eugenol, the previously unidentified β-damascenone, (E)-2-nonenal, octanal (+ myrcene), and heptanal. All other previously identified volatiles showed lower FD factors. Odor thresholds, concentrations, and odor activity values of previously identified compounds are reviewed. This indicated that at least 20 compounds occur in cooked carrots above their odor thresholds (in water). Compounds showing the highest odor activity values included β-damascenone, (E)-2-nonenal, (E,E)-2,4-decadienal, β-ionone, octanal, (E)-2-decenal, eugenol, and p-vinylguaiacol.

Simulating deep surveys of the Galactic Plane with the Advanced Gamma-ray Imaging System (AGIS)

NASA Astrophysics Data System (ADS)

Funk, Stefan; Digel, Seth

2009-05-01

The pioneering survey of the Galactic plane by H.E.S.S., together with the northern complement now underway with VERITAS, has shown the inner Milky Way to be rich in TeV-emitting sources; new source classes have been found among the H.E.S.S. detections and unidentified sources remain. In order to explore optimizations of the design of an Advanced Gamma-ray Imaging System (AGIS)-like instrument for survey science, we constructed a model of the flux and size distributions of Galactic TeV sources, normalized to the H.E.S.S. sources but extrapolated to lower flux levels. We investigated potential outcomes from a survey with the order of magnitude improvement in sensitivity and attendant improvement in angular resolution planned for AGIS. Studies of individual sources and populations found with such a sensitivity survey will advance understanding of astrophysical particle acceleration, source populations, and even high-energy cosmic rays via detection of the low-level TeV diffuse emission in regions of high cosmic-ray densitiy.

Seven-year Wilkinson Microwave Anisotropy Probe (WMAP) Observations: Planets and Celestial Calibration Sources

NASA Astrophysics Data System (ADS)

Weiland, J. L.; Odegard, N.; Hill, R. S.; Wollack, E.; Hinshaw, G.; Greason, M. R.; Jarosik, N.; Page, L.; Bennett, C. L.; Dunkley, J.; Gold, B.; Halpern, M.; Kogut, A.; Komatsu, E.; Larson, D.; Limon, M.; Meyer, S. S.; Nolta, M. R.; Smith, K. M.; Spergel, D. N.; Tucker, G. S.; Wright, E. L.

2011-02-01

We present WMAP seven-year observations of bright sources which are often used as calibrators at microwave frequencies. Ten objects are studied in five frequency bands (23-94 GHz): the outer planets (Mars, Jupiter, Saturn, Uranus, and Neptune) and five fixed celestial sources (Cas A, Tau A, Cyg A, 3C274, and 3C58). The seven-year analysis of Jupiter provides temperatures which are within 1σ of the previously published WMAP five-year values, with slightly tighter constraints on variability with orbital phase (0.2% ± 0.4%), and limits (but no detections) on linear polarization. Observed temperatures for both Mars and Saturn vary significantly with viewing geometry. Scaling factors are provided which, when multiplied by the Wright Mars thermal model predictions at 350 μm, reproduce WMAP seasonally averaged observations of Mars within ~2%. An empirical model is described which fits brightness variations of Saturn due to geometrical effects and can be used to predict the WMAP observations to within 3%. Seven-year mean temperatures for Uranus and Neptune are also tabulated. Uncertainties in Uranus temperatures are 3%-4% in the 41, 61, and 94 GHz bands; the smallest uncertainty for Neptune is 8% for the 94 GHz band. Intriguingly, the spectrum of Uranus appears to show a dip at ~30 GHz of unidentified origin, although the feature is not of high statistical significance. Flux densities for the five selected fixed celestial sources are derived from the seven-year WMAP sky maps and are tabulated for Stokes I, Q, and U, along with polarization fraction and position angle. Fractional uncertainties for the Stokes I fluxes are typically 1% to 3%. Source variability over the seven-year baseline is also estimated. Significant secular decrease is seen for Cas A and Tau A: our results are consistent with a frequency-independent decrease of about 0.53% per year for Cas A and 0.22% per year for Tau A. We present WMAP polarization data with uncertainties of a few percent for Tau A. Where appropriate, WMAP results are compared against previous findings in the literature. With an absolute calibration uncertainty of 0.2%, WMAP data are a valuable asset for calibration work. WMAP is the result of a partnership between Princeton University and NASA's Goddard Space Flight Center. Scientific guidance is provided by the WMAP Science Team.

SEVEN-YEAR WILKINSON MICROWAVE ANISOTROPY PROBE (WMAP ) OBSERVATIONS: PLANETS AND CELESTIAL CALIBRATION SOURCES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Weiland, J. L.; Odegard, N.; Hill, R. S.

2011-02-01

We present WMAP seven-year observations of bright sources which are often used as calibrators at microwave frequencies. Ten objects are studied in five frequency bands (23-94 GHz): the outer planets (Mars, Jupiter, Saturn, Uranus, and Neptune) and five fixed celestial sources (Cas A, Tau A, Cyg A, 3C274, and 3C58). The seven-year analysis of Jupiter provides temperatures which are within 1{sigma} of the previously published WMAP five-year values, with slightly tighter constraints on variability with orbital phase (0.2% {+-} 0.4%), and limits (but no detections) on linear polarization. Observed temperatures for both Mars and Saturn vary significantly with viewing geometry.more » Scaling factors are provided which, when multiplied by the Wright Mars thermal model predictions at 350 {mu}m, reproduce WMAP seasonally averaged observations of Mars within {approx}2%. An empirical model is described which fits brightness variations of Saturn due to geometrical effects and can be used to predict the WMAP observations to within 3%. Seven-year mean temperatures for Uranus and Neptune are also tabulated. Uncertainties in Uranus temperatures are 3%-4% in the 41, 61, and 94 GHz bands; the smallest uncertainty for Neptune is 8% for the 94 GHz band. Intriguingly, the spectrum of Uranus appears to show a dip at {approx}30 GHz of unidentified origin, although the feature is not of high statistical significance. Flux densities for the five selected fixed celestial sources are derived from the seven-year WMAP sky maps and are tabulated for Stokes I, Q, and U, along with polarization fraction and position angle. Fractional uncertainties for the Stokes I fluxes are typically 1% to 3%. Source variability over the seven-year baseline is also estimated. Significant secular decrease is seen for Cas A and Tau A: our results are consistent with a frequency-independent decrease of about 0.53% per year for Cas A and 0.22% per year for Tau A. We present WMAP polarization data with uncertainties of a few percent for Tau A. Where appropriate, WMAP results are compared against previous findings in the literature. With an absolute calibration uncertainty of 0.2%, WMAP data are a valuable asset for calibration work.« less

Roseomonas oryzae sp. nov., isolated from paddy rhizosphere soil.

PubMed

Ramaprasad, E V V; Sasikala, Ch; Ramana, Ch V

2015-10-01

A non-motile, coccus-shaped, pale-pink-pigmented bacterium, designated strain JC288T, was isolated from a paddy rhizosphere soil collected from Western Ghats, Kankumbi, Karnataka, India. Cells were found to be Gram-stain-negative, and catalase- and oxidase-positive; the major fatty acids were C16 : 0, C16 : 1ω7c/C16 : 1ω6c, C18 : 1ω7c/C18 : 1ω6c and C18 : 1 2-OH. The predominant respiratory quinone was Q-10 and the genomic DNA G+C content was 67.5 mol%. Strain JC288T contained diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, four unidentified aminolipids, three unidentified phospholipids, two unidentified lipids, an aminophospholipid and a glycolipid. Hydroxyspirilloxanthin was the major carotenoid of strain JC288T. 16S rRNA gene sequence comparisons indicated that strain JC288T represents a member of the genus Roseomonas within the family Acetobacteraceae of the phylum Proteobacteria. Strain JC288T shared the highest 16S rRNA gene sequence similarity with Roseomonas rhizosphaerae YW11T (97.3 %), Roseomonas aestuarii JC17T (97.1 %), Roseomonas cervicalis CIP 104027T (95.9 %) and other members of the genus Roseomonas ( < 95.5 %). The distinct genomic difference and morphological, physiological and chemotaxonomic differences from the previously described taxa support the classification of strain JC288T as a representative of a novel species of the genus Roseomonas, for which the name Roseomonas oryzae sp. nov. is proposed. The type strain is JC288T ( = KCTC 42542T = LMG 28711T).

On the carriers of the 21μm emission feature in post-asymptotic giant branch stars

NASA Astrophysics Data System (ADS)

Zhang, Ke; Jiang, B. W.; Li, Aigen

2009-07-01

The mysterious 21μm emission feature seen in sixteen C-rich proto-planetary nebulae (PPNe) remains unidentified since its discovery in 1989. Over a dozen of materials are suggested as the carrier candidates. In this work, we quantitatively investigate eight inorganic and one organic carrier candidates in terms of elemental abundance constraints, while previous studies mostly focus on their spectral profiles (which could be largely affected by grain size, shape and clustering effects). It is found that: (1) five candidates (TiC nanoclusters, fullerenes coordinated with Ti atoms, SiS2, doped-SiC and SiO2-coated SiC dust) violate the abundance constraints (i.e. they require too much Ti, S or Si to account for the emission power of the 21μm band, (2) three candidates (carbon and silicon mixtures, Fe2O3 and Fe3O4), while satisfying the abundance constraints, exhibit secondary features which are not detected in the 21μm sources and (3) nano FeO, neither exceeding the abundance budget nor producing undetected secondary features, seems to be a viable candidate, supporting the suggestions of Posch, Mutschke & Andersen.

Phospholipids of New Zealand Edible Brown Algae.

PubMed

Vyssotski, Mikhail; Lagutin, Kirill; MacKenzie, Andrew; Mitchell, Kevin; Scott, Dawn

2017-07-01

Edible brown algae have attracted interest as a source of beneficial allenic carotenoid fucoxanthin, and glyco- and phospholipids enriched in polyunsaturated fatty acids. Unlike green algae, brown algae contain no or little phosphatidylserine, possessing an unusual aminophospholipid, phosphatidyl-O-[N-(2-hydroxyethyl) glycine], PHEG, instead. When our routinely used technique of 31 P-NMR analysis of phospholipids was applied to the samples of edible New Zealand brown algae, a number of signals corresponding to unidentified phosphorus-containing compounds were observed in total lipids. NI (negative ion) ESI QToF MS spectra confirmed the presence of more familiar phospholipids, and also suggested the presence of PHEG or its isomers. The structure of PHEG was confirmed by comparison with a synthetic standard. An unusual MS fragmentation pattern that was also observed prompted us to synthesise a number of possible candidates, and was found to follow that of phosphatidylhydroxyethyl methylcarbamate, likely an extraction artefact. An unexpected outcome was the finding of ceramidephosphoinositol that has not been reported previously as occurring in brown algae. An uncommon arsenic-containing phospholipid has also been observed and quantified, and its TLC behaviour studied, along with that of the newly synthesised lipids.

Birth of a new gene on the Y chromosome of Drosophila melanogaster

PubMed Central

Carvalho, Antonio Bernardo; Vicoso, Beatriz; Russo, Claudia A. M.; Swenor, Bonnielin; Clark, Andrew G.

2015-01-01

Contrary to the pattern seen in mammalian sex chromosomes, where most Y-linked genes have X-linked homologs, the Drosophila X and Y chromosomes appear to be unrelated. Most of the Y-linked genes have autosomal paralogs, so autosome-to-Y transposition must be the main source of Drosophila Y-linked genes. Here we show how these genes were acquired. We found a previously unidentified gene (flagrante delicto Y, FDY) that originated from a recent duplication of the autosomal gene vig2 to the Y chromosome of Drosophila melanogaster. Four contiguous genes were duplicated along with vig2, but they became pseudogenes through the accumulation of deletions and transposable element insertions, whereas FDY remained functional, acquired testis-specific expression, and now accounts for ∼20% of the vig2-like mRNA in testis. FDY is absent in the closest relatives of D. melanogaster, and DNA sequence divergence indicates that the duplication to the Y chromosome occurred ∼2 million years ago. Thus, FDY provides a snapshot of the early stages of the establishment of a Y-linked gene and demonstrates how the Drosophila Y has been accumulating autosomal genes. PMID:26385968

CORLISS ENGINE WITH DYNAMO AND ROPE DRIVE. LOCATION UNIDENTIFIED. PHOTOCOPY ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

CORLISS ENGINE WITH DYNAMO AND ROPE DRIVE. LOCATION UNIDENTIFIED. PHOTOCOPY OF c. 1900 VIEW. From the collection of the Manchester Historic Association, Manchester, N. H. - Amoskeag Millyard, Canal Street, Manchester, Hillsborough County, NH

Exploring the High Energy Universe: GLAST Mission and Science

NASA Technical Reports Server (NTRS)

McEnery, Julie

2007-01-01

GLAST, the Gamma-Ray Large Area Space Telescope, is NASA's next-generation high-energy gamma-ray satellite scheduled for launch in Autumn 2007. GLAST will allow measurements of cosmic gamma-ray sources in t he 10 MeV to 100 GeV energy band to be made with unprecedented sensi tivity. Amongst its key scientific objectives are to understand part icle acceleration in Active Galactic Nuclei, Pulsars and Supernovae Remnants, to provide high resolution measurements of unidentified ga mma-ray sources, to study transient high energy emission from objects such as gamma-ray bursts, and to probe Dark Matter and the early Uni verse. Dr. McEnery will present an overview of the GLAST mission and its scientific goals.

A calcium-permeable cGMP-activated cation conductance in hippocampal neurons

NASA Technical Reports Server (NTRS)

Leinders-Zufall, T.; Rosenboom, H.; Barnstable, C. J.; Shepherd, G. M.; Zufall, F.

1995-01-01

Whole-cell patch clamp recordings detected a previously unidentified cGMP-activated membrane conductance in cultured rat hippocampal neurons. This conductance is nonselectively permeable for cations and is completely but reversibly blocked by external Cd2+. The Ca2+ permeability of the hippocampal cGMP-activated conductance was examined in detail, indicating that the underlying ion channels display a high relative permeability for Ca2+. The results indicate that hippocampal neurons contain a cGMP-activated membrane conductance that has some properties similar to the cyclic nucleotide-gated channels previously shown in sensory receptor cells and retinal neurons. In hippocampal neurons this conductance similarly could mediate membrane depolarization and Ca2+ fluxes in response to intracellular cGMP elevation.

High manganese concentrations in rocks at Gale crater, Mars

USGS Publications Warehouse

Lanza, Nina L.; Fischer, Woodward W.; Wiens, Roger C.; Grotzinger, John P.; Ollila, Ann M.; Anderson, Ryan B.; Clark, Benton C.; Gellert, Ralf; Mangold, Nicolas; Maurice, Sylvestre; Le Mouélic, Stéphane; Nachon, Marion; Schmidt, Mariek E.; Berger, Jeffrey; Clegg, Samuel M.; Forni, Olivier; Hardgrove, Craig; Melikechi, Noureddine; Newsom, Horton E.; Sautter, Violaine

2014-01-01

The surface of Mars has long been considered a relatively oxidizing environment, an idea supported by the abundance of ferric iron phases observed there. However, compared to iron, manganese is sensitive only to high redox potential oxidants, and when concentrated in rocks, it provides a more specific redox indicator of aqueous environments. Observations from the ChemCam instrument on the Curiosity rover indicate abundances of manganese in and on some rock targets that are 1–2 orders of magnitude higher than previously observed on Mars, suggesting the presence of an as-yet unidentified manganese-rich phase. These results show that the Martian surface has at some point in time hosted much more highly oxidizing conditions than has previously been recognized.

The far-ultraviolet /1180-1950 A/ emission spectrum of Arcturus

NASA Technical Reports Server (NTRS)

Mckinney, W. R.; Giles, J. W.; Moos, H. W.

1976-01-01

The far-ultraviolet (1180-1950 A) emission spectrum of the K2 IIIp star, Arcturus, has been obtained with a rocket-borne multichannel spectrometer. The use of multiple detectors gave an increase in effective observing time and permitted an improvement in spectral resolution over two previous rocket measurements. H I at 1216-A and O I at 1304 A are the only identified emissions, and the observed H I 1216-A flux is low compared with previous observations. A third unidentified feature was observed at 1511 A. The absence of many lines found in emission from the sun is striking. The absence of certain features implies that the coronal temperature must be either below 50,000 K or above 350,000 K.

LS 5039 - the counterpart of the unidentified MeV source GRO J1823-12

NASA Astrophysics Data System (ADS)

Collmar, W.; Zhang, S.

2014-05-01

Context. The COMPTEL experiment on CGRO observed the γ-ray sky at energies from 0.75 MeV to 30 MeV between April 1991 and June 2000. COMPTEL detected many γ-ray sources, among them an unidentified one labeled GRO J1823-12. It is located near l/b = 17.5°/-0.5° and positionally consistent with the prominent γ-ray binary LS 5039. Aims: LS 5039 was established as a γ-ray source at TeV energies by HESS and at GeV energies by Fermi/LAT during recent years, whose γ-ray radiation is modulated along its binary orbit. Given this new information we reanalyzed the COMPTEL data of GRO J1823-12 including an orbital-resolved analysis. Methods: We applied the standard methods, proper event selections and data binning with subsequent maximum-likelihood deconvolution, to analyze the COMPTEL data. In addition we developed a tool for selecting and binning the COMPTEL data in a phase-resolved manner. We present the orbit-averaged, as well as orbit-resolved MeV analyses, light curves, and spectra, and put them into a multifrequency context. Results: The COMPTEL data show a significant MeV source, which is positionally consistent with LS 5039, but also with other closeby Fermi/LAT sources. The orbit-resolved analysis provides strong evidence, at about the 3σ level, that the MeV flux of GRO J1823-12 is modulated along the binary orbit of about 3.9 days of LS 5039. We show that at MeV energies, the source is brighter at the orbital part around the inferior conjunction than at the part of the superior conjunction, so it is in phase with X-rays and TeV γ-rays, but in anti-phase with GeV γ-rays. The high-energy spectral energy distribution (X-rays to TeV γ-rays) shows the high-energy emission maximum of LS 5039 at MeV energies. Conclusions: We conclude that the COMPTEL source GRO J1823-12 is the counterpart of the microquasar LS 5039, at least for the majority of its MeV emission. The COMPTEL fluxes, put into multifrequency perspective, provide new constraints on the modeling of the high-energy emission pattern of the γ-ray binary LS 5039. Table 1 is available in electronic form at http://www.aanda.org

Mapping, Monitoring, and Modeling Geomorphic Processes to Identify Sources of Anthropogenic Sediment Pollution in West Maui, Hawai'i

NASA Astrophysics Data System (ADS)

Cerovski-Darriau, C.; Stock, J. D.; Winans, W. R.

2016-12-01

Episodic storm runoff in West Maui (Hawai'i) brings plumes of terrestrially-sourced fine sediment to the nearshore ocean environment, degrading coral reef ecosystems. The sediment pollution sources were largely unknown, though suspected to be due to modern human disturbance of the landscape, and initially assumed to be from visibly obvious exposed soil on agricultural fields and unimproved roads. To determine the sediment sources and estimate a sediment budget for the West Maui watersheds, we mapped the geomorphic processes in the field and from DEMs and orthoimagery, monitored erosion rates in the field, and modeled the sediment flux using the mapped processes and corresponding rates. We found the primary source of fine sands, silts and clays to be previously unidentified fill terraces along the stream bed. These terraces, formed during legacy agricultural activity, are the banks along 40-70% of the streams where the channels intersect human-modified landscapes. Monitoring over the last year shows that a few storms erode the fill terraces 10-20 mm annually, contributing up to 100s of tonnes of sediment per catchment. Compared to the average long-term, geologic erosion rate of 0.03 mm/yr, these fill terraces alone increase the suspended sediment flux to the coral reefs by 50-90%. Stakeholders can use our resulting geomorphic process map and sediment budget to inform the location and type of mitigation effort needed to limit terrestrial sediment pollution. We compare our mapping, monitoring, and modeling (M3) approach to NOAA's OpenNSPECT model. OpenNSPECT uses empirical hydrologic and soil erosion models paired with land cover data to compare the spatially distributed sediment yield from different land-use scenarios. We determine the relative effectiveness of calculating a baseline watershed sediment yield from each approach, and the utility of calibrating OpenNSEPCT with M3 results to better forecast future sediment yields from land-use or climate change scenarios.

Complete identification of the Parkes half-Jansky sample of GHz peaked spectrum radio galaxies

NASA Astrophysics Data System (ADS)

de Vries, N.; Snellen, I. A. G.; Schilizzi, R. T.; Lehnert, M. D.; Bremer, M. N.

2007-03-01

Context: Gigahertz Peaked Spectrum (GPS) radio galaxies are generally thought to be the young counterparts of classical extended radio sources. Statistically complete samples of GPS sources are vital for studying the early evolution of radio-loud AGN and the trigger of their nuclear activity. The "Parkes half-Jansky" sample of GPS radio galaxies is such a sample, representing the southern counterpart of the 1998 Stanghellini sample of bright GPS sources. Aims: As a first step of the investigation of the sample, the host galaxies need to be identified and their redshifts determined. Methods: Deep R-band VLT-FORS1 and ESO 3.6 m EFOSC II images and long slit spectra have been taken for the unidentified sources in the sample. Results: We have identified all twelve previously unknown host galaxies of the radio sources in the sample. Eleven have host galaxies in the range 21.0 < RC < 23.0, while one object, PKS J0210+0419, is identified in the near infrared with a galaxy with Ks = 18.3. The redshifts of 21 host galaxies have been determined in the range 0.474 < z < 1.539, bringing the total number of redshifts to 39 (80%). Analysis of the absolute magnitudes of the GPS host galaxies show that at z>1 they are on average a magnitude fainter than classical 3C radio galaxies, as found in earlier studies. However their restframe UV luminosities indicate that there is an extra light contribution from the AGN, or from a population of young stars. Based on observations collected at the European Southern Observatory Very Large Telescope, Paranal, Chile (ESO prog. ID No. 073.B-0289(B)) and the European Southern Observatory 3.6 m Telescope, La Silla, Chile (prog. ID No. 073.B-0289(A)). Appendices are only available in electronic form at http://www.aanda.org

Discovery of a Transient Magnetar: XTE J1810-197

NASA Technical Reports Server (NTRS)

Ibrahim, Alaa I.; Markwardt, Craig B.; Swank, Jean H.; Ransom, Scott; Roberts, Mallory; Kaspi, Victoria; Woods, Peter M.; Safi-Harb, Samar; Balman, Solen; Parke, William C.

2004-01-01

We report the discovery of a new X-ray pulsar, XTE J1810-197, that was serendipitously discovered on 2003 July 15 by the Rossi X-Ray Timing Explorer (RXTE) while observing the soft gamma repeater SGR 1806-20. The pulsar has a 5.54 s spin period, a soft X-ray spectrum (with a photon index of approx. = 4). and is detectable in earlier RXTE observations back to 2003 January but not before. These show that a transient outburst began between 2002 November 17 and 2003 January 23 and that the source's persistent X-ray flux has been declining since then. The pulsar exhibits a high spin-down rate P approx.= l0(exp -11) s/s with no evidence of Doppler shifts due to a binary companion. The rapid spin-down rate and slow spin period imply a supercritical characteristic magnetic field B approx. = 3 x l0(exp 14) G and a young age tau less than or = 7600 yr. Follow-up Chandra observations provided an accurate position of the source. Within its error radius, the 1.5 m Russian-Turkish Optical Telescope found a limiting magnitude R(sub c) = 21.5. All such properties are strikingly similar to those of anomalous X-ray pulsars ad soft gamma repeaters, providing strong evidence that the source is a new magnetar. However, archival ASCA and ROSAT observations found the source nearly 2 orders of magnitude fainter. This transient behavior and the observed long-term flux variability of the source in absence of an observed SGR-like burst activity make it the first confirmed transient magnetar and suggest that other neutron stars that share the properties of XTE 51810- 197 during its inactive phase may be unidentified transient magnetars awaiting detection via a similar activity. This implies a larger population of magnetars than previously surmised and a possible evolutionary connection between magnetars and other neutron star families. Subject headings: pulsars: general -pulsars: individual (XTE 51810- 197) - stars: magnetic fields -

Detection of interstellar sodium hydroxide in self-absorption toward the galactic center

NASA Technical Reports Server (NTRS)

Hollis, J. M.; Rhodes, P. J.

1982-01-01

A weak self-absorbed emission line, which is identified as the J = 4-3 transition of sodium hydroxide, has been detected in the direction of Sgr B2(OH). The correspondingly weak Sgr B2(QH) emission line U75406, previously reported as an unidentified spectral feature by other investigators, is consistent with the J = 3-2 transition of sodium hydroxide. This detection may represent the first evidence of a grain reaction formation mechanism for simple metal hydroxides. The detection of H62 Delta toward Orion A is also reported.

Vortex Thermometry for Turbulent Two-Dimensional Fluids.

PubMed

Groszek, Andrew J; Davis, Matthew J; Paganin, David M; Helmerson, Kristian; Simula, Tapio P

2018-01-19

We introduce a new method of statistical analysis to characterize the dynamics of turbulent fluids in two dimensions. We establish that, in equilibrium, the vortex distributions can be uniquely connected to the temperature of the vortex gas, and we apply this vortex thermometry to characterize simulations of decaying superfluid turbulence. We confirm the hypothesis of vortex evaporative heating leading to Onsager vortices proposed in Phys. Rev. Lett. 113, 165302 (2014)PRLTAO0031-900710.1103/PhysRevLett.113.165302, and we find previously unidentified vortex power-law distributions that emerge from the dynamics.

AHSP: a novel hemoglobin helper

PubMed Central

Bank, Arthur

2007-01-01

Recently, the small protein α hemoglobin–stabilizing protein (AHSP) was identified and found to specifically bind α-globin, stabilize its structure, and limit the toxic effects of excess α-globin, which are manifest in the inherited blood disorder β thalassemia. In this issue of the JCI, Yu, Weiss, and colleagues show that AHSP is also critical to the formation and stabilization of normal amounts of hemoglobin, even when α-globin is deficient, indicating unique and previously unidentified roles for this molecule (see the related article beginning on page 1856). PMID:17607349

Copper isotope signatures in modern marine sediments

NASA Astrophysics Data System (ADS)

Little, Susan H.; Vance, Derek; McManus, James; Severmann, Silke; Lyons, Timothy W.

2017-09-01

The development of metal stable isotopes as tools in paleoceanography requires a thorough understanding of their modern marine cycling. To date, no Cu isotope data has been published for modern sediments deposited under low oxygen conditions. We present data encompassing a broad spectrum of hydrographic and redox regimes, including continental margin and euxinic (sulphide-containing) settings. Taken together with previously published data from oxic settings, these data indicate that the modern oceanic sink for Cu has a surprisingly homogeneous isotopic composition of about +0.3‰ (δ65Cu, relative to NIST SRM976). We suggest that this signature reflects one of two specific water-column processes: (1) an equilibrium isotope fractionation between soluble, isotopically heavy, Cu complexed to strong organic ligands and an isotopically light pool sorbed to particles that deliver Cu to the sediment, or (2) an equilibrium isotope fractionation between the same isotopically heavy ligand-bound pool and the particle reactive free Cu2+ species, with the latter being scavenged by particulates and thereby delivered to the sediment. An output flux of about +0.3‰ into sediments is isotopically light relative to the known inputs to the ocean (at around +0.6‰) and the seawater value of +0.6 to +0.9‰, suggesting the presence of an as yet unidentified isotopically light source of Cu to the oceans. We hypothesize that this source may be hydrothermal, or may result from the partial dissolution of continentally derived particles.

Investigating a population of infrared-bright gamma-ray burst host galaxies

NASA Astrophysics Data System (ADS)

Chrimes, Ashley A.; Stanway, Elizabeth R.; Levan, Andrew J.; Davies, Luke J. M.; Angus, Charlotte R.; Greis, Stephanie M. L.

2018-07-01

We identify and explore the properties of an infrared-bright gamma-ray burst (GRB) host population. Candidate hosts are selected by coincidence with sources in WISE, with matching to random coordinates and a false alarm probability analysis showing that the contamination fraction is ˜0.5. This methodology has already identified the host galaxy of GRB 080517. We combine survey photometry from Pan-STARRS, SDSS, APASS, 2MASS, GALEX, and WISE with our own WHT/ACAM and VLT/X-shooter observations to classify the candidates and identify interlopers. Galaxy SED fitting is performed using MAGPHYS, in addition to stellar template fitting, yielding 13 possible IR-bright hosts. A further seven candidates are identified from the previously published work. We report a candidate host for GRB 061002, previously unidentified as such. The remainder of the galaxies have already been noted as potential hosts. Comparing the IR-bright population properties including redshift z, stellar mass M⋆, star formation rate SFR, and V-band attenuation AV to GRB host catalogues in the literature, we find that the infrared-bright population is biased towards low z, high M⋆, and high AV. This naturally arises from their initial selection - local and dusty galaxies are more likely to have the required IR flux to be detected in WISE. We conclude that while IR-bright GRB hosts are not a physically distinct class, they are useful for constraining existing GRB host populations, particularly for long GRBs.

Undocumented water column sink for cadmium in open ocean oxygen-deficient zones

PubMed Central

Janssen, David J.; Conway, Tim M.; John, Seth G.; Christian, James R.; Kramer, Dennis I.; Pedersen, Tom F.; Cullen, Jay T.

2014-01-01

Cadmium (Cd) is a micronutrient and a tracer of biological productivity and circulation in the ocean. The correlation between dissolved Cd and the major algal nutrients in seawater has led to the use of Cd preserved in microfossils to constrain past ocean nutrient distributions. However, linking Cd to marine biological processes requires constraints on marine sources and sinks of Cd. Here, we show a decoupling between Cd and major nutrients within oxygen-deficient zones (ODZs) in both the Northeast Pacific and North Atlantic Oceans, which we attribute to Cd sulfide (CdS) precipitation in euxinic microenvironments around sinking biological particles. We find that dissolved Cd correlates well with dissolved phosphate in oxygenated waters, but is depleted compared with phosphate in ODZs. Additionally, suspended particles from the North Atlantic show high Cd content and light Cd stable isotope ratios within the ODZ, indicative of CdS precipitation. Globally, we calculate that CdS precipitation in ODZs is an important, and to our knowledge a previously undocumented marine sink of Cd. Our results suggest that water column oxygen depletion has a substantial impact on Cd biogeochemical cycling, impacting the global relationship between Cd and major nutrients and suggesting that Cd may be a previously unidentified tracer for water column oxygen deficiency on geological timescales. Similar depletions of copper and zinc in the Northeast Pacific indicate that sulfide precipitation in ODZs may also have an influence on the global distribution of other trace metals. PMID:24778239

Undocumented water column sink for cadmium in open ocean oxygen-deficient zones.

PubMed

Janssen, David J; Conway, Tim M; John, Seth G; Christian, James R; Kramer, Dennis I; Pedersen, Tom F; Cullen, Jay T

2014-05-13

Cadmium (Cd) is a micronutrient and a tracer of biological productivity and circulation in the ocean. The correlation between dissolved Cd and the major algal nutrients in seawater has led to the use of Cd preserved in microfossils to constrain past ocean nutrient distributions. However, linking Cd to marine biological processes requires constraints on marine sources and sinks of Cd. Here, we show a decoupling between Cd and major nutrients within oxygen-deficient zones (ODZs) in both the Northeast Pacific and North Atlantic Oceans, which we attribute to Cd sulfide (CdS) precipitation in euxinic microenvironments around sinking biological particles. We find that dissolved Cd correlates well with dissolved phosphate in oxygenated waters, but is depleted compared with phosphate in ODZs. Additionally, suspended particles from the North Atlantic show high Cd content and light Cd stable isotope ratios within the ODZ, indicative of CdS precipitation. Globally, we calculate that CdS precipitation in ODZs is an important, and to our knowledge a previously undocumented marine sink of Cd. Our results suggest that water column oxygen depletion has a substantial impact on Cd biogeochemical cycling, impacting the global relationship between Cd and major nutrients and suggesting that Cd may be a previously unidentified tracer for water column oxygen deficiency on geological timescales. Similar depletions of copper and zinc in the Northeast Pacific indicate that sulfide precipitation in ODZs may also have an influence on the global distribution of other trace metals.

Investigating a population of infrared-bright gamma-ray burst host galaxies

NASA Astrophysics Data System (ADS)

Chrimes, Ashley A.; Stanway, Elizabeth R.; Levan, Andrew J.; Davies, Luke J. M.; Angus, Charlotte R.; Greis, Stephanie M. L.

2018-04-01

We identify and explore the properties of an infrared-bright gamma-ray burst (GRB) host population. Candidate hosts are selected by coincidence with sources in WISE, with matching to random coordinates and a false alarm probability analysis showing that the contamination fraction is ˜ 0.5. This methodology has already identified the host galaxy of GRB 080517. We combine survey photometry from Pan-STARRS, SDSS, APASS, 2MASS, GALEX and WISE with our own WHT/ACAM and VLT/X-shooter observations to classify the candidates and identify interlopers. Galaxy SED fitting is performed using MAGPHYS, in addition to stellar template fitting, yielding 13 possible IR-bright hosts. A further 7 candidates are identified from previously published work. We report a candidate host for GRB 061002, previously unidentified as such. The remainder of the galaxies have already been noted as potential hosts. Comparing the IR-bright population properties including redshift z, stellar mass M⋆, star formation rate SFR and V-band attenuation AV to GRB host catalogues in the literature, we find that the infrared-bright population is biased toward low z, high M⋆ and high AV. This naturally arises from their initial selection - local and dusty galaxies are more likely to have the required IR flux to be detected in WISE. We conclude that while IR-bright GRB hosts are not a physically distinct class, they are useful for constraining existing GRB host populations, particularly for long GRBs.

Clostridium pabulibutyricum sp. nov., a butyric-acid-producing organism isolated from high-moisture grass silage.

PubMed

Kobayashi, Hisami; Nakasato, Takuya; Sakamoto, Mitsuo; Ohtani, Yoshihisa; Terada, Fuminori; Sakai, Ken; Ohkuma, Moriya; Tohno, Masanori

2017-12-01

A Gram-stain-variable, strictly anaerobic, rod-shaped, catalase-negative and endospore-forming bacterial strain, designated MJC39 T , was isolated from grass silage preserved in Hokkaido, Japan. Growth occurred at 20-42 °C, pH 5.0-7.0 and NaCl concentrations up to 2 % (w/v). The isolated strain MJC39 T produced butyric acid in peptone yeast extract medium with glucose. The DNA G+C content of strain MJC39 T was 34.4±0.2 mol%. The major cellular fatty acids (>10 %) were C14 : 0, C16 : 0 and summed feature 3 (including C16 : 1ω7c/C16 : 1ω6c). No respiratory quinones were detected. The polar lipids of strain MJC39 T were phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, one unidentified lipid, one unidentified aminolipid, two unidentified glycolipids, one unidentified phospholipid, one unidentified aminoglycolipid and one unidentified phosphoaminoglycolipid. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain MJC39 T was a member of the genus Clostridium and is closely related to Clostridium tyrobutyricum JCM 11008 T (95.8 % similarity) and Clostridium algifaecis MB9-7 T (95.5 % similarity). Based on the genotypic, phenotypic and chemotaxonomic characteristics, strain MJC39 T represents a novel species of the genus Clostridium, for which the name Clostridium pabulibutyricum sp. nov. is proposed. The type strain is MJC39 T (=JCM 31506 T =DSM 103944 T ).

Utilization of Dimethyl Sulfide as a Sulfur Source with the Aid of Light by Marinobacterium sp. Strain DMS-S1

PubMed Central

Fuse, Hiroyuki; Takimura, Osamu; Murakami, Katsuji; Yamaoka, Yukiho; Omori, Toshio

2000-01-01

Strain DMS-S1 isolated from seawater was able to utilize dimethyl sulfide (DMS) as a sulfur source only in the presence of light in a sulfur-lacking medium. Phylogenetic analysis based on 16S ribosomal DNA genes indicated that the strain was closely related to Marinobacterium georgiense. The strain produced dimethyl sulfoxide (DMSO), which was a main metabolite, and small amounts of formate and formaldehyde when grown on DMS as the sole sulfur source. The cells of the strain grown with succinate as a carbon source were able to use methyl mercaptan or methanesulfonate besides DMS but not DMSO or dimethyl sulfone as a sole sulfur source. DMS was transformed to DMSO primarily at wavelengths between 380 and 480 nm by heat-stable photosensitizers released by the strain. DMS was also degraded to formaldehyde in the presence of light by unidentified heat-stable factors released by the strain, and it appeared that strain DMS-S1 used the degradation products, which should be sulfite, sulfate, or methanesulfonate, as sulfur sources. PMID:11097944

Middle Miocene vertebrates from the Amazonian Madre de Dios Subandean Zone, Perú

NASA Astrophysics Data System (ADS)

Antoine, Pierre-Olivier; Roddaz, Martin; Brichau, Stéphanie; Tejada-Lara, Julia; Salas-Gismondi, Rodolfo; Altamirano, Ali; Louterbach, Mélanie; Lambs, Luc; Otto, Thierry; Brusset, Stéphane

2013-03-01

A new middle Miocene vertebrate fauna from Peruvian Amazonia is described. It yields the marsupials Sipalocyon sp. (Hathliacynidae) and Marmosa (Micoureus) cf. laventica (Didelphidae), as well as an unidentified glyptodontine xenarthran and the rodents Guiomys sp. (Caviidae), “Scleromys” sp., cf. quadrangulatus-schurmanni-colombianus (Dinomyidae), an unidentified acaremyid, and cf. Microsteiromys sp. (Erethizontidae). Apatite Fission Track provides a detrital age (17.1 ± 2.4 Ma) for the locality, slightly older than its inferred biochronological age (Colloncuran-early Laventan South American Land Mammal Ages: ˜15.6-13.0 Ma). Put together, both the mammalian assemblage and lithology of the fossil-bearing level point to a mixture of tropical rainforest environment and more open habitats under a monsoonal-like tropical climate. The fully fluvial origin of the concerned sedimentary sequence suggests that the Amazonian Madre de Dios Subandean Zone was not part of the Pebas mega-wetland System by middle Miocene times. This new assemblage seems to reveal a previously undocumented “spatiotemporal transition” between the late early Miocene assemblages from high latitudes (Patagonia and Southern Chile) and the late middle Miocene faunas of low latitudes (Colombia, Perú, Venezuela, and ?Brazil).

Endocrine active chemicals and endocrine disruption in Minnesota streams and lakes: implications for aquatic resources, 1994-2008

USGS Publications Warehouse

Lee, Kathy E.; Schoenfuss, Heiko L.; Barber, Larry B.; Writer, Jeff H.; Blazer, Vicki; Keisling, Richard L.; Ferrey, Mark L.

2010-01-01

Although these studies indicate that wastewater-treatment plant effluent is a conduit for endocrine active chemicals to surface waters, endocrine active chemicals also were present in surface waters with no obvious wastewater-treatment plant effluent sources. Endocrine active chemicals were detected and indicators of endocrine disruption in fish were measured at numerous sites upstream from discharge of wastewater-treatment plant effluent. These observations indicate that other unidentified sources of endocrine active chemicals exist, such as runoff from land surfaces, atmospheric deposition, inputs from onsite septic systems, or other groundwater sources. Alternatively, some endocrine active chemicals may not yet have been identified or measured. The presence of biological indicators of endocrine disruption in male fish indicates that the fish are exposed to endocrine active chemicals. However indicators of endocrine disruption in male fish does not indicate an effect on fish reproduction or changes in fish populations.

Exploring the nature of the unidentified very-high-energy gamma-ray source HESS J1507-622

NASA Astrophysics Data System (ADS)

Domainko, W.; Ohm, S.

2012-09-01

Context. Several extended sources of very-high-energy (VHE; E > 100 GeV) gamma rays have been found that lack counterparts belonging to an established class of VHE gamma-ray emitters. Aims: The nature of the first unidentified VHE gamma-ray source with significant angular offset from the Galactic plane of 3.5°, HESS J1507-622, is explored. Methods.Fermi-LAT data in the high-energy (HE, 100 MeV < E < 100 GeV) gamma-ray range collected over 34 month are used to describe the spectral energy distribution (SED) of the source. Additionally, implications of the off-plane location of the source for a leptonic and hadronic gamma-ray emission model are investigated. Results: HESS J1507-622 is detected in the Fermi energy range and its spectrum is best described by a power law in energy with Γ = 1.7 ± 0.1stat ± 0.2sys and integral flux between (0.3-300) GeV of F = (2.0 ± 0.5stat ± 1.0sys) × 10-9 cm-2 s-1. The SED constructed from the Fermi and H.E.S.S. data for this source does not support a smooth power-law continuation from the VHE to the HE gamma-ray range. With the available data it is not possible to discriminate between a hadronic and a leptonic scenario for HESS J1507-622. The location and compactness of the source indicate a considerable physical offset from the Galactic plane for this object. In case of a multiple-kpc distance, this challenges a pulsar wind nebula (PWN) origin for HESS J1507-622 since the time of travel for a pulsar born in the Galactic disk to reach such a location would exceed the inverse Compton (IC) cooling time of electrons that are energetic enough to produce VHE gamma-rays. However, an origin of this gamma-ray source connected to a pulsar that was born off the Galactic plane in the explosion of a hypervelocity star cannot be excluded. Conclusions: The nature of HESS J1507-622 is still unknown to date, and a PWN scenario cannot be ruled out in general. On the contrary HESS J1507-622 could be the first discovered representative of a population of spatially extended VHE gamma-ray emitters with HE gamma-ray counterpart that are located at considerable offsets from the Galactic plane. Future surveys in the VHE gamma-ray range are necessary to probe the presence or absence of such a source population.

ISM gas studies towards the TeV PWN HESS J1825-137 and northern region

NASA Astrophysics Data System (ADS)

Voisin, F.; Rowell, G.; Burton, M. G.; Walsh, A.; Fukui, Y.; Aharonian, F.

2016-05-01

HESS J1825-137 is a pulsar wind nebula (PWN) whose TeV emission extends across ˜1 . Its large asymmetric shape indicates that its progenitor supernova interacted with a molecular cloud located in the north of the PWN as detected by previous CO Galactic survey (e.g. Lemiere, Terrier & Djannati-Ataï). Here, we provide a detailed picture of the interstellar medium (ISM) towards the region north of HESS J1825-137, with the analysis of the dense molecular gas from our 7 and 12 mm Mopra survey and the more diffuse molecular gas from the Nanten CO(1-0) and GRS 13CO(1-0) surveys. Our focus is the possible association between HESS J1825-137 and the unidentified TeV source to the north, HESS J1826-130. We report several dense molecular regions whose kinematic distance matched the dispersion measured distance of the pulsar. Among them, the dense molecular gas located at (RA, Dec.) = (18h421h,-13.282°) shows enhanced turbulence and we suggest that the velocity structure in this region may be explained by a cloud-cloud collision scenario. Furthermore, the presence of a H α rim may be the first evidence of the progenitor supernova remnant (SNR) of the pulsar PSR J1826-1334 as the distance between the H α rim and the TeV source matched with the predicted SNR radius RSNR ˜ 120 pc. From our ISM study, we identify a few plausible origins of the HESS J1826-130 emission, including the progenitor SNR of PSR J1826-1334 and the PWN G018.5-0.4 powered by PSR J1826-1256. A deeper TeV study however, is required to fully identify the origin of this mysterious TeV source.

The role of the dentist in identifying missing and unidentified persons.

