Detection of an electron beam in a high density plasma via an electrostatic probe

DOE Office of Scientific and Technical Information (OSTI.GOV)

Majeski, Stephen; Yoo, Jongsoo; Zweben, Stewart

Here, an electron beam is detected by a 1D floating potential probe array in a relatively high density (10 12–10 13 cm -3) and low temperature (~5 eV) plasma of the Magnetic Reconnection Experiment. Clear perturbations in the floating potential profile by the electron beam are observed. Based on the floating potential profile and a current balance equation to the probe array tips, the effective width of the electron beam is determined, from which we determine the radial and toroidal beam current density profiles. After the profile of the electron beam is specified from the measured beam current, we demonstratemore » the consistency of the current balance equation and the location of the perturbation is also in agreement with field line mapping. No significant broadening of the electron beam is observed after the beam propagates for tens of centimeters through the high density plasma. These results prove that the field line mapping is, in principle, possible in high density plasmas.« less

Detection of an electron beam in a high density plasma via an electrostatic probe

DOE PAGES

Majeski, Stephen; Yoo, Jongsoo; Zweben, Stewart; ...

2018-05-08

Here, an electron beam is detected by a 1D floating potential probe array in a relatively high density (10 12–10 13 cm -3) and low temperature (~5 eV) plasma of the Magnetic Reconnection Experiment. Clear perturbations in the floating potential profile by the electron beam are observed. Based on the floating potential profile and a current balance equation to the probe array tips, the effective width of the electron beam is determined, from which we determine the radial and toroidal beam current density profiles. After the profile of the electron beam is specified from the measured beam current, we demonstratemore » the consistency of the current balance equation and the location of the perturbation is also in agreement with field line mapping. No significant broadening of the electron beam is observed after the beam propagates for tens of centimeters through the high density plasma. These results prove that the field line mapping is, in principle, possible in high density plasmas.« less

Non-coincident Inter-instrument Comparisons of Ozone Measurements Using Quasi-conservative Coordinates

NASA Technical Reports Server (NTRS)

Lait, L. R.; Newman, P. A.; Schoeberl, M. R.; McGee, T.; Twigg, T.; Browell, E.; Bevilacqua, R.; Andersen, S. B.; DeBacker, H.; Benesova, A.

2004-01-01

Ozone measurements from ozonesondes, AROTAL, DIAL, and POAM III instruments during the SOLVE-2/VINTERSOL period are composited in a time-varying, flow-following quasi-conservative (PV-6) coordinate space; the resulting composites from each instrument are mapped onto the other instruments locations and times. The mapped data are then used to intercompare data from the different instruments. Overall, the four data sets are found to be in good agreement. AROTAL shows somewhat lower values below 16 km, and DIAL has a positive bias at the upper limits of its altitude range. These intercomparisons are consistent with those obtained from more conventional near-coincident profiles, where available. Although the PV-theta mapping technique entails larger uncertainties of individual profile differences compared to direct near-coincident comparisons, the ability to include much larger numbers of comparisons can make this technique advantageous.

Seismic, side-scan survey, diving, and coring data analyzed by a Macintosh II sup TM computer and inexpensive software provide answers to a possible offshore extension of landslides at Palos Verdes Peninsula, California

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dill, R.F.; Slosson, J.E.; McEachen, D.B.

1990-05-01

A Macintosh II{sup TM} computer and commercially available software were used to analyze and depict the topography, construct an isopach sediment thickness map, plot core positions, and locate the geology of an offshore area facing an active landslide on the southern side of Palos Verdes Peninsula California. Profile data from side scan sonar, 3.5 kHz, and Boomer subbottom, high-resolution seismic, diving, echo sounder traverses, and cores - all controlled with a mini Ranger II navigation system - were placed in MacGridzo{sup TM} and WingZ{sup TM} software programs. The computer-plotted data from seven sources were used to construct maps with overlaysmore » for evaluating the possibility of a shoreside landslide extending offshore. The poster session describes the offshore survey system and demonstrates the development of the computer data base, its placement into the MacGridzo{sup TM} gridding program, and transfer of gridded navigational locations to the WingZ{sup TM} data base and graphics program. Data will be manipulated to show how sea-floor features are enhanced and how isopach data were used to interpret the possibility of landslide displacement and Holocene sea level rise. The software permits rapid assessment of data using computerized overlays and a simple, inexpensive means of constructing and evaluating information in map form and the preparation of final written reports. This system could be useful in many other areas where seismic profiles, precision navigational locations, soundings, diver observations, and core provide a great volume of information that must be compared on regional plots to develop of field maps for geological evaluation and reports.« less

Floods of 1971 and 1972 on Glover Creek and Little River in southeastern Oklahoma

USGS Publications Warehouse

Thomas, Wilbert O.; Corley, Robert K.

1973-01-01

Heavy rains of December 9-10, 1971, and Oct. 30-31, 1972, caused outstanding floods on Glover Creek and Little River in McCurtain County in southeastern Oklahoma. This report presents hydrologic data that document the extent of flooding, flood profiles, and frequency of flooding on reaches of both streams. The data presented provide a technical basis for formulating effective flood-plain zoning that will minimize existing and future flood problems. The report also can be useful for locating waste-disposal and water-treatment facilities, and for the development of recreational areas. The area studied includes the reach of Little River on the Garvin and Idabel 7 1/2-minute quadrangles (sheet 1) and the reach of Glover Creek on the southwest quarter of the Golden 15-minute quadrangle (sheet 2). The flood boundaries delineated on the maps are the limits of flooding during the December 1971 and October 1972 floods. Any attempt to delineate the flood boundaries on streams in the study area other than Glover Creek and Little River was considered to be beyond the scope of this report. The general procedure used in defining the flood boundaries was to construct the flood profiles from high-water marks obtained by field surveys and by records at three stream-gaging stations (two on Little River and one on Glover Creek.). The extent of flooding was delineated on the topographic maps by using the flood profiles to define the flood elevations at various points along the channel and locating the elevations on the map by interpolating between contours (lines of equal ground elevation). In addition, flood boundaries were defined in places by field survey, aerial photographs, and information from local residents. The accuracy of the flood boundaries is consistent with the scale and contour interval of the maps (1 inch = 2,000 feet; contour interval 10 and 20 feet), which means the flood boundaries are drawn as accurately as possible on maps having 10- and 20-foot contour intervals.

NASA satellite helps airliners avoid ozone concentrations

NASA Technical Reports Server (NTRS)

1981-01-01

Results from a test to determine the effectiveness of satellite data for helping airlines avoid heavy concentrations of ozone are reported. Information from the Total Ozone Mapping Spectrometer, aboard the Nimbus-7 was transmitted, for use in meteorological forecast activities. The results show: (1) Total Ozone Mapping Spectrometer profile of total ozone in the atmosphere accurately represents upper air patterns and can be used to locate meteorological activity; (2) route forecasting of highly concentrated ozone is feasible; (3) five research aircraft flights were flown in jet stream regions located by the Total Ozone Mapping Spectrometer to determine winds, temperatures, and air composition. It is shown that the jet stream is coincides with the area of highest total ozone gradient, and low total ozone amounts are found where tropospheric air has been carried along above the tropopause on the anticyclonic side of the subtropical jet stream.

Integrating proximal soil sensing techniques and terrain indexes to generate 3D maps of soil restrictive layers in the Palouse region, Washington, USA

NASA Astrophysics Data System (ADS)

Poggio, Matteo; Brown, David J.; Gasch, Caley K.; Brooks, Erin S.; Yourek, Matt A.

2015-04-01

In the Palouse region of eastern Washington and northern Idaho (USA), spatially discontinuous restrictive layers impede rooting growth and water infiltration. Consequently, accurate maps showing the depth and spatial extent of these restrictive layers are essential for watershed hydrologic modeling appropriate for precision agriculture. In this presentation, we report on the use of a Visible and Near-Infrared (VisNIR) penetrometer fore optic to construct detailed maps of three wheat fields in the Palouse region. The VisNIR penetrometer was used to deliver in situ soil reflectance to an Analytical Spectral Devices (ASD, Boulder, CO, USA) spectrometer and simultaneously acquire insertion force. With a hydraulic push-type soil coring systems for insertion (e.g. Giddings), we collected soil spectra and insertion force data along 41m x 41m grid points (2 fields) and 50m x 50m grid points (1 field) to ≈80cm depth, in addition to interrogation points at 36 representative instrumented locations per field. At each of the 36 instrumented locations, two soil cores were extracted for laboratory determination of clay content and bulk density. We developed calibration models of soil clay content and bulk density with spectra and insertion force collected in situ, using partial least squares regression 2 (PLSR2). Applying spline functions, we delineated clay and bulk density profiles at each points (grid and 24 locations). The soil profiles were then used as inputs in a regression-kriging model with terrain indexes and ECa data (derived from an EM38 field survey, Geonics, Mississauga, Ontario, Canada) as covariates to generate 3D soil maps. Preliminary results show that the VisNIR penetrometer can capture the spatial patterns of restrictive layers. Work is ongoing to evaluate the prediction accuracy of penetrometer-derived 3D clay content and restriction layer maps.

Map showing locations and statistical parameters of beach and offshore sand samples, Tutuila Island, American Samoa

USGS Publications Warehouse

Dingler, J.R.; Carlson, D.V.; Sallenger, A.H.

1987-01-01

In April 1985, sand samples were collected from many of the beaches on Tutuila Island, American Samoa, and in July 1985, three bays were surveyed using side-scan sonar and shallow seismic profiling. During that second trip, scuba divers collected sand samples from the surveyed areas. Dingler and others (1986) describes the study; this report presents the grain-size and composition data for the onshore and offshore sand samples. Locations of the onshore samples are plotted on the map of the island, which is reproduced from Normark and others (1985); locations of most of the offshore samples and side-scan sonar interpretations made during the study are plotted on enlargements (A and B, respectively) of Fagaitua and Nua-seetaga Bays. Lam Yuen (1981), U.S. Army Corps of Engineers (1980), and Sea Engineering Services Inc. (1980) provide additional information pertaining to the island's beaches.

Tactile Sensing with Whiskers of Various Shapes: Determining the Three-Dimensional Location of Object Contact Based on Mechanical Signals at the Whisker Base.

PubMed

Huet, Lucie A; Rudnicki, John W; Hartmann, Mitra J Z

2017-06-01

Almost all mammals use their mystacial vibrissae (whiskers) as important tactile sensors. There are no sensors along the length of a whisker: all sensing is performed by mechanoreceptors at the whisker base. To use artificial whiskers as a sensing tool in robotics, it is essential to be able to determine the three-dimensional (3D) location at which a whisker has made contact with an object. With the assumption of quasistatic, frictionless, single-point contact, previous work demonstrated that the 3D contact point can be uniquely determined if all six components of force and moment are measured at the whisker base, but these measurements require a six-axis load cell. Here, we perform simulations to investigate the extent to which each of the 20 possible "triplet" combinations of the six mechanical signals at the whisker base uniquely determine 3D contact point location. We perform this analysis for four different whisker profiles (shapes): tapered with and without intrinsic curvature, and cylindrical with and without intrinsic curvature. We show that whisker profile has a strong influence on the particular triplet(s) of signals that uniquely map to the 3D contact point. The triplet of bending moment, bending moment direction, and axial force produces unique mappings for tapered whiskers. Four different mappings are unique for a cylindrical whisker without intrinsic curvature, but only when large deflections are excluded. These results inform the neuroscience of vibrissotactile sensing and represent an important step toward the development of artificial whiskers for robotic applications.

Flood-inundation map and water-surface profiles for floods of selected recurrence intervals, Consumnes River and Deer Creek, Sacramento County, California

USGS Publications Warehouse

Guay, Joel R.; Harmon, Jerry G.; McPherson, Kelly R.

1998-01-01

The damage caused by the January 1997 floods along the Cosumnes River and Deer Creek generated new interest in planning and managing land use in the study area. The 1997 floodflow peak, the highest on record and considered to be a 150-year flood, caused levee failures at 24 locations. In order to provide a technical basis for floodplain management practices, the U.S. Goelogical Survey, in cooperation with the Federal Emergency Management Agency, completed a flood-inundation map of the Cosumnes River and Deer Creek drainage from Dillard Road bridge to State Highway 99. Flood frequency was estimated from streamflow records for the Cosumnes River at Michigan Bar and Deer Creek near Sloughhouse. Cross sections along a study reach, where the two rivers generally flow parallel to one another, were used with a step-backwater model (WSPRO) to estimate the water-surface profile for floods of selected recurrence intervals. A flood-inundation map was developed to show flood boundaries for the 100-year flood. Water-surface profiles were developed for the 5-, 10-, 50-, 100-, and 500-year floods.

A 3,000-loci transcription map of chromosome 3B unravels the structural and functional features of gene islands in hexaploid wheat.

PubMed

Rustenholz, Camille; Choulet, Frédéric; Laugier, Christel; Safár, Jan; Simková, Hana; Dolezel, Jaroslav; Magni, Federica; Scalabrin, Simone; Cattonaro, Federica; Vautrin, Sonia; Bellec, Arnaud; Bergès, Hélène; Feuillet, Catherine; Paux, Etienne

2011-12-01

To improve our understanding of the organization and regulation of the wheat (Triticum aestivum) gene space, we established a transcription map of a wheat chromosome (3B) by hybridizing a newly developed wheat expression microarray with bacterial artificial chromosome pools from a new version of the 3B physical map as well as with cDNA probes derived from 15 RNA samples. Mapping data for almost 3,000 genes showed that the gene space spans the whole chromosome 3B with a 2-fold increase of gene density toward the telomeres due to an increase in the number of genes in islands. Comparative analyses with rice (Oryza sativa) and Brachypodium distachyon revealed that these gene islands are composed mainly of genes likely originating from interchromosomal gene duplications. Gene Ontology and expression profile analyses for the 3,000 genes located along the chromosome revealed that the gene islands are enriched significantly in genes sharing the same function or expression profile, thereby suggesting that genes in islands acquired shared regulation during evolution. Only a small fraction of these clusters of cofunctional and coexpressed genes was conserved with rice and B. distachyon, indicating a recent origin. Finally, genes with the same expression profiles in remote islands (coregulation islands) were identified suggesting long-distance regulation of gene expression along the chromosomes in wheat.

Disaggregating and mapping crop statistics using hypertemporal remote sensing

NASA Astrophysics Data System (ADS)

Khan, M. R.; de Bie, C. A. J. M.; van Keulen, H.; Smaling, E. M. A.; Real, R.

2010-02-01

Governments compile their agricultural statistics in tabular form by administrative area, which gives no clue to the exact locations where specific crops are actually grown. Such data are poorly suited for early warning and assessment of crop production. 10-Daily satellite image time series of Andalucia, Spain, acquired since 1998 by the SPOT Vegetation Instrument in combination with reported crop area statistics were used to produce the required crop maps. Firstly, the 10-daily (1998-2006) 1-km resolution SPOT-Vegetation NDVI-images were used to stratify the study area in 45 map units through an iterative unsupervised classification process. Each unit represents an NDVI-profile showing changes in vegetation greenness over time which is assumed to relate to the types of land cover and land use present. Secondly, the areas of NDVI-units and the reported cropped areas by municipality were used to disaggregate the crop statistics. Adjusted R-squares were 98.8% for rainfed wheat, 97.5% for rainfed sunflower, and 76.5% for barley. Relating statistical data on areas cropped by municipality with the NDVI-based unit map showed that the selected crops were significantly related to specific NDVI-based map units. Other NDVI-profiles did not relate to the studied crops and represented other types of land use or land cover. The results were validated by using primary field data. These data were collected by the Spanish government from 2001 to 2005 through grid sampling within agricultural areas; each grid (block) contains three 700 m × 700 m segments. The validation showed 68%, 31% and 23% variability explained (adjusted R-squares) between the three produced maps and the thousands of segment data. Mainly variability within the delineated NDVI-units caused relatively low values; the units are internally heterogeneous. Variability between units is properly captured. The maps must accordingly be considered "small scale maps". These maps can be used to monitor crop performance of specific cropped areas because of using hypertemporal images. Early warning thus becomes more location and crop specific because of using hypertemporal remote sensing.

Surficial geologic map of the Gates of the Arctic National Park and Preserve, Alaska

USGS Publications Warehouse

Hamilton, Thomas D.; Labay, Keith A.

2011-01-01

The surfical geologic map incorporates parts of ten surficial geologic maps previously published at 1:250,000 scale. In addition, a small part of the buffer zone mapped in the southwest corner of the map area was compiled from unpublished surficial geologic mapping of the Shungnak 1:250,000-scale quadrangle. Each of those individual maps was developed from (1) aerial and surface observations of morphology and composition of unconsolidated deposits, (2) tracing the distribution and interrelation of terraces, abandoned meltwater channels, moraines, abandoned lake beds, and other landforms, (3) stratigraphic study of exposures along lake shores and river bluffs, (4) examination of sediments and soil profiles in auger borings and test pits, and exposed in roadcuts and placer workings, and (5) analysis of previously published geologic maps and reports. The map units used for those maps and employed in the present compilation are defined on the basis of their physical character, genesis, and age. Relative and absolute ages of the map units were determined from their geographic locations and from their stratigraphic positions and radiocarbon ages.

GIS-based groundwater potential mapping using boosted regression tree, classification and regression tree, and random forest machine learning models in Iran.

PubMed

Naghibi, Seyed Amir; Pourghasemi, Hamid Reza; Dixon, Barnali

2016-01-01

Groundwater is considered one of the most valuable fresh water resources. The main objective of this study was to produce groundwater spring potential maps in the Koohrang Watershed, Chaharmahal-e-Bakhtiari Province, Iran, using three machine learning models: boosted regression tree (BRT), classification and regression tree (CART), and random forest (RF). Thirteen hydrological-geological-physiographical (HGP) factors that influence locations of springs were considered in this research. These factors include slope degree, slope aspect, altitude, topographic wetness index (TWI), slope length (LS), plan curvature, profile curvature, distance to rivers, distance to faults, lithology, land use, drainage density, and fault density. Subsequently, groundwater spring potential was modeled and mapped using CART, RF, and BRT algorithms. The predicted results from the three models were validated using the receiver operating characteristics curve (ROC). From 864 springs identified, 605 (≈70 %) locations were used for the spring potential mapping, while the remaining 259 (≈30 %) springs were used for the model validation. The area under the curve (AUC) for the BRT model was calculated as 0.8103 and for CART and RF the AUC were 0.7870 and 0.7119, respectively. Therefore, it was concluded that the BRT model produced the best prediction results while predicting locations of springs followed by CART and RF models, respectively. Geospatially integrated BRT, CART, and RF methods proved to be useful in generating the spring potential map (SPM) with reasonable accuracy.

Geophysical Survey of Proposed Construction Site with Possible Faulting, East San Francisco Bay Hills, California

NASA Astrophysics Data System (ADS)

Galvin, J. L.; Deqiang, C.; Abimbola, A.; Shuler, S.; Hayashi, K.; Fox, J.; Craig, M. S.; Strayer, L. M.; Drumm, P.

2015-12-01

We conducted a geophysical study at a site proposed for a new dorm building prior to trenching planned as part of a separate fault investigation study. The study area was located on the south side of the CSU East Bay campus, roughly 100 - 300 m SSE of the current dorm complex. In addition to its proximity to the Hayward Fault, several smaller faults have been previously mapped within the proposed location, including the East and West Dibblee Faults. These faults are thought to represent contacts between the Leona Rhyolite and the Knoxville Formation. Data acquisition included seismic, resistivity, and GPS data collected in an effort to develop a better understanding of the geological and structural profile of this area, including the location of lithologic contacts, faults, and the thickness of soil and fill. Geophysical profiles were collected over the locations of future trenches. The survey included geophysical lines that were located coincident with two planned trenching sites, which were chosen to intersect mapped faults. Survey positions were recorded using differential GPS. Seismic refraction and MASW (multichannel analysis of surface waves) surveys were performed over two of the planned trench sites using a 48-channel seismographic system with 4.5 Hz geophones and a 10-lb sledgehammer. For one of the lines, geophones were spaced every 3 m with a total spread length of 141 m and a shot spacing of 9 m. For the second line, geophones were spaced every 4 m with a total spread length of 188 m. Shots were taken every 12 m. Resistivity surveys were also performed along one of the line locations using both a capacitively-coupled dipole (CCD) system and 48-electrode system. Geospatial data for the survey area were compiled, including 0.3 m color orthoimagery and vector line files for geologic unit boundaries and presumed fault locations. The products of this study will include the geophysical response of geologic formations, location of unit contacts and faults, thickness of soil and fill, shear wave velocity (VS and VS30). The results of this study will enable improved seismic hazard assessment of the site and will contribute to a better understanding of the overall geologic profile of this area.

Stream channel reference sites: An illustrated guide to field technique

Treesearch

Cheryl C Harrelson; C. L. Rawlins; John P. Potyondy

1994-01-01

This document is a guide to establishing permanent reference sites for gathering data about the physical characteristics of streams and rivers. The minimum procedure consists of the following: (1) select a site, (2) map the site and location, (3) measure the channel cross-section, (4) survey a longitudinal profile of the channel, (5) measure stream flow, (6) measure...

Application of ground-penetrating radar to investigation of near-surface fault properties in the San Francisco Bay region

USGS Publications Warehouse

Cai, J.; McMechan, G.A.; Fisher, M.A.

1996-01-01

In many geologic environments, ground-penetrating radar (GPR) provides high-resolution images of near-surface Earth structure. GPR data collection is nondestructive and very economical. The scale of features detected by GPR lies between those imaged by high-resolution seismic reflection surveys and those exposed in trenches and is therefore potentially complementary to traditional techniques for fault location and mapping. Sixty-two GPR profiles were collected at 12 sites in the San Francisco Bay region. Results show that GPR data correlate with large-scale features in existing trench observations, can be used to locate faults where they are buried or where their positions are not well known, and can identify previously unknown fault segments. The best data acquired were on a profile across the San Andreas fault, traversing Pleistocene terrace deposits south of Olema in Marin County; this profile shows a complicated multi-branched fault system from the ground surface down to about 40 m, the maximum depth for which data were recorded.

Risk mapping of bovine hypodermosis using geographical information system (GIS) in cattle of subtropical region, Pakistan.

PubMed

Khan, Mobushir Riaz; Ahmed, Haroon; Panadero-Fontan, Rosario; Lopez-Sandez, Ceferino; Khan, Muhammad Aamir; Asif, Saira; Mustafa, Irfan; Ali, Muhammad Isthiaq; Raza, Hamid; Qayyum, Mazhar

2015-08-29

Hypodermosis is an ectoparasitic disease of cattle caused by Hypoderma lineatum and Hypoderma bovis. It is an important health problem of cattle, leading to considerable economic losses. There are various factors that are involved in the spread of this disease such as herd size, location, temperature, humidity, and precipitation. Blood samples from 112 herds were collected to determine the presence of Hypoderma spp. infestation. For these herds, size and location were determined; temperature, humidity, and precipitation data were obtained from meteorological stations; and topographic features were obtained from existing maps and through field work. A regression analysis was then used to generate a risk factor analysis profile for hypodermosis and geographic information system (GIS) was used to map the risks. The GIS map developed showed the degree of infestation in different geographical locations at district and village levels. Cluster analysis demonstrated that hypodermosis prevalence varied within zones and across zones. The regression analysis showed that the temperature in the months of January, February, March, August, and November, and the precipitation in September and October had significant results (p < 0.05) when all the risks factors were analyzed. It is concluded that different ecological factors have an important impact on the intensity and infestation rate of hypodermosis across the globe. The present study might be used to control and eradicate the hypodermosis across the globe.

On mantle heterogeneity and anisotropy as mapped by inversion of global surface wave data

NASA Astrophysics Data System (ADS)

Khan, A.; Boschi, L.; Connolly, J.; Deschamps, F.

2008-12-01

We jointly invert Love and Rayleigh wave dispersion curves for the Earth's mantle composition, thermal state, P and S wave anisotropy at different locations on the Earth, based on self-consistent thermodynamic calculations. The method consists of four parts: 1. The composition of the Earth is modeled by the chemical system CaO-FeO-MgO- Al2O3-SiO2. Given these parameters and a geotherm (also an unknown), we calculate stable mineral modes, elastic properties, bulk density at the prevailing physical conditions using Gibbs free energy minimisation. Voigt-Reuss-Hill averaging is subsequently emplouyed to compute radial isotropic P and S wave velocity profiles in the elastic limit. 2. Anisotropic P and S wave velocities are determined from the isotropic ones by employing the relations ξ=(Vsh/Vsv)2, φ = (Vpv/Vph)2, η=F/(2A-L), Vs=(2Vsv2+Vsh2)/3 and Vp=(Vpv2+4Vph2)/5. The former three parameters are the standard anisotropy parameters, that we also invert for. 4. From these radial profiles, i.e. of Vsv, Vsh, Vph, Vpv and ρ, sunthetic Love and Rayleigh wave dispersion curves are calculated. The dispersion curves, which comprise fundamental and overtones up to 5th (Love) and 6th (Rayleigh) order have been extracted from global surface wave velocity maps. Given the above scheme, the data are at each location are jointly inverted using a Markov Chain Monte Carlo algorithm, from which a range of compositions, temperatures and radial profiles of anisotropy parameters, fitting data within uncertainties, are obtained. Our method has several advantages over standard approaches, in that no scaling relationships between Vs and Vp and ρ and Vs have to be introduced, implying that the full sensitivity of Rayleigh and Love waves to the parameters Vs, Vp and ρ is accounted for. In this particular study we investigate 5 locations distributed across the globe and reveal mantle chemical and thermal differences at these locations.

Bedform movement recorded by sequential single-beam surveys in tidal rivers

USGS Publications Warehouse

Dinehart, R.L.

2002-01-01

A portable system for bedform-mapping was evaluated in the delta of the lower Sacramento and San Joaquin Rivers, California, from 1998 to 2000. Bedform profiles were surveyed with a two-person crew using an array of four single-beam transducers on boats about 6 m in length. Methods for processing the bedform profiles into maps with geographic coordinates were developed for spreadsheet programs and surface-contouring software. Straight reaches were surveyed every few days or weeks to determine locations of sand deposition, net transport directions, flow thresholds for bedform regimes, and bedform-transport rates. In one channel of unidirectional flow, the portable system was used to record changes in bedform regime through minor fluctuations of low discharge, and through high discharges near channel capacity. In another channel with reversing flows from tides, the portable system recorded directions of net bedload-transport that would be undetectable by standard bedload sampling alone.

Integrating depth functions and hyper-scale terrain analysis for 3D soil organic carbon modeling in agricultural fields at regional scale

NASA Astrophysics Data System (ADS)

Ramirez-Lopez, L.; van Wesemael, B.; Stevens, A.; Doetterl, S.; Van Oost, K.; Behrens, T.; Schmidt, K.

2012-04-01

Soil Organic Carbon (SOC) represents a key component in the global C cycle and has an important influence on the global CO2 fluxes between terrestrial biosphere and atmosphere. In the context of agricultural landscapes, SOC inventories are important since soil management practices have a strong influence on CO2 fluxes and SOC stocks. However, there is lack of accurate and cost-effective methods for producing high spatial resolution of SOC information. In this respect, our work is focused on the development of a three dimensional modeling approach for SOC monitoring in agricultural fields. The study area comprises ~420 km2 and includes 4 of the 5 agro-geological regions of the Grand-Duchy of Luxembourg. The soil dataset consist of 172 profiles (1033 samples) which were not sampled specifically for this study. This dataset is a combination of profile samples collected in previous soil surveys and soil profiles sampled for other research purposes. The proposed strategy comprises two main steps. In the first step the SOC distribution within each profile (vertical distribution) is modeled. Depth functions for are fitted in order to summarize the information content in the profile. By using these functions the SOC can be interpolated at any depth within the profiles. The second step involves the use of contextual terrain (ConMap) features (Behrens et al., 2010). These features are based on the differences in elevation between a given point location in the landscape and its circular neighbourhoods at a given set of different radius. One of the main advantages of this approach is that it allows the integration of several spatial scales (eg. local and regional) for soil spatial analysis. In this work the ConMap features are derived from a digital elevation model of the area and are used as predictors for spatial modeling of the parameters of the depth functions fitted in the previous step. In this poster we present some preliminary results in which we analyze: i. The use of different depth functions, ii. The use of different machine learning approaches for modeling the parameters of the fitted depth functions using the ConMap features and iii. The influence of different spatial scales on the SOC profile distribution variability. Keywords: 3D modeling, Digital soil mapping, Depth functions, Terrain analysis. Reference Behrens, T., K. Schmidt, K., Zhu, A.X. Scholten, T. 2010. The ConMap approach for terrain-based digital soil mapping. European Journal of Soil Science, v. 61, p.133-143.

Profile 1999 : softwood sawmills in the United States and Canada

Treesearch

Henry. Spelter; Tim. McKeever

More than 1,200 sawmills produce the bulk of U.S. and Canadian softwood lumber. The maps and tables in this report show the location and size of these mills by State and Province. Analysis of timber inventories in relation to use shows a close correspondence between pricing and use intensity. In some Southern States, the intensity of use is approaching recent growth...

Subsurface mapping in the Iberian Pyrite Belt using seismic reflection profiling and potential-field data

NASA Astrophysics Data System (ADS)

Carvalho, João; Inverno, Carlos; Matos, João Xavier; Rosa, Carlos; Granado, Isabel; Branch, Tim; Represas, Patrícia; Carabaneanu, Livia; Matias, Luís; Sousa, Pedro

2017-04-01

The Iberian Pyrite Belt (IPB) hosts world-class massive sulphide deposits, such as Neves-Corvo in Portugal and Rio Tinto in Spain. In Portugal, the Palaeozoic Volcanic-Sedimentary Complex (VSC) hosts these ore deposits, extending from the Grândola-Alcácer region to the Spanish border with a NW-SE to WNW-ESE trend. In the study area, between the Neves-Corvo mine region and Alcoutim (close to the Spanish border), the VSC outcrops only in a small horst near Alcoutim. Sparse exploration drill-hole data indicate that the depth to the top of the VSC varies from several 100 m to about 1 km beneath the Mértola Formation Flysch cover. Mapping of the VSC to the SE of Neves-Corvo mine is an important exploration goal and motivated the acquisition of six 2D seismic reflection profiles with a total length of approximately 82 km in order to map the hidden extension of the VSC. The data, providing information deeper than 10 km at some locations, were integrated in a 3D software environment along with potential-field, geological and drill-hole data to form a 3D structural framework model. Seismic data show strong reflections that represent several long Variscan thrust planes that smoothly dip to the NNE. Outcropping and previously unknown Late Variscan near-vertical faults were also mapped. Our data strongly suggest that the structural framework of Neves-Corvo extends south-eastwards to Alcoutim. Furthermore, the VSC top is located at depths that show the existence within the IPB of new areas with good potential to develop exploration projects envisaging the discovery of massive sulphide deposits of the Neves-Corvo type.

Visible Wavelength Exoplanet Phase Curves from Global Albedo Maps

NASA Astrophysics Data System (ADS)

Webber, Matthew; Cahoy, Kerri Lynn

2015-01-01

To investigate the effect of three-dimensional global albedo maps we use an albedo model that: calculates albedo spectra for each points across grid in longitude and latitude on the planetary disk, uses the appropriate angles for the source-observer geometry for each location, and then weights and sums these spectra using the Tschebychev-Gauss integration method. This structure permits detailed 3D modeling of an illuminated planetary disk and computes disk-integrated phase curves. Different pressure-temperature profiles are used for each location based on geometry and dynamics. We directly couple high-density pressure maps from global dynamic radiative-transfer models to compute global cloud maps. Cloud formation is determined from the correlation of the species condensation curves with the temperature-pressure profiles. We use the detailed cloud patterns, of spatial-varying composition and temperature, to determine the observable albedo spectra and phase curves for exoplanets Kepler-7b and HD189733b. These albedo spectra are used to compute planet-star flux ratios using PHOENIX stellar models, exoplanet orbital parameters, and telescope transmission functions. Insight from the Earthshine spectrum and solid surface albedo functions (e.g. water, ice, snow, rocks) are used with our planetary grid to determine the phase curve and flux ratios of non-uniform Earth and Super Earth-like exoplanets with various rotation rates and stellar types. Predictions can be tailored to the visible and Near-InfraRed (NIR) spectral windows for the Kepler space telescope, Hubble space telescope, and future observatories (e.g. WFIRST, JWST, Exo-C, Exo-S). Additionally, we constrain the effect of exoplanet urban-light on the shape of the night-side phase curve for Earths and Super-Earths.

Stream gradient Hotspot and Cluster Analysis (SL-HCA) for improving the longitudinal profiles metrics

NASA Astrophysics Data System (ADS)

Troiani, Francesco; Piacentini, Daniela; Seta Marta, Della

2016-04-01

Many researches successfully focused on stream longitudinal profiles analysis through Stream Length-gradient (SL) index for detecting, at different spatial scales, either tectonic structures or hillslope processes. The analysis and interpretation of spatial variability of SL values, both at a regional and local scale, is often complicated due to the concomitance of different factors generating SL anomalies, including the bedrock composition. The creation of lithologically-filtered SL maps is often problematic in areas where homogeneously surveyed geological maps, with a sufficient resolution are unavailable. Moreover, both the SL map classification and the unbiased anomaly detection are rather difficult. For instance, which is the best threshold to define the anomalous SL values? Further, is there a minimum along-channel extent of anomalous SL values for objectively defining over-steeped segments on long-profiles? This research investigates the relevance and potential of a new approach based on Hotspot and Cluster Analysis of SL values (SL-HCA) for detecting knickzones on long-profiles at a regional scale and for fine-tuning the interpretation of their geological-geomorphological meaning. We developed this procedure within a 2800 km2-wide area located in the mountainous sector of the Northern Apennines of Italy. The Getis-Ord Gi∗ statistic is applied for the SL-HCA approach. The value of SL, calculated starting from a 5x5 m Digital Elevation Model, is used as weighting factor and the Gi∗ index is calculated for each 50 m-long channel segment for the whole fluvial system. The outcomes indicate that high positive Gi∗ values imply the clustering of SL anomalies, thus the occurrence of knickzones on the stream long-profiles. Results show that high and very high Gi* values (i.e. values beyond two standard deviations from the mean) correlate well with the principal knickzones detected with existent lithologically-filtered SL maps. Field checks and remote sensing analysis conducted on 52 clusters of high and very high Gi* values indicate that mass movement of slope material represents the dominant process producing over-steeped long-profiles along connected streams, whereas the litho-structure accounts for the main anomalies along disconnected steams. Tectonic structures generally provide to the largest clusters. Our results demonstrate that SL-HCA maps have the same potential of lithologically-filtered SL maps for detecting knickzones due to hillslope processes and/or tectonic structures. The reduced-complexity model derived from SL-HCA approach highly improve the readability of the morphometric outcomes, thus the interpretation at a regional scale of the geological-geomorphological meaning of over-steeped segments on long-profiles. SL-HCA maps are useful to investigate and better interpret knickzones within regions poorly covered by geological data and where field surveys are difficult to be performed.

Electromagnetic methods for mapping freshwater lenses on Micronesian atoll islands

USGS Publications Warehouse

Anthony, S.S.

1992-01-01

The overall shape of freshwater lenses can be determined by applying electromagnetic methods and inverse layered-earth modeling to the mapping of atoll island freshwater lenses. Conductivity profiles were run across the width of the inhabited islands at Mwoakilloa, Pingelap, and Sapwuahfik atolls of the Pohnpei State, Federated States of Micronesia using a dual-loop, frequency-domain, electromagnetic profiling system. Six values of apparent conductivity were recorded at each sounding station and were used to interpret layer conductivities and/or thicknesses. A three-layer model that includes the unsaturated, freshwater, and saltwater zones was used to simulate apparent-conductivity data measured in the field. Interpreted results were compared with chloride-concentration data from monitoring wells and indicate that the interface between freshwater and saltwater layers, defined from electromagnetic data, is located in the upper part of the transition zone, where the chloride-concentration profile shows a rapid increase with depth. The electromagnetic method can be used to interpret the thickness of the freshwater between monitoring wells, but can not be used to interpret the thickness of freshwater from monitoring wells to the margin of an island. ?? 1992.

Estimates of the Lightning NOx Profile in the Vicinity of the North Alabama Lightning Mapping Array

NASA Technical Reports Server (NTRS)

Koshak, William J.; Peterson, Harold

2010-01-01

The NASA Marshall Space Flight Center Lightning Nitrogen Oxides Model (LNOM) is applied to August 2006 North Alabama Lightning Mapping Array (LMA) data to estimate the raw (i.e., unmixed and otherwise environmentally unmodified) vertical profile of lightning nitrogen oxides, NOx = NO + NO 2 . This is part of a larger effort aimed at building a more realistic lightning NOx emissions inventory for use by the U.S. Environmental Protection Agency (EPA) Community Multiscale Air Quality (CMAQ) modeling system. Data from the National Lightning Detection Network TM (NLDN) is also employed. Overall, special attention is given to several important lightning variables including: the frequency and geographical distribution of lightning in the vicinity of the LMA network, lightning type (ground or cloud flash), lightning channel length, channel altitude, channel peak current, and the number of strokes per flash. Laboratory spark chamber results from the literature are used to convert 1-meter channel segments (that are located at a particular known altitude; i.e., air density) to NOx concentration. The resulting raw NOx profiles are discussed.

Estimates of the Lightning NOx Profile in the Vicinity of the North Alabama Lightning Mapping Array

NASA Technical Reports Server (NTRS)

Koshak, William J.; Peterson, Harold S.; McCaul, Eugene W.; Blazar, Arastoo

2010-01-01

The NASA Marshall Space Flight Center Lightning Nitrogen Oxides Model (LNOM) is applied to August 2006 North Alabama Lightning Mapping Array (NALMA) data to estimate the (unmixed and otherwise environmentally unmodified) vertical source profile of lightning nitrogen oxides, NOx = NO + NO2. Data from the National Lightning Detection Network (Trademark) (NLDN) is also employed. This is part of a larger effort aimed at building a more realistic lightning NOx emissions inventory for use by the U.S. Environmental Protection Agency (EPA) Community Multiscale Air Quality (CMAQ) modeling system. Overall, special attention is given to several important lightning variables including: the frequency and geographical distribution of lightning in the vicinity of the NALMA network, lightning type (ground or cloud flash), lightning channel length, channel altitude, channel peak current, and the number of strokes per flash. Laboratory spark chamber results from the literature are used to convert 1-meter channel segments (that are located at a particular known altitude; i.e., air density) to NOx concentration. The resulting lightning NOx source profiles are discussed.

Seeing the soil through the net: an eye-opener on the soil map of the Flemish region (Belgium)

NASA Astrophysics Data System (ADS)

Dondeyne, Stefaan; Vanierschot, Laura; Langohr, Roger; Van Ranst, Eric; Deckers, Jozef; Oorts, Katrien

2017-04-01

A systematic soil survey of Belgium was conducted from 1948 to 1991. Field surveys were done at the detailed scale of 1:5000 with the final maps published at a 1:20,000 scale. The legend of these detailed soil maps (scale 1:20,000) has been converted to the 3rd edition of the international soil classification system 'World Reference Base for Soil Resources' (WRB). Over the last years, the government of the Flemish region made great efforts to make these maps, along with other environmental data, available to the general audience through the internet. The soil maps are widely used and consulted by researchers, teachers, land-use planners, environmental consultancy agencies and archaeologists. The maps can be downloaded and consulted in the viewer 'Visual Soil Explorer' ('Bodemverkenner'). To increase the legibility of the maps, we assembled a collection of photographs from soil profiles representing 923 soil types and 413 photos of related landscape settings. By clicking on a specific location in the 'Visual Soil Explorer', pictures of the corresponding soil type and landscape appear in a pop-up window, with a brief explanation about the soil properties. The collection of photographs of soil profiles cover almost 80% of the total area of the Flemish region, and include the 100 most common soil types. Our own teaching experience shows that these information layers are particular valuable for teaching soil geography and earth sciences in general. Overall, such visual information layers should contribute to a better interpretation of the soil maps and legacy soil data by serving as an eye-opener on the soil map to the wider community.

Role of geospatial technology in identifying natural habitat of malarial vectors in South Andaman, India.

PubMed

Shankar, Shiva; Agrawal, Deepak Kumar

2016-03-01

Malaria is a serious disease which has repeatedly threatened Andaman, an island territory of India. Uncharted dense vegetation and inaccessibility are the salient features of the area and the major areas are covered by remotely sensed data to identify the malaria vector's natural habitat. The present investigation appraises the role of geospatial technologies in identifying the natural habitat of malarial vectors. The base map was prepared from Survey of India's toposheets, the landuse map was prepared from indices techniques like normalised difference vegetation index (NDVI), normalised difference water index (NDWI), modified normalised difference water index (MNDWI), normalised difference pond index (NDPI), and normalized difference turbidity index (NDTI) in conjugation with visual interpretation. The soil moisture content map was reproduced from the soil atlas of Andaman and Nicobar Islands followed by generation of an aspect profile from ASTER-GDEM satellite data. Both the landuse map and aspect profile were validated for accuracy in the field. A weighted overlay analysis of the classes like landuse, soil moisture and aspect profile of the study area resulted in identification of the potential natural habitat map of malaria vector surrounding the areas of Tushnabad, Garacharma, Manglutan, Chouldari, Ferrargunj and Wimberlygunj hamlets. The natural habitat of malaria vector indicated that Tushnabad, Garacharma, Manglutan, Chouldari, Ferrargunj and Wimberlygunj hamlets are within the proximity of 2.5 km from the prime habitat location with more number of malaria positive cases. Also these hamlets are surrounded by dense evergreen forest and the land surface is draped by clay loam and clay soil texture exhibiting high soil moisture content warranting high rates of survival and proliferation of the vector ensuring resurgence of malaria every year. It is thus concluded that application of geospatial technologies plays an important role in identifying the natural habitat of malaria vector.

BrainMap VBM: An environment for structural meta-analysis.

PubMed

Vanasse, Thomas J; Fox, P Mickle; Barron, Daniel S; Robertson, Michaela; Eickhoff, Simon B; Lancaster, Jack L; Fox, Peter T

2018-05-02

The BrainMap database is a community resource that curates peer-reviewed, coordinate-based human neuroimaging literature. By pairing the results of neuroimaging studies with their relevant meta-data, BrainMap facilitates coordinate-based meta-analysis (CBMA) of the neuroimaging literature en masse or at the level of experimental paradigm, clinical disease, or anatomic location. Initially dedicated to the functional, task-activation literature, BrainMap is now expanding to include voxel-based morphometry (VBM) studies in a separate sector, titled: BrainMap VBM. VBM is a whole-brain, voxel-wise method that measures significant structural differences between or within groups which are reported as standardized, peak x-y-z coordinates. Here we describe BrainMap VBM, including the meta-data structure, current data volume, and automated reverse inference functions (region-to-disease profile) of this new community resource. CBMA offers a robust methodology for retaining true-positive and excluding false-positive findings across studies in the VBM literature. As with BrainMap's functional database, BrainMap VBM may be synthesized en masse or at the level of clinical disease or anatomic location. As a use-case scenario for BrainMap VBM, we illustrate a trans-diagnostic data-mining procedure wherein we explore the underlying network structure of 2,002 experiments representing over 53,000 subjects through independent components analysis (ICA). To reduce data-redundancy effects inherent to any database, we demonstrate two data-filtering approaches that proved helpful to ICA. Finally, we apply hierarchical clustering analysis (HCA) to measure network- and disease-specificity. This procedure distinguished psychiatric from neurological diseases. We invite the neuroscientific community to further exploit BrainMap VBM with other modeling approaches. © 2018 Wiley Periodicals, Inc.