PubMed

Riley, Amber D

2015-01-01

The longer a person is missing, the more profound the need for dental records becomes. In 2013, there were >84,000 missing persons and >8,000 unidentified persons registered in the National Crime Information Center (NCIC) database. Tens of thousands of families are left without answers or closure, always maintaining hope that their relative will be located. Law enforcement needs the cooperation of organized dentistry to procure dental records, translate their findings, and upload them into the NCIC database for cross-matching with unidentified person records created by medical examiner and coroner departments across the United States and Canada.

GLAST Science Across Wavelengths

NASA Astrophysics Data System (ADS)

Blandford, R. D.

2006-12-01

The GLAST satellites is almost guaranteed to revolutionize GeV gamma ray astronomy because of the great discoveries that are being made at hard X-ray energy by the Suzaku and Swift satellites and in the TeV range using the H.E.S.S. and Magic telescopes. Unidentified EGRET sources are likely to be identified and new and fainter sources will be found. Known classes of sources blazars, pulsars, gamma ray bursts, supernova remnants, binary X-ray sources and so on will be monitored in much greater detail. Finally, there is the need to limit or even detect dark matter through its annihilation signature. The science that will emerge from GLAST will be determined in large measure by the effort that is put into multiwavelength observing. This will require significant commitments of observing time for monitoring pulsar arrival times, measuring faint galaxy spectra, detecting GeV gamma rays gamma ray bursts and so on. In this talk I will attempt to summarize current thinking on the GLAST multi-wavelength observing program and propose some new approaches.

The Third EGRET Catalog of High-Energy Gamma-Ray Sources

NASA Technical Reports Server (NTRS)

Hartman, R. C.; Bertsch, D. L.; Bloom, S. D.; Chen, A. W.; Deines-Jones, P.; Esposito, J. A.; Fichtel, C. E.; Friedlander, D. P.; Hunter, S. D.; McDonald, L. M.;

VLA observations of unidentified Leiden-Berkeley Deep-Survey sources - Luminosity and redshift dependence of spectral properties

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kapahi, V.K.; Kulkarni, V.K.

1990-05-01

VLA observations of a complete subset of the Leiden-Berkeley Deep Survey sources that have S(1.4 GHz) greater than 10 mJy and are not optically identified down to F=22 mag are reported. By comparing the spectral and structural properties of the sources with samples from the literature, an attempt was made to disentangle the luminosity and redshift dependence of the spectral indices of extended emission in radio galaxies and of the incidence of compact steep-spectrum sources. It is found that the fraction of compact sources among those with a steep spectrum is related primarily to redshift, being much larger at highmore » redshifts for sources of similar radio luminosity. Only a weak and marginally significant dependence of spectral indices of the extended sources on luminosity and redshift is found in samples selected at 1.4 and 2.7 GHz. It is pointed out that the much stronger correlation of spectral indices with luminosity may be arising partly from spectral curvature, and partly due to the preferential inclusion of very steep-spectrum sources from high redshift in low-frequency surveys. 54 refs.« less

Unveiling the nature of two unidentified EGRET blazar candidates through spectroscopic observations

NASA Astrophysics Data System (ADS)

Nkundabakura, P.; Meintjes, P. J.

2012-11-01

Studies using the Energetic Gamma-Ray Experiment Telescope (EGRET) revealed that blazars [flat-spectrum radio quasars (FSRQs) and BL Lac objects] emit most of their luminosity in the high-energy gamma-ray (E > 100 MeV) range. From the 271 sources observed by EGRET, 131 are still unidentified. A systematic search is conducted to identify possible high-energy gamma-ray blazars among the unidentified EGRET population. Based upon multiwavelength emission properties, 13 extragalactic radio sources were selected in the EGRET error boxes for further investigation. From the above-mentioned sample, results of a multiwavelength follow-up of two EGRET sources, 3EG J0821-5814 and 3EG J0706-3837, are presented. These sources are associated with their radio counterparts PKS J0820-5705 and PMN J0710-3850, respectively. Spectroscopic observations utilizing the SOAR/Goodman spectrograph at the Cerro Tololo Inter-American Observatory in Chile reveal a spectrum of PKS J0820-5705 that corresponds to that of a radio-loud active galactic nucleus (FSRQ) with redshift z = 0.06 ± 0.01, while the visibility of wide and narrow emission lines in the spectrum of PMN J0710-3850 resembles that of a low-ionization nuclear emission-line region (LINER) or type 1 Seyfert galaxy at z = 0.129 ± 0.001. The observed Ca II K&H lines depression ratio at 4000 Å showed a shallow depression of 8.8 ± 2.5 per cent for PKS J0820-5705 and 80 ± 1 per cent for PMN J0710-3850, suggesting the presence of a strong non-thermal optical contribution in PKS J0820-5705, which clearly distinguishes its spectrum from that of a radio galaxy. The weaker optical non-thermal contribution for PMN J0710-3850 is in accordance with that expected of a LINER. For PMN J0710-3850 the line flux ratios [O III] λ5007/Hβ < 3 and [N II] λ6583/Hα > 0.6 which are in agreement with the expected ratios of LINERs. However, the absence of [O II] λ3727 implies an anomalously low [O II]/[O III] < 0.5 ratio for a LINER, and agrees more with the ratio observed in type 1 Seyfert galaxies. The average velocities inferred from the Balmer lines range between 2300 and 4300 km s-1, while [O I] and [O III] velocities range between 420 and 490 km s-1, consistent with both LINERs and type 1 Seyfert galaxies. The X-ray luminosities of these two sources are LX ˜ 9 × 1043 erg s-1 (PKS J0820-5705) and LX ˜ 9 × 1042 erg s-1 (PMN J0710-3850), respectively. The X-ray luminosity of PMN J0710-3850 is an order of magnitude higher than the upper limit detected from LINERs, and correlates well with the typical X-ray luminosities observed in type 1 Seyfert galaxies. The X-ray luminosity of PKS J0820-5705 is consistent with the observed luminosity of FSRQs. Optical photometry carried out with the South African Astronomical Observatory 1.0-m telescope displayed 1-2 mag variability in the B and R bands for PKS J0821-5705, on time-scales of hours, while a 5σ variability of the average R-band magnitude could be discerned over a 3 d time span. A smaller 0.5 mag variability is visible in the B band for PMN J0710-3850 on time-scales of hours. No variability was detected in the R band for this source.

Extreme Meteorological Events from documentary sources on old Aragon Kingdom, AD1000-1500. Firsts results after a systematic approach to data availability

NASA Astrophysics Data System (ADS)

Rama, Eduard; Barriendos, Mariano

2010-05-01

Extreme Meteorological Events from documentary sources on old Aragon Kingdom, AD 1000-1500. Firsts results after a systematic approach to data availability Eduard Rama1, Mariano Barriendos2 1 Research Laboratory on Climate, Scientific Park of Barcelona 2 Department of Modern History, University of Barcelona Research on documentary sources focused on detection and reconstruction of climatic data and extreme meteorological events is an activity with notable tradition on palaeoclimatic discipline. Historical climatology offers a good source of climatic and environmental proxy-data. This information covers past centuries establishing good overlapping with instrumental data availability period. Best qualities of historical information are a high temporal resolution, an exact and reliable datation, and complementary information related to environmental and human impacts. Historical climatology offers a large number of data chronologies for Europe covering historiographical periods from Low Middle Age to Contemporary Age (14th to 20th Centuries). Into framework of EU IP Millennium, a systematic research assumed the challenge to collect data from High Middle Age. Documentary sources are discontinuous and scattered, information is not precise and reliable, but all possible original information can be useful to characterize the Warm Medieval Period, most recent climatic period similar to possible climate of next future, at least concerning thermic conditions. Present work shows a systematic effort on documentary sources of Old Aragon Kingdom (actually, spanish regions of Catalonia, Aragon, Valentia and Balearic Islands), collecting extreme weather events for period AD1000-1500. Historical context of Aragon Kingdom was no easy in this period, focused on recovering territory in front of Muslim Kingdoms (Reconsquista) up to 13th Century from North to South. After this, consolidation of modern institutions and urban network took 14-15th Centuries. Data sources has been all medieval chronicles of kingdom institution, early urban chronicles and scattered informations collected by previous historians on bibliographical sources. Firsts results show 512 informations, 15 of them previous to AD1000. Most of data are related to hydrometeorological anomalies: 150 flood events, 101 drought events and 82 storms or sea storms. Other 86 informations concern famines and shortages, events related to unidentified environmental anomalies. Thermic information obtained is divided on 46 events of cold weather or severe snowfall and 5 events related to extreme warm conditions. Finally, 27 data are related to strong wind events. Temporal patterns detected follow general characteristics already known for early Little Ice Age: rainfall anomalies (floods and droughts) increase clearly their frequency during the firsts decades of 14th Century. Other oscillation of strong rainfall variability appear during the second half of 15th Century. It results interesting the low frequency of extreme events during the centuries 11 to 13th.

Mining metadata from unidentified ITS sequences in GenBank: A case study in Inocybe (Basidiomycota)

PubMed Central

2008-01-01

Background The lack of reference sequences from well-identified mycorrhizal fungi often poses a challenge to the inference of taxonomic affiliation of sequences from environmental samples, and many environmental sequences are thus left unidentified. Such unidentified sequences belonging to the widely distributed ectomycorrhizal fungal genus Inocybe (Basidiomycota) were retrieved from GenBank and divided into species that were identified in a phylogenetic context using a reference dataset from an ongoing study of the genus. The sequence metadata of the unidentified Inocybe sequences stored in GenBank, as well as data from the corresponding original papers, were compiled and used to explore the ecology and distribution of the genus. In addition, the relative occurrence of Inocybe was contrasted to that of other mycorrhizal genera. Results Most species of Inocybe were found to have less than 3% intraspecific variability in the ITS2 region of the nuclear ribosomal DNA. This cut-off value was used jointly with phylogenetic analysis to delimit and identify unidentified Inocybe sequences to species level. A total of 177 unidentified Inocybe ITS sequences corresponding to 98 species were recovered, 32% of which were successfully identified to species level in this study. These sequences account for an unexpectedly large proportion of the publicly available unidentified fungal ITS sequences when compared with other mycorrhizal genera. Eight Inocybe species were reported from multiple hosts and some even from hosts forming arbutoid or orchid mycorrhizae. Furthermore, Inocybe sequences have been reported from four continents and in climate zones ranging from cold temperate to equatorial climate. Out of the 19 species found in more than one study, six were found in both Europe and North America and one was found in both Europe and Japan, indicating that at least many north temperate species have a wide distribution. Conclusion Although DNA-based species identification and circumscription are associated with practical and conceptual difficulties, they also offer new possibilities and avenues for research. Metadata assembly holds great potential to synthesize valuable information from community studies for use in a species and taxonomy-oriented framework. PMID:18282272

Spectral Models of Neutron Star Magnetospheres

NASA Technical Reports Server (NTRS)

Romani, Roger W.

1997-01-01

We revisit the association of unidentified Galactic plane EGRET sources with tracers of recent massive star formation and death. Up-to-date catalogs of OB associations, SNR's, young pulsars, H2 regions and young open clusters were used in finding counterparts for a recent list of EGRET sources. It has been argued for some time that EGRET source positions are correlated with SNR's and OB associations as a class; we extend such analyses by finding additional counterparts and assessing the probability of individual source identifications. Among the several scenarios relating EGRET sources to massive stars, we focus on young neutron stars as the origin of the gamma-ray emission. The characteristics of the candidate identifications are compared to the known gamma-ray pulsar sample and to detailed Galactic population syntheses using our outer gap pulsar model of gamma-ray emission. Both the spatial distribution and luminosity function of the candidates are in good agreement with the model predictions; we infer that young pulsars can account for the bulk of the excess low latitude EGRET sources. We show that with this identification, the gamma-ray point sources provide an important new window into the history of recent massive star death in the solar neighborhood.

Unidentified Flying Objects, A Selected Bibliography.

ERIC Educational Resources Information Center

Rodgers, Kay, Comp.

This bibliography, intended for the general reader, provides selective coverage of the unidentified flying object (UFO) literature that has appeared since 1969. The coverage is limited to English language works, but does include translations and materials published abroad. Other bibliographies are listed, as are books, congressional and other…

UNIDENTIFIED CATENARY SUSPENSION BRIDGE, SHOWING RIVETED METAL PIERS UNDER CONSTRUCTION. ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

UNIDENTIFIED CATENARY SUSPENSION BRIDGE, SHOWING RIVETED METAL PIERS UNDER CONSTRUCTION. NOTE APPROACH SPANS OF PIPE CONSTRUCTION IN RIGHT BACKGROUND. 3/4 VIEW FROM BELOW. - Clear Fork of Brazos River Suspension Bridge, Spanning Clear Fork of Brazos River at County Route 179, Albany, Shackelford County, TX

METHODS AND TECHNIQUES FOR DEALING WITH THE UNIDENTIFIED FRACTION OF COMPLEX MIXTURES

EPA Science Inventory

For the vast majority of highly complex environmental mixtures to which humans are exposed, significant portions of the mixture are unidentified. Although toxicological data on the mixture itself are desired for risk assessment, such data, even on a similar mixture, are rarely a...

Alternative Fuels Data Center: Maps and Data

Science.gov Websites

vehicles with unidentified fuel types. Data consists of registered vehicles in operation in the United fuel types with small populations, such as methanol and hydrogen vehicles. See relative vehicle completed a conversion. "undefined" values are vehicles with unidentified fuel types. Data

Augmentation of French grunt diet description using combined visual and DNA-based analyses

USGS Publications Warehouse

Hargrove, John S.; Parkyn, Daryl C.; Murie, Debra J.; Demopoulos, Amanda W.J.; Austin, James D.

2012-01-01

Trophic linkages within a coral-reef ecosystem may be difficult to discern in fish species that reside on, but do not forage on, coral reefs. Furthermore, dietary analysis of fish can be difficult in situations where prey is thoroughly macerated, resulting in many visually unrecognisable food items. The present study examined whether the inclusion of a DNA-based method could improve the identification of prey consumed by French grunt, Haemulon flavolineatum, a reef fish that possesses pharyngeal teeth and forages on soft-bodied prey items. Visual analysis indicated that crustaceans were most abundant numerically (38.9%), followed by sipunculans (31.0%) and polychaete worms (5.2%), with a substantial number of unidentified prey (12.7%). For the subset of prey with both visual and molecular data, there was a marked reduction in the number of unidentified sipunculans (visual – 31.1%, combined &ndash 4.4%), unidentified crustaceans (visual &ndash 15.6%, combined &ndash 6.7%), and unidentified taxa (visual &ndash 11.1%, combined &ndash 0.0%). Utilising results from both methodologies resulted in an increased number of prey placed at the family level (visual &ndash 6, combined &ndash 33) and species level (visual &ndash 0, combined &ndash 4). Although more costly than visual analysis alone, our study demonstrated the feasibility of DNA-based identification of visually unidentifiable prey in the stomach contents of fish.

Towards an analytical framework for tailoring supercontinuum generation.

PubMed

Castelló-Lurbe, David; Vermeulen, Nathalie; Silvestre, Enrique

2016-11-14

A fully analytical toolbox for supercontinuum generation relying on scenarios without pulse splitting is presented. Furthermore, starting from the new insights provided by this formalism about the physical nature of direct and cascaded dispersive wave emission, a unified description of this radiation in both normal and anomalous dispersion regimes is derived. Previously unidentified physics of broadband spectra reported in earlier works is successfully explained on this basis. Finally, a foundry-compatible few-millimeters-long silicon waveguide allowing octave-spanning supercontinuum generation pumped at telecom wavelengths in the normal dispersion regime is designed, hence showcasing the potential of this new analytical approach.

Identification of point mutations in clinical Staphylococcus aureus strains that produce small-colony variants auxotrophic for menadione.

PubMed

Dean, Melissa A; Olsen, Randall J; Long, S Wesley; Rosato, Adriana E; Musser, James M

2014-04-01

Staphylococcus aureus small-colony variants (SCVs) are implicated in chronic and relapsing infections that are difficult to diagnose and treat. Despite many years of study, the underlying molecular mechanisms and virulence effect of the small-colony phenotype remain incompletely understood. We sequenced the genomes of five S. aureus SCV strains recovered from human patients and discovered previously unidentified nonsynonymous point mutations in three genes encoding proteins in the menadione biosynthesis pathway. Analysis of genetic revertants and complementation with wild-type alleles confirmed that these mutations caused the SCV phenotype and decreased virulence for mice.

The usefulness of assessing suggestibility and compliance in prisoners with unidentified intellectual disabilities.

PubMed

Søndenaa, Erik; Rasmussen, Kirsten; Palmstierna, Tom; Nøttestad, Jim Aage

2010-10-01

This present study explored the relationship of interrogative suggestibility (n = 133) and compliance (n = 118) to intellectual functioning among prison inmates. The Norwegian versions of the Gudjonsson Suggestibility Scale (GSS) and the Gudjonsson Compliance Scale (GCS) were used. The results supported previous findings of a negative correlation between the Gudjonsson scales and IQ, and the scales were found useful throughout the IQ range. The impact of a memory artifact was discussed in the light of recent studies and criticism of the scales. © 2010 The Authors. Scandinavian Journal of Psychology © 2010 The Scandinavian Psychological Associations.

Multielectron spectroscopy: energy levels of K n+ and Rb n+ ions (n = 2, 3, 4)

NASA Astrophysics Data System (ADS)

Khalal, M. A.; Soronen, J.; Jänkälä, K.; Huttula, S.-M.; Huttula, M.; Bizau, J.-M.; Cubaynes, D.; Guilbaud, S.; Ito, K.; Andric, L.; Feng, J.; Lablanquie, P.; Palaudoux, J.; Penent, F.

2017-11-01

A magnetic bottle time-of-flight spectrometer has been used to perform spectroscopy of K n+ and Rb n+ states with ionization degrees n of 2, 3 and 4. Energy levels are directly measured by detecting in coincidence the n electrons that are emitted as a result of single photon absorption. Experimental results are compared with the energies from the NIST atomic database and ab initio multiconfiguration Dirac-Fock calculations. Previously unidentified 3p 4(3P)3d 1 4D energy levels of K2+ are assigned.

Identification of a Divergent Environmental DNA Sequence Clade Using the Phylogeny of Gregarine Parasites (Apicomplexa) from Crustacean Hosts

PubMed Central

Rueckert, Sonja; Simdyanov, Timur G.; Aleoshin, Vladimir V.; Leander, Brian S.

2011-01-01

Background Environmental SSU rDNA surveys have significantly improved our understanding of microeukaryotic diversity. Many of the sequences acquired using this approach are closely related to lineages previously characterized at both morphological and molecular levels, making interpretation of these data relatively straightforward. Some sequences, by contrast, appear to be phylogenetic orphans and are sometimes inferred to represent “novel lineages” of unknown cellular identity. Consequently, interpretation of environmental DNA surveys of cellular diversity rely on an adequately comprehensive database of DNA sequences derived from identified species. Several major taxa of microeukaryotes, however, are still very poorly represented in these databases, and this is especially true for diverse groups of single-celled parasites, such as gregarine apicomplexans. Methodology/Principal Findings This study attempts to address this paucity of DNA sequence data by characterizing four different gregarine species, isolated from the intestines of crustaceans, at both morphological and molecular levels: Thiriotia pugettiae sp. n. from the graceful kelp crab (Pugettia gracilis), Cephaloidophora cf. communis from two different species of barnacles (Balanus glandula and B. balanus), Heliospora cf. longissima from two different species of freshwater amphipods (Eulimnogammarus verrucosus and E. vittatus), and Heliospora caprellae comb. n. from a skeleton shrimp (Caprella alaskana). SSU rDNA sequences were acquired from isolates of these gregarine species and added to a global apicomplexan alignment containing all major groups of gregarines characterized so far. Molecular phylogenetic analyses of these data demonstrated that all of the gregarines collected from crustacean hosts formed a very strongly supported clade with 48 previously unidentified environmental DNA sequences. Conclusions/Significance This expanded molecular phylogenetic context enabled us to establish a major clade of intestinal gregarine parasites and infer the cellular identities of several previously unidentified environmental SSU rDNA sequences, including several sequences that have formerly been discussed broadly in the literature as a suspected “novel” lineage of eukaryotes. PMID:21483868

1. Photocopy of photograph showing unidentified launch area with personnel ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

1. Photocopy of photograph showing unidentified launch area with personnel door, decontamination shower and Ajax missiles from photo archives at U. S. Institute for Military History, Carlisle Barracks, Carlisle, PA, no date - NIKE Missile Battery PR-79, East Windsor Road south of State Route 101, Foster, Providence County, RI

43 CFR 10.11 - Disposition of culturally unidentifiable human remains.

Code of Federal Regulations, 2013 CFR

2013-10-01

... human remains. 10.11 Section 10.11 Public Lands: Interior Office of the Secretary of the Interior NATIVE AMERICAN GRAVES PROTECTION AND REPATRIATION REGULATIONS Human Remains, Funerary Objects, Sacred Objects, or... unidentifiable human remains. (a) General. This section implements section 8(c)(5) of the Act and applies to...

43 CFR 10.11 - Disposition of culturally unidentifiable human remains.

Code of Federal Regulations, 2014 CFR

2014-10-01

... human remains. 10.11 Section 10.11 Public Lands: Interior Office of the Secretary of the Interior NATIVE AMERICAN GRAVES PROTECTION AND REPATRIATION REGULATIONS Human Remains, Funerary Objects, Sacred Objects, or... unidentifiable human remains. (a) General. This section implements section 8(c)(5) of the Act and applies to...

43 CFR 10.11 - Disposition of culturally unidentifiable human remains.

Code of Federal Regulations, 2012 CFR

2012-10-01

... human remains. 10.11 Section 10.11 Public Lands: Interior Office of the Secretary of the Interior NATIVE AMERICAN GRAVES PROTECTION AND REPATRIATION REGULATIONS Human Remains, Funerary Objects, Sacred Objects, or... unidentifiable human remains. (a) General. This section implements section 8(c)(5) of the Act and applies to...

The faint X-ray sources in and out of omega Centauri: X-ray observations and optical identifications

NASA Technical Reports Server (NTRS)

Cool, Adrienne M.; Grindlay, Jonathan E.; Bailyn, Charles D.; Callanan, Paul J.; Hertz, Paul

1995-01-01

We present the results of an observation of the globular cluster omega Cen (NGC 5139) with the Einstein high-resolution imager (HRI). Of the five low-luminosity X-ray sources toward omega Cen which were first identified with the Einstein imaging proportional counter (IPC) (Hertz and Grindlay 1983a, b), two are detected in the Einstein HRI observation: IPC sources A and D. These detections provide source positions accurate to 3 sec-4 sec; the positions are confirmed in a ROSAT HRI observation reported here. Using CCD photometry and spectroscopy, we have identified both sources as foreground dwarf M stars with emission lines (dMe). The chance projection of two Mde stars within approximately 13 min of the center of omega Cen is not extraordinary, given the space density of these stellar coronal X-ray sources. We discuss the possible nature of the three as yet unidentified IPC sources toward omega Cen, and consider the constraints that the Einstein observations place on the total population of X-ray sources in this cluster. The integrated luminosity from faint X-ray sources in omega Cen appears to be low relative to both the old open cluster M67 and the post-core-collapse globular, NGC 6397.

Whole genome sequencing of Salmonella Typhimurium illuminates distinct outbreaks caused by an endemic multi-locus variable number tandem repeat analysis type in Australia, 2014.

PubMed

Phillips, Anastasia; Sotomayor, Cristina; Wang, Qinning; Holmes, Nadine; Furlong, Catriona; Ward, Kate; Howard, Peter; Octavia, Sophie; Lan, Ruiting; Sintchenko, Vitali

2016-09-15

Salmonella Typhimurium (STM) is an important cause of foodborne outbreaks worldwide. Subtyping of STM remains critical to outbreak investigation, yet current techniques (e.g. multilocus variable number tandem repeat analysis, MLVA) may provide insufficient discrimination. Whole genome sequencing (WGS) offers potentially greater discriminatory power to support infectious disease surveillance. We performed WGS on 62 STM isolates of a single, endemic MLVA type associated with two epidemiologically independent, food-borne outbreaks along with sporadic cases in New South Wales, Australia, during 2014. Genomes of case and environmental isolates were sequenced using HiSeq (Illumina) and the genetic distance between them was assessed by single nucleotide polymorphism (SNP) analysis. SNP analysis was compared to the epidemiological context. The WGS analysis supported epidemiological evidence and genomes of within-outbreak isolates were nearly identical. Sporadic cases differed from outbreak cases by a small number of SNPs, although their close relationship to outbreak cases may represent an unidentified common food source that may warrant further public health follow up. Previously unrecognised mini-clusters were detected. WGS of STM can discriminate foodborne community outbreaks within a single endemic MLVA clone. Our findings support the translation of WGS into public health laboratory surveillance of salmonellosis.

Isolation from Agricultural Soil and Characterization of a Sphingomonas sp. Able To Mineralize the Phenylurea Herbicide Isoproturon

PubMed Central

Sørensen, Sebastian R.; Ronen, Zeev; Aamand, Jens

2001-01-01

A soil bacterium (designated strain SRS2) able to metabolize the phenylurea herbicide isoproturon, 3-(4-isopropylphenyl)-1,1-dimethylurea (IPU), was isolated from a previously IPU-treated agricultural soil. Based on a partial analysis of the 16S rRNA gene and the cellular fatty acids, the strain was identified as a Sphingomonas sp. within the α-subdivision of the proteobacteria. Strain SRS2 was able to mineralize IPU when provided as a source of carbon, nitrogen, and energy. Supplementing the medium with a mixture of amino acids considerably enhanced IPU mineralization. Mineralization of IPU was accompanied by transient accumulation of the metabolites 3-(4-isopropylphenyl)-1-methylurea, 3-(4-isopropylphenyl)-urea, and 4-isopropyl-aniline identified by high-performance liquid chromatography analysis, thus indicating a metabolic pathway initiated by two successive N-demethylations, followed by cleavage of the urea side chain and finally by mineralization of the phenyl structure. Strain SRS2 also transformed the dimethylurea-substituted herbicides diuron and chlorotoluron, giving rise to as-yet-unidentified products. In addition, no degradation of the methoxy-methylurea-substituted herbicide linuron was observed. This report is the first characterization of a pure bacterial culture able to mineralize IPU. PMID:11722885

Big city Bombus: using natural history and land-use history to find significant environmental drivers in bumble-bee declines in urban development.

PubMed

Glaum, Paul; Simao, Maria-Carolina; Vaidya, Chatura; Fitch, Gordon; Iulinao, Benjamin

2017-05-01

Native bee populations are critical sources of pollination. Unfortunately, native bees are declining in abundance and diversity. Much of this decline comes from human land-use change. While the effects of large-scale agriculture on native bees are relatively well understood, the effects of urban development are less clear. Understanding urbanity's effect on native bees requires consideration of specific characteristics of both particular bee species and their urban landscape. We surveyed bumble-bee ( Bombus spp.) abundance and diversity in gardens across multiple urban centres in southeastern Michigan. There are significant declines in Bombus abundance and diversity associated with urban development when measured on scales in-line with Bombus flight ability. These declines are entirely driven by declines in females; males showed no response to urbanization. We hypothesize that this is owing to differing foraging strategies between the sexes, and it suggests reduced Bombus colony density in more urban areas. While urbanity reduced Bombus prevalence, results in Detroit imply that 'shrinking cities' potentially offer unique urban paradigms that must be considered when studying wild bee ecology. Results show previously unidentified differences in the effects of urbanity on female and male bumble-bee populations and suggest that urban landscapes can be managed to support native bee conservation.

Big city Bombus: using natural history and land-use history to find significant environmental drivers in bumble-bee declines in urban development

PubMed Central

Simao, Maria-Carolina; Vaidya, Chatura; Fitch, Gordon; Iulinao, Benjamin

2017-01-01

Native bee populations are critical sources of pollination. Unfortunately, native bees are declining in abundance and diversity. Much of this decline comes from human land-use change. While the effects of large-scale agriculture on native bees are relatively well understood, the effects of urban development are less clear. Understanding urbanity's effect on native bees requires consideration of specific characteristics of both particular bee species and their urban landscape. We surveyed bumble-bee (Bombus spp.) abundance and diversity in gardens across multiple urban centres in southeastern Michigan. There are significant declines in Bombus abundance and diversity associated with urban development when measured on scales in-line with Bombus flight ability. These declines are entirely driven by declines in females; males showed no response to urbanization. We hypothesize that this is owing to differing foraging strategies between the sexes, and it suggests reduced Bombus colony density in more urban areas. While urbanity reduced Bombus prevalence, results in Detroit imply that ‘shrinking cities’ potentially offer unique urban paradigms that must be considered when studying wild bee ecology. Results show previously unidentified differences in the effects of urbanity on female and male bumble-bee populations and suggest that urban landscapes can be managed to support native bee conservation. PMID:28573023

New Evidence on Self-Affirmation Effects and Theorized Sources of Heterogeneity from Large-Scale Replications

PubMed Central

Hanselman, Paul; Rozek, Christopher S.; Grigg, Jeffrey; Borman, Geoffrey D.

2016-01-01

Brief, targeted self-affirmation writing exercises have recently been offered as a way to reduce racial achievement gaps, but evidence about their effects in educational settings is mixed, leaving ambiguity about the likely benefits of these strategies if implemented broadly. A key limitation in interpreting these mixed results is that they come from studies conducted by different research teams with different procedures in different settings; it is therefore impossible to isolate whether different effects are the result of theorized heterogeneity, unidentified moderators, or idiosyncratic features of the different studies. We addressed this limitation by conducting a well-powered replication of self-affirmation in a setting where a previous large-scale field experiment demonstrated significant positive impacts, using the same procedures. We found no evidence of effects in this replication study and estimates were precise enough to reject benefits larger than an effect size of 0.10. These null effects were significantly different from persistent benefits in the prior study in the same setting, and extensive testing revealed that currently theorized moderators of self-affirmation effects could not explain the difference. These results highlight the potential fragility of self-affirmation in educational settings when implemented widely and the need for new theory, measures, and evidence about the necessary conditions for self-affirmation success. PMID:28450753

Transcriptome profiling of a Saccharomyces cerevisiae mutant with a constitutively activated Ras/cAMP pathway.

PubMed

Jones, D L; Petty, J; Hoyle, D C; Hayes, A; Ragni, E; Popolo, L; Oliver, S G; Stateva, L I

2003-12-16

Often changes in gene expression levels have been considered significant only when above/below some arbitrarily chosen threshold. We investigated the effect of applying a purely statistical approach to microarray analysis and demonstrated that small changes in gene expression have biological significance. Whole genome microarray analysis of a pde2Delta mutant, constructed in the Saccharomyces cerevisiae reference strain FY23, revealed altered expression of approximately 11% of protein encoding genes. The mutant, characterized by constitutive activation of the Ras/cAMP pathway, has increased sensitivity to stress, reduced ability to assimilate nonfermentable carbon sources, and some cell wall integrity defects. Applying the Munich Information Centre for Protein Sequences (MIPS) functional categories revealed increased expression of genes related to ribosome biogenesis and downregulation of genes in the cell rescue, defense, cell death and aging category, suggesting a decreased response to stress conditions. A reduced level of gene expression in the unfolded protein response pathway (UPR) was observed. Cell wall genes whose expression was affected by this mutation were also identified. Several of the cAMP-responsive orphan genes, upon further investigation, revealed cell wall functions; others had previously unidentified phenotypes assigned to them. This investigation provides a statistical global transcriptome analysis of the cellular response to constitutive activation of the Ras/cAMP pathway.

Complex organic matter in space: about the chemical composition of carriers of the Unidentified Infrared Bands (UIBs) and protoplanetary emission spectra recorded from certain astrophysical objects.

PubMed

Cataldo, Franco; Keheyan, Yeghis; Heymann, Dieter

2004-02-01

In this communication we present the basic concept that the pure PAHs (Polycyclic Aromatic Hydrocarbons) can be considered only the ideal carriers of the UIBs (Unidentified Infrared Bands), the emission spectra coming from a large variety of astronomical objects. Instead we have proposed that the carriers of UIBs and of protoplanetary nebulae (PPNe) emission spectra are much more complex molecular mixtures possessing also complex chemical structures comparable to certain petroleum fractions obtained from the petroleum refining processes. The demonstration of our proposal is based on the comparison between the emission spectra recorded from the protoplanetary nebulae (PPNe) IRAS 22272+ 5435 and the infrared absorption spectra of certain 'heavy' petroleum fractions. It is shown that the best match with the reference spectrum is achieved by highly aromatic petroleum fractions. It is shown that the selected petroleum fractions used in the present study are able to match the band pattern of anthracite coal. Coal has been proposed previously as a model for the PPNe and UIBs but presents some drawbacks which could be overcome by adopting the petroleum fractions as model for PPNe and UIBs in place of coal. A brief discussion on the formation of the petroleum-like fractions in PPNe objects is included.

VIEW OF PARTIALLY EXCAVATED MILL RUINS LOOKING NORTHWEST SHOWING UNIDENTIFIED ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

VIEW OF PARTIALLY EXCAVATED MILL RUINS LOOKING NORTHWEST SHOWING UNIDENTIFIED PIT IN RIGHT FOREGROUND, MASONRY BASE FOR STEAM ENGINE AND CANE MILL IN LEFT CENTER, PURGING HOUSE AND CHIMNEY IN BACKGROUND - Hacienda Azucarera La Esperanza, Mill (Ruins), 2.65 miles North of PR Route 2 Bridge Over Manati River, Manati, Manati Municipio, PR

14. UNIDENTIFIED CABLESTAYED SUSPENSION BRIDGE WITH TIMBER RAILING OF TEN ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

14. UNIDENTIFIED CABLE-STAYED SUSPENSION BRIDGE WITH TIMBER RAILING OF TEN PANELS AND STONE PIER, SHOWING ELEMENTS SIMILAR TO E.E. RUNYON'S SUSPENSION BRIDGE PATENTS, BUT ALTERNATE CABLE PATTERN. 3/4 VIEW FROM BELOW. - Bluff Dale Suspension Bridge, Spanning Paluxy River at County Route 149, Bluff Dale, Erath County, TX

13. UNIDENTIFIED CABLESTAYED SUSPENSION BRIDGE WITH TIMBER RAILING OF TWELVE ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

13. UNIDENTIFIED CABLE-STAYED SUSPENSION BRIDGE WITH TIMBER RAILING OF TWELVE PANELS, SHOWING CABLE PATTERN SIMILAR TO E.E. RUNYON'S SUSPENSION BRIDGE PATENTS. THE BLUFF DALE SUSPENSION BRIDGE'S CABLES MAY HAVE ORIGINALLY FOLLOWED THIS PATTERN. ELEVATION VIEW. - Bluff Dale Suspension Bridge, Spanning Paluxy River at County Route 149, Bluff Dale, Erath County, TX

NIR Spectroscopic Observation of Massive Galaxies in the Protocluster at z = 3.09

NASA Astrophysics Data System (ADS)

Kubo, Mariko; Yamada, Toru; Ichikawa, Takashi; Kajisawa, Masaru; Matsuda, Yuichi; Tanaka, Ichi

2015-01-01

We present the results of near-infrared spectroscopic observations of the K-band-selected candidate galaxies in the protocluster at z = 3.09 in the SSA22 field. We observed 67 candidates with K AB < 24 and confirmed redshifts of the 39 galaxies at 2.0 < z spec < 3.4. Of the 67 candidates, 24 are certainly protocluster members with 3.04 <= z spec <= 3.12, which are massive red galaxies that have been unidentified in previous optical observations of the SSA22 protocluster. Many distant red galaxies (J - K AB > 1.4), hyper extremely red objects (J - K AB > 2.1), Spitzer MIPS 24 μm sources, active galactic nuclei (AGNs) as well as the counterparts of Lyα blobs and the AzTEC/ASTE 1.1 mm sources in the SSA22 field are also found to be protocluster members. The mass of the SSA22 protocluster is estimated to be ~2-5 × 1014 M ⊙, and this system is plausibly a progenitor of the most massive clusters of galaxies in the current universe. The reddest (J - K AB >= 2.4) protocluster galaxies are massive galaxies with M star ~ 1011 M ⊙ showing quiescent star formation activities and plausibly dominated by old stellar populations. Most of these massive quiescent galaxies host moderately luminous AGNs detected by X-ray. There are no significant differences in the [O III] λ5007/Hβ emission line ratios and [O III] λ5007 line widths and spatial extents of the protocluster galaxies from those of massive galaxies at z ~ 2-3 in the general field.

The Third EGRET Catalog of High-Energy Gamma-Ray Sources

NASA Technical Reports Server (NTRS)

Hartman, R. C.; Bertsch, D. L.; Bloom, S. D.; Chen, A. W.; Deines-Jones, P.; Esposito, J. A.; Fichtel, C. E.; Friedlander, D. P.; Hunter, S. D.; McDonald, L. M.;

Comparison of L-serine uptake by human placental microvillous membrane vesicles and placental villous fragments.

PubMed

Brand, A P; Greenwood, S L; Glazier, J D; Bennett, E J; Godfrey, K M; Sibley, C P; Hanson, M A; Lewis, R M

2010-05-01

Both syncytiotrophoblast microvillous plasma membrane vesicles (MVM) and placental villous fragments are used to characterize the placental uptake of maternal substrate and to investigate changes in uptake associated with pathological conditions. However, the two techniques have not been directly compared. In this study uptake of (14)C-L-serine was compared in placental villous fragments and in MVM prepared from the same placentas. (14)C-L-serine uptake into MVM vesicles was mediated by System L and System A and smaller unidentified Na(+)-dependent and Na(+)-independent components. In villous fragments an unidentified Na(+)-dependent component mediated the majority of (14)C-L-serine uptake followed by System A and System L. The unidentified Na(+)-independent component of L-serine uptake was not detected in villous fragments. The ratio of System A activity to System L activity was similar in villous fragments and MVM vesicles. However, the unidentified Na(+)-dependent component in villous fragments was significantly higher than that in MVM vesicles. This indicates that the main differences in serine uptake mechanisms identified using the two techniques were not due to differences in System A and System L activity but to differences in the unidentified Na(+)-dependent component. This study suggests that uptake of L-serine into MVM vesicles and villous fragments via Systems A and L is comparable, but that this is not true for all components of L-serine uptake. (c) 2010 Elsevier Ltd. All rights reserved.

Mucilaginibacter pedocola sp. nov., isolated from a heavy-metal-contaminated paddy field.

PubMed

Tang, Jingwei; Huang, Jing; Qiao, Zixu; Wang, Rui; Wang, Gejiao

2016-10-01

Strain TBZ30T was isolated from soil of a heavy-metal-contaminated paddy field. Cells of strain TBZ30T were Gram-staining-negative, rod-shaped, non-motile and non-spore-forming. The isolate was strictly aerobic, pink-pigmented, catalase- and oxidase-positive and produced exopolysaccharides. On the basis of 16S rRNA gene phylogeny, strain TBZ30T belonged to the genus Mucilaginibacter and appeared most closely related to Mucilaginibacter gynuensis YC7003T (95.8 %), Mucilaginibacter litoreus BR-18T (95.4 %) and Mucilaginibacter mallensis MP1X4T (95.4 %). Strain TBZ30T contained menaquinone-7 as the only ubiquinone. The main cellular fatty acids included summed feature 3 (C16 : 1ω7c and/or iso-C15 : 0 2-OH), iso-C15 : 0, C16 : 0, iso-C17 : 0 3-OH and C16 : 1ω5c. The polar lipids were phosphatidylethanolamine, an unidentified phospholipid, two unidentified aminophospholipids, four unidentified aminolipids, three unidentified lipids and two unidentified glycolipids. The genomic DNA G+C content was 49.0 mol%. On the basis of polyphasic taxonomy analyses, strain TBZ30T represents a novel species of the genus Mucilaginibacter, for which the name Mucilaginibacter pedocola sp. nov. is proposed. The type strain is TBZ30T (=KCTC 42833T=CCTCC AB 2015301T).

Dutch population specific sex estimation formulae using the proximal femur.

PubMed

Colman, K L; Janssen, M C L; Stull, K E; van Rijn, R R; Oostra, R J; de Boer, H H; van der Merwe, A E

2018-05-01

Sex estimation techniques are frequently applied in forensic anthropological analyses of unidentified human skeletal remains. While morphological sex estimation methods are able to endure population differences, the classification accuracy of metric sex estimation methods are population-specific. No metric sex estimation method currently exists for the Dutch population. The purpose of this study is to create Dutch population specific sex estimation formulae by means of osteometric analyses of the proximal femur. Since the Netherlands lacks a representative contemporary skeletal reference population, 2D plane reconstructions, derived from clinical computed tomography (CT) data, were used as an alternative source for a representative reference sample. The first part of this study assesses the intra- and inter-observer error, or reliability, of twelve measurements of the proximal femur. The technical error of measurement (TEM) and relative TEM (%TEM) were calculated using 26 dry adult femora. In addition, the agreement, or accuracy, between the dry bone and CT-based measurements was determined by percent agreement. Only reliable and accurate measurements were retained for the logistic regression sex estimation formulae; a training set (n=86) was used to create the models while an independent testing set (n=28) was used to validate the models. Due to high levels of multicollinearity, only single variable models were created. Cross-validated classification accuracies ranged from 86% to 92%. The high cross-validated classification accuracies indicate that the developed formulae can contribute to the biological profile and specifically in sex estimation of unidentified human skeletal remains in the Netherlands. Furthermore, the results indicate that clinical CT data can be a valuable alternative source of data when representative skeletal collections are unavailable. Copyright © 2017 Elsevier B.V. All rights reserved.

Optical spectroscopic followup of XMMSL1 J164303.7+653253 in the error box of IGR J16426+6536

NASA Astrophysics Data System (ADS)

Parisi, P.; Masetti, N.; Malizia, A.; Morelli, L.; Mason, E.; Dean, A. J.; Ubertini, P.

2008-10-01

We report on a spectroscopic observation of the optical object USNO-A2.0 1500-06133361 (with J2000 coordinates RA = 16 43 04.07, Dec = +65 32 50.9 and magnitude R ~ 18.9) inside the error circle of the XMM-Newton slew source XMMLS1 J164303.7+653253 (see Ibarra et al., ATel #1397), possibly associated with the unidentified INTEGRAL source IGR J16426+6536 (Bird et al. 2007, ApJS, 170, 175). The observations were performed on 2008 February 04, starting at 06:10 UT, with DOLORES, a focal reducer instrument installed on the 3.58m Telescopio Nazionale Galileo (TNG) in the Astronomical Observatory of Roque de Los Muchachos (Santa Cruz de La Palma, Spain), for a total exposure time of 1800 s.

Let's go outside: using photography to explore values and culture in mental health nursing.

PubMed

Aranda, K; de Goeas, S; Davies, S; Radcliffe, M; Christoforou, A

2015-06-01

Creative and imaginative approaches to mental healthcare education are known to help students explore emotions, empathy and others' experiences, as well as address ambivalence and ambiguity. Very few studies in mental health nursing education specifically utilise photography as a participatory pedagogic tool, with even fewer utilising photography to explore understandings of culture, values and diversity. Photography makes visible complex, collaborative forms of learning and previously unidentified, unarticulated ideas about culture and values. Photography as a critical pedagogic method helps develop critical, politicized understandings of culture and values. Increasing culturally diverse populations means complex and conflicting values have become a common feature in mental health nursing. In education the need to critically examine such topics necessitates creative and engaging pedagogy, and visual methods are readily acknowledged as such. Yet while many studies advocate and demonstrate the value of art-based methods in student learning, very few studies in mental health nursing specifically utilize photography as a participatory pedagogic tool, and fewer still use photography to explore understandings of culture, values and diversity. In this paper, we discuss a qualitative study where mental health nursing students used photography to create images in order to explore their own and often dominant culture and attendant values. Findings suggest that photography makes visible situated, relational and collaborative learning, and surfaces previously unidentified, unarticulated ideas about culture and values. These practices mimic important processes central to mental health nursing practice and contemporaneous understandings of diverse cultures. We argue that photography provides an important resource with which to unearth subjugated knowledge, promote critical understandings of culture and values, and thereby help address inequalities in mental health care. © 2015 John Wiley & Sons Ltd.

Glucose-6-phosphate isomerase is necessary for embryo implantation in the domestic ferret

PubMed Central

Schulz, Laura Clamon; Bahr, Janice M.

2003-01-01

The mechanism of implantation in carnivores is poorly understood. However, a previously unidentified 60-kDa protein has been shown to be necessary for embryo implantation in ferrets. Here we identify this protein as glucose-6-phosphate isomerase (GPI). GPI is expressed by the corpus luteum on days 6–9 of pregnancy, the time at which implantation-promoting activity has been found in corpora lutea. Passive immunization against GPI reduced the number of implantation sites in pregnant ferrets in a dose-dependent manner. GPI is a multifunctional protein. Although first identified for its role in glycolysis, GPI has since been implicated in neural growth, lymphocyte maturation, and metastasis. This study demonstrates a previously uncharacterized function of this protein that may represent the natural motility-stimulating activity that has been co-opted by tumor cells. PMID:12826606

The Fulton County Medical Examiner's experience with the Federal Bureau of Investigation National Missing Person DNA Database Program, 2004-2007.

PubMed

Heninger, Michael; Hanzlick, Randy

2011-03-01

Medical examiners and coroners occasionally encounter unidentified human bodies, which remain unidentified for extended periods. In such cases, when traditional methods of identification have failed or cannot be used, DNA profiling may be used. The Federal Bureau of Investigation has a National Missing Person DNA database (NMPDD) laboratory to which samples may be submitted on such cases and from possible relatives or environments of unidentified decedents. This article describes the experience of the Fulton County Medical Examiner (FCME) in submitting samples to the NMPDD laboratory. A database was established at the FCME to track the submission of samples from unidentified decedents to the NMPDD laboratory for DNA testing along with the results and turnaround times. In December 2004, the FCME inventoried all cases for which samples were available and began to submit them to the NMPDD laboratory for testing. DNA testing and isolation rates, sample type, and turnaround times were tabulated in October 2006 for samples submitted between December 16, 2004 and December 16, 2005. An overall summary of data was also prepared concerning the status of all samples submitted as of April 17, 2007. During the 1-year study period, samples from 77 unidentified decedents were submitted to the laboratory. As of October 2006 (22 months after submission of the first samples and 10 months after submission of the last samples), testing had been completed on 53% of the samples submitted, and 68% of those tested resulted in a mitochondrial DNA profile. Turnaround times ranged from 66 to 557 days, improved with time, and had a mean of 107 days for specimens submitted during the latter part of the study period. As of April 17, 2007, we had submitted samples involving 84 unidentified decedents. Seventy-five percent of the samples have now been tested. Data from the NMPDD laboratory have resulted in 4 identifications by comparison with putative relatives, 4 exclusions, and no cold hits through comparison NMPDD DNA profiles from missing persons. More extensive data are presented in the body of this article. The NMPDD laboratory provides useful and free services to medical examiners, coroners, and law enforcement agencies that require DNA services regarding missing and unidentified persons. Turnaround times have improved. The success of the system in getting cold hits will be heavily dependent on law enforcement filing missing persons reports and submission of reference samples from putative relatives of the decedent. We recommend collecting specimens for DNA analysis early on in the postmortem investigation, submitting samples to the NMPDD laboratory or one of its participating laboratories when traditional methods for identification cannot be used or have failed, not burying bodies until a DNA profile has been obtained, and not cremating unidentified remains.

SENSITIVITY OF BLIND PULSAR SEARCHES WITH THE FERMI LARGE AREA TELESCOPE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dormody, M.; Johnson, R. P.; Atwood, W. B.

2011-12-01

We quantitatively establish the sensitivity to the detection of young to middle-aged, isolated, gamma-ray pulsars through blind searches of Fermi Large Area Telescope (LAT) data using a Monte Carlo simulation. We detail a sensitivity study of the time-differencing blind search code used to discover gamma-ray pulsars in the first year of observations. We simulate 10,000 pulsars across a broad parameter space and distribute them across the sky. We replicate the analysis in the Fermi LAT First Source Catalog to localize the sources, and the blind search analysis to find the pulsars. We analyze the results and discuss the effect ofmore » positional error and spin frequency on gamma-ray pulsar detections. Finally, we construct a formula to determine the sensitivity of the blind search and present a sensitivity map assuming a standard set of pulsar parameters. The results of this study can be applied to population studies and are useful in characterizing unidentified LAT sources.« less

GMRT discovery of PSR J1544+4937: An eclipsing black-widow pulsar identified with a Fermi-LAT source

DOE PAGES

Bhattacharyya, B.; Roy, J.; Ray, P. S.; ...

2013-07-29

Using the Giant Metrewave Radio Telescope, we performed deep observations to search for radio pulsations in the directions of unidentified Fermi-Large Area Telescope γ-ray sources. We report the discovery of an eclipsing black-widow millisecond pulsar, PSR J1544+4937, identified with the uncataloged γ-ray source FERMI J1544.2+4941. This 2.16 ms pulsar is in a 2.9 hr compact circular orbit with a very low mass companion (Mc > 0.017M ⊙). At 322 MHz this pulsar is found to be eclipsing for 13% of its orbit, whereas at 607 MHz the pulsar is detected throughout the low-frequency eclipse phase. Variations in the eclipse ingressmore » phase are observed, indicating a clumpy and variable eclipsing medium. Moreover, additional short-duration absorption events are observed around the eclipse boundaries. Finally, using the radio timing ephemeris we were able to detect γ-ray pulsations from this pulsar, confirming it as the source powering the γ-ray emission.« less

The first γ-ray detection of the narrow-line Seyfert 1 FBQS J1644+2619

DOE PAGES

D'Ammando, F.; Orienti, M.; Larsson, J.; ...

2015-07-06

Here, we report the discovery of γ-ray emission from the narrow-line Seyfert 1 (NLSy1) galaxy FBQS J1644+2619 by the Large Area Telescope on board the Fermi satellite. The Third Fermi LAT Source catalogue reports an unidentified γ-ray source, detected over the first four years of Fermi operation, 0.°23 from the radio position of the NLSy1. Analysing 76 months of γ-ray data (2008 August 4–2014 December 31) we are able to better constrain the localization of the γ-ray source. The new position of the γ- ray source is 0.°05 from FBQS J1644+2619, suggesting a spatial association with the NLSy1. This ismore » the sixth NLSy1 detected at high significance by Fermi-LAT so far. Notably, a significant increase of activity was observed in γ-rays from FBQS J1644+2619 during 2012 July–October, and an increase of activity in V -band was detected by the Catalina Real-Time Sky Survey in the same period.« less

GMRT DISCOVERY OF PSR J1544+4937: AN ECLIPSING BLACK-WIDOW PULSAR IDENTIFIED WITH A FERMI-LAT SOURCE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bhattacharyya, B.; Roy, J.; Gupta, Y.

2013-08-10

Using the Giant Metrewave Radio Telescope, we performed deep observations to search for radio pulsations in the directions of unidentified Fermi-Large Area Telescope {gamma}-ray sources. We report the discovery of an eclipsing black-widow millisecond pulsar, PSR J1544+4937, identified with the uncataloged {gamma}-ray source FERMI J1544.2+4941. This 2.16 ms pulsar is in a 2.9 hr compact circular orbit with a very low mass companion (M{sub c} > 0.017M{sub Sun }). At 322 MHz this pulsar is found to be eclipsing for 13% of its orbit, whereas at 607 MHz the pulsar is detected throughout the low-frequency eclipse phase. Variations in themore » eclipse ingress phase are observed, indicating a clumpy and variable eclipsing medium. Moreover, additional short-duration absorption events are observed around the eclipse boundaries. Using the radio timing ephemeris we were able to detect {gamma}-ray pulsations from this pulsar, confirming it as the source powering the {gamma}-ray emission.« less

The first γ-ray detection of the narrow-line Seyfert 1 FBQS J1644+2619

NASA Astrophysics Data System (ADS)

D'Ammando, F.; Orienti, M.; Larsson, J.; Giroletti, M.

2015-09-01

We report the discovery of γ-ray emission from the narrow-line Seyfert 1 (NLSy1) galaxy FBQS J1644+2619 by the Large Area Telescope on board the Fermi satellite. The Third Fermi LAT Source catalogue reports an unidentified γ-ray source, detected over the first four years of Fermi operation, 0.23° from the radio position of the NLSy1. Analysing 76 months of γ-ray data (2008 August 4-2014 December 31) we are able to better constrain the localization of the γ-ray source. The new position of the γ-ray source is 0.05° from FBQS J1644+2619, suggesting a spatial association with the NLSy1. This is the sixth NLSy1 detected at high significance by Fermi-LAT so far. Notably, a significant increase of activity was observed in γ-rays from FBQS J1644+2619 during 2012 July-October, and an increase of activity in the V band was detected by the Catalina Real-Time Sky Survey in the same period.

Mapping 3D fault geometry in earthquakes using high-resolution topography: Examples from the 2010 El Mayor-Cucapah (Mexico) and 2013 Balochistan (Pakistan) earthquakes

NASA Astrophysics Data System (ADS)

Zhou, Yu; Walker, Richard T.; Elliott, John R.; Parsons, Barry

2016-04-01

Fault dips are usually measured from outcrops in the field or inferred through geodetic or seismological modeling. Here we apply the classic structural geology approach of calculating dip from a fault's 3-D surface trace using recent, high-resolution topography. A test study applied to the 2010 El Mayor-Cucapah earthquake shows very good agreement between our results and those previously determined from field measurements. To obtain a reliable estimate, a fault segment ≥120 m long with a topographic variation ≥15 m is suggested. We then applied this method to the 2013 Balochistan earthquake, getting dips similar to previous estimates. Our dip estimates show a switch from north to south dipping at the southern end of the main trace, which appears to be a response to local extension within a stepover. We suggest that this previously unidentified geometrical complexity may act as the endpoint of earthquake ruptures for the southern end of the Hoshab fault.

Initial characterization of unidentified Armillaria isolate from Serbia using LSU-IGS1 and TEF-1a genes

Treesearch

N. Keca; N. B. Klopfenstein; M.-S. Kim; H. Solheim; S. Woodward

2014-01-01

Armillaria species have a global distribution and play variable ecological roles, including causing root disease of diverse forest, ornamental and horticultural trees. Accurate identification of Armillaria species is critical to understand their distribution and ecological roles. This work focused on characterizing an unidentified Armillaria isolate from a Serbian...

COMPONENT-BASED AND WHOLE-MIXTURE ASSESSMENTS IN ADDRESSING THE UNIDENTIFIED FRACTION OF COMPLEX MIXTURES: DRINKING WATER AS AN EXAMPLE

EPA Science Inventory

Component-Based and Whole-Mixtures Assessments in Addressing the Unidentified Fraction of Complex Mixtures: Drinking Water as an Example

J. E. Simmons; L. K. Teuschler; C. Gennings; T. F. Speth; S. D. Richardson; R. J. Miltner; M. G. Narotsky; K. D. Schenck; G. Rice

12. UNIDENTIFIED CABLESTAYED SUSPENSION BRIDGE WITH TIMBER RAILING OF TWELVE ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

12. UNIDENTIFIED CABLE-STAYED SUSPENSION BRIDGE WITH TIMBER RAILING OF TWELVE PANELS, SHOWING CABLE PATTERN SIMILAR TO E.E. RUNYON'S SUSPENSION BRIDGE PATENTS. THE BLUFF DALE SUSPENSION BRIDGE'S CABLES MAY HAVE ORIGINALLY FOLLOWED THIS PATTERN. 3/4 VIEW FROM ABOVE. - Bluff Dale Suspension Bridge, Spanning Paluxy River at County Route 149, Bluff Dale, Erath County, TX

Scanning electron microscopy description of a new species of Demodex canis spp.

PubMed

Tamura, Y; Kawamura, Y; Inoue, I; Ishino, S

2001-10-01

Between 1997 and 1999, the prevalence of Demodex canis mites was determined in 150 dogs. In two dogs, we found two different species of mites; Demodex canis and another, unidentified, Demodex mite. The unidentified Demodex mite species had several different morphological features. First, it had a short opisthosoma and an obtuse end. In addition, the fourth coxisternal plate was rectangular and there was a band-like segmental plate between the fourth coxisternal plate and opisthosoma. Although all of the morphology and the development of male mites could not be investigated in this study, the location of the opisthosoma and the genital pore clearly differed from Demodex canis, suggesting that this unidentified mite is a new species.

The remarkable infrared galaxy Arp 220 = IC 4553

NASA Technical Reports Server (NTRS)

Soifer, B. T.; Neugebauer, G.; Helou, G.; Lonsdale, C. J.; Hacking, P.; Rice, W.; Houck, J. R.; Low, F. J.; Rowan-Robinson, M.

1984-01-01

IRAS observations of the peculiar galaxy Arp 220 = IC 4553 show that it is extremely luminous in the far-infrared, with a total luminosity of 2 x 10 to the 12th solar luminosities. The infrared-to-blue luminosity ratio of this galaxy is about 80, which is the largest value of the ratio for galaxies in the UGC catalog, and places it in the range of the 'unidentified' infrared sources recently reported by Houck et al. in the IRAS all-sky survey. Other observations of Arp 220, combined with the luminosity in the infrared, allow either a Seyfert-like or starburst origin for this luminosity.

Giant molecular clouds as regions of particle acceleration

NASA Technical Reports Server (NTRS)

Dogiel, V. A.; Gurevich, A. V.; Istomin, Y. N.; Zybin, K. A.

1985-01-01

One of the most interesting results of investigations carried out on the satellites SAS-II and COS-B is the discovery of unidentified discrete gamma sources. Possibly a considerable part of them may well be giant molecular clouds. Gamma emission from clouds is caused by the processes with participation of cosmic rays. The estimation of the cosmic ray density in clouds has shown that for the energy E approx. = I GeV their density can 10 to 1000 times exceed the one in intercloud space. We have made an attempt to determine the mechanism which could lead to the increase in the cosmic ray density in clouds.

Diagnosis of gastrointestinal bleeding: A practical guide for clinicians

PubMed Central

Kim, Bong Sik Matthew; Li, Bob T; Engel, Alexander; Samra, Jaswinder S; Clarke, Stephen; Norton, Ian D; Li, Angela E

2014-01-01

Gastrointestinal bleeding is a common problem encountered in the emergency department and in the primary care setting. Acute or overt gastrointestinal bleeding is visible in the form of hematemesis, melena or hematochezia. Chronic or occult gastrointestinal bleeding is not apparent to the patient and usually presents as positive fecal occult blood or iron deficiency anemia. Obscure gastrointestinal bleeding is recurrent bleeding when the source remains unidentified after upper endoscopy and colonoscopic evaluation and is usually from the small intestine. Accurate clinical diagnosis is crucial and guides definitive investigations and interventions. This review summarizes the overall diagnostic approach to gastrointestinal bleeding and provides a practical guide for clinicians. PMID:25400991

Thielavin B methyl ester: a cytotoxic benzoate trimer from an unidentified fungus (MSX 55526) from the Order Sordariales.

PubMed

Ayers, Sloan; Ehrmann, Brandie M; Adcock, Audrey F; Kroll, David J; Wani, Mansukh C; Pearce, Cedric J; Oberlies, Nicholas H

2011-11-02

As part of our ongoing investigation of filamentous fungi for anticancer leads, an active fungal extract was identified from the Mycosynthetix library (MSX 55526; from the Order Sordariales). Bioactivity-directed fractionation yielded the known ergosterol peroxide (2) and 5α,8α-epidioxyergosta-6,9(11),22-trien-3β-ol(3), and a new benzoate trimer, termed thielavin B methyl ester (1). The structure elucidation of 1 was facilitated by the use of HRMS coupled to an APPI (atmospheric pressure photoionization) source. Compound 1 proved to be moderately active against a panel of three cancer cell lines.

Recent Results on SNRs and PWNe from the Fermi Large Area Telescope

NASA Technical Reports Server (NTRS)

Hays, Elizabeth

2010-01-01

Topics include: Fermi LAT Collaboration groups; galactic results from LAT; a GeV, wide-field instrument; the 1FGL catalog, the Fermi LAT 1FGL source catalog, unidentified gamma-ray sources; variability in 1FGL sources; curvature in 1FGL sources; spectral-variability classification; pulsars and their wind nebulae; gamma-ray pulsars and MSPs; GeV PWN search; Crab pulsar and nebula; Vela X nebular of Vela pulsar; MSH 15-52; supernova remnants, resolved GeV sources, galactic transients, LAT unassociated transient detections; gamma rays from a nova; V407 Cyngi - a symbiotic nova; V407 Cygni: a variable star; and March 11 - a nova. Summary slides include pulsars everywhere, blazars, LAT as an electron detector, cosmic ray spectrum, the Large Area Telescope, the Fermi Observatory, LAT sensitivity with time, candidate gamma-ray events, on-orbit energy calibration and rate, a 1 year sky map, LAT automated science processing, reported GeV flares, early activity and spectacular flare, gamma-ray transients near the galactic plane , two early unassociated transients, counter part search - Fermi J0910-5404; counterpart search 3EG J0903-3531, and a new LAT transient - J1057-6027.

Management of natural resources through automatic cartographic inventory. [France

NASA Technical Reports Server (NTRS)

Rey, P.; Gourinard, Y.; Cambou, F. (Principal Investigator)

1974-01-01

The author has identified the following significant results. (1) Accurate recognition of previously known ground features from ERTS-1 imagery has been confirmed and a probable detection range for the major signatures can be given. (2) Unidentified elements, however, must be decoded by means of the equal densitometric value zone method. (3) Determination of these zonings involves an analogical treatment of images using the color equidensity methods (pseudo-color), color composites and especially temporal color composite (repetitive superposition). (4) After this analogical preparation, the digital equidensities can be processed by computer in the four MSS bands, according to a series of transfer operations from imagery and automatic cartography.

Identification of Point Mutations in Clinical Staphylococcus aureus Strains That Produce Small-Colony Variants Auxotrophic for Menadione

PubMed Central

Dean, Melissa A.; Olsen, Randall J.; Long, S. Wesley; Rosato, Adriana E.

2014-01-01

Staphylococcus aureus small-colony variants (SCVs) are implicated in chronic and relapsing infections that are difficult to diagnose and treat. Despite many years of study, the underlying molecular mechanisms and virulence effect of the small-colony phenotype remain incompletely understood. We sequenced the genomes of five S. aureus SCV strains recovered from human patients and discovered previously unidentified nonsynonymous point mutations in three genes encoding proteins in the menadione biosynthesis pathway. Analysis of genetic revertants and complementation with wild-type alleles confirmed that these mutations caused the SCV phenotype and decreased virulence for mice. PMID:24452687

Hydroacylation of 2-vinyl benzaldehyde systems: an efficient method for the synthesis of chiral 3-substituted indanones.

PubMed

Kundu, Kousik; McCullagh, James V; Morehead, Andrew T

2005-11-23

Asymmetric rhodium-catalyzed hydroacylation has been utilized in the synthesis of 3-substituted indanones with high conversions and enantioselectivity. The hydroacylation reaction of 2-vinyl benzaldehyde had been previously reported to give a low yield of indanone and an unidentified product. We have identified this compound as a dimer of the starting material. Substitution at the alpha-position of the 2-vinyl benzaldehyde substrates blocks the competitive dimerization reaction and allows the reaction to proceed with yields generally greater than 90%. Utilization of BINAP as a chiral ligand results in good chemical yields and enantioselectivity greater than 95% in most cases.

Cultural Differences in Donation Decision-Making.

PubMed

Wang, Yan; Tang, Yi-Yuan; Wang, Jinjun

2015-01-01

Decisions to help those in need are essential for human development and survival. Previous studies have demonstrated the "identified effect", in which one identifiable individual typically invokes stronger feelings of compassion and receives greater aid than statistical victim. However, this preference might be influenced by cultural differences. In the current study, Chinese respondents' ratings of distress and sympathy and their willingness to contribute are greater for a group of sick children than an individual. In the U.S., greater willingness to help and sympathy are elicited by an identified victim in comparison with an unidentified one. The different results may demonstrate the importance of cultural differences when trying to understand people's prosocial behavior.

Framing deadly domestic violence: why the media's spin matters in newspaper coverage of femicide.

PubMed

Gillespie, Lane Kirkland; Richards, Tara N; Givens, Eugena M; Smith, M Dwayne

2013-02-01

The news media play a substantial role in shaping society's perceptions of social issues, including domestic violence. However, minimal research has been conducted to examine whether news media frame stories of femicide within the context of domestic violence. Using frame analysis, the present research compares newspaper articles representing 113 cases of femicide that define the murder as domestic violence to a random sample of 113 cases without coverage defining the femicide as domestic violence. Findings indicate that both groups are represented by multiple frames, including a previously unidentified frame that places the femicide in the context of domestic violence as a social problem.

MX Siting Investigation. DTN/OBTS Field Surveys. Volume III. Biological Resources Nevada and Utah.

DTIC Science & Technology

1981-11-30

Black - throated sparrow (Amphispiza bilineata) X X X REPTILES Desert tortoise (Gopherus agassizi) X X Zebra-tailed...observed on the greatest number of sites was the black - throated sparrow (Amphispiza bilineata). The reptile most frequently observed was the side-blotched...Poliopt~ila caerula Loggerhead shrike Lanius ludovicianus Black - throated sparrow Amphispiza bilineata Unidentified sparrow Unidentified buteo REPTILES

Genomics dataset of unidentified disclosed isolates.

PubMed

Rekadwad, Bhagwan N

2016-09-01

Analysis of DNA sequences is necessary for higher hierarchical classification of the organisms. It gives clues about the characteristics of organisms and their taxonomic position. This dataset is chosen to find complexities in the unidentified DNA in the disclosed patents. A total of 17 unidentified DNA sequences were thoroughly analyzed. The quick response codes were generated. AT/GC content of the DNA sequences analysis was carried out. The QR is helpful for quick identification of isolates. AT/GC content is helpful for studying their stability at different temperatures. Additionally, a dataset on cleavage code and enzyme code studied under the restriction digestion study, which helpful for performing studies using short DNA sequences was reported. The dataset disclosed here is the new revelatory data for exploration of unique DNA sequences for evaluation, identification, comparison and analysis.

An unusual autopsy case of pyogenic liver abscess caused by periodontal bacteria.

PubMed

Ohyama, Hideki; Nakasho, Keiji; Yamanegi, Koji; Noiri, Yuichiro; Kuhara, Ayako; Kato-Kogoe, Nahoko; Yamada, Naoko; Hata, Masaki; Nishimura, Fusanori; Ebisu, Shigeyuki; Terada, Nobuyuki

2009-09-01

Pyogenic liver abscess (PLA) formation is thought to originate from the transmission of infection via three major routes including the biliary tract, portal vein and hepatic artery. However, about 50% of PLA cases are considered to be cryptogenic. Here we report an unusual autopsy case of PLA associated with periodontopathic bacterial infection. A 59-year-old female suddenly developed cardiopulmonary arrest and died. Despite macroscopic and microscopic examinations, the infectious routes and source of infection were unidentified, and the case appeared to be cryptogenic. Since this patient had suffered severe periodontitis for a long period of time, we investigated the involvement of periodontal infection in PLA formation by performing immunohistochemical analyses. We identified several periodontopathic bacterial species in the PLA of this patient, including Fusobacterium nucleatum, Treponema denticola, Prevotella intermedia and Porphyromonas gingivalis. Thus, we demonstrate here that periodontal infection is a potential source of infection in the formation of PLA.

ScanRanker: Quality Assessment of Tandem Mass Spectra via Sequence Tagging

PubMed Central

Ma, Ze-Qiang; Chambers, Matthew C.; Ham, Amy-Joan L.; Cheek, Kristin L.; Whitwell, Corbin W.; Aerni, Hans-Rudolf; Schilling, Birgit; Miller, Aaron W.; Caprioli, Richard M.; Tabb, David L.

2011-01-01

In shotgun proteomics, protein identification by tandem mass spectrometry relies on bioinformatics tools. Despite recent improvements in identification algorithms, a significant number of high quality spectra remain unidentified for various reasons. Here we present ScanRanker, an open-source tool that evaluates the quality of tandem mass spectra via sequence tagging with reliable performance in data from different instruments. The superior performance of ScanRanker enables it not only to find unassigned high quality spectra that evade identification through database search, but also to select spectra for de novo sequencing and cross-linking analysis. In addition, we demonstrate that the distribution of ScanRanker scores predicts the richness of identifiable spectra among multiple LC-MS/MS runs in an experiment, and ScanRanker scores assist the process of peptide assignment validation to increase confident spectrum identifications. The source code and executable versions of ScanRanker are available from http://fenchurch.mc.vanderbilt.edu. PMID:21520941

VizieR Online Data Catalog: A survey for Hα pulsar bow shocks (Brownsberger+, 2014)

NASA Astrophysics Data System (ADS)

Brownsberger, S.; Romani, R. W.

2017-06-01

Our pulsar Hα campaign was pursued during a series of WIYN and SOAR observations, allocated through the joint Fermi/NOAO program to study the counterparts of LAT pulsar, blazar, and unidentified sources. The PWN data reported here came from portions of five observing runs, covering both the Northern and Southern hemispheres. For all Hα images we used the WIYN W012 (λ=6566 Å, ΔλFWHM=16 Å) narrow band Hα filter, kindly loaned to SOAR for the two southern campaigns. To help distinguish poorly resolved Hα sources near the pulsars from stars, we also obtained, when possible, matching continuum observations using the W014 (λ=6562 Å, ΔλFWHM=378 Å) wide Hα filter or a Sloan Digital Sky Survey (SDSS) r'(λ=6163 Å, ΔλFWHM=1518 Å) broad band filter. (1 data file).

A complete X-ray sample of the high latitude sky from HEAO-1 A-2: log N lo S and luminosity functions

NASA Technical Reports Server (NTRS)

Piccinotti, G.; Mushotzky, R. F.; Boldt, E. A.; Holt, S. S.; Marshall, F. E.; Serlemitsos, P. J.; Shafer, R. A.

1981-01-01

An experiment was performed in which a complete X-ray survey of the 8.2 steradians of the sky at galactic latitudes where the absolute value of b is 20 deg down to a limiting sensitivity of 3.1 x ten to the minus 11th power ergs/sq cm sec in the 2-10 keV band. Of the 85 detected sources 17 were identified with galactic objects, 61 were identified with extragalactic objects, and 7 remain unidentified. The log N - log S relation for the non-galactic objects is well fit by the Euclidean relationship. The X-ray spectra of these objects were used to construct log N - log S in physical units. The complete sample of identified sources was used to construct X-ray luminosity functions, using the absolute maximum likelihood method, for clusters galaxies and active galactic nuclei.

Landscape Epidemiology of Tularemia Outbreaks in Sweden

PubMed Central

Svensson, Kerstin; Bäck, Erik; Eliasson, Henrik; Berglund, Lennart; Granberg, Malin; Karlsson, Linda; Larsson, Pär; Forsman, Mats

2009-01-01

Summer outbreaks of tularemia that occurred from 1995 through 2005 in 2 locations in Sweden affected 441 persons. We performed an epidemiologic investigation of these outbreaks using a novel strategy, involving high-resolution genotyping of Francisella tularensis isolates obtained from 136 patients (using 18 genetic markers developed from 6 F. tularensis genome sequences) and interviews with the patients. Strong spatial associations were found between F. tularensis subpopulations and the places of disease transmission; infection by some subpopulations occurred within areas as small as 2 km2, indicating unidentified environmental point sources of tularemia. In both locations, disease clusters were associated with recreational areas beside water, and genetic subpopulations were present throughout the tularemia season and persisted over years. High-resolution genotyping in combination with patients’ statements about geographic places of disease transmission provided valuable indications of likely sources of infection and the causal genotypes during these tularemia outbreaks. PMID:19961673

Presence of cysts on magnetic resonance images (MRIs) in children with asperger disorder and nonverbal learning disabilities.

PubMed

Semrud-Clikeman, Margaret; Fine, Jodene

2011-04-01

The main purpose of this study was to report the existence of previously unidentified brain cysts or lesions in children with nonverbal learning disabilities, Asperger syndrome, or controls. The authors compared the incidence of cysts or lesions on magnetic resonance images (MRIs) in 28 children with nonverbal learning disability, 26 children with Asperger syndrome, and 24 typical controls for abnormalities. In this study, the authors found 25% of children previously diagnosed with nonverbal learning disability to have unsuspected brain abnormalities generally including cysts or lesions in the occipital region, compared with approximately 4% in the Asperger syndrome or control group. The cysts/lesions were found mainly in the occipital lobe, an area responsible for visual/spatial reasoning. It is appropriate to speculate that there might be a connection between anomalous brain development and skill differences among these groups.

Spectral Identification of New Galactic cLBV and WR Stars

NASA Astrophysics Data System (ADS)

Stringfellow, G. S.; Gvaramadze, V. V.; Beletsky, Y.; Kniazev, A. Y.

2012-12-01

We have undertaken a near-IR spectral survey of stars associated with compact nebulae recently revealed by the Spitzer and WISE imaging surveys. These circumstellar nebulae, produced by massive evolved stars, display a variety of symmetries and shapes and are often only evident at mid-IR wavelengths. Stars associated with ˜50 of these nebulae have been observed. We also obtained recent spectra of previously confirmed (known) luminous blue variables (LBVs) and candidate LBVs (cLBVs). The spectral similarity of the stars observed when compared directly to known LBVs and Wolf-Rayet (WR) stars indicate many are newly identified cLBVs, with a few being newly discovered WR stars, mostly of WN8-9h spectral type. These results suggest that a large population of previously unidentified cLBVs and related transitional stars reside in the Galaxy and confirm that circumstellar nebulae are inherent to most (c)LBVs.

Disproportionation of (Mg,Fe)SiO 3 perovskite in Earth's deep lower mantle

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, L.; Meng, Y.; Yang, W.

2014-05-22

The mineralogical constitution of the Earth's mantle dictates the geophysical and geochemical properties of this region. Previous models of a perovskite-dominant lower mantle have been built on the assumption that the entire lower mantle down to the top of the D" layer contains ferromagnesian silicate [(Mg,Fe)SiO 3] with nominally 10 mole percent Fe. On the basis of experiments in laser-heated diamond anvil cells, at pressures of 95 to 101 gigapascals and temperatures of 2200 to 2400 kelvin, we found that such perovskite is unstable; it loses its Fe and disproportionates to a nearly Fe-free MgSiO 3 perovskite phase and anmore » Fe-rich phase with a hexagonal structure. This observation has implications for enigmatic seismic features beyond ~2000 kilometers depth and suggests that the lower mantle may contain previously unidentified major phases.« less

Disproportionation of (Mg,Fe)SiO3 perovskite in Earth's deep lower mantle

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, L.; Meng, Y.; Yang, W.

2014-05-22

The mineralogical constitution of the Earth’s mantle dictates the geophysical and geochemical properties of this region. Previous models of a perovskite-dominant lower mantle have been built on the assumption that the entire lower mantle down to the top of the D'' layer contains ferromagnesian silicate [(Mg,Fe)SiO3] with nominally 10 mole percent Fe. On the basis of experiments in laser-heated diamond anvil cells, at pressures of 95 to 101 gigapascals and temperatures of 2200 to 2400 kelvin, we found that such perovskite is unstable; it loses its Fe and disproportionates to a nearly Fe-free MgSiO3 perovskite phase and an Fe-rich phasemore » with a hexagonal structure. This observation has implications for enigmatic seismic features beyond ~2000 kilometers depth and suggests that the lower mantle may contain previously unidentified major phases.« less

An X-Ray Counterpart of HESS J1427-608 Discovered with Suzaku

NASA Astrophysics Data System (ADS)

Fujinaga, Takahisa; Mori, Koji; Bamba, Aya; Kimura, Shoichi; Dotani, Tadayasu; Ozaki, Masanobu; Matsuta, Keiko; Pülhofer, Gerd; Uchiyama, Hideki; Hiraga, Junko S.; Matsumoto, Hironori; Terada, Yukikatsu

2013-06-01

We report on the discovery of an X-ray counterpart of the unidentified very high-energy gamma-ray source HESS J1427-608. In the sky field coincident with HESS J1427-608, an extended source was found in the 2-8 keV band, and was designated as Suzaku J1427-6051. Its X-ray radial profile has an extension of σ = 0.'9 ± 0.'1 if approximated by a Gaussian. The spectrum was well fitted by an absorbed power-law with NH = (1.1 ± 0.3) × 1023 cm-2, Γ = 3.1+0.6-0.5, and the unabsorbed flux FX = (9+4-2) × 10-13 erg s-1 cm-2 in the 2-10 keV band. Using XMM-Newton archive data, we found seven point sources in the Suzaku source region. However, because their total flux and absorbing column densities are more than an order of magnitude lower than those of Suzaku J1427-6051, we consider that they are unrelated to the Suzaku source. Thus, Suzaku J1427-6051 is considered to be a truly diffuse source and an X-ray counterpart of HESS J1427-608. The possible nature of HESS J1427-608 is discussed based on the observational properties.

Cloning and Characterizing Genes Involved in Monoterpene Induced Mammary Tumor Regression

DTIC Science & Technology

1998-05-01

Monoterpene -induced/repressed genes were identified in regressing rat mammary carcinomas treated with dietary limonene using a newly developed method...termed subtractive display. The subtractive display screen identified 42 monoterpene -induced genes comprising 9 known genes and 33 unidentified genes...as well as 58 monoterpene -repressed genes comprising 1 known gene and 57 unidentified genes. Several of the identified differentially expressed

What are you or who are you? The emergence of social interaction between dog and an unidentified moving object (UMO).

PubMed

Gergely, Anna; Petró, Eszter; Topál, József; Miklósi, Ádám

2013-01-01

Robots offer new possibilities for investigating animal social behaviour. This method enhances controllability and reproducibility of experimental techniques, and it allows also the experimental separation of the effects of bodily appearance (embodiment) and behaviour. In the present study we examined dogs' interactive behaviour in a problem solving task (in which the dog has no access to the food) with three different social partners, two of which were robots and the third a human behaving in a robot-like manner. The Mechanical UMO (Unidentified Moving Object) and the Mechanical Human differed only in their embodiment, but showed similar behaviour toward the dog. In contrast, the Social UMO was interactive, showed contingent responsiveness and goal-directed behaviour and moved along varied routes. The dogs showed shorter looking and touching duration, but increased gaze alternation toward the Mechanical Human than to the Mechanical UMO. This suggests that dogs' interactive behaviour may have been affected by previous experience with typical humans. We found that dogs also looked longer and showed more gaze alternations between the food and the Social UMO compared to the Mechanical UMO. These results suggest that dogs form expectations about an unfamiliar moving object within a short period of time and they recognise some social aspects of UMOs' behaviour. This is the first evidence that interactive behaviour of a robot is important for evoking dogs' social responsiveness.

Development of unidentified dna-specific hif 1α gene of lizard (hemidactylus platyurus) which plays a role in tissue regeneration process

NASA Astrophysics Data System (ADS)

Novianti, T.; Sadikin, M.; Widia, S.; Juniantito, V.; Arida, E. A.

2018-03-01

Development of unidentified specific gene is essential to analyze the availability these genes in biological process. Identification unidentified specific DNA of HIF 1α genes is important to analyze their contribution in tissue regeneration process in lizard tail (Hemidactylus platyurus). Bioinformatics and PCR techniques are relatively an easier method to identify an unidentified gene. The most widely used method is BLAST (Basic Local Alignment Sequence Tools) method for alignment the sequences from the other organism. BLAST technique is online software from website https://blast.ncbi.nlm.nih.gov/Blast.cgi that capable to generate the similar sequences from closest kinship to distant kindship. Gecko japonicus is a species that it has closest kinship with H. platyurus. Comparing HIF 1 α gene sequence of G. japonicus with the other species used multiple alignment methods from Mega7 software. Conserved base areas were identified using Clustal IX method. Primary DNA of HIF 1 α gene was design by Primer3 software. HIF 1α gene of lizard (H. platyurus) was successfully amplified using a real-time PCR machine by primary DNA that we had designed from Gecko japonicus. Identification unidentified gene of HIF 1a lizard has been done successfully with multiple alignment method. The study was conducted by analyzing during the growth of tail on day 1, 3, 5, 7, 10, 13 and 17 of lizard tail after autotomy. Process amplification of HIF 1α gene was described by CT value in real time PCR machine. HIF 1α expression of gene is quantified by Livak formula. Chi-square statistic test is 0.000 which means that there is a different expression of HIF 1 α gene in every growth day treatment.

Known and Newly Identified Semi-Volatile Organic Compounds from Biomass Burning in Amazonia: Variability and Relationship to Aerosol Physical Properties

NASA Astrophysics Data System (ADS)

Wernis, R. A.; Yee, L.; Isaacman-VanWertz, G. A.; Kreisberg, N. M.; de Sá, S. S.; Liu, Y.; Martin, S. T.; Alexander, M. L. L.; Palm, B. B.; Hu, W.; Campuzano-Jost, P.; Day, D. A.; Jimenez, J. L.; Artaxo, P.; Viegas, J.; Manzi, A. O.; Souza, R. A. F. D.; Hering, S. V.; Goldstein, A. H.

2016-12-01

Aerosols are a source of great uncertainty in radiative forcing predictions and have poorly understood impacts on human health. In many environments, biomass burning contributes a significant source of primary aerosol as well as reactive gas-phase precursors that can form secondary organic aerosol (SOA). One class of these precursors, semi-volatile organic compounds (SVOCs), has been shown to have a large contribution to the amount of SOA formed from fire emissions. At present, SVOC emissions from biomass burning are poorly constrained and understanding their contributions to SOA formation is an important research challenge. In the Amazonian dry season, biomass burning is a major source of gases and aerosols reducing regional air quality. As part of the GoAmazon 2014/5 field campaign, we deployed the Semi-Volatile Thermal desorption Aerosol Gas Chromatograph (SV-TAG) instrument at the rural T3 site, 60 km to the west of Manaus, Brazil to measure hourly concentrations of SVOCs in the gas and particle phases. This comprehensive technique detects thousands of compounds, enabling the discovery of previously unidentified compounds. In this work we explore compounds for which a correlation with well-known biomass burning tracers is observed to discover the identities of new markers. We discuss contributions to the total organic aerosol from over 30 well-known, rarely reported and newly identified biomass burning markers. We examine the relationship between biomass burning aerosol composition and aerosol physical properties as measured at the T3 site. Additionally, we report gas-particle partitioning of all identified compounds with comparison to theoretical predictions. We find that the commonly used biomass burning tracer levoglucosan existed entirely in the particle phase and contributed 0.6% and 0.3% of total organic aerosol mass in the dry and wet seasons, respectively.

FERMI LARGE AREA TELESCOPE DETECTION OF PULSED gamma-RAYS FROM THE VELA-LIKE PULSARS PSR J1048-5832 AND PSR J2229+6114

DOE Office of Scientific and Technical Information (OSTI.GOV)

Abdo, A. A.; Ackermann, M.; Ajello, M.

2009-12-01

We report the detection of gamma-ray pulsations (>=0.1 GeV) from PSR J2229+6114 and PSR J1048-5832, the latter having been detected as a low-significance pulsar by EGRET. Data in the gamma-ray band were acquired by the Large Area Telescope (LAT) aboard the Fermi Gamma-ray Space Telescope, while the radio rotational ephemerides used to fold the gamma-ray light curves were obtained using the Green Bank Telescope, the Lovell telescope at Jodrell Bank, and the Parkes Telescope. The two young radio pulsars, located within the error circles of the previously unidentified EGRET sources 3EG J1048-5840 and 3EG J2227+6122, present spin-down characteristics similar tomore » the Vela pulsar. PSR J1048-5832 shows two sharp peaks at phases 0.15 +- 0.01 and 0.57 +- 0.01 relative to the radio pulse confirming the EGRET light curve, while PSR J2229+6114 presents a very broad peak at phase 0.49 +- 0.01. The gamma-ray spectra above 0.1 GeV of both pulsars are fit with power laws having exponential cutoffs near 3 GeV, leading to integral photon fluxes of (2.19 +- 0.22 +- 0.32) x 10{sup -7} cm{sup -2} s{sup -1} for PSR J1048-5832 and (3.77 +- 0.22 +- 0.44) x 10{sup -7} cm{sup -2} s{sup -1} for PSR J2229+6114. The first uncertainty is statistical and the second is systematic. PSR J1048-5832 is one of the two LAT sources which were entangled together as 3EG J1048-5840. These detections add to the growing number of young gamma-ray pulsars that make up the dominant population of GeV gamma-ray sources in the Galactic plane.« less

Managed Metapopulations: Do Salmon Hatchery ‘Sources’ Lead to In-River ‘Sinks’ in Conservation?

PubMed Central

Johnson, Rachel C.; Weber, Peter K.; Wikert, John D.; Workman, Michelle L.; MacFarlane, R. Bruce; Grove, Marty J.; Schmitt, Axel K.

2012-01-01

Maintaining viable populations of salmon in the wild is a primary goal for many conservation and recovery programs. The frequency and extent of connectivity among natal sources defines the demographic and genetic boundaries of a population. Yet, the role that immigration of hatchery-produced adults may play in altering population dynamics and fitness of natural populations remains largely unquantified. Quantifying, whether natural populations are self-sustaining, functions as sources (population growth rate in the absence of dispersal, λ>1), or as sinks (λ<1) can be obscured by an inability to identify immigrants. In this study we use a new isotopic approach to demonstrate that a natural spawning population of Chinook salmon, (Oncorhynchus tshawytscha) considered relatively healthy, represents a sink population when the contribution of hatchery immigrants is taken into consideration. We retrieved sulfur isotopes (34S/32S, referred to as δ34S) in adult Chinook salmon otoliths (ear bones) that were deposited during their early life history as juveniles to determine whether individuals were produced in hatcheries or naturally in rivers. Our results show that only 10.3% (CI = 5.5 to 18.1%) of adults spawning in the river had otolith δ34S values less than 8.5‰, which is characteristic of naturally produced salmon. When considering the total return to the watershed (total fish in river and hatchery), we estimate that 90.7 to 99.3% (CI) of returning adults were produced in a hatchery (best estimate = 95.9%). When population growth rate of the natural population was modeled to account for the contribution of previously unidentified hatchery immigrants, we found that hatchery-produced fish caused the false appearance of positive population growth. These findings highlight the potential dangers in ignoring source-sink dynamics in recovering natural populations, and question the extent to which declines in natural salmon populations are undetected by monitoring programs. PMID:22347362

Managed Metapopulations: Do Salmon Hatchery ‘Sources’ Lead to In-River ‘Sinks’ in Conservation?

DOE PAGES

Johnson, Rachel C.; Weber, Peter K.; Wikert, John D.; ...