Novel analysis technique for measuring edge density fluctuation profiles with reflectometry in the Large Helical Device.

PubMed

Creely, A J; Ida, K; Yoshinuma, M; Tokuzawa, T; Tsujimura, T; Akiyama, T; Sakamoto, R; Emoto, M; Tanaka, K; Michael, C A

2017-07-01

A new method for measuring density fluctuation profiles near the edge of plasmas in the Large Helical Device (LHD) has been developed utilizing reflectometry combined with pellet-induced fast density scans. Reflectometer cutoff location was calculated by proportionally scaling the cutoff location calculated with fast far infrared laser interferometer (FIR) density profiles to match the slower time resolution results of the ray-tracing code LHD-GAUSS. Plasma velocity profile peaks generated with this reflectometer mapping were checked against velocity measurements made with charge exchange spectroscopy (CXS) and were found to agree within experimental uncertainty once diagnostic differences were accounted for. Measured density fluctuation profiles were found to peak strongly near the edge of the plasma, as is the case in most tokamaks. These measurements can be used in the future to inform inversion methods of phase contrast imaging (PCI) measurements. This result was confirmed with both a fixed frequency reflectometer and calibrated data from a multi-frequency comb reflectometer, and this method was applied successfully to a series of discharges. The full width at half maximum of the turbulence layer near the edge of the plasma was found to be only 1.5-3 cm on a series of LHD discharges, less than 5% of the normalized minor radius.

Novel analysis technique for measuring edge density fluctuation profiles with reflectometry in the Large Helical Device

NASA Astrophysics Data System (ADS)

Creely, A. J.; Ida, K.; Yoshinuma, M.; Tokuzawa, T.; Tsujimura, T.; Akiyama, T.; Sakamoto, R.; Emoto, M.; Tanaka, K.; Michael, C. A.

2017-07-01

A new method for measuring density fluctuation profiles near the edge of plasmas in the Large Helical Device (LHD) has been developed utilizing reflectometry combined with pellet-induced fast density scans. Reflectometer cutoff location was calculated by proportionally scaling the cutoff location calculated with fast far infrared laser interferometer (FIR) density profiles to match the slower time resolution results of the ray-tracing code LHD-GAUSS. Plasma velocity profile peaks generated with this reflectometer mapping were checked against velocity measurements made with charge exchange spectroscopy (CXS) and were found to agree within experimental uncertainty once diagnostic differences were accounted for. Measured density fluctuation profiles were found to peak strongly near the edge of the plasma, as is the case in most tokamaks. These measurements can be used in the future to inform inversion methods of phase contrast imaging (PCI) measurements. This result was confirmed with both a fixed frequency reflectometer and calibrated data from a multi-frequency comb reflectometer, and this method was applied successfully to a series of discharges. The full width at half maximum of the turbulence layer near the edge of the plasma was found to be only 1.5-3 cm on a series of LHD discharges, less than 5% of the normalized minor radius.

76 FR 61649 - Proposed Flood Elevation Determinations

Federal Register 2010, 2011, 2012, 2013, 2014

2011-10-05

... Insurance Rate Map located at the community map repository (see below) for exact locations of all BFEs to be... Insurance Rate Map located at the community map repository (see below) for exact locations of all BFEs to be... revised Flood Insurance Rate Map located at the community map repository (see below) for exact locations...

Risk mapping of dengue in Selangor and Kuala Lumpur, Malaysia.

PubMed

Hassan, Hafiz; Shohaimi, Shamarina; Hashim, Nor R

2012-11-01

Dengue fever is a recurring public health problem afflicting thousands of Malaysians annually. In this paper, the risk map for dengue fever in the peninsular Malaysian states of Selangor and Kuala Lumpur was modelled based on co-kriging and geographical information systems. Using population density and rainfall as the model's only input factors, the area with the highest risk for dengue infection was given as Gombak and Petaling, two districts located on opposite sides of Kuala Lumpur city that was also included in the risk assessment. Comparison of the modelled risk map with the dengue case dataset of 2010, obtained from the Ministry of Health of Malaysia, confirmed that the highest number of cases had been found in an area centred on Kuala Lumpur as predicted our risk profiling.

The dynamics of genome replication using deep sequencing

PubMed Central

Müller, Carolin A.; Hawkins, Michelle; Retkute, Renata; Malla, Sunir; Wilson, Ray; Blythe, Martin J.; Nakato, Ryuichiro; Komata, Makiko; Shirahige, Katsuhiko; de Moura, Alessandro P.S.; Nieduszynski, Conrad A.

2014-01-01

Eukaryotic genomes are replicated from multiple DNA replication origins. We present complementary deep sequencing approaches to measure origin location and activity in Saccharomyces cerevisiae. Measuring the increase in DNA copy number during a synchronous S-phase allowed the precise determination of genome replication. To map origin locations, replication forks were stalled close to their initiation sites; therefore, copy number enrichment was limited to origins. Replication timing profiles were generated from asynchronous cultures using fluorescence-activated cell sorting. Applying this technique we show that the replication profiles of haploid and diploid cells are indistinguishable, indicating that both cell types use the same cohort of origins with the same activities. Finally, increasing sequencing depth allowed the direct measure of replication dynamics from an exponentially growing culture. This is the first time this approach, called marker frequency analysis, has been successfully applied to a eukaryote. These data provide a high-resolution resource and methodological framework for studying genome biology. PMID:24089142

An objective and reproducible landform and topography description approach based on digital terrain analysis used for soil profile site characteristics

NASA Astrophysics Data System (ADS)

Gruber, Fabian E.; Baruck, Jasmin; Hastik, Richard; Geitner, Clemens

2015-04-01

All major soil description and classification systems, including the World Reference Base (WRB) and the German Soil description guidelines (KA5), require the characterization of landform and topography for soil profile sites. This is commonly done at more than one scale, for instance at macro-, meso- and micro scale. However, inherent when humans perform such a task, different surveyors will reach different conclusions due to their subjective perception of landscape structure, based on their individual mind-model of soil-landscape structure, emphasizing different aspects and scales of the landscape. In this study we apply a work-flow using the GRASS GIS extension module r.geomorphon to make use of high resolution digital elevation models (DEMs) to characterize the landform elements and topography of soil profile sites at different scales, and compare the results with a large number of soil profile site descriptions performed during the course of forestry surveys in South and North Tyrol (Italy and Austria, respectively). The r.geomorphon extension module for the open source geographic information system GRASS GIS applies a pattern recognition algorithm to delineate landform elements based on an input DEM. For each raster cell it computes and characterizes the visible neighborhood using line-of-sight calculations and then applies a lookup-table to classify the raster cell into one of ten landform elements (flat, peak, ridge, shoulder, slope, spur, hollow, footslope, valley and pit). The input parameter search radius (L) represents the maximum number of pixels for line-of-sight calculation, resulting in landforms larger than L to be split into landform components. The use of these visibility calculations makes this landform delineation approach suitable for comparison with the landform descriptions of soil surveyors, as their spatial perception of the landscape surrounding a soil profile site certainly influences their classification of the landform on which the profile is situated (aided by additional information such as topographic maps and aerial images). Variation of the L-value furthermore presents the opportunity to mimic the different scales at which surveyors describe soil profile locations. We first illustrate the use of r.geomorphon for site descriptions using exemplary artificial elevation profiles resembling typic catenas at different scales (L-values). We then compare the results of a landform element map computed with r.geomorphon to the relief descriptions in the test dataset. We link the surveyors' landform classification to the computed landform elements. Using a multi-scale approach we characterize raster cell locations in a way similar to the micro-, meso- and macroscale definitions used in soil survey, resulting in so-called geomorphon-signatures, such as "pit (meso-scale) located on a ridge (macro-scale)". We investigate which ranges of L-values best represent the different observation-scales as noted by soil surveyors and discuss the impacts of using a large dataset of profile location descriptions performed by different surveyors. Issues that arise are possible individual differences in landscape structure perception, but also questions regarding the accuracy of position and resulting topographic measurements in soil profile site description.

Planning Paths Through Singularities in the Center of Mass Space

NASA Technical Reports Server (NTRS)

Doggett, William R.; Messner, William C.; Juang, Jer-Nan

1998-01-01

The center of mass space is a convenient space for planning motions that minimize reaction forces at the robot's base or optimize the stability of a mechanism. A unique problem associated with path planning in the center of mass space is the potential existence of multiple center of mass images for a single Cartesian obstacle, since a single center of mass location can correspond to multiple robot joint configurations. The existence of multiple images results in a need to either maintain multiple center of mass obstacle maps or to update obstacle locations when the robot passes through a singularity, such as when it moves from an elbow-up to an elbow-down configuration. To illustrate the concepts presented in this paper, a path is planned for an example task requiring motion through multiple center of mass space maps. The object of the path planning algorithm is to locate the bang- bang acceleration profile that minimizes the robot's base reactions in the presence of a single Cartesian obstacle. To simplify the presentation, only non-redundant robots are considered and joint non-linearities are neglected.

Determining Titan surface topography from Cassini SAR data

USGS Publications Warehouse

Stiles, Bryan W.; Hensley, Scott; Gim, Yonggyu; Bates, David M.; Kirk, Randolph L.; Hayes, Alex; Radebaugh, Jani; Lorenz, Ralph D.; Mitchell, Karl L.; Callahan, Philip S.; Zebker, Howard; Johnson, William T.K.; Wall, Stephen D.; Lunine, Jonathan I.; Wood, Charles A.; Janssen, Michael; Pelletier, Frederic; West, Richard D.; Veeramacheneni, Chandini

2009-01-01

A technique, referred to as SARTopo, has been developed for obtaining surface height estimates with 10 km horizontal resolution and 75 m vertical resolution of the surface of Titan along each Cassini Synthetic Aperture Radar (SAR) swath. We describe the technique and present maps of the co-located data sets. A global map and regional maps of Xanadu and the northern hemisphere hydrocarbon lakes district are included in the results. A strength of the technique is that it provides topographic information co-located with SAR imagery. Having a topographic context vastly improves the interpretability of the SAR imagery and is essential for understanding Titan. SARTopo is capable of estimating surface heights for most of the SAR-imaged surface of Titan. Currently nearly 30% of the surface is within 100 km of a SARTopo height profile. Other competing techniques provide orders of magnitude less coverage. We validate the SARTopo technique through comparison with known geomorphological features such as mountain ranges and craters, and by comparison with co-located nadir altimetry, including a 3000 km strip that had been observed by SAR a month earlier. In this area, the SARTopo and nadir altimetry data sets are co-located tightly (within 5-10 km for one 500 km section), have similar resolution, and as expected agree closely in surface height. Furthermore the region contains prominent high spatial resolution topography, so it provides an excellent test of the resolution and precision of both techniques.

Flood-plain areas of the Mississippi River, mile 866.8 to mile 888.0, Minnesota

USGS Publications Warehouse

Carlson, George H.; Gue, Lowell C.

1980-01-01

Profiles of the regional flood, 500-year flood, and flood-protection elevation have been developed for a 21-mile reach of the Mississippi River. Areas flooded by the regional flood and by the 500-year flood were delineated by photogrammetric mapping techniques and are shown on seven large-scale map sheets. Over 1,300 acres of flood plain are included in the cities of Anoka, Champlin, Coon Rapids, Dayton, Ramsey and Elk River, and in unincorporated areas of Wright County. The flood-outline maps and flood profiles comprise data needed by local units of government to adopt, enforce, and administer flood-plain management regulations along the Mississippi River throughout the study reach. Streamflow data from two gaging stations provided the basis for definition of the regional and 500-year floods. Cross-section data obtained at 83 locations were used to develop a digital computer model of the river. Flood elevation and discharge data from the 1965 flood provided a basis for adjusting the computer model. Information relating the history of floods, formation of ice jams, and duration of flood elevations at Anoka and at Elk River are included.

Detection of an electron beam in a high density plasma via an electrostatic probe

NASA Astrophysics Data System (ADS)

Majeski, Stephen; Yoo, Jongsoo; Zweben, Stewart; Yamada, Masaaki; Ji, Hantao

2017-10-01

The perturbation in floating potential by an electron beam is detected by a 1D floating potential probe array to evaluate the use of an electron beam for magnetic field line mapping in the Magnetic Reconnection Experiment (MRX) plasma. The MRX plasma is relatively high density (1013 cm-3) and low temperature (5 eV). Beam electrons are emitted from a tungsten filament and are accelerated by a 200 V potential across the sheath. They stream along the magnetic field lines towards the probe array. The spatial electron beam density profile is assumed to be a Gaussian along the radial axis of MRX and the effective beam width is determined from the radial profile of the floating potential. The magnitude of the perturbation is in agreement with theoretical predictions and the location of the perturbation is also in agreement with field line mapping. In addition, no significant broadening of the electron beam is observed after propagation for tens of centimeters through the high density plasma. These results demonstrate that this method of field line mapping is, in principle, feasible in high density plasmas. This work is supported by the DOE Contract No. DE-AC0209CH11466.

Characterization of Lunar Polar Illumination from a Power System Perspective

NASA Technical Reports Server (NTRS)

Fincannon, James

2008-01-01

This paper presents the results of illumination analyses for the lunar south and north pole regions obtained using an independently developed analytical tool and two types of digital elevation models (DEM). One DEM was based on radar height data from Earth observations of the lunar surface and the other was a combination of the radar data with a separate dataset generated using Clementine spacecraft stereo imagery. The analysis tool enables the assessment of illumination at most locations in the lunar polar regions for any time and any year. Maps are presented for both lunar poles for the worst case winter period (the critical power system design and planning bottleneck) and for the more favorable best case summer period. Average illumination maps are presented to help understand general topographic trends over the regions. Energy storage duration maps are presented to assist in power system design. Average illumination fraction, energy storage duration, solar/horizon terrain elevation profiles and illumination fraction profiles are presented for favorable lunar north and south pole sites which have the potential for manned or unmanned spacecraft operations. The format of the data is oriented for use by power system designers to develop mass optimized solar and energy storage systems.

Including granulometric sediment coastal data composition into the Black Sea GIS

NASA Astrophysics Data System (ADS)

Zhuk, Elena; Khaliulin, Alexey; Krylenko, Marina; Krylenko, Viacheslav; Zodiatis, George; Nikolaidis, Marios; Nikolaidis, Andreas

2017-09-01

The module structure of the Black Sea GIS allows the increasing of its functionality, including new data types and defining new procedures accessing them, their visualization and integration with existing data by their conjoint processing and representation. The Black Sea GIS is released as free software; Mapserver is used as a mapping service; MySQL DBMS works with relational data. A new additional feature provided, is the ability of including coastal data obtained in SB SIO RAS. The data represent granulometric composition of the Anapa bay-bar sediments. The Anapa bay-bar is an accumulative sand form (about 50 km long) located on the northwest Russian Black Sea coast. The entire bay-bar and especially its southern part with sand beaches 50-200 m wide is intensively used in recreation. This work is based on the results of field studies of 2010-2014 in the southern part of the Anapa bay-bar researched by scientists of the Shirshov Institute of Oceanology RAS. Since the shore under consideration has no clearly pronounced reference points, "virtual" points located within 1 km distance from each other were selected. Transversal profiles cross these points. The granulometric composition was studied along with 45 profiles. The samples taken in every profile were from the most characteristic morphological parts of the beach. In this study we used shoreline zone samples. Twenty one granule fractions (mm) were separated in the laboratory. The module which processes coastal data allows to select coastal data based on territory/region and granulometric sediment composition. Also, it allows to visualize coastal maps with user-selected features combined with other GIS data.

Effects of RF profile on precision of quantitative T2 mapping using dual-echo steady-state acquisition.

PubMed

Wu, Pei-Hsin; Cheng, Cheng-Chieh; Wu, Ming-Long; Chao, Tzu-Cheng; Chung, Hsiao-Wen; Huang, Teng-Yi

2014-01-01

The dual echo steady-state (DESS) sequence has been shown successful in achieving fast T2 mapping with good precision. Under-estimation of T2, however, becomes increasingly prominent as the flip angle decreases. In 3D DESS imaging, therefore, the derived T2 values would become a function of the slice location in the presence of non-ideal slice profile of the excitation RF pulse. Furthermore, the pattern of slice-dependent variation in T2 estimates is dependent on the RF pulse waveform. Multi-slice 2D DESS imaging provides better inter-slice consistency, but the signal intensity is subject to integrated effects of within-slice distribution of the actual flip angle. Consequently, T2 measured using 2D DESS is prone to inaccuracy even at the designated flip angle of 90°. In this study, both phantom and human experiments demonstrate the above phenomena in good agreement with model prediction. © 2013.

Utilizing field-aligned current profiles derived from Swarm to estimate the peak emission height of 630 nm auroral arcs: a comparison of methods and discussion of associated error estimates in the ASI data.

NASA Astrophysics Data System (ADS)

Gillies, D. M.; Knudsen, D. J.; Donovan, E.; Jackel, B. J.; Gillies, R.; Spanswick, E.

2017-12-01

We compare field-aligned currents (FACs) measured by the Swarm constellation of satellites with the location of red-line (630 nm) auroral arcs observed by all-sky imagers (ASIs) to derive a characteristic emission height for the optical emissions. In our 10 events we find that an altitude of 200 km applied to the ASI maps gives optimal agreement between the two observations. We also compare the new FAC method against the traditional triangulation method using pairs of all-sky imagers (ASIs), and against electron density profiles obtained from the Resolute Bay Incoherent Scatter Radar-Canadian radar (RISR-C), both of which are consistent with a characteristic emission height of 200 km. We also present the spatial error associated with georeferencing REdline Geospace Observatory (REGO) and THEMIS all-sky imagers (ASIs) and how it applies to altitude projections of the mapped image. Utilizing this error we validate the estimated altitude of redline aurora using two methods: triangulation between ASIs and field-aligned current profiles derived from magnetometers on-board the Swarm satellites.

Characterization of a suspected terrestrial deep groundwater discharge area on the Canadian Precambrian Shield

NASA Astrophysics Data System (ADS)

Sheppard, Marsha I.; Thibault, D. H.; Milton, G. M.; Reid, J. A. K.; Smith, P. A.; Stevens, K.

1995-03-01

Underground storage and disposal of hazardous wastes require an understanding of groundwater flow and the ability to locate recharge and discharge. Usually, recharge and discharge occur at a transition zone where dispersion/advection, molecular diffusion and biogeochemical processes control the fate of a contaminants leaving an underground facility. Appropriate landscape modelling for risk assessment cannot proceed until this interface is well defined and groundwater discharge can be mapped. Although discharge locations have traditionally been thought of as aquatic, the presence of animal licks suggests the possibility of terrestrial discharge. We have characterized a suspected terrestrial discharge, a well-used deer lick, (1) physically, through surficial mapping, and vegetation and soil profile analyses; (2) geophysically, through magnetic and very low-frequency electromagnetic tilt-angle surveys; (3) hydrogeologically, through water-table elevation measurements; (4) geochemically, through overburden analyses for 238U, 226Ra, 210Pb, Na, tritium, Cl and 36{Cl}/{Cl} atom ratios, as well as pore-water and groundwater analyses for pH, electrical conductivity (EC) and major anions and cations; and (5) thermally, through overburden-rock interface temperatures. Halophytic plants and sedges contained more Na, Cl and 238U than averages reported in the literature. Lineament alignment, coincident with elevated groundwater EC, supported the presence and position of a subsurface fracture. Groundwater chemistry suggested that interfering runoff from a nearby ridge masked the chemical signatures expected of deep groundwater but attest to the weak and possibly ephemeral nature of this discharge. Interpretation of the geochemical data was supported by solute transport modelling. Good agreement between the predictions using an unsaturated soil model, a simple wetland compartment model and the observed profile implied that evapotranspiration, seasonal water-table fluctuations and flooding, and sorption of 238U due to anoxia deep in the overburden are major processes shaping the overburden solute profile. This evidence strongly supported the hypothesis that the site is a location where deep groundwater (groundwater from depths of 500-1000 m) discharges.

Effects of ICRF power on SOL density profiles and LH coupling during simultaneous LH and ICRF operation on Alcator C-Mod

NASA Astrophysics Data System (ADS)

Lau, C.; Lin, Y.; Wallace, G.; Wukitch, S. J.; Hanson, G. R.; Labombard, B.; Ochoukov, R.; Shiraiwa, S.; Terry, J.

2013-09-01

A dedicated experiment during simultaneous lower hybrid (LH) and ion cyclotron range-of-frequencies (ICRF) operations is carried out to evaluate and understand the effects of ICRF power on the scrape-off-layer (SOL) density profiles and on the resultant LH coupling for a wide range of plasma parameters on Alcator C-Mod. Operation of the LH launcher with the adjacent ICRF antenna significantly degrades LH coupling while operation with the ICRF antenna that is not magnetically connected to the LH launcher minimally affects LH coupling. An X-mode reflectometer system at three poloidal locations adjacent to the LH launcher and a visible video camera imaging the LH launcher are used to measure local SOL density profile and emissivity modifications with the application of LH and LH + ICRF power. These measurements confirm that the density in front of the LH launcher depends strongly on the magnetic field line mapping of the active ICRF antenna. Reflectometer measurements also observe both ICRF-driven and LH-driven poloidal density profile asymmetries, especially a strong density depletion at certain poloidal locations in front of the LH launcher during operation with a magnetically connected ICRF antenna. The results indicate that understanding both LH-driven flows and ICRF sheath driven flows may be necessary to understand the observed density profile modifications and LH coupling results during simultaneous LH + ICRF operation.

Preliminary Studies of the Structural Characteristics of the Lubao Fault using 2D High Resolution Shallow Seismic Reflection Profile

NASA Astrophysics Data System (ADS)

Bonus, A. A. B.; Lagmay, A. M. A.; Rodolfo, K. S.

2016-12-01

The Lubao fault, located in the province of Pampanga, Philippines, is part of the Bataan Volcanic Arc Complex (BVAC). Active faults within and around the BVAC include the East Zambales and Iba faults; according to the official active faults map of the Philippine Institute of Volcanology and Seismology (PHIVOLCS) there are no other existing active faults in the area. The Lubao Fault distinctly separates wetlands to the northeast and dry alluvial plains to the northwest of Manila Bay. Long term subsidence and high sedimentation rates were observed in the fault and over the past 1.5 thousand years, the northeastern block has dropped 3.5 meters. Along the southwest flank of Mount Natib, tectonic structures were identified using surface mapping and remote sensing. The Persistent Scattering Interferometric Synthetic Aperture Radar (PSInSAR) data results of Eco et al. in 2015 shows uplifts and subsidence in the BVAC area delineating the Lubao Fault. A 480-meter seismic reflection line was laid down perpendicular to the fault with a recording system consisting of 48 channels of Geometrics geophones spaced 10 meters apart. Acquired data were processed using the standard seismic reflection processing sequence by Yilmaz 2001. This preliminary study produced a high resolution subsurface profile of the Lubao fault in the village of San Rafael, Lubao where it is well manifested. The velocity model integrated by stratigraphic data of drilled core shows subsurface lithology. The depth converted profile reveals clear structures and dipping segments which indicates a history of movement along the Lubao fault. Discontinuity of reflectors, either offsets or breaks, are considered structures along the subsurface of the study area. Additional structural mapping and seismic lines along the projected fault are planned in the future to further detail the characteristics of the Lubao Fault. The surface observations made by other researchers coupled with the subsurface seismic profile mapping of this study hopes to clearly delineate and characterize the Lubao Fault.

Flood-inundation maps for the Tippecanoe River near Delphi, Indiana

USGS Publications Warehouse

Menke, Chad D.; Bunch, Aubrey R.; Kim, Moon H.

2013-01-01

Digital flood-inundation maps for an 11-mile reach of the Tippecanoe River that extends from County Road W725N to State Road 18 below Oakdale Dam, Indiana (Ind.), were created by the U.S. Geological Survey (USGS) in cooperation with the Indiana Department of Transportation. The inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation/, depict estimates of the areal extent of flooding corresponding to selected water levels (stages) at USGS streamgage 03333050, Tippecanoe River near Delphi, Ind. Current conditions at the USGS streamgages in Indiana may be obtained online at http://waterdata.usgs.gov/in/nwis/current/?type=flow. In addition, the information has been provided to the National Weather Service (NWS) for incorporation into their Advanced Hydrologic Prediction Service (AHPS) flood warning system (http://water.weather.gov/ahps/). The NWS forecasts flood hydrographs at many places that are often co-located at USGS streamgages. That forecasted peak-stage information, also available on the Internet, may be used in conjunction with the maps developed in this study to show predicted areas of flood inundation. In this study, water-surface profiles were simulated for the stream reach by means of a hydraulic one-dimensional step-backwater model. The model was calibrated by using the most current stage-discharge relation at USGS streamgage 03333050, Tippecanoe River near Delphi, Ind., and USGS streamgage 03332605, Tippecanoe River below Oakdale Dam, Ind. The hydraulic model was then used to simulate 13 water-surface profiles for flood stages at 1-foot intervals reference to the streamgage datum and ranging from bankfull to approximately the highest recorded water level at the streamgage. The simulated water-surface profiles were then combined with a geographic information system digital elevation model (derived from Light Detection and Ranging (LiDAR) data) in order to delineate the area flooded at each water level. A flood inundation map was generated for each water-surface profile stage (13 maps in all) so that, for any given flood stage, users will be able to view the estimated area of inundation. The availability of these maps, along with current stage from USGS streamgages and forecasted stream stages from the NWS, provides emergency management personnel and residents with information that is critical for flood response activities such as evacuations and road closures, as well as for post-flood recovery efforts.

Integrating Wind Profiling Radars and Radiosonde Observations with Model Point Data to Develop a Decision Support Tool to Assess Upper-Level Winds for Space Launch

NASA Technical Reports Server (NTRS)

Bauman, William H., III; Flinn, Clay

2013-01-01

On the day of launch, the 45th Weather Squadron (45 WS) Launch Weather Officers (LWOs) monitor the upper-level winds for their launch customers. During launch operations, the payload/launch team sometimes asks the LWOs if they expect the upper-level winds to change during the countdown. The LWOs used numerical weather prediction model point forecasts to provide the information, but did not have the capability to quickly retrieve or adequately display the upper-level observations and compare them directly in the same display to the model point forecasts to help them determine which model performed the best. The LWOs requested the Applied Meteorology Unit (AMU) develop a graphical user interface (GUI) that will plot upper-level wind speed and direction observations from the Cape Canaveral Air Force Station (CCAFS) Automated Meteorological Profiling System (AMPS) rawinsondes with point forecast wind profiles from the National Centers for Environmental Prediction (NCEP) North American Mesoscale (NAM), Rapid Refresh (RAP) and Global Forecast System (GFS) models to assess the performance of these models. The AMU suggested adding observations from the NASA 50 MHz wind profiler and one of the US Air Force 915 MHz wind profilers, both located near the Kennedy Space Center (KSC) Shuttle Landing Facility, to supplement the AMPS observations with more frequent upper-level profiles. Figure 1 shows a map of KSC/CCAFS with the locations of the observation sites and the model point forecasts.

Quantized vortices in the ideal bose gas: a physical realization of random polynomials.

PubMed

Castin, Yvan; Hadzibabic, Zoran; Stock, Sabine; Dalibard, Jean; Stringari, Sandro

2006-02-03

We propose a physical system allowing one to experimentally observe the distribution of the complex zeros of a random polynomial. We consider a degenerate, rotating, quasi-ideal atomic Bose gas prepared in the lowest Landau level. Thermal fluctuations provide the randomness of the bosonic field and of the locations of the vortex cores. These vortices can be mapped to zeros of random polynomials, and observed in the density profile of the gas.

Subsurface Fluxes Beneath Large-Scale Convective Centers in the Indian Ocean: Coupled Air-Wave-Sea Processes in the Subtropics

DTIC Science & Technology

2013-09-30

Figure 1 – Measurement systems installed on R/V Roger Revelle for DYNAMO /LASP. Inset map shows locations of land-based sounding stations...oceanographic moorings and the research vessels Mirai and Revelle during the intensive observation period of DYNAMO . The black line outlines the flight...under which each dominates. Transmission profile plus near-surface mixing measurements from LASP/ DYNAMO are being used to assess bounds on the

Characterizing the spatial distribution of multiple pollutants and populations at risk in Atlanta, Georgia.

PubMed

Pearce, John L; Waller, Lance A; Sarnat, Stefanie E; Chang, Howard H; Klein, Mitch; Mulholland, James A; Tolbert, Paige E

2016-08-01

Exposure metrics that identify spatial contrasts in multipollutant air quality are needed to better understand multipollutant geographies and health effects from air pollution. Our aim is to improve understanding of: (1) long-term spatial distributions of multiple pollutants; and (2) demographic characteristics of populations residing within areas of differing air quality. We obtained average concentrations for ten air pollutants (p=10) across a 12 km grid (n=253) covering Atlanta, Georgia for 2002-2008. We apply a self-organizing map (SOM) to our data to derive multipollutant patterns observed across our grid and classify locations under their most similar pattern (i.e, multipollutant spatial type (MST)). Finally, we geographically map classifications to delineate regions of similar multipollutant characteristics and characterize associated demographics. We found six MSTs well describe our data, with profiles highlighting a range of combinations, from locations experiencing generally clean air to locations experiencing conditions that were relatively dirty. Mapping MSTs highlighted that downtown areas were dominated by primary pollution and that suburban areas experienced relatively higher levels of secondary pollution. Demographics show the largest proportion of the overall population resided in downtown locations experiencing higher levels of primary pollution. Moreover, higher proportions of nonwhites and children in poverty reside in these areas when compared to suburban populations that resided in areas exhibiting relatively lower pollution. Our approach reveals the nature and spatial distribution of differential pollutant combinations across urban environments and provides helpful insights for identifying spatial exposure and demographic contrasts for future health studies. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

Online, automatic, ionospheric maps: IRI-PLAS-MAP

NASA Astrophysics Data System (ADS)

Arikan, F.; Sezen, U.; Gulyaeva, T. L.; Cilibas, O.

2015-04-01

Global and regional behavior of the ionosphere is an important component of space weather. The peak height and critical frequency of ionospheric layer for the maximum ionization, namely, hmF2 and foF2, and the total number of electrons on a ray path, Total Electron Content (TEC), are the most investigated and monitored values of ionosphere in capturing and observing ionospheric variability. Typically ionospheric models such as International Reference Ionosphere (IRI) can provide electron density profile, critical parameters of ionospheric layers and Ionospheric electron content for a given location, date and time. Yet, IRI model is limited by only foF2 STORM option in reflecting the dynamics of ionospheric/plasmaspheric/geomagnetic storms. Global Ionospheric Maps (GIM) are provided by IGS analysis centers for global TEC distribution estimated from ground-based GPS stations that can capture the actual dynamics of ionosphere and plasmasphere, but this service is not available for other ionospheric observables. In this study, a unique and original space weather service is introduced as IRI-PLAS-MAP from http://www.ionolab.org

Computation of wheel-rail contact force for non-mapping wheel-rail profile of Translohr tram

NASA Astrophysics Data System (ADS)

Ji, Yuanjin; Ren, Lihui; Zhou, Jinsong

2017-09-01

Translohr tram has steel wheels, in V-like arrangements, as guide wheels. These operate over the guide rails in inverted-V arrangements. However, the horizontal and vertical coordinates of the guide wheels and guide rails are not always mapped one-to-one. In this study, a simplified elastic method is proposed in order to calculate the contact points between the wheels and the rails. By transforming the coordinates, the non-mapping geometric relationship between wheel and rail is converted into a mapping relationship. Considering the Translohr tram's multi-point contact between the guide wheel and the guide rail, the elastic-contact hypothesis take into account the existence of contact patches between the bodies, and the location of the contact points is calculated using a simplified elastic method. In order to speed up the calculation, a multi-dimensional contact table is generated, enabling the use of simulation for Translohr tram running on curvatures with different radii.

Asymmetric Stokes-V Profiles at the Penumbral Boundary of a Sunspot

NASA Technical Reports Server (NTRS)

Choudhary, Debi Prasad; Balasubramanaim, K. S.; Suematsu, Yoshinori

2003-01-01

We present the spectropolarimetric measurements of a sunspot in the active region NOAA 6958 (15S03W), situated near the central meridian disk passage. The follower polarity sunspot was somewhat symmetrically round shaped with an elongated penumbra. There were several opposite polarity magnetic elements at, and beyond the penumbral boundary. The H-alpha images of the sunspot show the bright emission regions near the penumbral boundary towards the sun-center, which was of opposite polarity with respect to the main spot. The net-circular polarization (NCP) map shows that NCP is negative in the inner part of the spot and positive at the penumbral boundary and near the H-alpha plage. The Doppler velocities were determined by measuring the center-of-gravity (COG) of the Stokes-I profile and zero-crossing (ZC) wavelength of the Stokes-V profiles. The COG velocity map in general agrees with the Evershed flow. In addition, it shows the up flow in the penumbral region. The ZC velocities show the strong down flow at the penumbral boundary. Double-lobed Stokes-V profiles are observed at the locations, where the penumbral fibrils terminate coinciding the H-alpha plage. The Double lobed profiles had an unshifted component similar to the Stokes-V profiles of the sunspot penumbra and a shifted component with a velocity of about 5 km/s. The amplitude of the second component increases along the penumbral fibril as a function of the distance from the center of the sunspot. In this paper we discuss the role of emerging flux in generating the observed double lobed profiles. Based on our present observations, we propose to observe with the Solar-B Spectropolarimeter for understanding the nature of emerging flux near the sunspots.

Application of a sparseness constraint in multivariate curve resolution - Alternating least squares.

PubMed

Hugelier, Siewert; Piqueras, Sara; Bedia, Carmen; de Juan, Anna; Ruckebusch, Cyril

2018-02-13

The use of sparseness in chemometrics is a concept that has increased in popularity. The advantage is, above all, a better interpretability of the results obtained. In this work, sparseness is implemented as a constraint in multivariate curve resolution - alternating least squares (MCR-ALS), which aims at reproducing raw (mixed) data by a bilinear model of chemically meaningful profiles. In many cases, the mixed raw data analyzed are not sparse by nature, but their decomposition profiles can be, as it is the case in some instrumental responses, such as mass spectra, or in concentration profiles linked to scattered distribution maps of powdered samples in hyperspectral images. To induce sparseness in the constrained profiles, one-dimensional and/or two-dimensional numerical arrays can be fitted using a basis of Gaussian functions with a penalty on the coefficients. In this work, a least squares regression framework with L 0 -norm penalty is applied. This L 0 -norm penalty constrains the number of non-null coefficients in the fit of the array constrained without having an a priori on the number and their positions. It has been shown that the sparseness constraint induces the suppression of values linked to uninformative channels and noise in MS spectra and improves the location of scattered compounds in distribution maps, resulting in a better interpretability of the constrained profiles. An additional benefit of the sparseness constraint is a lower ambiguity in the bilinear model, since the major presence of null coefficients in the constrained profiles also helps to limit the solutions for the profiles in the counterpart matrix of the MCR bilinear model. Copyright © 2017 Elsevier B.V. All rights reserved.

Mapping beneath the seafloor: AUV sub-bottom profilers, sediment thickness and resource potential

NASA Astrophysics Data System (ADS)

Yeo, I. A.; Vardy, M. E.; Holwell, D.; North, L.; Murton, B. J.

2017-12-01

Most AUV seafloor exploration focuses primarily on collecting high-resolution bathymetric and backscatter data in order to identify and map features of interest. Sub-bottom profiler data provides an essential third dimension that can illuminate not only the thickness of overlying sediment packets, but also the scale and tectonic setting of surface features. In this study we present results of high-resolution sub-bottom profiler surveys of Tropic Seamount, a 3000m tall, 40km wide, flat-topped gyot located 400km south of the Canary Islands. We show how the application of AUV derived sub-bottom profiler data can be used to assess the thickness and extent of ferromanganese crusts covering the summit and underlying thin pelagic sediment cover. Bespoke chirp signals at two altitudes were used to increase the likelihood of resolving thin (tens of cm) layers of crust. Drill cores were obtained from an ROV and used to constrain and calibrate the profiler data. The cores show variable crustal thicknesses of zero to 14 cm of FeMn crustal cover over a partially phosphoritised, vuggy, often poorly lithified limestone basement. Initial measurements of sound velocities suggest differences between the limestone basement and the crust of only a few hundred meters per second. Sub-cores, drilled from large samples collected during the cruise were analysed in the NOC Acoustic Pulse Tube and with X-Ray Computer Tomography to better understand how variations in lithology, crustal thickness, surface texture and internal structure affect the returning geoacoustic signal. We discuss the pros and cons of different surveying patterns, altitudes and chirps, the relative usefulness of sub-bottom profiler data in different environments, and the value added by sub-bottom profiler surveying as opposed to bathymetric surveying alone.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lin, Liyong, E-mail: linl@uphs.upenn.edu; Huang, Sheng; Kang, Minglei

Purpose: The purpose of this paper is to demonstrate the utility of a comprehensive test pattern in validating calculation models that include the halo component (low-dose tails) of proton pencil beam scanning (PBS) spots. Such a pattern has been used previously for quality assurance purposes to assess spot shape, position, and dose. Methods: In this study, a scintillation detector was used to measure the test pattern in air at isocenter for two proton beam energies (115 and 225 MeV) of two IBA universal nozzles (UN #1 and UN #2). Planar measurements were compared with calculated dose distributions based on themore » weighted superposition of location-independent (UN #1) or location-dependent (UN #2) spot profiles, previously measured using a pair-magnification method and between two nozzles. Results: Including the halo component below 1% of the central dose is shown to improve the gamma-map comparison between calculation and measurement from 94.9% to 98.4% using 2 mm/2% criteria for the 115 MeV proton beam of UN #1. In contrast, including the halo component below 1% of the central dose does not improve the gamma agreement for the 115 MeV proton beam of UN #2, due to the cutoff of the halo component at off-axis locations. When location-dependent spot profiles are used for calculation instead of spot profiles at central axis, the gamma agreement is improved from 98.0% to 99.5% using 2 mm/2% criteria. The two nozzles clearly have different characteristics, as a direct comparison of measured data shows a passing rate of 89.7% for the 115 MeV proton beam. At 225 MeV, the corresponding gamma comparisons agree better between measurement and calculation, and between measurements in the two nozzles. Conclusions: In addition to confirming the primary component of individual PBS spot profiles, a comprehensive test pattern is useful for the validation of the halo component at off-axis locations, especially for low energy protons.« less

Imaging sensor constellation for tomographic chemical cloud mapping.

PubMed

Cosofret, Bogdan R; Konno, Daisei; Faghfouri, Aram; Kindle, Harry S; Gittins, Christopher M; Finson, Michael L; Janov, Tracy E; Levreault, Mark J; Miyashiro, Rex K; Marinelli, William J

2009-04-01

A sensor constellation capable of determining the location and detailed concentration distribution of chemical warfare agent simulant clouds has been developed and demonstrated on government test ranges. The constellation is based on the use of standoff passive multispectral infrared imaging sensors to make column density measurements through the chemical cloud from two or more locations around its periphery. A computed tomography inversion method is employed to produce a 3D concentration profile of the cloud from the 2D line density measurements. We discuss the theoretical basis of the approach and present results of recent field experiments where controlled releases of chemical warfare agent simulants were simultaneously viewed by three chemical imaging sensors. Systematic investigations of the algorithm using synthetic data indicate that for complex functions, 3D reconstruction errors are less than 20% even in the case of a limited three-sensor measurement network. Field data results demonstrate the capability of the constellation to determine 3D concentration profiles that account for ~?86%? of the total known mass of material released.

76 FR 70403 - Proposed Flood Elevation Determinations

Federal Register 2010, 2011, 2012, 2013, 2014

2011-11-14

... Flood Insurance Rate Map located at the community map repository (see below) for exact locations of all... Insurance Rate Map located at the community map repository (see below) for exact locations of all BFEs to be... Insurance Rate Map (FIRM) for the proposed BFEs for each community is available for inspection at the...

76 FR 26978 - Proposed Flood Elevation Determinations

Federal Register 2010, 2011, 2012, 2013, 2014

2011-05-10

... Insurance Rate Map located at the community map repository (see below) for exact locations of all BFEs to be... Insurance Rate Map located at the community map repository (see below) for exact locations of all BFEs to be... Flood Insurance Rate Map (FIRM) for the proposed BFEs for each community is available for inspection at...

Tracking the Polar Front south of New Zealand using penguin dive data

NASA Astrophysics Data System (ADS)

Sokolov, Serguei; Rintoul, Stephen R.; Wienecke, Barbara

2006-04-01

Nearly 36,000 vertical temperature profiles collected by 15 king penguins are used to map oceanographic fronts south of New Zealand. There is good correspondence between Antarctic Circumpolar Current (ACC) front locations derived from temperatures sampled in the upper 150 m along the penguin tracks and front positions inferred using maps of sea surface height (SSH). Mesoscale features detected in the SSH maps from this eddy-rich region are also reproduced in the individual temperature sections based on dive data. The foraging strategy of Macquarie Island king penguins appears to be influenced strongly by oceanographic structure: almost all the penguin dives are confined to the region close to and between the northern and southern branches of the Polar Front. Surface chlorophyll distributions also reflect the influence of the ACC fronts, with the northern branch of the Polar Front marking a boundary between low surface chlorophyll to the north and elevated values to the south.

75 FR 61373 - Proposed Flood Elevation Determinations

Federal Register 2010, 2011, 2012, 2013, 2014

2010-10-05

... located at the community map repository (see below) for exact locations of all BFEs to be changed. Send... located at the community map repository (see below) for exact locations of all BFEs to be changed. Send.... Please refer to the revised Flood Insurance Rate Map located at the community map repository (see below...

High-resolution geophysical data collected within Red Brook Harbor, Buzzards Bay, Massachusetts, in 2009

USGS Publications Warehouse

Turecek, Aaron M.; Danforth, William W.; Baldwin, Wayne E.; Barnhardt, Walter A.

2012-01-01

The U.S. Geological Survey conducted a high-resolution geophysical survey within Red Brook Harbor, Massachusetts, from September 28 through November 17, 2009. Red Brook Harbor is located on the eastern edge of Buzzards Bay, south of the Cape Cod Canal. The survey area was approximately 7 square kilometers, with depths ranging from 0 to approximately 10 meters. Data were collected aboard the U.S. Geological Survey Research Vessel Rafael. The research vessel was equipped with a 234-kilohertz interferometric sonar system to collect bathymetry and backscatter data, a dual frequency (3.5- and 200-kilohertz) compression high-intensity radar pulse seismic reflection profiler to collect subbottom data, a sound velocity profiler to acquire speed of sound within the water column, and a sea floor sampling device to collect sediment samples, video, and photographs. The survey was part of an ongoing cooperative effort between the U.S. Geological Survey and the Massachusetts Office of Coastal Zone Management to map the geology of the Massachusetts inner continental shelf. In addition to inclusion within the cooperative geologic mapping effort, these data will be used to assess the shallow-water mapping capability of the geophysical systems deployed for this project, with an emphasis on identifying resolution benchmarks for the interferometric sonar system.