2012-02-08

Maintaining viable populations of salmon in the wild is a primary goal for many conservation and recovery programs. The frequency and extent of connectivity among natal sources defines the demographic and genetic boundaries of a population. Yet, the role that immigration of hatchery-produced adults may play in altering population dynamics and fitness of natural populations remains largely unquantified. Quantifying, whether natural populations are self-sustaining, functions as sources (population growth rate in the absence of dispersal, λ>1), or as sinks (λ<1) can be obscured by an inability to identify immigrants. In this study we use a new isotopic approach to demonstratemore » that a natural spawning population of Chinook salmon, (Oncorhynchus tshawytscha) considered relatively healthy, represents a sink population when the contribution of hatchery immigrants is taken into consideration. We retrieved sulfur isotopes ( 34S/ 32S, referred to as δ 34S) in adult Chinook salmon otoliths (ear bones) that were deposited during their early life history as juveniles to determine whether individuals were produced in hatcheries or naturally in rivers. Our results show that only 10.3% (CI=5.5 to 18.1%) of adults spawning in the river had otolith δ 34S values less than 8.5‰, which is characteristic of naturally produced salmon. When considering the total return to the watershed (total fish in river and hatchery), we estimate that 90.7 to 99.3% (CI) of returning adults were produced in a hatchery (best estimate=95.9%). When population growth rate of the natural population was modeled to account for the contribution of previously unidentified hatchery immigrants, we found that hatchery-produced fish caused the false appearance of positive population growth. In conclusion, these findings highlight the potential dangers in ignoring source-sink dynamics in recovering natural populations, and question the extent to which declines in natural salmon populations are undetected by monitoring programs.« less

Spectrum and Morphology of the Two Brightest Milagro Sources in the Cygnus Region: MGRO J2019+37 and MGRO J2031+41

NASA Astrophysics Data System (ADS)

Abdo, A. A.; Abeysekara, U.; Allen, B. T.; Aune, T.; Berley, D.; Bonamente, E.; Christopher, G. E.; DeYoung, T.; Dingus, B. L.; Ellsworth, R. W.; Galbraith-Frew, J. G.; Gonzalez, M. M.; Goodman, J. A.; Hoffman, C. M.; Hüntemeyer, P. H.; Hui, C. M.; Kolterman, B. E.; Linnemann, J. T.; McEnery, J. E.; Mincer, A. I.; Morgan, T.; Nemethy, P.; Pretz, J.; Ryan, J. M.; Saz Parkinson, P. M.; Shoup, A.; Sinnis, G.; Smith, A. J.; Vasileiou, V.; Walker, G. P.; Williams, D. A.; Yodh, G. B.

2012-07-01

The Cygnus region is a very bright and complex portion of the TeV sky, host to unidentified sources and a diffuse excess with respect to conventional cosmic-ray propagation models. Two of the brightest TeV sources, MGRO J2019+37 and MGRO J2031+41, are analyzed using Milagro data with a new technique, and their emission is tested under two different spectral assumptions: a power law and a power law with an exponential cutoff. The new analysis technique is based on an energy estimator that uses the fraction of photomultiplier tubes in the observatory that detect the extensive air shower. The photon spectrum is measured in the range 1-100 TeV using the last three years of Milagro data (2005-2008), with the detector in its final configuration. An F-test indicates that MGRO J2019+37 is better fit by a power law with an exponential cutoff than by a simple power law. The best-fitting parameters for the power law with exponential cutoff model are a normalization at 10 TeV of 7+5 -2 × 10-10 s-1 m-2 TeV-1, a spectral index of 2.0+0.5 -1.0, and a cutoff energy of 29+50 -16 TeV. MGRO J2031+41 shows no evidence of a cutoff. The best-fitting parameters for a power law are a normalization of 2.1+0.6 -0.6 × 10-10 s-1 m-2 TeV-1 and a spectral index of 3.22+0.23 -0.18. The overall flux is subject to a ~30% systematic uncertainty. The systematic uncertainty on the power-law indices is ~0.1. Both uncertainties have been verified with cosmic-ray data. A comparison with previous results from TeV J2032+4130, MGRO J2031+41, and MGRO J2019+37 is also presented.

GLAST: Exploring Nature's Highest Energy Processes with the Gamma-ray Large Area Space Telescope

NASA Technical Reports Server (NTRS)

Digel, Seth; Myers, J. D.; White, Nicholas E. (Technical Monitor)

2001-01-01

The Gamma-ray Large Area Space Telescope (GLAST) is an international and multi-agency space mission that will study the cosmos in the energy range 10 keV-300 GeV. Several successful exploratory missions in gamma-ray astronomy led to the Energetic Gamma Ray Experiment Telescope (EGRET) instrument on the Compton Gamma Ray Observatory (CGRO). Launched in 1991, EGRET made the first complete survey of the sky in the 30 MeV-10 GeV range. EGRET showed the high-energy gamma-ray sky to be surprisingly dynamic and diverse, with sources ranging from the sun and moon to massive black holes at large redshifts. Most of the gamma-ray sources detected by EGRET remain unidentified. In light of the discoveries with EGRET, the great potential of the next generation gamma-ray telescope can be appreciated. GLAST will have an imaging gamma-ray telescope vastly more capable than instruments flown previously, as well as a secondary instrument to augment the study of gamma-ray bursts. The main instrument, the Large Area Telescope (LAT), will have superior area, angular resolution, field of view, and deadtime that together will provide a factor of 30 or more advance in sensitivity, as well as provide capability for study of transient phenomena. The GLAST Burst Monitor (GBM) will have a field of view several times larger than the LAT and will provide spectral coverage of gamma-ray bursts that extends from the lower limit of the LAT down to 10 keV. The basic parameters of the GBM are compared to those of the Burst and Transient Source Experiment (BATSE) instrument on CGRO in Table 1-2. With the LAT and GBM, GLAST will be a flexible observatory for investigating the great range of astrophysical phenomena best studied in high-energy gamma rays. NASA plans to launch GLAST in late 2005.

Fermi LAT Detection of Pulsed Gamma-Rays From the Vela-Like Pulsars PSR J1048-5832 and PSR J2229+6114

DOE Office of Scientific and Technical Information (OSTI.GOV)

Abdo, A.A.; /Naval Research Lab, Wash., D.C. /Federal City Coll.; Ackermann, M.

We report the detection of {gamma}-ray pulsations ({ge}0.1 GeV) from PSR J2229+6114 and PSR J1048-5832, the latter having been detected as a low-significance pulsar by EGRET. Data in the {gamma}-ray band were acquired by the Large Area Telescope (LAT) aboard the Fermi Gamma-ray Space Telescope, while the radio rotational ephemerides used to fold the {gamma}-ray light curves were obtained using the Green Bank Telescope, the Lovell telescope at Jodrell Bank, and the Parkes Telescope. The two young radio pulsars, located within the error circles of the previously unidentified EGRET sources 3EG J1048-5840 and 3EG J2227+6122, present spin-down characteristics similar tomore » the Vela pulsar. PSR J1048-5832 shows two sharp peaks at phases 0.15 {+-} 0.01 and 0.57 {+-} 0.01 relative to the radio pulse confirming the EGRET light curve, while PSR J2229+6114 presents a very broad peak at phase 0.49 {+-} 0.01. The {gamma}-ray spectra above 0.1 GeV of both pulsars are fit with power laws having exponential cutoffs near 3 GeV, leading to integral photon fluxes of (2.19 {+-} 0.22 {+-} 0.32) x 10{sup -7} cm{sup -2} s{sup -1} for PSR J1048-5832 and (3.77 {+-} 0.22 {+-} 0.44) x 10{sup -7} cm{sup -2} s{sup -1} for PSR J2229+6114. The first uncertainty is statistical and the second is systematic. PSR J1048-5832 is one of the two LAT sources which were entangled together as 3EG J1048-5840. These detections add to the growing number of young {gamma}-ray pulsars that make up the dominant population of GeV {gamma}-ray sources in the Galactic plane.« less

Nitrous acid formation in a snow-free wintertime polluted rural area

NASA Astrophysics Data System (ADS)

Tsai, Catalina; Spolaor, Max; Fedele Colosimo, Santo; Pikelnaya, Olga; Cheung, Ross; Williams, Eric; Gilman, Jessica B.; Lerner, Brian M.; Zamora, Robert J.; Warneke, Carsten; Roberts, James M.; Ahmadov, Ravan; de Gouw, Joost; Bates, Timothy; Quinn, Patricia K.; Stutz, Jochen

2018-02-01

Nitrous acid (HONO) photolysis is an important source of hydroxyl radicals (OH) in the lower atmosphere, in particular in winter when other OH sources are less efficient. The nighttime formation of HONO and its photolysis in the early morning have long been recognized as an important contributor to the OH budget in polluted environments. Over the past few decades it has become clear that the formation of HONO during the day is an even larger contributor to the OH budget and additionally provides a pathway to recycle NOx. Despite the recognition of this unidentified HONO daytime source, the precise chemical mechanism remains elusive. A number of mechanisms have been proposed, including gas-phase, aerosol, and ground surface processes, to explain the elevated levels of daytime HONO. To identify the likely HONO formation mechanisms in a wintertime polluted rural environment we present LP-DOAS observations of HONO, NO2, and O3 on three absorption paths that cover altitude intervals from 2 to 31, 45, and 68 m above ground level (a.g.l.) during the UBWOS 2012 experiment in the Uintah Basin, Utah, USA. Daytime HONO mixing ratios in the 2-31 m height interval were, on average, 78 ppt, which is lower than HONO levels measured in most polluted urban environments with similar NO2 mixing ratios of 1-2 ppb. HONO surface fluxes at 19 m a.g.l., calculated using the HONO gradients from the LP-DOAS and measured eddy diffusivity coefficient, show clear upward fluxes. The hourly average vertical HONO flux during sunny days followed solar irradiance, with a maximum of (4.9 ± 0.2) × 1010 molec. cm-2 s-1 at noontime. A photostationary state analysis of the HONO budget shows that the surface flux closes the HONO budget, accounting for 63 ± 32 % of the unidentified HONO daytime source throughout the day and 90 ± 30 % near noontime. This is also supported by 1-D chemistry and transport model calculations that include the measured surface flux, thus clearly identifying chemistry at the ground as the missing daytime HONO source in this environment. Comparison between HONO surface flux, solar radiation, NO2 and HNO3 mixing ratios, and results from 1-D model runs suggest that, under high NOx conditions, HONO formation mechanisms related to solar radiation and NO2 mixing ratios, such as photo-enhanced conversion of NO2 on the ground, are most likely the source of daytime HONO. Under moderate to low NO2 conditions, photolysis of HNO3 on the ground seems to be the main source of HONO.

NIR SPECTROSCOPIC OBSERVATION OF MASSIVE GALAXIES IN THE PROTOCLUSTER AT z = 3.09

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kubo, Mariko; Yamada, Toru; Ichikawa, Takashi

2015-01-20

We present the results of near-infrared spectroscopic observations of the K-band-selected candidate galaxies in the protocluster at z = 3.09 in the SSA22 field. We observed 67 candidates with K {sub AB} < 24 and confirmed redshifts of the 39 galaxies at 2.0 < z {sub spec} < 3.4. Of the 67 candidates, 24 are certainly protocluster members with 3.04 ≤ z {sub spec} ≤ 3.12, which are massive red galaxies that have been unidentified in previous optical observations of the SSA22 protocluster. Many distant red galaxies (J – K {sub AB} > 1.4), hyper extremely red objects (J –more » K {sub AB} > 2.1), Spitzer MIPS 24 μm sources, active galactic nuclei (AGNs) as well as the counterparts of Lyα blobs and the AzTEC/ASTE 1.1 mm sources in the SSA22 field are also found to be protocluster members. The mass of the SSA22 protocluster is estimated to be ∼2-5 × 10{sup 14} M {sub ☉}, and this system is plausibly a progenitor of the most massive clusters of galaxies in the current universe. The reddest (J – K {sub AB} ≥ 2.4) protocluster galaxies are massive galaxies with M {sub star} ∼ 10{sup 11} M {sub ☉} showing quiescent star formation activities and plausibly dominated by old stellar populations. Most of these massive quiescent galaxies host moderately luminous AGNs detected by X-ray. There are no significant differences in the [O III] λ5007/Hβ emission line ratios and [O III] λ5007 line widths and spatial extents of the protocluster galaxies from those of massive galaxies at z ∼ 2-3 in the general field.« less

Transitional basal cells at the squamous-columnar junction generate Barrett’s oesophagus

PubMed Central

Jiang, Ming; Li, Haiyan; Zhang, Yongchun; Yang, Ying; Lu, Rong; Liu, Kuancan; Lin, Sijie; Lan, Xiaopeng; Wang, Haikun; Wu, Han; Zhu, Jian; Zhou, Zhongren; Xu, Jianming; Lee, Dong-Kee; Zhang, Lanjing; Lee, Yuan-Cho; Yuan, Jingsong; Abrams, Julian A.; Wang, Timothy G.; Sepulveda, Antonia R.; Wu, Qi; Chen, Huaiyong; Sun, Xin; She, Junjun; Chen, Xiaoxin; Que, Jianwen

2017-01-01

In several organ systems the transitional zone between different types of epithelia is a hotspot for pre-neoplastic metaplasia and malignancy1–3. However, the cell-of-origin for the metaplastic epithelium and subsequent malignancy, remains obscure1–3. In the case of Barrett’s oesophagus (BE), intestinal metaplasia occurs at the gastro-oesophageal junction, where stratified squamous epithelium transitions into simple columnar cells4. Based on different experimental models, several alternative cell types have been proposed as the source of the metaplasia, but in all cases the evidence is inconclusive and no model completely mimics BE with the presence of intestinal goblet cells5–8. Here, we describe a novel transitional columnar epithelium with distinct basal progenitor cells (p63+ KRT5+ KRT7+) in the squamous-columnar junction (SCJ) in the upper gastrointestinal tract of the mouse. We use multiple models and lineage tracing strategies to show that this unique SCJ basal cell population serves as a source of progenitors for the transitional epithelium. Moreover, upon ectopic expression of CDX2 these transitional basal progenitors differentiate into intestinal-like epithelium including goblet cells, thus reproducing Barrett’s metaplasia. A similar transitional columnar epithelium is present at the transitional zones of other mouse tissues, including the anorectal junction, and, importantly, at the gastro-oesophageal junction in the human gut. Acid reflux-induced oesophagitis and the multilayered epithelium (MLE) believed to be a precursor of BE are both characterized by the expansion of the transitional basal progenitor cells. Taken together our findings reveal the presence of a previously unidentified transitional zone in the epithelium of the upper gastrointestinal tract and provide evidence that the p63+ KRT7+ basal cells in this zone are the cell-of-origin for MLE and BE. PMID:29019984

Transitional basal cells at the squamous-columnar junction generate Barrett's oesophagus.

PubMed

Jiang, Ming; Li, Haiyan; Zhang, Yongchun; Yang, Ying; Lu, Rong; Liu, Kuancan; Lin, Sijie; Lan, Xiaopeng; Wang, Haikun; Wu, Han; Zhu, Jian; Zhou, Zhongren; Xu, Jianming; Lee, Dong-Kee; Zhang, Lanjing; Lee, Yuan-Cho; Yuan, Jingsong; Abrams, Julian A; Wang, Timothy C; Sepulveda, Antonia R; Wu, Qi; Chen, Huaiyong; Sun, Xin; She, Junjun; Chen, Xiaoxin; Que, Jianwen

2017-10-26

In several organ systems, the transitional zone between different types of epithelium is a hotspot for pre-neoplastic metaplasia and malignancy, but the cells of origin for these metaplastic epithelia and subsequent malignancies remain unknown. In the case of Barrett's oesophagus, intestinal metaplasia occurs at the gastro-oesophageal junction, where stratified squamous epithelium transitions into simple columnar cells. On the basis of a number of experimental models, several alternative cell types have been proposed as the source of this metaplasia but in all cases the evidence is inconclusive: no model completely mimics Barrett's oesophagus in terms of the presence of intestinal goblet cells. Here we describe a transitional columnar epithelium with distinct basal progenitor cells (p63 + KRT5 + KRT7 + ) at the squamous-columnar junction of the upper gastrointestinal tract in a mouse model. We use multiple models and lineage tracing strategies to show that this squamous-columnar junction basal cell population serves as a source of progenitors for the transitional epithelium. On ectopic expression of CDX2, these transitional basal progenitors differentiate into intestinal-like epithelium (including goblet cells) and thereby reproduce Barrett's metaplasia. A similar transitional columnar epithelium is present at the transitional zones of other mouse tissues (including the anorectal junction) as well as in the gastro-oesophageal junction in the human gut. Acid reflux-induced oesophagitis and the multilayered epithelium (believed to be a precursor of Barrett's oesophagus) are both characterized by the expansion of the transitional basal progenitor cells. Our findings reveal a previously unidentified transitional zone in the epithelium of the upper gastrointestinal tract and provide evidence that the p63 + KRT5 + KRT7 + basal cells in this zone are the cells of origin for multi-layered epithelium and Barrett's oesophagus.

X-ray photoelectron spectroscopic and morphologic studies of Ru nanoparticles deposited onto highly oriented pyrolytic graphite

NASA Astrophysics Data System (ADS)

Bavand, R.; Yelon, A.; Sacher, E.

2015-11-01

Ruthenium nanoparticles (Ru NPs) function as effective catalysts in specific reactions, such as methanation and Fischer-Tropsch syntheses. It is our purpose to physicochemically characterize their surfaces, at which catalysis occurs, by surface-sensitive X-ray photoelectron spectroscopy (XPS), using the symmetric peak component anaylsis technique developed in our laboratory to reveal previously hidden components. Ru NPs were deposited by evaporation (0.25-1.5 nm nominal deposition range) onto highly oriented pyrolytic graphite (HOPG). In addition to their surfaces being characterized by XPS, an indication of morphology was obtained from transmission electron microscopy (TEM). Our use of symmetric peak component XPS analysis has revealed detailed information on a previously unidentified surface oxide initially formed, as well as on the valence electronic structure and its variation with NP size, information that is of potential importance in the use of these NPs in catalysis. Each of the several Ru core XPS spectra characterized (3d, 3p and 3s) was found to be composed of three symmetric components. Together with two metal oxide O1s components, these give evidence of a rather complex, previously unidentified oxide that is initially formed. The Ru valence band (4d and 5s) spectra clearly demonstrate a loss of metallicity, a simultaneous increase of the Kubo gap, and an abrupt transfer in valence electron density from the 4d to the 5s orbitals (known as electron spill-over), as the NP size decreases below 0.5 nm. TEM photomicrographs, as a function of deposition rate, show that, at a rate that gives insufficient time for the NP condensation energy to dissipate, the initially well-separated NPs are capable of diffusing laterally and aggregating. This indicates weak NP bonding to the HOPG substrate. Carbide is formed, at both high and low deposition rates, at Ru deposition thicknesses greater than 0.25 nm, its formation explained by Ru NPs reacting with residual hydrocarbon vapor, under the influence of the heat of condensation released on Ru deposition, and not by Ru reacting with the HOPG substrate.

77 FR 32986 - Notice of Inventory Completion: The University of Alabama Museums, Tuscaloosa, AL

Federal Register 2010, 2011, 2012, 2013, 2014

2012-06-04

... than 2,032 glass beads, 1 lot of more than 17 shell beads, 1 unidentified bead, 1 gun lock, 1 gun butt plate, 1 gun stock, 2 gun barrels, 1 brass ramrod support, 8 musket balls, 2 iron buckles, 1 iron handle... fragments, 1 unidentified bead, 2 glass beads, 1 gun flint, 1 iron knife blade, 1 iron nail, 1 musket ball...

Bat Virus Downunder: The Hendra Virus and Its Relationship to Native Fruit Bats, Horses and Human --Learning and Teaching Opportunities for Classroom Practice

ERIC Educational Resources Information Center

van Rooy, Wilhelmina

2013-01-01

The fatal effect of the Hendra virus was noticed first in Queensland, Australia in 1994 when several horses died from an "unidentified cause". This was followed by the death of trainers and veterinarians called to assist affected horses. It is now known that the "unidentified cause", is a virus harboured in native Australian…

Supplemental Archeological Investigations of Lower Bayou Teche, St. Mary Parish, Louisiana

DTIC Science & Technology

1991-08-01

Ruler end (brass)1 ____ Buckle 1__________ Brass and inlaid shell button 1____ Chain 2 71 Cosmetic cap - gild brass inlaid with shell 1I____ 185...Molded stemnware fragment ____ _____ _____ Unidentified ______ ______1 Perfume/ Cosmetic Bottle Fragment Milk glass 2 Melted Glass Aqua1 Unidentified...major portion of the recovery (n = 122). Other metal artifacts included 2 safety pins, 1 cosmetic cap made of gilt brass inlaid with shell, 3 buttons

Deinococcus multiflagellatus sp. nov., isolated from a car air-conditioning system.

PubMed

Kim, Dong-Uk; Lee, Hyosun; Lee, Suyeon; Park, Sooyeon; Yoon, Jung-Hoon; Zhao, Lei; Kim, Min-Kyu; Ahn, Jae-Hyung; Ka, Jong-Ok

2018-04-01

A gamma radiation-resistant and pink-to-red pigmented bacterial strain, designated ID1504 T , was isolated from a car air-conditioning system sampled in Korea. The cells were observed to be Gram-stain negative, aerobic, motile with peritrichous flagella and short rod-shaped. Phylogenetically, the strain groups with the members of the genus Deinococcus and exhibits high 16S rRNA gene sequence similarities with Deinococcus arenae SA1 T (94.0%), Deinococcus actinosclerus BM2 T (93.9%) and Deinococcus soli N5 T (93.5%). The predominant fatty acids were identified as C 17:0 , C 16:0 , summed feature 3 (C 16:1 ω7c and/or C 16:1 ω6c) and iso-C 17:0 . The major respiratory quinone was identified as MK-8. The polar lipids were found to be comprised of unidentified phospholipids, unidentified glycolipids, an unidentified aminophospholipid and an unidentified lipid. The DNA G+C content of the strain was determined to be 68.3 mol%. On the basis of the phenotypic, genotypic and chemotaxonomic characteristics, strain ID1504 T should be classified in a novel species in the genus Deinococcus, for which the name Deinococcus multiflagellatus sp. nov. (= KACC 19287 T  = NBRC 112888 T ) is proposed.

Identification of the geographical place of origin of an unidentified individual by multi-isotope analysis.

PubMed

Font, Laura; van der Peijl, Gerard; van Leuwen, Carina; van Wetten, Isis; Davies, Gareth R

2015-01-01

A multi-isotope investigation (Sr and Pb isotopes and δ18O, δ13C and δ15N) was applied to bone and teeth from an unidentified male found drowned in the"IJ" Ruyterkade in Amsterdam, The Netherlands in March of 1999. The individual remained unidentified until mid 2013, after the isotope study was completed. Coupled δ13C and δ15N values in bone collagen recovered from rib and femur are consistent with an omnivore living in a region where C3-type diet dominates (i.e. Europe). Integrated Sr and Pb isotopes and δ18O values in canine and third molar teeth and femur and rib bone data exclude extended residence in north-west Europe and particularly The Netherlands. Characteristic Pb isotope ratios coupled with inferred δ18O values of drinking water argue for a most probable place of origin for the unidentified individual in west and south Poland, south-east Slovakia and the region of Ukraine-Romania-Bulgaria, specifically the region associated with the Carpathian Mountains. Independent of the isotope study, the Cold Case Team made a positive identification with an individual from south-west Poland, validating the results of the multiple-isotopic approach. Copyright © 2014 Forensic Science Society. Published by Elsevier Ireland Ltd. All rights reserved.

Evidence for a cysteine-mediated mechanism of excitation energy regulation in a photosynthetic antenna complex

PubMed Central

Orf, Gregory S.; Saer, Rafael G.; Niedzwiedzki, Dariusz M.; Zhang, Hao; McIntosh, Chelsea L.; Schultz, Jason W.; Mirica, Liviu M.; Blankenship, Robert E.

2016-01-01

Light-harvesting antenna complexes not only aid in the capture of solar energy for photosynthesis, but regulate the quantity of transferred energy as well. Light-harvesting regulation is important for protecting reaction center complexes from overexcitation, generation of reactive oxygen species, and metabolic overload. Usually, this regulation is controlled by the association of light-harvesting antennas with accessory quenchers such as carotenoids. One antenna complex, the Fenna–Matthews–Olson (FMO) antenna protein from green sulfur bacteria, completely lacks carotenoids and other known accessory quenchers. Nonetheless, the FMO protein is able to quench energy transfer in aerobic conditions effectively, indicating a previously unidentified type of regulatory mechanism. Through de novo sequencing MS, chemical modification, and mutagenesis, we have pinpointed the source of the quenching action to cysteine residues (Cys49 and Cys353) situated near two low-energy bacteriochlorophylls in the FMO protein from Chlorobaculum tepidum. Removal of these cysteines (particularly removal of the completely conserved Cys353) through N-ethylmaleimide modification or mutagenesis to alanine abolishes the aerobic quenching effect. Electrochemical analysis and electron paramagnetic resonance spectra suggest that in aerobic conditions the cysteine thiols are converted to thiyl radicals which then are capable of quenching bacteriochlorophyll excited states through electron transfer photochemistry. This simple mechanism has implications for the design of bio-inspired light-harvesting antennas and the redesign of natural photosynthetic systems. PMID:27335466

Efficient aquatic bacterial metabolism of dissolved low-molecular-weight compounds from terrestrial sources.

PubMed

Berggren, Martin; Laudon, Hjalmar; Haei, Mahsa; Ström, Lena; Jansson, Mats

2010-03-01

Carboxylic acids (CAs), amino acids (AAs) and carbohydrates (CHs) in dissolved free forms can be readily assimilated by aquatic bacteria and metabolized at high growth efficiencies. Previous studies have shown that these low-molecular-weight (LMW) substrates are released by phytoplankton but also that unidentified LMW compounds of terrestrial origin is a subsidy for bacterial metabolism in unproductive freshwater systems. We tested the hypothesis that different terrestrially derived CA, AA and CH compounds can offer substantial support for aquatic bacterial metabolism in fresh waters that are dominated by allochthonous dissolved organic matter (DOM). Drainage water from three catchments of different characters in the Krycklan experimental area in Northern Sweden were studied at the rising and falling limb of the spring flood, using a 2-week bioassay approach. A variety of CA, AA and CH compounds were significantly assimilated by bacteria, meeting 15-100% of the bacterial carbon demand and explaining most of the observed variation in bacterial growth efficiency (BGE; R(2)=0.66). Of the 29 chemical species that was detected, acetate was the most important, representing 45% of the total bacterial consumption of all LMW compounds. We suggest that LMW organic compounds in boreal spring flood drainage could potentially support all in situ bacterial production in receiving lake waters during periods of weeks to months after the spring flood.

Dark matter subhalos and unidentified sources in the Fermi 3FGL source catalog

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schoonenberg, Djoeke; Gaskins, Jennifer; Bertone, Gianfranco

2016-05-01

If dark matter consists of weakly interacting massive particles (WIMPs), dark matter subhalos in the Milky Way could be detectable as gamma-ray point sources due to WIMP annihilation. In this work, we perform an updated study of the detectability of dark matter subhalos as gamma-ray sources with the Fermi Large Area Telescope (Fermi LAT). We use the results of the Via Lactea II simulation, scaled to the Planck 2015 cosmological parameters, to predict the local dark matter subhalo distribution. Under optimistic assumptions for the WIMP parameters—a 40 GeV particle annihilating to b b-bar with a thermal cross-section, as required tomore » explain the Galactic center GeV excess—we predict that at most ∼ 10 subhalos might be present in the third Fermi LAT source catalog (3FGL). This is a smaller number than has been predicted by prior studies, and we discuss the origin of this difference. We also compare our predictions for the detectability of subhalos with the number of subhalo candidate sources in 3FGL, and derive upper limits on the WIMP annihilation cross-section as a function of the particle mass. If a dark matter interpretation could be excluded for all 3FGL sources, our constraints would be competitive with those found by indirect searches using other targets, such as known Milky Way satellite galaxies.« less

Volumetric Acoustic Vector Intensity Probe

NASA Technical Reports Server (NTRS)

Klos, Jacob

2006-01-01

A new measurement tool capable of imaging the acoustic intensity vector throughout a large volume is discussed. This tool consists of an array of fifty microphones that form a spherical surface of radius 0.2m. A simultaneous measurement of the pressure field across all the microphones provides time-domain near-field holograms. Near-field acoustical holography is used to convert the measured pressure into a volumetric vector intensity field as a function of frequency on a grid of points ranging from the center of the spherical surface to a radius of 0.4m. The volumetric intensity is displayed on three-dimensional plots that are used to locate noise sources outside the volume. There is no restriction on the type of noise source that can be studied. The sphere is mobile and can be moved from location to location to hunt for unidentified noise sources. An experiment inside a Boeing 757 aircraft in flight successfully tested the ability of the array to locate low-noise-excited sources on the fuselage. Reference transducers located on suspected noise source locations can also be used to increase the ability of this device to separate and identify multiple noise sources at a given frequency by using the theory of partial field decomposition. The frequency range of operation is 0 to 1400Hz. This device is ideal for the study of noise sources in commercial and military transportation vehicles in air, on land and underwater.

X-ray astronomy from Uhuru to HEAO-1

NASA Technical Reports Server (NTRS)

Clark, G. W.

1981-01-01

The nature of galactic and extragalactic X-ray sources is investigated using observations made with nine satellites and several rockets. The question of X-ray pulsars being neutron stars or white dwarfs is considered, as is the nature of Population II and low-luminosity X-ray stars, the diffuse X-ray emission from clusters of galaxies, the unidentified high-galactic-latitude (UHGL) sources, and the unresolved soft X-ray background. The types of sources examined include binary pulsars, Population II X-ray stars (both nonbursters and bursters) inside and outside globular clusters, coronal X-ray emitters, and active galactic nuclei. It is concluded that: (1) X-ray pulsars are strongly magnetized neutron stars formed in the evolution of massive close binaries; (2) all Population II X-ray stars are weakly magnetized or nonmagnetic neutron stars accreting from low-mass companions in close binary systems; (3) the diffuse emission from clusters is thermal bremsstrahlung of hot matter processed in stars and swept out by ram pressure exerted by the intergalactic gas; (4) most or all of the UHGL sources are active galactic nuclei; and (5) the soft X-ray background is emission from a hot component of the interstellar medium.

Geophysical variables and behavior: XC. What people consider strange: change in proportions of reports of Fortean phenomena over time.

PubMed

Persinger, M A

2001-02-01

The proportions of 3,667 reports classified as unusual or odd events within eight major categories for four contiguous blocks of time between 1770 and 1970 were compared for disconcordance. The major source of the disconcordance (phi = .52) of reports between the major categories and time was due to the decrease in the numbers of reports of falls of ice, rocks, and animals but increased numbers of reports of odd luminosities, labelled as unidentified flying objects, after the mid 1930s. One hypothesis to explain this result is that cultural changes in attributions for causes of natural phenomena may affect their designation as strange rather than mundane.

Resolution of massive compact clusters in the 30 Doradus periphery with the Hubble Space Telescope

NASA Technical Reports Server (NTRS)

Walborn, Nolan R.; Mackenty, John W.; Saha, Abhijit; White, Richard L.; Parker, Joel WM.

1995-01-01

Hubble Space Telescope Wide Field/Planetary Camera UBV images of three massive, compact multiple systems with the SNR 30 Dor B/NGC 2060 and 30 Dor C/NGC 2044 are discussed and illustrated. In two cases, WN+OB objects have been resolved into additional components to those previously known from ground-based observations, substantially reducing the luminosities of the WN stars and rendering them currently unidentified; in the third case, the components of a B+K composite-spectrum object have been clearly identified. The results are of significance for evolutionary interpretations of these massive stars and for determinations of the upper IMF in extragalactic systems.

Molecular detection of a novel paramyxovirus in fruit bats from Indonesia

PubMed Central

2012-01-01

Background Fruit bats are known to harbor zoonotic paramyxoviruses including Nipah, Hendra, and Menangle viruses. The aim of this study was to detect the presence of paramyxovirus RNA in fruit bats from Indonesia. Methods RNA samples were obtained from the spleens of 110 fruit bats collected from four locations in Indonesia. All samples were screened by semi-nested broad spectrum reverse transcription PCR targeting the paramyxovirus polymerase (L) genes. Results Semi-nested reverse transcription PCR detected five previously unidentified paramyxoviruses from six fruit bats. Phylogenetic analysis showed that these virus sequences were related to henipavirus or rubulavirus. Conclusions This study indicates the presence of novel paramyxoviruses among fruit bat populations in Indonesia. PMID:23082748

Cultural Differences in Donation Decision-Making

PubMed Central

Wang, Jinjun

2015-01-01

Decisions to help those in need are essential for human development and survival. Previous studies have demonstrated the “identified effect”, in which one identifiable individual typically invokes stronger feelings of compassion and receives greater aid than statistical victim. However, this preference might be influenced by cultural differences. In the current study, Chinese respondents’ ratings of distress and sympathy and their willingness to contribute are greater for a group of sick children than an individual. In the U.S., greater willingness to help and sympathy are elicited by an identified victim in comparison with an unidentified one. The different results may demonstrate the importance of cultural differences when trying to understand people’s prosocial behavior. PMID:26372014

A basal dinosaur from the dawn of the dinosaur era in southwestern Pangaea.

PubMed

Martinez, Ricardo N; Sereno, Paul C; Alcober, Oscar A; Colombi, Carina E; Renne, Paul R; Montañez, Isabel P; Currie, Brian S

2011-01-14

Upper Triassic rocks in northwestern Argentina preserve the most complete record of dinosaurs before their rise to dominance in the Early Jurassic. Here, we describe a previously unidentified basal theropod, reassess its contemporary Eoraptor as a basal sauropodomorph, divide the faunal record of the Ischigualasto Formation with biozones, and bracket the formation with (40)Ar/(39)Ar ages. Some 230 million years ago in the Late Triassic (mid Carnian), the earliest dinosaurs were the dominant terrestrial carnivores and small herbivores in southwestern Pangaea. The extinction of nondinosaurian herbivores is sequential and is not linked to an increase in dinosaurian diversity, which weakens the predominant scenario for dinosaurian ascendancy as opportunistic replacement.

A patient with myelodysplastic syndrome studied by GTG-banding and fluorescent in situ hybridization (FISH).

PubMed

Mark, H F; Mark, Y; Sotomayor, E; Sambandam, S

1998-01-01

Molecular cytogenetics using fluorescent in situ hybridization (FISH) is an extremely useful adjunct technique to conventional cytogenetics via GTG-banding. The present paper illustrates the utility of FISH by describing a patient with myelodysplastic syndrome (MDS) who was initially studied using GTG-banding and whose bone marrow was found to be populated with hyperdiploid cells. FISH was used to delineate the numerical and structural chromosomal abnormalities. It revealed the presence of trisomy 8 and determined that the previously unidentifiable marker chromosome was of chromosome 10 origin. Although trisomy 8 is a frequent finding in MDS, the structural chromosomal abnormality of chromosome 10 as reported here is not a common finding.

Health assessment for San Fernando Valley, San Fernando Valley, Los Angeles County, California, Region 9. CERCLIS Nos. 09CAD980894893, 09CAD980894901, 09CAD980894984, 09CAD980894976. Preliminary report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1989-04-10

A large portion of the ground water in the San Fernando Ground water Basin has been contaminated with volatile organic compounds (VOCs) at concentrations of public health concern. The study area encompasses approximately 190 square miles and currently has 4 designated National Priorities List Sites: North Hollywood, Crystal Springs, Pollock, and Verdugo. The primary contaminants in the study area are PCE and TCE, although other VOCs have been identified in the ground water. The sources of the contamination are currently unidentified and therefore physical hazards such as open storage tanks, vessels, drums, pits, or general debris associated with the sourcesmore » cannot be fully addressed. The sites are considered to be of public health concern because of the risk to human health caused by the likelihood of exposure to hazardous substances through the use of the contaminated groundwater and the potential for exposure at the contaminant source(s) through other exposure pathways.« less

Gamma-rays from the binary system containing PSR J2032+4127 during its periastron passage

NASA Astrophysics Data System (ADS)

Bednarek, Włodek; Banasiński, Piotr; Sitarek, Julian

2018-01-01

The energetic pulsar, PSR J2032+4127, has recently been discovered in the direction of the unidentified HEGRA TeV γ-ray source (TeV J2032+4130). It is proposed that this pulsar forms a binary system with the Be type star, MT91 213, expected to reach periastron late in 2017. We performed detailed calculations of the γ-ray emission produced close to the binary system’s periastron passage by applying a simple geometrical model. Electrons accelerated at the collision region of pulsar and stellar winds initiate anisotropic inverse Compton {e}+/- pair cascades by scattering soft radiation from the massive companion. The γ-ray spectra, from such a comptonization process, are compared with the measurements of the extended TeV γ-ray emission from the HEGRA TeV γ-ray source. We discuss conditions within the binary system, at the periastron passage of the pulsar, for which the γ-ray emission from the binary can overcome the extended, steady TeV γ-ray emission from the HEGRA TeV γ-ray source.

Unrecognized astrometric confusion in the Galactic Centre

NASA Astrophysics Data System (ADS)

Plewa, P. M.; Sari, R.

2018-06-01

The Galactic Centre is a crowded stellar field and frequent unrecognized events of source confusion, which involve undetected faint stars, are expected to introduce astrometric noise on a sub-mas level. This confusion noise is the main non-instrumental effect limiting the astrometric accuracy and precision of current near-infrared imaging observations and the long-term monitoring of individual stellar orbits in the vicinity of the central supermassive black hole. We self-consistently simulate the motions of the known and the yet unidentified stars to characterize this noise component and show that a likely consequence of source confusion is a bias in estimates of the stellar orbital elements, as well as the inferred mass and distance of the black hole, in particular if stars are being observed at small projected separations from it, such as the star S2 during pericentre passage. Furthermore, we investigate modelling the effect of source confusion as an additional noise component that is time-correlated, demonstrating a need for improved noise models to obtain trustworthy estimates of the parameters of interest (and their uncertainties) in future astrometric studies.

Growth and Proteome Response of Temperate and Polar Diatoms Thalassiosira pseudonana and Chaetoceros sp. to variations in Cobalt and Zinc: Identification of the High-Affinity Zinc Transporter and Potential for Use as a Biomarker

NASA Astrophysics Data System (ADS)

Kellogg, M. M.; Moran, D. M.; McIlvin, M. R.; Allen, A. E.; Saito, M. A.

2016-02-01

Marine diatoms such as the temperate Thalassiosira pseudonana (Tp) and the polar Chaetoceros sp (Ch) are known to be important contributors to marine primary productivity and the global carbon cycle. The nutritional use of zinc (Zn) in diatoms and the ability to substitute cobalt (Co) for Zn has been previously demonstrated to be of importance in their growth and biochemistry. We conducted physiological experiments with Zn and Co on these diatoms and analyzed their proteomic response. Growth studies involving Tp confirmed previous studies' findings showing Zn/Co substitution, while studies on Ch showed a toxic response to high Zn abundances. Proteome responses of Tp to Zn limitation identified a putative and previously unidentified transporter that was undetectable at high Zn concentration and became highly abundant at two lower Zn concentrations. The distribution of this protein in nature and its potential use as a Zn stress biomarker in diatoms will be discussed.

Microarray-based characterization of differential gene expression during vocal fold wound healing in rats

PubMed Central

Welham, Nathan V.; Ling, Changying; Dawson, John A.; Kendziorski, Christina; Thibeault, Susan L.; Yamashita, Masaru

2015-01-01

The vocal fold (VF) mucosa confers elegant biomechanical function for voice production but is susceptible to scar formation following injury. Current understanding of VF wound healing is hindered by a paucity of data and is therefore often generalized from research conducted in skin and other mucosal systems. Here, using a previously validated rat injury model, expression microarray technology and an empirical Bayes analysis approach, we generated a VF-specific transcriptome dataset to better capture the system-level complexity of wound healing in this specialized tissue. We measured differential gene expression at 3, 14 and 60 days post-injury compared to experimentally naïve controls, pursued functional enrichment analyses to refine and add greater biological definition to the previously proposed temporal phases of VF wound healing, and validated the expression and localization of a subset of previously unidentified repair- and regeneration-related genes at the protein level. Our microarray dataset is a resource for the wider research community and has the potential to stimulate new hypotheses and avenues of investigation, improve biological and mechanistic insight, and accelerate the identification of novel therapeutic targets. PMID:25592437

Geomicrobiology of the Ocean Crust: The Phylogenetic Diversity, Abundance, and Distribution of Microbial Communities Inhabiting Basalt and Implications for Rock Alteration Processes

DTIC Science & Technology

2007-06-01

AF317741) 93 EPR3970- MOlA -Bc32 gamma-Proteobacteria Uncultured gamma proteobacterium clone AT-s80 (AY225635) 99 FPR3970-MO IA-Bc33 Actinobacteria...bacterium partial I AJ966584) 99 1iPR3970- MOlA -Bc65 Unidentified Uncultured bacterium clone CV90 (DQ499320) 89 1iPR3970- MOlA -Bc66 Unidentified Uncultured

UNIDENTIFIED CATENARY SUSPENSION BRIDGE ON RIVETED METAL PIERS, SHOWING HOWE ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

UNIDENTIFIED CATENARY SUSPENSION BRIDGE ON RIVETED METAL PIERS, SHOWING HOWE PIPE TRUSS RAILING AND TRUSSED DECK BEAMS TYPICAL TO BRIDGES BUILT BY FLINN-MOYER COMPANY. TRIPODAL PIPE TOWERS RESEMBLE CLEAR FORK OF THE BRAZOS SUSPENSION BRIDGE’S TOWERS PRIOR TO ENCASEMENT IN CONCRETE. NOTE COLLAPSED TRUSS IN RIVER. ELEVATION VIEW. - Clear Fork of Brazos River Suspension Bridge, Spanning Clear Fork of Brazos River at County Route 179, Albany, Shackelford County, TX

Dynamical compensation and structural identifiability of biological models: Analysis, implications, and reconciliation.

PubMed

Villaverde, Alejandro F; Banga, Julio R

2017-11-01

The concept of dynamical compensation has been recently introduced to describe the ability of a biological system to keep its output dynamics unchanged in the face of varying parameters. However, the original definition of dynamical compensation amounts to lack of structural identifiability. This is relevant if model parameters need to be estimated, as is often the case in biological modelling. Care should we taken when using an unidentifiable model to extract biological insight: the estimated values of structurally unidentifiable parameters are meaningless, and model predictions about unmeasured state variables can be wrong. Taking this into account, we explore alternative definitions of dynamical compensation that do not necessarily imply structural unidentifiability. Accordingly, we show different ways in which a model can be made identifiable while exhibiting dynamical compensation. Our analyses enable the use of the new concept of dynamical compensation in the context of parameter identification, and reconcile it with the desirable property of structural identifiability.

Estimation of contamination sources of human enteroviruses in a wastewater treatment and reclamation system by PCR-DGGE.

PubMed

Ji, Zheng; Wang, Xiaochang C; Xu, Limei; Zhang, Chongmiao; Funamizu, Naoyuki; Okabe, Satoshi; Sano, Daisuke

2014-06-01

A polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) method was employed to estimate the contamination sources of human enteroviruses and understand how their dominant strains vary in a wastewater treatment and reclamation system consisting of sewage collection, wastewater treatment with membrane bioreactor and open lakes for reclaimed water storage and reuse. After PCR-DGGE using a selected primer set targeting enteroviruses, phylogenetic analysis of acquired enterovirus gene sequences was performed. Enteroviruses identified from the septic tank were much more diverse than those from grey water and kitchen wastewater. Several unique types of enterovirus different from those in wastewater samples were dominant in a biological wastewater treatment unit. Membrane filtration followed by chlorination was proved effective for physically eliminating enteroviruses; however, secondary contamination likely occurred as the reclaimed water was stored in artificial lakes. Enterovirus 71 (EV71), a hand-foot-and-mouth disease (HFMD) viral pathogen, was detected mainly from the artificial lakes, implying that wastewater effluent was not the contamination source of EV71 and that there were unidentified non-point sources of the contamination with the HFMD viral pathogen in the reclaimed water stored in the artificial lakes. The PCR-DGGE targeting enteroviruses provided robust evidence about viral contamination sources in the wastewater treatment and reclamation system.

Variation with interplanetary sector of the total magnetic field measured at the OGO 2, 4, and 6 satellites

NASA Technical Reports Server (NTRS)

Langel, R. A.

1973-01-01

Variations in the scalar magnetic field (delta B) from the polar orbiting OGO 2, 4, and 6 spacecraft are examined as a function of altitude for times when the interplanetary magnetic field is toward the sun and for times when the interplanetary magnetic field away from the sun. This morphology is basically the same as that found when all data, irrespective of interplanetary magnetic sector, are averaged together. Differences in delta B occur, both between sectors and between seasons, which are similar in nature to variations in the surface delta Z found by Langel (1973c). The altitude variation of delta B at sunlit local times, together with delta Z at the earth's surface, demonstrates that the delta Z and delta B which varies with sector has an ionospheric source. Langel (1973b) showed that the positive delta B region in the dark portion of the hemisphere is due to at least two sources, the westward electrojet and an unidentified non-ionospheric source(s). Comparison of magnetic variations between season/sector at the surface and at the satellite, in the dark portion of the hemisphere, indicates that these variations are caused by variations in the latitudinally narrow electrojet currents and not by variations in the non-ionospheric source of delta B.

Microscopic Sources of Paramagnetic Noise on α-Al2O3 Substrates for Superconducting Qubits

NASA Astrophysics Data System (ADS)

Dubois, Jonathan; Lee, Donghwa; Lordi, Vince

2014-03-01

Superconducting qubits (SQs) represent a promising route to achieving a scalable quantum computer. However, the coupling between electro-dynamic qubits and (as yet largely unidentified) ambient parasitic noise sources has so far limited the functionality of current SQs by limiting coherence times of the quantum states below a practical threshold for measurement and manipulation. Further improvement can be enabled by a detailed understanding of the various noise sources afflicting SQs. In this work, first principles density functional theory (DFT) calculations are employed to identify the microscopic origins of magnetic noise sources in SQs on an α-Al2O3 substrate. The results indicate that it is unlikely that the existence of intrinsic point defects and defect complexes in the substrate are responsible for low frequency noise in these systems. Rather, a comprehensive analysis of extrinsic defects shows that surface aluminum ions interacting with ambient molecules will form a bath of magnetic moments that can couple to the SQ paramagnetically. The microscopic origin of this magnetic noise source is discussed and strategies for ameliorating the effects of these magnetic defects are proposed. This work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344.

Spatially Resolving the Very High Energy Emission from MGRO J2019+37 with VERITAS

NASA Astrophysics Data System (ADS)

Aliu, E.; Aune, T.; Behera, B.; Beilicke, M.; Benbow, W.; Berger, K.; Bird, R.; Bouvier, A.; Buckley, J. H.; Bugaev, V.; Cerruti, M.; Chen, X.; Ciupik, L.; Connolly, M. P.; Cui, W.; Dumm, J.; Dwarkadas, V. V.; Errando, M.; Falcone, A.; Federici, S.; Feng, Q.; Finley, J. P.; Fleischhack, H.; Fortin, P.; Fortson, L.; Furniss, A.; Galante, N.; Gillanders, G. H.; Gotthelf, E. V.; Griffin, S.; Griffiths, S. T.; Grube, J.; Gyuk, G.; Hanna, D.; Holder, J.; Hughes, G.; Humensky, T. B.; Johnson, C. A.; Kaaret, P.; Kargaltsev, O.; Kertzman, M.; Khassen, Y.; Kieda, D.; Krennrich, F.; Lang, M. J.; Madhavan, A. S.; Maier, G.; McArthur, S.; McCann, A.; Millis, J.; Moriarty, P.; Mukherjee, R.; Nieto, D.; O'Faoláin de Bhróithe, A.; Ong, R. A.; Otte, A. N.; Pandel, D.; Park, N.; Pohl, M.; Popkow, A.; Prokoph, H.; Quinn, J.; Ragan, K.; Rajotte, J.; Reyes, L. C.; Reynolds, P. T.; Richards, G. T.; Roache, E.; Roberts, M.; Sembroski, G. H.; Shahinyan, K.; Smith, A. W.; Staszak, D.; Telezhinsky, I.; Tucci, J. V.; Tyler, J.; Vincent, S.; Wakely, S. P.; Weinstein, A.; Welsing, R.; Wilhelm, A.; Williams, D. A.; Zitzer, B.

2014-06-01

We present very high energy (VHE) imaging of MGRO J2019+37 obtained with the VERITAS observatory. The bright extended (~2°) unidentified Milagro source is located toward the rich star formation region Cygnus-X. MGRO J2019+37 is resolved into two VERITAS sources. The faint, point-like source VER J2016+371 overlaps CTB 87, a filled-center remnant (SNR) with no evidence of a supernova remnant shell at the present time. Its spectrum is well fit in the 0.65-10 TeV energy range by a power-law model with photon index 2.3 ± 0.4. VER J2019+378 is a bright extended (~1°) source that likely accounts for the bulk of the Milagro emission and is notably coincident with PSR J2021+3651 and the star formation region Sh 2-104. Its spectrum in the range 1-30 TeV is well fit with a power-law model of photon index 1.75 ± 0.3, among the hardest values measured in the VHE band, comparable to that observed near Vela-X. We explore the unusual spectrum and morphology in the radio and X-ray bands to constrain possible emission mechanisms for this source.

Surfing for scoliosis: the quality of information available on the Internet.

PubMed

Mathur, Sameer; Shanti, Nael; Brkaric, Mario; Sood, Vivek; Kubeck, Justin; Paulino, Carl; Merola, Andrew A

2005-12-01

A cross section of Web sites accessible to the general public was surveyed. To evaluate the quality and accuracy of information on scoliosis that a patient might access on the Internet. The Internet is a rapidly expanding communications network with an estimated 765 million users worldwide by the year 2005. Medical information is one of the most common sources of inquires on the Web. More than 100 million Americans accessed the Internet for medical information in the year 2000. Undoubtedly, the use of the Internet for patient information needs will continue to expand as Internet access becomes more readily available. This expansion combined with the Internet's poorly regulated format can lead to problems in the quality of information available. Since the Internet operates on a global scale, implementing and enforcing standards have been difficult. The largely uncontrolled information can potentially negatively influence consumer health outcomes. To identify potential sites, five search engines were selected and the word "scoliosis" was entered into each search engine. A total of 50 Web sites were chosen for review. Each Web site was evaluated according to the type of Web site, quality content, and informational accuracy by three board-certified academic orthopedic surgeons, fellowship trained in spinal surgery, who each has been in practice for a minimum of 8 years. Each Web site was categorized as academic, commercial, physician, nonphysician health professional, and unidentified. In addition, each Web site was evaluated according to scoliosis-specific content using a point value system of 32 disease-specific key words pertinent to the care of scoliosis on an ordinal scale. A list of these words is given. Point values were given for the use of key words related to disease summary, classifications, treatment options, and complications. The accuracy of the individual Web site was evaluated by each spine surgeon using a scale of 1 to 4. A score of 1 represents that the examiner agreed with less than 25% of the information while a score of 4 represents greater than 75% agreement. Of the total 50 Web sites evaluated, 44% were academic, 18% were physician based, 16% were commercial, 12% were unidentified, and 10% were nonphysician health professionals. The quality content score (maximum, 32 points) for academic sites was 12.6 +/- 3.8, physician sites 11.3 +/- 4.0, commercial sites 11 +/- 4.2, unidentified 7.6 +/- 3.9, and nonphysician health professional site 7.0 +/- 1.8. The accuracy score (maximum, 12 points) was 6.6 +/- 2.4 for academic sites, 6.3 +/- 3.0 for physician-professional sites, 6.0 +/- 2.7 for unidentified sites, 5.5 +/- 3.8 for nonphysician professional sites, and 5.0 +/- 1.5 for commercial Web sites. The academic Web sites had the highest mean scores in both quality and accuracy content scores. The information about scoliosis on the Internet is of limited quality and poor information value. Although the majority of the Web sites were academic, the content quality and accuracy scores were still poor. The lowest scoring Web sites were the nonphysician professionals and the unidentified sites, which were often message boards. Overall, the highest scoring Web site related to both quality and accuracy of information was www.srs.org. This Web site was designed by the Scoliosis Research Society. The public and the medical communities need to be aware of these existing limitations of the Internet. Based on our review, the physician must assume primary responsibility of educating and counseling their patients.

Exome Sequencing Analysis Reveals Variants in Primary Immunodeficiency Genes in Patients With Very Early Onset Inflammatory Bowel Disease

PubMed Central

Kelsen, Judith R.; Dawany, Noor; Moran, Christopher J.; Petersen, Britt-Sabina; Sarmady, Mahdi; Sasson, Ariella; Pauly-Hubbard, Helen; Martinez, Alejandro; Maurer, Kelly; Soong, Joanne; Rappaport, Eric; Franke, Andre; Keller, Andreas; Winter, Harland S.; Mamula, Petar; Piccoli, David; Artis, David; Sonnenberg, Gregory F.; Daly, Mark; Sullivan, Kathleen E.; Baldassano, Robert N.; Devoto, Marcella

2016-01-01

Background & Aims Very early onset inflammatory bowel disease (VEO-IBD), IBD diagnosed ≤5 y of age, frequently presents with a different and more severe phenotype than older-onset IBD. We investigated whether patients with VEO-IBD carry rare or novel variants in genes associated with immunodeficiencies that might contribute to disease development. Methods Patients with VEO-IBD and parents (when available) were recruited from the Children's Hospital of Philadelphia from March 2013 through July 2014. We analyzed DNA from 125 patients with VEO-IBD (ages 3 weeks to 4 y) and 19 parents, 4 of whom also had IBD. Exome capture was performed by Agilent SureSelect V4, and sequencing was performed using the Illumina HiSeq platform. Alignment to human genome GRCh37 was achieved followed by post-processing and variant calling. Following functional annotation, candidate variants were analyzed for change in protein function, minor allele frequency <0.1%, and scaled combined annotation dependent depletion scores ≤10. We focused on genes associated with primary immunodeficiencies and related pathways. An additional 210 exome samples from patients with pediatric IBD (n=45) or adult-onset Crohn's disease (n=20) and healthy individuals (controls, n=145) were obtained from the University of Kiel, Germany and used as control groups. Results Four-hundred genes and regions associated with primary immunodeficiency, covering approximately 6500 coding exons totaling > 1 Mbp of coding sequence, were selected from the whole exome data. Our analysis revealed novel and rare variants within these genes that could contribute to the development of VEO-IBD, including rare heterozygous missense variants in IL10RA and previously unidentified variants in MSH5 and CD19. Conclusions In an exome sequence analysis of patients with VEO-IBD and their parents, we identified variants in genes that regulate B- and T-cell functions and could contribute to pathogenesis. Our analysis could lead to the identification of previously unidentified IBD-associated variants. PMID:26193622

Uncoupling of Protease trans-Cleavage and Helicase Activities in Pestivirus NS3

PubMed Central

Zheng, Fengwei; Lu, Guoliang; Li, Ling

2017-01-01

ABSTRACT The nonstructural protein NS3 from the Flaviviridae family is a multifunctional protein that contains an N-terminal protease and a C-terminal helicase, playing essential roles in viral polyprotein processing and genome replication. Here we report a full-length crystal structure of the classical swine fever virus (CSFV) NS3 in complex with its NS4A protease cofactor segment (PCS) at a 2.35-Å resolution. The structure reveals a previously unidentified ∼2,200-Å2 intramolecular protease-helicase interface comprising three clusters of interactions, representing a “closed” global conformation related to the NS3-NS4A cis-cleavage event. Although this conformation is incompatible with protease trans-cleavage, it appears to be functionally important and beneficial to the helicase activity, as the mutations designed to perturb this conformation impaired both the helicase activities in vitro and virus production in vivo. Our work reveals important features of protease-helicase coordination in pestivirus NS3 and provides a key basis for how different conformational states may explicitly contribute to certain functions of this natural protease-helicase fusion protein. IMPORTANCE Many RNA viruses encode helicases to aid their RNA genome replication and transcription by unwinding structured RNA. Being naturally fused to a protease participating in viral polyprotein processing, the NS3 helicases encoded by the Flaviviridae family viruses are unique. Therefore, how these two enzyme modules coordinate in a single polypeptide is of particular interest. Here we report a previously unidentified conformation of pestivirus NS3 in complex with its NS4A protease cofactor segment (PCS). This conformational state is related to the protease cis-cleavage event and is optimal for the function of helicase. This work provides an important basis to understand how different enzymatic activities of NS3 may be achieved by the coordination between the protease and helicase through different conformational states. PMID:28835495

The QDOT all-sky IRAS galaxy redshift survey

NASA Astrophysics Data System (ADS)

Lawrence, A.; Rowan-Robinson, M.; Ellis, R. S.; Frenk, C. S.; Efstathiou, G.; Kaiser, N.; Saunders, W.; Parry, I. R.; Xiaoyang, Xia; Crawford, J.

1999-10-01

We describe the construction of the QDOT survey, which is publicly available from an anonymous FTP account. The catalogue consists of infrared properties and redshifts of an all-sky sample of 2387 IRAS galaxies brighter than the IRAS PSC 60-μm completeness limit (S_60>0.6Jy), sparsely sampled at a rate of one-in-six. At |b|>10 deg, after removing a small number of Galactic sources, the redshift completeness is better than 98per cent (2086/2127). New redshifts for 1401 IRAS sources were obtained to complete the catalogue; the measurement and reduction of these are described, and the new redshifts tabulated here. We also tabulate all sources at |b|>10 deg with no redshift so far, and sources with conflicting alternative redshifts either from our own work, or from published velocities. A list of 95 ultraluminous galaxies (i.e. with L_60μm>10^12 L_solar) is also provided. Of these, ~20per cent are AGN of some kind; the broad-line objects typically show strong Feii emission. Since the publication of the first QDOT papers, there have been several hundred velocity changes: some velocities are new, some QDOT velocities have been replaced by more accurate values, and some errors have been corrected. We also present a new analysis of the accuracy and linearity of IRAS 60-μm fluxes. We find that the flux uncertainties are well described by a combination of 0.05-Jy fixed size uncertainty and 8per cent fractional uncertainty. This is not enough to cause the large Malmquist-type errors in the rate of evolution postulated by Fisher et al. We do, however, find marginal evidence for non-linearity in the PSC 60-μm flux scale, in the sense that faint sources may have fluxes overestimated by about 5per cent compared with bright sources. We update some of the previous scientific analyses to assess the changes. The main new results are as follows. (1) The luminosity function is very well determined overall but is uncertain by a factor of several at the very highest luminosities (L_60μm>5x10^12L_solar), as this is where the remaining unidentified objects are almost certainly concentrated. (2) The best-fitting rate of evolution is somewhat lower than our previous estimate; expressed as pure density evolution with density varying as (1+z)^p, we find p=5.6+/-2.3. Making a rough correction for the possible (but very uncertain) non-linearity of fluxes, we find p=4.5+/-2.3. (3) The dipole amplitude decreases a little, and the implied value of the density parameter, assuming that IRAS galaxies trace the mass, is Ω=0.9(+0.45, -0.25). (4) Finally, the estimate of density variance on large scales changes negligibly, still indicating a significant discrepancy from the predictions of simple cold dark matter cosmogonies.

Patterns of gastro-intestinal parasites and commensals as an index of population and ecosystem health: the case of sympatric western chimpanzees (Pan troglodytes verus) and guinea baboons (Papio hamadryas papio) at Fongoli, Senegal.

PubMed

Howells, Michaela E; Pruetz, Jill; Gillespie, Thomas R

2011-02-01

The exponential decline of great apes over the past 50 years has resulted in an urgent need for data to inform population viability assessment and conservation strategies. Health monitoring of remaining ape populations is an important component of this process. In support of this effort, we examined endoparasitic and commensal prevalence and richness as proxies of population health for western chimpanzees (Pan troglodytes verus) and sympatric guinea baboons (Papio hamadryas papio) at Fongoli, Senegal, a site dominated by woodland-savanna at the northwestern extent of chimpanzees' geographic range. The small population size and extreme environmental pressures experienced by Fongoli chimpanzees make them particularly sensitive to the potential impact of pathogens. One hundred thirty-two chimpanzee and seventeen baboon fecal samples were processed using sodium nitrate floatation and fecal sedimentation to isolate helminth eggs, larvae, and protozoal cysts. Six nematodes (Physaloptera sp., Ascaris sp., Stronglyloides fuelleborni, Trichuris sp., an unidentified hookworm, and an unidentified larvated nematode), one cestode (Bertiella sp.), and five protozoans (Iodamoeba buetschlii, Entamoeba coli, Troglodytella abrassarti, Troglocorys cava, and an unidentified ciliate) were detected in chimpanzee fecal samples. Four nematodes (Necator sp., S. fuelleborni, Trichuris sp., and an unidentified hookworm sp.), two trematodes (Shistosoma mansoni and an unidentified fluke), and six protozoans (Entamoeba histolytica/dispar, E. coli, Chilomastix mesnili, Balantidium coli, T. abrassarti, and T. cava) were detected in baboon fecal samples. The low prevalence of pathogenic parasite species and high prevalence of symbiotic protozoa in Fongoli chimpanzees are indicative of good overall population health. However, the high prevalence of pathogenic parasites in baboons, who may serve as transport hosts, highlight the need for ongoing pathogen surveillance of the Fongoli chimpanzee population and point to the need for further research into the epidemiology and cross-species transmission ecology of zoonotic pathogens at this site. © 2010 Wiley-Liss, Inc.

Paracoccus panacisoli sp. nov., isolated from a forest soil cultivated with Vietnamese ginseng.

PubMed

Nguyen, Ngoc-Lan; Kim, Yeon-Ju; Hoang, Van-An; Tran, Bao-Tram; Pham, Huong-Son; Yang, Deok-Chun

2015-05-01

A novel bacterial strain, designated DCY94(T), was isolated from forest soil cultivated with ginseng in Vietnam. The strain was Gram-reaction-negative, facultatively anaerobic, non-motile, rod-shaped and catalase- and oxidase-positive. 16S rRNA gene sequence analysis demonstrated that strain DCY94(T) was closely related to Paracoccus sphaerophysae Zy-3(T) (97.5% 16S rRNA gene sequence similarity) and Paracoccus caeni MJ17(T) (96.9%). The fatty acid profile of strain DCY94(T) contained a predominant amount of summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c; 88.4%) and moderate to small quantities of C8 : 0 3-OH (1.0%), C10 : 0 3-OH (2.8%) and C18 : 0 (5.2%). Phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine and one unidentified glycolipid were major polar lipids; one unidentified aminolipid, one unidentified aminophospholipid, one unidentified phospholipid and four unidentified polar lipids were minor components. The polyamine pattern comprised the major compounds putrescine and spermidine and minor amounts of sym-homospermidine and spermine. The ubiquinone of the strain was Q-10 and the G+C content of its genomic DNA was 68.3 mol%. All these results support the placement of strain DCY94(T) within the genus Paracoccus . Levels of DNA-DNA relatedness between strain DCY94(T) and P. sphaerophysae HAMBI 3106(T) and P. caeni KCTC 22480(T) were 52 and 50%, respectively. The results of phylogenetic analysis, phenotypic tests, chemotaxonomic characterization and DNA-DNA relatedness studies distinguished strain DCY94(T) from the closest recognized species of the genus Paracoccus , suggesting that this strain represents a novel species, for which the name Paracoccus panacisoli sp. nov. is proposed. The type strain is DCY94(T) ( = KCTC 42086(T) =JCM 30337(T)). © 2015 IUMS.

Paenibacillus lupini sp. nov., isolated from nodules of Lupinus albus.

PubMed

Carro, Lorena; Flores-Félix, José David; Ramírez-Bahena, Martha-Helena; García-Fraile, Paula; Martínez-Hidalgo, Pilar; Igual, José M; Tejedor, Carmen; Peix, Alvaro; Velázquez, Encarna

2014-09-01

A bacterial strain designated RLAHU15(T) was isolated from root nodules of Lupinus albus in Spain. Phylogenetic analyses based on 16S rRNA gene sequences placed the isolate in the genus Paenibacillus, with its closest relatives being Paenibacillus catalpae D75(T), Paenibacillus glycanilyticus DS-1(T), Paenibacillus endophyticus PECAE04(T) and Paenibacillus xinjiangensis B538(T) with 98.8 %, 98.9 %, 97.4 % and 97.4 % similarity, respectively. DNA-DNA hybridization studies showed values lower than 45 % between the strain RLAHU15(T) and any of these species. The isolate was a Gram-stain positive, motile and sporulating rod. Catalase activity was weak and oxidase activity was positive. Casein and starch were hydrolysed but gelatin was not. Growth was supported by many carbohydrates and organic acids as carbon sources. MK-7 was the only menaquinone detected and anteiso-C15 : 0 and iso-C16 : 0 were the major fatty acids. The major polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, three unidentified phospholipids and an unidentified lipid. meso-Diaminopimelic acid was detected in the peptidoglycan. The DNA G+C content was 54.4 mol%. Phylogenetic, chemotaxonomic and phenotypic analyses showed that strain RLAHU15(T) represents a novel species of the genus Paenibacillus, for which the name Paenibacillus lupini sp. nov. is proposed. The type strain is RLAHU15(T) ( = LMG 27296(T) = CECT 8235(T)). © 2014 IUMS.

Somatic Symptom Disorder in Semantic Dementia: The Role of Alexisomia.

PubMed

Gan, Joanna J; Lin, Andrew; Samimi, Mersal S; Mendez, Mario F

Semantic dementia (SD) is a neurodegenerative disorder characterized by loss of semantic knowledge. SD may be associated with somatic symptom disorder due to excessive preoccupation with unidentified somatic sensations. To evaluate the frequency of somatic symptom disorder among patients with SD in comparison to comparably demented patients with Alzheimer׳s disease. A retrospective cohort study was conducted using clinical data from a referral-based behavioral neurology program. Fifty-three patients with SD meeting criteria for imaging-supported semantic variant primary progressive aphasia (another term for SD) were compared with 125 patients with clinically probable Alzheimer disease. Logistic regression controlled for sex, age, disease duration, education, overall cognitive impairment, and depression. The prevalence of somatic symptom disorder was significantly higher among patients with SD (41.5%) compared to patients with Alzheimer disease (11.2%) (odds ratio = 6:1; p < 0.001). Somatic symptom disorder was associated with misidentification and preoccupation with normal bodily sensations such as hunger, bladder filling, borborygmi, rhinorrhea, and reflux; excessive concern over the incompletely understood meaning or source of pain or other symptoms; and Cotard syndrome or the delusion that unidentified somatic symptoms signify death or deterioration. SD, a disorder of semantic knowledge, is associated with somatic symptom disorder from impaired identification of somatic sensations. Their inability to read and name somatic sensations, or "alexisomia," results in disproportionate and persistent concern about somatic sensations with consequent significant disability. Copyright © 2016 The Academy of Psychosomatic Medicine. Published by Elsevier Inc. All rights reserved.

Novel methyl transfer during chemotaxis in Bacillus subtilis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thoelke, M.S.; Kirby, J.R.; Ordal, G.W.

1989-06-27

If Bacillus subtilis is incubated in radioactive methionine in the absence of protein synthesis, the methyl-accepting chemotaxis proteins (MCPs) become radioactively methylated. If the bacteria are further incubated in excess nonradioactive methionine (cold-chased) and then given the attractant aspartate, the MCPs lose about half of their radioactivity due to turnover, in which lower specific activity methyl groups from S-adenosylmethionine (AdoMet) replace higher specific activity ones. Due to the cold-chase, the specific activity of the AdoMet pool is reduced at least 2-fold. If, later, the attractant is removed, higher specific activity methyl groups return to the MCPs. Thus, there must existmore » an unidentified methyl carrier than can reversibly receive methyl groups from the MCPs. In a similar experiment, labeled cells were transferred to a flow cell and exposed to addition and removal of attractant and of repellent. All four kinds of stimuli were found to cause methanol production. Bacterial with maximally labeled MCPs were exposed to many cycles of addition and removal of attractant; the maximum amount of radioactive methanol was evolved on the third, not the first, cycle. This result suggests that there is a precursor-product relationship between methyl groups on the MCPs and on the unidentified carrier, which might be the direct source of methanol. However, since no methanol was produced when a methyltransferase mutant, whose MCPs were unmethylated, was exposed to addition and removal of attractant or repellent, the methanol must ultimately derive from methylated MCPs.« less

Early Cretaceous stratigraphy, paleontology, and sedimentary tectonics in Paris overthrust foredeep (western Wyoming and southeastern Idaho) compared with Quaternary features of indo-gangetic plain

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dorr, J.A. Jr.

1983-08-01

Fluviatile clastics of the nonmarine, early Cretaceous Gannett and Wayan groups were deposited on wet alluvial megafans and on intervening interfan piedmont slopes which declined eastward into more poorly drained lowlands from a western highland source area uplifted episodically by movements of the Paris overthrust. Lacustrine episodes of deposition intercalated Peterson and Draney limestones with Gannett fluvial clastics. Westward marine transgressions (Skull Creek, Mowry) intercalated mixed lacustrine and brackish facies (Smiths and Cokedale formations) into Wayan fluviatile clastics. Newly discovered fossil vertebrate and invertebrate materials (all fragmentary but identifiable) include: Gannett Group - large reptiles including turtles; Thomas Fork Formationmore » - freshwater gastropods and unionid pelecypods, gastroliths, two types of turtles, large reptilian fragments (dinosaur), and abundant dinosaur eggshell fragments; Wayan Formation - perennially aquatic snails, turtles, unidentifiable large reptiles, two types of crocodilians, an iguanodontid dinosaur (Tenontosaurus), an ankylosaurian dinosaur, a large ornithopod dinosaur, gastroliths, abundant and ubiquitous dinosaur eggshell fragments (numerous types and sizes), and miscellaneous unidentifiable small vertebrate bone fragments. A census of analogous modern reptile reproductive behaviors supports the conclusion that the Wayan, and probably also the Gannett, alluvial fan environments were used as upland breeding grounds by dinosaurs and perhaps other reptiles. Comparison of these Early Cretaceous data with observations on the tectonic setting, sedimentology, and biology of the Quaternary indo-gangetic plain suggests many close analogies between the two sedimentary tectonic settings.« less

Comparison of hybrid receptor models to locate PCB sources in Chicago

NASA Astrophysics Data System (ADS)

Hsu, Ying-Kuang; Holsen, Thomas M.; Hopke, Philip K.

Results of three hybrid receptor models, potential source contribution function (PSCF), concentration weighted trajectory (CWT), and residence time weighted concentration (RTWC), were compared for locating polychlorinated biphenyl (PCB) sources contributing to the atmospheric concentrations in Chicago. Variations of these models, including PSCF using mean and 75% criterion concentrations, joint probability PSCF (JP-PSCF), changes of point filters and grid cell sizes for RTWC, and PSCF using wind trajectories started at different altitudes, are also discussed. Modeling results were relatively consistent between models. However, no single model provided as complete information as was obtained by using all of them. CWT and 75% PSCF appears to be able to distinguish between larger sources and moderate ones. RTWC resolved high potential source areas. RTWC and JP-PSCF pooling data from all sampling sites removed the trailing effect often seen in PSCF modeling. PSCF results using average concentration criteria, appears to identify both moderate and major sources. Each model has advantages and disadvantages. However, used in combination, they provide information that is not available if only one of them is used. For short-range atmospheric transport, PSCF results were consistent when using wind trajectories starting at different heights. Based on the archived PCB data, the modeling results indicate there is a large potential source area between Joliet and Kankakee, IL, and two moderate sources to the northwest and south of Chicago. On the south side of Chicago in the neighborhood of Lake Calumet, several PCB sources were identified. Other unidentified potential source location(s) will require additional upwind/downwind field sampling to verify modeling results.

Production of fumonisin B and C analogues by several fusarium species.

PubMed

Sewram, Vikash; Mshicileli, Ndumiso; Shephard, Gordon S; Vismer, Hester F; Rheeder, John P; Lee, Yin-Won; Leslie, John F; Marasas, Walter F O

2005-06-15

Six strains of Fusarium verticillioides, two of F. oxysporum, one strain of F. proliferatum, and a strain of an unidentified species were cultured on maize patties and rice and evaluated for their ability to simultaneously produce fumonisin B (FB) and C (FC) series analogues. Fumonisins were quantified by LC-MS-MS using positive ion electrospray ionization. FC1 provided characteristic fragment ions at m/z 690, 672, 654, 532, 514, and 338 corresponding to sequential loss of H2O and tricarboxylic acid moieties from the alkyl backbone, while FC3 and FC4 provided equivalent product ions 16 and 32 amu lower than the corresponding FC1 fragments, respectively. All isolates cultured on maize produced FC4. All isolates except for that of F. proliferatum also produced FC1, and three of the six strains of F. verticillioides produced FC3. All isolates except those of F. oxysporum produced detectable amounts of FB1, FB2, and FB3. Isolates that produced fumonisin B analogues produced at least 10 fold more of the B series analogues than they did of the C series analogues. The results confirm that at least some strains of F. oxysporum produce FC, but not FB, fumonisin analogues and also suggest that the genetics and physiological regulation of fumonisin production may be more complicated than previously envisaged since some strains of F. verticillioides and F. proliferatum as well as the strain of the unidentified species can simultaneously produce both FB and FC analogues.

Genetic sequence data identifies the cercaria of Drepanocephalus spathans (Digenea: Echinostomatidae), a parasite of the double-crested cormorant (Phalacrocorax auritus), with notes on its pathology in juvenile channel catfish (Ictalurus punctatus).

PubMed

Griffin, Matt J; Khoo, Lester H; Quiniou, Sylvie M; O'Hear, Mary M; Pote, Linda M; Greenway, Terrence E; Wise, David J

2012-10-01

An unidentified xiphidio-type cercaria, previously thought inconsequential to catfish health, was found to be released from marsh rams-horn snails (Planorbella trivolvis) inhabiting ponds on a commercial catfish operation in the Mississippi Delta. A preliminary challenge of cohabiting channel catfish ( Ictalurus punctatus ) with snails actively shedding the unidentified cercariae resulted in death of some fish. A second cohabitation trial yielded similar results, as did a third challenge of 250 cercariae/fish. Histopathology revealed developing metacercariae concentrated in the cranial region, especially within the branchial chamber, with several metacercariae at the base of the branchial arches within, or adjacent to, blood vessels, possibly the proximate cause of death. Genetic sequence analysis of the 18S small subunit ribosomal DNA (ssDNA), 28S large subunit rDNA (lsDNA), and cytochrome oxidase (Cox1) genes all matched the cercariae to Drepanocephalus spathans (Digenea: Echinostomatidae), a parasite of the double-crested cormorant (Phalacrocorax auritus), a piscivorous bird endemic on most catfish farms. This is the first commentary regarding pathology of D. spathans in juvenile channel catfish as well as the first report of the marsh rams-horn snail as an intermediate host in the D. spathans life cycle. The data presented here suggest this parasite could have limiting effects on catfish production, further supporting the need for adequate snail control programs to reduce trematode prevalence on commercial catfish operations.

What Are You or Who Are You? The Emergence of Social Interaction between Dog and an Unidentified Moving Object (UMO)

PubMed Central

Gergely, Anna; Petró, Eszter; Topál, József; Miklósi, Ádám

2013-01-01

Robots offer new possibilities for investigating animal social behaviour. This method enhances controllability and reproducibility of experimental techniques, and it allows also the experimental separation of the effects of bodily appearance (embodiment) and behaviour. In the present study we examined dogs’ interactive behaviour in a problem solving task (in which the dog has no access to the food) with three different social partners, two of which were robots and the third a human behaving in a robot-like manner. The Mechanical UMO (Unidentified Moving Object) and the Mechanical Human differed only in their embodiment, but showed similar behaviour toward the dog. In contrast, the Social UMO was interactive, showed contingent responsiveness and goal-directed behaviour and moved along varied routes. The dogs showed shorter looking and touching duration, but increased gaze alternation toward the Mechanical Human than to the Mechanical UMO. This suggests that dogs’ interactive behaviour may have been affected by previous experience with typical humans. We found that dogs also looked longer and showed more gaze alternations between the food and the Social UMO compared to the Mechanical UMO. These results suggest that dogs form expectations about an unfamiliar moving object within a short period of time and they recognise some social aspects of UMOs’ behaviour. This is the first evidence that interactive behaviour of a robot is important for evoking dogs’ social responsiveness. PMID:24015272

DNA barcoding reveals high diversity of deep-sea octocorals on Hawaiian seamounts

NASA Astrophysics Data System (ADS)

Baco-Taylor, A.; Morgan, N.; LaBelle, B.; Figueroa, D.; Ormos, A.; Cairns, S.; Driskell, A.

2016-02-01

Globally, studies of deep-sea octocoral distribution and diversity have been hampered by a lack of keys and a plethora of unidentified specimens. Even in areas where intensive morphological work has been done, as many as half of the specimens remain unidentified to species or even genus. Recently, a suite of genetic markers have been identified as barcoding proxies for octocorals. Here, we make one of the first attempts at broad-scale application of 3 of these markers, to recent and museum collections of octocorals of approximately 1000 specimens from the Hawaiian Archipelago, to gain a better understanding of the diversity and distribution of deep-sea octocorals there. Sequence results for all 3 markers show a greater number of haplotypes than morphological species. Each of these markers as taken alone has been shown to underestimate species richness. Extrapolating from this we show that morphological work to date on these specimens underestimates species richness by 30-40%, suggesting the diversity of octocorals in the Hawaiian Archipelago is substantially greater than previously thought. The large percentage of haplotypes represented by single individuals suggests that the full diversity of deep-sea octocorals in Hawaii remains drastically undersampled. This work also shows that species ranges based on current species designations are overestimated, with multiple smaller-range haplotypes for given morphological operational taxonomic units. We evaluate these results to assess the usefulness of application of these markers to understanding deep-sea coral distributions in the broader Pacific and beyond.

[Spectral diversity among the members of the family of Green Fluorescent Protein in hydroid jellyfish (Cnidaria, Hydrozoa)].

PubMed

Ianushevich, Iu G; Shagin, D A; Fradkov, A F; Shakhbazov, K S; Barsova, E V; Gurskaia, N G; Labas, Iu A; Matts, M V; Luk'ianov, k A; Lul'ianov, S A

2005-01-01

The cDNAs encoding the genes of new proteins homologous to the well-known Green Fluorescent Protein (GFP) from the hydroid jellyfish Aequorea victoria were cloned. Two green fluorescent proteins from one un-identified anthojellyfish, a yellow fluorescent protein from Phialidium sp., and a nonfluorescent chromoprotein from another unidentified anthojellyfish were characterized. Thus, a broad diversity of GFP-like proteins among the organisms of the class Hydrozoa in both spectral properties and primary structure was shown.

[The coordination of the forensic medical service with the medical criminology subdivisions of internal affairs organs in the personal identification of unidentified corpses].

PubMed

Pashinian, G A; Tuchik, E S

1997-01-01

In order to improve the cooperation between medical criminology departments of the organs of home affairs and forensic medical service in personality identification of unidentified corpses, the authors propose amendments to the routine procedure regulated by documents of the Ministry of Home Affairs of the Russian Federation, for these documents are in need of serious correction and revision, so that they conform to the judicial legislation and other documents.

Isolation of an unidentified pink-pigmented bacterium in a clinical specimen.

PubMed Central

Odugbemi, T; Nwofor, C; Joiner, K T

1988-01-01

An unidentified pink-pigmented bacterium isolated from a clinical specimen is reported. The organism was oxidase, urease, and catalase positive; it grew on Thayer-Martin and MacConkey media. The isolate is possibly similar to an unnamed taxon (G.L. Gilardi and Y.C. Faur, J. Clin. Microbiol. 20:626-629, 1984); however, it had unique characteristics of nonmotility with no flagellum detectable and was a gram-negative coccoid with a few rods in pairs and negative for starch hydrolysis. PMID:3384903

Isolation of an unidentified pink-pigmented bacterium in a clinical specimen.

PubMed

Odugbemi, T; Nwofor, C; Joiner, K T

1988-05-01

An unidentified pink-pigmented bacterium isolated from a clinical specimen is reported. The organism was oxidase, urease, and catalase positive; it grew on Thayer-Martin and MacConkey media. The isolate is possibly similar to an unnamed taxon (G.L. Gilardi and Y.C. Faur, J. Clin. Microbiol. 20:626-629, 1984); however, it had unique characteristics of nonmotility with no flagellum detectable and was a gram-negative coccoid with a few rods in pairs and negative for starch hydrolysis.

Integrated magnetic, gravity, and GPR surveys to locate the probable source of hydrocarbon contamination in Sharm El-Sheikh area, south Sinai, Egypt

NASA Astrophysics Data System (ADS)

Morsy, Mona; Rashed, Mohamed

2013-01-01

Sharm El-Sheikh waters were suddenly hit by hydrocarbon spills which created a serious threat to the prosperous tourism industry in and around the city. Analysis of soil samples, water samples, and seabed samples collected in and around the contaminated bay area showed anomalous levels of hydrocarbons. An integrated geophysical investigation, using magnetic, gravity, and ground penetrating radar geophysical tools, was conducted in the headland overlooking the contaminated bay in order to delineate the possible subsurface source of contamination. The results of the geophysical investigations revealed three underground manmade reinforced concrete tanks and a complicated network of buried steel pipes in addition to other unidentified buried objects. The depths and dimensions of the discovered objects were determined. Geophysical investigations also revealed the presence of a north-south oblique slip fault running through the eastern part of the studied area. Excavations, conducted later on, confirmed the presence of one of the tanks delineated by the geophysical surveys.

Gamma-ray Astrophysics with AGILE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Longo, Francesco; Tavani, M.; Barbiellini, G.

2007-07-12

AGILE will explore the gamma-ray Universe with a very innovative instrument combining for the first time a gamma-ray imager and a hard X-ray imager. AGILE will be operational in spring 2007 and it will provide crucial data for the study of Active Galactic Nuclei, Gamma-Ray Bursts, unidentified gamma-ray sources. Galactic compact objects, supernova remnants, TeV sources, and fundamental physics by microsecond timing. The AGILE instrument is designed to simultaneously detect and image photons in the 30 MeV - 50 GeV and 15 - 45 keV energy bands with excellent imaging and timing capabilities, and a large field of view coveringmore » {approx} 1/5 of the entire sky at energies above 30 MeV. A CsI calorimeter is capable of GRB triggering in the energy band 0.3-50 MeV AGILE is now (March 2007) undergoing launcher integration and testing. The PLSV launch is planned in spring 2007. AGILE is then foreseen to be fully operational during the summer of 2007.« less

Efficient generation of low-energy folded states of a model protein

NASA Astrophysics Data System (ADS)

Gordon, Heather L.; Kwan, Wai Kei; Gong, Chunhang; Larrass, Stefan; Rothstein, Stuart M.

2003-01-01

A number of short simulated annealing runs are performed on a highly-frustrated 46-"residue" off-lattice model protein. We perform, in an iterative fashion, a principal component analysis of the 946 nonbonded interbead distances, followed by two varieties of cluster analyses: hierarchical and k-means clustering. We identify several distinct sets of conformations with reasonably consistent cluster membership. Nonbonded distance constraints are derived for each cluster and are employed within a distance geometry approach to generate many new conformations, previously unidentified by the simulated annealing experiments. Subsequent analyses suggest that these new conformations are members of the parent clusters from which they were generated. Furthermore, several novel, previously unobserved structures with low energy were uncovered, augmenting the ensemble of simulated annealing results, and providing a complete distribution of low-energy states. The computational cost of this approach to generating low-energy conformations is small when compared to the expense of further Monte Carlo simulated annealing runs.

Thermal evolution of the metastable r8 and bc8 polymorphs of silicon

DOE PAGES

Haberl, Bianca; Guthrie, Malcolm; Sinogeikin, Stanislav V.; ...

2015-01-28

The kinetics of two metastable polymorphs of silicon under thermal annealing was investigated. These phases with body-centered cubic bc8 and rhombohedral r8 structures can be formed upon pressure release from metallic silicon.We study these metastable polymorphs were formed by two different methods, via point loading and in a diamond anvil cell (DAC). Upon thermal annealing different transition pathways were detected. In the point loading case, the previously reported Si-XIII formed and was confirmed as a new phase with an as-yet-unidentified structure. In the DAC case, bc8-Si transformed to the hexagonal-diamond structure at elevated pressure, consistent with previous studies at ambientmore » pressure. In contrast, r8-Si transformed directly to diamond-cubic Si at a temperature of 255⁰C. In conclusion, these data were used to construct diagrams of the metastability regimes of the polymorphs formed in a DAC and may prove useful for potential technological applications of these metastable polymorphs.« less

Thermal evolution of the metastable r8 and bc8 polymorphs of silicon

DOE Office of Scientific and Technical Information (OSTI.GOV)

Haberl, Bianca; Guthrie, Malcolm; Sinogeikin, Stanislav V.

The kinetics of two metastable polymorphs of silicon under thermal annealing was investigated. These phases with body-centered cubic bc8 and rhombohedral r8 structures can be formed upon pressure release from metallic silicon.We study these metastable polymorphs were formed by two different methods, via point loading and in a diamond anvil cell (DAC). Upon thermal annealing different transition pathways were detected. In the point loading case, the previously reported Si-XIII formed and was confirmed as a new phase with an as-yet-unidentified structure. In the DAC case, bc8-Si transformed to the hexagonal-diamond structure at elevated pressure, consistent with previous studies at ambientmore » pressure. In contrast, r8-Si transformed directly to diamond-cubic Si at a temperature of 255⁰C. In conclusion, these data were used to construct diagrams of the metastability regimes of the polymorphs formed in a DAC and may prove useful for potential technological applications of these metastable polymorphs.« less

Treatment preferences of patients and physicians: influences of summary data when framing effects are controlled.

PubMed

Mazur, D J; Hickam, D H

1990-01-01

The presentation of efficacy data influences preferences for treatment options. To determine how the amount of data provided to patients influenced patient decision making after framing and labeling effects were controlled, patients and physicians were presented results of two alternative treatments for an unidentified serious medical condition, derived from summary data of lung cancer treatment after surgery (better long-term survival) or radiation therapy (better short-term survival). These data are the same as used in previous studies of framing. When summary data at one month, one year, and five years were presented in terms of both survival and mortality, patients preferred the option that would be expected if only mortality data had been presented. When more detailed data were presented (data at six discrete time points), both patients and physicians preferred the option associated with a survival frame influence in previous studies. Thus, once framing influences are controlled, preference changes can be influenced by another attribute of summary data: the amount of data presented.

Numerous uncharacterized and highly divergent microbes which colonize humans are revealed by circulating cell-free DNA

PubMed Central

Camunas-Soler, Joan; Kertesz, Michael; De Vlaminck, Iwijn; Koh, Winston; Pan, Wenying; Martin, Lance; Neff, Norma F.; Okamoto, Jennifer; Wong, Ronald J.; Kharbanda, Sandhya; El-Sayed, Yasser; Blumenfeld, Yair; Stevenson, David K.; Shaw, Gary M.; Wolfe, Nathan D.; Quake, Stephen R.