Development of flood-inundation maps for the Mississippi River in Saint Paul, Minnesota

USGS Publications Warehouse

Czuba, Christiana R.; Fallon, James D.; Lewis, Corby R.; Cooper, Diane F.

2014-01-01

Digital flood-inundation maps for a 6.3-mile reach of the Mississippi River in Saint Paul, Minnesota, were developed through a multi-agency effort by the U.S. Geological Survey in cooperation with the U.S. Army Corps of Engineers and in collaboration with the National Weather Service. The inundation maps, which can be accessed through the U.S. Geological Survey Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation/ and the National Weather Service Advanced Hydrologic Prediction Service site at http://water.weather.gov/ahps/inundation.php, depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) at the U.S. Geological Survey streamgage at the Mississippi River at Saint Paul (05331000). The National Weather Service forecasted peak-stage information at the streamgage may be used in conjunction with the maps developed in this study to show predicted areas of flood inundation. In this study, flood profiles were computed for the Mississippi River by means of a one-dimensional step-backwater model. The hydraulic model was calibrated using the most recent stage-discharge relation at the Robert Street location (rating curve number 38.0) of the Mississippi River at Saint Paul (streamgage 05331000), as well as an approximate water-surface elevation-discharge relation at the Mississippi River at South Saint Paul (U.S. Army Corps of Engineers streamgage SSPM5). The model also was verified against observed high-water marks from the recent 2011 flood event and the water-surface profile from existing flood insurance studies. The hydraulic model was then used to determine 25 water-surface profiles for flood stages at 1-foot intervals ranging from approximately bankfull stage to greater than the highest recorded stage at streamgage 05331000. The simulated water-surface profiles were then combined with a geographic information system digital elevation model, derived from high-resolution topography data, to delineate potential areas flooded and to determine the water depths within the inundated areas for each stage at streamgage 05331000. The availability of these maps along with information regarding current stage at the U.S. Geological Survey streamgage and forecasted stages from the National Weather Service provides enhanced flood warning and visualization of the potential effects of a forecasted flood for the city of Saint Paul and its residents. The maps also can aid in emergency management planning and response activities, such as evacuations and road closures, as well as for post-flood recovery efforts.

Geophysical investigation at an existing landfill, Badger Army Ammunition Plant, Baraboo, Wisconsin. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Whitten, C.B.; Sjostrom, K.J.

1991-04-01

Ground-water contaminants were found in ground-water monitoring wells at the existing landfill. More wells to define the horizontal and vertical extent of the contaminant plume are to be installed. Geophysical techniques (electro-magnetic induction, vertical electrical resistivity, and horizontal resistivity profiling) were used to map the extent of the contaminant plume. Using the geophysical, ground-water elevation, and geologic data, five anomalous areas south and east of the landfill were identified as locations for additional ground-water monitoring wells.

Phase II Testing at a Prehistoric Site (32BA418) at Lake Ashtabula (Sheyenne River) Barnes County, North Dakota.

DTIC Science & Technology

1984-01-01

Subtitle) PHASE II TESTING AT 32BA3, S. TYPE OF REPORT & PERIOD COVERED BARNES COUNTY, NORTH DAKOTA. Final 6. PERFORMING ORG. REPORT NUMBER 7 . AUTHOR(a...3 4. Countour map of 32BA418 showing locations of auger test units, 1 m2 test units, cutbank profile (A - A’) and grid system ......... 7 5...Physiographic subdivisions, North Dakota ....... ............. 9 6. Vegetation zones, North Dakota ...... ................... .11 7 . Great Plains

Seismic Observations and Interpretation in NE China, Infrasound Observations and Interpretation in Utah

DTIC Science & Technology

2010-07-30

from Xu et al., 2005). (b) Map of SMU-IGPCEA Huailai Seismic Network and seismicity ( open circles) for the time period of January 01, 2002 through...the Beijing-Huailai-Fengzhen (H20) refraction/ wide angle reflection profile (Zhu et al., 1997). Open circles are locations of two historical...historycatalog_query.jsp) and the China Seismograph Network ( CSN ) Catalog (http://210.72.96.165/wdcd/csn_catalog_p001.jsp) list a total of 323 earthquakes with magnitude

A study on aircraft map display location and orientation. [effects of map display location on manual piloting performance

NASA Technical Reports Server (NTRS)

Baty, D. L.; Wempe, T. E.; Huff, E. M.

1973-01-01

Six airline pilots participated in a fixed-base simulator study to determine the effects of two Horizontal Situation Display (HSD/map) panel locations relative to the Vertical Situation Display (VSD), and of three map orientations on manual piloting performance. Pilot comments and opinions were formally obtained. Significant performance differences were found between wind conditions, and among pilots, but not between map locations and orientations. The results also illustrate the potential tracking accuracy of such a display. Recommendations concerning display location and map orientation are made.

Flood-hazard mapping in Honduras in response to Hurricane Mitch

USGS Publications Warehouse

Mastin, M.C.

2002-01-01

The devastation in Honduras due to flooding from Hurricane Mitch in 1998 prompted the U.S. Agency for International Development, through the U.S. Geological Survey, to develop a country-wide systematic approach of flood-hazard mapping and a demonstration of the method at selected sites as part of a reconstruction effort. The design discharge chosen for flood-hazard mapping was the flood with an average return interval of 50 years, and this selection was based on discussions with the U.S. Agency for International Development and the Honduran Public Works and Transportation Ministry. A regression equation for estimating the 50-year flood discharge using drainage area and annual precipitation as the explanatory variables was developed, based on data from 34 long-term gaging sites. This equation, which has a standard error of prediction of 71.3 percent, was used in a geographic information system to estimate the 50-year flood discharge at any location for any river in the country. The flood-hazard mapping method was demonstrated at 15 selected municipalities. High-resolution digital-elevation models of the floodplain were obtained using an airborne laser-terrain mapping system. Field verification of the digital elevation models showed that the digital-elevation models had mean absolute errors ranging from -0.57 to 0.14 meter in the vertical dimension. From these models, water-surface elevation cross sections were obtained and used in a numerical, one-dimensional, steady-flow stepbackwater model to estimate water-surface profiles corresponding to the 50-year flood discharge. From these water-surface profiles, maps of area and depth of inundation were created at the 13 of the 15 selected municipalities. At La Lima only, the area and depth of inundation of the channel capacity in the city was mapped. At Santa Rose de Aguan, no numerical model was created. The 50-year flood and the maps of area and depth of inundation are based on the estimated 50-year storm tide.

Seismic Tomography and the Development of a State Velocity Profile

NASA Astrophysics Data System (ADS)

Marsh, S. J.; Nakata, N.

2017-12-01

Earthquakes have been a growing concern in the State of Oklahoma in the last few years and as a result, accurate earthquake location is of utmost importance. This means using a high resolution velocity model with both lateral and vertical variations. Velocity data is determined using ambient noise seismic interferometry and tomography. Passive seismic data was acquired from multiple IRIS networks over the span of eight years (2009-2016) and filtered for earthquake removal to obtain the background ambient noise profile for the state. Seismic Interferometry is applied to simulate ray paths between stations, this is done with each possible station pair for highest resolution. Finally the method of seismic tomography is used to extract the velocity data and develop the state velocity map. The final velocity profile will be a compilation of different network analyses due to changing station availability from year to year. North-Central Oklahoma has a dense seismic network and has been operating for the past few years. The seismic stations are located here because this is the most seismically active region. Other parts of the state have not had consistent coverage from year to year, and as such a reliable and high resolution velocity profile cannot be determined from this network. However, the Transportable Array (TA) passed through Oklahoma in 2014 and provided a much wider and evenly spaced coverage. The goal of this study is to ultimately combine these two arrays over time, and provide a high quality velocity profile for the State of Oklahoma.

Flood-inundation maps for a nine-mile reach of the Des Plaines River from Riverwoods to Mettawa, Illinois

USGS Publications Warehouse

Murphy, Elizabeth A.; Soong, David T.; Sharpe, Jennifer B.

2012-01-01

Digital flood-inundation maps for a 9-mile reach of the Des Plaines River from Riverwoods to Mettawa, Illinois, were created by the U.S. Geological Survey (USGS) in cooperation with the Lake County Stormwater Management Commission and the Villages of Lincolnshire and Riverwoods. The inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation/, depict estimates of the areal extent of flooding corresponding to selected water levels (gage heights) at the USGS streamgage at Des Plaines River at Lincolnshire, Illinois (station no. 05528100). Current conditions at the USGS streamgage may be obtained on the Internet at http://waterdata.usgs.gov/usa/nwis/uv?05528100. In addition, this streamgage is incorporated into the Advanced Hydrologic Prediction Service (AHPS) flood warning system (http://water.weather.gov/ahps/) by the National Weather Service (NWS). The NWS forecasts flood hydrographs at many places that are often co-located at USGS streamgages. The NWS forecasted peak-stage information, also shown on the Des Plaines River at Lincolnshire inundation Web site, may be used in conjunction with the maps developed in this study to show predicted areas of flood inundation. In this study, flood profiles were computed for the stream reach by means of a one-dimensional step-backwater model. The hydraulic model was then used to determine seven water-surface profiles for flood stages at roughly 1-ft intervals referenced to the streamgage datum and ranging from the 50- to 0.2-percent annual exceedance probability flows. The simulated water-surface profiles were then combined with a Geographic Information System (GIS) Digital Elevation Model (DEM) (derived from Light Detection And Ranging (LiDAR) data) in order to delineate the area flooded at each water level. These maps, along with information on the Internet regarding current gage height from USGS streamgages and forecasted stream stages from the NWS, provide emergency management personnel and residents with information that is critical for flood response activities such as evacuations and road closures, as well as for post-flood recovery efforts.

SPRUCE Peat Physical and Chemical Characteristics from Experimental Plot Cores, 2012

DOE Data Explorer

Iversen, C. M. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Hanson, P. J. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Brice, D. J. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Phillips, J. R. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; McFarlane, K. J. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Hobbie, E. A. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Kolka, R. K. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.

2012-01-01

This data set reports the results of physical and chemical analyses of peat core samples from the SPRUCE experimental study plots located in the S1-Bog. On August 13-15, 2012, a team of SPRUCE investigators and collaborators collected core samples of peat in the SPRUCE experimental plots. The goal was to characterize the biological, physical, and chemical characteristics of peat, and how those characteristics changed throughout the depth profile of the bog, prior to the initialization of the SPRUCE experimental warming and CO2 treatments. Cores were collected from 16 experimental plots; samples were collected from the hummock and hollow surfaces to depths of 200-300 cm in defined increments. Three replicate cores were collected from both hummock and hollow locations in each plot. The coring locations within each plot were mapped

The Human Cell Atlas.

PubMed

Regev, Aviv; Teichmann, Sarah A; Lander, Eric S; Amit, Ido; Benoist, Christophe; Birney, Ewan; Bodenmiller, Bernd; Campbell, Peter; Carninci, Piero; Clatworthy, Menna; Clevers, Hans; Deplancke, Bart; Dunham, Ian; Eberwine, James; Eils, Roland; Enard, Wolfgang; Farmer, Andrew; Fugger, Lars; Göttgens, Berthold; Hacohen, Nir; Haniffa, Muzlifah; Hemberg, Martin; Kim, Seung; Klenerman, Paul; Kriegstein, Arnold; Lein, Ed; Linnarsson, Sten; Lundberg, Emma; Lundeberg, Joakim; Majumder, Partha; Marioni, John C; Merad, Miriam; Mhlanga, Musa; Nawijn, Martijn; Netea, Mihai; Nolan, Garry; Pe'er, Dana; Phillipakis, Anthony; Ponting, Chris P; Quake, Stephen; Reik, Wolf; Rozenblatt-Rosen, Orit; Sanes, Joshua; Satija, Rahul; Schumacher, Ton N; Shalek, Alex; Shapiro, Ehud; Sharma, Padmanee; Shin, Jay W; Stegle, Oliver; Stratton, Michael; Stubbington, Michael J T; Theis, Fabian J; Uhlen, Matthias; van Oudenaarden, Alexander; Wagner, Allon; Watt, Fiona; Weissman, Jonathan; Wold, Barbara; Xavier, Ramnik; Yosef, Nir

2017-12-05

The recent advent of methods for high-throughput single-cell molecular profiling has catalyzed a growing sense in the scientific community that the time is ripe to complete the 150-year-old effort to identify all cell types in the human body. The Human Cell Atlas Project is an international collaborative effort that aims to define all human cell types in terms of distinctive molecular profiles (such as gene expression profiles) and to connect this information with classical cellular descriptions (such as location and morphology). An open comprehensive reference map of the molecular state of cells in healthy human tissues would propel the systematic study of physiological states, developmental trajectories, regulatory circuitry and interactions of cells, and also provide a framework for understanding cellular dysregulation in human disease. Here we describe the idea, its potential utility, early proofs-of-concept, and some design considerations for the Human Cell Atlas, including a commitment to open data, code, and community.

The Human Cell Atlas

PubMed Central

Amit, Ido; Benoist, Christophe; Birney, Ewan; Bodenmiller, Bernd; Campbell, Peter; Carninci, Piero; Clatworthy, Menna; Clevers, Hans; Deplancke, Bart; Dunham, Ian; Eberwine, James; Eils, Roland; Enard, Wolfgang; Farmer, Andrew; Fugger, Lars; Göttgens, Berthold; Hacohen, Nir; Haniffa, Muzlifah; Hemberg, Martin; Kim, Seung; Klenerman, Paul; Kriegstein, Arnold; Lein, Ed; Linnarsson, Sten; Lundberg, Emma; Lundeberg, Joakim; Majumder, Partha; Marioni, John C; Merad, Miriam; Mhlanga, Musa; Nawijn, Martijn; Netea, Mihai; Nolan, Garry; Pe'er, Dana; Phillipakis, Anthony; Ponting, Chris P; Quake, Stephen; Reik, Wolf; Rozenblatt-Rosen, Orit; Sanes, Joshua; Satija, Rahul; Schumacher, Ton N; Shalek, Alex; Shapiro, Ehud; Sharma, Padmanee; Shin, Jay W; Stegle, Oliver; Stratton, Michael; Stubbington, Michael J T; Theis, Fabian J; Uhlen, Matthias; van Oudenaarden, Alexander; Wagner, Allon; Watt, Fiona; Weissman, Jonathan; Wold, Barbara; Xavier, Ramnik; Yosef, Nir

2017-01-01

The recent advent of methods for high-throughput single-cell molecular profiling has catalyzed a growing sense in the scientific community that the time is ripe to complete the 150-year-old effort to identify all cell types in the human body. The Human Cell Atlas Project is an international collaborative effort that aims to define all human cell types in terms of distinctive molecular profiles (such as gene expression profiles) and to connect this information with classical cellular descriptions (such as location and morphology). An open comprehensive reference map of the molecular state of cells in healthy human tissues would propel the systematic study of physiological states, developmental trajectories, regulatory circuitry and interactions of cells, and also provide a framework for understanding cellular dysregulation in human disease. Here we describe the idea, its potential utility, early proofs-of-concept, and some design considerations for the Human Cell Atlas, including a commitment to open data, code, and community. PMID:29206104

Profile surveys along Henrys Fork, Idaho, and Logan River and Blacksmith Fork, Utah

USGS Publications Warehouse

Herron, William Harrison

1916-01-01

In order to determine the location of undeveloped water powers the United States Geological Survey has from time to time, alone and in cooperation with State organizations, made surveys and profiles of some of the rivers of the United States that are adapted to the development of power by low or medium heads of 20 to 100 feet.The surveys are made by means of plane table and stadia. Elevations are based on heights derived from primary or precise levels of the United States Geological Survey. The maps/are made in the field, and show not only the outlines of the river banks, the islands, the positions of rapids/falls, shoals, and existing dams, and the crossings of all ferries and roads, but the contours of banks to an elevation high enough to indicate the possibility of using the stream. The elevations of the various bench marks left are noted on the field sheets in their proper positions. The figures given with the gaging stations shown on the maps indicate the elevation of the zero of the gage.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fielding, E.J.; Barazangi, M.; Isacks, B.L.

Topography and heterogeneous crustal structure have major effects on the propagation of regional seismic phases. We are collecting topographical, geological, and geophysical datasets for Eurasia into an information system that can be accessed via Internet connections. Now available are digital topography, satellite imagery, and data on sedimentary basins and crustal structure thicknesses. New datasets for Eurasia include maps of depth to Moho beneath Europe and Scandinavia. We have created regularly spaced grids of the crustal thickness values from these maps that can be used to create profiles of crustal structure. These profiles can be compared by an analyst or anmore » automatic program with the crustal seismic phases received along the propagation path to better understand and predict the path effects on phase amplitudes, a key to estimating magnitudes and yields, and for understanding variations in travel-time delays for phases such as Pn, important for improving regional event locations. The gridded data could also be used to model propagation of crustal phases in three dimensions. Digital elevation models, Satellite imagery, Geographic information systems, Lg Propagation, Moho, Geology, Crustal structure, Topographic relief.« less

Impact of spatial inhomogeneities on stratospheric species vertical profiles from remote-sensing balloon-borne instruments

NASA Astrophysics Data System (ADS)

Berthet, Gwenael; Renard, Jean-Baptiste; Catoire, Valery; Huret, Nathalie; Lefevre, Franck; Hauchecorne, Alain; Chartier, Michel; Robert, Claude

Remote-sensing balloon observations have recurrently revealed high concentrations of polar stratospheric NO2 in particular in the lower stratosphere as can be seen in various published vertical profiles. A balloon campaign dedicated to the investigation of this problem through comparisons between remote-sensing (SALOMON) and in situ (SPIRALE) measurements of NO2 inside the polar vortex was conducted in January 2006. The published results show unexpected strong enhancements in the slant column densities of NO2 with respect to the elevation angle and displacement of the balloon. These fluctuations result from NO2 spatial inhomogeneities located above the balloon float altitude resulting from mid-latitude air intrusion as revealed by Potential Vorticity (PV) maps. The retrieval of the NO2 vertical profile is subsequently biased in the form of artificial excesses of NO2 concentrations. A direct implication is that the differences previously observed between measurements of NO2 and OClO and model results are probably mostly due to the improper inversion of NO2 in presence of either perturbed dynamical conditions or when mesospheric production events occur as recently highlighted from ENVISAT data. Through the occurrence of such events, we propose to re-examine formerly published high-latitude profiles from the remote-sensing instruments AMON and SALOMON using in parallel PV maps from the MIMOSA advection contour model and the REPROBUS CTM outputs. Mid-latitude profiles of NO2 will also be investigated since they are likely to be biased if presence of air from other latitudes was present at the time of the observations.

Diagnostic evaluation of the Community Earth System Model in simulating mineral dust emission with insight into large-scale dust storm mobilization in the Middle East and North Africa (MENA)

NASA Astrophysics Data System (ADS)

Parajuli, Sagar Prasad; Yang, Zong-Liang; Lawrence, David M.

2016-06-01

Large amounts of mineral dust are injected into the atmosphere during dust storms, which are common in the Middle East and North Africa (MENA) where most of the global dust hotspots are located. In this work, we present simulations of dust emission using the Community Earth System Model Version 1.2.2 (CESM 1.2.2) and evaluate how well it captures the spatio-temporal characteristics of dust emission in the MENA region with a focus on large-scale dust storm mobilization. We explicitly focus our analysis on the model's two major input parameters that affect the vertical mass flux of dust-surface winds and the soil erodibility factor. We analyze dust emissions in simulations with both prognostic CESM winds and with CESM winds that are nudged towards ERA-Interim reanalysis values. Simulations with three existing erodibility maps and a new observation-based erodibility map are also conducted. We compare the simulated results with MODIS satellite data, MACC reanalysis data, AERONET station data, and CALIPSO 3-d aerosol profile data. The dust emission simulated by CESM, when driven by nudged reanalysis winds, compares reasonably well with observations on daily to monthly time scales despite CESM being a global General Circulation Model. However, considerable bias exists around known high dust source locations in northwest/northeast Africa and over the Arabian Peninsula where recurring large-scale dust storms are common. The new observation-based erodibility map, which can represent anthropogenic dust sources that are not directly represented by existing erodibility maps, shows improved performance in terms of the simulated dust optical depth (DOD) and aerosol optical depth (AOD) compared to existing erodibility maps although the performance of different erodibility maps varies by region.

Tropospheric Ozonesonde Profiles at Long-Term U.S. Monitoring Sites: 2. Links Between Trinidad Head, CA, Profile Clusters and Inland Surface Ozone Measurements

NASA Technical Reports Server (NTRS)

Stauffer, Ryan M.; Thompson, Anne M.; Oltmans, Samuel J.; Johnson, Bryan J.

2016-01-01

Much attention has been focused on the transport of ozone (O3) to the western U.S., particularly given the latest revision of the National Ambient Air Quality Standard to 70 parts per billion by volume (ppbv) of O3. This makes quantifying the contributions of stratosphere-to-troposphere exchange, local pollution, and pollution transport to this region essential. To evaluate free-tropospheric and surface O3 in the western U.S., we use self-organizing maps to cluster 18 years of ozonesonde profiles from Trinidad Head, CA. Three of nine O3 mixing ratio profile clusters exhibit thin laminae of high O3 above Trinidad Head. The high O3 layers are located between 1 and 6 km above mean sea level and reside above an inversion associated with a northern location of the Pacific subtropical high. Ancillary data (reanalyses, trajectories, and remotely sensed carbon monoxide) help identify the high O3 sources in one cluster, but distinguishing mixed influences on the elevated O3 in other clusters is difficult. Correlations between the elevated tropospheric O3 and surface O3 at high-altitude monitors at Lassen Volcanic and Yosemite National Parks, and Truckee, CA, are marked and long lasting. The temporal correlations likely result from a combination of transport of baseline O3 and covarying meteorological parameters. Days corresponding to the high O3 clusters exhibit hourly surface O3 anomalies of +5-10 ppbv compared to a climatology; the positive anomalies can last up to 3 days after the ozonesonde profile. The profile and surface O3 links demonstrate the importance of regular ozonesonde profiling at Trinidad Head.

Tropospheric ozonesonde profiles at long-term U.S. monitoring sites: 2. Links between Trinidad Head, CA, profile clusters and inland surface ozone measurements

PubMed Central

Stauffer, Ryan M.; Thompson, Anne M.; Oltmans, Samuel J.; Johnson, Bryan J.

2018-01-01

Much attention has been focused on the transport of ozone (O3) to the Western U.S., particularly given the latest revision of the National Ambient Air Quality Standard (NAAQS) to 70 parts per billion by volume (ppbv) of O3. This makes defining a “background” O3 amount essential so that the effects of stratosphere-to-troposphere exchange and pollution transport to this region can be quantified. To evaluate free-tropospheric and surface O3 in the Western U.S., we use self-organizing maps to cluster 18 years of ozonesonde profiles (940 samples) from Trinidad Head, CA. Two of nine O3 mixing ratio profile clusters exhibit thin laminae of high O3 above Trinidad Head. A third, consisting of background (~20 – 40 ppbv) O3, occurs in ~10% of profiles. The high O3 layers are located between 1 and 4 km amsl, and reside above a subsidence inversion associated with a northern location of the semi-permanent Pacific subtropical high. Several ancillary data sets are examined to identify the high O3 sources (reanalyses, trajectories, remotely-sensed carbon monoxide), but distinguishing chemical and stratospheric influences of the elevated O3 is difficult. There is marked and long-lasting impact of the elevated tropospheric O3 on high-altitude surface O3 monitors at Lassen Volcanic and Yosemite National Parks, and Truckee, CA. Days corresponding to the high O3 clusters exhibit hourly surface O3 anomalies of +5 – 10 ppbv compared to a climatology; the anomalies can last up to four days. The profile and surface O3 links demonstrate the importance of regular ozonesonde profiling at Trinidad Head. PMID:29619290

Tropospheric Ozonesonde Profiles at Long-Term U.S. Monitoring Sites: 2. Links Between Trinidad Head, CA, Profile Clusters and Inland Surface Ozone Measurements

NASA Technical Reports Server (NTRS)

Stauffer, Ryan M.; Thompson, Anne M.; Oltmans, Samuel J.; Johnson, Bryan J.

2017-01-01

Much attention has been focused on the transport of ozone (O3) to the Western U.S., particularly given the latest revision of the National Ambient Air Quality Standard (NAAQS) to 70 parts per billion by volume (ppbv) of O3. This makes defining a 'background' O3 amount essential so that the effects of stratosphere-to-troposphere exchange and pollution transport to this region can be quantified. To evaluate free-tropospheric and surface O3 in the Western U.S., we use self-organizing maps to cluster 18 years of ozonesonde profiles (940 samples) from Trinidad Head, CA. Two of nine O3 mixing ratio profile clusters exhibit thin laminae of high O3 above Trinidad Head. A third, consisting of background (approximately 20 - 40 ppbv) O3, occurs in approximately 10 of profiles. The high O3 layers are located between 1 and 4 km amsl, and reside above a subsidence inversion associated with a northern location of the semi-permanent Pacific subtropical high. Several ancillary data sets are examined to identify the high O3 sources (reanalyses, trajectories, remotely-sensed carbon monoxide), but distinguishing chemical and stratospheric influences of the elevated O3 is difficult. There is marked and long-lasting impact of the elevated tropospheric O3 on high-altitude surface O3 monitors at Lassen Volcanic and Yosemite National Parks, and Truckee, CA. Days corresponding to the high O3 clusters exhibit hourly surface O3 anomalies of +5 - 10 ppbv compared to a climatology; the anomalies can last up to four days. The profile and surface O3 links demonstrate the importance of regular ozonesonde profiling at Trinidad Head.

Tropospheric Ozonesonde Profiles at Long-Term U.S. Monitoring Sites: 2. Links Between Trinidad Head, CA, Profile Clusters and Inland Surface Ozone Measurements

NASA Technical Reports Server (NTRS)

Stauffer, Ryan M.; Thompson, Anne M.; Oltmans, Samual J.; Johnson, Bryan J.

2017-01-01

Much attention has been focused on the transport of ozone (O3) to the western U.S., particularly given the latest revision of the National Ambient Air Quality Standard to 70 parts per billion by volume (ppbv) of O3. This makes quantifying the contributions of stratosphere-to-troposphere exchange, local pollution, and pollution transport to this region essential. To evaluate free-tropospheric and surface O3 in the western U.S., we use self-organizing maps to cluster 18 years of ozonesonde profiles from Trinidad Head, CA. Three of nine O3 mixing ratio profile clusters exhibit thin laminae of high O3 above Trinidad Head. The high O3 layers are located between 1 and 6 km above mean sea level and reside above an inversion associated with a northern location of the Pacific subtropical high. Ancillary data (reanalyses, trajectories, and remotely sensed carbon monoxide) help identify the high O3 sources in one cluster, but distinguishing mixed influences on the elevated O3 in other clusters is difficult. Correlations between the elevated tropospheric O3 and surface O3 at high-altitude monitors at Lassen Volcanic and Yosemite National Parks, and Truckee, CA, are marked and long lasting. The temporal correlations likely result from a combination of transport of baseline O3 and covarying meteorological parameters. Days corresponding to the high O3 clusters exhibit hourly surface O3 anomalies of +5-10 ppbv compared to a climatology; the positive anomalies can last up to 3 days after the ozonesonde profile. The profile and surface O3 links demonstrate the importance of regular ozonesonde profiling at Trinidad Head.

Tropospheric ozonesonde profiles at long-term U.S. monitoring sites: 2. Links between Trinidad Head, CA, profile clusters and inland surface ozone measurements.

PubMed

Stauffer, Ryan M; Thompson, Anne M; Oltmans, Samuel J; Johnson, Bryan J

2017-01-27

Much attention has been focused on the transport of ozone (O 3 ) to the Western U.S., particularly given the latest revision of the National Ambient Air Quality Standard (NAAQS) to 70 parts per billion by volume (ppbv) of O 3 . This makes defining a "background" O 3 amount essential so that the effects of stratosphere-to-troposphere exchange and pollution transport to this region can be quantified. To evaluate free-tropospheric and surface O 3 in the Western U.S., we use self-organizing maps to cluster 18 years of ozonesonde profiles (940 samples) from Trinidad Head, CA. Two of nine O 3 mixing ratio profile clusters exhibit thin laminae of high O 3 above Trinidad Head. A third, consisting of background (~20 - 40 ppbv) O 3 , occurs in ~10% of profiles. The high O 3 layers are located between 1 and 4 km amsl, and reside above a subsidence inversion associated with a northern location of the semi-permanent Pacific subtropical high. Several ancillary data sets are examined to identify the high O 3 sources (reanalyses, trajectories, remotely-sensed carbon monoxide), but distinguishing chemical and stratospheric influences of the elevated O 3 is difficult. There is marked and long-lasting impact of the elevated tropospheric O 3 on high-altitude surface O 3 monitors at Lassen Volcanic and Yosemite National Parks, and Truckee, CA. Days corresponding to the high O 3 clusters exhibit hourly surface O 3 anomalies of +5 - 10 ppbv compared to a climatology; the anomalies can last up to four days. The profile and surface O 3 links demonstrate the importance of regular ozonesonde profiling at Trinidad Head.

Mapping nuclear craters on Enewetak Atoll, Marshall Islands

USGS Publications Warehouse

Hampson, John C., Jr.

1986-01-01

In 1984, the U.S. Geological Survey conducted a detailed geologic analysis of two nuclear test craters at Enewetak Atoll, Marshall Islands, on behalf of the Defense Nuclear Agency. A multidisciplinary task force mapped the morphology, surface character, and subsurface structure of two craters, OAK and KOA. The field mapping techniques include echo sounding, sidescan sonar imaging, single-channel and multichannel seismic reflection profiling, a seismic refraction survey, and scuba and submersible operations. All operations had to be navigated precisely and correlatable with subsequent drilling and sampling operations. Mapping with a high degree of precision at scales as large as 1:1500 required corrections that often are not considered in marine mapping. Corrections were applied to the bathymetric data for location of the echo- sounding transducer relative to the navigation transponder on the ship and for transducer depth, speed of sound, and tidal variations. Sidescan sonar, single-channel seismic reflection, and scuba and submersible data were correlated in depth and map position with the bathymetric data to provide a precise, internally consistent data set. The multichannel and refraction surveys were conducted independently but compared well with bathymetry. Examples drawn from processing the bathymetric, sidescan sonar, and single- channel reflection data help illustrate problems and procedures in precision mapping.

Mapping Informative Clusters in a Hierarchial Framework of fMRI Multivariate Analysis

PubMed Central

Xu, Rui; Zhen, Zonglei; Liu, Jia

2010-01-01

Pattern recognition methods have become increasingly popular in fMRI data analysis, which are powerful in discriminating between multi-voxel patterns of brain activities associated with different mental states. However, when they are used in functional brain mapping, the location of discriminative voxels varies significantly, raising difficulties in interpreting the locus of the effect. Here we proposed a hierarchical framework of multivariate approach that maps informative clusters rather than voxels to achieve reliable functional brain mapping without compromising the discriminative power. In particular, we first searched for local homogeneous clusters that consisted of voxels with similar response profiles. Then, a multi-voxel classifier was built for each cluster to extract discriminative information from the multi-voxel patterns. Finally, through multivariate ranking, outputs from the classifiers were served as a multi-cluster pattern to identify informative clusters by examining interactions among clusters. Results from both simulated and real fMRI data demonstrated that this hierarchical approach showed better performance in the robustness of functional brain mapping than traditional voxel-based multivariate methods. In addition, the mapped clusters were highly overlapped for two perceptually equivalent object categories, further confirming the validity of our approach. In short, the hierarchical framework of multivariate approach is suitable for both pattern classification and brain mapping in fMRI studies. PMID:21152081

Geophysical Technologies to Image Old Mine Works

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kanaan Hanna; Jim Pfeiffer

2007-01-15

ZapataEngineering, Blackhawk Division performed geophysical void detection demonstrations for the US Department of Labor Mine Safety and Health Administration (MSHA). The objective was to advance current state-of-practices of geophysical technologies for detecting underground mine voids. The presence of old mine works above, adjacent, or below an active mine presents major health and safety hazards to miners who have inadvertently cut into locations with such features. In addition, the presence of abandoned mines or voids beneath roadways and highway structures may greatly impact the performance of the transportation infrastructure in terms of cost and public safety. Roads constructed over abandoned minesmore » are subject to potential differential settlement, subsidence, sinkholes, and/or catastrophic collapse. Thus, there is a need to utilize geophysical imaging technologies to accurately locate old mine works. Several surface and borehole geophysical imaging methods and mapping techniques were employed at a known abandoned coal mine in eastern Illinois to investigate which method best map the location and extent of old works. These methods included: 1) high-resolution seismic (HRS) using compressional P-wave (HRPW) and S-wave (HRSW) reflection collected with 3-D techniques; 2) crosshole seismic tomography (XHT); 3) guided waves; 4) reverse vertical seismic profiling (RVSP); and 5) borehole sonar mapping. In addition, several exploration borings were drilled to confirm the presence of the imaged mine voids. The results indicated that the RVSP is the most viable method to accurately detect the subsurface voids with horizontal accuracy of two to five feet. This method was then applied at several other locations in Colorado with various topographic, geologic, and cultural settings for the same purpose. This paper presents the significant results obtained from the geophysical investigations in Illinois.« less

Early Opening of Seychelles and India: the Gop Basin Revisited

NASA Astrophysics Data System (ADS)

Dyment, J.; Vadakkeyakath, Y.; Bhattacharya, G.

2012-12-01

The deep offshore region located between the India-Pakistan continental margin and the Laxmi Ridge continental sliver contains valuable imprints of the early oceanic opening phase between India and the Seychelles. The acquisition of wide-angle deep seismic data by British scientists in 2003 provided new information about the deep structure and nature of the crust [1,2]. These data complement the large amount of seismic reflection profiles, altimetry-derived gravity and marine magnetic data which allow mapping the structure and determining the age of the oceanic crust [3,4,5]. Although these authors all agree on the oceanic nature of the Gop Basin, they surprisingly differ on the extent of the oceanic crust, the location of the extinct spreading center and the age of the basin. Here we re-evaluate published interpretations of the Gop Basin in light of all available data. The major discrepancy between [1,2,4] and [5] is the location of the extinct spreading center. [1,2,4] place it on an unnamed basement high located at 19°55'N, whereas [5] identify it with the Palitana Ridge at 19°25'N. Checking the location of the basement high of [1,2,4] on the basement isobath map of [3], based on many seismic reflection profiles, reveals that this basement high actually is an isolated feature of limited extent, which at best can be considered as part of a NE-SW trending basement high zone. This basement high locally coincides with a strong positive magnetic anomaly and a narrow gravity anomaly low but the trend of these anomalies is E-W, in contrast to the NE-SW trend of the basement in this area. For these reasons, this basement high probably is not the location of the Gop Basin extinct spreading center. Conversely, on the basement isobath map of [3], the Palitana Ridge appears as a prominent E-W high, located in the middle of a broad E-W graben, the Gop Basin. It extends over 200 km and is flanked on both sides by basement 2000 m deeper. On free air gravity anomaly maps, the Palitana Ridge lies in the center of the broad gravity high that delineates the Gop Basin. It corresponds, to the west, to a narrow gravity low, a typical signature of fossil spreading centers. The crustal structure determined by the wide angle seismic data of [1,2] shows that the base of the lower crust, the best seismically constrained interface (according to the ray diagram of [1]), is flat in the Arabian Basin, deeper under the Laxmi Ridge, shallower in the Gop Basin under the Palitana Ridge, and deeper again further north. For these reasons, the Palitana Ridge probably is the location of the Gop Basin extinct spreading centre. Further, the Gop Basin, being narrow, does not exhibit long sequences of magnetic anomalies, thereby making their interpretation difficult. Many models may fit the observed anomalies, so [4] and [5] each proposed different hypotheses. We note, however, that [4] consider a plausible (and preferred) model with "initial" spreading rates, i.e. just after break up, as fast as 68 mm/yr half-rate, which implies the Gop Basin to form in 1 Myr. Such a fast initial rate appears unrealistic, considering that initial spreading rates are usually much slower, about one fourth of that rate. [1] Minshull et al., Nature Geo., 2008 [2] Collier et al., JGR, 2009 [3] Malod et al., Tectonophys., 1997 [4] Collier et al., EPSL, 2008 [5] Yatheesh et al., EPSL, 2009

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lin, L; Huang, S; Kang, M

Purpose: The purpose of this manuscript is to demonstrate the utility of a comprehensive test pattern in validating calculation models of the low-dose tails of proton pencil beam scanning (PBS) spots. Such a pattern has been used previously for quality assurance purposes to assess spot shape and location, and for determining monitor units. Methods: In this study, a scintillation detector was used to measure the test pattern in air at isocenter for two proton beam energies (115 and 225 MeV) of two IBA universal nozzles (UN). Planar measurements were compared with calculated dose distribution based on the weighted superposition ofmore » spot profiles previously measured using a pair-magnification method. Results: Including the halo component below 1% of the central dose is shown to improve the gamma-map comparison between calculation and measurement from 94.9% to 98.4% using 2 mm/2% criteria for the 115 MeV proton beam of UN #1. In contrast, including the halo component below 1% of the central dose does not improve the gamma agreement for the 115 MeV proton beam of UN #2, due to the cutoff of the halo component at off-axis locations. When location-dependent spot profiles are used for calculation instead of spot profiles at central axis, the gamma agreement is improved from 98.0% to 99.5% using 2 mm/2% criteria. The cutoff of the halo component is smaller at higher energies, and is not observable for the 225 MeV proton beam for UN #2. Conclusion: In conclusion, the use of a comprehensive test pattern can facilitate the validation of the halo component of proton PBS spots at off axis locations. The cutoff of the halo component should be taken into consideration for large fields or PBS systems that intend to trim spot profiles using apertures. This work was supported by the US Army Medical Research and Materiel Command under Contract Agreement No. DAMD17-W81XWH-07-2-0121 and W81XWH-09-2-0174.« less

Estimation of alluvial-fill thickness in the Mimbres ground-water basin, New Mexico, from interpretation of isostatic residual gravity anomalies

USGS Publications Warehouse

Heywood, Charles E.

2002-01-01

The geologic structure of the Mimbres ground-water basin in southwest New Mexico is characterized by north- and northwest-trending structural subbasins. Sedimentation of Miocene and Pliocene age has filled and obscured the boundaries of these subbasins and formed poten- tially productive aquifers of varied thickness. The location and depth of the subbasins can be esti- mated from analysis of isostatic residual gravity anomalies. Density contrasts of various basement lithologies generate complex regional gravity trends, which are convolved with the gravity signal from the Miocene and Pliocene alluvial fill. An iterative scheme was used to separate these regional gravity trends from the alluvial-fill grav- ity signal, which was inverted with estimated depth-density relations to compute the thickness of the alluvial fill at 1-kilometer spacing. The thickness estimates were constrained by explor- atory drill-hole information, interpreted seismic- refraction profiles, and location of bedrock lithol- ogy from surficial geologic mapping. The result- ing map of alluvial-fill thickness suggests large areas of thin alluvium that separate deep structural subbasins.

Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling

PubMed Central

Fang, H; Tong, W; Perkins, R; Shi, L; Hong, H; Cao, X; Xie, Q; Yim, SH; Ward, JM; Pitot, HC; Dragan, YP

2005-01-01

Background The completion of the sequencing of human, mouse and rat genomes and knowledge of cross-species gene homologies enables studies of differential gene expression in animal models. These types of studies have the potential to greatly enhance our understanding of diseases such as liver cancer in humans. Genes co-expressed across multiple species are most likely to have conserved functions. We have used various bioinformatics approaches to examine microarray expression profiles from liver neoplasms that arise in albumin-SV40 transgenic rats to elucidate genes, chromosome aberrations and pathways that might be associated with human liver cancer. Results In this study, we first identified 2223 differentially expressed genes by comparing gene expression profiles for two control, two adenoma and two carcinoma samples using an F-test. These genes were subsequently mapped to the rat chromosomes using a novel visualization tool, the Chromosome Plot. Using the same plot, we further mapped the significant genes to orthologous chromosomal locations in human and mouse. Many genes expressed in rat 1q that are amplified in rat liver cancer map to the human chromosomes 10, 11 and 19 and to the mouse chromosomes 7, 17 and 19, which have been implicated in studies of human and mouse liver cancer. Using Comparative Genomics Microarray Analysis (CGMA), we identified regions of potential aberrations in human. Lastly, a pathway analysis was conducted to predict altered human pathways based on statistical analysis and extrapolation from the rat data. All of the identified pathways have been known to be important in the etiology of human liver cancer, including cell cycle control, cell growth and differentiation, apoptosis, transcriptional regulation, and protein metabolism. Conclusion The study demonstrates that the hepatic gene expression profiles from the albumin-SV40 transgenic rat model revealed genes, pathways and chromosome alterations consistent with experimental and clinical research in human liver cancer. The bioinformatics tools presented in this paper are essential for cross species extrapolation and mapping of microarray data, its analysis and interpretation. PMID:16026603

Estimated flood-inundation mapping for the Lower Blue River in Kansas City, Missouri, 2003-2005

USGS Publications Warehouse

Kelly, Brian P.; Rydlund, Jr., Paul H.

2006-01-01

The U.S. Geological Survey, in cooperation with the city of Kansas City, Missouri, began a study in 2003 of the lower Blue River in Kansas City, Missouri, from Gregory Boulevard to the mouth at the Missouri River to determine the estimated extent of flood inundation in the Blue River valley from flooding on the lower Blue River and from Missouri River backwater. Much of the lower Blue River flood plain is covered by industrial development. Rapid development in the upper end of the watershed has increased the volume of runoff, and thus the discharge of flood events for the Blue River. Modifications to the channel of the Blue River began in late 1983 in response to the need for flood control. By 2004, the channel had been widened and straightened from the mouth to immediately downstream from Blue Parkway to convey a 30-year flood. A two-dimensional depth-averaged flow model was used to simulate flooding within a 2-mile study reach of the Blue River between 63rd Street and Blue Parkway. Hydraulic simulation of the study reach provided information for the design and performance of proposed hydraulic structures and channel improvements and for the production of estimated flood-inundation maps and maps representing an areal distribution of water velocity, both magnitude and direction. Flood profiles of the Blue River were developed between Gregory Boulevard and 63rd Street from stage elevations calculated from high water marks from the flood of May 19, 2004; between 63rd Street and Blue Parkway from two-dimensional hydraulic modeling conducted for this study; and between Blue Parkway and the mouth from an existing one-dimensional hydraulic model by the U.S. Army Corps of Engineers. Twelve inundation maps were produced at 2-foot intervals for Blue Parkway stage elevations from 750 to 772 feet. Each map is associated with National Weather Service flood-peak forecast locations at 63rd Street, Blue Parkway, Stadium Drive, U.S. Highway 40, 12th Street, and the Missouri River at the Hannibal railroad bridge in Kansas City. The National Weather Service issues peak-stage forecasts for these locations during times of flooding. Missouri River backwater inundation profiles were developed using interpolated Missouri River stage elevations at the mouth of the Blue River. Twelve backwater-inundation maps were produced at 2-foot intervals for the mouth of the Blue River from 730.9 to 752.9. To provide public access to the information presented in this report, a World Wide Web site (http://mo.water.usgs.gov/indep/kelly/blueriver/index.htm) was created that displays the results of two-dimensional modeling between 63rd Street and Blue Parkway, estimated flood-inundation maps, estimated backwater-inundation maps, and the latest gage heights and National Weather Service stage forecast for each forecast location within the study area. In addition, the full text of this report, all tables, and all plates are available for download at http://pubs.water.usgs.gov/sir2006-5089.

Shear-wave velocity characterization of the USGS Hawaiian strong-motion network on the Island of Hawaii and development of an NEHRP site-class map

USGS Publications Warehouse

Wong, Ivan G.; Stokoe, Kenneth; Cox, Brady R.; Yuan, Jiabei; Knudsen, Keith L.; Terra, Fabia; Okubo, Paul G.; Lin, Yin-Cheng

2011-01-01

To assess the level and nature of ground shaking in Hawaii for the purposes of earthquake hazard mitigation and seismic design, empirical ground-motion prediction models are desired. To develop such empirical relationships, knowledge of the subsurface site conditions beneath strong-motion stations is critical. Thus, as a first step to develop ground-motion prediction models for Hawaii, spectral-analysis-of-surface-waves (SASW) profiling was performed at the 22 free-field U.S. Geological Survey (USGS) strong-motion sites on the Big Island to obtain shear-wave velocity (VS) data. Nineteen of these stations recorded the 2006 Kiholo Bay moment magnitude (M) 6.7 earthquake, and 17 stations recorded the triggered M 6.0 Mahukona earthquake. VS profiling was performed to reach depths of more than 100 ft. Most of the USGS stations are situated on sites underlain by basalt, based on surficial geologic maps. However, the sites have varying degrees of weathering and soil development. The remaining strong-motion stations are located on alluvium or volcanic ash. VS30 (average VS in the top 30 m) values for the stations on basalt ranged from 906 to 1908 ft/s [National Earthquake Hazards Reduction Program (NEHRP) site classes C and D], because most sites were covered with soil of variable thickness. Based on these data, an NEHRP site-class map was developed for the Big Island. These new VS data will be a significant input into an update of the USGS statewide hazard maps and to the operation of ShakeMap on the island of Hawaii.

Evaluation of iconic versus F-map microburst displays

NASA Technical Reports Server (NTRS)

Salzberger, Mark; Hansman, R. John; Wanke, Craig

1994-01-01

Previous studies have shown graphical presentation methods of hazardous wind shear to be superior to textual or audible warnings alone. Positional information and the strength of the hazard were observed to be and were cited by pilots as the most important factors in a display. In this experiment the use of the three different graphical presentations of hazardous wind shear are examined. Airborne predictive detectors of wind shear enable the dissemination of varying levels of information. The effectiveness of iconic and mapping display modes of different complexities are addressed through simulation and analysis. Different positional and time-varying situations are presented in a 'part-task' Boeing 767 simulator using data from actual microburst events. Experienced airline pilots fly approach profiles using both iconic and F-map wind shear alerting displays. Microburst accompanied each event is also shown to the pilot. Mapping display types are expected to be found exceptionally efficient at conveying location comparison information while iconic displays simplify the threat recognition process. Preliminary results from the simulator study are presented. Recommendations concerning the suitability of multilevel iconic and mapping displays are made. Situational problems with current display prototypes are also addressed.

Mapping dietary habits may provide clues about the factors that determine food choice.

PubMed

Hackett, A; Boddy, L; Boothby, J; Dummer, T J B; Johnson, B; Stratton, G

2008-10-01

Food deserts are thought to be a barrier to making healthier food choices. This concept has been challenged. The interaction between the physical environment and children's food choice has received little attention. The present study used food intake data to generate hypotheses concerning the role of the physical environment in food choice. A cross-sectional analysis was conducted of the dietary habits of Year 5 (9-10-year-old) children from 90 of Liverpool's 118 primary schools. Individuals with the 'best' and 'worst' food choices were mapped and two areas associated with these extreme choices located. One thousand five hundred and thirty-five children completed the dietary questionnaire and supplied a full and valid postcode. Two adjacent areas with relatively large numbers of children in the 'best' and 'worst' food choice groups were chosen. Both areas had very similar socio-economic profiles. The contrast in the physical environments was striking, even on visual inspection. Food deserts as a cause of poor food choice did not stand scrutiny; the area located by the worst food choices had a plethora of shops selling food (better termed a food prairie), whereas the area located by the best food choices had no shops in evidence but did have more 'space'.

Delineation of faulting and basin geometry along a seismic reflection transect in urbanized San Bernardino Valley, California

USGS Publications Warehouse

Stephenson, W.J.; Odum, J.K.; Williams, R.A.; Anderson, M.L.

2002-01-01

Fourteen kilometers of continuous, shallow seismic reflection data acquired through the urbanized San Bernardino Valley, California, have revealed numerous faults between the San Jacinto and San Andreas faults as well as a complex pattern of downdropped and uplifted blocks. These data also indicate that the Loma Linda fault continues northeastward at least 4.5 km beyond its last mapped location on the southern edge of the valley and to within at least 2 km of downtown San Bernardino. Previously undetected faults within the valley northeast of the San Jacinto fault are also imaged, including the inferred western extension of the Banning fault and several unnamed faults. The Rialto-Colton fault is interpreted southwest of the San Jacinto fault. The seismic data image the top of the crystalline basement complex across 70% of the profile length and show that the basement has an overall dip of roughly 10?? southwest between Perris Hill and the San Jacinto fault. Gravity and aeromagnetic data corroborate the interpreted location of the San Jacinto fault and better constrain the basin depth along the seismic profile to be as deep as 1.7 km. These data also corroborate other fault locations and the general dip of the basement surface. At least 1.2 km of apparent vertical displacement on the basement is observed across the San Jacinto fault at the profile location. The basin geometry delineated by these data was used to generate modeled ground motions that show peak horizontal amplifications of 2-3.5 above bedrock response in the 0.05- to 1.0-Hz frequency band, which is consistent with recorded earthquake data in the valley.

Subsurface imaging in a sector of Cerro Prieto transform fault near to pull-apart basin, Mexicali Valley, Baja California, Mexico, based on crooked lines 2D seismic reflection.

NASA Astrophysics Data System (ADS)

Mares-Agüero, M. A.; González-Escobar, M.; Arregui, S.

2016-12-01

In the transition zone between San Andres continental transformation system and the coupled transform faults system and rifting of Gulf of California is located the Cerro Prieto pull-apart basin delimitated by Imperial fault (northeast) and Cerro Prieto fault (CPF) (southwest), this last, is the limit west of Cerro Prieto geothermic field (CPGF). Crooked lines 2D seismic reflection, covering a portion near the intersection of CPF and CPGF are processed and interpreted. The seismic data were obtained in the early 80's by Petróleos Mexicanos (PEMEX). By decades, technical and investigation works in Cerro Prieto geothermic field and its vicinity had mapped faults at several depths but do not stablish a clear limit where this faults and CPF interact due the complex hydrothermal effects imaging the subsurface. The profiles showing the presence of a zone of uplift effect due to CPF. Considering the proximity of the profiles to CPF, it is surprising almost total absence of faults. A strong reflector around 2 km of depth, it is present in all profiles. This seismic reflector is considered a layer of shale, result of the correlation with a well located in the same region.

Social sensing of floods in the UK

PubMed Central

Williams, Hywel T. P.

2018-01-01

“Social sensing” is a form of crowd-sourcing that involves systematic analysis of digital communications to detect real-world events. Here we consider the use of social sensing for observing natural hazards. In particular, we present a case study that uses data from a popular social media platform (Twitter) to detect and locate flood events in the UK. In order to improve data quality we apply a number of filters (timezone, simple text filters and a naive Bayes ‘relevance’ filter) to the data. We then use place names in the user profile and message text to infer the location of the tweets. These two steps remove most of the irrelevant tweets and yield orders of magnitude more located tweets than we have by relying on geo-tagged data. We demonstrate that high resolution social sensing of floods is feasible and we can produce high-quality historical and real-time maps of floods using Twitter. PMID:29385132

Social sensing of floods in the UK.

PubMed

Arthur, Rudy; Boulton, Chris A; Shotton, Humphrey; Williams, Hywel T P

2018-01-01

"Social sensing" is a form of crowd-sourcing that involves systematic analysis of digital communications to detect real-world events. Here we consider the use of social sensing for observing natural hazards. In particular, we present a case study that uses data from a popular social media platform (Twitter) to detect and locate flood events in the UK. In order to improve data quality we apply a number of filters (timezone, simple text filters and a naive Bayes 'relevance' filter) to the data. We then use place names in the user profile and message text to infer the location of the tweets. These two steps remove most of the irrelevant tweets and yield orders of magnitude more located tweets than we have by relying on geo-tagged data. We demonstrate that high resolution social sensing of floods is feasible and we can produce high-quality historical and real-time maps of floods using Twitter.

Analysis of conditions favourable for small vertical axis wind turbines between building passages in urban areas of Sweden

NASA Astrophysics Data System (ADS)

Awan, Muhammad Rizwan; Riaz, Fahid; Nabi, Zahid

2017-05-01

This paper presents the analysis of installing the vertical axis wind turbines between the building passages on an island in Stockholm, Sweden. Based on the idea of wind speed amplification due to the venture effect in passages, practical measurements were carried out to study the wind profile for a range of passage widths in parallel building passages. Highest increment in wind speed was observed in building passages located on the periphery of sland as wind enters from free field. Wind mapping was performed in the island to choose the most favourable location to install the vertical axis wind turbines (VAWT). Using the annual wind speed data for location and measured amplification factor, energy potential of the street was calculated. This analysis verified that small vertical axis wind turbines can be installed in the passage centre line provided that enough space is provided for traffic and passengers.

A study on aircraft map display location and orientation

NASA Technical Reports Server (NTRS)

Baty, D. L.; Wempe, T.; Huff, E.

1973-01-01

Six airline pilots participated in a fixed-based simulator study to determine the effects of two horizontal situation display (HSD/map) panel locations relative to the vertical situation display (VSD), and of three map orientations on manual piloting performance. Pilot comments and opinions were formally obtained. Significant performance differences were found between wind conditions and among pilots but not between map locations and orientations. The results also illustrate the potential tracking accuracy of such a display. Recommendations concerning display location and map orientation are made.

A study on aircraft map display location and orientation

NASA Technical Reports Server (NTRS)

Baty, D. L.; Wempe, T. E.; Huff, E. M.

1974-01-01

Six airline pilots participated in a fixed-base simulator study to determine the effects of two horizontal situation display (HSD/map) panel locations relative to the vertical situation display (VSD), and of three map orientations on manual piloting performance. Pilot comments and opinions were formally obtained. Significant performance differences were found between wind conditions and among pilots, but not between map locations and orientations. The results also illustrate the potential tracking accuracy of such a display. Recommendations concerning display location and map orientation are made.

Seismic Line Location Map Hot Pot Project, Humboldt County, Nevada 2010

DOE Data Explorer

Lane, Michael

2010-01-01

Seismic Line Location Map Hot Pot Project, Humboldt County, Nevada 2010. ArcGIS map package containing topographic base map, Township and Range layer, Oski BLM and private leases at time of survey, and locations, with selected shot points, of the five seismic lines.

Geophysical evidence for the intersection of the St Paul, Cape Palmas and Grand Cess fracture zones with the continental margin of Liberia, West Africa

USGS Publications Warehouse

Behrendt, John C.; Schlee, J.; Robb, James M.

1974-01-01

PUBLISHED reconstructions of Gondwana continent1 (Fig. la) show a gap in fit near the junction of the Americas and Africa. To study this critical area, the Unitedgeo I made geophysical measurements and collected rock samples across the continental margin of Liberia (USGS-IDOE cruise leg 5) in November 1971. Figure Ib indicates the location of the 5,400 km of ship track on a generalised bathymetric map2. We shall discuss the data in detail elsewhere. Here we present the evidence for the existence of three fracture zones, two of which have not been reported previously, intersecting the continental margin at the north end of the South Atlantic, which remained closed probably until Cretaceous time. We suggest that Precambrian structures on the African continent controlled the location of these fracture zones. Figure Ic compares gravity and magnetic profiles and interpretations of the seismic profiles for three selected lines (27, 30 and 34) crossing the Grand Cess, Cape Palmas and St Paul fracture zones, respectively. ?? 1974 Nature Publishing Group.

In Situ Effective Diffusion Coefficient Profiles in Live Biofilms Using Pulsed-Field Gradient Nuclear Magnetic Resonance

DOE Office of Scientific and Technical Information (OSTI.GOV)

Renslow, Ryan S.; Majors, Paul D.; McLean, Jeffrey S.

2010-08-15

Diffusive mass transfer in biofilms is characterized by the effective diffusion coefficient. It is well-documented that the effective diffusion coefficient can vary by location in a biofilm. The current literature is dominated by effective diffusion coefficient measurements for distinct cell clusters and stratified biofilms showing this spatial variation. Regardless of whether distinct cell clusters or surface-averaging methods are used, position-dependent measurements of the effective diffusion coefficient are currently: 1) invasive to the biofilm, 2) performed under unnatural conditions, 3) lethal to cells, and/or 4) spatially restricted to only certain regions of the biofilm. Invasive measurements can lead to inaccurate resultsmore » and prohibit further (time dependent) measurements which are important for the mathematical modeling of biofilms. In this study our goals were to: 1) measure the effective diffusion coefficient for water in live biofilms, 2) monitor how the effective diffusion coefficient changes over time under growth conditions, and 3) correlate the effective diffusion coefficient with depth in the biofilm. We measured in situ two-dimensional effective diffusion coefficient maps within Shewanella oneidensis MR-1biofilms using pulsed-field gradient nuclear magnetic resonance methods, and used them to calculate surface-averaged relative effective diffusion coefficient (Drs) profiles. We found that 1) Drs decreased from the top of the biofilm to the bottom, 2) Drs profiles differed for biofilms of different ages, 3) Drs profiles changed over time and generally decreased with time, 4) all the biofilms showed very similar Drs profiles near the top of the biofilm, and 5) the Drs profile near the bottom of the biofilm was different for each biofilm. Practically, our results demonstrate that advanced biofilm models should use a variable effective diffusivity which changes with time and location in the biofilm.« less

Transfer of an implied incompatible spatial mapping to a Simon task.

PubMed

Luo, Chunming; Proctor, Robert W

2016-02-01

When location words left and right are presented in left and right locations and mapped to left and right keypress responses in the Hedge and Marsh (1975) task (Arend & Wandmacher, 1987), a compatible mapping of words to responses yields a benefit for stimulus-response location correspondence (sometimes called the Simon effect), whereas an incompatible mapping yields a benefit for noncorrespondence (called the Hedge and Marsh reversal). Experiment 1 replicated the correspondence benefit and its reversal by using Chinese location words [symbol: see text] (left) and [symbol: see text] (right) in the Hedge and Marsh task. Experiments 2 and 3 examined whether the tendency to respond with the noncorresponding response when the mapping is incompatible transfers to the task version in which the mapping is compatible, and Experiment 4 examined whether transfer similarly occurs from the compatible mapping to the task version with incompatible mapping. Transfer of the incompatible relation was apparent in a lack of correspondence benefit when the mapping was changed to compatible, but transfer of the compatible relation to the incompatible mapping did not occur. The results suggest that an association between noncorresponding stimulus-response locations is acquired when the word-response mapping is incompatible, even though this relation is only implicit, regardless of whether through misapplication of a logical recoding rule or spatial representations shared by the locations and words. These associations then continue to affect processing of location when the mapping is compatible. Copyright © 2015 Elsevier B.V. All rights reserved.

Facilitating in vivo tumor localization by principal component analysis based on dynamic fluorescence molecular imaging

NASA Astrophysics Data System (ADS)

Gao, Yang; Chen, Maomao; Wu, Junyu; Zhou, Yuan; Cai, Chuangjian; Wang, Daliang; Luo, Jianwen

2017-09-01

Fluorescence molecular imaging has been used to target tumors in mice with xenograft tumors. However, tumor imaging is largely distorted by the aggregation of fluorescent probes in the liver. A principal component analysis (PCA)-based strategy was applied on the in vivo dynamic fluorescence imaging results of three mice with xenograft tumors to facilitate tumor imaging, with the help of a tumor-specific fluorescent probe. Tumor-relevant features were extracted from the original images by PCA and represented by the principal component (PC) maps. The second principal component (PC2) map represented the tumor-related features, and the first principal component (PC1) map retained the original pharmacokinetic profiles, especially of the liver. The distribution patterns of the PC2 map of the tumor-bearing mice were in good agreement with the actual tumor location. The tumor-to-liver ratio and contrast-to-noise ratio were significantly higher on the PC2 map than on the original images, thus distinguishing the tumor from its nearby fluorescence noise of liver. The results suggest that the PC2 map could serve as a bioimaging marker to facilitate in vivo tumor localization, and dynamic fluorescence molecular imaging with PCA could be a valuable tool for future studies of in vivo tumor metabolism and progression.

Doping profile measurements in silicon using terahertz time domain spectroscopy (THz-TDS) via electrochemical anodic oxidation

NASA Astrophysics Data System (ADS)

Tulsyan, Gaurav

Doping profiles are engineered to manipulate device properties and to determine electrical performances of microelectronic devices frequently. To support engineering studies afterward, essential information is usually required from physically characterized doping profiles. Secondary Ion Mass Spectrometry (SIMS), Spreading Resistance Profiling (SRP) and Electrochemical Capacitance Voltage (ECV) profiling are standard techniques for now to map profile. SIMS yields a chemical doping profile via ion sputtering process and owns a better resolution, whereas ECV and SRP produce an electrical doping profile detecting free carriers in microelectronic devices. The major difference between electrical and chemical doping profiles is at heavily doped regions greater than 1020 atoms/cm3. At the profile region over the solubility limit, inactive dopants induce a flat plateau and detected by electrical measurements only. Destructive techniques are usually designed as stand-alone systems to study impurities. For an in-situ process control purpose, non-contact methods, such as ellipsometry and non-contact capacitance voltage (CV) techniques are current under development. In this theses work, terahertz time domain spectroscopy (THz-TDS) is utilized to achieve electrical doping profile in both destructive and non-contact manners. In recent years the Terahertz group at Rochester Institute Technology developed several techniques that use terahertz pulses to non-destructively map doping profiles. In this thesis, we study a destructive but potentially higher resolution version of the terahertz based approach to map the profile of activated dopants and augment the non-destructive approaches already developed. The basic idea of the profile mapping approach developed in this MS thesis is to anodize, and thus oxidize to silicon dioxide, thin layers (down to below 10 nm) of the wafer with the doping profile to be mapped. Since the dopants atoms and any free carriers in the silicon oxide thin film are invisible to the terahertz probe this anodization step very effectively removes a 'thin slice' from the doping profile to be mapped. By iterating between anodization and terahertz measurements that detect only the 'remaining' non-oxidized portion of the doping profile one can re-construct the doping profile with significantly higher precision compared to what is possible by only a single non-destructive measurement of the un-anodized profile as used in the non-destructive version of our technique. In this MS thesis we explore all aspects of this anodization based variation of doping profile mapping using free space terahertz pulses. This includes a study of silicon dioxide thin film growth using a room temperature electrochemical oxidation process. Etching procedures providing the option to remove between successive anodization and terahertz measurement steps. THz-TDS measurements of successively anodized profiles will be compared with sheet resistance and SIMS measurements to benchmark and improve the new technique.

Ion-adsorption REEs in regolith of the Liberty Hill pluton, South Carolina, USA: An effect of hydrothermal alteration

USGS Publications Warehouse

Bern, Carleton R.; Yesavage, Tiffany; Foley, Nora K.

2017-01-01

Ion-adsorbed rare earth element (REE) deposits supply the majority of world heavy REE production and substantial light REE production, but relatively little is known of their occurrence outside Southeast Asia. We examined the distribution and forms of REEs on a North American pluton located in the highly weathered and slowly eroding South Carolina Piedmont. The Hercynian Liberty Hill pluton experiences a modern climate that includes ~ 1500 mm annual rainfall and a mean annual temperature of 17 °C. The pluton is medium- to coarse-grained biotite-amphibole granite with minor biotite granite facies. REE-bearing phases are diverse and include monazite, zircon, titanite, allanite, apatite and bastnäsite. Weathered profiles were sampled up to 7 m-deep across the ~ 400 km2 pluton. In one profile, ion-adsorbed REEs plus yttrium (REE + Y) ranged up to 581 mg/kg and accounted for up to 77% of total REE + Y in saprolite. In other profiles, ion-adsorbed REE + Y ranged 12–194 mg/kg and only accounted for 3–37% of totals. The profile most enriched in ion-adsorbed REEs was located along the mapped boundary of two granite facies and contained trioctahedral smectite in the saprolite, evidence suggestive of hydrothermal alteration of biotite at that location. Post-emplacement deuteric alteration can generate easily weathered REE phases, particularly fluorocarbonates. In the case of Liberty Hill, hydrothermal alteration may have converted less soluble to more soluble REE minerals. Additionally, regolith P content was inversely correlated with the fraction ion-adsorbed REEs, and weathering related secondary REE-phosphates were found in some regolith profiles. Both patterns illustrate how low P content aids in the accumulation of ion-adsorbed REEs. The localized occurrence at Liberty Hill sheds light on conditions and processes that generate ion-adsorbed REEs.

Giovanni: The Bridge between Data and Science

NASA Technical Reports Server (NTRS)

Shen, Suhung; Lynnes, Christopher; Kempler, Steven J.

2012-01-01

NASA Giovanni (Goddard Interactive Online Visualization ANd aNalysis Infrastructure) is a web-based remote sensing and model data visualization and analysis system developed by the Goddard Earth Sciences Data and Information Services Center (GES DISC). This web-based tool facilitates data discovery, exploration and analysis of large amount of global and regional data sets, covering atmospheric dynamics, atmospheric chemistry, hydrology, oceanographic, and land surface. Data analysis functions include Lat-Lon map, time series, scatter plot, correlation map, difference, cross-section, vertical profile, and animation etc. Visualization options enable comparisons of multiple variables and easier refinement. Recently, new features have been developed, such as interactive scatter plots and maps. The performance is also being improved, in some cases by an order of magnitude for certain analysis functions with optimized software. We are working toward merging current Giovanni portals into a single omnibus portal with all variables in one (virtual) location to help users find a variable easily and enhance the intercomparison capability

Use of MAGSAT anomaly data for crustal structure and mineral resources in the US Midcontinent

NASA Technical Reports Server (NTRS)

Carmichael, R. S. (Principal Investigator)

1981-01-01

The analysis and preliminary interpretation of investigator-B MAGSAT data are addressed. The data processing included: (1) removal of spurious data points; (2) statistical smoothing along individual data tracks, to reduce the effect of geomagnetic transient disturbances; (3) comparison of data profiles spatially coincident in track location but acquired at different times; (4) reduction of data by weighted averaging to a grid with 1 deg xl deg latitude/longitude spacing, and with elevations interpolated and weighted to a common datum of 400 km; (5) wavelength filtering; and (6) reduction of the anomaly map to the magnetic pole. Agreement was found between a magnitude data anomaly map and a reduce-to-the-pole map supporting the general assumption that, on a large scale (long wavelength), it is induced crustal magnetization which is responsible for major anamalies. Anomalous features are identified and explanations are suggested with regard to crustal structure, petrologic characteristics, and Curie temperature isotherms.

Determination of Bedrock Variations and S-wave Velocity Structure in the NW part of Turkey for Earthquake Hazard Mitigation

NASA Astrophysics Data System (ADS)

Ozel, A. O.; Arslan, M. S.; Aksahin, B. B.; Genc, T.; Isseven, T.; Tuncer, M. K.

2015-12-01

Tekirdag region (NW Turkey) is quite close to the North Anatolian Fault which is capable of producing a large earthquake. Therefore, earthquake hazard mitigation studies are important for the urban areas close to the major faults. From this point of view, integration of different geophysical methods has important role for the　study of seismic hazard problems including seismotectonic zoning. On the other hand, geological mapping and determining the subsurface structure, which is a key to assist management of new developed　areas, conversion of current urban areas or assessment of urban geological hazards can be performed by integrated geophysical methods. This study has been performed in the frame of a national project, which is a complimentary project of the cooperative project between Turkey and Japan (JICA&JST), named as "Earthquake and Tsunami Disaster Mitigation in the Marmara Region and Disaster Education". With this principal aim, this study is focused on Tekirdag and its surrounding region (NW of Turkey) where some uncertainties in subsurface knowledge (maps of bedrock depth, thickness of quaternary sediments, basin geometry and seismic velocity structure,) need to be resolved. Several geophysical methods (microgravity, magnetic and single station and array microtremor measurements) are applied and the results are evaluated to characterize lithological changes in the region. Array microtremor measurements with several radiuses are taken in 30 locations and 1D-velocity structures of S-waves are determined by the inversion of phase velocities of surface waves, and the results of 1D structures are verified by theoretical Rayleigh wave modelling. Following the array measurements, single-station microtremor measurements are implemented at 75 locations to determine the predominant frequency distribution. The predominant frequencies in the region range from 0.5 Hz to 8 Hz in study area. On the other hand, microgravity and magnetic measurements are performed on the seven profiles of 45km to 60km length. We attempt to map varioations in bedrock, its geologic structure along the profiles. Final target would be 3-dimensional mapping of bedrock in the area.

Sub-glacier ocean properties and mass balance estimates of Petermann Gletscher's floating tongue in Northwestern Greenland

NASA Astrophysics Data System (ADS)

Steffen, K.; Huff, R. D.; Cullen, N.; Rignot, E.; Bauder, A.

2004-12-01

Petermann Gletscher is the largest and most influential outlet glacier in central northern Greenland. Located at 81 N, 60 W, it drains an area of 71,580 km2, with a discharge of 12 cubic km of ice per year into the Arctic Ocean. We finished a third field season in spring 2004 collecting in situ data on local climate, ice velocity, ice thickness profiles and bottom melt rates of the floating ice tongue. In addition, water properties (salinity and temperature profiles) in large, channel-like bottom cavities beneath the floating ice tongue were measured. The melt rates in these "channels" are in excess of 10 m/y and probably responsible for most of the mass loss of the Petermann Gletscher. The ocean measurements will be discussed in comparison with other ocean-profile soundings in the region. The bottom topography of the floating ice tongue has been mapped for some regions using surface-based ground penetrating radar at 25 MHz frequency and NASA aircraft radar profiles. A new map showing these under-ice features will be presented. GPS tidal motion has been measured over one lunar cycle at the flex zone and on the free floating ice tongue. These results will be compared to historic measurements made at the beginning of last century. A "worm-like" sheer feature of 80 m in height and several km in length has been studied using differential GPS readings. The mean velocity of the floating tongue ice is 1.08 km/y in that region, whereas the ice along the margin has a 30%-reduced flow speed, resulting in this strange looking sheer feature. Finally, the mass balance of the floating ice tongue will be discussed based on in situ measurements, aircraft profiles, satellite data, and model approximations.

Flood-inundation maps for the Tippecanoe River at Winamac, Indiana

USGS Publications Warehouse

Menke, Chad D.; Bunch, Aubrey R.

2015-09-25

For this study, flood profiles were computed for the Tippecanoe River reach by means of a one-dimensional step-backwater model. The hydraulic model was calibrated by using the most current stage-discharge relations at the Tippecanoe River streamgage, in combination with the current (2014) Federal Emergency Management Agency flood-insurance study for Pulaski County. The calibrated hydraulic model was then used to determine nine water-surface profiles for flood stages at 1-foot intervals referenced to the streamgage datum and ranging from bankfull to the highest stage of the current stage-discharge rating curve. The 1-percent annual exceedance probability (AEP) flood stage (flood with recurrence intervals within 100 years) has not been determined yet for this streamgage location. The rating has not been developed for the 1-percent AEP because the streamgage dates to only 2001. The simulated water-surface profiles were then used with a geographic information system (GIS) digital elevation model (DEM, derived from Light Detection and Ranging [lidar]) in order to delineate the area flooded at each water level. The availability of these maps, along with Internet information regarding current stage from the USGS streamgage 03331753, Tippecanoe River at Winamac, Ind., and forecast stream stages from the NWS AHPS, provides emergency management personnel and residents with information that is critical for flood response activities such as evacuations and road closures, as well as for post-flood recovery efforts.

Flood-inundation maps for the West Branch Delaware River, Delhi, New York, 2012

USGS Publications Warehouse

Coon, William F.; Breaker, Brian K.

2012-01-01

Digital flood-inundation maps for a 5-mile reach of the West Branch Delaware River through the Village and part of the Town of Delhi, New York, were created by the U.S. Geological Survey (USGS) in cooperation with the Village of Delhi, the Delaware County Soil and Water Conservation District, and the Delaware County Planning Department. The inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation/ and the Federal Flood Inundation Mapper Web site at http://wim.usgs.gov/FIMI/FloodInundationMapper.html, depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) referenced to the USGS streamgage at West Branch Delaware River upstream from Delhi, N.Y. (station number 01421900). In this study, flood profiles were computed for the stream reach by means of a one-dimensional step-backwater model that had been used to produce the flood insurance rate maps for the most recent flood insurance study for the Town and Village of Delhi. This hydraulic model was used to compute 10 water-surface profiles for flood stages at 1-foot (ft) intervals referenced to the streamgage datum and ranging from 7 ft or near bankfull to 16 ft, which exceeds the stages that correspond to both the estimated 0.2-percent annual-exceedance-probability flood (500-year recurrence interval flood) and the maximum recorded peak flow. The simulated water-surface profiles were then combined with a geographic information system (GIS) digital elevation model, which was derived from Light Detection and Ranging (LiDAR) data with a 1.2-ft (0.61-ft root mean squared error) vertical accuracy and 3.3-ft (1-meter) horizontal resolution, to delineate the area flooded at each water level. A map that was produced using this method to delineate the inundated area for the flood that occurred on August 28, 2011, agreed well with highwater marks that had been located in the field using a global positioning system. The availability of the 10 flood-inundation maps on the USGS Flood Inundation Mapping Science Web site, along with Internet information regarding current stage from the USGS streamgage, will provide emergency management personnel and residents with information that is critical for flood-response activities, such as evacuations and road closures, as well as for post-flood recovery efforts.

Data for giant constrictors - Biological management profiles and an establishment risk assessment for nine large species of pythons, anacondas, and the boa constrictor

USGS Publications Warehouse

Jarnevich, C.S.; Rodda, G.H.; Reed, R.N.

2011-01-01

Giant Constrictors' Climate Space The giant constrictors' climate space data set represents the information needed to recreate the climate space and climate matching analyses in Reed and Rodda (2009). A detailed methodology and results are included in that report. The data include locations for nine species of large constrictors including Python molurus, Broghammerus reticulatus, P. sebae, P. natalensis, Boa constrictor, Eunectes notaeus, E. deschauenseei, E. beniensis, and E. murinus. The locations are from published sources. Climate data are included for monthly precipitation and average monthly temperature along with the species locations. The individual spreadsheets of location data match the figures in the Reed and Rodda (2009) report, illustrating areas of the mainland United States that match the climate envelope of the native range. The precipitation and temperature data at each location were used to determine the climate space for each species. Graphs of climate space formed the basis for the algorithms in the data set, and more details can be found in Reed and Rodda (2009). These algorithms were used in ArcGIS to generate maps of areas in the United States that matched the climate space of locations of the snakes in their native range. We discovered a rounding error in ArcGIS in the implementation of the algorithms, which has been corrected here. Therefore the shapefiles are slightly different than those appearing in the risk assessment figures illustrating areas of the United States that match the climate envelope of the species in their native ranges. However, the suitable localities are not different at the scale of intended use for these maps, although there are more noticeable differences between areas classified as 'too cold' and 'too hot'.

Mapping and Monitoring Delmarva Fox Squirrel Habitat Using an Airborne LiDAR Profiler

NASA Technical Reports Server (NTRS)

Nelson, Ross; Ratnaswamy, Mary; Keller, Cherry

2004-01-01

Twenty five hundred thirty nine kilometers of airborne laser profiling and videography data were acquired over the state of Delaware during the summer of 2000. The laser ranging measurements and video from approximately one-half of that data set (1304 km) were analyzed to identify and locate forested sites that might potentially support populations of Delmarva fox squirrel (DFS, Sciurus niger cinereus). The DFS is an endangered species previously endemic to tall, dense, mature forests with open understories on the Eastern Shore of the Chesapeake Bay. The airborne LiDAR employed in this study can measure forest canopy height and canopy closure, but cannot measure or infer understory canopy conditions. Hence the LiDAR must be viewed as a tool to map potential, not actual, habitat. Fifty-three potentially suitable DFS sites were identified in the 1304 km of flight transect data. Each of the 53 sites met the following criteria according to the LiDAR and video record: (1 ) at least 120m of contiguous forest; (2) an average canopy height greater than 20m; (3) an average canopy closure of >80%; and (4) no roofs, impervious surface (e.g., asphalt, concrete), and/or open water anywhere along the 120m length of the laser segment. Thirty-two of the 53 sites were visited on the ground and measurements taken for a DFS habitat suitability model. Seventy eight percent of the sites (25 of 32) were judged by the model to be suited to supporting a DFS population. Twenty-eight of the 32 sites visited in the field were in forest cover types (hardwood, mixed wood, conifer, wetlands) according to a land cover GIS map. Of these, 23 (82%) were suited to support DFS. The remaining 4 sites were located in nonforest cover types - agricultural or residential areas. Two of the four, or 50% were suited to the DFS. All of the LiDAR flight data, 2539 km, were analyzed to

Preliminary study on multi-element profile mapping of crustal and mantle zircons by using Synchrotron Radiation X-ray Fluorescence (SR-XRF)

NASA Astrophysics Data System (ADS)

Hasözbek, Altug; Shyam, Badri; Siebel, Wolfgang; Schmitt, Axel; Akay, Erhan; Skinner, Lawrie

2013-04-01

Zircon (ZrSiO4) is a mineral of singular importance in the geosciences. Zircon microanalysis has greatly contributed to our understanding of key events in earth's history as certain radioactive heavy elements and their daughter products are well-preserved within the exceptionally stable inorganic matrix of the mineral. A prevailing notion in this field is that zircon, as a mineral, is predominantly a crustal mineral; this has been contested in the last few years with more reports of mantle-derived zircons (Siebel et al., 2009). Zircons enriched from different parts of the upper mantle to lower crust from Turkey (Hasozbek et al. 2010) and Germany (Siebel et al., 2009) will be presented in this study using SR-XRF mapping carried out at beamline 2-IDE at the Advanced Photon Source synchrotron facility (Argonne National Laboratory, USA). The high-resolution (5-10 µm) elemental maps were obtained with collimated and linearly polarized synchrotron radiation (10 to 17 keV) and possess the advantage of being a completely non-destructive technique. Elemental maps of various trace and rare-earth elements along the cross-section of the zircons reveal a zonation-related distribution, which may be used to reveal factors affecting the growth history and dynamics of the crystal formation. Further, abrupt changes in elemental distribution or concentration were found to correspond to faults or inclusions within the zircon crystal. If such observations are found to be applicable for a wide range of samples, elemental mapping with this technique may serve as an important qualitative diagnostic to locating µ-meter inclusions that may be challenging to identify using other techniques (ICP-MS LA, SHRIMP,…) Through these preliminary elemental profile mapping studies of crustal and mantle zircons using SR-XRF methods, we aim to highlight a relatively quick and promising analytical method that may be used to study various geological problems.

Basal-topographic control of stationary ponds on a continuously moving landslide

USGS Publications Warehouse

Coe, J.A.; McKenna, J.P.; Godt, J.W.; Baum, R.L.

2009-01-01

The Slumgullion landslide in the San Juan Mountains of southwestern Colorado has been moving for at least the last few hundred years and has multiple ponds on its surface. We have studied eight ponds during 30 trips to the landslide between July 1998 and July 2007. During each trip, we have made observations on the variability in pond locations and water levels, taken ground-based photographs to document pond water with respect to moving landslide material and vegetation, conducted Global Positioning System surveys of the elevations of water levels and mapped pond sediments on the landslide surface. Additionally, we have used stereo aerial photographs taken in October 1939, October 1940 and July 2000 to measure topographic profiles of the eight pond locations, as well as a longitudinal profile along the approximate centerline of the landslide, to examine topographic changes over a 60- to 61-year period of time. Results from field observations, analyses of photographs, mapping and measurements indicate that all pond locations have remained spatially stationary for 60-300 years while landslide material moves through these locations. Water levels during the observation period were sensitive to changes in the local, spring-fed, stream network, and to periodic filling of pond locations by sediment from floods, hyperconcentrated flows, mud flows and debris flows. For pond locations to remain stationary, the locations must mimic depressions along the basal surface of the landslide. The existence of such depressions indicates that the topography of the basal landslide surface is irregular. These results suggest that, for translational landslides that have moved distances larger than the dimensions of the largest basal topographic irregularities (about 200 m at Slumgullion), landslide surface morphology can be used as a guide to the morphology of the basal slip surface. Because basal slip surface morphology can affect landslide stability, kinematic models and stability analyses of translational landslides should attempt to incorporate irregular basal surface topography. Additional implications for moving landslides where basal topography controls surface morphology include the following: dateable sediments or organic material from basal layers of stationary ponds will yield ages that are younger than the date of landslide initiation, and it is probable that other landslide surface features such as faults, streams, springs and sinks are also controlled by basal topography. The longitudinal topographic profile indicated that the upper part of the Slumgullion landslide was depleted at a mean vertical lowering rate of 5.6 cm/yr between 1939 and 2000, while the toe advanced at an average rate of 1.5 m/yr during the same period. Therefore, during this 61-year period, neither the depletion of material at the head of the landslide nor continued growth of the landslide toe has decreased the overall movement rate of the landslide. Continued depletion of the upper part of the landslide, and growth of the toe, should eventually result in stabilization of the landslide. Copyright ?? 2008 John Wiley & Sons, Ltd.

Heterogeneous fractionation profiles of meta-analytic coactivation networks.

PubMed

Laird, Angela R; Riedel, Michael C; Okoe, Mershack; Jianu, Radu; Ray, Kimberly L; Eickhoff, Simon B; Smith, Stephen M; Fox, Peter T; Sutherland, Matthew T

2017-04-01

Computational cognitive neuroimaging approaches can be leveraged to characterize the hierarchical organization of distributed, functionally specialized networks in the human brain. To this end, we performed large-scale mining across the BrainMap database of coordinate-based activation locations from over 10,000 task-based experiments. Meta-analytic coactivation networks were identified by jointly applying independent component analysis (ICA) and meta-analytic connectivity modeling (MACM) across a wide range of model orders (i.e., d=20-300). We then iteratively computed pairwise correlation coefficients for consecutive model orders to compare spatial network topologies, ultimately yielding fractionation profiles delineating how "parent" functional brain systems decompose into constituent "child" sub-networks. Fractionation profiles differed dramatically across canonical networks: some exhibited complex and extensive fractionation into a large number of sub-networks across the full range of model orders, whereas others exhibited little to no decomposition as model order increased. Hierarchical clustering was applied to evaluate this heterogeneity, yielding three distinct groups of network fractionation profiles: high, moderate, and low fractionation. BrainMap-based functional decoding of resultant coactivation networks revealed a multi-domain association regardless of fractionation complexity. Rather than emphasize a cognitive-motor-perceptual gradient, these outcomes suggest the importance of inter-lobar connectivity in functional brain organization. We conclude that high fractionation networks are complex and comprised of many constituent sub-networks reflecting long-range, inter-lobar connectivity, particularly in fronto-parietal regions. In contrast, low fractionation networks may reflect persistent and stable networks that are more internally coherent and exhibit reduced inter-lobar communication. Copyright © 2017 Elsevier Inc. All rights reserved.

Heterogeneous fractionation profiles of meta-analytic coactivation networks

PubMed Central

Laird, Angela R.; Riedel, Michael C.; Okoe, Mershack; Jianu, Radu; Ray, Kimberly L.; Eickhoff, Simon B.; Smith, Stephen M.; Fox, Peter T.; Sutherland, Matthew T.

2017-01-01

Computational cognitive neuroimaging approaches can be leveraged to characterize the hierarchical organization of distributed, functionally specialized networks in the human brain. To this end, we performed large-scale mining across the BrainMap database of coordinate-based activation locations from over 10,000 task-based experiments. Meta-analytic coactivation networks were identified by jointly applying independent component analysis (ICA) and meta-analytic connectivity modeling (MACM) across a wide range of model orders (i.e., d = 20 to 300). We then iteratively computed pairwise correlation coefficients for consecutive model orders to compare spatial network topologies, ultimately yielding fractionation profiles delineating how “parent” functional brain systems decompose into constituent “child” sub-networks. Fractionation profiles differed dramatically across canonical networks: some exhibited complex and extensive fractionation into a large number of sub-networks across the full range of model orders, whereas others exhibited little to no decomposition as model order increased. Hierarchical clustering was applied to evaluate this heterogeneity, yielding three distinct groups of network fractionation profiles: high, moderate, and low fractionation. BrainMap-based functional decoding of resultant coactivation networks revealed a multi-domain association regardless of fractionation complexity. Rather than emphasize a cognitive-motor-perceptual gradient, these outcomes suggest the importance of inter-lobar connectivity in functional brain organization. We conclude that high fractionation networks are complex and comprised of many constituent sub-networks reflecting long-range, inter-lobar connectivity, particularly in fronto-parietal regions. In contrast, low fractionation networks may reflect persistent and stable networks that are more internally coherent and exhibit reduced inter-lobar communication. PMID:28222386

Transcriptome profiling of two maize inbreds with distinct responses to Gibberella ear rot disease to identify candidate resistance genes.

PubMed

Kebede, Aida Z; Johnston, Anne; Schneiderman, Danielle; Bosnich, Whynn; Harris, Linda J

2018-02-09

Gibberella ear rot (GER) is one of the most economically important fungal diseases of maize in the temperate zone due to moldy grain contaminated with health threatening mycotoxins. To develop resistant genotypes and control the disease, understanding the host-pathogen interaction is essential. RNA-Seq-derived transcriptome profiles of fungal- and mock-inoculated developing kernel tissues of two maize inbred lines were used to identify differentially expressed transcripts and propose candidate genes mapping within GER resistance quantitative trait loci (QTL). A total of 1255 transcripts were significantly (P ≤ 0.05) up regulated due to fungal infection in both susceptible and resistant inbreds. A greater number of transcripts were up regulated in the former (1174) than the latter (497) and increased as the infection progressed from 1 to 2 days after inoculation. Focusing on differentially expressed genes located within QTL regions for GER resistance, we identified 81 genes involved in membrane transport, hormone regulation, cell wall modification, cell detoxification, and biosynthesis of pathogenesis related proteins and phytoalexins as candidate genes contributing to resistance. Applying droplet digital PCR, we validated the expression profiles of a subset of these candidate genes from QTL regions contributed by the resistant inbred on chromosomes 1, 2 and 9. By screening global gene expression profiles for differentially expressed genes mapping within resistance QTL regions, we have identified candidate genes for gibberella ear rot resistance on several maize chromosomes which could potentially lead to a better understanding of Fusarium resistance mechanisms.