2017-01-01

Blood circulates throughout the human body and contains molecules drawn from virtually every tissue, including the microbes and viruses which colonize the body. Through massive shotgun sequencing of circulating cell-free DNA from the blood, we identified hundreds of new bacteria and viruses which represent previously unidentified members of the human microbiome. Analyzing cumulative sequence data from 1,351 blood samples collected from 188 patients enabled us to assemble 7,190 contiguous regions (contigs) larger than 1 kbp, of which 3,761 are novel with little or no sequence homology in any existing databases. The vast majority of these novel contigs possess coding sequences, and we have validated their existence both by finding their presence in independent experiments and by performing direct PCR amplification. When their nearest neighbors are located in the tree of life, many of the organisms represent entirely novel taxa, showing that microbial diversity within the human body is substantially broader than previously appreciated. PMID:28830999

Aspergillus fumigatus mitochondrial electron transport chain mediates oxidative stress homeostasis, hypoxia responses and fungal pathogenesis.

PubMed

Grahl, Nora; Dinamarco, Taisa Magnani; Willger, Sven D; Goldman, Gustavo H; Cramer, Robert A

2012-04-01

We previously observed that hypoxia is an important component of host microenvironments during pulmonary fungal infections. However, mechanisms of fungal growth in these in vivo hypoxic conditions are poorly understood. Here, we report that mitochondrial respiration is active in hypoxia (1% oxygen) and critical for fungal pathogenesis. We generated Aspergillus fumigatus alternative oxidase (aoxA) and cytochrome C (cycA) null mutants and assessed their ability to tolerate hypoxia, macrophage killing and virulence. In contrast to ΔaoxA, ΔcycA was found to be significantly impaired in conidia germination, growth in normoxia and hypoxia, and displayed attenuated virulence. Intriguingly, loss of cycA results in increased levels of AoxA activity, which results in increased resistance to oxidative stress, macrophage killing and long-term persistence in murine lungs. Thus, our results demonstrate a previously unidentified role for fungal mitochondrial respiration in the pathogenesis of aspergillosis, and lay the foundation for future research into its role in hypoxia signalling and adaptation. © 2012 Blackwell Publishing Ltd.

Overview of environmental and hydrogeologic conditions at Fort Yukon, Alaska

USGS Publications Warehouse

Nakanishi, Allan S.; Dorava, Joseph M.

1994-01-01

The village of Fort Yukon along the Yukon River in east-central Alaska has long cold winters and short summers. The Federal Aviation Administration operates and supports some airport facilities in Fort Yukon and is evaluating the severity of environmental contamination and options for remediation of such contamination at their facilites. Fort Yukon is located on the flood plain of the Yukon River and obtains its drinking water from a shallow aquifer located in the thick alluvium underlying the village. Surface spills and disposal of hazardous materials combined with annual flooding of the Yukon River may affect the quality of the ground water. Alternative drinking-water sources are available from local surface-water bodies or from presently unidentified confined aquifers.

The Fermi Gamma-Ray Space Telescope discovers the pulsar in the young galactic supernova remnant CTA 1.

PubMed

Abdo, A A; Ackermann, M; Atwood, W B; Baldini, L; Ballet, J; Barbiellini, G; Baring, M G; Bastieri, D; Baughman, B M; Bechtol, K; Bellazzini, R; Berenji, B; Blandford, R D; Bloom, E D; Bogaert, G; Bonamente, E; Borgland, A W; Bregeon, J; Brez, A; Brigida, M; Bruel, P; Burnett, T H; Caliandro, G A; Cameron, R A; Caraveo, P A; Carlson, P; Casandjian, J M; Cecchi, C; Charles, E; Chekhtman, A; Cheung, C C; Chiang, J; Ciprini, S; Claus, R; Cohen-Tanugi, J; Cominsky, L R; Conrad, J; Cutini, S; Davis, D S; Dermer, C D; de Angelis, A; de Palma, F; Digel, S W; Dormody, M; do Couto E Silva, E; Drell, P S; Dubois, R; Dumora, D; Edmonds, Y; Farnier, C; Focke, W B; Fukazawa, Y; Funk, S; Fusco, P; Gargano, F; Gasparrini, D; Gehrels, N; Germani, S; Giebels, B; Giglietto, N; Giordano, F; Glanzman, T; Godfrey, G; Grenier, I A; Grondin, M-H; Grove, J E; Guillemot, L; Guiriec, S; Harding, A K; Hartman, R C; Hays, E; Hughes, R E; Jóhannesson, G; Johnson, A S; Johnson, R P; Johnson, T J; Johnson, W N; Kamae, T; Kanai, Y; Kanbach, G; Katagiri, H; Kawai, N; Kerr, M; Kishishita, T; Kiziltan, B; Knödlseder, J; Kocian, M L; Komin, N; Kuehn, F; Kuss, M; Latronico, L; Lemoine-Goumard, M; Longo, F; Lonjou, V; Loparco, F; Lott, B; Lovellette, M N; Lubrano, P; Makeev, A; Marelli, M; Mazziotta, M N; McEnery, J E; McGlynn, S; Meurer, C; Michelson, P F; Mineo, T; Mitthumsiri, W; Mizuno, T; Moiseev, A A; Monte, C; Monzani, M E; Morselli, A; Moskalenko, I V; Murgia, S; Nakamori, T; Nolan, P L; Nuss, E; Ohno, M; Ohsugi, T; Okumura, A; Omodei, N; Orlando, E; Ormes, J F; Ozaki, M; Paneque, D; Panetta, J H; Parent, D; Pelassa, V; Pepe, M; Pesce-Rollins, M; Piano, G; Pieri, L; Piron, F; Porter, T A; Rainò, S; Rando, R; Ray, P S; Razzano, M; Reimer, A; Reimer, O; Reposeur, T; Ritz, S; Rochester, L S; Rodriguez, A Y; Romani, R W; Roth, M; Ryde, F; Sadrozinski, H F-W; Sanchez, D; Sander, A; Parkinson, P M Saz; Schalk, T L; Sellerholm, A; Sgrò, C; Siskind, E J; Smith, D A; Smith, P D; Spandre, G; Spinelli, P; Starck, J-L; Strickman, M S; Suson, D J; Tajima, H; Takahashi, H; Takahashi, T; Tanaka, T; Thayer, J B; Thayer, J G; Thompson, D J; Thorsett, S E; Tibaldo, L; Torres, D F; Tosti, G; Tramacere, A; Usher, T L; Van Etten, A; Vilchez, N; Vitale, V; Wang, P; Watters, K; Winer, B L; Wood, K S; Yasuda, H; Ylinen, T; Ziegler, M

2008-11-21

Energetic young pulsars and expanding blast waves [supernova remnants (SNRs)] are the most visible remains after massive stars, ending their lives, explode in core-collapse supernovae. The Fermi Gamma-Ray Space Telescope has unveiled a radio quiet pulsar located near the center of the compact synchrotron nebula inside the supernova remnant CTA 1. The pulsar, discovered through its gamma-ray pulsations, has a period of 316.86 milliseconds and a period derivative of 3.614 x 10(-13) seconds per second. Its characteristic age of 10(4) years is comparable to that estimated for the SNR. We speculate that most unidentified Galactic gamma-ray sources associated with star-forming regions and SNRs are such young pulsars.

Design of experiments for identification of complex biochemical systems with applications to mitochondrial bioenergetics.

PubMed

Vinnakota, Kalyan C; Beard, Daniel A; Dash, Ranjan K

2009-01-01

Identification of a complex biochemical system model requires appropriate experimental data. Models constructed on the basis of data from the literature often contain parameters that are not identifiable with high sensitivity and therefore require additional experimental data to identify those parameters. Here we report the application of a local sensitivity analysis to design experiments that will improve the identifiability of previously unidentifiable model parameters in a model of mitochondrial oxidative phosphorylation and tricaboxylic acid cycle. Experiments were designed based on measurable biochemical reactants in a dilute suspension of purified cardiac mitochondria with experimentally feasible perturbations to this system. Experimental perturbations and variables yielding the most number of parameters above a 5% sensitivity level are presented and discussed.

Modeling the unidentified infrared emission with combinations of polycyclic aromatic hydrocarbons

NASA Technical Reports Server (NTRS)

Allamandola, L. J.; Hudgins, D. M.; Sandford, S. A.

1999-01-01

The infrared emission band spectrum associated with many different interstellar objects can be modeled successfully by using combined laboratory spectra of neutral and positively charged polycyclic aromatic hydrocarbons (PAHs). These model spectra, shown here for the first time, alleviate the principal spectroscopic criticisms previously leveled at the PAH hypothesis and demonstrate that mixtures of free molecular PAHs can indeed account for the overall appearance of the widespread interstellar infrared emission spectrum. Furthermore, these models give us insight into the structures, stabilities, abundances, and ionization balance of the interstellar PAH population. These, in turn, reflect conditions in the emission zones and shed light on the microscopic processes involved in the carbon nucleation, growth, and evolution in circumstellar shells and the interstellar medium.

Implications of the measured angular anisotropy at the hidden order transition of URu2Si2

NASA Astrophysics Data System (ADS)

Chandra, P.; Coleman, P.; Flint, R.; Trinh, J.; Ramirez, A. P.

2018-05-01

The heavy fermion compound URu2Si2 continues to attract great interest due to the long-unidentified nature of the hidden order that develops below 17.5 K. Here we discuss the implications of an angular survey of the linear and nonlinear susceptibility of URu2Si2 in the vicinity of the hidden order transition [1]. While the anisotropic nature of spin fluctuations and low-temperature quasiparticles was previously established, our recent results suggest that the order parameter itself has intrinsic Ising anisotropy, and that moreover this anisotropy extends far above the hidden order transition. Consistency checks and subsequent questions for future experimental and theoretical studies of hidden order are discussed.

Evaluation of Esophageal Motor Function With High-resolution Manometry

PubMed Central

2013-01-01

For several decades esophageal manometry has been the test of choice to evaluate disorders of esophageal motor function. The recent introduction of high-resolution manometry for the study of esophageal motor function simplified performance of esophageal manometry, and revealed previously unidentified patterns of normal and abnormal esophageal motor function. Presentation of pressure data as color contour plots or esophageal pressure topography led to the development of new tools for analyzing and classifying esophageal motor patterns. The current standard and still developing approach to do this is the Chicago classification. While this methodical approach is improving our diagnosis of esophageal motor disorders, it currently does not address all motor abnormalities. We will explore the Chicago classification and disorders that it does not address. PMID:23875094

A Serendipitous Pulsar Discovery in a Search for a Companion to a Low-mass White Dwarf

NASA Astrophysics Data System (ADS)

Andrews, Jeff J.; Agüeros, Marcel A.; Camilo, Fernando; Kilic, Mukremin; Gianninas, Alex; Brown, Warren; Heinke, Craig

2018-06-01

We report the discovery of a previously unidentified pulsar as part of a radio campaign to identify neutron star companions to low-mass white dwarfs (LMWDs) using the Robert C.\\ Byrd Green Bank Telescope (GBT). PSR J0802-0955, which is coincident with the position of a WD with a mass of 0.2 solar masses, has a pulse period of 571 ms. Because of its relatively long pulse period, the lack of radial velocity (RV) variations in the radio data, and GBT's large beam size at the observing frequency of 340 MHz, we conclude that PSR J0802-0955 is unassociated with the LMWD at roughly the same position and distance.

Gamma-Ray Emission from the Broad-Line Radio Galaxy 3C 111

NASA Technical Reports Server (NTRS)

Hartman, Robert C.; Kadler, M.; Tueller, Jack

2008-01-01

The broad-line radio galaxy 3C 111 has been suggested as the counterpart of the y-ray source 3EG J0416+3650. While 3C 111 meets most of the criteria for a high-probability identification, like a bright flat-spectrum radio core and a blazar-like broadband SED, in the Third EGRET Catalog, the large positional offset of about 1.5' put 3C 111 outside the 99% probability region for 3EG J0416+3650, making this association questionable. We present a re-analysis of all available archival data for 3C 111 from the EGRET archives, resulting in detection of variable hard-spectrum high-energy gamma-ray emission above 1000 MeV from a position close to the nominal position of 3C 111, in three separate viewing periods (VPs), at a 3sigma level in each. A second variable hard-spectrum source is present nearby. At >100 MeV, one variable soft-spectrum source seems to account for most of the EGRET-detected emission of 3EG J0416+3650. A follow-up Swift UVOT/XRT observation reveals one moderately bright X-ray source in the error box of 3EG J0416+3650, but because of the large EGRET position uncertainty, it is not certain that the X-ray and gamma-ray sources are associated. Another Swift observation near the second (unidentified) hard gamma-ray source detected no X-ray source nearby.

Spectral Archives: Extending Spectral Libraries to Analyze both Identified and Unidentified Spectra

PubMed Central

Frank, Ari M.; Monroe, Matthew E.; Shah, Anuj R.; Carver, Jeremy J.; Bandeira, Nuno F.; Moore, Ronald J.; Anderson, Gordon A.; Smith, Richard D.; Pevzner, Pavel A.

2011-01-01

MS/MS experiments generate multiple, nearly identical spectra of the same peptide in various laboratories, but proteomics researchers typically do not leverage the unidentified spectra produced in other labs to decode spectra generated in their own labs. We propose a spectral archives approach that clusters MS/MS datasets, representing similar spectra by a single consensus spectrum. Spectral archives extend spectral libraries by analyzing both identified and unidentified spectra in the same way and maintaining information about spectra of peptides shared across species and conditions. Thus archives offer both traditional library spectrum similarity-based search capabilities along with novel ways to analyze the data. By developing a clustering tool, MS-Cluster, we generated a spectral archive from ~1.18 billion spectra that greatly exceeds the size of existing spectral repositories. We advocate that publicly available data should be organized into spectral archives, rather than be analyzed as disparate datasets, as is mostly the case today. PMID:21572408

Dynamical compensation and structural identifiability of biological models: Analysis, implications, and reconciliation

PubMed Central

2017-01-01

The concept of dynamical compensation has been recently introduced to describe the ability of a biological system to keep its output dynamics unchanged in the face of varying parameters. However, the original definition of dynamical compensation amounts to lack of structural identifiability. This is relevant if model parameters need to be estimated, as is often the case in biological modelling. Care should we taken when using an unidentifiable model to extract biological insight: the estimated values of structurally unidentifiable parameters are meaningless, and model predictions about unmeasured state variables can be wrong. Taking this into account, we explore alternative definitions of dynamical compensation that do not necessarily imply structural unidentifiability. Accordingly, we show different ways in which a model can be made identifiable while exhibiting dynamical compensation. Our analyses enable the use of the new concept of dynamical compensation in the context of parameter identification, and reconcile it with the desirable property of structural identifiability. PMID:29186132

Spirosoma metallum sp. nov., isolated from an automobile air conditioning system.

PubMed

Kim, Dong-Uk; Lee, Hyosun; Lee, Suyeon; Park, Sooyeon; Yoon, Jung-Hoon; Park, So Yoon; Ka, Jong-Ok

2018-01-01

A Gram-stain-negative and yellow-pigmented bacterial strain, designated TX0653 T , was isolated from an automobile evaporator core collected in Korea. The cells were aerobic and rod-shaped. The strain grew at 10-28 °C (optimum, 25 °C), at pH 6.0-7.5 (optimum, 6.5), and in the presence of 0-1% (w/v) NaCl (optimum, 0%). Phylogenetically, the strain was related to members of the genus Spirosoma (95.1-90.8% 16S rRNA sequence similarity) and distantly related to Spirosoma pulveris JSH5-14 T (95.1%), Spirosoma fluviale MSd3 T (95.0%), Spirosoma endophyticum DSM 26130 T (94.8%), and Spirosoma linguale DSM 74 T (94.6%). The major fatty acids of the strain were summed feature 3 (C 16:1 ω6c and/or C 16:1 ω7c), C 16:1 ω5c, iso-C 15:0 , iso-C 17:0 3-OH, and C 16:0 . MK-7 was identified as the predominant menaquinone. The polar lipids profile indicated the presence of one phosphatidylethanolamine, one unidentified aminolipid, one unidentified aminophospholipid, two unidentified phospholipids, and three unidentified lipids. On the basis of the phenotypic, genotypic, and chemotaxonomic characteristics, strain TX0653 T represents a novel species in the genus Spirosoma, for which the name Spirosoma metallum sp. nov. (= KACC 19278 T  = NBRC 112495 T ) is proposed.

Amplicon-Based Pyrosequencing Reveals High Diversity of Protistan Parasites in Ships' Ballast Water: Implications for Biogeography and Infectious Diseases.

PubMed

Pagenkopp Lohan, K M; Fleischer, R C; Carney, K J; Holzer, K K; Ruiz, G M

2016-04-01

Ships' ballast water (BW) commonly moves macroorganisms and microorganisms across the world's oceans and along coasts; however, the majority of these microbial transfers have gone undetected. We applied high-throughput sequencing methods to identify microbial eukaryotes, specifically emphasizing the protistan parasites, in ships' BW collected from vessels calling to the Chesapeake Bay (Virginia and Maryland, USA) from European and Eastern Canadian ports. We utilized tagged-amplicon 454 pyrosequencing with two general primer sets, amplifying either the V4 or V9 domain of the small subunit (SSU) of the ribosomal RNA (rRNA) gene complex, from total DNA extracted from water samples collected from the ballast tanks of bulk cargo vessels. We detected a diverse group of protistan taxa, with some known to contain important parasites in marine systems, including Apicomplexa (unidentified apicomplexans, unidentified gregarines, Cryptosporidium spp.), Dinophyta (Blastodinium spp., Euduboscquella sp., unidentified syndinids, Karlodinium spp., Syndinium spp.), Perkinsea (Parvilucifera sp.), Opisthokonta (Ichthyosporea sp., Pseudoperkinsidae, unidentified ichthyosporeans), and Stramenopiles (Labyrinthulomycetes). Further characterization of groups with parasitic taxa, consisting of phylogenetic analyses for four taxa (Cryptosporidium spp., Parvilucifera spp., Labyrinthulomycetes, and Ichthyosporea), revealed that sequences were obtained from both known and novel lineages. This study demonstrates that high-throughput sequencing is a viable and sensitive method for detecting parasitic protists when present and transported in the ballast water of ships. These data also underscore the potential importance of human-aided dispersal in the biogeography of these microbes and emerging diseases in the world's oceans.

Five Years of the Fermi LAT Flare Advocate

NASA Astrophysics Data System (ADS)

Carpenter, Bryce; Ojha, R.; Gasparrini, D.; Ciprini, S.; Fermi LAT Collaboration; Fermi LAT Flare Advocates

2014-01-01

Since the launch of the Fermi satellite, the Fermi Large Area Telescope (LAT) team has run a program that provides a daily review of the the gamma-ray sky as soon as Fermi LAT data becomes available. The Flare Advocate/Gamma-ray Sky Watcher (FA-GSW) program allows a rapid analysis of the Automatic Science Processing (ASP) products and triggers dedicated followup analyses by several LAT science groups such as those studying Galactic transients, extragalactic sources and new gamma-ray sources. Significant gamma-ray detections also trigger rapid communications to the entire astrophysical community via astronomical telegrams and gamma-ray coordination network notices. The FA-GSW program plays a key role in maximizing the science return from Fermi by increasing the rate of multi-frequency observations of sources in an active gamma-ray state. In the past ~5 years blazar flaring activity of varying strength and duty cycles, gravitationally lensed blazars, flares from Galactic sources (like Nova Delphini and the Crab Nebula), unidentified transients near and off the Galactic plane, and emission from the quiet and flaring Sun, represent the range of detections made. Flare Advocates have published about 250 Astronomical Telegrams and they publish a weekly blog. Timely, extensive multi-frequency campaigns have been organized to follow-up on these phenomena leading to some of Fermi’s most interesting results.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carmichael, Joshua D.; Hartse, Hans

Colocated explosive sources often produce correlated seismic waveforms. Multichannel correlation detectors identify these signals by scanning template waveforms recorded from known reference events against "target" data to find similar waveforms. This screening problem is challenged at thresholds required to monitor smaller explosions, often because non-target signals falsely trigger such detectors. Therefore, it is generally unclear what thresholds will reliably identify a target explosion while screening non-target background seismicity. Here, we estimate threshold magnitudes for hypothetical explosions located at the North Korean nuclear test site over six months of 2010, by processing International Monitoring System (IMS) array data with a multichannelmore » waveform correlation detector. Our method (1) accounts for low amplitude background seismicity that falsely triggers correlation detectors but is unidentifiable with conventional power beams, (2) adapts to diurnally variable noise levels and (3) uses source-receiver reciprocity concepts to estimate thresholds for explosions spatially separated from the template source. Furthermore, we find that underground explosions with body wave magnitudes m b = 1.66 are detectable at the IMS array USRK with probability 0.99, when using template waveforms consisting only of P -waves, without false alarms. We conservatively find that these thresholds also increase by up to a magnitude unit for sources located 4 km or more from the Feb.12, 2013 announced nuclear test.« less

The Advanced Gamma-ray Imaging System (AGIS)

NASA Astrophysics Data System (ADS)

Buckley, James

2008-04-01

We describe a concept for a ˜km^2 ground-based gamma-ray experiment (AGIS) comprised of an array of ˜100 imaging atmospheric Cherenkov telescopes achieving a sensitivity an order of magnitude better than the current generation of space or ground-based instruments in the energy range of 40 GeV to ˜100 TeV. We present the scientific drivers for AGIS including the prospects for contributions to understanding extragalactic sources such as nearby galaxies, active galaxies, galaxy clusters and GRB; galactic sources such as X-ray binaries, supernova remnants, and pulsar wind nebulae; as well as probes of fundamental physics including indirectly detecting dark matter and probing TeV-scale physics. With the current generation of atmospheric Cherenkov telescope arrays, TeV astronomy has become well established, with the number TeV gamma-ray sources now nearing 100, including many unidentified and serendipitous sources. Improvements in the instantaneous field of view, angular resolution, effective area and energy resolution of AGIS are certain to provide great scientific returns in high energy astrophysics as well as opening up new discovery space. Here we present an overview of the ongoing design studies for AGIS including the optimization of array parameters as well as an overview of the technical drivers for the observatory.

An unidentified TeV source in the vicinity of Cygnus OB2

NASA Astrophysics Data System (ADS)

Aharonian, F.; Akhperjanian, A.; Beilicke, M.; Bernlöhr, K.; Börst, H.; Bojahr, H.; Bolz, O.; Coarasa, T.; Contreras, J.; Cortina, J.; Denninghoff, S.; Fonseca, V.; Girma, M.; Götting, N.; Heinzelmann, G.; Hermann, G.; Heusler, A.; Hofmann, W.; Horns, D.; Jung, I.; Kankanyan, R.; Kestel, M.; Kettler, J.; Kohnle, A.; Konopelko, A.; Kornmeyer, H.; Kranich, D.; Krawczynski, H.; Lampeitl, H.; Lopez, M.; Lorenz, E.; Lucarelli, F.; Magnussen, N.; Mang, O.; Meyer, H.; Milite, M.; Mirzoyan, R.; Moralejo, A.; Ona, E.; Panter, M.; Plyasheshnikov, A.; Prahl, J.; Pühlhofer, G.; Rauterberg, G.; Reyes, R.; Rhode, W.; Ripken, J.; Röhring, A.; Rowell, G. P.; Sahakian, V.; Samorski, M.; Schilling, M.; Schröder, F.; Siems, M.; Sobzynska, D.; Stamm, W.; Tluczykont, M.; Völk, H. J.; Wiedner, C. A.; Wittek, W.; Uchiyama, Y.; Takahashi, T.; HEGRA Collaboration

2002-10-01

Deep observation ( ~ 113 hrs) of the Cygnus region at TeV energies using the HEGRA stereoscopic system of air Čerenkov telescopes has serendipitously revealed a signal positionally inside the core of the OB association Cygnus OB2, at the edge of the 95% error circle of the EGRET source 3EG J2033+4118, and ~ 0.5o north of Cyg X-3. The source centre of gravity is RA alphaJ2000: 20h 32m 07s+/- 9.2sstat +/-2.2ssys, Dec deltaJ2000: +41o 30' 30''+/- 2.0'stat +/- 0.4'sys. The source is steady, has a post-trial significance of +4.6sigma , indication for extension with radius 5.6' at the ~ 3sigma level, and has a differential power-law flux with hard photon index of -1.9 +/-0.3stat +/-0.3sys. The integral flux above 1 TeV amounts ~ 3% that of the Crab. No counterpart for the TeV source at other wavelengths is presently identified, and its extension would disfavour an exclusive pulsar or AGN origin. If associated with Cygnus OB2, this dense concentration of young, massive stars provides an environment conducive to multi-TeV particle acceleration and likely subsequent interaction with a nearby gas cloud. Alternatively, one could envisage gamma -ray production via a jet-driven termination shock.

Chemical characterization of atmospheric particles and source apportionment in the vicinity of a steelmaking industry.

PubMed

Almeida, S M; Lage, J; Fernández, B; Garcia, S; Reis, M A; Chaves, P C

2015-07-15

The objective of this work was to provide a chemical characterization of atmospheric particles collected in the vicinity of a steelmaking industry and to identify the sources that affect PM10 levels. A total of 94 PM samples were collected in two sampling campaigns that occurred in February and June/July of 2011. PM2.5 and PM2.5-10 were analyzed for a total of 22 elements by Instrumental Neutron Activation Analysis and Particle Induced X-ray Emission. The concentrations of water soluble ions in PM10 were measured by Ion Chromatography and Indophenol-Blue Spectrophotometry. Positive Matrix Factorization receptor model was used to identify sources of particulate matter and to determine their mass contribution to PM10. Seven main groups of sources were identified: marine aerosol identified by Na and Cl (22%), steelmaking and sinter plant represented by As, Cr, Cu, Fe, Ni, Mn, Pb, Sb and Zn (11%), sinter plant stack identified by NH4(+), K and Pb (12%), an unidentified Br source (1.8%), secondary aerosol from coke making and blast furnace (19%), fugitive emissions from the handling of raw material, sinter plant and vehicles dust resuspension identified by Al, Ca, La, Si, Ti and V (14%) and sinter plant and blast furnace associated essentially with Fe and Mn (21%). Copyright © 2015 Elsevier B.V. All rights reserved.

Prospects for Pulsar Studies with the GLAST Large Area Telescope

NASA Technical Reports Server (NTRS)

Harding, Alice K.

2006-01-01

The Large Area Telescope (LAT) on the Gamma-ray Large Area Space Telescope (GLAST) will have unprecedented sensitivity and energy resolution for gamma-rays in the range of 30 MeV to 200 GeV. GLAST is therefore expected to provide major advances in the understanding of high-energy emission from rotation-powered pulsars. As the only presently known galactic GeV source class, pulsars will be one of the most important sources for study with GLAST. The main science goals of the LAT for pulsar studies include an increase in the number of detected radio-loud and radio-quiet gamma ray pulsars, including millisecond pulsars, giving much better statistics for elucidating population characteristics, measurement of the high-energy spectrum and the shape of spectral cutoffs and determining pulse profiles for a variety of pulsars of different age. Further, measurement of phase-resolved spectra and energy dependent pulse profiles of the brighter pulsars should allow detailed tests of magnetospheric particle acceleration and radiation mechanisms, by comparing data with theoretical models that have been developed. Additionally, the LAT will have the sensitivity to allow blind pulsation searches of nearly all unidentified EGRET sources, to possibly uncover more radio-quiet Geminga-like pulsars.

Arsenic speciation in food chains from mid-Atlantic hydrothermal vents

USGS Publications Warehouse

Taylor, Vivien F.; Jackson, Brian P.; Siegfried, Matthew R.; Navratilova, Jana; Francesconi, Kevin A.; Kirshtein, Julie; Voytek, Mary

2012-01-01

Arsenic concentration and speciation were determined in benthic fauna collected from the Mid-Atlantic Ridge hydrothermal vents. The shrimp species, Rimicaris exoculata, the vent chimney-dwelling mussel, Bathymodiolus azoricus, Branchipolynoe seepensis, a commensal worm of B. azoricus and the gastropod Peltospira smaragdina showed variations in As concentration and in stable isotope (δ13C and δ15N) signature between species, suggesting different sources of As uptake. Arsenic speciation showed arsenobetaine to be the dominant species in R. exoculata, whereas in B. azoricus and B. seepensis arsenosugars were most abundant, although arsenobetaine, dimethylarsinate and inorganic arsenic were also observed, along with several unidentified species. Scrape samples from outside the vent chimneys covered with microbial mat, which is a presumed food source for many vent organisms, contained high levels of total As, but organic species were not detectable. The formation of arsenosugars in pelagic environments is typically attributed to marine algae, and the pathway to arsenobetaine is still unknown. The occurrence of arsenosugars and arsenobetaine in these deep sea organisms, where primary production is chemolithoautotrophic and stable isotope analyses indicate food sources are of vent origin, suggests that organic arsenicals can occur in a foodweb without algae or other photosynthetic life.

Arsenic speciation in food chains from mid-Atlantic hydrothermal vents.

PubMed

Taylor, Vivien F; Jackson, Brian P; Siegfried, Matthew; Navratilova, Jana; Francesconi, Kevin A; Kirshtein, Julie; Voytek, Mary

2012-05-04

Arsenic concentration and speciation were determined in benthic fauna collected from the Mid-Atlantic Ridge hydrothermal vents. The shrimp species, Rimicaris exoculata , the vent chimney-dwelling mussel, Bathymodiolus azoricus , Branchipolynoe seepensis , a commensal worm of B. azoricus , and the gastropod Peltospira smaragdina showed variations in As concentration and in stable isotope (δ 13 C and δ 15 N) signature between species, suggesting different sources of As uptake. Arsenic speciation showed arsenobetaine to be the dominant species in R. exoculata , whereas in B. azoricus and B. seepensis arsenosugars were most abundant, although arsenobetaine, dimethylarsinate, and inorganic arsenic were also observed, along with several unidentified species. Scrape samples from outside the vent chimneys, covered with microbial mat, which is a presumed food source for many vent organisms, contained high levels of total As, but organic species were not detectable. The formation of arsenosugars in pelagic environments is typically attributed to marine algae, and the pathway to arsenobetaine is still unknown. The occurrence of arsenosugars and arsenobetaine in these deep sea organisms, where primary production is chemolithoautotrophic and stable isotope analyses indicate food sources are of vent origin, suggests that organic arsenicals can occur in a food web without algae or other photosynthetic life.

Dominant genetics using a yeast genomic library under the control of a strong inducible promoter.

PubMed

Ramer, S W; Elledge, S J; Davis, R W

1992-12-01

In Saccharomyces cerevisiae, numerous genes have been identified by selection from high-copy-number libraries based on "multicopy suppression" or other phenotypic consequences of overexpression. Although fruitful, this approach suffers from two major drawbacks. First, high copy number alone may not permit high-level expression of tightly regulated genes. Conversely, other genes expressed in proportion to dosage cannot be identified if their products are toxic at elevated levels. This work reports construction of a genomic DNA expression library for S. cerevisiae that circumvents both limitations by fusing randomly sheared genomic DNA to the strong, inducible yeast GAL1 promoter, which can be regulated by carbon source. The library obtained contains 5 x 10(7) independent recombinants, representing a breakpoint at every base in the yeast genome. This library was used to examine aberrant gene expression in S. cerevisiae. A screen for dominant activators of yeast mating response identified eight genes that activate the pathway in the absence of exogenous mating pheromone, including one previously unidentified gene. One activator was a truncated STE11 gene lacking approximately 1000 base pairs of amino-terminal coding sequence. In two different clones, the same GAL1 promoter-proximal ATG is in-frame with the coding sequence of STE11, suggesting that internal initiation of translation there results in production of a biologically active, truncated STE11 protein. Thus this library allows isolation based on dominant phenotypes of genes that might have been difficult or impossible to isolate from high-copy-number libraries.

DotMapper: an open source tool for creating interactive disease point maps.

PubMed

Smith, Catherine M; Hayward, Andrew C

2016-04-12

Molecular strain typing of tuberculosis isolates has led to increased understanding of the epidemiological characteristics of the disease and improvements in its control, diagnosis and treatment. However, molecular cluster investigations, which aim to detect previously unidentified cases, remain challenging. Interactive dot mapping is a simple approach which could aid investigations by highlighting cases likely to share epidemiological links. Current tools generally require technical expertise or lack interactivity. We designed a flexible application for producing disease dot maps using Shiny, a web application framework for the statistical software, R. The application displays locations of cases on an interactive map colour coded according to levels of categorical variables such as demographics and risk factors. Cases can be filtered by selecting combinations of these characteristics and by notification date. It can be used to rapidly identify geographic patterns amongst cases in molecular clusters of tuberculosis in space and time; generate hypotheses about disease transmission; identify outliers, and guide targeted control measures. DotMapper is a user-friendly application which enables rapid production of maps displaying locations of cases and their epidemiological characteristics without the need for specialist training in geographic information systems. Enhanced understanding of tuberculosis transmission using this application could facilitate improved detection of cases with epidemiological links and therefore lessen the public health impacts of the disease. It is a flexible system and also has broad international potential application to other investigations using geo-coded health information.

Endogenous sources of variation in language acquisition.

PubMed

Han, Chung-Hye; Musolino, Julien; Lidz, Jeffrey

2016-01-26

A fundamental question in the study of human language acquisition centers around apportioning explanatory force between the experience of the learner and the core knowledge that allows learners to represent that experience. We provide a previously unidentified kind of data identifying children's contribution to language acquisition. We identify one aspect of grammar that varies unpredictably across a population of speakers of what is ostensibly a single language. We further demonstrate that the grammatical knowledge of parents and their children is independent. The combination of unpredictable variation and parent-child independence suggests that the relevant structural feature is supplied by each learner independent of experience with the language. This structural feature is abstract because it controls variation in more than one construction. The particular case we examine is the position of the verb in the clause structure of Korean. Because Korean is a head-final language, evidence for the syntactic position of the verb is both rare and indirect. We show that (i) Korean speakers exhibit substantial variability regarding this aspect of the grammar, (ii) this variability is attested between speakers but not within a speaker, (iii) this variability controls interpretation in two surface constructions, and (iv) it is independent in parents and children. According to our findings, when the exposure language is compatible with multiple grammars, learners acquire a single systematic grammar. Our observation that children and their parents vary independently suggests that the choice of grammar is driven in part by a process operating internal to individual learners.

A rapid NMR-based method for discrimination of strain-specific cell wall teichoic acid structures reveals a third backbone type in Lactobacillus plantarum.

PubMed

Tomita, Satoru; Tanaka, Naoto; Okada, Sanae

2017-03-01

The lactic acid bacterium Lactobacillus plantarum is capable of producing strain-specific structures of cell wall teichoic acid (WTA), an anionic polysaccharide found in the Gram-positive bacterial cell wall. In this study, we established a rapid, NMR-based procedure to discriminate WTA structures in this species, and applied it to 94 strains of L. plantarum. Six previously reported glycerol- and ribitol-containing WTA subtypes were successfully identified from 78 strains, suggesting that these were the dominant structures. However, the level of structural variety differed markedly among bacterial sources, possibly reflecting differences in strain-level microbial diversity. WTAs from eight strains were not identified based on NMR spectra and were classified into three groups. Structural analysis of a partial degradation product of an unidentified WTA produced by strain TUA 1496L revealed that the WTA was 1-O-β-d-glucosylglycerol. Two-dimensional NMR analysis of the polymer structure showed phosphodiester bonds between C-3 and C-6 of the glycerol and glucose residues, suggesting a polymer structure of 3,6΄-linked poly(1-O-β-d-glucosyl-sn-glycerol phosphate). This is the third WTA backbone structure in L. plantarum, following 3,6΄-linked poly(1-O-α-d-glucosyl-sn-glycerol phosphate) and 1,5-linked poly(ribitol phosphate). © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Analysis of a microbial community oxidizing inorganic sulfide and mercaptans.

PubMed

Duncan, K E; Sublette, K L; Rider, P A; Stepp, A; Beitle, R R; Conner, J A; Kolhatkar, R

2001-01-01

Successful treatment of refinery spent-sulfidic caustic (which results from the addition of sodium hydroxide solutions to petroleum refinery waste streams) was achieved in a bioreactor containing an enrichment culture immobilized in organic polymer beads with embedded powdered activated carbon (Bio-Sep). The aerobic enrichment culture had previously been selected using a gas mixture of hydrogen sulfide and methyl mercaptan (MeSH) as the sole carbon and energy sources. The starting cultures for the enrichment consisted of several different Thiobacilli spp. (T. thioparus, T. denitrificans, T. thiooxidans, and T. neopolitanus), as well as activated sludge from a refinery aerobic wastewater treatment system and sludge from an industrial anaerobic digester. Microscopic examination (light and SEM) of the beads and of microbial growth on the walls of the bioreactor revealed a great diversity of microorganisms. Further characterization was undertaken starting with culturable aerobic heterotrophic microorganisms (sequencing of PCR-amplified DNA coding for 16S rRNA, Gram staining) and by PCR amplification of DNA coding for 16S rRNA extracted directly from the cell mass, followed by the separation of the PCR products by DGGE (denaturing gradient gel electrophoresis). Eight prominent bands from the DGGE gel were sequenced and found to be closest to sequences of uncultured Cytophagales (3 bands), Gram-positive cocci (Micrococcineae), alpha proteobacteria (3 bands), and an unidentified beta proteobacterium. Culturable microbes included several genera of fungi as well as various Gram-positive and Gram-negative heterotrophic bacteria not seen in techniques using direct DNA extraction.

Thiosulfate oxidation by Thiomicrospira thermophila: metabolic flexibility in response to ambient geochemistry

PubMed Central

Houghton, J.L.; Foustoukos, D.; Flynn, T.M.; Vetriani, C.; Bradley, A.S.; Fike, D.A.

2017-01-01

Summary Previous studies of the stoichiometry of thiosulfate oxidation by colorless sulfur bacteria have failed to demonstrate mass balance of sulfur, indicating that unidentified oxidized products must be present. Here we present reaction stoichiometry and kinetics under variable pH conditions during the growth of Thiomicrospira thermophila strain EPR85, isolated from diffuse hydrothermal fluids at the East Pacific Rise. At pH 8.0, thiosulfate is stoichiometrically converted to sulfate. At lower pH, the products of thiosulfate oxidation are extracellular elemental sulfur and sulfate. We were able to replicate previous experiments and identify the missing sulfur as tetrathionate, consistent with previous reports of the activity of thiosulfate dehydrogenase. Tetrathionate was formed under slightly acidic conditions. Genomic DNA from T. thermophila strain EPR85 contains genes homologous to those in the Sox pathway (soxAXYZBCDL), as well as rhodanese and thiosulfate dehydrogenase. No other sulfur oxidizing bacteria containing sox(CD)2 genes have been reported to produce extracellular elemental sulfur. If the apparent modified Sox pathway we observe in T. thermophila is present in marine Thiobacillus and Thiomicrospira species, production of extracellular elemental sulfur may be biogeochemically important in marine sulfur cycling. PMID:26914243

Thiosulfate oxidation by Thiomicrospira thermophila: Metabolic flexibility in response to ambient geochemistry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Houghton, J. L.; Foustoukos, D. I.; Flynn, T. M.

Previous studies of the stoichiometry of thiosulfate oxidation by colorless sulfur bacteria have failed to demonstrate mass balance of sulfur, indicating that unidentified oxidized products must be present. Here the reaction stoichiometry and kinetics under variable pH conditions during the growth of Thiomicrospira thermophila strain EPR85, isolated from diffuse hydrothermal fluids at the East Pacific Rise, is presented. At pH 8.0, thiosulfate was stoichiometrically converted to sulfate. At lower pH, the products of thiosulfate oxidation were extracellular elemental sulfur and sulfate. Here, we were able to replicate previous experiments and identify the missing sulfur as tetrathionate, consistent with previous reportsmore » of the activity of thiosulfate dehydrogenase. Tetrathionate was formed under slightly acidic conditions. Genomic DNA from T. thermophila strain EPR85 contains genes homologous to those in the Sox pathway ( soxAXYZBCDL), as well as rhodanese and thiosulfate dehydrogenase. No other sulfur oxidizing bacteria containing sox(CD)2 genes have been reported to produce extracellular elemental sulfur. If the apparent modified Sox pathway we observed in T. thermophila is present in marine Thiobacillus and Thiomicrospira species, production of extracellular elemental sulfur may be biogeochemically important in marine sulfur cycling.« less

Thiosulfate oxidation by Thiomicrospira thermophila: Metabolic flexibility in response to ambient geochemistry

DOE PAGES

Houghton, J. L.; Foustoukos, D. I.; Flynn, T. M.; ...

2016-03-21

Previous studies of the stoichiometry of thiosulfate oxidation by colorless sulfur bacteria have failed to demonstrate mass balance of sulfur, indicating that unidentified oxidized products must be present. Here the reaction stoichiometry and kinetics under variable pH conditions during the growth of Thiomicrospira thermophila strain EPR85, isolated from diffuse hydrothermal fluids at the East Pacific Rise, is presented. At pH 8.0, thiosulfate was stoichiometrically converted to sulfate. At lower pH, the products of thiosulfate oxidation were extracellular elemental sulfur and sulfate. Here, we were able to replicate previous experiments and identify the missing sulfur as tetrathionate, consistent with previous reportsmore » of the activity of thiosulfate dehydrogenase. Tetrathionate was formed under slightly acidic conditions. Genomic DNA from T. thermophila strain EPR85 contains genes homologous to those in the Sox pathway ( soxAXYZBCDL), as well as rhodanese and thiosulfate dehydrogenase. No other sulfur oxidizing bacteria containing sox(CD)2 genes have been reported to produce extracellular elemental sulfur. If the apparent modified Sox pathway we observed in T. thermophila is present in marine Thiobacillus and Thiomicrospira species, production of extracellular elemental sulfur may be biogeochemically important in marine sulfur cycling.« less

Exploration of oxide-based diluted magnetic semiconductors toward transparent spintronics

NASA Astrophysics Data System (ADS)

Fukumura, T.; Yamada, Y.; Toyosaki, H.; Hasegawa, T.; Koinuma, H.; Kawasaki, M.

2004-02-01

A review is given for the recent progress of research in the field of oxide-based diluted magnetic semiconductor (DMS), which was triggered by combinatorial discovery of transparent ferromagnet. The possible advantages of oxide semiconductor as a host of DMS are described in comparison with conventional compound semiconductors. Limits and problems for identifying novel ferromagnetic DMS are described in view of recent reports in this field. Several characterization techniques are proposed in order to eliminate unidentified ferromagnetism of oxide-based DMS unidentified ferromagnetic oxide (UFO). Perspectives and possible devices are also given.

UNIDENTIFIED INFRARED EMISSION BANDS: PAHs or MAONs?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sun Kwok; Yong Zhang, E-mail: sunkwok@hku.hk

2013-07-01

We suggest that the carrier of the unidentified infrared emission (UIE) bands is an amorphous carbonaceous solid with mixed aromatic/aliphatic structures, rather than free-flying polycyclic aromatic hydrocarbon molecules. Through spectral fittings of the astronomical spectra of the UIE bands, we show that a significant amount of the energy is emitted by the aliphatic component, implying that aliphatic groups are an essential part of the chemical structure. Arguments in favor of an amorphous, solid-state structure rather than a gas-phase molecule as a carrier of the UIE are also presented.

The Mysteries of Real Materials

NASA Technical Reports Server (NTRS)

Laub, Bernard

2012-01-01

The presentation will consist of showing arc jet data mysterious to the modelers. It will show pictures from an arc jet test where a material (unidentified) exhibited a failure mode that nobody understands followed by thermocouple data from arc jet tests on another (unidentified) material of interest in which the T/Cs exhibit repeatable, consistent, fascinating yet frustrating response characteristics that have the modelers stumped. This all happens between RT and 200 F. Unless we figure out what the responsible phenomenology is and can model it, we can't size the TPS with any confidence.