Intelligent mapping of alluvial aquifer characteristics in the Otago region, New Zealand

NASA Astrophysics Data System (ADS)

Friedel, Michael; Rawlinson, Zara; Westerhoff, Rogier

2015-04-01

We adopt a hybrid approach to map the 3D hydrostratigraphy of an alluvial aquifer using big data collected in the Ettrick basin, Otago New Zealand. First, a subset (1%) of the 18 million regional helicopter frequency-domain electromagnetic (HEM) sounding measurements (300 Hz, Horizontal co-planar; 3300 Hz, vertical co-planar; 8200 Hz, horizontal co-planar; 40 kHz, horizontal co-planar; 137 kHz horizontal coplanar) and their numerically-inverted 1D resistivity (50¬-100 Ω-m) profiles are randomly split. For example, 50% of these data are used for training an unsupervised machine-learning (ML) network, and 50% of these data are used for performance at independent locations. The remaining set of HEM measurements are then presented to the vetted ML network to estimate regional resistivity structure which is compared to previously inverted resistivity. Second, about 50 borehole autocorrelation functions are computed based on cross-component correlations of quantized borehole locations sampled for lithology and HEM sounding data. Third, an unsupervised ML network is trained and performance tested using sparse borehole lithology (fractions of sand, silt, clay, mudstone, schist) and hydraulic properties (storage, hydraulic conductivity), and those HEM sounding data occurring within a radius defined by the maximum borehole autocorrelation distances. Fourth, this ML network is then used together with independent HEM sounding measurements to map the spatial distribution of physical aquifer properties and hydraulic properties across the basin.

Automatic Detection and Evaluation of Solar Cell Micro-Cracks in Electroluminescence Images Using Matched Filters

DOE Office of Scientific and Technical Information (OSTI.GOV)

Spataru, Sergiu; Hacke, Peter; Sera, Dezso

A method for detecting micro-cracks in solar cells using two dimensional matched filters was developed, derived from the electroluminescence intensity profile of typical micro-cracks. We describe the image processing steps to obtain a binary map with the location of the micro-cracks. Finally, we show how to automatically estimate the total length of each micro-crack from these maps, and propose a method to identify severe types of micro-cracks, such as parallel, dendritic, and cracks with multiple orientations. With an optimized threshold parameter, the technique detects over 90 % of cracks larger than 3 cm in length. The method shows great potentialmore » for quantifying micro-crack damage after manufacturing or module transportation for the determination of a module quality criterion for cell cracking in photovoltaic modules.« less

Combined geophysical investigation for the detection of ancient metallurgical installations near Keratea City, Greece

NASA Astrophysics Data System (ADS)

Apostolopoulos, George V.

2014-05-01

Archaeological excavation in an area of Lavrio (mining area from ancient times) has revealed ancient metallurgical installations which offer valuable information on this activity at those times. Within this context, a combined geophysical investigation was carried out in a place near Keratea City to find out whether there are additional installations apart from those that have already been revealed in the immediate area. More importantly, the objective was to locate the ancient tanks which provided water to the installations. Archaeological and geological information have helped in the design of the survey. EMI method measuring apparent conductivity was used to cover the whole area of investigation. Conductivity maps in various investigation depths have positioned the tanks and stacked first derivative maps in two directions (the two directions of the revealed walls) show covered walls. The EMI survey has indicated the position of three (3) ERT profiles made with the dipole-dipole array, which presented the ancient tanks with great detail in depth. GPR profiles for the detection of walls were noisy with the coarse material surface layer but the interrelation with ERT and EMI results confirmed the detected features.

Culture phenotypes and molecular characterization of Mycobacterium avium subsp. paratuberculosis isolates from small ruminants.

PubMed

Dimareli-Malli, Z; Mazaraki, K; Stevenson, K; Tsakos, P; Zdragas, A; Giantzi, V; Petridou, E; Heron, I; Vafeas, G

2013-08-01

In this study the suitability of different solid media was investigated for the isolation of Mycobacterium avium subsp. paratuberculosis (Map) in order to identify the optimum single or combination of media to permit the isolation of all strain types from small ruminants. A subset of these Map strains was then further characterized by molecular typing methods to assess the genetic diversity of Map strains in the study area (Northern Greece). Map strains were isolated from tissues and faeces of infected goats (n=52) and sheep (n=8) and were analysed for polymorphisms in IS1311 to classify the strain type as Type C or S. The study found that M7H11 supplemented with mycobactin j, OADC and new born calf serum (M7H11+Mj) is the best single choice of medium for the primary isolation of Map of both Type C and S from small ruminants. The combination of M7H11+Mj and Herrolds egg yolk medium supplemented with mycobactin j and sodium pyruvate allowed the detection of all Map isolates in this study. Nineteen Map isolates were characterised by pulsed-field gel electrophoresis and the isolates demonstrated significant genetic diversity. Twelve different SnaBI and 16 distinct SpeI profiles were detected of which 25 have not been described previously and are new profiles. The combination of both enzyme profiles gave 13 different multiplex profiles. Ten different multiplex profiles were detected in goats and three in sheep. One ovine isolate gave the same multiplex profile as a caprine isolate and two different profiles were found within a single goat herd. Copyright © 2013 Elsevier Ltd. All rights reserved.

Nure aerial gamma-ray and magnetic reconnaissance survey: Chugach/Yakutat area, Alaska, Mt. Saint Elias Quadrangle

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1978-10-01

Volume II contains the following data on Mt. Saint Elias, Alaska: geologic base map, flight path map, anomaly maps (U, Th, K, UlTh, UlK, ThlK), radiometric multiple-parameter stacked profiles, magnetic and ancillary profile data, and statistical data. (LK)

Laser-diagnostic mapping of temperature and soot statistics in a 2-m diameter turbulent pool fire

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kearney, Sean P.; Grasser, Thomas W.

We present spatial profiles of temperature and soot-volume-fraction statistics from a sooting 2-m base diameter turbulent pool fire, burning a 10%-toluene / 90%-methanol fuel mixture. Dual-pump coherent anti-Stokes Raman scattering and laser-induced incandescence are utilized to obtain radial profiles of temperature and soot probability density functions (pdf) as well as estimates of temperature/soot joint statistics at three vertical heights above the surface of the methanol/toluene fuel pool. Results are presented both in the fuel vapor-dome region at ¼ base diameter and in the actively burning region at ½ and ¾ diameters above the fuel surface. The spatial evolution of themore » soot and temperature pdfs is discussed and profiles of the temperature and soot mean and rms statistics are provided. Joint temperature/soot statistics are presented as spatially resolved conditional averages across the fire plume, and in terms of a joint pdf obtained by including measurements from multiple spatial locations.« less

Laser-diagnostic mapping of temperature and soot statistics in a 2-m diameter turbulent pool fire

DOE PAGES

Kearney, Sean P.; Grasser, Thomas W.

2017-08-10

We present spatial profiles of temperature and soot-volume-fraction statistics from a sooting 2-m base diameter turbulent pool fire, burning a 10%-toluene / 90%-methanol fuel mixture. Dual-pump coherent anti-Stokes Raman scattering and laser-induced incandescence are utilized to obtain radial profiles of temperature and soot probability density functions (pdf) as well as estimates of temperature/soot joint statistics at three vertical heights above the surface of the methanol/toluene fuel pool. Results are presented both in the fuel vapor-dome region at ¼ base diameter and in the actively burning region at ½ and ¾ diameters above the fuel surface. The spatial evolution of themore » soot and temperature pdfs is discussed and profiles of the temperature and soot mean and rms statistics are provided. Joint temperature/soot statistics are presented as spatially resolved conditional averages across the fire plume, and in terms of a joint pdf obtained by including measurements from multiple spatial locations.« less

Neural network evaluation of tokamak current profiles for real time control

NASA Astrophysics Data System (ADS)

Wróblewski, Dariusz

1997-02-01

Active feedback control of the current profile, requiring real-time determination of the current profile parameters, is envisioned for tokamaks operating in enhanced confinement regimes. The distribution of toroidal current in a tokamak is now routinely evaluated based on external (magnetic probes, flux loops) and internal (motional Stark effect) measurements of the poloidal magnetic field. However, the analysis involves reconstruction of magnetohydrodynamic equilibrium and is too intensive computationally to be performed in real time. In the present study, a neural network is used to provide a mapping from the magnetic measurements (internal and external) to selected parameters of the safety factor profile. The single-pass, feedforward calculation of output of a trained neural network is very fast, making this approach particularly suitable for real-time applications. The network was trained on a large set of simulated equilibrium data for the DIII-D tokamak. The database encompasses a large variety of current profiles including the hollow current profiles important for reversed central shear operation. The parameters of safety factor profile (a quantity related to the current profile through the magnetic field tilt angle) estimated by the neural network include central safety factor, q0, minimum value of q, qmin, and the location of qmin. Very good performance of the trained neural network both for simulated test data and for experimental datais demonstrated.

Neural network evaluation of tokamak current profiles for real time control (abstract)

NASA Astrophysics Data System (ADS)

Wróblewski, Dariusz

1997-01-01

Active feedback control of the current profile, requiring real-time determination of the current profile parameters, is envisioned for tokamaks operating in enhanced confinement regimes. The distribution of toroidal current in a tokamak is now routinely evaluated based on external (magnetic probes, flux loops) and internal (motional Stark effect) measurements of the poloidal magnetic field. However, the analysis involves reconstruction of magnetohydrodynamic equilibrium and is too intensive computationally to be performed in real time. In the present study, a neural network is used to provide a mapping from the magnetic measurements (internal and external) to selected parameters of the safety factor profile. The single-pass, feedforward calculation of output of a trained neural network is very fast, making this approach particularly suitable for real-time applications. The network was trained on a large set of simulated equilibrium data for the DIII-D tokamak. The database encompasses a large variety of current profiles including the hollow current profiles important for reversed central shear operation. The parameters of safety factor profile (a quantity related to the current profile through the magnetic field tilt angle) estimated by the neural network include central safety factor, q0, minimum value of q, qmin, and the location of qmin. Very good performance of the trained neural network both for simulated test data and for experimental data is demonstrated.

Retinal nerve fiber layer thickness map and blood flow pulsation measured with SDOCT

NASA Astrophysics Data System (ADS)

Mujat, Mircea; Chan, Raymond C.; Cense, Barry; Pierce, Mark; Park, Hyle; Joo, Chulmin; Chen, Teresa C.; de Boer, Johannes F.

2006-02-01

Spectral-Domain Optical Coherence Tomography (SDOCT) allows for in-vivo video-rate investigation of biomedical tissue depth structure intended for non-invasive optical diagnostics. It has been suggested that OCT can be used for di-agnosis of glaucoma by measuring the thickness of the Retinal Nerve Fiber Layer (RNLF). We present an automated method for determining the RNFL thickness from a 3-D dataset based on edge detection using a deformable spline algo-rithm. The RNFL thickness map is combined with an integrated reflectance map and retinal cross-sectional images to provide the ophthalmologist with a familiar image for interpreting the OCT data. The video-rate capabilities of our SDOCT system allow for mapping the true retinal topography since motion artifacts are significantly reduced as com-pared to slower time-domain systems. Combined with Doppler Velocimetry, SDOCT also provides information on retinal blood flow dynamics. We analyzed the pulsatile nature of the bidirectional flow dynamics in an artery-vein pair for a healthy volunteer at different locations and for different blood vessel diameters. The Doppler phase shift is determined as the phase difference at the same point of adjacent depth profiles, and is integrated over the area delimited by two circles corresponding to the blood vessels location. Its temporal evolution clearly shows the blood flow pulsatile nature, the cardiac cycle, in both artery and vein. The artery is identified as having a stronger variation of the integrated phase shift. We observe that artery pulsation is always easily detectable, while vein pulsation seems to depend on the veins diameter.

Superior cognitive mapping through single landmark-related learning than through boundary-related learning.

PubMed

Zhou, Ruojing; Mou, Weimin

2016-08-01

Cognitive mapping is assumed to be through hippocampus-dependent place learning rather than striatum-dependent response learning. However, we proposed that either type of spatial learning, as long as it involves encoding metric relations between locations and reference points, could lead to a cognitive map. Furthermore, the fewer reference points to specify individual locations, the more accurate a cognitive map of these locations will be. We demonstrated that participants have more accurate representations of vectors between 2 locations and of configurations among 3 locations when locations are individually encoded in terms of a single landmark than when locations are encoded in terms of a boundary. Previous findings have shown that learning locations relative to a boundary involve stronger place learning and higher hippocampal activation whereas learning relative to a single landmark involves stronger response learning and higher striatal activation. Recognizing this, we have provided evidence challenging the cognitive map theory but favoring our proposal. (PsycINFO Database Record (c) 2016 APA, all rights reserved).

Field-based Digital Mapping of the November 3, 2002 Susitna Glacier Fault Rupture - Integrating remotely sensed data, GIS, and photo-linking technologies

NASA Astrophysics Data System (ADS)

Staft, L. A.; Craw, P. A.

2003-12-01

In July 2003, the U.S. Geological Survey and the Alaska Division of Geological & Geophysical Surveys (DGGS) conducted field studies on the Susitna Glacier Fault (SGF), which ruptured on November 2002 during the M 7.9 Denali fault earthquake. The DGGS assumed responsibility for Geographic Information System (GIS) and data management, integrating remotely sensed imagery, GPS data, GIS, and photo-linking software to aid in planning and documentation of fieldwork. Pre-field preparation included acquisition of over 150, 1:6,000-scale true-color aerial photographs taken shortly after the SGF rupture, 1:63,360-scale color-infrared (CIR) 1980 aerial photographs, and digital geographic information including a 15-minute Digital Elevation Model (DEM), 1:63,360-scale Digital Raster Graphics (DRG), and LandSat 7 satellite imagery. Using Orthomapper software, we orthorectified and mosaiced seven CIRs, creating a georeferenced, digital photo base of the study area. We used this base to reference the 1:6,000-scale aerial photography, to view locations of field sites downloaded from GPS, and to locate linked digital photographs that were taken in the field. Photos were linked using GPS-Photo Link software which "links" digital photographs to GPS data by correlating time stamps from the GPS track log or waypoint file to those of the digital photos, using the correlated point data to create a photo location ESRI shape file. When this file is opened in ArcMap or ArcView with the GPS-Photo Link utility enabled, a thumbnail image of the linked photo appears when the cursor is over the photo location. Viewing photographed features and scarp-profile locations in GIS allowed us to evaluate data coverage of the rupture daily. Using remotely sensed imagery in the field with GIS gave us the versatility to display data on a variety of bases, including topographic maps, air photos, and satellite imagery, during fieldwork. In the field, we downloaded, processed, and reviewed data as it was collected, taking major steps toward final digital map production. Using the described techniques greatly enhanced our ability to analyze and interpret field data; the resulting digital data structure allows us to efficiently gather, disseminate, and archive critical field data.

Archive of Boomer and Chirp Seismic Reflection Data Collected During USGS Cruise 01RCE02, Southern Louisiana, April and May 2001

USGS Publications Warehouse

Calderon, Karynna; Dadisman, Shawn V.; Flocks, James G.; Wiese, Dana S.

2003-01-01

In April and May of 2001, the U.S. Geological Survey conducted a geophysical study of the Mississippi River Delta, Atchafalaya River Delta, and Shell Island Pass in southern Louisiana. This study was part of a larger USGS River Contaminant Evaluation (RCE) Project. This disc serves as an archive of unprocessed digital seismic reflection data, trackline navigation files, shotpoint navigation maps, observers' logbooks, GIS information, and formal Federal Geographic Data Committee (FGDC) metadata. In addition, a filtered and gained digital GIF-formatted image of each seismic profile is provided. For your convenience, a list of acronyms and abbreviations frequently used in this report has also been provided. This DVD (Digital Versatile Disc) document is readable on any computing platform that has standard DVD driver software installed. Documentation on this DVD was produced using Hyper Text Markup Language (HTML) utilized by the World Wide Web (WWW) and allows the user to access the information by using a web browser (i.e. Netscape or Internet Explorer). To access the information contained on this disc, open the file 'index.htm' located at the top level of the disc using your web browser. This report also contains WWW links to USGS collaborators and other agencies. These links are only accessible if access to the internet is available while viewing the DVD. The archived boomer and chirp seismic reflection data are in standard Society of Exploration Geophysicists (SEG) SEG-Y format (Barry et al., 1975) and may be downloaded for processing with public domain software such as Seismic Unix (SU), currently located at http://www.cwp.mines.edu/cwpcodes. Examples of SU processing scripts are provided in the boom.tar and chirp.tar files located in the SU subfolder of the SOFTWARE folder located at the top level of this DVD. In-house (USGS) DOS and Microsoft Windows compatible software for viewing SEG-Y headers - DUMPSEGY.EXE (Zilhman, 1992) - is provided in the USGS subfolder of the SOFTWARE folder. Processed profile images, shotpoint navigation maps, logbooks, and formal metadata may be viewed with your web browser.

MGDS: Free, on-line, cutting-edge tools to enable the democratisation of geoscience data

NASA Astrophysics Data System (ADS)

Goodwillie, A. M.; Ryan, W. B.; O'Hara, S.; Ferrini, V.; Arko, R. A.; Coplan, J.; Chan, S.; Carbotte, S. M.; Nitsche, F. O.; Bonczkowski, J.; Morton, J. J.; Weissel, R.; Leung, A.

2010-12-01

The availability of user-friendly, effective cyber-information resources for accessing and manipulating geoscience data has grown rapidly in recent years. Based at Lamont-Doherty Earth Observatory the MGDS group has developed a number of free tools that have wide application across the geosciences for both educators and researchers. A simple web page (http://www.marine-geo.org/) allows users to search for and download many types of data by key word, geographical region, or published citation. The popular Create Maps and Grids function and the downloadable Google Earth-compatible KML files appeal to a wide user base. MGDS MediaBank galleries (http://media.marine-geo.org/) enable users to view and download compelling images that are purposefully selected for their educational value from NSF-funded field programs. GeoMapApp (http://www.geomapapp.org), a free map-based interactive tool that works on any machine, is increasingly being adopted across a broad suite of users from middle school students to university researchers. GeoMapApp allows users to plot, manipulate and present data in an intuitive geographical reference frame. GeoMapApp offers a convenient way to explore the wide range of built-in data sets, to quickly generate maps and images that aid visualisation and, when importing their own gridded and tabular data sets, to access the same rich built-in functionality. A user guide, short multi-media tutorials, and webinar are available on-line. The regularly-updated Global Multi-Resolution Topography (GMRT) Synthesis is used as the default GeoMapApp base map and is an increasingly popular means to rapidly create location maps. Additionally, the layer manager offers a fast way to overlay and compare multiple data sets and is augmented by the ability to alter layer transparency so that underlying layers become visible. Examples of GeoMapApp built-in data sets include high-resolution land topography and ocean floor bathymetry derived from satellite and multi-beam swath mapping systems - these can be profiled, shaded, and contoured; geo-registered geochemical sample analyses from the EarthChem database; plate boundary, earthquake and volcano catalogues; physical oceanography global and water column data; seafloor photos and Alvin dive video images; geological maps at various scales; and, high-quality coastline, lakes and rivers data. Customised data portals offer enhanced functionality for multi-channel seismic profiles, drill core logs, and earthquake animations. GeoMapApp is used in many MARGINS undergraduate-level off-the-shelf interactive learning activities called mini-lessons (http://serc.carleton.edu/margins/collection.html). Examples of educational applicability will be shown.

sscMap: an extensible Java application for connecting small-molecule drugs using gene-expression signatures.

PubMed

Zhang, Shu-Dong; Gant, Timothy W

2009-07-31

Connectivity mapping is a process to recognize novel pharmacological and toxicological properties in small molecules by comparing their gene expression signatures with others in a database. A simple and robust method for connectivity mapping with increased specificity and sensitivity was recently developed, and its utility demonstrated using experimentally derived gene signatures. This paper introduces sscMap (statistically significant connections' map), a Java application designed to undertake connectivity mapping tasks using the recently published method. The software is bundled with a default collection of reference gene-expression profiles based on the publicly available dataset from the Broad Institute Connectivity Map 02, which includes data from over 7000 Affymetrix microarrays, for over 1000 small-molecule compounds, and 6100 treatment instances in 5 human cell lines. In addition, the application allows users to add their custom collections of reference profiles and is applicable to a wide range of other 'omics technologies. The utility of sscMap is two fold. First, it serves to make statistically significant connections between a user-supplied gene signature and the 6100 core reference profiles based on the Broad Institute expanded dataset. Second, it allows users to apply the same improved method to custom-built reference profiles which can be added to the database for future referencing. The software can be freely downloaded from http://purl.oclc.org/NET/sscMap.

LC-MS/MS Peptide Mapping with Automated Data Processing for Routine Profiling of N-Glycans in Immunoglobulins

NASA Astrophysics Data System (ADS)

Shah, Bhavana; Jiang, Xinzhao Grace; Chen, Louise; Zhang, Zhongqi

2014-06-01

Protein N-Glycan analysis is traditionally performed by high pH anion exchange chromatography (HPAEC), reversed phase liquid chromatography (RPLC), or hydrophilic interaction liquid chromatography (HILIC) on fluorescence-labeled glycans enzymatically released from the glycoprotein. These methods require time-consuming sample preparations and do not provide site-specific glycosylation information. Liquid chromatography-tandem mass spectrometry (LC-MS/MS) peptide mapping is frequently used for protein structural characterization and, as a bonus, can potentially provide glycan profile on each individual glycosylation site. In this work, a recently developed glycopeptide fragmentation model was used for automated identification, based on their MS/MS, of N-glycopeptides from proteolytic digestion of monoclonal antibodies (mAbs). Experimental conditions were optimized to achieve accurate profiling of glycoforms. Glycan profiles obtained from LC-MS/MS peptide mapping were compared with those obtained from HPAEC, RPLC, and HILIC analyses of released glycans for several mAb molecules. Accuracy, reproducibility, and linearity of the LC-MS/MS peptide mapping method for glycan profiling were evaluated. The LC-MS/MS peptide mapping method with fully automated data analysis requires less sample preparation, provides site-specific information, and may serve as an alternative method for routine profiling of N-glycans on immunoglobulins as well as other glycoproteins with simple N-glycans.

Mapping Error in Southern Ocean Transport Computed from Satellite Altimetry and Argo

NASA Astrophysics Data System (ADS)

Kosempa, M.; Chambers, D. P.

2016-02-01

Argo profiling floats afford basin-scale coverage of the Southern Ocean since 2005. When density estimates from Argo are combined with surface geostrophic currents derived from satellite altimetry, one can estimate integrated geostrophic transport above 2000 dbar [e.g., Kosempa and Chambers, JGR, 2014]. However, the interpolation techniques relied upon to generate mapped data from Argo and altimetry will impart a mapping error. We quantify this mapping error by sampling the high-resolution Southern Ocean State Estimate (SOSE) at the locations of Argo floats and Jason-1, and -2 altimeter ground tracks, then create gridded products using the same optimal interpolation algorithms used for the Argo/altimetry gridded products. We combine these surface and subsurface grids to compare the sampled-then-interpolated transport grids to those from the original SOSE data in an effort to quantify the uncertainty in volume transport integrated across the Antarctic Circumpolar Current (ACC). This uncertainty is then used to answer two fundamental questions: 1) What is the minimum linear trend that can be observed in ACC transport given the present length of the instrument record? 2) How long must the instrument record be to observe a trend with an accuracy of 0.1 Sv/year?

Quantifying the uncertainty in site amplification modeling and its effects on site-specific seismic-hazard estimation in the upper Mississippi embayment and adjacent areas

USGS Publications Warehouse

Cramer, C.H.

2006-01-01

The Mississippi embayment, located in the central United States, and its thick deposits of sediments (over 1 km in places) have a large effect on earthquake ground motions. Several previous studies have addressed how these thick sediments might modify probabilistic seismic-hazard maps. The high seismic hazard associated with the New Madrid seismic zone makes it particularly important to quantify the uncertainty in modeling site amplification to better represent earthquake hazard in seismic-hazard maps. The methodology of the Memphis urban seismic-hazard-mapping project (Cramer et al., 2004) is combined with the reference profile approach of Toro and Silva (2001) to better estimate seismic hazard in the Mississippi embayment. Improvements over previous approaches include using the 2002 national seismic-hazard model, fully probabilistic hazard calculations, calibration of site amplification with improved nonlinear soil-response estimates, and estimates of uncertainty. Comparisons are made with the results of several previous studies, and estimates of uncertainty inherent in site-amplification modeling for the upper Mississippi embayment are developed. I present new seismic-hazard maps for the upper Mississippi embayment with the effects of site geology incorporating these uncertainties.

Profiles of California vegetation

Treesearch

William B. Critchfield

1971-01-01

This publication brings together 57 elevational profiles illustrating the dominant vegetation of much of the Sierra Nevada, southern Coast Ranges, and montane southern California as it existed in the 1930's. The profiles were drawn by Michael N. Dobrotin for the U.S. Forest Service's Vegetation Type Map survey, which mapped nearly half of the State's...

Mapping Potential Amplification and Transmission Hotspots for MERS-CoV, Kenya.

PubMed

Gikonyo, Stephen; Kimani, Tabitha; Matere, Joseph; Kimutai, Joshua; Kiambi, Stella G; Bitek, Austine O; Juma Ngeiywa, K J Z; Makonnen, Yilma J; Tripodi, Astrid; Morzaria, Subhash; Lubroth, Juan; Rugalema, Gabriel; Fasina, Folorunso Oludayo

2018-03-16

Dromedary camels have been implicated consistently as the source of Middle East respiratory syndrome coronavirus (MERS-CoV) human infections and attention to prevent and control it has focused on camels. To understanding the epidemiological role of camels in the transmission of MERS-CoV, we utilized an iterative empirical process in Geographic Information System (GIS) to identify and qualify potential hotspots for maintenance and circulation of MERS-CoV, and produced risk-based surveillance sites in Kenya. Data on camel population and distribution were used to develop camel density map, while camel farming system was defined using multi-factorial criteria including the agro-ecological zones (AEZs), production and marketing practices. Primary and secondary MERS-CoV seroprevalence data from specific sites were analyzed, and location-based prevalence matching with camel densities was conducted. High-risk convergence points (migration zones, trade routes, camel markets, slaughter slabs) were profiled and frequent cross-border camel movement mapped. Results showed that high camel-dense areas and interaction (markets and migration zones) were potential hotspot for transmission and spread. Cross-border contacts occurred with in-migrated herds at hotspot locations. AEZ differential did not influence risk distribution and plausible risk factors for spatial MERS-CoV hotspots were camel densities, previous cases of MERS-CoV, high seroprevalence and points of camel convergences. Although Kenyan camels are predisposed to MERS-CoV, no shedding is documented to date. These potential hotspots, determined using anthropogenic, system and trade characterizations should guide selection of sampling/surveillance sites, high-risk locations, critical areas for interventions and policy development in Kenya, as well as instigate further virological examination of camels.

Cortical connective field estimates from resting state fMRI activity.

PubMed

Gravel, Nicolás; Harvey, Ben; Nordhjem, Barbara; Haak, Koen V; Dumoulin, Serge O; Renken, Remco; Curčić-Blake, Branislava; Cornelissen, Frans W

2014-01-01

One way to study connectivity in visual cortical areas is by examining spontaneous neural activity. In the absence of visual input, such activity remains shaped by the underlying neural architecture and, presumably, may still reflect visuotopic organization. Here, we applied population connective field (CF) modeling to estimate the spatial profile of functional connectivity in the early visual cortex during resting state functional magnetic resonance imaging (RS-fMRI). This model-based analysis estimates the spatial integration between blood-oxygen level dependent (BOLD) signals in distinct cortical visual field maps using fMRI. Just as population receptive field (pRF) mapping predicts the collective neural activity in a voxel as a function of response selectivity to stimulus position in visual space, CF modeling predicts the activity of voxels in one visual area as a function of the aggregate activity in voxels in another visual area. In combination with pRF mapping, CF locations on the cortical surface can be interpreted in visual space, thus enabling reconstruction of visuotopic maps from resting state data. We demonstrate that V1 ➤ V2 and V1 ➤ V3 CF maps estimated from resting state fMRI data show visuotopic organization. Therefore, we conclude that-despite some variability in CF estimates between RS scans-neural properties such as CF maps and CF size can be derived from resting state data.

Characterization of C/Enhanced SiC Composite During Creep-Rupture Tests Using an Ultrasonic Guided Wave Scan System

NASA Technical Reports Server (NTRS)

Roth, Don J.; Verrilli, Michael J.; Martin, Richard E.; Cosgriff, Laura M.

2004-01-01

An ultrasonic guided wave scan system was used to nondestructively monitor damage over time and position in a C/enhanced SiC sample that was creep tested to failure at 1200 C in air at a stress of 69 MPa (10 ksi). The use of the guided wave scan system for mapping evolving oxidation profiles (via porosity gradients resulting from oxidation) along the sample length and predicting failure location was explored. The creep-rupture tests were interrupted for ultrasonic evaluation every two hours until failure at approx. 17.5 cumulative hours.

Using DoD Maps to Examine the Influence of Large Wood on Channel Morphodynamics

NASA Astrophysics Data System (ADS)

MacKenzie, L. C.; Eaton, B. C.

2012-12-01

Since the advent of logging and slash burning, many streams in British Columbia have experienced changes to the amount of large wood added to or removed from these systems, which has, in turn, influenced the storage and movement of sediment within these channels. This set of flume experiments examines and quantifies the impacts of large wood on the reach-scale morphodynamics. Understanding the relation between the wood load and channel morphodynamics is important when assessing the quality of the aquatic habitat of a stream. The experiments were conducted using a fixed-bank, mobile bed Froude-scaled physical model of Fishtrap Creek, British Columbia, built in a shallow flume that is 1.5 m wide and 11 m long. The stream table was run without wood until it reached equilibrium at which point wood pieces of varying sizes were added to the channel. The bed morphology was surveyed using a laser profiling system at five-hour intervals. The laser profiles were then interpolated to create digital elevation models (DEM) from which DEM of difference (DoD) maps were produced. Analysis of the DoD maps focused on quantifying and locating differences in the distribution of sediment storage, erosion, and deposition between the runs as well as those induced by the addition of large wood into the stream channel. We then assessed the typical influence of individual pieces and of jams on pool frequency, size and distribution along the channels.

Imaging the concealed section of the Whakatane fault below Whakatane city, New Zealand, with a shear wave land streamer system

NASA Astrophysics Data System (ADS)

Polom, Ulrich; Mueller, Christof; Krawczyk, CharLotte M.

2016-04-01

The Mw 7.1 Darfield Earthquake in September 2010 ruptured the surface along the Greendale Fault that was not known prior to the earthquake. The subsequent Mw 6.3 Christchurch earthquake in February 2011 demonstrated that concealed active faults have a significant risk potential for urban infrastructure and human life in New Zealand if they are located beneath or close to such areas. Mapping exposures and analysis of active faults incorporated into the National Seismic Hazard Model (NSHM) suggests that several thousands of these active structures are yet to be identified and have the potential to generate moderate to large magnitude earthquakes (i.e. magnitudes >5). Geological mapping suggests that active faults pass beneath, or within many urban areas in New Zealand, including Auckland, Blenheim, Christchurch, Hastings/Napier, Nelson, Rotorua, Taupo, Wellington, and Whakatane. Since no established methodology for routinely locating and assessing the earthquake hazard posed by concealed active faults is available, the principal objective of the presented study was to evaluate the usefulness of high-resolution shear wave seismic reflection profiling using a land streamer to locate buried faults in urban areas of New Zealand. During the survey carried out in the city of Whakatane in February 2015, the method was first tested over a well known surface outcrop of the Edgecumbe Fault 30 km south-west of Whakatane city. This allowed further to investigate the principle shear wave propagation characteristics in the unknown sediments, consisting mainly of effusive rock material of the Taupo volcanic zone mixed with marine transgression units. Subsequently the survey was continued within Whakatane city using night operation time slots to reduce the urban noise. In total, 11 profiles of 5.7 km length in high data quality were acquired, which clearly show concealed rupture structures of obviously different age in the shallow sediments down to 100 m depth. Subject to depth verification by drillings normal fault displacements of up to 15 m are visible in depths of 20-40 m, deeper rupture structures show displacements of up to 20 m. Furthermore, indications of strike-slip fault activities are visible. The concealed rupture structures found are not aligned along former estimated fault lineaments or main surface structures like the Whakatane river bed. Correlations exist with small topographic variations detected by LIDAR imaging and surface signatures on a historic map of 1867.

Comprehensive QTL mapping survey dissects the complex fruit texture physiology in apple (Malus x domestica Borkh.).

PubMed

Longhi, Sara; Moretto, Marco; Viola, Roberto; Velasco, Riccardo; Costa, Fabrizio

2012-02-01

Fruit ripening is a complex physiological process in plants whereby cell wall programmed changes occur mainly to promote seed dispersal. Cell wall modification also directly regulates the textural properties, a fundamental aspect of fruit quality. In this study, two full-sib populations of apple, with 'Fuji' as the common maternal parent, crossed with 'Delearly' and 'Pink Lady', were used to understand the control of fruit texture by QTL mapping and in silico gene mining. Texture was dissected with a novel high resolution phenomics strategy, simultaneously profiling both mechanical and acoustic fruit texture components. In 'Fuji × Delearly' nine linkage groups were associated with QTLs accounting from 15.6% to 49% of the total variance, and a highly significant QTL cluster for both textural components was mapped on chromosome 10 and co-located with Md-PG1, a polygalacturonase gene that, in apple, is known to be involved in cell wall metabolism processes. In addition, other candidate genes related to Md-NOR and Md-RIN transcription factors, Md-Pel (pectate lyase), and Md-ACS1 were mapped within statistical intervals. In 'Fuji × Pink Lady', a smaller set of linkage groups associated with the QTLs identified for fruit texture (15.9-34.6% variance) was observed. The analysis of the phenotypic variance over a two-dimensional PCA plot highlighted a transgressive segregation for this progeny, revealing two QTL sets distinctively related to both mechanical and acoustic texture components. The mining of the apple genome allowed the discovery of the gene inventory underlying each QTL, and functional profile assessment unravelled specific gene expression patterns of these candidate genes.

77 FR 55785 - Proposed Flood Elevation Determinations; Correction

Federal Register 2010, 2011, 2012, 2013, 2014

2012-09-11

... stream reach between the referenced locations above. Please refer to the revised Flood Insurance Rate Map located at the community map repository (see below) for exact locations of all BFEs to be changed. Send... Mechanicsville Maps are available for inspection at the Borough Hall, 1342 Pottsville Street, Mechanicsville, PA...

77 FR 46994 - Proposed Flood Elevation Determinations

Federal Register 2010, 2011, 2012, 2013, 2014

2012-08-07

... referenced locations above. Please refer to the revised Flood Insurance Rate Map located at the community map repository (see below) for exact locations of all BFEs to be changed. Send comments to Luis Rodriguez, Chief... Agency, 500 C Street SW., Washington, DC 20472. ADDRESSES City of Cleveland Maps are available for...

Allinea Parallel Profiling and Debugging Tools on the Peregrine System |

Science.gov Websites

client for your platform. (Mac/Windows/Linux) Configuration to connect to Peregrine: Open the Allinea view it # directly through x11 forwarding just type 'map', # it will open a GUI. $ map # to profile an enable x-forwarding when connecting to # Peregrine. $ map # This will open the GUI Debugging using

Geographic information systems (GIS): an emerging method to assess demand and provision for rehabilitation services.

PubMed

Passalent, Laura; Borsy, Emily; Landry, Michel D; Cott, Cheryl

2013-09-01

To illustrate the application of geographic information systems (GIS) as a tool to assess rehabilitation service delivery by presenting results from research recently conducted to assess demand and provision for community rehabilitation service delivery in Ontario, Canada. Secondary analysis of data obtained from existing sources was used to establish demand and provision profiles for community rehabilitation services. These data were integrated using GIS software. A number of descriptive maps were produced that show the geographical distribution of service provision variables (location of individual rehabilitation health care providers and location of private and publicly funded community rehabilitation clinics) in relation to the distribution of demand variables (location of the general population; location of specific populations (i.e., residents age 65 and older) and distribution of household income). GIS provides a set of tools for describing and understanding the spatial organization of the health of populations and the distribution of health services that can aid the development of health policy and answer key research questions with respect to rehabilitation health services delivery. Implications for Rehabilitation It is important to seek out alternative and innovative methods to examine rehabilitation service delivery. GIS is a computer-based program that takes any data linked to a geographically referenced location and processes it through a software system that manages, analyses and displays the data in the form of a map, allowing for an alternative level of analysis. GIS provides a set of tools for describing and understanding the spatial organization of population health and health services that can aid the development of health policy and answer key research questions with respect to rehabilitation health services delivery.

Role of post-mapping computed tomography in virtual-assisted lung mapping.

PubMed

Sato, Masaaki; Nagayama, Kazuhiro; Kuwano, Hideki; Nitadori, Jun-Ichi; Anraku, Masaki; Nakajima, Jun

2017-02-01

Background Virtual-assisted lung mapping is a novel bronchoscopic preoperative lung marking technique in which virtual bronchoscopy is used to predict the locations of multiple dye markings. Post-mapping computed tomography is performed to confirm the locations of the actual markings. This study aimed to examine the accuracy of marking locations predicted by virtual bronchoscopy and elucidate the role of post-mapping computed tomography. Methods Automated and manual virtual bronchoscopy was used to predict marking locations. After bronchoscopic dye marking under local anesthesia, computed tomography was performed to confirm the actual marking locations before surgery. Discrepancies between marking locations predicted by the different methods and the actual markings were examined on computed tomography images. Forty-three markings in 11 patients were analyzed. Results The average difference between the predicted and actual marking locations was 30 mm. There was no significant difference between the latest version of the automated virtual bronchoscopy system (30.7 ± 17.2 mm) and manual virtual bronchoscopy (29.8 ± 19.1 mm). The difference was significantly greater in the upper vs. lower lobes (37.1 ± 20.1 vs. 23.0 ± 6.8 mm, for automated virtual bronchoscopy; p < 0.01). Despite this discrepancy, all targeted lesions were successfully resected using 3-dimensional image guidance based on post-mapping computed tomography reflecting the actual marking locations. Conclusions Markings predicted by virtual bronchoscopy were dislocated from the actual markings by an average of 3 cm. However, surgery was accurately performed using post-mapping computed tomography guidance, demonstrating the indispensable role of post-mapping computed tomography in virtual-assisted lung mapping.

Archive of Digital Chirp Subbottom Profile Data Collected During USGS Cruise 14BIM05 Offshore of Breton Island, Louisiana, August 2014

USGS Publications Warehouse

Forde, Arnell S.; Flocks, James G.; Wiese, Dana S.; Fredericks, Jake J.

2016-03-29

The archived trace data are in standard SEG Y rev. 0 format (Barry and others, 1975); the first 3,200 bytes of the card image header are in American Standard Code for Information Interchange (ASCII) format instead of Extended Binary Coded Decimal Interchange Code (EBCDIC) format. The SEG Y files are available on the DVD version of this report or online, downloadable via the USGS Coastal and Marine Geoscience Data System (http://cmgds.marine.usgs.gov). The data are also available for viewing using GeoMapApp (http://www.geomapapp.org) and Virtual Ocean (http://www.virtualocean.org) multi-platform open source software. The Web version of this archive does not contain the SEG Y trace files. To obtain the complete DVD archive, contact USGS Information Services at 1-888-ASK-USGS or infoservices@usgs.gov. The SEG Y files may be downloaded and processed with commercial or public domain software such as Seismic Unix (SU) (Cohen and Stockwell, 2010). See the How To Download SEG Y Data page for download instructions. The printable profiles are provided as Graphics Interchange Format (GIF) images processed and gained using SU software and can be viewed from theProfiles page or by using the links located on the trackline maps; refer to the Software page for links to example SU processing scripts.

Microwave Remote Sensing of the Temperature and Distribution of Sulfur Compounds in the Lower Atmosphere of Venus

NASA Astrophysics Data System (ADS)

Jenkins, Jon M.; Kolodner, Marc A.; Butler, Bryan J.; Suleiman, Shady H.; Steffes, Paul G.

2002-08-01

A multi-wavelength radio frequency observation of Venus was performed on April 5, 1996, with the Very Large Array to investigate potential variations in the vertical and horizontal distribution of temperature and the sulfur compounds sulfur dioxide (SO 2) and sulfuric acid vapor (H 2SO 4(g)) in the atmosphere of the planet. Brightness temperature maps were produced which feature significantly darkened polar regions compared to the brighter low-latitude regions at both observed frequencies. This is the first time such polar features have been seen unambiguously in radio wavelength observations of Venus. The limb-darkening displayed in the maps helps to constrain the vertical profile of H 2SO 4(g), temperature, and to some degree SO 2. The maps were interpreted by applying a retrieval algorithm to produce vertical profiles of temperature and abundance of H 2SO 4(g) given an assumed sub-cloud abundance of SO 2. The results indicate a substantially higher abundance of H 2SO 4(g) at high latitudes (above 45°) than in the low-latitude regions. The retrieved temperature profiles are up to 25 K warmer than the profile obtained by the Pioneer Venus sounder probe at altitudes below 40 km (depending on location and assumed SO 2 abundance). For 150 ppm of SO 2, it is more consistent with the temperature profile obtained by Mariner 5, extrapolated to the surface via a dry adiabat. The profiles obtained for H 2SO 4(g) at high latitudes are consistent with those derived from the Magellan radio occultation experiments, peaking at around 8 ppm at an altitude of 46 km and decaying rapidly away from that altitude. At low latitudes, no significant H 2SO 4(g) is observed, regardless of the assumed SO 2 content. This is well below that measured by Mariner 10 (Lipa and Tyler 1979, Icarus39, 192-208), which peaked at ˜14 ppm near 47 km. Our results favor ≤100 ppm of SO 2 at low latitudes and ≤50 ppm in polar regions. The low-latitude value is statistically consistent with the results of Bézard et al. (1983, Geophs. Res. Lett.20, 1587-1590), who found that a sub-cloud SO 2 abundance of 130±40 ppm best matched their observations in the near-IR. The retrieved temperature profile and higher abundance of H 2SO 4(g) in polar regions are consistent with a strong equatorial-to-polar, cloud-level flow due to a Hadley cell in the atmosphere of Venus.

Evaluation of extemporaneous oral itraconazole suspensions by dissolution profiles mapping.

PubMed

Tong, Henry H Y; Chan, Hokman; Du, Zhen; Zheng, Ying

2010-01-01

The objective of this study was to evaluate by dissolution profiles mapping five extemporaneous oral itraconazole suspensions reported in the literature. Dissolution profiles of the extemporaneous oral itraconazole preparations were mapped and correlated with their reported clinical data therein. Four out of five extemporaneous preparations had either too early or insufficient release of itraconazole during the dissolution study, potentially limiting the in vivo oral bioavailability in patients. Dissolution profiles in the remaining extemporaneous preparation was closely similar to that in commercial itraconazole capsules. Based on the reported clinical data and dissolution results in this study, the extemporaneous preparation proposed in a study by Ong and Fobes seems to be the most reasonable choice for our patients. Dissolution profile evaluation is an important quality-control parameter during the evaluation of extemporaneous preparations by pharmacists.