NuSTAR Detection of a Hard X-Ray Source in the Supernova Remnant-molecular Cloud Interaction Site of IC 443

NASA Astrophysics Data System (ADS)

Zhang, Shuo; Tang, Xiaping; Zhang, Xiao; Sun, Lei; Gotthelf, Eric V.; Zhang, Zhi-Yu; Li, Hui; Cheng, Allen; Pasham, Dheeraj; Baganoff, Frederick K.; Perez, Kerstin; Hailey, Charles J.; Mori, Kaya

2018-06-01

We report on a broadband study of a complex X-ray source (1SAX J0618.0+2227) associated with the interaction site of the supernova remnant (SNR) IC 443 and ambient molecular cloud (MC) using NuSTAR, XMM-Newton, and Chandra observations. Its X-ray spectrum is composed of both thermal and nonthermal components. The thermal component can be equally well represented by either a thin plasma model with kT = 0.19 keV or a blackbody model with kT = 0.11 keV. The nonthermal component can be fit with either a power law with Γ ∼ 1.7 or a cutoff power law with Γ ∼ 1.5 and a cutoff energy at E cut ∼ 18 keV. Using the newly obtained NuSTAR data set, we test three possible scenarios for isolated X-ray sources in the SNR–MC interaction site: (1) a pulsar wind nebula (PWN); (2) an SNR ejecta fragment; and (3) a shocked molecular clump. We conclude that this source is most likely composed of an SNR ejecta (or a PWN) and surrounding shocked molecular clumps. The nature of this hard X-ray source in the SNR–MC interaction site of IC 443 may shed light on unidentified X-ray sources with hard X-ray spectra in rich environments for star-forming regions, such as the Galactic center.

THE LOW-FREQUENCY RADIO CATALOG OF FLAT-SPECTRUM SOURCES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Massaro, F.; Giroletti, M.; D'Abrusco, R.

A well known property of the γ-ray sources detected by Cos-B in the 1970s, by the Compton Gamma-Ray Observatory in the 1990s, and recently by the Fermi observations is the presence of radio counterparts, particularly for those associated with extragalactic objects. This observational evidence is the basis of the radio-γ-ray connection established for the class of active galactic nuclei known as blazars. In particular, the main spectral property of the radio counterparts associated with γ-ray blazars is that they show a flat spectrum in the GHz frequency range. Our recent analysis dedicated to search blazar-like candidates as potential counterparts formore » the unidentified γ-ray sources allowed us to extend the radio-γ-ray connection in the MHz regime. We also showed that blazars below 1 GHz maintain flat radio spectra. Thus, on the basis of these new results, we assembled a low-frequency radio catalog of flat-spectrum sources built by combining the radio observations of the Westerbork Northern Sky Survey and of the Westerbork in the southern hemisphere catalog with those of the NRAO Very Large Array Sky survey (NVSS). This could be used in the future to search for new, unknown blazar-like counterparts of γ-ray sources. First, we found NVSS counterparts of Westerbork Synthesis Radio Telescope radio sources, and then we selected flat-spectrum radio sources according to a new spectral criterion, specifically defined for radio observations performed below 1 GHz. We also described the main properties of the catalog listing 28,358 radio sources and their logN-logS distributions. Finally, a comparison with the Green Bank 6 cm radio source catalog was performed to investigate the spectral shape of the low-frequency flat-spectrum radio sources at higher frequencies.« less

SU-E-I-74: Image-Matching Technique of Computed Tomography Images for Personal Identification: A Preliminary Study Using Anthropomorphic Chest Phantoms

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matsunobu, Y; Shiotsuki, K; Morishita, J

Purpose: Fingerprints, dental impressions, and DNA are used to identify unidentified bodies in forensic medicine. Cranial Computed tomography (CT) images and/or dental radiographs are also used for identification. Radiological identification is important, particularly in the absence of comparative fingerprints, dental impressions, and DNA samples. The development of an automated radiological identification system for unidentified bodies is desirable. We investigated the potential usefulness of bone structure for matching chest CT images. Methods: CT images of three anthropomorphic chest phantoms were obtained on different days in various settings. One of the phantoms was assumed to be an unidentified body. The bone imagemore » and the bone image with soft tissue (BST image) were extracted from the CT images. To examine the usefulness of the bone image and/or the BST image, the similarities between the two-dimensional (2D) or threedimensional (3D) images of the same and different phantoms were evaluated in terms of the normalized cross-correlation value (NCC). Results: For the 2D and 3D BST images, the NCCs obtained from the same phantom assumed to be an unidentified body (2D, 0.99; 3D, 0.93) were higher than those for the different phantoms (2D, 0.95 and 0.91; 3D, 0.89 and 0.80). The NCCs for the same phantom (2D, 0.95; 3D, 0.88) were greater compared to those of the different phantoms (2D, 0.61 and 0.25; 3D, 0.23 and 0.10) for the bone image. The difference in the NCCs between the same and different phantoms tended to be larger for the bone images than for the BST images. These findings suggest that the image-matching technique is more useful when utilizing the bone image than when utilizing the BST image to identify different people. Conclusion: This preliminary study indicated that evaluating the similarity of bone structure in 2D and 3D images is potentially useful for identifying of an unidentified body.« less

Delineating parameter unidentifiabilities in complex models

NASA Astrophysics Data System (ADS)

Raman, Dhruva V.; Anderson, James; Papachristodoulou, Antonis

2017-03-01

Scientists use mathematical modeling as a tool for understanding and predicting the properties of complex physical systems. In highly parametrized models there often exist relationships between parameters over which model predictions are identical, or nearly identical. These are known as structural or practical unidentifiabilities, respectively. They are hard to diagnose and make reliable parameter estimation from data impossible. They furthermore imply the existence of an underlying model simplification. We describe a scalable method for detecting unidentifiabilities, as well as the functional relations defining them, for generic models. This allows for model simplification, and appreciation of which parameters (or functions thereof) cannot be estimated from data. Our algorithm can identify features such as redundant mechanisms and fast time-scale subsystems, as well as the regimes in parameter space over which such approximations are valid. We base our algorithm on a quantification of regional parametric sensitivity that we call `multiscale sloppiness'. Traditionally, the link between parametric sensitivity and the conditioning of the parameter estimation problem is made locally, through the Fisher information matrix. This is valid in the regime of infinitesimal measurement uncertainty. We demonstrate the duality between multiscale sloppiness and the geometry of confidence regions surrounding parameter estimates made where measurement uncertainty is non-negligible. Further theoretical relationships are provided linking multiscale sloppiness to the likelihood-ratio test. From this, we show that a local sensitivity analysis (as typically done) is insufficient for determining the reliability of parameter estimation, even with simple (non)linear systems. Our algorithm can provide a tractable alternative. We finally apply our methods to a large-scale, benchmark systems biology model of necrosis factor (NF)-κ B , uncovering unidentifiabilities.

Devosia honganensis sp. nov., isolated from the soil of a chemical factory.

PubMed

Zhang, Long; Song, Man; Chen, Xiao-Long; Xu, Ren-Jie; Chen, Kai; Li, Shun-Peng; Xia, Zhen-Yuan; Jiang, Jian-Dong

2015-12-01

A Gram-negative, strictly aerobic, yellow-pigmented and rod-shaped bacterium, designated strain NSL10(T), was isolated from the waste surface soil of a chemical factory in Hongan, China. Strain NSL10(T) was found to grow optimally at pH 7.0, 30 °C and in the absence of NaCl in modified LB medium. Cells were found to be positive for catalase and oxidase. The G+C content of the total DNA was determined to be 66.8 mol%. The 16S rRNA gene sequence of strain NSL10(T) showed the highest similarity to that of Devosia albogilva IPL15(T) (96.80 %), followed by Devosia geojensis BD-c194(T) (96.46 %) and Devosia chinhatensis IPL18(T) (96.27 %). The major cellular fatty acids of strain NSL10(T) were identified as C18:1 ω7c/C18:1 ω6c (48.2 %) and C16:0 (17.7 %). The major polar lipids were identified as diphosphatidylglycerol, phosphatidylglycerol, two unidentified glycolipids and an unidentified compound. Minor amounts of unidentified glycolipids and unidentified polar lipids were also detected. These chemotaxonomic data supported the affiliation of strain NSL10(T) to the genus Devosia. In conclusion, on the basis of biochemical, physiological characteristics and molecular properties, strain NSL10(T) represents a novel species within the genus Devosia, for which the name Devosia honganensis sp. nov., is proposed. The type strain is NSL10(T) (=KCTC 42281(T) = ACCC 19737(T)).

Identification of major depressive disorder among the long-term unemployed.

PubMed

Nurmela, Kirsti; Mattila, Aino; Heikkinen, Virpi; Uitti, Jukka; Ylinen, Aarne; Virtanen, Pekka

2018-01-01

Depression is a common mental health disorder among the unemployed, but research on identifying their depression in health care is scarce. The present study aimed to explore the identification of major depressive disorder (MDD) in health care on long-term unemployed and find out if the duration of unemployment correlates with the risk for unidentified MDD. The study sample consisted the patient files of long-term unemployed people (duration of unemployment 1-35 years, median 11 years), who in a screening project diagnosed with MDD (n = 243). The MDD diagnosis was found in the health care records of 101. Binomial logistic regression models were used to explore the effect of the duration of unemployment, as a discrete variable, to the identification of MDD in health care. MDD was appropriately identified in health care for 42% (n = 101) of the participants with MDD. The odds ratio for unidentified MDD in health care was 1.060 (95% confidence interval 1.011; 1.111, p = 0.016) per unemployment year. When unemployment had continued, for example, for five years the odds ratio for having unidentified MDD was 1.336. The association remained significant throughout adjustments for the set of background factors (gender, age, occupational status, marital status, homelessness, criminal record, suicide attempts, number of health care visits). This study among depressed long-term unemployed people indicates that the longer the unemployment period has lasted, the more commonly these people suffer from unidentified MDD. Health services should be developed with respect to sensitivity to detect signs of depression among the long-term unemployed.

Chitinophaga costaii sp. nov., an endophyte of Pinus pinaster, and emended description of Chitinophaga niabensis.

PubMed

Proença, Diogo Neves; Nobre, Maria Fernanda; Morais, Paula V

2014-04-01

Bacterial strain A37T2(T) was isolated from the endophytic microbial community of a Pinus pinaster tree trunk and characterized. Strain A37T2(T) was Gram-stain-negative, formed rod-shaped cells, and grew optimally at 26-30 °C and at pH 5.5-7.5. The G+C content of the DNA was 46.6 mol%. The major respiratory quinone was menaquinone 7 (MK-7) and the major fatty acids were C16 : 1ω5c and iso-C15 : 0, representing 61.7 % of the total fatty acids. The polar lipids consisted of phosphatidylethanolamine, four unidentified aminophospholipids, one unidentified phospholipid, two unidentified aminolipids and three unidentified lipids. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain A37T2(T) belonged to the family Chitinophagaceae, forming a distinct branch with Chitinophaga niabensis JS13-10(T) within the genus Chitinophaga. Strain A37T2(T) shared between 92.7 and 95.1 % 16S rRNA gene sequence similarity with the type strains of species of the genus Chitinophaga. The phylogenetic, phenotypic and chemotaxonomic data presented indicate that strain A37T2(T) represents a novel species of the genus Chitinophaga, for which the name Chitinophaga costaii sp. nov. is proposed. The type strain is A37T2(T) ( = CIP 110584(T) = LMG 27458(T)). An emended description of Chitinophaga niabensis JS13-10(T) is also proposed.

Molecular characterization of kudoid parasites (Myxozoa: Multivalvulida) from somatic muscles of Pacific bluefin (Thunnus orientalis) and yellowfin (T. albacores) tuna.

PubMed

Abe, Niichiro; Maehara, Tomofumi

2013-06-01

The public health importance of Kudoa infection in fish remains unclear. Recently in Japan a Kudoa species, K. septempunctata, was newly implicated as a causative agent of unidentified food poisoning related to the consumption of raw olive flounder. Other marine fishery products are also suspected as causative raw foods of unidentified food poisoning. For this study, we detected kudoid parasites from sliced raw muscle tissues of a young Pacific bluefin and an adult yellowfin tuna. No cyst or pseudocyst was evident in muscles macroscopically, but pseudocysts were detected in both samples histologically. One substitution (within 1100 bp overlap) and ten substitutions (within 753 bp overlap) were found respectively between the partial sequences of 18S and 28S rDNAs from both isolates. Nucleotide sequence similarity searching of 18S and 28S rDNAs from both isolates showed the highest identity with those of K. neothunni from tuna. Based on the spore morphology, the mode of parasitism, and the nucleotide sequence similarity, these isolates from a Pacific bluefin and a yellowfin tuna were identified as K. neothunni. Phylogenetic analysis of the 28S rDNA sequence revealed that K. neothunni is classifiable into two genotypes: one from Pacific bluefin and the other from yellowfin tuna. Recently, an unidentified kudoid parasite morphologically and genetically similar K. neothunni were detected from stocked tuna samples in unidentified food poisoning cases in Japan. The possibility exists that K. neothunni, especially from the Pacific bluefin tuna, causes food poisoning, as does K. septempunctata.

Flavisolibacter carri sp. nov., isolated from an automotive air-conditioning system.

PubMed

Lee, Hyosun; Kim, Dong-Uk; Lee, Suyeon; Kim, Song-Gun; Park, A-Young; Ahn, Jae-Hyung; Ka, Jong-Ok

2018-04-18

A Gram-stain negative, aerobic, non-motile, rod-shaped and yellow bacterium, designated TX0651 T , was isolated from an automotive air-conditioning system. Phylogenetically, the strain groups with the members of the genus Flavisolibacter and exhibits high 16S rRNA gene sequence similarities with Flavisolibacter ginsenosidimutans Gsoil 636 T (97.4%), Flavisolibacter ginsengiterrae Gsoil 492 T (96.3%) and Flavisolibacter ginsengisoli Gsoil 643 T (96.2%). DNA-DNA relatedness between TX0651 T and F. ginsenosidimutans KCTC 22818 T and F. ginsengiterrae KCTC 12656 T were determined to be less than 40%. The low levels of DNA-DNA relatedness identifies the strain TX0651 T as a novel species in the genus Flavisolibacter. The major cellular fatty acids were identified as iso-C 15:0 , summed feature 3 (C 16:1 ω7c and/or C 16:1 ω6c), iso-C 15:1 G and iso-C 17:0 3-OH. The predominant respiratory quinone was identified as MK-7. The polar lipids were found to be comprised of phosphatidylethanolamine, unidentified amino-glycophospholipids, an unidentified aminophospholipid, an unidentified amino lipid and unidentified lipids. The DNA G+C content of the strain was determined to be 31.2 mol%. On the basis of the phenotypic, genotypic and chemotaxonomic characteristics, strain TX0651 T should be classified in a novel species in the genus Flavisolibacter, for which the name Flavisolibacter carri sp. nov. (= KACC 19014 T  = KCTC 52836 T  = NBRC 111784 T ) is proposed.

Prevalence and Penetrance of Major Genes and Polygenes for Colorectal Cancer

PubMed Central

Win, Aung Ko; Jenkins, Mark A.; Dowty, James G.; Antoniou, Antonis C.; Lee, Andrew; Giles, Graham G.; Buchanan, Daniel D.; Clendenning, Mark; Rosty, Christophe; Ahnen, Dennis J.; Thibodeau, Stephen N.; Casey, Graham; Gallinger, Steven; Le Marchand, Loïc; Haile, Robert W.; Potter, John D.; Zheng, Yingye; Lindor, Noralane M.; Newcomb, Polly A.; Hopper, John L.; MacInnis, Robert J.

2016-01-01

Background While high-risk mutations in identified major susceptibility genes (DNA mismatch repair genes and MUTYH) account for some familial aggregation of colorectal cancer, their population prevalence and the causes of the remaining familial aggregation are not known. Methods We studied the families of 5,744 colorectal cancer cases (probands) recruited from population cancer registries in the USA, Canada and Australia and screened probands for mutations in mismatch repair genes and MUTYH. We conducted modified segregation analyses using the cancer history of first-degree relatives, conditional on the proband’s age at diagnosis. We estimated the prevalence of mutations in the identified genes, the prevalence of and hazard ratio for unidentified major gene mutations, and the variance of the residual polygenic component. Results We estimated that 1 in 279 of the population carry mutations in mismatch repair genes (MLH1= 1 in 1946, MSH2= 1 in 2841, MSH6= 1 in 758, PMS2= 1 in 714), 1 in 45 carry mutations in MUTYH, and 1 in 504 carry mutations associated with an average 31-fold increased risk of colorectal cancer in unidentified major genes. The estimated polygenic variance was reduced by 30–50% after allowing for unidentified major genes and decreased from 3.3 for age <40 years to 0.5 for age ≥70 years (equivalent to sibling relative risks of 5.1 to 1.3, respectively). Conclusion Unidentified major genes might explain one-third to one-half of the missing heritability of colorectal cancer. Impact Our findings could aid gene discovery and development of better colorectal cancer risk prediction models. PMID:27799157

Using interval maxima regression (IMR) to determine environmental optima controlling Microcystis spp. growth in Lake Taihu.

PubMed

Li, Ming; Peng, Qiang; Xiao, Man

2016-01-01

Fortnightly investigations at 12 sampling sites in Meiliang Bay and Gonghu Bay of Lake Taihu (China) were carried out from June to early November 2010. The relationship between abiotic factors and cell density of different Microcystis species was analyzed using the interval maxima regression (IMR) to determine the optimum temperature and nutrient concentrations for growth of different Microcystis species. Our results showed that cell density of all the Microcystis species increased along with the increase of water temperature, but Microcystis aeruginosa adapted to a wide range of temperatures. The optimum total dissolved nitrogen concentrations for M. aeruginosa, Microcystis wesenbergii, Microcystis ichthyoblabe, and unidentified Microcystis were 3.7, 2.0, 2.4, and 1.9 mg L(-1), respectively. The optimum total dissolved phosphorus concentrations for different species were M. wesenbergii (0.27 mg L(-1)) > M. aeruginosa (0.1 mg L(-1)) > M. ichthyoblabe (0.06 mg L(-1)) ≈ unidentified Microcystis, and the iron (Fe(3+)) concentrations were M. wesenbergii (0.73 mg L(-1)) > M. aeruginosa (0.42 mg L(-1)) > M. ichthyoblabe (0.35 mg L(-1)) > unidentified Microcystis (0.09 mg L(-1)). The above results suggest that if phosphorus concentration was reduced to 0.06 mg L(-1) or/and iron concentration was reduced to 0.35 mg L(-1) in Lake Taihu, the large colonial M. wesenbergii and M. aeruginosa would be replaced by small colonial M. ichthyoblabe and unidentified Microcystis. Thereafter, the intensity and frequency of the occurrence of Microcystis blooms would be reduced by changing Microcystis species composition.

A novel genus of the class Actinobacteria, Longivirga aurantiaca gen. nov., sp. nov., isolated from lake sediment.

PubMed

Qu, Jian-Hang; Zhang, Lu-Jie; Fu, Yun-Hui; Li, Xiao-Dan; Li, Hai-Feng; Tian, Hai-Long

2018-03-01

A novel actinobacterial strain, designated X5 T , was isolated from the sediment of Taihu Lake in China and was subjected to a polyphasic taxonomic characterization. The strain formed orange-red colonies comprising aerobic, Gram-stain-negative, rod-shaped cells on R2A agar. Phylogenetic analysis based on the 16S rRNA gene sequences revealed that the organism was closely related to the genus Sporichthya and consistently formed a distinct clade along with the members of this genus. The closest phylogenetic neighbour was Sporichthya polymorpha NBRC 12702 T with 93.7 % 16S rRNA gene sequence similarity. The major fatty acids (>10 %) were iso-C16 : 0 (18.7 %), C18 : 1ω9c (18.6 %) and C17 : 1ω8c (14.0 %). The genomic DNA G+C content was 74.4 mol%. The organism contained menaquinone MK-8(H2), MK-9(H4) and an unidentified menaquinone. Polar lipids were composed of phosphatidylglycerol, an unidentified lipid, two unidentified phospholipids and two unidentified aminolipids. The whole-cell sugars contained ribose, xylose, mannose, glucose and galactose. The cell-wall peptidoglycan contained ll-diaminopimelic acid. Based on the physiological, biochemical and chemotaxonomic data, the organism is proposed to represent a novel genus and species, for which the name Longivirga aurantiaca gen. nov., sp. nov. is proposed. The type strain is X5 T (=CGMCC 4.7317 T =NBRC 112237 T ).

Umboniibacter roseus sp. nov., isolated from coastal seawater.

PubMed

Sung, Hye-Ri; Kim, Mibang; Shin, Kee-Sun

2015-11-01

A Gram-reaction-negative, non-motile, strictly aerobic, dark pink-pigmented and rod-shaped bacterial isolate, designated 14-121-B13T, was isolated from surface seawater off the coast of the South Sea at Namhae-gun, Republic of Korea. Cells were catalase- and oxidase-positive and required NaCl for growth. Strain 14-121-B13T grew optimally at 30 °C, in the presence of 2 % (w/v) NaCl and at pH 7.5-8.0.Neighbour-joining, maximum-likelihood and maximum-parsimony phylogenetic trees based on 16S rRNA gene sequences showed that strain 14-121-B13T clustered with the type strain of Umboniibacter marinipuniceus, with which it exhibited 96.7 % sequence similarity. The DNA G+C content of strain 14-121-B13T was 48.9 mol%. The major cellular fatty acids were summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c) and C16 : 0. The major respiratory quinone was ubiquinone Q-7 and the polar lipids detected in strain 14-121-B13T were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, an unidentified aminolipid, unidentified phospholipids, unidentified aminophospholipids and unidentified lipids. Based on the phenotypic, chemotaxonomic and phylogenetic data presented, strain 14-121-B13T is considered to represent a novel species of the genus, Umboniibacter for which the name Umboniibacter roseus sp. nov. is proposed. The type strain is 14-121-B13T ( = DSM 29882T = KCTC 42467T).

Approaching the taxonomic affiliation of unidentified sequences in public databases--an example from the mycorrhizal fungi.

PubMed

Nilsson, R Henrik; Kristiansson, Erik; Ryberg, Martin; Larsson, Karl-Henrik

2005-07-18

During the last few years, DNA sequence analysis has become one of the primary means of taxonomic identification of species, particularly so for species that are minute or otherwise lack distinct, readily obtainable morphological characters. Although the number of sequences available for comparison in public databases such as GenBank increases exponentially, only a minuscule fraction of all organisms have been sequenced, leaving taxon sampling a momentous problem for sequence-based taxonomic identification. When querying GenBank with a set of unidentified sequences, a considerable proportion typically lack fully identified matches, forming an ever-mounting pile of sequences that the researcher will have to monitor manually in the hope that new, clarifying sequences have been submitted by other researchers. To alleviate these concerns, a project to automatically monitor select unidentified sequences in GenBank for taxonomic progress through repeated local BLAST searches was initiated. Mycorrhizal fungi--a field where species identification often is prohibitively complex--and the much used ITS locus were chosen as test bed. A Perl script package called emerencia is presented. On a regular basis, it downloads select sequences from GenBank, separates the identified sequences from those insufficiently identified, and performs BLAST searches between these two datasets, storing all results in an SQL database. On the accompanying web-service http://emerencia.math.chalmers.se, users can monitor the taxonomic progress of insufficiently identified sequences over time, either through active searches or by signing up for e-mail notification upon disclosure of better matches. Other search categories, such as listing all insufficiently identified sequences (and their present best fully identified matches) publication-wise, are also available. The ever-increasing use of DNA sequences for identification purposes largely falls back on the assumption that public sequence databases contain a thorough sampling of taxonomically well-annotated sequences. Taxonomy, held by some to be an old-fashioned trade, has accordingly never been more important. emerencia does not automate the taxonomic process, but it does allow researchers to focus their efforts elsewhere than countless manual BLAST runs and arduous sieving of BLAST hit lists. The emerencia system is available on an open source basis for local installation with any organism and gene group as targets.

SPECTRUM AND MORPHOLOGY OF THE TWO BRIGHTEST MILAGRO SOURCES IN THE CYGNUS REGION: MGRO J2019+37 AND MGRO J2031+41

DOE Office of Scientific and Technical Information (OSTI.GOV)

Abdo, A. A.; Abeysekara, U.; Linnemann, J. T.

2012-07-10

The Cygnus region is a very bright and complex portion of the TeV sky, host to unidentified sources and a diffuse excess with respect to conventional cosmic-ray propagation models. Two of the brightest TeV sources, MGRO J2019+37 and MGRO J2031+41, are analyzed using Milagro data with a new technique, and their emission is tested under two different spectral assumptions: a power law and a power law with an exponential cutoff. The new analysis technique is based on an energy estimator that uses the fraction of photomultiplier tubes in the observatory that detect the extensive air shower. The photon spectrum ismore » measured in the range 1-100 TeV using the last three years of Milagro data (2005-2008), with the detector in its final configuration. An F-test indicates that MGRO J2019+37 is better fit by a power law with an exponential cutoff than by a simple power law. The best-fitting parameters for the power law with exponential cutoff model are a normalization at 10 TeV of 7{sup +5}{sub -2} Multiplication-Sign 10{sup -10} s{sup -1} m{sup -2} TeV{sup -1}, a spectral index of 2.0{sup +0.5}{sub -1.0}, and a cutoff energy of 29{sup +50}{sub -16} TeV. MGRO J2031+41 shows no evidence of a cutoff. The best-fitting parameters for a power law are a normalization of 2.1{sup +0.6}{sub -0.6} Multiplication-Sign 10{sup -10} s{sup -1} m{sup -2} TeV{sup -1} and a spectral index of 3.22{sup +0.23}{sub -0.18}. The overall flux is subject to a {approx}30% systematic uncertainty. The systematic uncertainty on the power-law indices is {approx}0.1. Both uncertainties have been verified with cosmic-ray data. A comparison with previous results from TeV J2032+4130, MGRO J2031+41, and MGRO J2019+37 is also presented.« less

Spectrum and Morphology of the Two Brightest Milagro Sources in the Cygnus Region: MGRO J2019+37 and MGRO J2031+41

NASA Technical Reports Server (NTRS)

Abdo, A. A.; Abeysekara, U.; Allen, B, T.; Aune, T.; Berley, D.; Bonamente, E.; Christopher, G. E.; DeYoung, T.; Dingus, B. L.; Ellsworth, R. W.;

FERMI Large Area Telescope Detection of Pulsed γ-Rays from the Vela-Like Pulsars PSR J1048–5832 and PSR J2229+6114

DOE PAGES

Abdo, A. A.; Ackermann, M.; Ajello, M.; ...

2009-11-11

Within this paper, we report the detection of γ-ray pulsations (≥0.1 GeV) from PSR J2229+6114 and PSR J1048–5832, the latter having been detected as a low-significance pulsar by EGRET. Data in the γ-ray band were acquired by the Large Area Telescope (LAT) aboard the Fermi Gamma-ray Space Telescope, while the radio rotational ephemerides used to fold the γ-ray light curves were obtained using the Green Bank Telescope, the Lovell telescope at Jodrell Bank, and the Parkes Telescope. The two young radio pulsars, located within the error circles of the previously unidentified EGRET sources 3EG J1048–5840 and 3EG J2227+6122, present spin-downmore » characteristics similar to the Vela pulsar. PSR J1048–5832 shows two sharp peaks at phases 0.15 ± 0.01 and 0.57 ± 0.01 relative to the radio pulse confirming the EGRET light curve, while PSR J2229+6114 presents a very broad peak at phase 0.49 ± 0.01. The γ-ray spectra above 0.1 GeV of both pulsars are fit with power laws having exponential cutoffs near 3 GeV, leading to integral photon fluxes of (2.19 ± 0.22 ± 0.32) × 10 –7 cm –2 s –1 for PSR J1048–5832 and (3.77 ± 0.22 ± 0.44) × 10 –7 cm –2 s –1 for PSR J2229+6114. The first uncertainty is statistical and the second is systematic. PSR J1048–5832 is one of the two LAT sources which were entangled together as 3EG J1048–5840. In conclusion, these detections add to the growing number of young γ-ray pulsars that make up the dominant population of GeV γ-ray sources in the Galactic plane.« less

Influence of endogenous and exogenous electron donors and trichloroethylene oxidation toxicity on trichloroethylene oxidation by methanotrophic cultures from a groundwater aquifer.

PubMed Central

Henry, S M; Grbić-Galić, D

1991-01-01

Trichloroethylene (TCE)-transforming aquifer methanotrophs were evaluated for the influence of TCE oxidation toxicity and the effect of reductant availability on TCE transformation rates during methane starvation. TCE oxidation at relatively low (6 mg liter-1) TCE concentrations significantly reduced subsequent methane utilization in mixed and pure cultures tested and reduced the number of viable cells in the pure culture Methylomonas sp. strain MM2 by an order of magnitude. Perchloroethylene, tested at the same concentration, had no effect on the cultures. Neither the TCE itself nor the aqueous intermediates were responsible for the toxic effect, and it is suggested that TCE oxidation toxicity may have resulted from reactive intermediates that attacked cellular macromolecules. During starvation, all methanotrophs tested exhibited a decline in TCE transformation rates, and this decline followed exponential decay. Formate, provided as an exogenous electron donor, increased TCE transformation rates in Methylomonas sp. strain MM2, but not in mixed culture MM1 or unidentified isolate, CSC-1. Mixed culture MM2 did not transform TCE after 15 h of starvation, but mixed cultures MM1 and MM3 did. The methanotrophs in mixed cultures MM1 and MM3, and the unidentified isolate CSC-1 that was isolated from mixed culture MM1 contained lipid inclusions, whereas the methanotrophs of mixed culture MM2 and Methylomonas sp. strain MM2 did not. It is proposed that lipid storage granules serve as an endogenous source of electrons for TCE oxidation during methane starvation. Images PMID:2036010

Preliminary Investigation and Surficial Mapping of the Faults North and South of Blacktail Butte, Teton County, Wyoming

NASA Astrophysics Data System (ADS)

Wittke, S.

2016-12-01

The Wyoming State Geological Survey has focused on surficial mapping and examination of the location and offset of faults north and south of Blacktail Butte in eastern Jackson Hole, Wyoming. The fault strands south of Blacktail Butte are classified as Late Quaternary, the faults north of the butte are considered Class B structures by the USGS. Little to no detailed studies, including paleoseismic investigations or fault scarp morphology, have been conducted on these fault strands. The acquisition of LiDAR for the Grand Teton National Park and recent aerial photographs provided data necessary for revised mapping and geomorphic interpretation of fault-related features north and south of Blacktail Butte. New fault traces and geomorphic features were identified in the LiDAR data which had not been previously mapped. Mapped fault traces are intermittent, forming a 1.5 km-long graben that extends south from Blacktail Butte and crosses a loess-mantle late-Pleistocene terrace generated from the Pinedale glaciation. Other lineaments were identified that continued for another 0.5 km to the south. With very little vertical offset across the system and comparatively short fault strands, the faults may represent secondary features related to movement on another unidentified fault within the basin. The secondary faults north of Blacktail Butte were mapped based on geomorphic features and through LiDAR-based spatial analysis. The fault scarps are relatively short and are present on alluvial fan and/or terrace deposits related to the Pinedale glaciation or on undated Holocene deposits. The scarps have little net vertical offset, suggesting they could also be secondary features related to movement from another unidentified fault within the basin. Improved understanding of these fault strands is significant because of the vicinity to populated areas within Jackson Hole and the possible relevance to the Teton Fault system. To our knowledge, these fault strands have not been proposed as antithetic to the Teton fault. The faults are located on the eastern edge of the valley, approximately 8-16 km from the Teton fault, and based on their orientation and sense of slip, the Teton fault may be the unidentified fault within the basin. Detailed paleoseismic surveys, including fault trenching, may shed light on the question in the future.

Roseomonas rubra sp. nov., isolated from lagoon sediments.

PubMed

Subhash, Y; Bang, John J; You, Taek H; Lee, Sang-Seob

2016-10-01

A novel Gram-stain-negative, coccus to oval-shaped, non-motile bacterium, designated strain S5T, was isolated from lagoon sediments collected from North Carolina, USA. Strain S5T was able to grow at 12-45 °C (optima, 30-37 °C) and at pH 6.3-9.0 (optima, 6.5-7.5). No added NaCl was required for growth of strain S5T. Strain S5T was positive for catalase and oxidase activity. C18 : 1ω6c/C18 : 1ω7c, C16 : 1ω6c/C16 : 1ω7c and C16 : 0 were predominant fatty acids with minor amounts of C8 : 0 3-OH, C14 : 0, C16 : 0 3-OH, C18 : 1 2-OH, C14 : 1ω5c, C16 : 1ω5c and C19 : 0 cyclo ω8c. Diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine and an unidentified glycolipid were major polar lipids. Minor amounts of an unidentified amino lipid and three unidentified lipids were also detected. The G+C content of the genomic DNA was 73.5 mol%. 16S rRNA gene sequence comparisons indicated that strain S5T represents a member of the genus Roseomonas within the family Acetobacteraceae of the class Alphaproteobacteria. Strain S5T had a sequence similarity of 97.80 % with Roseomonas rhizosphaerae YW11T, 97.69 % with Roseomonas aestuarii JC17T and <97 % with other members of the genus Roseomonas. However, strain S5T showed only 45.2±2 and 17±2 % relatedness (based on DNA-DNA hybridization) with R. rhizosphaerae KACC 17225T (=YW11T) and R. aestuarii KCTC 22692T (=JC17T), respectively. Distinct morphological, physiological and genotypic differences from previously described taxa support the classification of strain S5T as a representative of a novel species in the genus Roseomonas, for which the name Roseomonas rubra sp. nov. is proposed. The type strain is S5T (=KEMB 563-468T=JCM 31177T).

Demographic and Ecological Effects on Patterns of Parasitism in Eastern Chimpanzees (Pan troglodytes schweinfurthii) in Gombe National Park, Tanzania

PubMed Central

Gillespie, Thomas R.; Lonsdorf, Elizabeth V.; Canfield, Elizabeth P.; Meyer, Derek J.; Nadler, Yvonne; Raphael, Jane; Pusey, Anne E.; Pond, Joel; Pauley, John; Mlengeya, Titus; Travis, Dominic A.

2014-01-01

From January 2006 to January 2008, we collected 1,045 fecal samples from 90 individually-recognized, free-ranging, eastern chimpanzees (Pan troglodytes schweinfurthii) inhabiting Gombe National Park, Tanzania to determine how patterns of parasitism are affected by demographic and ecological covariates. Seventeen parasite species were recovered, including eight nematodes (Oesophagostomum sp., Necator sp., Probstmayria gombensis, Strongyloides fulleborni, Ascaris sp., Trichuris sp., Abbreviata caucasica, and an unidentified strongyle), 1 cestode (Bertiella sp.), 1 trematode (Dicrocoeliidae), and 7 protozoa (Entamoeba coli, Entamoeba histolytica/dispar, Iodamoeba bütschlii, Troglodytella abrassarti, Troglocorys cava, Balantidium coli, and an unidentified protozoa). Significant differences were observed in interannual infection prevalence and parasite richness between 2006 and 2007. Intercommunity comparisons demonstrated higher prevalence of parasites for the Mitumba compared with Kasekela chimpanzee community. Prevalence of several parasites was strongly correlated with monthly rainfall patterns for both 2006 and 2007. Subadult chimpanzees had lower prevalence for most parasite species compared with adults in both years and also yielded a lower average parasite species richness. No significant differences were observed between males and females in prevalence in 2006. However, in 2007 the prevalence of S. fulleborni and I. bütschlii were higher in males than in females. Parasite prevalence and richness were substantially higher in this multiyear study compared with previous short-term studies of the gastrointestinal parasites of Gombe chimpanzees. This coupled with the significant interannual and interseasonal variation, demonstrated in this study, emphasizes the importance of multiyear monitoring with adequate sample size to effectively determine patterns of parasitism in wild primate populations. PMID:20623606

The phylogenetic position of poroid Hymenochaetaceae (Hymenochaetales, Basidiomycota) from Patagonia, Argentina.

PubMed

Rajchenberg, Mario; Pildain, María Belén; Bianchinotti, María V; Barroetaveña, Carolina

2015-01-01

Six poroid Hymenochaetaceae from Patagonia, Argentina, were studied phylogenetically with nuc rDNA internal transcribed spacer (ITS) and partial 28S rDNA sequences, together with morphological data. Two new genera and a new species are introduced as well as two new combinations proposed. Arambarria destruens gen. et sp. nov. is proposed for a taxon fruiting on fallen or standing, dead Diostea juncea and Lomatia hirsuta and previously recorded erroneously as Inocutis jamaicensis; it is distinguished by annual, effused to effused-reflexed basidiomes forming pilei, a monomitic hyphal system, thick-walled and yellowish basidiospores (brownish chestnut in potassium hydroxide solution), lack of a granular core in the context and lack of setoid elements. Nothophellinus gen. nov. is proposed to accommodate Phellinus andinopatagonicus, the main white wood-rotting polypore of standing Nothofagus pumilio and also an important wood-decayer of other Nothofagus species from southern Argentina and Chile. It is morphologically similar to Phellopilus (type species P. nigrolimitatus) but differs by lacking setae. The new combinations Pseudoinonotus crustosus and Phellinopsis andina are proposed for Inonotus crustosus and Phellinus andinus, respectively. Phellinus livescens, which decays the sapwood of several standing Nothofagus species, is closely related to Phellinus uncisetus, a Neotropical species related to Fomitiporia; for the time being P. livescens is retained in Phellinus sensu lato. An unidentified taxon responsible for a white heart-rot in living Austrocedrus chilensis grouped with Phellinus caryophyllii and Fulvifomes inermis, but its generic affinities remain ambiguous. Transmission electron microscopy studies confirm this unidentified taxon has an imperforate parenthesome, which is typical of the Hymenochaetaceae. © 2015 by The Mycological Society of America.

Studying the High Energy Gamma Ray Sky with Gamma Ray Large Area Space Telescope (GLAST)

NASA Technical Reports Server (NTRS)

Kamae, T.; Ohsugi, T.; Thompson, D. J.; Watanabe, K.

1998-01-01

Building on the success of the Energetic Gamma Ray Experiment Telescope (EGRET) on the Compton Gamma Ray Observatory, the Gamma Ray Large Area Space Telescope (GLAST) will make a major step in the study of such subjects as blazars, gamma Ray bursts, the search for dark matter, supernova remnants, pulsars, diffuse radiation, and unidentified high energy sources. The instrument will be built on new and mature detector technologies such as silicon strip detectors, low-power low-noise LSI, and a multilevel data acquisition system. GLAST is in the research and development phase, and one full tower (of 25 total) is now being built in collaborating institutes. The prototype tower will be tested thoroughly at Stanford Linear Accelerator Center (SLAC) in the fall of 1999.

Detection of gamma-ray emission from the Vela pulsar wind nebula with AGILE.

PubMed

Pellizzoni, A; Trois, A; Tavani, M; Pilia, M; Giuliani, A; Pucella, G; Esposito, P; Sabatini, S; Piano, G; Argan, A; Barbiellini, G; Bulgarelli, A; Burgay, M; Caraveo, P; Cattaneo, P W; Chen, A W; Cocco, V; Contessi, T; Costa, E; D'Ammando, F; Del Monte, E; De Paris, G; Di Cocco, G; Di Persio, G; Donnarumma, I; Evangelista, Y; Feroci, M; Ferrari, A; Fiorini, M; Fuschino, F; Galli, M; Gianotti, F; Hotan, A; Labanti, C; Lapshov, I; Lazzarotto, F; Lipari, P; Longo, F; Marisaldi, M; Mastropietro, M; Mereghetti, S; Moretti, E; Morselli, A; Pacciani, L; Palfreyman, J; Perotti, F; Picozza, P; Pittori, C; Possenti, A; Prest, M; Rapisarda, M; Rappoldi, A; Rossi, E; Rubini, A; Santolamazza, P; Scalise, E; Soffitta, P; Striani, E; Trifoglio, M; Vallazza, E; Vercellone, S; Verrecchia, F; Vittorini, V; Zambra, A; Zanello, D; Giommi, P; Colafrancesco, S; Antonelli, A; Salotti, L; D'Amico, N; Bignami, G F

2010-02-05

Pulsars are known to power winds of relativistic particles that can produce bright nebulae by interacting with the surrounding medium. These pulsar wind nebulae are observed by their radio, optical, and x-ray emissions, and in some cases also at TeV (teraelectron volt) energies, but the lack of information in the gamma-ray band precludes drawing a comprehensive multiwavelength picture of their phenomenology and emission mechanisms. Using data from the AGILE satellite, we detected the Vela pulsar wind nebula in the energy range from 100 MeV to 3 GeV. This result constrains the particle population responsible for the GeV emission and establishes a class of gamma-ray emitters that could account for a fraction of the unidentified galactic gamma-ray sources.

Biomonitoring in California firefighters: metals and perfluorinated chemicals.

PubMed

Dobraca, Dina; Israel, Leslie; McNeel, Sandra; Voss, Robert; Wang, Miaomiao; Gajek, Ryszard; Park, June-Soo; Harwani, Suhash; Barley, Frank; She, Jianwen; Das, Rupali

2015-01-01

To assess California firefighters' blood concentrations of selected chemicals and compare with a representative US population. We report laboratory methods and analytic results for cadmium, lead, mercury, and manganese in whole blood and 12 serum perfluorinated chemicals in a sample of 101 Southern California firefighters. Firefighters' blood metal concentrations were all similar to or lower than the National Health and Nutrition Examination Survey (NHANES) values, except for six participants whose mercury concentrations (range: 9.79 to 13.42 μg/L) were close to or higher than the NHANES reporting threshold of 10 μg/L. Perfluorodecanoic acid concentrations were elevated compared with NHANES and other firefighter studies. Perfluorodecanoic acid concentrations were three times higher in this firefighter group than in NHANES adult males. Firefighters may have unidentified sources of occupational exposure to perfluorinated chemicals.

Nitrite Formation from Hydroxylamine and Oximes by Pseudomonas aeruginosa

PubMed Central

Amarger, Noelle; Alexander, M.

1968-01-01

Nitrite was formed from hydroxylamine and several oximes by intact cells and extracts of Pseudomonas aeruginosa. The activity was induced by the presence of oximes in the culture medium. Nitroalkanes were not intermediates in the conversion of acetaldoxime, acetone oxime, or butanone oxime to nitrite, since nitromethane inhibited the formation of nitrite from the nitro compounds but not from the corresponding oximes. The oxime apparently functions as a constant source of hydroxylamine during growth of the bacterium. Hydroxylamine at low concentration was converted stoichiometrically to nitrite by extracts of the bacterium; high concentrations were inhibitory. Nicotinamide adenine dinucleotide phosphate, oxygen, and other unidentified cofactors were necessary for the reaction. Actively nitrifying extracts possessed no hydroxylamine-cytochrome c reductase activity. Hyponitrite, nitrous oxide, and nitric oxide were not metabolized. PMID:4384968

Observation of Nonthermal Emission from the Supernova Remnant IC443 with RXTE

NASA Technical Reports Server (NTRS)

Sturner, S. J.; Keohane, J. W.; Reimer, O.

2002-01-01

In this paper we present analysis of X-ray spectra from the supernova remnant IC443 obtained using the PCA on RXTE. The spectra in the 3 - 20 keV band are well fit by a two-component model consisting of thermal and nonthermal components. We compare these results with recent results of other X-ray missions and discuss the need for a cut-off in the nonthermal spectrum. Recent Chandra and XMM-Newton observations suggest that much of the nonthermal emission from IC443 can be attributed to a pulsar wind nebula. We present the results of our search for periodic emission in the RXTE PCA data. We then discuss the origin o f the nonthermal component and its possible association with the unidentified EGRET source.