Infrequent and low expression of cancer-testis antigens located on the X chromosome in colorectal cancer: implications for immunotherapy in South African populations.

PubMed

Dakshinamurthy, Amirtha Ganesh; Ramesar, Rajkumar; Goldberg, Paul; Blackburn, Jonathan M

2008-11-01

Cancer-testis (CT) antigens are a group of tumor antigens that are expressed in the testis and aberrantly in cancerous tissue but not in somatic tissues. The testis is an immune-privileged site because of the presence of a blood-testis barrier; as a result, CT antigens are considered to be essentially tumor specific and are attractive targets for immunotherapy. CT antigens are classified as the CT-X and the non-X CT antigens depending on the chromosomal location to which the genes are mapped. CT-X antigens are typically highly immunogenic and hence the first step towards tailored immunotherapy is to elucidate the expression profile of CT-X antigens in the respective tumors. In this study we investigated the expression profile of 16 CT-X antigen genes in 34 colorectal cancer (CRC) patients using reverse transcription-polymerase chain reaction. We observed that 12 of the 16 CT-X antigen genes studied did not show expression in any of the CRC samples analyzed. The other 4 CT-X antigen genes showed low frequency of expression and exhibited a highly variable expression profile when compared to other populations. Thus, our study forms the first report on the expression profile of CT-X antigen genes among CRC patients in the genetically diverse South African population. The results of our study suggest that genetic and ethnic variations in population might have a role in the expression of the CT-X antigen genes. Thus our results have significant implications for anti-CT antigen-based immunotherapy trials in this population.

AGN Space Telescope and Optical Reverberation Mapping Project. IV. Velocity-Delay Mapping of Broad Emission Lines in NGC 5548

NASA Astrophysics Data System (ADS)

Horne, Keith D.; Agn Storm Team

2015-01-01

Two-dimensional velocity-delay maps of AGN broad emission line regions can be recovered by modelling observations of reverberating emission-line profiles on the assumption that the line profile variations are driven by changes in ionising radiation from a compact source near the black hole. The observable light travel time delay resolves spatial structure on iso-delay paraboloids, while the doppler shift resolves kinematic structure along the observer's line-of-sight. Velocity-delay maps will be presented and briefly discussed for the Lyman alpha, CIV and Hbeta line profiles based on the HST and ground-based spectrophotometric monitoring of NGC 5548 during the 2014 AGN STORM campaign.

Translational profiling of B cells infected with the Epstein-Barr virus reveals 5' leader ribosome recruitment through upstream open reading frames.

PubMed

Bencun, Maja; Klinke, Olaf; Hotz-Wagenblatt, Agnes; Klaus, Severina; Tsai, Ming-Han; Poirey, Remy; Delecluse, Henri-Jacques

2018-04-06

The Epstein-Barr virus (EBV) genome encodes several hundred transcripts. We have used ribosome profiling to characterize viral translation in infected cells and map new translation initiation sites. We show here that EBV transcripts are translated with highly variable efficiency, owing to variable transcription and translation rates, variable ribosome recruitment to the leader region and coverage by monosomes versus polysomes. Some transcripts were hardly translated, others mainly carried monosomes, showed ribosome accumulation in leader regions and most likely represent non-coding RNAs. A similar process was visible for a subset of lytic genes including the key transactivators BZLF1 and BRLF1 in cells infected with weakly replicating EBV strains. This suggests that ribosome trapping, particularly in the leader region, represents a new checkpoint for the repression of lytic replication. We could identify 25 upstream open reading frames (uORFs) located upstream of coding transcripts that displayed 5' leader ribosome trapping, six of which were located in the leader region shared by many latent transcripts. These uORFs repressed viral translation and are likely to play an important role in the regulation of EBV translation.

Frameshift Suppression in SACCHAROMYCES CEREVISIAE VI. Complete Genetic Map of Twenty-Five Suppressor Genes

PubMed Central

Gaber, Richard F.; Mathison, Lorilee; Edelman, Irv; Culbertson, Michael R.

1983-01-01

Five previously unmapped frameshift suppressor genes have been located on the yeast genetic map. In addition, we have further characterized the map positions of two suppressors whose approximate locations were determined in an earlier study. These results represent the completion of genetic mapping studies on all 25 of the known frameshift suppressor genes in yeast.—The approximate location of each suppressor gene was initially determined through the use of a set of mapping strains containing 61 signal markers distributed throughout the yeast genome. Standard meiotic linkage was assayed in crosses between strains carrying the suppressors and the mapping strains. Subsequent to these approximate linkage determinations, each suppressor gene was more precisely located in multi-point crosses. The implications of these mapping results for the genomic distribution of frameshift suppressor genes, which include both glycine and proline tRNA genes, are discussed. PMID:17246112

Kalman/Map filtering-aided fast normalized cross correlation-based Wi-Fi fingerprinting location sensing.

PubMed

Sun, Yongliang; Xu, Yubin; Li, Cheng; Ma, Lin

2013-11-13

A Kalman/map filtering (KMF)-aided fast normalized cross correlation (FNCC)-based Wi-Fi fingerprinting location sensing system is proposed in this paper. Compared with conventional neighbor selection algorithms that calculate localization results with received signal strength (RSS) mean samples, the proposed FNCC algorithm makes use of all the on-line RSS samples and reference point RSS variations to achieve higher fingerprinting accuracy. The FNCC computes efficiently while maintaining the same accuracy as the basic normalized cross correlation. Additionally, a KMF is also proposed to process fingerprinting localization results. It employs a new map matching algorithm to nonlinearize the linear location prediction process of Kalman filtering (KF) that takes advantage of spatial proximities of consecutive localization results. With a calibration model integrated into an indoor map, the map matching algorithm corrects unreasonable prediction locations of the KF according to the building interior structure. Thus, more accurate prediction locations are obtained. Using these locations, the KMF considerably improves fingerprinting algorithm performance. Experimental results demonstrate that the FNCC algorithm with reduced computational complexity outperforms other neighbor selection algorithms and the KMF effectively improves location sensing accuracy by using indoor map information and spatial proximities of consecutive localization results.

Kalman/Map Filtering-Aided Fast Normalized Cross Correlation-Based Wi-Fi Fingerprinting Location Sensing

PubMed Central

Sun, Yongliang; Xu, Yubin; Li, Cheng; Ma, Lin

2013-01-01

A Kalman/map filtering (KMF)-aided fast normalized cross correlation (FNCC)-based Wi-Fi fingerprinting location sensing system is proposed in this paper. Compared with conventional neighbor selection algorithms that calculate localization results with received signal strength (RSS) mean samples, the proposed FNCC algorithm makes use of all the on-line RSS samples and reference point RSS variations to achieve higher fingerprinting accuracy. The FNCC computes efficiently while maintaining the same accuracy as the basic normalized cross correlation. Additionally, a KMF is also proposed to process fingerprinting localization results. It employs a new map matching algorithm to nonlinearize the linear location prediction process of Kalman filtering (KF) that takes advantage of spatial proximities of consecutive localization results. With a calibration model integrated into an indoor map, the map matching algorithm corrects unreasonable prediction locations of the KF according to the building interior structure. Thus, more accurate prediction locations are obtained. Using these locations, the KMF considerably improves fingerprinting algorithm performance. Experimental results demonstrate that the FNCC algorithm with reduced computational complexity outperforms other neighbor selection algorithms and the KMF effectively improves location sensing accuracy by using indoor map information and spatial proximities of consecutive localization results. PMID:24233027

Magnetotelluric and aeromagnetic investigations for assessment of groundwater resources in Parnaiba basin in Piaui State of North-East Brazil

NASA Astrophysics Data System (ADS)

Chandrasekhar, E.; Fontes, Sergio L.; Flexor, Jean M.; Rajaram, Mita; Anand, S. P.

2009-06-01

In an attempt to locate the presence of possible groundwater resource regions in the semi-arid North-East Brazil, an integrated survey including aeromagnetic and magnetotelluric (MT) studies have been undertaken in the Guaribas region and only MT survey in the Caracol region. In the Guaribas region the aeromagnetic data, its analytic signal and Euler solutions reveal several subsurface small-scale faults and intrusives that are conducive to be potential groundwater resource regions. A total of about 22 broad-band magnetotelluric (MT) soundings in the period range of 0.006-300 s along two profiles on the marginal arcs of the intra-cratonic sedimentary Parnaíba basin in North-East Brazil have been made across the regional geological strike, the Senador Pompeu Lineament (SPL). SPL trends N40°E and marks a basement high reflecting an irregularity in the original basin geometry. While one of the MT profiles traverses across the SPL, the other lies only in the aeromagnetically surveyed sedimentary region. Two-dimensional inversion of MT data of both profiles shows that the sedimentary basin is conductive (100-150 Ω m) and shows as a thin graben with an average thickness of about 2-3 km beneath both profiles. The basin is located to be at shallow depths (from surface to about 500 m). Based on the facts that the study region falls on sedimentary region having low-to-very low permeability and also in accordance with the subsurface lithology around the study region, the mapped sedimentary basin largely manifests the zone of potential sedimentary aquifer having moderate resistivity of 50-250 Ω m and is located at relatively shallow depths. The identified aquifer zone is believed to have links with the Parnaiba River flowing at a distance of about 300 km NW from the study region. We discuss interpretation of our results of MT and aeromagnetic data sets in the light of hydrological features of the study region.

Challenges of using electrical resistivity method to locate karst conduits-A field case in the Inner Bluegrass Region, Kentucky

USGS Publications Warehouse

Zhu, J.; Currens, J.C.; Dinger, J.S.

2011-01-01

Conduits serve as major pathways for groundwater flow in karst aquifers. Locating them from the surface, however, is one of the most challenging tasks in karst research. Geophysical methods are often deployed to help locate voids by mapping variations of physical properties of the subsurface. Conduits can cause significant contrasts of some physical properties that can be detected; other subsurface features such as water-bearing fractures often yield similar contrasts, which are difficult to distinguish from the effects of the conduits. This study used electrical resistivity method to search for an unmapped karst conduit that recharges Royal Spring in the Inner Bluegrass karst region, Kentucky, USA. Three types of resistivity techniques (surface 2D survey, quasi-3D survey, and time-lapse survey) were used to map and characterize resistivity anomalies. Some of the major anomalies were selected as drilling targets to verify the existence of the conduits. Drilling near an anomaly identified by an electrical resistivity profile resulted in successful penetration of a major water-filled conduit. The drilling results also suggest that, in this study area, low resistivity anomalies in general are associated with water-bearing features. However, differences in the anomaly signals between the water-filled conduit and other water-bearing features such as water-filled fracture zones were undistinguishable. The electrical resistivity method is useful in conduit detection by providing potential drilling targets. Knowledge of geology and hydrogeology about the site and professional judgment also played important roles in locating the major conduit. ?? 2011 Elsevier B.V.

Depth profile measurement with lenslet images of the plenoptic camera

NASA Astrophysics Data System (ADS)

Yang, Peng; Wang, Zhaomin; Zhang, Wei; Zhao, Hongying; Qu, Weijuan; Zhao, Haimeng; Asundi, Anand; Yan, Lei

2018-03-01

An approach for carrying out depth profile measurement of an object with the plenoptic camera is proposed. A single plenoptic image consists of multiple lenslet images. To begin with, these images are processed directly with a refocusing technique to obtain the depth map, which does not need to align and decode the plenoptic image. Then, a linear depth calibration is applied based on the optical structure of the plenoptic camera for depth profile reconstruction. One significant improvement of the proposed method concerns the resolution of the depth map. Unlike the traditional method, our resolution is not limited by the number of microlenses inside the camera, and the depth map can be globally optimized. We validated the method with experiments on depth map reconstruction, depth calibration, and depth profile measurement, with the results indicating that the proposed approach is both efficient and accurate.

Soil property maps of Africa at 250 m resolution

NASA Astrophysics Data System (ADS)

Kempen, Bas; Hengl, Tomislav; Heuvelink, Gerard B. M.; Leenaars, Johan G. B.; Walsh, Markus G.; MacMillan, Robert A.; Mendes de Jesus, Jorge S.; Shepherd, Keith; Sila, Andrew; Desta, Lulseged T.; Tondoh, Jérôme E.

2015-04-01

Vast areas of arable land in sub-Saharan Africa suffer from low soil fertility and physical soil constraints, and significant amounts of nutrients are lost yearly due to unsustainable soil management practices. At the same time it is expected that agriculture in Africa must intensify to meet the growing demand for food and fiber the next decades. Protection and sustainable management of Africa's soil resources is crucial to achieve this. In this context, comprehensive, accurate and up-to-date soil information is an essential input to any agricultural or environmental management or policy and decision-making model. In Africa, detailed soil information has been fragmented and limited to specific zones of interest for decades. To help bridge the soil information gap in Africa, the Africa Soil Information Service (AfSIS) project was established in 2008. AfSIS builds on recent advances in digital soil mapping, infrared spectroscopy, remote sensing, (geo)statistics, and integrated soil fertility management to improve the way soils are evaluated, mapped, and monitored. Over the period 2008-2014, the AfSIS project has compiled two soil profile data sets (about 28,000 unique locations): the Africa Soil Profiles (legacy) database and the AfSIS Sentinel Site (new soil samples) database -- the two data sets represent the most comprehensive soil sample database of the African continent to date. In addition a large set of high-resolution environmental data layers (covariates) was assembled. The point data were used in the AfSIS project to generate a set of maps of key soil properties for the African continent at 250 m spatial resolution: sand, silt and clay fractions, bulk density, organic carbon, total nitrogen, pH, cation-exchange capacity, exchangeable bases (Ca, K, Mg, Na), exchangeable acidity, and Al content. These properties were mapped for six depth intervals up to 2 m: 0-5 cm, 5-15 cm, 15-30 cm, 30-60 cm, 60-100 cm, and 100-200 cm. Random forests modelling was used to relate the soil profile observations to a set covariates, that included global soil class and property maps, MODIS imagery and a DEM, in a 3D mapping framework. The model residuals were interpolated by 3D kriging, after which the kriging predictions were added to the random forests predictions to obtain the soil property predictions. The model predictions were validated with 5-fold cross-validation. The random forests models explained between 37% (exch. Na) and 85% (Al content) of the variation in the data. Results also show that globally predicted soil classes help improve continental scale mapping of the soil nutrients and are often among the most important predictors. We conclude that the first mapping results look promising. We used an automated modelling framework that enables re-computing the maps as new data becomes arrives, hereby gradually improving the maps. We showed that global maps of soil classes and properties produced with models that were predominantly calibrated on areas with plentiful observations can be used to improve the accuracy of predictions in regions with less plentiful data, such as Africa.

SU-E-T-604: Penumbra Characteristics of a New InCiseâ„¢ Multileaf Collimator of CyberKnife M6â„¢ System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hwang, M; Jang, S; Ozhasoglu, C

2015-06-15

Purpose: The InCise™ Multileaf Collimator (MLC) of CyberKnife M6™ System has been released recently. The purpose of this study was to explore the dosimetric characteristics of the new MLC. In particular, the penumbra characteristics of MLC fields at varying locations are evaluated. Methods: EBT3-based film measurements were performed with varying MLC fields ranging from 7.5 mm to 27.5 mm. Seventeen regions of interests (ROIs) were identified for irradiation. These are regions located at the central area (denoted as reference field), at the left/right edge areas of reference open field, at an intermediate location between central and edge area. Single beammore » treatment plans were designed by using the MultiPlan and was delivered using the Blue Phantom. Gafchromic films were irradiated at 1.5 cm depth in the Blue Phantom and analyzed using the Film Pro software. Variation of maximum dose, penumbra of MLC-defined fields, and symmetry/flatness were calculated as a function of locations of MLC fields. Results: The InCise™ MLC System showed relatively consistent dose distribution and penumbra size with varying locations of MLC fields. The measured maximum dose varied within 5 % at different locations compared to that at the central location and agreed with the calculated data well within 2%. The measured penumbrae were in the range of 2.9 mm and 3.7 mm and were relatively consistent regardless of locations. However, dose profiles in the out-of-field and in-field regions varied with locations and field sizes. Strong variation was seen for all fields located at 55 mm away from the central field. The MLC leakage map showed that the leakage is dependent on position. Conclusion: The size of penumbra and normalized maximum dose for MLC-defined fields were consistent in different regions of MLC. However, dose profiles in the out-field region varied with locations and field sizes.« less

Development of a multiple bulked segregant analysis (MBSA) method used to locate a new stem rust resistance gene (Sr54) in the winter wheat cultivar Norin 40.

PubMed

Ghazvini, Habibollah; Hiebert, Colin W; Thomas, Julian B; Fetch, Thomas

2013-02-01

An important aspect of studying putative new genes in wheat is determining their position on the wheat genetic map. The primary difficulty in mapping genes is determining which chromosome carries the gene of interest. Several approaches have been developed to address this problem, each with advantages and disadvantages. Here we describe a new approach called multiple bulked segregant analysis (MBSA). A set of 423 simple sequence repeat (SSR) markers were selected based on profile simplicity, frequency of polymorphism, and distribution across the wheat genome. SSR primers were preloaded in 384-well PCR plates with each primer occupying 16 wells. In practice, 14 wells are reserved for "mini-bulks" that are equivalent to four gametes (e.g. two F(2) individuals) comprised of individuals from a segregated population that have a known homozygous genotype for the gene of interest. The remaining two wells are reserved for the parents of the population. Each well containing a mini-bulk can have one of three allele compositions for each SSR: only the allele from one parent, only the allele from the other parent, or both alleles. Simulation experiments were performed to determine the pattern of mini-bulk allele composition that would indicate putative linkage between the SSR in question and the gene of interest. As a test case, MBSA was employed to locate an unidentified stem rust resistance (Sr) gene in the winter wheat cultivar Norin 40. A doubled haploid (DH) population (n = 267) was produced from hybrids of the cross LMPG-6S/Norin 40. The DH population segregated for a single gene (χ (1:1) (2) = 0.093, p = 0.76) for resistance to Puccinia graminis f.sp. tritici race LCBN. Four resistant DH lines were included in each of the 14 mini-bulks for screening. The Sr gene was successfully located to the long arm of chromosome 2D using MBSA. Further mapping confirmed the chromosome location and revealed that the Sr gene was located in a linkage block that may represent an alien translocation. The new Sr gene was designated as Sr54.

SpaceTime Environmental Image Information for Scene Understanding

DTIC Science & Technology

2016-04-01

public Internet resources such as Google,65 MapQuest,66 Bing,67 and Yahoo Maps.68 Approved for public release; distribution unlimited. 9 Table 3...azimuth angle 3 Terrain and location: USACE AGC — Satellite/aerial imagery and terrain analysis 4 Terrain and location: Google, MapQuest, Bing, Yahoo ...Maps. [accessed 2015 Dec]. https://www.bing.com/maps/. 68. YAHOO ! Maps. [accessed 2015 Dec]. https://maps.yahoo.com/b/. 69. 557th Weather Wing. US

TU-G-BRB-03: Iterative Optimization of Normalized Transmission Maps for IMRT Using Arbitrary Beam Profiles.

PubMed

Choi, K; Suh, T; Xing, L

2012-06-01

Newly available flattening filter free (FFF) beam increases the dose rate by 3∼6 times at the central axis. In reality, even flattening filtered beam is not perfectly flat. In addition, the beam profiles across different fields may not have the same amplitude. The existing inverse planning formalism based on the total-variation of intensity (or fluence) map cannot consider these properties of beam profiles. The purpose of this work is to develop a novel dose optimization scheme with incorporation of the inherent beam profiles to maximally utilize the efficacy of arbitrary beam profiles while preserving the convexity of the optimization problem. To increase the accuracy of the problem formalism, we decompose the fluence map as an elementwise multiplication of the inherent beam profile and a normalized transmission map (NTM). Instead of attempting to optimize the fluence maps directly, we optimize the NTMs and beam profiles separately. A least-squares problem constrained by total-variation of NTMs is developed to derive the optimal fluence maps that balances the dose conformality and FFF beam delivery efficiency. With the resultant NTMs, we find beam profiles to renormalized NTMs. The proposed method iteratively optimizes and renormalizes NTMs in a closed loop manner. The advantage of the proposed method is demonstrated by using a head-neck case with flat beam profiles and a prostate case with non-flat beam profiles. The obtained NTMs achieve more conformal dose distribution while preserving piecewise constancy compared to the existing solution. The proposed formalism has two major advantages over the conventional inverse planning schemes: (1) it provides a unified framework for inverse planning with beams of arbitrary fluence profiles, including treatment with beams of mixed fluence profiles; (2) the use of total-variation constraints on NTMs allows us to optimally balance the dose confromality and deliverability for a given beam configuration. This project was supported in part by grants from the National Science Foundation (0854492), National Cancer Institute (1R01 CA104205), and Leading Foreign Research Institute Recruitment Program by the Korean Ministry of Education, Science and Technology (K20901000001-09E0100-00110). To the authors' best knowledgement, there is no conflict interest. © 2012 American Association of Physicists in Medicine.

SHARAKU: an algorithm for aligning and clustering read mapping profiles of deep sequencing in non-coding RNA processing.

PubMed

Tsuchiya, Mariko; Amano, Kojiro; Abe, Masaya; Seki, Misato; Hase, Sumitaka; Sato, Kengo; Sakakibara, Yasubumi

2016-06-15

Deep sequencing of the transcripts of regulatory non-coding RNA generates footprints of post-transcriptional processes. After obtaining sequence reads, the short reads are mapped to a reference genome, and specific mapping patterns can be detected called read mapping profiles, which are distinct from random non-functional degradation patterns. These patterns reflect the maturation processes that lead to the production of shorter RNA sequences. Recent next-generation sequencing studies have revealed not only the typical maturation process of miRNAs but also the various processing mechanisms of small RNAs derived from tRNAs and snoRNAs. We developed an algorithm termed SHARAKU to align two read mapping profiles of next-generation sequencing outputs for non-coding RNAs. In contrast with previous work, SHARAKU incorporates the primary and secondary sequence structures into an alignment of read mapping profiles to allow for the detection of common processing patterns. Using a benchmark simulated dataset, SHARAKU exhibited superior performance to previous methods for correctly clustering the read mapping profiles with respect to 5'-end processing and 3'-end processing from degradation patterns and in detecting similar processing patterns in deriving the shorter RNAs. Further, using experimental data of small RNA sequencing for the common marmoset brain, SHARAKU succeeded in identifying the significant clusters of read mapping profiles for similar processing patterns of small derived RNA families expressed in the brain. The source code of our program SHARAKU is available at http://www.dna.bio.keio.ac.jp/sharaku/, and the simulated dataset used in this work is available at the same link. Accession code: The sequence data from the whole RNA transcripts in the hippocampus of the left brain used in this work is available from the DNA DataBank of Japan (DDBJ) Sequence Read Archive (DRA) under the accession number DRA004502. yasu@bio.keio.ac.jp Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press.

Grizzly Valley fault system, Sierra Valley, CA

USGS Publications Warehouse

Gold, Ryan; Stephenson, William; Odum, Jack; Briggs, Rich; Crone, Anthony; Angster, Steve

2012-01-01

The Grizzly Valley fault system (GVFS) strikes northwestward across Sierra Valley, California and is part of a network of active, dextral strike-slip faults in the northern Walker Lane (Figure 1). To investigate Quaternary motion across the GVFS, we analyzed high-resolution (0.25 m) airborne LiDAR data (Figure 2) in combination with six, high-resolution, P-wave, seismic-reflection profiles [Gold and others, 2012]. The 0.5- to 2.0-km-long seismic-reflection profiles were sited orthogonal to suspected tectonic lineaments identified from previous mapping and our analysis of airborne LiDAR data. To image the upper 400–700 m of subsurface stratigraphy of Sierra Valley (Figure 3), we used a 230-kg accelerated weight drop source. Geophone spacing ranged from 2 to 5 m and shots were co-located with the geophones. The profiles reveal a highly reflective, deformed basal marker that we interpret to be the top of Tertiary volcanic rocks, overlain by a 120- to 300-m-thick suite of subhorizontal reflectors we interpret as Plio-Pleistocene lacustrine deposits. Three profiles image the principle active trace of the GVFS, which is a steeply dipping fault zone that offsets the volcanic rocks and the basin fill (Figures 4 & 5).

Marine habitat mapping of the Milford Haven Waterway, Wales, UK: Comparison of facies mapping and EUNIS classification for monitoring sediment habitats in an industrialized estuary

NASA Astrophysics Data System (ADS)

Carey, Drew A.; Hayn, Melanie; Germano, Joseph D.; Little, David I.; Bullimore, Blaise

2015-06-01

A detailed map and dataset of sedimentary habitats of the Milford Haven Waterway (MHW) was compiled for the Milford Haven Waterway Environmental Surveillance Group (MHWESG) from seafloor images collected in May, 2012 using sediment-profile and plan-view imaging (SPI/PV) survey techniques. This is the most comprehensive synoptic assessment of sediment distribution and benthic habitat composition available for the MHW, with 559 stations covering over 40 km2 of subtidal habitats. In the context of the MHW, an interpretative framework was developed that classified each station within a 'facies' that included information on the location within the waterway and inferred sedimentary and biological processes. The facies approach provides critical information on landscape-scale habitats including relative location and inferred sediment transport processes and can be used to direct future monitoring activities within the MHW and to predict areas of greatest potential risk from contaminant transport. Intertidal sediment 'facies' maps have been compiled in the past for MHW; this approach was expanded to map the subtidal portions of the waterway. Because sediment facies can be projected over larger areas than individual samples (due to assumptions based on physiography, or landforms) they represent an observational model of the distribution of sediments in an estuary. This model can be tested over time and space through comparison with additional past or future sample results. This approach provides a means to evaluate stability or change in the physical and biological conditions of the estuarine system. Initial comparison with past results for intertidal facies mapping and grain size analysis from grab samples showed remarkable stability over time for the MHW. The results of the SPI/PV mapping effort were cross-walked to the European Nature Information System (EUNIS) classification to provide a comparison of locally derived habitat mapping with European-standard habitat mapping. Cross-walk was conducted by assigning each facies (or group of facies) to a EUNIS habitat (Levels 3 or 5) and compiling maps comparing facies distribution with EUNIS habitat distribution. The facies approach provides critical information on landscape-scale habitats including relative location and inferred sediment transport processes. The SPI/PV approach cannot consistently identify key species contained within the EUNIS Level 5 Habitats. For regional planning and monitoring efforts, a combination of EUNIS classification and facies description provides the greatest flexibility for management of dynamic soft-bottom habitats in coastal estuaries. The combined approach can be used to generate and test hypotheses of linkages between biological characteristics (EUNIS) and physical characteristics (facies). This approach is practical if a robust cross-walk methodology is developed to utilize both classification approaches. SPI/PV technology can be an effective rapid ground truth method for refining marine habitat maps based on predictive models.

Audiovisual communication of object-names improves the spatial accuracy of recalled object-locations in topographic maps.

PubMed

Lammert-Siepmann, Nils; Bestgen, Anne-Kathrin; Edler, Dennis; Kuchinke, Lars; Dickmann, Frank

2017-01-01

Knowing the correct location of a specific object learned from a (topographic) map is fundamental for orientation and navigation tasks. Spatial reference systems, such as coordinates or cardinal directions, are helpful tools for any geometric localization of positions that aims to be as exact as possible. Considering modern visualization techniques of multimedia cartography, map elements transferred through the auditory channel can be added easily. Audiovisual approaches have been discussed in the cartographic community for many years. However, the effectiveness of audiovisual map elements for map use has hardly been explored so far. Within an interdisciplinary (cartography-cognitive psychology) research project, it is examined whether map users remember object-locations better if they do not just read the corresponding place names, but also listen to them as voice recordings. This approach is based on the idea that learning object-identities influences learning object-locations, which is crucial for map-reading tasks. The results of an empirical study show that the additional auditory communication of object names not only improves memory for the names (object-identities), but also for the spatial accuracy of their corresponding object-locations. The audiovisual communication of semantic attribute information of a spatial object seems to improve the binding of object-identity and object-location, which enhances the spatial accuracy of object-location memory.

Audiovisual communication of object-names improves the spatial accuracy of recalled object-locations in topographic maps

PubMed Central

Bestgen, Anne-Kathrin; Edler, Dennis; Kuchinke, Lars; Dickmann, Frank

2017-01-01

Knowing the correct location of a specific object learned from a (topographic) map is fundamental for orientation and navigation tasks. Spatial reference systems, such as coordinates or cardinal directions, are helpful tools for any geometric localization of positions that aims to be as exact as possible. Considering modern visualization techniques of multimedia cartography, map elements transferred through the auditory channel can be added easily. Audiovisual approaches have been discussed in the cartographic community for many years. However, the effectiveness of audiovisual map elements for map use has hardly been explored so far. Within an interdisciplinary (cartography-cognitive psychology) research project, it is examined whether map users remember object-locations better if they do not just read the corresponding place names, but also listen to them as voice recordings. This approach is based on the idea that learning object-identities influences learning object-locations, which is crucial for map-reading tasks. The results of an empirical study show that the additional auditory communication of object names not only improves memory for the names (object-identities), but also for the spatial accuracy of their corresponding object-locations. The audiovisual communication of semantic attribute information of a spatial object seems to improve the binding of object-identity and object-location, which enhances the spatial accuracy of object-location memory. PMID:29059237

New Stratospheric Dust Belt Due to the Chelyabinsk Bolide

NASA Technical Reports Server (NTRS)

Gorkavyi, Nick; Rault, D. F.; Newman, P. A.; da Silva, A. M.; Dudorov, A. E.

2013-01-01

The Ozone Mapping Profiler Suite (OMPS) Limb Profiler (LP) on the recently launched NASA/NOAA NPP/ Suomi satellite detected aerosol excess in the midstratosphere (25-45 km altitude) between 50degN and 70degN latitudes. OMPS/LP observations trace this aerosol plume to the meteor that struck near Chelyabinsk, Russia on 15 February 2013. This new dust layer, located above the Junge aerosol layer, has persisted over at least a 3 month period. Material collected on the ground following the bolide explosion showed that the meteor was mostly composed of olivine and pyroxenes. Simulations using Lagrangian and Eulerian atmospheric models trace the plume back to Chelyabinsk and confirm that the plume altitude was at altitudes between 25 and 45 km. The models also confirm the plume circumpolar longitudinal spreading observed by OMPS/LP, with propagation speeds up to 85 m/s.

Endogenous peptide profile for elucidating biosynthetic processing of the ghrelin precursor.

PubMed

Tsuchiya, Takashi; Iwakura, Hiroshi; Minamino, Naoto; Kangawa, Kenji; Sasaki, Kazuki

2017-09-02

Ghrelin is an orexigenic peptide primarily produced by gastric endocrine cells. The biosynthetic cleavage site of ghrelin has been well documented, but how its downstream region undergoes proteolytic processing remains poorly explored. Here, we provide the first snapshot of endogenous peptides from the ghrelin precursor by profiling the secretopeptidome of cultured mouse ghrelin-producing cells during exocytosis. Mapping of MS/MS sequenced peptides to the precursor highlighted three atypical monobasic processing sites, including the established C-terminus of ghrelin and the N-terminal cleavage site for obestatin, a putative 23-amino-acid C-terminally amidated peptide. However, we found that mouse obestatin does not occur in the form originally reported, but that a different amidation site is used to generate a shorter peptide. These data can be extended to study and characterize the precursor-derived peptides located downstream of ghrelin in different biological contexts. Copyright © 2017 Elsevier Inc. All rights reserved.

Identifying the 630 nm auroral arc emission height: A comparison of the triangulation, FAC profile, and electron density methods

NASA Astrophysics Data System (ADS)

Megan Gillies, D.; Knudsen, D.; Donovan, E.; Jackel, B.; Gillies, R.; Spanswick, E.

2017-08-01

We present a comprehensive survey of 630 nm (red-line) emission discrete auroral arcs using the newly deployed Redline Emission Geospace Observatory. In this study we discuss the need for observations of 630 nm aurora and issues with the large-altitude range of the red-line aurora. We compare field-aligned currents (FACs) measured by the Swarm constellation of satellites with the location of 10 red-line (630 nm) auroral arcs observed by all-sky imagers (ASIs) and find that a characteristic emission height of 200 km applied to the ASI maps gives optimal agreement between the two observations. We also compare the new FAC method against the traditional triangulation method using pairs of all-sky imagers (ASIs), and against electron density profiles obtained from the Resolute Bay Incoherent Scatter Radar-Canadian radar, both of which are consistent with a characteristic emission height of 200 km.

Grids in topographic maps reduce distortions in the recall of learned object locations.

PubMed

Edler, Dennis; Bestgen, Anne-Kathrin; Kuchinke, Lars; Dickmann, Frank

2014-01-01

To date, it has been shown that cognitive map representations based on cartographic visualisations are systematically distorted. The grid is a traditional element of map graphics that has rarely been considered in research on perception-based spatial distortions. Grids do not only support the map reader in finding coordinates or locations of objects, they also provide a systematic structure for clustering visual map information ("spatial chunks"). The aim of this study was to examine whether different cartographic kinds of grids reduce spatial distortions and improve recall memory for object locations. Recall performance was measured as both the percentage of correctly recalled objects (hit rate) and the mean distance errors of correctly recalled objects (spatial accuracy). Different kinds of grids (continuous lines, dashed lines, crosses) were applied to topographic maps. These maps were also varied in their type of characteristic areas (LANDSCAPE) and different information layer compositions (DENSITY) to examine the effects of map complexity. The study involving 144 participants shows that all experimental cartographic factors (GRID, LANDSCAPE, DENSITY) improve recall performance and spatial accuracy of learned object locations. Overlaying a topographic map with a grid significantly reduces the mean distance errors of correctly recalled map objects. The paper includes a discussion of a square grid's usefulness concerning object location memory, independent of whether the grid is clearly visible (continuous or dashed lines) or only indicated by crosses.

Identification of shallow geothermal anomalies in the Timanfaya National Park (Lanzarote, Canary Islands) through combined geophysical prospecting techniques

NASA Astrophysics Data System (ADS)

Gómez-Ortiz, David; Blanco-Montenegro, Isabel; Martín-Crespo, Tomás; Arnoso, José; Solla, Mercedes; Montesinos, Fuensanta G.; Vélez, Emilio; Calvo-Rathert, Manuel; Sánchez, Nieves; Lorenzo, Henrique; Soler, Vicente

2017-04-01

The Timanfaya National Park is a volcanic area in the southwest of Lanzarote Island (Canary Archipelago, Spain) resulting from the 1730-1736 eruption period. Several active geothermal anomalies have been identified from 1970's. Their location is important to prevent hazards in this restricted touristic area of the park. Presently, only some regional geophysical studies based on gravity, magnetic and seismic data have been undertaken to model the crustal structure of Lanzarote Island. This work presents a new study about the geothermal anomalies in the Timanfaya National Park by the analysis and joint interpretation of electrical resistivity tomography (ERT), magnetic anomalies and electromagnetic induction data (EMI). All analyzed data have been obtained over areas which had not been surveyed before. The studied geothermal field is located at the Islote de Hilario visitor's centre. One 50m-long GPR profile was carried out in May 2012 along the location of a known geothermal anomaly developed over pyroclastic deposits. The two main characteristics are: a) no continuous subhorizontal reflections are displayed up to 12 m depth and, b) the intensity of the reflections varies laterally in good agreement with the location of the geothermal anomalies (the higher the ground temperature, the greater the intensity of the GPR signal). Thus, an outline of the subsurface area with higher temperatures can be observed, indicating that the heat source is deeper at the beginning of the profile and extends laterally and progressively shallower towards the end. Temporal variation of the shallow temperature distribution was also investigated by repeating the same GPR profile in April 2015. Although both profiles look quite similar, subtle variations of the GPR signal intensity suggest a certain temporal variation of the ground temperature. In November 2012 a land magnetic survey was carried out in Timanfaya. In the Islote de Hilario area, total field magnetic data were acquired with an Overhauser magnetometer following a 75m-long profile which coincides in the first 50 m with the GPR profile. Three additional profiles (two of them parallel and one orthogonal to the first one) completed the survey, allowing the interpolation of the data into a regular grid. The resulting reduced-to-the-pole anomaly map displays some magnetic lows which could be related with high temperatures at shallow depths causing the loss of magnetic properties within the subsurface volcanic rocks. Forward modelling has been carried out to characterize the magnetic sources and to analyze the correlations with GPR data. These models have been constrained with NRM and susceptibility data measured in the laboratory for samples from the Timanfaya lava flows. Preliminary results of EMI data show high resistivity areas in good agreement with the location of the shallow geothermal anomalies, the magnetic lows and the high GPR signal intensity. The comparison of the results obtained from the different techniques reveals that the joint interpretation of ERT, magnetic anomalies and EMI methods provides reliable models useful for the location of shallow geothermal anomalies. These non-destructive geophysical techniques are of crucial importance in areas of special protection such as National Parks.

Gravity field over the Sea of Galilee: Evidence for a composite basin along a transform fault

USGS Publications Warehouse

Ben-Avraham, Z.; ten Brink, Uri S.; Bell, R.; Reznikov, M.

1996-01-01

The Sea of Galilee (Lake Kinneret) is located at the northern portion of the Kinneret-Bet Shean basin, in the northern Dead Sea transform. Three hundred kilometers of continuous marine gravity data were collected in the lake and integrated with land gravity data to a distance of more than 20 km around the lake. Analyses of the gravity data resulted in a free-air anomaly map, a variable density Bouguer anomaly map, and a horizontal first derivative map of the Bouguer anomaly. These maps, together with gravity models of profiles across the lake and the area south of it, were used to infer the geometry of the basins in this region and the main faults of the transform system. The Sea of Galilee can be divided into two units. The southern half is a pull-apart that extends to the Kinarot Valley, south of the lake, whereas the northern half was formed by rotational opening and transverse normal faults. The deepest part of the basinal area is located well south of the deepest bathymetric depression. This implies that the northeastern part of the lake, where the bathymetry is the deepest, is a young feature that is actively subsiding now. The pull-apart basin is almost symmetrical in the southern part of the lake and in the Kinarot Valley south of the lake. This suggests that the basin here is bounded by strike-slip faults on both sides. The eastern boundary fault extends to the northern part of the lake, while the western fault does not cross the northern part. The main factor controlling the structural complexity of this area is the interaction of the Dead Sea transform with a subperpendicular fault system and rotated blocks.

Flood-inundation maps for the Patoka River in and near Jasper, southwestern Indiana

USGS Publications Warehouse

Fowler, Kathleen K.

2018-01-23

Digital flood-inundation maps for a 9.5-mile reach of the Patoka River in and near the city of Jasper, southwestern Indiana (Ind.), from the streamgage near County Road North 175 East, downstream to State Road 162, were created by the U.S. Geological Survey (USGS) in cooperation with the Indiana Department of Transportation. The flood-inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science web site at https://water.usgs.gov/osw/flood_inundation/, depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) at the USGS streamgage Patoka River at Jasper, Ind. (station number 03375500). The Patoka streamgage is located at the upstream end of the 9.5-mile river reach. Near-real-time stages at this streamgage may be obtained from the USGS National Water Information System at https://waterdata.usgs.gov/ or the National Weather Service Advanced Hydrologic Prediction Service at http://water.weather.gov/ahps/, although flood forecasts and stages for action and minor, moderate, and major flood stages are not currently (2017) available at this site (JPRI3).Flood profiles were computed for the stream reach by means of a one-dimensional step-backwater model. The hydraulic model was calibrated by using the most current stage-discharge relation at the Patoka River at Jasper, Ind., streamgage and the documented high-water marks from the flood of April 30, 2017. The calibrated hydraulic model was then used to compute five water-surface profiles for flood stages referenced to the streamgage datum ranging from 15 feet (ft), or near bankfull, to 19 ft. The simulated water-surface profiles were then combined with a geographic information system digital elevation model (derived from light detection and ranging [lidar] data having a 0.98 ft vertical accuracy and 4.9 ft horizontal resolution) to delineate the area flooded at each water level.The availability of these flood-inundation maps, along with real-time stage from the USGS streamgage at the Patoka River at Jasper, Ind., will provide emergency management personnel and residents with information that is critical for flood response activities such as evacuations and road closures as well as for postflood recovery efforts.

Alternative Fuels Data Center: Maps and Data

Science.gov Websites

Biofuelsatlas BioFuels Atlas is an interactive map for comparing biomass feedstocks and biofuels by location . This tool helps users select from and apply biomass data layers to a map, as well as query and download State Biodiesel-stations View Map Graph E85-stations-map E85 Fueling Station Locations by State E85

Proteomics and metabolomics analyses reveal the cucurbit sieve tube system as a complex metabolic space.

PubMed

Hu, Chaoyang; Ham, Byung-Kook; El-Shabrawi, Hattem M; Alexander, Danny; Zhang, Dabing; Ryals, John; Lucas, William J

2016-09-01

The plant vascular system, and specifically the phloem, plays a pivotal role in allocation of fixed carbon to developing sink organs. Although the processes involved in loading and unloading of sugars and amino acids are well characterized, little information is available regarding the nature of other metabolites in the sieve tube system (STS) at specific sites along the pathway. Here, we elucidate spatial features of metabolite composition mapped with phloem enzymes along the cucurbit STS. Phloem sap (PS) was collected from the loading (source), unloading (apical sink region) and shoot-root junction regions of cucumber, watermelon and pumpkin. Our PS analyses revealed significant differences in the metabolic and proteomic profiles both along the source-sink pathway and between the STSs of these three cucurbits. In addition, metabolite profiles established for PS and vascular tissue indicated the presence of distinct compositions, consistent with the operation of the STS as a unique symplasmic domain. In this regard, at various locations along the STS we could map metabolites and their related enzymes to specific metabolic pathways. These findings are discussed with regard to the function of the STS as a unique and highly complex metabolic space within the plant vascular system. © 2016 The Authors The Plant Journal © 2016 John Wiley & Sons Ltd.

Flood boundaries and water-surface profile for the computed 100-year flood, Swift Creek at Afton, Wyoming, 1986

USGS Publications Warehouse

Rankl, James G.; Wallace, Joe C.

1989-01-01

Flood flows on Swift Creek near Afton, Wyoming, were analyzed. Peak discharge with an average recurrence interval of 100 years was computed and used to determine the flood boundaries and water surface profile in the study reach. The study was done in cooperation with Lincoln County and the Town of Afton to determine the extent of flooding in the Town of Afton from a 100-year flood on Swift Creek. The reach of Swift Creek considered in the analysis extends upstream from the culvert at Allred County Road No. 12-135 to the US Geological Survey streamflow-gaging station located in the Bridger National Forest , a distance of 3.2 miles. Boundaries of the 100-year flood are delineated on a map using the computed elevation of the flood at each cross section, survey data, and a 1983 aerial photograph. The computed water surface elevation for the 100-year flood was plotted at each cross section, then the lateral extent of the flood was transferred to the flood map. Boundaries between cross sections were sketched using information taken from the aerial photograph. Areas that are inundated, but not part of the active flow, are designated on the cross sections. (Lantz-PTT)

Antibiotic susceptibility profiling and virulence potential of Campylobacter jejuni isolates from different sources in Pakistan.