Laboratory Rotational Spectroscopy in the Era of ALMA: Applications to Disks and Circumstellar Outflows

NASA Astrophysics Data System (ADS)

Ziurys, Lucy M.; McCarthy, Michael C.; Stancil, Phillip C.; Halfen, DeWayne; Burton, Mark; Gottlieb, Carl A.; Lee, Kelvin

2018-06-01

The enormous leap in sensitivity and angular resolution offered by the Atacama Large Millimeter Array (ALMA) has revealed the presence of ever greater chemical complexity in astronomical sources, with an increasing number of unidentified lines. The need for supporting laboratory spectroscopy has become more urgent to fully exploit the scientific impact of ALMA. Rotational transition measurements are particularly important in this regard, as are the evaluation of line strengths, collisional cross sections, and dipole moments. Here we present new spectroscopic data concerning a wide range of potential interstellar and circumstellar molecules, including silicon and metal-bearing species, lines arising from vibrationally-excited molecules, and supporting theoretical calculations. Recent work concerning AlC2, KO, and vibrationally-excited AlO will be presented.

GLAST Large Area Telescope Multiwavelength Planning

NASA Technical Reports Server (NTRS)

Thompson, D. J.; Cameron, R. A.; Digel, S. W.; Wood, K. S.

2006-01-01

Because gamma-ray astrophysics depends in many ways on multiwavelength studies, the GLAST Large Area Telescope (LAT) Collaboration has started multiwavelength planning well before the scheduled 2007 launch of the observatory. Some of the high-priority needs include: (1) radio and X-ray timing of pulsars; (2) expansion of blazar catalogs, including redshift measurements (3) improved observations of molecular clouds, especially at high galactic latitudes; (4) simultaneous broad-spectrum blazar flare measurements; (5) characterization of gamma-ray transients, including gamma ray bursts; (6) radio, optical, X-ray and TeV counterpart searches for unidentified gamma-ray sources. Work on the first three of these activities is needed before launch. The GLAST Large Area Telescope is an international effort, with U.S. funding provided by the Department of Energy and NASA.

The Fermi Gamma-Ray Space Telescope Discovers the Pulsar in the Young Galactic Supernova Remnant CTA 1

DOE PAGES

Abdo, A. A.; Ackermann, M.; Atwood, W. B.; ...

2008-11-21

Energetic young pulsars and expanding blast waves (supernova remnants, SNRs) are the most visible remains after massive stars, ending their lives, explode in core-collapse supernovae. The Fermi Gamma-Ray Space Telescope has unveiled a radio quiet pulsar located near the center of the compact synchrotron nebula inside the supernova remnant CTA 1. The pulsar, discovered through its gamma-ray pulsations, has a period of 316.86 ms, a period derivative of 3.614 x 10 -13 s s -1 . Its characteristic age of 10 4 years is comparable to that estimated for the SNR. It is conjectured that most unidentified Galactic gamma raymore » sources associated with star-forming regions and SNRs are such young pulsars.« less

Basics and applications of stem cells in the pancreas.

PubMed

Sekine, Keisuke; Taniguchi, Hideki

2012-11-01

Enormous efforts have been made to establish pancreatic stem/progenitor cells as a source for regenerative medicine for the treatment of diabetes mellitus. In recent years, it has been recognized that the self-renewal of beta cells is the dominant process involved in postnatal beta-cell regeneration and expansion. Nevertheless, several in-vitro studies have suggested that ductal or as yet unidentified cells are candidates for pancreatic stem/progenitor cells that can differentiate into multilineage cells, including insulin(+) cells. The question remains as to whether beta cells are generated postnatally from stem/progenitor cells other than pre-existing beta cells. Furthermore, mutated pancreatic stem cells are considered to be prospective candidates for cancer stem cells or tumor-initiating cells. This review highlights recent progress in pancreatic stem/progenitor cell research.

Cellular Localization and Characterization of Cytosolic Binding Partners for Gla Domain-containing Proteins PRRG4 and PRRG2*

PubMed Central

Yazicioglu, Mustafa N.; Monaldini, Luca; Chu, Kirk; Khazi, Fayaz R.; Murphy, Samuel L.; Huang, Heshu; Margaritis, Paris; High, Katherine A.

2013-01-01

The genes encoding a family of proteins termed proline-rich γ-carboxyglutamic acid (PRRG) proteins were identified and characterized more than a decade ago, but their functions remain unknown. These novel membrane proteins have an extracellular γ-carboxyglutamic acid (Gla) protein domain and cytosolic WW binding motifs. We screened WW domain arrays for cytosolic binding partners for PRRG4 and identified novel protein-protein interactions for the protein. We also uncovered a new WW binding motif in PRRG4 that is essential for these newly found protein-protein interactions. Several of the PRRG-interacting proteins we identified are essential for a variety of physiologic processes. Our findings indicate possible novel and previously unidentified functions for PRRG proteins. PMID:23873930

A rare variant in MYH6 is associated with high risk of sick sinus syndrome

PubMed Central

Holm, Hilma; Gudbjartsson, Daniel F; Sulem, Patrick; Masson, Gisli; Helgadottir, Hafdis Th; Zanon, Carlo; Magnusson, Olafur Th; Helgason, Agnar; Saemundsdottir, Jona; Gylfason, Arnaldur; Stefansdottir, Hrafnhildur; Gretarsdottir, Solveig; Matthiasson, Stefan E; Thorgeirsson, Guðmundur; Jonasdottir, Aslaug; Sigurdsson, Asgeir; Stefansson, Hreinn; Werge, Thomas; Rafnar, Thorunn; Kiemeney, Lambertus A; Parvez, Babar; Muhammad, Raafia; Roden, Dan M; Darbar, Dawood; Thorleifsson, Gudmar; Walters, G Bragi; Kong, Augustine; Thorsteinsdottir, Unnur; Arnar, David O; Stefansson, Kari

2011-01-01

Through complementary application of SNP genotyping, whole-genome sequencing and imputation in 38,384 Icelanders, we have discovered a previously unidentified sick sinus syndrome susceptibility gene, MYH6, encoding the alpha heavy chain subunit of cardiac myosin. A missense variant in this gene, c.2161C>T, results in the conceptual amino acid substitution p.Arg721Trp, has an allelic frequency of 0.38% in Icelanders and associates with sick sinus syndrome with an odds ratio = 1 2.53 and P = 1.5 × 10−29. We show that the lifetime risk of being diagnosed with sick sinus syndrome is around 6% for non-carriers of c.2161C>T but is approximately 50% for carriers of the c.2161C>T variant. PMID:21378987

Febuxostat hypersensitivity: another cause of DRESS syndrome in chronic kidney disease?

PubMed

Paschou, E; Gavriilaki, E; Papaioannou, G; Tsompanakou, A; Kalaitzoglou, A; Sabanis, N

2016-11-01

Febuxostat is a xanthine oxidase inhibitor that during the last years has successfully replaced allopurinol treatment in patients with chronic kidney disease (CKD) and hyperuricemia. Several adverse events have been observed during therapy with febuxostat. DRESS (Drug Reaction with Eosinophilia and Systemic Symptoms) syndrome induced by febuxostat has been poorly described, mainly in patient with CKD who previously developed allopurinol hypersensitivity syndrome. DRESS syndrome is characterized by manifold cutaneous reactions and systemic disorders with potential devastating consequences. The underlying pathogenetic mechanisms remain unidentified, though immune responses are often complicated. P-i concept can partially explain the phenomenon. The role of renal insufficiency appears to be crucial and further investigation is required. The present article describes the case of a CKD patient that developed febuxostat-related DRESS syndrome.

Occupational injuries due to violence.

PubMed

Hales, T; Seligman, P J; Newman, S C; Timbrook, C L

1988-06-01

Each year in the United States, an estimated 800 to 1,400 people are murdered at work, and an unknown number of nonfatal injuries due to workplace violence occur. Based on Ohio's workers' compensation claims from 1983 through 1985, police officers, gasoline service station employees, employees of the real estate industry, and hotel/motel employees were found to be at the highest risk for occupational violent crime (OVC) injury and death. Grocery store employees, specifically those working in convenience food stores, and employees of the real estate industry had the most reported rapes. Four previously unidentified industries at increased risk of employee victimization were described. Identification of industries and occupations at high risk for crime victimization provides the opportunity to focus preventive strategies to promote employee safety and security in the workplace.

A novel role for the Bombyx Slbo homologue, BmC/EBP, in insect choriogenesis.

PubMed

Sourmeli, S; Papantonis, A; Lecanidou, R

2005-11-18

One previously unidentified cDNA clone coding for a C/EBP factor, BmC/EBP, was isolated from Bombyx mori follicular cells. This is the first time that a C/EBP factor has been isolated and characterized in Lepidoptera. We provide information concerning structural features and developmental specificity, as well as in vitro interaction properties with chorion gene promoter modules. BmC/EBP was capable of effectively recognizing homologous binding sites from chorion gene promoters derived from flies and other moths, despite significant diversity of chorion structure, gene organization, and gene expression profiles. We propose that the relative concentration of BmC/EBP, in relation to its differential binding affinity for promoter cis-elements, results in activation or repression of silkmoth chorion gene expression.

Unbiased phosphoproteomic method identifies the initial effects of a methacrylic acid copolymer on macrophages

PubMed Central

Chamberlain, Michael Dean; Wells, Laura A.; Lisovsky, Alexandra; Guo, Hongbo; Isserlin, Ruth; Talior-Volodarsky, Ilana; Mahou, Redouan; Emili, Andrew; Sefton, Michael V.

2015-01-01

An unbiased phosphoproteomic method was used to identify biomaterial-associated changes in the phosphorylation patterns of macrophage-like cells. The phosphorylation differences between differentiated THP1 (dTHP1) cells treated for 10, 20, or 30 min with a vascular regenerative methacrylic acid (MAA) copolymer or a control methyl methacrylate (MM) copolymer were determined by MS. There were 1,470 peptides (corresponding to 729 proteins) that were differentially phosphorylated in dTHP1 cells treated with the two materials with a greater cellular response to MAA treatment. In addition to identifying pathways (such as integrin signaling and cytoskeletal arrangement) that are well known to change with cell–material interaction, previously unidentified pathways, such as apoptosis and mRNA splicing, were also discovered. PMID:26261332

Symmetrization in jellyfish: reorganization to regain function, and not lost parts.

PubMed

Abrams, Michael J; Goentoro, Lea

2016-02-01

We recently reported a previously unidentified strategy of self-repair in the moon jellyfish Aurelia aurita. Rather than regenerating lost parts, juvenile Aurelia reorganize remaining parts to regain essential body symmetry. This process that we called symmetrization is rapid and frequent, and is not driven by cell proliferation or cell death. Instead, the swimming machinery generates mechanical forces that drive symmetrization. We found evidence for symmetrization across three other species of jellyfish (Chrysaora pacifica, Mastigias sp., and Cotylorhiza tuberculata). We propose reorganization to regain function without recovery of initial morphology as a potentially broad class of self-repair strategy beyond radially symmetrical animals, and discuss the implications of this finding on the evolution of self-repair strategies in animals. Copyright © 2015 The Authors. Published by Elsevier GmbH.. All rights reserved.

Redescriptions of three trachelocercid ciliates (Protista, Ciliophora, Karyorelictea), with notes on their phylogeny based on small subunit rRNA gene sequences.

PubMed

Yan, Ying; Xu, Yuan; Yi, Zhenzhen; Warren, Alan

2013-09-01

Three trachelocercid ciliates, Kovalevaia sulcata (Kovaleva, 1966) Foissner, 1997, Trachelocerca sagitta (Müller, 1786) Ehrenberg, 1840 and Trachelocerca ditis (Wright, 1982) Foissner, 1996, isolated from two coastal habitats at Qingdao, China, were investigated using live observation and silver impregnation methods. Data on their infraciliature and morphology are supplied. The small subunit rRNA (SSU rRNA) genes of K. sulcata and Trachelocerca sagitta were sequenced for the first time. Phylogenetic analyses based on SSU rRNA gene sequence data indicate that both organisms, and the previously sequenced Trachelocerca ditis, are located within the trachelocercid assemblage and that K. sulcata is sister to an unidentified taxon forming a clade that is basal to the core trachelocercids.

Communications device identification methods, communications methods, wireless communications readers, wireless communications systems, and articles of manufacture

DOEpatents

Steele, Kerry D [Kennewick, WA; Anderson, Gordon A [Benton City, WA; Gilbert, Ronald W [Morgan Hill, CA

2011-02-01

Communications device identification methods, communications methods, wireless communications readers, wireless communications systems, and articles of manufacture are described. In one aspect, a communications device identification method includes providing identification information regarding a group of wireless identification devices within a wireless communications range of a reader, using the provided identification information, selecting one of a plurality of different search procedures for identifying unidentified ones of the wireless identification devices within the wireless communications range, and identifying at least some of the unidentified ones of the wireless identification devices using the selected one of the search procedures.

VIM-positive Pseudomonas aeruginosa in a large tertiary care hospital: matched case-control studies and a network analysis.

PubMed

Voor In 't Holt, Anne F; Severin, Juliëtte A; Hagenaars, Margot B H; de Goeij, Inge; Gommers, Diederik; Vos, Margreet C

2018-01-01

Emergence of multidrug-resistant Pseudomonas aeruginosa is of global concern. We aimed to identify epidemiological relationships, the most common way of transmission, and risk factors for presence of Verona Integron-encoded Metallo-β-lactamase (VIM)-positive P. aeruginosa (VIM-PA). We conducted a network analysis and matched case-control studies (1:2:2). Controls were hospital-based and matched with cases for ward, day of admission (control group 1 and 2) and time between admission and the identification of VIM-PA (control group 1). The network was visualized using Cytoscape, and risk factors were determined using conditional logistic regression. Between August 2003 and April 2015, 144 case patients and 576 control patients were recruited. We identified 307 relationships in 114 out of these 144 patients, with most relationships (84.7%) identified at the same department < 3 months after a previous case patient was discharged. In the multivariable model, having undergone ≥1 gastroscopy (odds ratio [OR] = 4.40, 95% confidence interval [CI] = 2.00 to 9.65 and OR = 2.47; 95% CI = 1.12 to 5.49), > 10 day use of selective digestive tract decontamination (SDD) (OR = 2.97; 95% CI = 1.02 to 8.68 and OR = 4.61; 95% CI = 1.22 to 17.37), and use of quinolones (OR = 3.29; 95% CI = 1.34 to 8.10 and OR = 3.95; 95% CI = 1.13 to 13.83 and OR = 4.47; 95% CI = 1.75 to 11.43) were identified as risk factors when using both control groups. The network analysis indicated that the majority of transmissions occurred on the wards, but through unidentified and presumably persistent sources, which are most likely in the innate hospital environment. Previous use of certain antibiotic regimens made patients prone to VIM-PA carriage. Additionally, gastroscopy could be considered as a high-risk procedure in patients with risk factors. Our results add to the growing body of evidence that infection control measures targeting VIM-PA should be focused on reducing antibiotics and eliminating sources in the environment.

Next generation offline approaches to trace organic compound speciation: Approaching comprehensive speciation with soft ionization and very high resolution tandem mass spectrometry

NASA Astrophysics Data System (ADS)

Khare, P.; Marcotte, A.; Sheu, R.; Ditto, J.; Gentner, D. R.

2017-12-01

Intermediate- and semi-volatile organic compounds (IVOCs and SVOCs) have high secondary organic aerosol (SOA) yields, as well as significant ozone formation potentials. Yet, their emission sources and oxidation pathways remain largely understudied due to limitations in current analytical capabilities. Online mass spectrometers are able to collect real time data but their limited mass resolving power renders molecular level characterization of IVOCs and SVOCs from the unresolved complex mixture unfeasible. With proper sampling techniques and powerful analytical instrumentation, our offline tandem mass spectrometry (i.e. MS×MS) techniques provide molecular-level and structural identification over wide polarity and volatility ranges. We have designed a novel analytical system for offline analysis of gas-phase SOA precursors collected on custom-made multi-bed adsorbent tubes. Samples are desorbed into helium via a gradual temperature ramp and sample flow is split equally for direct-MS×MS analysis and separation via gas chromatography (GC). The effluent from GC separation is split again for analysis via atmospheric pressure chemical ionization quadrupole time-of-flight mass spectrometry (APCI-Q×TOF) and traditional electron ionization mass spectrometry (EI-MS). The compounds for direct-MS×MS analysis are delivered via a transfer line maintained at 70ºC directly to APCI-Q×TOF, thus preserving the molecular integrity of thermally-labile, or other highly-reactive, organic compounds. Both our GC-MS×MS and direct-MS×MS analyses report high accuracy parent ion masses as well as information on molecular structure via MS×MS, which together increase the resolution of unidentified complex mixtures. We demonstrate instrument performance and present preliminary results from urban atmospheric samples collected from New York City with a wide range of compounds including highly-functionalized organic compounds previously understudied in outdoor air. Our work offers new insights into emerging emission sources in urban environments that can have a major impact on public health and also improves understanding of anthropogenic SOA precursor emissions.

HST WFC3 Early Release Science: Emission-Line Galaxies from IR Grism Observations

NASA Technical Reports Server (NTRS)

Straughn, A. N.; Kuntschner, H.; Kuemmel, M.; Walsh, J. R.; Cohen, S. H.; Gardner, J. P.; Windhorst, R. A.; O'Connell, R. W.; Pirzkal, N.; Meurer, G.;

Possible Food Sources of Macrozoobenthos in the Manko Mangrove Ecosystem, Okinawa (Japan): A Stable Isotope Analysis Approach

PubMed Central

Wardiatno, Yusli; Mardiansyah; Prartono, Tri; Tsuchiya, Makoto

2015-01-01

Identifying potential food sources in mangrove ecosystems is complex because of the multifarious inputs from both land and sea. This study, which was conducted in the Manko mangrove ecosystem of Okinawa, Japan, determined the composition of the stable isotopes δ13C and δ15N in primary producers and macrozoobenthos to estimate the potential food sources assimilated and to elucidate the target trophic levels of the macrozoobenthos. We measured the two stable isotope signatures of three gastropods (Cerithidea sp., Cassidula mustelina, Peronia verruculata), two crabs (Grapsidae sp., Uca sp.), mangrove tree (Kandelia candel) leaves, and sediment from the mangrove ecosystem. The respective carbon and nitrogen isotope signature results were as follows: −22.4‰ and 8.6‰ for Cerithidea sp., −25.06‰ and 8‰ for C. mustelina, −22.58‰ and 8‰ for P. verruculata, −24.3‰ and 10.6‰ for unidentified Grapsidae, −21.87 ‰ and 11.5 ‰ for Uca sp., −29.81‰ and 11‰ for K. candel, and −24.23‰ and 7.2‰ for the sediment. The stable isotope assimilation signatures of the macrozoobenthos indicated sediment as their food source. Considering the trophic levels, the stable isotope values may also indicate that the five macrozoobenthos species were secondary or higher consumers. PMID:26019747

Threshold magnitudes for a multichannel correlation detector in background seismicity

DOE PAGES

Carmichael, Joshua D.; Hartse, Hans

2016-04-01

Colocated explosive sources often produce correlated seismic waveforms. Multichannel correlation detectors identify these signals by scanning template waveforms recorded from known reference events against "target" data to find similar waveforms. This screening problem is challenged at thresholds required to monitor smaller explosions, often because non-target signals falsely trigger such detectors. Therefore, it is generally unclear what thresholds will reliably identify a target explosion while screening non-target background seismicity. Here, we estimate threshold magnitudes for hypothetical explosions located at the North Korean nuclear test site over six months of 2010, by processing International Monitoring System (IMS) array data with a multichannelmore » waveform correlation detector. Our method (1) accounts for low amplitude background seismicity that falsely triggers correlation detectors but is unidentifiable with conventional power beams, (2) adapts to diurnally variable noise levels and (3) uses source-receiver reciprocity concepts to estimate thresholds for explosions spatially separated from the template source. Furthermore, we find that underground explosions with body wave magnitudes m b = 1.66 are detectable at the IMS array USRK with probability 0.99, when using template waveforms consisting only of P -waves, without false alarms. We conservatively find that these thresholds also increase by up to a magnitude unit for sources located 4 km or more from the Feb.12, 2013 announced nuclear test.« less

Expression of NADPH Oxidase Isoform 1 (Nox1) in Human Placenta: Involvement in Preeclampsia

PubMed Central

Cui, X.-L.; Brockman, D.; Campos, B.; Myatt, L.

2010-01-01

Increased oxidative stress in the placenta has been associated with preeclampsia (PE), a clinical syndrome involving placental pathology. The enzymatic sources of reactive oxygen species in the human placenta are as yet unidentified. We hypothesized that NADPH oxidase is a main source of reactive oxygen species in the placenta and its expression may change in PE. Employing RTPCR, we have amplified a novel NADPH oxidase isoform Nox1 from human choriocarcinoma BeWo cells. Using polyclonal anti-peptide antiserum recognizing unique Nox1 peptide sequences, we identified by immunohistochemistry and cell fractionation that Nox1 protein localizes in the BeWo cell membrane structures. Immunohistochemistry of normal placental tissues showed that Nox1 was localized in syncytiotrophoblasts, in villous vascular endothelium, and in some stromal cells. At the immunohistochemical level Nox1 expression was significantly increased in syncytiotrophoblast and endothelial cells in placentas from patients with preeclampsia as compared to gestational age-matched controls. Western blot analysis of whole placental homogenate confirmed this increase. Our data suggests that increased Nox1 expression is associated with the increased oxidative stress found in these placentas. PMID:15993942

Increased risk for Campylobacter jejuni and C. coli infection of pet origin in dog owners and evidence for genetic association between strains causing infection in humans and their pets.

PubMed

Mughini Gras, L; Smid, J H; Wagenaar, J A; Koene, M G J; Havelaar, A H; Friesema, I H M; French, N P; Flemming, C; Galson, J D; Graziani, C; Busani, L; VAN Pelt, W

2013-12-01

We compared Campylobacter jejuni/coli multilocus sequence types (STs) from pets (dogs/cats) and their owners and investigated risk factors for pet-associated human campylobacteriosis using a combined source-attribution and case-control analysis. In total, 132/687 pet stools were Campylobacter-positive, resulting in 499 strains isolated (320 C. upsaliensis/helveticus, 100 C. jejuni, 33 C. hyointestinalis/fetus, 10 C. lari, 4 C. coli, 32 unidentified). There were 737 human and 104 pet C. jejuni/coli strains assigned to 154 and 49 STs, respectively. Dog, particularly puppy, owners were at increased risk of infection with pet-associated STs. In 2/68 cases vs. 0.134/68 expected by chance, a pet and its owner were infected with an identical ST (ST45, ST658). Although common sources of infection and directionality of transmission between pets and humans were unknown, dog ownership significantly increased the risk for pet-associated human C. jejuni/coli infection and isolation of identical strains in humans and their pets occurred significantly more often than expected.

Millisecond Pulsars at Gamma-Ray Energies: Fermi Detections and Implications

NASA Technical Reports Server (NTRS)

Harding, Alice K.

2011-01-01

The Fermi Gamma-Ray Space Telescope has revolutionized the study of pulsar physics with the discovery of new populations of radio quiet and millisecond gamma-ray pulsars. The Fermi Large Area Telescope has so far discovered approx.20 new gamma-ray millisecond pulsars (MSPs) by both folding at periods of known radio MSPs or by detecting them as gamma-ray sources that are followed up by radio pulsar searches. The second method has resulted in a phenomenally successful synergy, with -30 new radio MSPs (to date) having been discovered at Fermi unidentified source locations and the gamma-ray pulsations having then been detected in a number of these using the radio timing solutions. Many of the newly discovered MSPs may be suitable for addition to the collection of very stable MSPs used for gravitational wave detection. Detection of such a large number of MSPs was surprising, given that most have relatively low spin-down luminosity and surface field strength. I will discuss their properties and the implications for pulsar particle acceleration and emission, as well as their potential contribution to gamma-ray backgrounds and Galactic cosmic rays.

Analysis of the Effect of Prevailing Weather Conditions on the Occurrence of Grain Dust Explosions.

PubMed

Sanghi, Achint; Ambrose, R P Kingsly

2016-07-27

Grain dust explosions have been occurring in the U.S. for the past twenty years. In the past ten years, there have been an average of ten explosions a year, resulting in nine fatalities and 93 injuries. In more than half of these cases, the ignition source remains unidentified. The effect of ambient humidity on the likelihood of a dust explosion has been discussed for many years. However, no investigation into a possible link between the two has been carried out. In this study, we analyzed local weather data and grain dust explosions during the period 2006 to 2014 to measure potential relationships between the two events. The 84 analyzed explosions do not show any trend with regard to prevailing temperatures, or relative or absolute humidity. In addition, the ignition source could not be identified in 54 of the incidents. The majority of grain dust explosion incidents occurred at grain elevator facilities, where the dust generation potential was high compared with grain processing industries. Copyright© by the American Society of Agricultural Engineers.

Comprehensive Characterization of Extractable and Nonextractable Phenolic Compounds by High-Performance Liquid Chromatography-Electrospray Ionization-Quadrupole Time-of-Flight of a Grape/Pomegranate Pomace Dietary Supplement.

PubMed

Pérez-Ramírez, Iza F; Reynoso-Camacho, Rosalía; Saura-Calixto, Fulgencio; Pérez-Jiménez, Jara

2018-01-24

Grape and pomegranate are rich sources of phenolic compounds, and their derived products could be used as ingredients for the development of functional foods and dietary supplements. However, the profile of nonextractable or macromolecular phenolic compounds in these samples has not been evaluated. Here, we show a comprehensive characterization of extractable and nonextractable phenolic compounds of a grape/pomegranate pomace dietary supplement using high-performance liquid chromatography-electrospray ionization-quadrupole time-of-flight (HPLC-ESI-QTOF) and matrix-assisted laser desorption/ionization (MALDI)-TOF techniques. The main extractable phenolic compounds were several anthocyanins (principally malvidin 3-O-glucoside) as well as gallotannins and gallagyl derivatives; some phenolic compounds were reported in grape or pomegranate for the first time. Additionally, there was a high proportion of nonextractable phenolic compounds, including vanillic acid, and dihydroxybenzoic acid. Unidentified polymeric structures were detected by MALDI-TOF MS analysis. This study shows that mixed grape and pomegranate pomaces are a source of different classes of phenolic compounds including a high proportion of nonextractable phenolic compounds.

Exome sequencing analysis reveals variants in primary immunodeficiency genes in patients with very early onset inflammatory bowel disease.

PubMed

Kelsen, Judith R; Dawany, Noor; Moran, Christopher J; Petersen, Britt-Sabina; Sarmady, Mahdi; Sasson, Ariella; Pauly-Hubbard, Helen; Martinez, Alejandro; Maurer, Kelly; Soong, Joanne; Rappaport, Eric; Franke, Andre; Keller, Andreas; Winter, Harland S; Mamula, Petar; Piccoli, David; Artis, David; Sonnenberg, Gregory F; Daly, Mark; Sullivan, Kathleen E; Baldassano, Robert N; Devoto, Marcella

2015-11-01

Very early onset inflammatory bowel disease (VEO-IBD), IBD diagnosed at 5 years of age or younger, frequently presents with a different and more severe phenotype than older-onset IBD. We investigated whether patients with VEO-IBD carry rare or novel variants in genes associated with immunodeficiencies that might contribute to disease development. Patients with VEO-IBD and parents (when available) were recruited from the Children's Hospital of Philadelphia from March 2013 through July 2014. We analyzed DNA from 125 patients with VEO-IBD (age, 3 wk to 4 y) and 19 parents, 4 of whom also had IBD. Exome capture was performed by Agilent SureSelect V4, and sequencing was performed using the Illumina HiSeq platform. Alignment to human genome GRCh37 was achieved followed by postprocessing and variant calling. After functional annotation, candidate variants were analyzed for change in protein function, minor allele frequency less than 0.1%, and scaled combined annotation-dependent depletion scores of 10 or less. We focused on genes associated with primary immunodeficiencies and related pathways. An additional 210 exome samples from patients with pediatric IBD (n = 45) or adult-onset Crohn's disease (n = 20) and healthy individuals (controls, n = 145) were obtained from the University of Kiel, Germany, and used as control groups. Four hundred genes and regions associated with primary immunodeficiency, covering approximately 6500 coding exons totaling more than 1 Mbp of coding sequence, were selected from the whole-exome data. Our analysis showed novel and rare variants within these genes that could contribute to the development of VEO-IBD, including rare heterozygous missense variants in IL10RA and previously unidentified variants in MSH5 and CD19. In an exome sequence analysis of patients with VEO-IBD and their parents, we identified variants in genes that regulate B- and T-cell functions and could contribute to pathogenesis. Our analysis could lead to the identification of previously unidentified IBD-associated variants. Copyright © 2015 AGA Institute. Published by Elsevier Inc. All rights reserved.

Molecular and conventional analyses of microbial diversity in mesophilic and thermophilic upflow anaerobic sludge blanket granular sludges.

PubMed

Sekiguchi, Y; Kamagata, Y; Ohashi, A; Harada, H

2002-01-01

The microbial community structure of mesophilic (35 degrees C) and thermophilic (55 degrees C) methanogenic granular sludges was surveyed by using both cultivation-independent molecular approach and conventional cultivation technique in order to address the fundamental questions on the microbial populations, i.e. who are present, where they are located, and what they are doing there. To elucidate the microbial constituents within both sludges, we first constructed 16S ribosomal DNA clone libraries, and partial sequencing of the clones was conducted for phylogenetic analysis. In this experiment, we found a number of unidentifiable clones within the domain Bacteria as well as clones that were closely related with 16S rDNAs of cultured microbes. The unidentifiable clones accounted for approximately 60-70% of the total clones in both mesophilic and thermophilic libraries. 16S rRNA-targeted in situ hybridization combined with confocal laser scanning microscopy was subsequently employed to examine where the uncultured populations were located within sludge granules. Spatial organization of uncultured microbes was visualized in thin-sections of both types of granules using fluorescent oligonucleotide probes, which were designed based on the clone sequences of certain novel clusters. This resulted in the detection of two types of uncultured cells in specific locations inside the granules. Finally, the goal-directed conventional cultivation technique was employed to recover such uncultured anaerobes and uncover their physiology and functions. In this approach, a total of five new species of thermophilic microorganisms were isolated, including several types of syntrophs and a novel sugar-fermenting bacterium. In the previous molecular approaches, all of these isolates were suggested to be significant populations within thermophilic granular sludge, hence obtaining these isolates in pure culture decreased the fraction of unknown clones in the previous thermophilic clone library from 70% to 40%. In conclusion, these approaches successfully revealed biodiversity and spatial organization of microbes of interest in sludge granules, and enlarged the fundamental knowledge of microbial constituents functioning as significant populations in the UASB processes.

A subset of high Gleason grade prostate carcinomas contain a large burden of prostate cancer syndecan-1 positive stromal cells.

PubMed

Sharpe, Benjamin; Alghezi, Dhafer A; Cattermole, Claire; Beresford, Mark; Bowen, Rebecca; Mitchard, John; Chalmers, Andrew D

2017-05-01

There is a pressing need to identify prognostic and predictive biomarkers for prostate cancer to aid treatment decisions in both early and advanced disease settings. Syndecan-1, a heparan sulfate proteoglycan, has been previously identified as a potential prognostic biomarker by multiple studies at the tissue and serum level. However, other studies have questioned its utility. Anti-Syndecan-1 immunohistochemistry was carried out on 157 prostate tissue samples (including cancerous, adjacent normal tissue, and non-diseased prostate) from three independent cohorts of patients. A population of Syndecan-1 positive stromal cells was identified and the number and morphological parameters of these cells quantified. The identity of the Syndecan-1-positive stromal cells was assessed by multiplex immunofluorescence using a range of common cell lineage markers. Finally, the burden of Syndecan-1 positive stromal cells was tested for association with clinical parameters. We identified a previously unreported cell type which is marked by Syndecan-1 expression and is found in the stroma of prostate tumors and adjacent normal tissue but not in non-diseased prostate. We call these cells Prostate Cancer Syndecan-1 Positive (PCSP) cells. Immunofluorescence analysis revealed that the PCSP cell population did not co-stain with markers of common prostate epithelial, stromal, or immune cell populations. However, morphological analysis revealed that PCSP cells are often elongated and displayed prominent lamellipodia, suggesting they are an unidentified migratory cell population. Analysis of clinical parameters showed that PCSP cells were found with a frequency of 20-35% of all tumors evaluated, but were not present in non-diseased normal tissue. Interestingly, a subset of primary Gleason 5 prostate tumors had a high burden of PCSP cells. The current study identifies PCSP cells as a novel, potentially migratory cell type, which is marked by Syndecan-1 expression and is found in the stroma of prostate carcinomas, adjacent normal tissue, but not in non-diseased prostate. A subset of poor prognosis high Gleason grade 5 tumors had a particularly high PCSP cell burden, suggesting an association between this unidentified cell type and tumor aggressiveness. © 2017 Wiley Periodicals, Inc.

Spectroscopic classification of X-ray sources in the Galactic Bulge Survey

NASA Astrophysics Data System (ADS)

Wevers, T.; Torres, M. A. P.; Jonker, P. G.; Nelemans, G.; Heinke, C.; Mata Sánchez, D.; Johnson, C. B.; Gazer, R.; Steeghs, D. T. H.; Maccarone, T. J.; Hynes, R. I.; Casares, J.; Udalski, A.; Wetuski, J.; Britt, C. T.; Kostrzewa-Rutkowska, Z.; Wyrzykowski, Ł.

2017-10-01

We present the classification of 26 optical counterparts to X-ray sources discovered in the Galactic Bulge Survey. We use (time-resolved) photometric and spectroscopic observations to classify the X-ray sources based on their multiwavelength properties. We find a variety of source classes, spanning different phases of stellar/binary evolution. We classify CX21 as a quiescent cataclysmic variable (CV) below the period gap, and CX118 as a high accretion rate (nova-like) CV. CXB12 displays excess UV emission, and could contain a compact object with a giant star companion, making it a candidate symbiotic binary or quiescent low-mass X-ray binary (although other scenarios cannot be ruled out). CXB34 is a magnetic CV (polar) that shows photometric evidence for a change in accretion state. The magnetic classification is based on the detection of X-ray pulsations with a period of 81 ± 2 min. CXB42 is identified as a young stellar object, namely a weak-lined T Tauri star exhibiting (to date unexplained) UX Ori-like photometric variability. The optical spectrum of CXB43 contains two (resolved) unidentified double-peaked emission lines. No known scenario, such as an active galactic nucleus or symbiotic binary, can easily explain its characteristics. We additionally classify 20 objects as likely active stars based on optical spectroscopy, their X-ray to optical flux ratios and photometric variability. In four cases we identify the sources as binary stars.

The host outer membrane proteins OmpA and OmpC are associated with the Shigella phage Sf6 virion

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhao Haiyan, E-mail: zhaohy@ku.ed; Sequeira, Reuben D., E-mail: sequen@ku.ed; Galeva, Nadezhda A., E-mail: galeva@ku.ed

2011-01-20

Assembly of dsDNA bacteriophage is a precisely programmed process. Potential roles of host cell components in phage assembly haven't been well understood. It was previously reported that two unidentified proteins were present in bacteriophage Sf6 virion (Casjens et al, 2004, J.Mol.Biol. 339, 379-394, Fig. 2A). Using tandem mass spectrometry, we have identified the two proteins as outer membrane proteins (OMPs) OmpA and OmpC from its host Shigella flexneri. The transmission electron cryo-microscopy structure of Sf6 shows significant density at specific sites at the phage capsid inner surface. This density fit well with the characteristic beta-barrel domains of OMPs, thus maymore » be due to the two host proteins. Locations of this density suggest a role in Sf6 morphogenesis reminiscent of phage-encoded cementing proteins. These data indicate a new, OMP-related phage:host linkage, adding to previous knowledge that some lambdoid bacteriophage genomes contain OmpC-like genes that express phage-encoded porins in the lysogenic state.« less

Identification of a novel mutation in the paired domain of PAX3 in an Iranian family with waardenburg syndrome type I.

PubMed

Sotirova, V N; Rezaie, T M; Khoshsorour, M M; Sarfarazi, M

2000-03-01

Waardenburg syndrome Type I (WS1) is an autosomal dominant disorder that has previously been associated with mutations in the PAX3 gene on the 2q35 region. In this study, we used an Iranian WS1 family with seven affected individuals in three generations. The phenotypic characteristics of the family include sensorineural deafness, dystopia canthorum, hypopigmented skin patches of the upper limbs, congenital white forelock, confluent white eyebrows, nonpigmented iris, poliosis, and hypopigmentation of the retina. Herein, we report a previously unidentified single-base substitution in exon II (C-->T at position 218) that results in a change of serine to leucine (S73L) in this family. This change was not observed in 100 chromosomes of healthy unrelated individuals. This mutation is within the PAX3 paired domain region, a structure that is highly conserved and implicated in DNA binding. This is the first identification of a PAX3 mutation for this phenotype in the Iranian population. This also provides additional confirmation for the involvement of this gene in the etiology of WS1.

Two distinct auto-regulatory loops operate at the PU.1 locus in B cells and myeloid cells

PubMed Central

Leddin, Mathias; Perrod, Chiara; Hoogenkamp, Maarten; Ghani, Saeed; Assi, Salam; Heinz, Sven; Wilson, Nicola K.; Follows, George; Schönheit, Jörg; Vockentanz, Lena; Mosammam, Ali M.; Chen, Wei; Tenen, Daniel G.; Westhead, David R.; Göttgens, Berthold

2011-01-01

The transcription factor PU.1 occupies a central role in controlling myeloid and early B-cell development, and its correct lineage-specific expression is critical for the differentiation choice of hematopoietic progenitors. However, little is known of how this tissue-specific pattern is established. We previously identified an upstream regulatory cis element whose targeted deletion in mice decreases PU.1 expression and causes leukemia. We show here that the upstream regulatory cis element alone is insufficient to confer physiologic PU.1 expression in mice but requires the cooperation with other, previously unidentified elements. Using a combination of transgenic studies, global chromatin assays, and detailed molecular analyses we present evidence that PU.1 is regulated by a novel mechanism involving cross talk between different cis elements together with lineage-restricted autoregulation. In this model, PU.1 regulates its expression in B cells and macrophages by differentially associating with cell type–specific transcription factors at one of its cis-regulatory elements to establish differential activity patterns at other elements. PMID:21239694

Novel Mutations in the ZEB1 Gene Identified in Czech and British Patients With Posterior Polymorphous Corneal Dystrophy

PubMed Central

Liskova, Petra; Tuft, Stephen J.; Gwilliam, Rhian; Ebenezer, Neil D.; Jirsova, Katerina; Prescott, Quincy; Martincova, Radka; Pretorius, Marike; Sinclair, Neil; Boase, David L.; Jeffrey, Margaret J.; Deloukas, Panos; Hardcastle, Alison J.; Filipec, Martin; Bhattacharya, Shomi S.

2009-01-01

We describe the search for mutations in six unrelated Czech and four unrelated British families with posterior polymorphous corneal dystrophy (PPCD); a relatively rare eye disorder. Coding exons and intron/exon boundaries of all three genes (VSX1, COL8A2, and ZEB1/TCF8) previously reported to be implicated in the pathogenesis of this disorder were screened by DNA sequencing. Four novel pathogenic mutations were identified in four families; two deletions, one nonsense, and one duplication within exon 7 in the ZEB1 gene located at 10p11.2. We also genotyped the Czech patients to test for a founder haplotype and lack of disease segregation with the 20p11.2 locus we previously described. Although a systematic clinical examination was not performed, our investigation does not support an association between ZEB1 changes and self reported non-ocular anomalies. In the remaining six families no disease causing mutations were identified thereby indicating that as yet unidentified gene(s) are likely to be responsible for PPCD. PMID:17437275

The 1943 K emission spectrum of H216O between 6600 and 7050 cm-1

NASA Astrophysics Data System (ADS)

Czinki, Eszter; Furtenbacher, Tibor; Császár, Attila G.; Eckhardt, André K.; Mellau, Georg Ch.

2018-02-01

An emission spectrum of H216O has been recorded, with Doppler-limited resolution, at 1943 K using Hot Gas Molecular Emission (HOTGAME) spectroscopy. The wavenumber range covered is 6600 to 7050 cm-1. This work reports the analysis and subsequent assignment of close to 3700 H216O transitions out of a total of more than 6700 measured peaks. The analysis is based on the Measured Active Rotational-Vibrational Energy Levels (MARVEL) energy levels of H216O determined in 2013 and emission line intensities obtained from accurate variational nuclear-motion computations. The analysis of the spectrum yields about 1300 transitions not measured previously and 23 experimentally previously unidentified rovibrational energy levels. The accuracy of the line positions and intensities used in the analysis was improved with the spectrum deconvolution software SyMath via creating a peak list corresponding to the dense emission spectrum. The extensive list of labeled transitions and the new experimental energy levels obtained are deposited in the Supplementary Material of this article as well as in the ReSpecTh (http://www.respecth.hu) information system.

Acentric chromosome ends are prone to fusion with functional chromosome ends through a homology-directed rearrangement

PubMed Central

Ohno, Yuko; Ogiyama, Yuki; Kubota, Yoshino; Kubo, Takuya; Ishii, Kojiro

2016-01-01

The centromeres of many eukaryotic chromosomes are established epigenetically on potentially variable tandem repeats; hence, these chromosomes are at risk of being acentric. We reported previously that artificially created acentric chromosomes in the fission yeast Schizosaccharomyces pombe can be rescued by end-to-end fusion with functional chromosomes. Here, we show that most acentric/functional chromosome fusion events in S. pombe cells harbouring an acentric chromosome I differed from the non-homologous end-joining-mediated rearrangements that result in deleterious dicentric fusions in normal cells, and were elicited by a previously unidentified homologous recombination (HR) event between chromosome end-associated sequences. The subtelomere repeats associated with the non-fusogenic ends were also destabilized in the surviving cells, suggesting a causal link between general subtelomere destabilization and acentric/functional chromosome fusion. A mutational analysis indicated that a non-canonical HR pathway was involved in the rearrangement. These findings are indicative of a latent mechanism that conditionally induces general subtelomere instability, presumably in the face of accidental centromere loss events, resulting in rescue of the fatal acentric chromosomes by interchromosomal HR. PMID:26433224

Airborne pollen survey in Bangkok, Thailand: A 35-year update.

PubMed

Songnuan, Wisuwat; Bunnag, Chaweewan; Soontrapa, Kitipong; Pacharn, Punchama; Wangthan, Unchalee; Siriwattanakul, Umaporn; Malainual, Nat

2015-09-01

Pollen allergy is a growing global health issue. While airborne pollen counts are reported daily in several countries, such information is lacking in Thailand. This study aimed to survey airborne pollens at five sites in Bangkok, comparing data with the previous study performed 35 years ago in 1980. Sample collection was done using the ROTOROD® sampler by exposing the rods for one hour each day twice a week from May 2012-April 2013. Overall, we found that the average pollen count was relatively high throughout the year, at an average of 242 grains/m3. The highest peak was found in September (700 grains/m3). Interestingly, we found that the pollen count was noticeably lower in 2012-2013 when compared to the 1980 study. We also observed the approximate shift of pollen peaks about one to two months earlier in the 2012-2013 study. However, the major groups of airborne pollens did not change significantly. Grass, sedge, amaranthus pollens and fern spores still dominated. The unidentified pollen group was the only group with a higher pollen count when compared to the previous study.