PubMed

Siddiqui, Fariha Masood; Akram, Muhammad; Noureen, Nighat; Noreen, Zobia; Bokhari, Habib

2015-03-01

To determine antibiotic resistance patterns and virulence potential of Campylobacter jejuni (C. jejuni) isolates from clinical human diarrheal infections, cattle and healthy broilers. Antibiotic sensitivity patterns of C. jejuni isolates were determined by Kirby Bauer Disc Diffusion assay. These isolates were then subjected to virulence profiling for the detection of mapA (membrane-associated protein), cadF (fibronectin binding protein), wlaN (beta-l,3-galactosyltransferase) and neuAB (sialic acid biosynthesis gene). Further C. jejuni isolates were grouped by random amplification of polymorphic DNA (RAPD) profiling. A total of 436 samples from poultry (n=88), cattle (n=216) and humans (n=132) from different locations were collected. Results revealed percentage of C. jejuni isolates were 35.2% (31/88), 25.0% (54/216) and 11.3% (15/132) among poultry, cattle and clinical human samples respectively. Antibiotic susceptibility results showed that similar resistance patterns to cephalothin was ie. 87.0%, 87.1% and 89%among humans, poultry and cattle respectively, followed by sulfamethoxazole+trimethoprim 40.0%, 38.7% and 31.0% in humans, poultry and cattle and Ampicillin 40%, 32% and 20% in humans, poultry and cattle respectively. Beta-lactamase activity was detected in 40.00% humans, 20.37% cattle and 32.25% in poultry C. jejuni isolates. CadF and mapA were present in all poultry, cattle and human C. jejuni isolates, wlaN was not detected in any isolate and neuAB was found in 9/31 (36%) poultry isolates. RAPD profiling results suggested high diversity of C. jejuni isolates. Detection of multidrug resistant C. jejuni strains from poultry and cattle is alarming as they can be potential hazard to humans. Moreover, predominant association of virulence factors, cadF and mapA (100% each) in C. jejuni isolates from all sources and neuAB (36%) with poultry isolates suggest the potential source of transmission of diverse types of C. jejuni to humans. Copyright © 2015 Hainan Medical College. Production and hosting by Elsevier B.V. All rights reserved.

Analyzing existing conventional soil information sources to be incorporated in thematic Spatial Data Infrastructures

NASA Astrophysics Data System (ADS)

Pascual-Aguilar, J. A.; Rubio, J. L.; Domínguez, J.; Andreu, V.

2012-04-01

New information technologies give the possibility of widespread dissemination of spatial information to different geographical scales from continental to local by means of Spatial Data Infrastructures. Also administrative awareness on the need for open access information services has allowed the citizens access to this spatial information through development of legal documents, such as the INSPIRE Directive of the European Union, adapted by national laws as in the case of Spain. The translation of the general criteria of generic Spatial Data Infrastructures (SDI) to thematic ones is a crucial point for the progress of these instruments as large tool for the dissemination of information. In such case, it must be added to the intrinsic criteria of digital information, such as the harmonization information and the disclosure of metadata, the own environmental information characteristics and the techniques employed in obtaining it. In the case of inventories and mapping of soils, existing information obtained by traditional means, prior to the digital technologies, is considered to be a source of valid information, as well as unique, for the development of thematic SDI. In this work, an evaluation of existing and accessible information that constitutes the basis for building a thematic SDI of soils in Spain is undertaken. This information framework has common features to other European Union states. From a set of more than 1,500 publications corresponding to the national territory of Spain, the study was carried out in those documents (94) found for five autonomous regions of northern Iberian Peninsula (Asturias, Cantabria, Basque Country, Navarra and La Rioja). The analysis was performed taking into account the criteria of soil mapping and inventories. The results obtained show a wide variation in almost all the criteria: geographic representation (projections, scales) and geo-referencing the location of the profiles, map location of profiles integrated with edaphic units, description and taxonomic classification systems of soils (FAO, Soil taxonomy, etc.), amount and type of soil analysis parameters and dates of the inventories. In conclusion, the construction of thematic SDI on soil should take into account, prior to the integration of all maps and inventories, a series of processes of harmonization that allows spatial continuity between existing information and also temporal identification of the inventories and maps. This should require the development of at least two types of integration tools: (1) enabling spatial continuity without contradictions between maps made at different times and with different criteria and (2) the development of information systems data (metadata) to highlight the characteristics of information and connection possibilities with other sources that comprise the Spatial Data Infrastructure. Acknowledgements This research has financed by the European Union within the framework of the GS Soil project (eContentplus Programme ECP-2008-GEO-318004).

Aerosol Extinction Profile Mapping with Lognormal Distribution Based on MPL Data

NASA Astrophysics Data System (ADS)

Lin, T. H.; Lee, T. T.; Chang, K. E.; Lien, W. H.; Liu, G. R.; Liu, C. Y.

2017-12-01

This study intends to challenge the profile mapping of aerosol vertical distribution by mathematical function. With the similarity in distribution pattern, lognormal distribution is examined for mapping the aerosol extinction profile based on MPL (Micro Pulse LiDAR) in situ measurements. The variables of lognormal distribution are log mean (μ) and log standard deviation (σ), which will be correlated with the parameters of aerosol optical depht (AOD) and planetary boundary layer height (PBLH) associated with the altitude of extinction peak (Mode) defined in this study. On the base of 10 years MPL data with single peak, the mapping results showed that the mean error of Mode and σ retrievals are 16.1% and 25.3%, respectively. The mean error of σ retrieval can be reduced to 16.5% under the cases of larger distance between PBLH and Mode. The proposed method is further applied to MODIS AOD product in mapping extinction profile for the retrieval of PM2.5 in terms of satellite observations. The results indicated well agreement between retrievals and ground measurements when aerosols under 525 meters are well-mixed. The feasibility of proposed method to satellite remote sensing is also suggested by the case study. Keyword: Aerosol extinction profile, Lognormal distribution, MPL, Planetary boundary layer height (PBLH), Aerosol optical depth (AOD), Mode

Location and Venue | The Metastatic Niche: Models, Mechanisms and Targeting Targets into Therapeutics

Cancer.gov

Location and Venue **EVENT CHANGE OF LOCATION:  **Building 10 (Clinical Center) - Masur Auditorium** Helpful links to locate the Masur Auditorium on the NIH campus:  https://www.ors.od.nih.gov/maps/Pages/NIH-Visitor-Map.aspx

"Clinical brain profiling": a neuroscientific diagnostic approach for mental disorders.

PubMed

Peled, Abraham; Geva, Amir B

2014-10-01

Clinical brain profiling is an attempt to map a descriptive nosology in psychiatry to underlying constructs in neurobiology and brain dynamics. This paper briefly reviews the motivation behind clinical brain profiling (CBP) and presents some provisional validation using clinical assessments and meta-analyses of neuroscientific publications. The paper has four sections. In the first, we review the nature and motivation for clinical brain profiling. This involves a description of the key aspects of functional anatomy that can lead to psychopathology. These features constitute the dimensions or categories for a profile of brain disorders based upon pathophysiology. The second section describes a mapping or translation matrix that maps from symptoms and signs, of a descriptive sort, to the CBP dimensions that provide a more mechanistic explanation. We will describe how this mapping engenders archetypal diagnoses, referring readers to tables and figures. The third section addresses the construct validity of clinical brain profiling by establishing correlations between profiles based on clinical ratings of symptoms and signs under classical diagnostic categories with the corresponding profiles generated automatically using archetypal diagnoses. We then provide further validation by performing a cluster analysis on the symptoms and signs and showing how they correspond to the equivalent brain profiles based upon clinical and automatic diagnosis. In the fourth section, we address the construct validity of clinical brain profiling by looking for associations between pathophysiological mechanisms (such as connectivity and plasticity) and nosological diagnoses (such as schizophrenia and depression). Based upon the mechanistic perspective offered in the first section, we test some particular hypotheses about double dissociations using a meta-analysis of PubMed searches. The final section concludes with perspectives for the future and outstanding validation issues for clinical brain profiling. Copyright © 2014 Elsevier Ltd. All rights reserved.

A Multiple Resource Inventory of Delaware Using an Airborne Profiling Laser

NASA Technical Reports Server (NTRS)

Nelson, Ross; Short, Austin; Valenti, Michael A.; Keller, Cherry; Smith, David E. (Technical Monitor)

2002-01-01

An airborne profiling laser is used to monitor multiple resources related to landscape structure, both natural and man-made, across regions encompassing hundreds of thousands of hectares. A small, lightweight, inexpensive airborne profiling laser is used to inventory Delaware forests, to estimate impervious surface area statewide, and to locate potentially Suitable Delmarva Fox Squirrel (Scrotum niger cinereus) habitat. Merchantable volume estimates are within 14% of US Forest Service estimates at the county level and within 4% statewide. Total above-ground dry biomass estimates are within 19% of USES estimates at the county level and within 16% statewide. Mature forest stands suitable for reintroduction of the Delmarva Fox Squirrel, an endangered species historically endemic to the eastern shores of Delaware, Maryland, and Virginia, are identified and mapped along the laser transacts. Intersection lengths with various types of impervious surface (roofs, concrete/asphalt) and open water are tallied to estimate percent and areal coverage statewide, by stratum and county. Laser estimates of open water are within 7% of photointerpreted GIS estimates at the county level and within 3% of the GIS at the state level.

Satellite-map position estimation for the Mars rover

NASA Technical Reports Server (NTRS)

Hayashi, Akira; Dean, Thomas

1989-01-01

A method for locating the Mars rover using an elevation map generated from satellite data is described. In exploring its environment, the rover is assumed to generate a local rover-centered elevation map that can be used to extract information about the relative position and orientation of landmarks corresponding to local maxima. These landmarks are integrated into a stochastic map which is then matched with the satellite map to obtain an estimate of the robot's current location. The landmarks are not explicitly represented in the satellite map. The results of the matching algorithm correspond to a probabilistic assessment of whether or not the robot is located within a given region of the satellite map. By assigning a probabilistic interpretation to the information stored in the satellite map, researchers are able to provide a precise characterization of the results computed by the matching algorithm.

Spatial correlation of shear-wave velocity in the San Francisco Bay Area sediments

USGS Publications Warehouse

Thompson, E.M.; Baise, L.G.; Kayen, R.E.

2007-01-01

Ground motions recorded within sedimentary basins are variable over short distances. One important cause of the variability is that local soil properties are variable at all scales. Regional hazard maps developed for predicting site effects are generally derived from maps of surficial geology; however, recent studies have shown that mapped geologic units do not correlate well with the average shear-wave velocity of the upper 30 m, Vs(30). We model the horizontal variability of near-surface soil shear-wave velocity in the San Francisco Bay Area to estimate values in unsampled locations in order to account for site effects in a continuous manner. Previous geostatistical studies of soil properties have shown horizontal correlations at the scale of meters to tens of meters while the vertical correlations are on the order of centimeters. In this paper we analyze shear-wave velocity data over regional distances and find that surface shear-wave velocity is correlated at horizontal distances up to 4 km based on data from seismic cone penetration tests and the spectral analysis of surface waves. We propose a method to map site effects by using geostatistical methods based on the shear-wave velocity correlation structure within a sedimentary basin. If used in conjunction with densely spaced shear-wave velocity profiles in regions of high seismic risk, geostatistical methods can produce reliable continuous maps of site effects. ?? 2006 Elsevier Ltd. All rights reserved.

Data Imputation in Epistatic MAPs by Network-Guided Matrix Completion

PubMed Central

Žitnik, Marinka; Zupan, Blaž

2015-01-01

Abstract Epistatic miniarray profile (E-MAP) is a popular large-scale genetic interaction discovery platform. E-MAPs benefit from quantitative output, which makes it possible to detect subtle interactions with greater precision. However, due to the limits of biotechnology, E-MAP studies fail to measure genetic interactions for up to 40% of gene pairs in an assay. Missing measurements can be recovered by computational techniques for data imputation, in this way completing the interaction profiles and enabling downstream analysis algorithms that could otherwise be sensitive to missing data values. We introduce a new interaction data imputation method called network-guided matrix completion (NG-MC). The core part of NG-MC is low-rank probabilistic matrix completion that incorporates prior knowledge presented as a collection of gene networks. NG-MC assumes that interactions are transitive, such that latent gene interaction profiles inferred by NG-MC depend on the profiles of their direct neighbors in gene networks. As the NG-MC inference algorithm progresses, it propagates latent interaction profiles through each of the networks and updates gene network weights toward improved prediction. In a study with four different E-MAP data assays and considered protein–protein interaction and gene ontology similarity networks, NG-MC significantly surpassed existing alternative techniques. Inclusion of information from gene networks also allowed NG-MC to predict interactions for genes that were not included in original E-MAP assays, a task that could not be considered by current imputation approaches. PMID:25658751

76 FR 45215 - Proposed Flood Elevation Determinations

Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-28

... Insurance Rate Map located at the community map repository (see below) for exact locations of all BFEs to be.... ADDRESSES City of Chillicothe Maps are available for inspection at 908 North 2nd Street, Chillicothe, IL 61523. City of Pekin Maps are available for inspection at City Hall, 111 South Capital Street, Pekin, IL...

Effects of the soil-forming factors climate and time on soils of Mount Cameroon (Central Africa)

NASA Astrophysics Data System (ADS)

Sauer, Daniela; Nguetnkam, Jean Pierre; Tenzer, Selina; Herrmann, Ludger; Rennert, Thilo

2017-04-01

Knowledge on rates of soil-forming processes in humid-tropical climate is limited, mainly because objects that are suitable for studying soil chronosequences are rare in tropical regions. Mt. Cameroon, located at the Gulf of Guinea in SW Cameroon, between latitudes 4°00' to 4°20'N, is an ideal object for this purpose. Its volcanic activity started 11 Ma ago and still continues today, providing lava flows of different ages and rather uniform basaltic composition. The climate of the area is humid-tropical, characterised by a distinct gradient in mean annual precipitation (MAP). MAP amounts to > 9000 mm on the SW flank, near the coast, decreasing to < 2000 mm on the opposite flank, in the rain shadow of Mt. Cameroon's peak. Eight soil profiles, including six on historical lava flows of different ages and two on older (Holocene) lava flows characterised by contrasting MAP, were described and analysed. Soil formation proceeds from Nudilithic Leptosol (on a 13 year-old lava flow) to Skeletic Mollic Leptic Vitric Silandic Andosol (54 years), Umbric Leptic Silandic Andosol (91 and 104 years), and finally to Umbric Silandic Andosol (Holocene, MAP 2400 mm) or Umbric Amphisilandic Endoaluandic Andosol (Holocene, MAP 8000 mm). The general trends of Fed/Fet and (Ca+Mg+K+Na)/Al molar ratios over time indicate progressive weathering, formation of pedogenic iron oxides, and leaching of Ca, Mg, K and Na. Irregular uppermost parts of the depth curves of these ratios in some soils suggest addition of fresh ash or dust. Organic matter (OM) contents are remarkably high in the 104 year-old soils that are located at 3000 m a.s.l., compared to all other analysed soils. A possible explanation is that biomass production and thus OM input are still high at this elevation, whereas the altitudinal temperature decline leads to decreased OM decomposition compared to the lower slope.

A Fast linking approach for CMYK to CMYK conversion preserving black separation in ICC color management system

NASA Astrophysics Data System (ADS)

Zeng, Huanzhao

2003-12-01

In the linking step of the standard ICC color management workflow for CMYK to CMYK conversion, a CMM takes an AToBn tag (n = 0, 1, or 2) from a source ICC profile to convert a color from the source color space to PCS (profile connection space), and then takes a BToAn tag from the destination ICC profile to convert the color from PCS to the destination color space. This approach may give satisfactory result perceptually or colorimetrically. However, it does not preserve the K channel for CMYK to CMYK conversion, which is often required in graphic art"s market. The problem is that the structure of a BtoAn tag is designed to convert colors from PCS to a device color space ignoring the K values from the source color space. Different approaches have been developed to control K in CMYK to CMYK printing, yet none of them well fits into the "Profile - PCS - Profile" model in the ICC color management system. A traditional approach is to transform the source CMYK to the destination CMYK by 1-D TRC curves and GCR/UCR tables. This method is so simple that it cannot accurately transform colors perceptually or colorimetrically. Another method is to build a 4-D CMYK to CMYK closed-loop lookup table (LUT) (or a deviceLink ICC profile) for the color transformation. However, this approach does not fit into opened color management workflows for it ties the source and the destination color spaces in the color characterization step. A specialized CMM may preserve K for a limit number of colors by mapping those CMYK colors to some carefully chosen PCS colors in both the AToBi tag and the BToAi tag. A more complete solution is to move to smart linking in which gamut mapping is performed in the real-time linking at a CMM. This method seems to solve all problems existed in the CMYK to CMYK conversion. However, it introduces new problems: 1) gamut mapping at real-time linking is often unacceptable slow; 2) gamut mapping may not be optimized or may be unreliable; 3) manual adjustment for building high quality maps does not fit to the smart CMM workflow. A new approach is described in this paper to solve these problems. Instead of using a BtoAn tag from the destination profile for color transformation, a new tag is created to map colors in PCS (L*a*b* or XYZ) with different K values to different CMY values. A set of 3-D LUTs for different K values are created for the conversion from PCS to CMY, and 1-D LUTs are created for the conversion from luminance to K and to guide a CMM to perform the interpolation from KPCS (K plus PCS) to CMYK. The gamut mapping is performed in the step to create the profile, thus avoiding realtime gamut mapping in a CMM. With this approach, the black channel is preserved; the "Profile - PCS - Profile" approach is still valid; and the gamut mapping is not performed during linking in a CMM. Therefore, gamut mapping can be manually adjusted for high quality color mapping, the linking is almost as easy and fast as the standard linking, and the black channel is preserved.

Domestic well locations and populations served in the contiguous U.S.: 1990

USGS Publications Warehouse

Johnson, Tyler; Belitz, Kenneth

2017-01-01

We estimate the location and population served by domestic wells in the contiguous United States in two ways: (1) the “Block Group Method” or BGM, uses data from the 1990 census, and (2) the “Road-Enhanced Method” or REM, refines the locations by using a buffer expansion and shrinkage technique along roadways to define areas where domestic wells exist. The fundamental assumption is that houses (and therefore domestic wells) are located near a named road. The results are presented as two nationally-consistent domestic-well population datasets.While both methods can be considered valid, the REM map is more precise in locating domestic wells; the REM map has a smaller amount of spatial bias (Type 1 and Type 2 errors nearly equal vs biased in Type 1), total error (10.9% vs 23.7%), and distance error (2.0 km vs 2.7 km), when comparing the REM and BGM maps to a calibration map in California. However, the BGM map is more inclusive of all potential locations for domestic wells. Independent domestic well datasets from the USGS, and the States of MN, NV, and TX show that the BGM captures about 5 to 10% more wells than the REM.One key difference between the BGM and the REM is the mapping of low density areas. The REM reduces areas mapped as low density by 57%, concentrating populations into denser regions. Therefore, if one is trying to capture all of the potential areas of domestic-well usage, then the BGM map may be more applicable. If location is more imperative, then the REM map is better at identifying areas of the landscape with the highest probability of finding a domestic well. Depending on the purpose of a study, a combination of both maps can be used.

Are neural correlates of visual consciousness retinotopic?

PubMed

ffytche, Dominic H; Pins, Delphine

2003-11-14

Some visual neurons code what we see, their defining characteristic being a response profile which mirrors conscious percepts rather than veridical sensory attributes. One issue yet to be resolved is whether, within a given cortical area, conscious visual perception relates to diffuse activity across the entire population of such cells or focal activity within the sub-population mapping the location of the perceived stimulus. Here we investigate the issue in the human brain with fMRI, using a threshold stimulation technique to dissociate perceptual from non-perceptual activity. Our results point to a retinotopic organisation of perceptual activity in early visual areas, with independent perceptual activations for different regions of visual space.

Design and update of a classification system: the UCSD map of science.

PubMed

Börner, Katy; Klavans, Richard; Patek, Michael; Zoss, Angela M; Biberstine, Joseph R; Light, Robert P; Larivière, Vincent; Boyack, Kevin W

2012-01-01

Global maps of science can be used as a reference system to chart career trajectories, the location of emerging research frontiers, or the expertise profiles of institutes or nations. This paper details data preparation, analysis, and layout performed when designing and subsequently updating the UCSD map of science and classification system. The original classification and map use 7.2 million papers and their references from Elsevier's Scopus (about 15,000 source titles, 2001-2005) and Thomson Reuters' Web of Science (WoS) Science, Social Science, Arts & Humanities Citation Indexes (about 9,000 source titles, 2001-2004)-about 16,000 unique source titles. The updated map and classification adds six years (2005-2010) of WoS data and three years (2006-2008) from Scopus to the existing category structure-increasing the number of source titles to about 25,000. To our knowledge, this is the first time that a widely used map of science was updated. A comparison of the original 5-year and the new 10-year maps and classification system show (i) an increase in the total number of journals that can be mapped by 9,409 journals (social sciences had a 80% increase, humanities a 119% increase, medical (32%) and natural science (74%)), (ii) a simplification of the map by assigning all but five highly interdisciplinary journals to exactly one discipline, (iii) a more even distribution of journals over the 554 subdisciplines and 13 disciplines when calculating the coefficient of variation, and (iv) a better reflection of journal clusters when compared with paper-level citation data. When evaluating the map with a listing of desirable features for maps of science, the updated map is shown to have higher mapping accuracy, easier understandability as fewer journals are multiply classified, and higher usability for the generation of data overlays, among others.

Design and Update of a Classification System: The UCSD Map of Science

PubMed Central

Börner, Katy; Klavans, Richard; Patek, Michael; Zoss, Angela M.; Biberstine, Joseph R.; Light, Robert P.; Larivière, Vincent; Boyack, Kevin W.

2012-01-01

Global maps of science can be used as a reference system to chart career trajectories, the location of emerging research frontiers, or the expertise profiles of institutes or nations. This paper details data preparation, analysis, and layout performed when designing and subsequently updating the UCSD map of science and classification system. The original classification and map use 7.2 million papers and their references from Elsevier’s Scopus (about 15,000 source titles, 2001–2005) and Thomson Reuters’ Web of Science (WoS) Science, Social Science, Arts & Humanities Citation Indexes (about 9,000 source titles, 2001–2004)–about 16,000 unique source titles. The updated map and classification adds six years (2005–2010) of WoS data and three years (2006–2008) from Scopus to the existing category structure–increasing the number of source titles to about 25,000. To our knowledge, this is the first time that a widely used map of science was updated. A comparison of the original 5-year and the new 10-year maps and classification system show (i) an increase in the total number of journals that can be mapped by 9,409 journals (social sciences had a 80% increase, humanities a 119% increase, medical (32%) and natural science (74%)), (ii) a simplification of the map by assigning all but five highly interdisciplinary journals to exactly one discipline, (iii) a more even distribution of journals over the 554 subdisciplines and 13 disciplines when calculating the coefficient of variation, and (iv) a better reflection of journal clusters when compared with paper-level citation data. When evaluating the map with a listing of desirable features for maps of science, the updated map is shown to have higher mapping accuracy, easier understandability as fewer journals are multiply classified, and higher usability for the generation of data overlays, among others. PMID:22808037

Method for mapping a natural gas leak

DOEpatents

Reichardt, Thomas A [Livermore, CA; Luong, Amy Khai [Dublin, CA; Kulp, Thomas J [Livermore, CA; Devdas, Sanjay [Albany, CA

2009-02-03

A system is described that is suitable for use in determining the location of leaks of gases having a background concentration. The system is a point-wise backscatter absorption gas measurement system that measures absorption and distance to each point of an image. The absorption measurement provides an indication of the total amount of a gas of interest, and the distance provides an estimate of the background concentration of gas. The distance is measured from the time-of-flight of laser pulse that is generated along with the absorption measurement light. The measurements are formatted into an image of the presence of gas in excess of the background. Alternatively, an image of the scene is superimposed on the image of the gas to aid in locating leaks. By further modeling excess gas as a plume having a known concentration profile, the present system provides an estimate of the maximum concentration of the gas of interest.

Index of surface-water stations in Texas, January 1986

USGS Publications Warehouse

Carrillo, E.R.; Buckner, H.D.; Rawson, Jack

1986-01-01

As of January 1, 1986, the surface-water data-collection network in Texas operated by the U.S. Geological Survey included 386 streamflow, 87 reservoir-contents, 33 stage, 10 crest-stage partial-record, 8 periodic discharge through range, 38 flood-hydrograph partial-record, 11 flood-profile partial-record , 36 low-flow partial-record 2 tide-level, 45 daily chemical-quality, 23 continuous-recording water-quality, 97 periodic biological, 19 lake surveys, 174 periodic organic- and (or) nutrient, 4 periodic insecticide, 58 periodic pesticide, 22 automatic sampler, 157 periodic minor elements, 141 periodic chemical-quality, 108 periodic physical-organic, 14 continuous-recording three- or four-parameter water-quality, 3 sediment, 39 periodic sediment, 26 continuous-recording temperature, and 37 national stream-quality accounting network stations were in operation. Tables describing the station location, type of data collected, and place where data are available are included, as well as maps showing the location of most of the stations. (USGS)

Application of Time-Domain Electromagnetic Method in Investigating Saltwater Intrusion of Santiago Island (Cape Verde)

NASA Astrophysics Data System (ADS)

Gonçalves, Rui; Farzamian, Mohammad; Monteiro Santos, Fernando A.; Represas, Patrícia; Mota Gomes, A.; Lobo de Pina, A. F.; Almeida, Eugénio P.

2017-11-01

Santiago Island, the biggest and most populated island of the Cape Verde Republic, is characterised by limited surface waters and strong dependence on groundwater sources as the primary source of natural water supply for extensive agricultural activity and human use. However, as a consequence of the scarce precipitation and high evaporation as well as the intense overexploitation of the groundwater resources, the freshwater management is also in a delicate balance with saltwater at coastal areas. The time-domain electromagnetic (TDEM) method is used to locate the extent of saltwater intrusion in four important agricultural regions in Santiago Island; São Domingos, Santa Cruz, São Miguel, and Tarrafal. The application of this method in Santiago Island proves it to be a successful tool in imaging the fresh/saltwater interface location. Depths to the saline zones and extensions of saline water are mapped along eight TDEM profiles.

Spatial data analysis and the use of maps in scientific health articles.

PubMed

Nucci, Luciana Bertoldi; Souccar, Patrick Theodore; Castilho, Silvia Diez

2016-07-01

Despite the growing number of studies with a characteristic element of spatial analysis, the application of the techniques is not always clear and its continuity in epidemiological studies requires careful evaluation. To verify the spread and use of those processes in national and international scientific papers. An assessment was made of periodicals according to the impact index. Among 8,281 journals surveyed, four national and four international were selected, of which 1,274 articles were analyzed regarding the presence or absence of spatial analysis techniques. Just over 10% of articles published in 2011 in high impact journals, both national and international, showed some element of geographical location. Although these percentages vary greatly from one journal to another, denoting different publication profiles, we consider this percentage as an indication that location variables have become an important factor in studies of health.

Solar Sail Attitude Control Performance Comparison

NASA Technical Reports Server (NTRS)

Bladt, Jeff J.; Lawrence, Dale A.

2005-01-01

Performance of two solar sail attitude control implementations is evaluated. One implementation employs four articulated reflective vanes located at the periphery of the sail assembly to generate control torque about all three axes. A second attitude control configuration uses mass on a gimbaled boom to alter the center-of-mass location relative to the center-of-pressure producing roll and pitch torque along with a pair of articulated control vanes for yaw control. Command generation algorithms employ linearized dynamics with a feedback inversion loop to map desired vehicle attitude control torque into vane and/or gimbal articulation angle commands. We investigate the impact on actuator deflection angle behavior due to variations in how the Jacobian matrix is incorporated into the feedback inversion loop. Additionally, we compare how well each implementation tracks a commanded thrust profile, which has been generated to follow an orbit trajectory from the sun-earth L1 point to a sub-L1 station.

A Radio-Map Automatic Construction Algorithm Based on Crowdsourcing

PubMed Central

Yu, Ning; Xiao, Chenxian; Wu, Yinfeng; Feng, Renjian

2016-01-01

Traditional radio-map-based localization methods need to sample a large number of location fingerprints offline, which requires huge amount of human and material resources. To solve the high sampling cost problem, an automatic radio-map construction algorithm based on crowdsourcing is proposed. The algorithm employs the crowd-sourced information provided by a large number of users when they are walking in the buildings as the source of location fingerprint data. Through the variation characteristics of users’ smartphone sensors, the indoor anchors (doors) are identified and their locations are regarded as reference positions of the whole radio-map. The AP-Cluster method is used to cluster the crowdsourced fingerprints to acquire the representative fingerprints. According to the reference positions and the similarity between fingerprints, the representative fingerprints are linked to their corresponding physical locations and the radio-map is generated. Experimental results demonstrate that the proposed algorithm reduces the cost of fingerprint sampling and radio-map construction and guarantees the localization accuracy. The proposed method does not require users’ explicit participation, which effectively solves the resource-consumption problem when a location fingerprint database is established. PMID:27070623

Research on strategy marine noise map based on i4ocean platform: Constructing flow and key approach

NASA Astrophysics Data System (ADS)

Huang, Baoxiang; Chen, Ge; Han, Yong

2016-02-01

Noise level in a marine environment has raised extensive concern in the scientific community. The research is carried out on i4Ocean platform following the process of ocean noise model integrating, noise data extracting, processing, visualizing, and interpreting, ocean noise map constructing and publishing. For the convenience of numerical computation, based on the characteristics of ocean noise field, a hybrid model related to spatial locations is suggested in the propagation model. The normal mode method K/I model is used for far field and ray method CANARY model is used for near field. Visualizing marine ambient noise data is critical to understanding and predicting marine noise for relevant decision making. Marine noise map can be constructed on virtual ocean scene. The systematic marine noise visualization framework includes preprocessing, coordinate transformation interpolation, and rendering. The simulation of ocean noise depends on realistic surface. Then the dynamic water simulation gird was improved with GPU fusion to achieve seamless combination with the visualization result of ocean noise. At the same time, the profile and spherical visualization include space, and time dimensionality were also provided for the vertical field characteristics of ocean ambient noise. Finally, marine noise map can be published with grid pre-processing and multistage cache technology to better serve the public.

Maps Showing Geology and Shallow Structure of Eastern Rhode Island Sound and Vineyard Sound, Massachusetts

USGS Publications Warehouse

O'Hara, Charles J.; Oldale, Robert N.

1980-01-01

This report presents results of marine studies conducted by the U.S. Geological Survey (USGS) during the summers of 1975 and 1976 in eastern Rhode Island Sound and Vineyard Sound (fig. 1) located off the southeastern coast of Massachusetts. The study was made in cooperation with the Massachusetts Department of Public Works and the New England Division of the U.S. Army Corps of Engineers. It covered an area of the Atlantic Inner Continental Shelf between latitude 41 deg 12' and 41 deg 33'N, and between longitude 70 deg 37' and 71 deg 15'W (see index map). Major objectives included assessment of sand and gravel resources, environmental impact evaluation both of offshore mining of these resources and of offshore disposal of solid waste and dredge spoil material, identification and mapping of the offshore geology, and determination of the geologic history of this part of the Inner Shelf. A total of 670 kilometers (km) of closely spaced high-resolution seismic-reflection profiles, 224 km of side-scan sonar data, and 16 cores totaling 90 meters (m) of recovered sediment, were collected during the investigation. This report is companion to geologic maps published for Cape Cod Bay (Oldale and O'Hara, 1975) and Buzzards Bay, Mass. (Robb and Oldale, 1977).

Researchermap: a tool for visualizing author locations using Google maps.

PubMed

Rastegar-Mojarad, Majid; Bales, Michael E; Yu, Hong

2013-01-01

We hereby present ResearcherMap, a tool to visualize locations of authors of scholarly papers. In response to a query, the system returns a map of author locations. To develop the system we first populated a database of author locations, geocoding institution locations for all available institutional affiliation data in our database. The database includes all authors of Medline papers from 1990 to 2012. We conducted a formative heuristic usability evaluation of the system and measured the system's accuracy and performance. The accuracy of finding the accurate address is 97.5% in our system.

Mapping soil textural fractions across a large watershed in north-east Florida.

PubMed

Lamsal, S; Mishra, U

2010-08-01

Assessment of regional scale soil spatial variation and mapping their distribution is constrained by sparse data which are collected using field surveys that are labor intensive and cost prohibitive. We explored geostatistical (ordinary kriging-OK), regression (Regression Tree-RT), and hybrid methods (RT plus residual Sequential Gaussian Simulation-SGS) to map soil textural fractions across the Santa Fe River Watershed (3585 km(2)) in north-east Florida. Soil samples collected from four depths (L1: 0-30 cm, L2: 30-60 cm, L3: 60-120 cm, and L4: 120-180 cm) at 141 locations were analyzed for soil textural fractions (sand, silt and clay contents), and combined with textural data (15 profiles) assembled under the Florida Soil Characterization program. Textural fractions in L1 and L2 were autocorrelated, and spatially mapped across the watershed. OK performance was poor, which may be attributed to the sparse sampling. RT model structure varied among textural fractions, and the model explained variations ranged from 25% for L1 silt to 61% for L2 clay content. Regression residuals were simulated using SGS, and the average of simulated residuals were used to approximate regression residual distribution map, which were added to regression trend maps. Independent validation of the prediction maps showed that regression models performed slightly better than OK, and regression combined with average of simulated regression residuals improved predictions beyond the regression model. Sand content >90% in both 0-30 and 30-60 cm covered 80.6% of the watershed area. Copyright 2010 Elsevier Ltd. All rights reserved.

Hydraulic tomography offers improved imaging of heterogeneity in fractured rocks.

PubMed

Illman, Walter A

2014-01-01

Fractured rocks have presented formidable challenges for accurately predicting groundwater flow and contaminant transport. This is mainly due to our difficulty in mapping the fracture-rock matrix system, their hydraulic properties and connectivity at resolutions that are meaningful for groundwater modeling. Over the last several decades, considerable effort has gone into creating maps of subsurface heterogeneity in hydraulic conductivity (K) and specific storage (Ss ) of fractured rocks. Developed methods include kriging, stochastic simulation, stochastic inverse modeling, and hydraulic tomography. In this article, I review the evolution of various heterogeneity mapping approaches and contend that hydraulic tomography, a recently developed aquifer characterization technique for unconsolidated deposits, is also a promising approach in yielding robust maps (or tomograms) of K and Ss heterogeneity for fractured rocks. While hydraulic tomography has recently been shown to be a robust technique, the resolution of the K and Ss tomograms mainly depends on the density of pumping and monitoring locations and the quality of data. The resolution will be improved through the development of new devices for higher density monitoring of pressure responses at discrete intervals in boreholes and potentially through the integration of other data from single-hole tests, borehole flowmeter profiling, and tracer tests. Other data from temperature and geophysical surveys as well as geological investigations may improve the accuracy of the maps, but more research is needed. Technological advances will undoubtedly lead to more accurate maps. However, more effort should go into evaluating these maps so that one can gain more confidence in their reliability. © 2013, National Ground Water Association.

Hydraulic tomography offers improved imaging of heterogeneity in fractured rocks

NASA Astrophysics Data System (ADS)

Illman, W. A.

2013-12-01

Fractured rocks have presented formidable challenges for accurately predicting groundwater flow and contaminant transport. This is mainly due to our difficulty in mapping the fracture-rock matrix system, their hydraulic properties and connectivity at resolutions that are meaningful for groundwater flow and especially transport modeling. Over the last several decades, considerable effort has gone into creating maps of subsurface heterogeneity in hydraulic conductivity (K) and specific storage (Ss) of fractured rocks. Developed methods include kriging, stochastic simulation, stochastic inverse modeling, and hydraulic tomography. In this presentation, I review the evolution of various heterogeneity mapping approaches and contend that hydraulic tomography, a recently developed aquifer characterization technique for unconsolidated deposits, is also a promising approach in yielding robust maps (or tomograms) of K and Ss heterogeneity for fractured rocks. While hydraulic tomography has recently been shown to be a robust technique, the resolution of the K and Ss tomograms mainly depends on the density of pumping and monitoring locations and the quality of data. The resolution will be improved through the development of new devices for higher density monitoring of pressure responses at discrete intervals in boreholes and potentially through the integration of other data from single-hole tests, borehole flowmeter profiling and tracer tests. Other data from temperature and geophysical surveys as well as geological investigations may improve the accuracy of the maps, but more research is needed. Technological advances will undoubtedly lead to more accurate maps. However, more effort should go into evaluating these maps so that one can gain more confidence in their reliability.

Radiometric Survey in Western Afghanistan: A Website for Distribution of Data

USGS Publications Warehouse

Sweeney, Ronald E.; Kucks, Robert P.; Hill, Patricia L.; Finn, Carol A.

2007-01-01

Radiometric (uranium content, thorium content, potassium content, and gamma-ray intensity) and related data were digitized from radiometric and survey route location maps of western Afghanistan published in 1976. The uranium content data were digitized along contour lines from 33 maps in a series entitled 'Map of Uranium (Radium) Contents of Afghanistan (Western Area),' compiled by V. N. Kirsanov and R. S. Dershimanov. The thorium content data were digitized along contour lines from 33 maps in a series entitled 'Map of Thorium Contents of Afghanistan (Western Area),' compiled by V. N. Kirsanov and R. S. Dershimanov. The potassium content data were digitized along contour lines from 33 maps in a series entitled 'Map of Potassium Contents of Afghanistan (Western Area),' compiled by V. N. Kirsanov and R. S. Dershimanov. The gamma-ray intensity data were digitized along contour lines from 33 maps in a series entitled 'Map of Gamma-Field of Afghanistan (Western Area),' compiled by V. N. Kirsanov and R. S. Dershimanov. The survey route location data were digitized along flight-lines located on 33 maps in a series entitled 'Survey Routes Location and Contours of Flight Equal Altitudes. Western Area of Afghanistan,' compiled by Z. A. Alpatova, V. G. Kurnosov, and F. A. Grebneva.

Fault Imaging with High-Resolution Seismic Reflection for Earthquake Hazard and Geothermal Resource Assessment in Reno, Nevada

DOE Office of Scientific and Technical Information (OSTI.GOV)

Frary, Roxanna

2012-05-05

The Truckee Meadows basin is situated adjacent to the Sierra Nevada microplate, on the western boundary of the Walker Lane. Being in the transition zone between a range-front normal fault on the west and northwest-striking right-lateral strike slip faults to the east, there is no absence of faulting in this basin. The Reno- Sparks metropolitan area is located in this basin, and with a signi cant population living here, it is important to know where these faults are. High-resolution seismic reflection surveys are used for the imaging of these faults along the Truckee River, across which only one fault wasmore » previously mapped, and in southern Reno near and along Manzanita Lane, where a swarm of short faults has been mapped. The reflection profiles constrain the geometries of these faults, and suggest additional faults not seen before. Used in conjunction with depth to bedrock calculations and gravity measurements, the seismic reflection surveys provide de nitive locations of faults, as well as their orientations. O sets on these faults indicate how active they are, and this in turn has implications for seismic hazard in the area. In addition to seismic hazard, the faults imaged here tell us something about the conduits for geothermal fluid resources in Reno.« less

Integrated geoelectrical survey for groundwater and shallow subsurface evaluation: case study at Siliyin spring, El-Fayoum, Egypt

NASA Astrophysics Data System (ADS)

Metwaly, Mohamed; El-Qady, Gad; Massoud, Usama; El-Kenawy, Abeer; Matsushima, Jun; Al-Arifi, Nasser

2010-09-01

Siliyin spring is one of the many natural fresh water springs in the Western Desert of Egypt. It is located at the central part of El-Fayoum Delta, which is a potential place for urban developments and touristic activities. Integrated geoelectrical survey was conducted to facilitate mapping the groundwater resources and the shallow subsurface structures in the area. Twenty-eight transient electromagnetic (TEM) soundings, three vertical electrical soundings (VES) and three electrical resistivity tomography (ERT) profiles were carried out around the Siliyin spring location. The dense cultivation, the rugged topography and the existence of infra structure in the area hindered acquiring more data. The TEM data were inverted jointly with the VES and ERT, and constrained by available geological information. Based on the inversion results, a set of geoelectrical cross-sections have been constructed. The shallow sand to sandy clay layer that forms the shallow aquifer has been completely mapped underneath and around the spring area. Flowing of water from the Siliyin spring is interconnected with the lateral lithological changes from clay to sand soil. Exploration of the extension of Siliyin spring zone is recommended. The interpretation emphasizes the importance of integrating the geoelectrical survey with the available geological information to obtain useful, cheap and fast lithological and structural subsurface information.

Frames of reference for helicopter electronic maps - The relevance of spatial cognition and componential analysis

NASA Technical Reports Server (NTRS)

Harwood, Kelly; Wickens, Christopher D.

1991-01-01

Computer-generated map displays for NOE and low-level helicopter flight were formed according to prior research on maps, navigational problem solving, and spatial cognition in large-scale environments. The north-up map emphasized consistency of object location, wheareas, the track-up map emphasized map-terrain congruency. A component analysis indicates that different cognitive components, e.g., orienting and absolute object location, are supported to varying degrees by properties of different frames of reference.

Profiling Bioactivity of the ToxCast Chemical Library Using BioMAP Primary Human Cell Systems

EPA Science Inventory

The complexity of human biology has made prediction of health effects as a consequence of exposure to environmental chemicals especially challenging. Complex cell systems, such as the Biologically Multiplexed Activity Profiling (BioMAP) primary, human, cell-based disease models, ...

A Mapping Model for Magnetic Fields with q-profile Variations Typical of Internal Transport Barrier Experiments

NASA Astrophysics Data System (ADS)

Rapoport, B. I.; Pavlenko, I.; Weyssow, B.; Carati, D.

2002-11-01

Recent studies of ion and electron transport indicate that the safety factor profile, q(r), affects internal transport barrier (ITB) formation in magnetic confinement devices [1, 2]. These studies are consistent with experimental observations that low shear suppresses magnetic island interaction and associated stochasticity when the ITB is formed [3]. In this sense the position and quality of the ITB depend on the stochasticity of the magnetic field, and can be controlled by q(r). This study explores effects of the q-profile on magnetic field stochasticity using two-dimensional mapping techniques. Q-profiles typical of ITB experiments are incorporated into Hamiltonian maps to investigate the relation between magnetic field stochasticity and ITB parameters predicted by other models. It is shown that the mapping technique generates results consistent with these predictions, and suggested that Hamiltonian mappings can be useful as simple and computationally inexpensive approximation methods for describing the magnetic field in ITB experiments. 1. I. Voitsekhovitch et al. 29th EPS Conference on Plasma Physics and Controlled Fusion (2002). O-4.04. 2. G.M.D. Hogeweij et al. Nucl. Fusion. 38 (1998): 1881. 3. K.A. Razumova et al. Plasma Phys. Contr. Fusion. 42 (2000): 973.

Using GeoMapApp in the Classroom

NASA Astrophysics Data System (ADS)

Goodwillie, A. M.

2017-12-01

The GeoMapApp tool has been updated with enhanced functionality that is useful in the classroom. Hosted as a service of the IEDA Facility at Columbia University, GeoMapApp (http://www.geomapapp.org) is a free resource that integrates a wide range of research-grade geoscience data in one intuitive map-based interface. It includes earthquake and volcano data, geological maps, plate tectonic data sets, and a high-resolution topography/bathymetry base map. Users can also import and analyse their own data files. Layering and transparency capabilities allow users to compare multiple data sets at once. The GeoMapApp interface presents data in its proper geospatial context, helping students more easily gain insight and understanding from the data. Simple tools for data manipulation allow students to analyse the data in different ways such as generating profiles and producing visualisations for reports. The new Save Session capability is designed to assist in the classroom: The educator saves a pre-loaded state of GeoMapApp. When shared with the class, the saved session file allows students to open GeoMapApp with exactly the same data sets loaded and the same display parameters chosen thus freeing up valuable time in which students can explore the data. In this presentation, activities related to plate tectonics will be highlighted. One activity helps students investigate plate boundaries by exploring earthquake and volcano locations. Another requires students to calculate the rate of seafloor spreading using crustal age data in various ocean basins. A third uses the GeoMapApp layering technique to explore the influence of geological forces in shaping the landscape. Educators report that using GeoMapApp in the classroom lowers the barriers to data accessibility for students; fosters an increased sense of data "ownership" - GeoMapApp presents the same data in the same tool used by researchers; allows engagement with authentic geoscience data; promotes STEM skills and exposure.

JournalMap: Research. Reimagined.

USDA-ARS?s Scientific Manuscript database

JournalMap is a scientific literature search engine that empowers you to find relevant research based on location and biophysical variables as well as traditional keyword searches. All publications are geotagged based on reported location information and plotted on a world map showing where the rese...

Gravity and magnetic data across the Ghost Dance Fault in WT-2 Wash, Yucca Mountain, Nevada

DOE Office of Scientific and Technical Information (OSTI.GOV)

Oliver, H.W.; Sikora, R.F.

1994-12-31

Detailed gravity and ground magnetic data were obtained in September 1993 along a 4,650 ft-long profile across the Ghost Dance Fault system in WT-2 Wash. Gravity stations were established every 150 feet along the profile. Total-field magnetic measurements made initially every 50 ft along the profile, then remade every 20 ft through the fault zone. These new data are part of a geologic and geophysical study of the Ghost Dance Fault (GDF) which includes detailed geologic mapping, seismic reflection, and some drilling including geologic and geophysical logging. The Ghost Dance Fault is the only through-going fault that has been identifiedmore » within the potential repository for high-level radioactive waste at Yucca Mountain, Nevada. Preliminary gravity results show a distinct decrease of 0.1 to 0.2 mGal over a 600-ft-wide zone to the east of and including the mapped fault. The gravity decrease probably marks a zone of brecciation. Another fault-offset located about 2,000 ft to the east of the GDF was detected by seismic reflection data and is also marked by a distinct gravity low. The ground magnetic data show a 200-ft-wide magnetic low of about 400 nT centered about 100 ft east of the Ghost Dance Fault. The magnetic low probably marks a zone of brecciation within the normally polarized Topopah Spring Tuff, the top of which is about 170 ft below the surface, and which is known from drilling to extend to a depth of about 1,700 ft. Three-component magnetometer logging in drill hole WT-2 located about 2,700 ft east of the Ghost Dance Fault shows that the Topopah Spring Tuff is strongly polarized magnetically in this area, so that fault brecciation of a vertical zone within the Tuff could provide an average negative magnetic contrast of the 4 Am{sup {minus}1} needed to produce the 400 nT low observed at the surface.« less

Teaching Map Concepts in Social Science Education; an Evaluation with Undergraduate Students

NASA Astrophysics Data System (ADS)

Bugdayci, Ilkay; Zahit Selvi, H.

2017-12-01

One of the most important aim of the geography and social science courses is to gain the ability of reading, analysing and understanding maps. There are a lot of themes related with maps and map concepts in social studies education. Geographical location is one of the most important theme. Geographical location is specified by geographical coordinates called latitude and longitude. The geographical coordinate system is the primary spatial reference system of the earth. It is always used in cartography, in geography, in basic location calculations such as navigation and surveying. It’s important to support teacher candidates, to teach maps and related concepts. Cartographers also have important missions and responsibilities in this context. The purpose of this study is to evaluate the knowledge of undergraduate students, about the geographical location. For this purpose, a research has been carried out on questions and activities related to geographical location and related concepts. The details and results of the research conducted by the students in the study are explained.

Completeness and Reliability of Location Data Collected on the Web: Assessing the Quality of Self-Reported Locations in an Internet Sample of Men Who Have Sex With Men.

PubMed

Vaughan, Adam S; Kramer, Michael R; Cooper, Hannah Lf; Rosenberg, Eli S; Sullivan, Patrick S

2016-06-09

Place is critical to our understanding of human immunodeficiency virus (HIV) infections among men who have sex with men (MSM) in the United States. However, within the scientific literature, place is almost always represented by residential location, suggesting a fundamental assumption of equivalency between neighborhood of residence, place of risk, and place of prevention. However, the locations of behaviors among MSM show significant spatial variation, and theory has posited the importance of nonresidential contextual exposures. This focus on residential locations has been at least partially necessitated by the difficulties in collecting detailed geolocated data required to explore nonresidential locations. Using a Web-based map tool to collect locations, which may be relevant to the daily lives and health behaviors of MSM, this study examines the completeness and reliability of the collected data. MSM were recruited on the Web and completed a Web-based survey. Within this survey, men used a map tool embedded within a question to indicate their homes and multiple nonresidential locations, including those representing work, sex, socialization, physician, and others. We assessed data quality by examining data completeness and reliability. We used logistic regression to identify demographic, contextual, and location-specific predictors of answering all eligible map questions and answering specific map questions. We assessed data reliability by comparing selected locations with other participant-reported data. Of 247 men completing the survey, 167 (67.6%) answered the entire set of eligible map questions. Most participants (>80%) answered specific map questions, with sex locations being the least reported (80.6%). Participants with no college education were less likely than those with a college education to answer all map questions (prevalence ratio, 0.4; 95% CI, 0.2-0.8). Participants who reported sex at their partner's home were less likely to indicate the location of that sex (prevalence ratio, 0.8; 95% CI, 0.7-1.0). Overall, 83% of participants placed their home's location within the boundaries of their reported residential ZIP code. Of locations having a specific text description, the median distance between the participant-selected location and the location determined using the specific text description was 0.29 miles (25th and 75th percentiles, 0.06-0.88). Using this Web-based map tool, this Web-based sample of MSM was generally willing and able to provide accurate data regarding both home and nonresidential locations. This tool provides a mechanism to collect data that can be used in more nuanced studies of place and sexual risk and preventive behaviors of MSM.

Sidescan-Sonar Imagery and Surficial Geologic Interpretations of the Sea Floor in Central Rhode Island Sound

USGS Publications Warehouse

McMullen, K.Y.; Poppe, L.J.; Denny, J.F.; Haupt, T.A.; Crocker, J.M.

2008-01-01

The U.S. Geological Survey (USGS) has been working with the National Oceanic and Atmospheric Administration (NOAA) to interpret the surficial geology of areas along the northeastern coast of the United States. During 2004, the NOAA Ship RUDE conducted Hydrographic Survey H11321 in Rhode Island Sound. This sidescan-sonar and bathymetry survey covers an area of 93 km? located 12 km southeast of Brenton Point, RI in water depths of 28-39 m (fig. 1). The purpose of this report is to delineate sea floor features and sedimentary environments of this area in central Rhode Island Sound using sidescan-sonar and bathymetric data from NOAA Survey H11321 and seismic-reflection data from a previous USGS field study (Needell and others, 1983a). This is important for the study of benthic habitats and provides a framework for future research. Prior work in this area includes the mapping of surface sediments and surficial geology. McMaster (1960) collected sediment samples from Rhode Island Sound and Narragansett Bay and mapped our study area as having a sandy sea floor. In addition, one sample of sand from the National Ocean Service (NOS) Hydrographic Database came from a location in the northeast part of our study area in 1939 (fig. 2; Poppe and others, 2003). McMaster and others (1968) used seismic-reflection profiles to map the locations of a cuesta of Cretaceous sediments crossing Rhode Island Sound and post-Cretaceous drainage channels. Knebel and others (1982) identified sedimentary environments in Rhode Island Sound using sidescan sonographs. Needell and others (1983b) studied the Quaternary geology and mapped the structure, sedimentary environments, and geologic hazards in Rhode Island Sound using sidescan-sonar and seismic-reflection data. Sidescan-sonar and bathymetric data from NOAA Survey H11320, which overlaps the far eastern edge of our study area, was interpreted to consist of basins surrounded by a moraine and bathymetric highs composed of till with areas of rocks, sand waves, hummocks, glaciolacustrine erosional outliers, small scarps and elongate hills (fig. 1; McMullen and others, 2007). Some of those features extend into this study area.

Map showing location of observation wells in Massachusetts and Rhode Island

USGS Publications Warehouse

Rader, J.C.

1995-01-01

This map shows the locations of the 136 observation wells from the observation-well network maintained by the U.S. Geological Survey in Massachusetts and Rhode Island. The wells are identified by town name and well number. The map shows the location of the 10 observation wells that have digital recorders and the 126 observation wells that are measured by local observers. The aquifer material (sand, till, or bedrock) in which a well is located is noted. County and town boundaries are shown on the map. These features are presented at a scale of 1:400,000 (map size is about 38 by 30 inches). The map includes textual information describing the uses of observation-well data. The information is organized by construction, water supply, water quality, and statistical analysis. The map also presents observation well information, which was obtained from the annual data report of the Massachusetts--Rhode Island District. This infor- mation is presented in tabular form and includes town name, well number, aquifer material in which the well is located, and well depth below the land surface. The map was produced from a digital data base using a Geographic Information System. State boundaries were generated from digital line graphs maintained by the U.S. Geological Survey. Town and county boundaries were digitized from stable-base materials maintained by State agencies. The map was prepared in cooperation with State agencies of Massachusetts and Rhode Island.

Mapping Soil Organic Matter with Hyperspectral Imaging

NASA Astrophysics Data System (ADS)

Moni, Christophe; Burud, Ingunn; Flø, Andreas; Rasse, Daniel

2014-05-01

Soil organic matter (SOM) plays a central role for both food security and the global environment. Soil organic matter is the 'glue' that binds soil particles together, leading to positive effects on soil water and nutrient availability for plant growth and helping to counteract the effects of erosion, runoff, compaction and crusting. Hyperspectral measurements of samples of soil profiles have been conducted with the aim of mapping soil organic matter on a macroscopic scale (millimeters and centimeters). Two soil profiles have been selected from the same experimental site, one from a plot amended with biochar and another one from a control plot, with the specific objective to quantify and map the distribution of biochar in the amended profile. The soil profiles were of size (30 x 10 x 10) cm3 and were scanned with two pushbroomtype hyperspectral cameras, one which is sensitive in the visible wavelength region (400 - 1000 nm) and one in the near infrared region (1000 - 2500 nm). The images from the two detectors were merged together into one full dataset covering the whole wavelength region. Layers of 15 mm were removed from the 10 cm high sample such that a total of 7 hyperspectral images were obtained from the samples. Each layer was analyzed with multivariate statistical techniques in order to map the different components in the soil profile. Moreover, a 3-dimensional visalization of the components through the depth of the sample was also obtained by combining the hyperspectral images from all the layers. Mid-infrared spectroscopy of selected samples of the measured soil profiles was conducted in order to correlate the chemical constituents with the hyperspectral results. The results show that hyperspectral imaging is a fast, non-destructive technique, well suited to characterize soil profiles on a macroscopic scale and hence to map elements and different organic matter quality present in a complete pedon. As such, we were able to map and quantify biochar in our profile. Smaller interesting regions can also easily be selected from the hyperspectral images for more detailed study at microscopic scale.

The Mycobacterium avium ssp. paratuberculosis specific mptD gene is required for maintenance of the metabolic homeostasis necessary for full virulence in mouse infections

PubMed Central

Meiß, Thorsten; Eckelt, Elke; Basler, Tina; Meens, Jochen; Heinzmann, Julia; Suwandi, Abdulhadi; Oelemann, Walter M. R.; Trenkamp, Sandra; Holst, Otto; Weiss, Siegfried; Bunk, Boyke; Spröer, Cathrin; Gerlach, Gerald-F.; Goethe, Ralph

2014-01-01

Mycobacterium avium subspecies paratuberculosis (MAP) causes Johne's disease, a chronic granulomatous enteritis in ruminants. Furthermore, infections of humans with MAP have been reported and a possible association with Crohn's disease and diabetes type I is currently discussed. MAP owns large sequence polymorphisms (LSPs) that were exclusively found in this mycobacteria species. The relevance of these LSPs in the pathobiology of MAP is still unclear. The mptD gene (MAP3733c) of MAP belongs to a small group of functionally uncharacterized genes, which are not present in any other sequenced mycobacteria species. mptD is part of a predicted operon (mptABCDEF), encoding a putative ATP binding cassette-transporter, located on the MAP-specific LSP14. In the present study, we generated an mptD knockout strain (MAPΔmptD) by specialized transduction. In order to investigate the potential role of mptD in the host, we performed infection experiments with macrophages. By this, we observed a significantly reduced cell number of MAPΔmptD early after infection, indicating that the mutant was hampered with respect to adaptation to the early macrophage environment. This important role of mptD was supported in mouse infection experiments where MAPΔmptD was significantly attenuated after peritoneal challenge. Metabolic profiling was performed to determine the cause for the reduced virulence and identified profound metabolic disorders especially in the lipid metabolism of MAPΔmptD. Overall our data revealed the mptD gene to be an important factor for the metabolic adaptation of MAP required for persistence in the host. PMID:25177550

The Mycobacterium avium ssp. paratuberculosis specific mptD gene is required for maintenance of the metabolic homeostasis necessary for full virulence in mouse infections.

PubMed

Meißner, Thorsten; Eckelt, Elke; Basler, Tina; Meens, Jochen; Heinzmann, Julia; Suwandi, Abdulhadi; Oelemann, Walter M R; Trenkamp, Sandra; Holst, Otto; Weiss, Siegfried; Bunk, Boyke; Spröer, Cathrin; Gerlach, Gerald-F; Goethe, Ralph

2014-01-01

Mycobacterium avium subspecies paratuberculosis (MAP) causes Johne's disease, a chronic granulomatous enteritis in ruminants. Furthermore, infections of humans with MAP have been reported and a possible association with Crohn's disease and diabetes type I is currently discussed. MAP owns large sequence polymorphisms (LSPs) that were exclusively found in this mycobacteria species. The relevance of these LSPs in the pathobiology of MAP is still unclear. The mptD gene (MAP3733c) of MAP belongs to a small group of functionally uncharacterized genes, which are not present in any other sequenced mycobacteria species. mptD is part of a predicted operon (mptABCDEF), encoding a putative ATP binding cassette-transporter, located on the MAP-specific LSP14. In the present study, we generated an mptD knockout strain (MAPΔmptD) by specialized transduction. In order to investigate the potential role of mptD in the host, we performed infection experiments with macrophages. By this, we observed a significantly reduced cell number of MAPΔmptD early after infection, indicating that the mutant was hampered with respect to adaptation to the early macrophage environment. This important role of mptD was supported in mouse infection experiments where MAPΔmptD was significantly attenuated after peritoneal challenge. Metabolic profiling was performed to determine the cause for the reduced virulence and identified profound metabolic disorders especially in the lipid metabolism of MAPΔmptD. Overall our data revealed the mptD gene to be an important factor for the metabolic adaptation of MAP required for persistence in the host.

Design of refractive laser beam shapers to generate complex irradiance profiles

NASA Astrophysics Data System (ADS)

Li, Meijie; Meuret, Youri; Duerr, Fabian; Vervaeke, Michael; Thienpont, Hugo

2014-05-01

A Gaussian laser beam is reshaped to have specific irradiance distributions in many applications in order to ensure optimal system performance. Refractive optics are commonly used for laser beam shaping. A refractive laser beam shaper is typically formed by either two plano-aspheric lenses or by one thick lens with two aspherical surfaces. Ray mapping is a general optical design technique to design refractive beam shapers based on geometric optics. This design technique in principle allows to generate any rotational-symmetric irradiance profile, yet in literature ray mapping is mainly developed to transform a Gaussian irradiance profile to a uniform profile. For more complex profiles especially with low intensity in the inner region, like a Dark Hollow Gaussian (DHG) irradiance profile, ray mapping technique is not directly applicable in practice. In order to these complex profiles, the numerical effort of calculating the aspherical surface points and fitting a surface with sufficient accuracy increases considerably. In this work we evaluate different sampling approaches and surface fitting methods. This allows us to propose and demonstrate a comprehensive numerical approach to efficiently design refractive laser beam shapers to generate rotational-symmetric collimated beams with a complex irradiance profile. Ray tracing analysis for several complex irradiance profiles demonstrates excellent performance of the designed lenses and the versatility of our design procedure.

QuickMap: a public tool for large-scale gene therapy vector insertion site mapping and analysis.

PubMed

Appelt, J-U; Giordano, F A; Ecker, M; Roeder, I; Grund, N; Hotz-Wagenblatt, A; Opelz, G; Zeller, W J; Allgayer, H; Fruehauf, S; Laufs, S

2009-07-01

Several events of insertional mutagenesis in pre-clinical and clinical gene therapy studies have created intense interest in assessing the genomic insertion profiles of gene therapy vectors. For the construction of such profiles, vector-flanking sequences detected by inverse PCR, linear amplification-mediated-PCR or ligation-mediated-PCR need to be mapped to the host cell's genome and compared to a reference set. Although remarkable progress has been achieved in mapping gene therapy vector insertion sites, public reference sets are lacking, as are the possibilities to quickly detect non-random patterns in experimental data. We developed a tool termed QuickMap, which uniformly maps and analyzes human and murine vector-flanking sequences within seconds (available at www.gtsg.org). Besides information about hits in chromosomes and fragile sites, QuickMap automatically determines insertion frequencies in +/- 250 kb adjacency to genes, cancer genes, pseudogenes, transcription factor and (post-transcriptional) miRNA binding sites, CpG islands and repetitive elements (short interspersed nuclear elements (SINE), long interspersed nuclear elements (LINE), Type II elements and LTR elements). Additionally, all experimental frequencies are compared with the data obtained from a reference set, containing 1 000 000 random integrations ('random set'). Thus, for the first time a tool allowing high-throughput profiling of gene therapy vector insertion sites is available. It provides a basis for large-scale insertion site analyses, which is now urgently needed to discover novel gene therapy vectors with 'safe' insertion profiles.

Probabilistic drug connectivity mapping

PubMed Central

2014-01-01

Background The aim of connectivity mapping is to match drugs using drug-treatment gene expression profiles from multiple cell lines. This can be viewed as an information retrieval task, with the goal of finding the most relevant profiles for a given query drug. We infer the relevance for retrieval by data-driven probabilistic modeling of the drug responses, resulting in probabilistic connectivity mapping, and further consider the available cell lines as different data sources. We use a special type of probabilistic model to separate what is shared and specific between the sources, in contrast to earlier connectivity mapping methods that have intentionally aggregated all available data, neglecting information about the differences between the cell lines. Results We show that the probabilistic multi-source connectivity mapping method is superior to alternatives in finding functionally and chemically similar drugs from the Connectivity Map data set. We also demonstrate that an extension of the method is capable of retrieving combinations of drugs that match different relevant parts of the query drug response profile. Conclusions The probabilistic modeling-based connectivity mapping method provides a promising alternative to earlier methods. Principled integration of data from different cell lines helps to identify relevant responses for specific drug repositioning applications. PMID:24742351

Optimizing the design of vertical seismic profiling (VSP) for imaging fracture zones over hardrock basement geothermal environments

NASA Astrophysics Data System (ADS)

Reiser, Fabienne; Schmelzbach, Cedric; Maurer, Hansruedi; Greenhalgh, Stewart; Hellwig, Olaf

2017-04-01

A primary focus of geothermal seismic imaging is to map dipping faults and fracture zones that control rock permeability and fluid flow. Vertical seismic profiling (VSP) is therefore a most valuable means to image the immediate surroundings of an existing borehole to guide, for example, the placing of new boreholes to optimize production from known faults and fractures. We simulated 2D and 3D acoustic synthetic seismic data and processed it through to pre-stack depth migration to optimize VSP survey layouts for mapping moderately to steeply dipping fracture zones within possible basement geothermal reservoirs. Our VSP survey optimization procedure for sequentially selecting source locations to define the area where source points are best located for optimal imaging makes use of a cross-correlation statistic, by which a subset of migrated shot gathers is compared with a target or reference image from a comprehensive set of source gathers. In geothermal exploration at established sites, it is reasonable to assume that sufficient à priori information is available to construct such a target image. We generally obtained good results with a relatively small number of optimally chosen source positions distributed over an ideal source location area for different fracture zone scenarios (different dips, azimuths, and distances from the surveying borehole). Adding further sources outside the optimal source area did not necessarily improve the results, but rather resulted in image distortions. It was found that fracture zones located at borehole-receiver depths and laterally offset from the borehole by 300 m can be imaged reliably for a range of the different dips, but more source positions and large offsets between sources and the borehole are required for imaging steeply dipping interfaces. When such features cross-cut the borehole, they are particularly difficult to image. For fracture zones with different azimuths, 3D effects are observed. Far offset source positions contribute less to the image quality as fracture zone azimuth increases. Our optimization methodology is best suited for designing future field surveys with a favorable benefit-cost ratio in areas with significant à priori knowledge. Moreover, our optimization workflow is valuable for selecting useful subsets of acquired data for optimum target-oriented processing.

Identification of underground mine workings with the use of global positioning system technology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Canty, G.A.; Everett, J.W.; Sharp, M.

1998-12-31

Identification of underground mine workings for well drilling is a difficult task given the limited resources available and lack of reliable information. Relic mine maps of questionable accuracy and difficulty in correlating the subsurface to the surface, make the process of locating wells arduous. With the development of global positioning system (GPS), specific locations on the earth can be identified with the aid of satellites. This technology can be applied to mine workings identification given a few necessary, precursory details. For an abandoned mine treatment project conducted by the University of Oklahoma, in conjunction with the Oklahoma Conservation Commission, amore » Trimble ProXL 8 channel GPS receiver was employed to locate specific points on the surface with respect to a mine map. A 1925 mine map was digitized into AutoCAD version 13 software. Surface features identified on the map, such as mine adits, were located and marked in the field using the GPS receiver. These features were than imported into AutoCAD and referenced with the same points drawn on the map. A rubber sheeting program, Multric, was used to tweak the points so the map features correlated with the surface points. The correlation of these features allowed the map to be geo-referenced with the surface. Specific drilling points were located on the digitized map and assigned a latitude and longitude. The GPS receiver, using real time differential correction, was used to locate these points in the field. This method was assumed to be relatively accurate, to within 5 to 15 feet.« less

Places, Spaces and Memory Traces: Showing Students with Learning Disabilities Ways to Remember Locations and Events on Maps.

ERIC Educational Resources Information Center

Brigham, Frederick J.

This study examined the memory-enhancing effects of elaborative and mnemonic encoding of information presented with maps, compared to more traditional, non-mnemonic maps, on recall of locations of events and information associated with those events by 72 middle school students with learning disabilities. Subjects were presented with map-like…

Using a binary logistic regression method and GIS for evaluating and mapping the groundwater spring potential in the Sultan Mountains (Aksehir, Turkey)

NASA Astrophysics Data System (ADS)

Ozdemir, Adnan

2011-07-01

SummaryThe purpose of this study is to produce a groundwater spring potential map of the Sultan Mountains in central Turkey, based on a logistic regression method within a Geographic Information System (GIS) environment. Using field surveys, the locations of the springs (440 springs) were determined in the study area. In this study, 17 spring-related factors were used in the analysis: geology, relative permeability, land use/land cover, precipitation, elevation, slope, aspect, total curvature, plan curvature, profile curvature, wetness index, stream power index, sediment transport capacity index, distance to drainage, distance to fault, drainage density, and fault density map. The coefficients of the predictor variables were estimated using binary logistic regression analysis and were used to calculate the groundwater spring potential for the entire study area. The accuracy of the final spring potential map was evaluated based on the observed springs. The accuracy of the model was evaluated by calculating the relative operating characteristics. The area value of the relative operating characteristic curve model was found to be 0.82. These results indicate that the model is a good estimator of the spring potential in the study area. The spring potential map shows that the areas of very low, low, moderate and high groundwater spring potential classes are 105.586 km 2 (28.99%), 74.271 km 2 (19.906%), 101.203 km 2 (27.14%), and 90.05 km 2 (24.671%), respectively. The interpretations of the potential map showed that stream power index, relative permeability of lithologies, geology, elevation, aspect, wetness index, plan curvature, and drainage density play major roles in spring occurrence and distribution in the Sultan Mountains. The logistic regression approach has not yet been used to delineate groundwater potential zones. In this study, the logistic regression method was used to locate potential zones for groundwater springs in the Sultan Mountains. The evolved model was found to be in strong agreement with the available groundwater spring test data. Hence, this method can be used routinely in groundwater exploration under favourable conditions.

Mobile Three Frequency Radar as Research Platform for Precipitation Profiling

NASA Astrophysics Data System (ADS)

Schmidt, Walter; Rautiainen, Kimmo; Harri, Ari-Matti

2014-05-01

Precipitation profiling at the frequency bands of Ku, Ka and W bands are becoming increasingly popular in the studies of atmospheric microphysics. Ever since the introduction of Ku / Ka pair of frequencies for the Global Precipitation Measurement mission (GPM) and the success of W band in Cloudsat, the interest in precipitation profiling using these frequencies has increased. The profiling observations will also serve as ground validation instruments for several space missions such as GPM and EarthCARE [1]. In order to get better information to retrieve ice microphysics as well as to enhance sensitivity, we need to move from the standard S- and C-band weather radars to higher frequencies [2]. As was recently shown, the use of multi- frequency profiling yields important additional information compared to single-frequency radar mapping [3]. During the past four years a consortium of research, academic and private industries in Finland has been developing a flexible low-cost mobile three-band radar system for precipitation profiling. The feasibility of the concept is being demonstrated by implementing the Ku- and Ka-band part of the system. The antenna structure with antennas for Ku-, Ka- and W-band is completed allowing the pointing of all three antenna systems into the same direction during an azimuth and elevation scan. Using a freely programmable digital waveform generator and decoding electronics for the received data, the implementation of different wave form generation, compression and decoding schemes and their influence on the radar performance in the different bands can be evaluated and optimized. The modular design allows the connection of different transmitter control and receiver decoding units to any of the three band front-end electronics to evaluate the performance of different approaches in the various bands simultaneously. A real-time analysis software supports the data interpretation and system optimization during field tests. Via mobile internet connection and standard data formats the collected data can be made available for operative use. The mechanical integration on a standard car trailer allows the fast deployment to different locations. References [1] V. Chandrasekar, D. Moisseev, W. Schmidt, K. Rautiainen and A.-M Harri, "Scientific and engineering overview of the three frequency precipitation profiling radar at Helsinki" The 9th International Symposium on Advanced Environmental Monitoring and Modeling Helsinki, 2012. [2] V. Chandrasekar, H. Fukatsu and K. Mubarak, "Global mapping of attenuation at Ku- and Ka-band", IEEE Transactions on Geoscience and Remote Sensing, vol. 41, pp. 2166-2176, 2003 [3] J.Leinonen, D. Moisseev, V. Chandrasekar, J. Koskinen, "Mapping Radar Reflectivity Values of Snowfall Between Frequency Bands", IEEE Transactions on Geoscience and Remote Sensing, vol. 49, no.8, pp. 3047-3058, 2011 doi: 10.1109/TGRS.2011.2117432

BM-Map: Bayesian Mapping of Multireads for Next-Generation Sequencing Data

PubMed Central

Ji, Yuan; Xu, Yanxun; Zhang, Qiong; Tsui, Kam-Wah; Yuan, Yuan; Norris, Clift; Liang, Shoudan; Liang, Han

2011-01-01

Summary Next-generation sequencing (NGS) technology generates millions of short reads, which provide valuable information for various aspects of cellular activities and biological functions. A key step in NGS applications (e.g., RNA-Seq) is to map short reads to correct genomic locations within the source genome. While most reads are mapped to a unique location, a significant proportion of reads align to multiple genomic locations with equal or similar numbers of mismatches; these are called multireads. The ambiguity in mapping the multireads may lead to bias in downstream analyses. Currently, most practitioners discard the multireads in their analysis, resulting in a loss of valuable information, especially for the genes with similar sequences. To refine the read mapping, we develop a Bayesian model that computes the posterior probability of mapping a multiread to each competing location. The probabilities are used for downstream analyses, such as the quantification of gene expression. We show through simulation studies and RNA-Seq analysis of real life data that the Bayesian method yields better mapping than the current leading methods. We provide a C++ program for downloading that is being packaged into a user-friendly software. PMID:21517792

Halo Pressure Profile through the Skew Cross-power Spectrum of the Sunyaev-Zel’dovich Effect and CMB Lensing in Planck

NASA Astrophysics Data System (ADS)

Timmons, Nicholas; Cooray, Asantha; Feng, Chang; Keating, Brian

2017-11-01

We measure the cosmic microwave background (CMB) skewness power spectrum in Planck, using frequency maps of the HFI instrument and the Sunyaev-Zel’dovich (SZ) component map. The two-to-one skewness power spectrum measures the cross-correlation between CMB lensing and the thermal SZ effect. We also directly measure the same cross-correlation using the Planck CMB lensing map and the SZ map and compare it to the cross-correlation derived from the skewness power spectrum. We model fit the SZ power spectrum and CMB lensing-SZ cross-power spectrum via the skewness power spectrum to constrain the gas pressure profile of dark matter halos. The gas pressure profile is compared to existing measurements in the literature including a direct estimate based on the stacking of SZ clusters in Planck.

GPRsurvey as a part of land-use planning in Levi, Finnish Lapland

NASA Astrophysics Data System (ADS)

Kupila, Juho

2010-05-01

The need for detailed information regarding overlying soil layers in townplanning areas has become an important issue, especially in certain areas of Finnish Lapland where the lack of usable soil materials is obvious. Use of ground penetrating radar (GPR) is a fast and cost-effective method of determining the structure of subsurface layers and quantity of soil material above the bedrock surface. This environmental project was carried out by the Geological Survey of Finland together with local enterprises, environmental authorities and an EU structural fund. One of the goals of the project was to use GPR to determine the thickness of soil layers and the differences in material above the bedrock level in certain target areas of the project. The study area is located in the municipality of Kittilä, in the center of the Levi ski resort. The study area (total size of 28 hectares) and surroundings are under fast townplanning and there are, for example, plans for a hotel, apartments and underground garages and service routes, thus it is very important to determine the volume of quarrying. As well, the quality and quantity of existing soil is valid data for the reuse of materials and upcoming construction. One drilling program has already been executed in the area (11 boreholes), so GPR profiles were planned based on this drilling data, soil mapping data and data collected from the townplanning map of the area. According to these earlier drillings and soil mapping, most of the soil in the study area was morainic, so the antenna for the GPR-survey was set at 100 MHz. The positioning method used in this project was VRS-GPS (Virtual Reference Station Global Positioning System), which is a very accurate positioning system to use. Accuracy can be as good as a few centimeters. After the GPR-survey, secondary drilling program was carried out according to the GPR-profiles, thus the total amount of collected data from the planning area was 23 boreholes and 3500 meters of GPR-profiles. In the second phase of the project, all the collected data was used as a reference to build a 3D-model of the planning area. Interpreted GPR-profiles, surface soil map and borehole data formed a database from which an exact model of the study area subsurface was created using GISsoftware. Acquired results show the feasibility of this method to help local actors and authorities in planning and constructing of the area, in present and upcoming projects.

Characterisation of the Subaquatic Groundwater Discharge That Maintains the Permanent Stratification within Lake Kivu; East Africa

PubMed Central

Ross, Kelly Ann; Gashugi, Elisée; Gafasi, Augustin; Wüest, Alfred; Schmid, Martin

2015-01-01

Warm and cold subaquatic groundwater discharge into Lake Kivu forms the large-scale density gradients presently observed in the lake. This structure is pertinent to maintaining the stratification that locks the high volume of gases in the deepwater. Our research presents the first characterisation of these inflows. Temperature and conductivity profiling was conducted from January 2010 to March 2013 to map the locations of groundwater discharge. Water samples were obtained within the lake at the locations of the greatest temperature anomalies observed from the background lake-profile. The isotopic and chemical signatures of the groundwater were applied to assess how these inflows contribute to the overall stratification. It is inferred that Lake Kivu’s deepwater has not been completely recharged by the groundwater inflows since its turnover that is speculated to have occurred within the last ~1000 yrs. Given a recent salinity increase in the lake constrained to within months of seismic activity measured beneath the basin, it is plausible that increased hydrothermal-groundwater inflows into the deep basin are correlated with episodic geologic events. These results invalidate the simple two-component end-member mixing regime that has been postulated up to now, and indicate the importance of monitoring this potentially explosive lake. PMID:25799098

Experimental Study of Boundary Layer Behavior in a Simulated Low Pressure Turbine. Degree awarded by the University of Toledo, May 1998

NASA Technical Reports Server (NTRS)

Shyne, Rickey J.

1998-01-01

A detailed investigation of the flow physics occurring on the suction side of a simulated Low Pressure Turbine (LPT) blade was performed. A contoured upper wall was designed to simulate the pressure distribution of an actual LPT blade onto a flat plate. The experiments were carried out at Reynolds numbers of 100,000 and 250,000 with three levels of freestream turbulence. Freestream turbulence levels ranging from 0.8% to 3% was used in this experiment. Smoke-wire flow visualization data was used to confirm that the boundary layer was separated and formed a bubble. Hot-wires (single and x-wire) and surface mounted hot-film gases and static pressure taps were used to map the flowfield. The transition process over the separated flow region is observed to be similar to a laminar free shear layer flow with the formation of a large coherent eddy structure. For each condition, the locations defining the separation bubble were determined by careful examination of pressure and mean velocity profile data. Transition onset location and length determined from intermittency profiles decrease as freestream turbulence levels increase. Additionally, the length and height of the laminar separation bubbles were observed to be inversely proportional to the levels of freestream turbulence.

High density of structurally controlled, shallow to deep water fluid seep indicators imaged offshore Costa Rica

NASA Astrophysics Data System (ADS)

Kluesner, Jared W.; Silver, Eli A.; Bangs, Nathan L.; McIntosh, Kirk D.; Gibson, James; Orange, Daniel; Ranero, Cesar R.; von Huene, Roland

2013-03-01

We used high-resolution mapping to document 161 sites of potential fluid seepage on the shelf and slope regions where no geophysical seep indicators had been reported. Identified potential seabed seepage sites show both high-backscatter anomalies and bathymetric expressions, such as pockmarks, mounds, and ridges. Almost all identified seabed features are associated with bright spots and flat spots beneath, as mapped within the 3-D seismic grid. We obtained EM122 multi-beam data using closely spaced receiver beams and 4-5 times overlapping multi-beam swaths, which greatly improved the sounding density and geologic resolvability of the data. At least one location shows an acoustic plume in the water column on a 3.5 kHz profile, and this plume is located along a fault trace and above surface and subsurface seepage indicators. Fluid indicators are largely associated with folds and faults within the sediment section, and many of the faults continue into and offset the reflective basement. A dense pattern of normal faults is seen on the outer shelf in the multi-beam bathymetry, backscatter, and 3-D seismic data, and the majority of fluid seepage indicators lie along mapped fault traces. Furthermore, linear mounds, ridges, and pockmark chains are found on the upper, middle, and lower slope regions. The arcuate shape of the shelf edge, projection of the Quepos Ridge, and high density of potential seep sites suggest that this area may be a zone of former seamount/ridge subduction. These results demonstrate a much greater potential seep density and distribution than previously reported across the Costa Rican margin.

Seasonal Characteristics of Tropical Ozone Profiles using the SHADOZ Ozonesonde Data Set: Comparisons with TOMS Tropical Ozone Climatology

NASA Technical Reports Server (NTRS)

Witte, J. C.; Thompson, A. M.; Bhartia, P. K. (Technical Monitor)

2002-01-01

Advances in tropospheric ozone data products being developed for tropical and subtropical regions using TOMS (Total Ozone Mapping Spectrometer) and other satellites are motivating efforts to renew and expand the collection of balloon-borne ozonesonde observations. The SHADOZ (Southern Hemisphere ADditional OZonesondes) project is a web-based archive established since 1998. It's goals are to support validation of TOMS and SBUV (Solar Backscatter UV) satellite ozone measurements and to improve remote sensing techniques for estimating tropical and subtropical ozone. Profile data are taken from balloon-borne ozonesondes, currently at 11 stations coordinating weekly to bi-weekly launches. Station data are publically available at a central location via the internet: . Since the start of the project, the SHADOZ archive has accumulated over 1500 ozonesonde profiles. Data also includes measurements from various SHADOZ supported field campaigns, such as, the Indian Ocean Experiment (INDOEX), Sounding of Ozone and Water in the Equatorial Region (SOWER) and Aerosols99 Atlantic Cruise. Using data from the archive, profile climatologies from selected stations will be shown to 1/characterize the variability of tropospheric tropical ozone among stations, 2/illustrate the seasonal offsets with respect to the tropical profile used in the TOMS v7 algorithm, and 3/estimate the potential error in TOMS retrieval estimates of the tropospheric portion of the atmosphere.

Visualizing flow fields using acoustic Doppler current profilers and the Velocity Mapping Toolbox

USGS Publications Warehouse

Jackson, P. Ryan

2013-01-01

The purpose of this fact sheet is to provide examples of how the U.S. Geological Survey is using acoustic Doppler current profilers for much more than routine discharge measurements. These instruments are capable of mapping complex three-dimensional flow fields within rivers, lakes, and estuaries. Using the Velocity Mapping Toolbox to process the ADCP data allows detailed visualization of the data, providing valuable information for a range of studies and applications.

Airborne gamma-ray spectrometer and magnetometer survey: Concrete quadrangle (Washington). Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1981-01-01

Twenty-five uranium anomalies meet the minimum statistical requirements as defined. These anomalies are tabulated and are shown on the Uranium Anomaly Interpretation Map. Potassium (%K), equivalent Uranium (ppM eU), equivalent Thorium (ppM eT), eU/eT, eU/K, eT/K, and magnetic pseudo-contour maps are presented. Stacked Profiles showing geologic strips maps along each flight-line, together with sensor data, and ancillary data are presented. All maps and profiles were prepared on a scale of 1:250,000, but have been reduced to 1:500,000 for presentation.

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

PubMed Central

Liao, Yang; Smyth, Gordon K.; Shi, Wei

2013-01-01

Read alignment is an ongoing challenge for the analysis of data from sequencing technologies. This article proposes an elegantly simple multi-seed strategy, called seed-and-vote, for mapping reads to a reference genome. The new strategy chooses the mapped genomic location for the read directly from the seeds. It uses a relatively large number of short seeds (called subreads) extracted from each read and allows all the seeds to vote on the optimal location. When the read length is <160 bp, overlapping subreads are used. More conventional alignment algorithms are then used to fill in detailed mismatch and indel information between the subreads that make up the winning voting block. The strategy is fast because the overall genomic location has already been chosen before the detailed alignment is done. It is sensitive because no individual subread is required to map exactly, nor are individual subreads constrained to map close by other subreads. It is accurate because the final location must be supported by several different subreads. The strategy extends easily to find exon junctions, by locating reads that contain sets of subreads mapping to different exons of the same gene. It scales up efficiently for longer reads. PMID:23558742

Neighborhood size of training data influences soil map disaggregation

USDA-ARS?s Scientific Manuscript database

Soil class mapping relies on the ability of sample locations to represent portions of the landscape with similar soil types; however, most digital soil mapping (DSM) approaches intersect sample locations with one raster pixel per covariate layer regardless of pixel size. This approach does not take ...

A bayesian approach for determining velocity and uncertainty estimates from seismic cone penetrometer testing or vertical seismic profiling data

USGS Publications Warehouse

Pidlisecky, Adam; Haines, S.S.

2011-01-01

Conventional processing methods for seismic cone penetrometer data present several shortcomings, most notably the absence of a robust velocity model uncertainty estimate. We propose a new seismic cone penetrometer testing (SCPT) data-processing approach that employs Bayesian methods to map measured data errors into quantitative estimates of model uncertainty. We first calculate travel-time differences for all permutations of seismic trace pairs. That is, we cross-correlate each trace at each measurement location with every trace at every other measurement location to determine travel-time differences that are not biased by the choice of any particular reference trace and to thoroughly characterize data error. We calculate a forward operator that accounts for the different ray paths for each measurement location, including refraction at layer boundaries. We then use a Bayesian inversion scheme to obtain the most likely slowness (the reciprocal of velocity) and a distribution of probable slowness values for each model layer. The result is a velocity model that is based on correct ray paths, with uncertainty bounds that are based on the data error. ?? NRC Research Press 2011.

The dorsal stream contribution to phonological retrieval in object naming

PubMed Central

Faseyitan, Olufunsho; Kim, Junghoon; Coslett, H. Branch

2012-01-01

Meaningful speech, as exemplified in object naming, calls on knowledge of the mappings between word meanings and phonological forms. Phonological errors in naming (e.g. GHOST named as ‘goath’) are commonly seen in persisting post-stroke aphasia and are thought to signal impairment in retrieval of phonological form information. We performed a voxel-based lesion-symptom mapping analysis of 1718 phonological naming errors collected from 106 individuals with diverse profiles of aphasia. Voxels in which lesion status correlated with phonological error rates localized to dorsal stream areas, in keeping with classical and contemporary brain-language models. Within the dorsal stream, the critical voxels were concentrated in premotor cortex, pre- and postcentral gyri and supramarginal gyrus with minimal extension into auditory-related posterior temporal and temporo-parietal cortices. This challenges the popular notion that error-free phonological retrieval requires guidance from sensory traces stored in posterior auditory regions and points instead to sensory-motor processes located further anterior in the dorsal stream. In a separate analysis, we compared the lesion maps for phonological and semantic errors and determined that there was no spatial overlap, demonstrating that the brain segregates phonological and semantic retrieval operations in word production. PMID:23171662

Ion Trapping with Fast-Response Ion-Selective Microelectrodes Enhances Detection of Extracellular Ion Channel Gradients

PubMed Central

Messerli, Mark A.; Collis, Leon P.; Smith, Peter J.S.

2009-01-01

Previously, functional mapping of channels has been achieved by measuring the passage of net charge and of specific ions with electrophysiological and intracellular fluorescence imaging techniques. However, functional mapping of ion channels using extracellular ion-selective microelectrodes has distinct advantages over the former methods. We have developed this method through measurement of extracellular K+ gradients caused by efflux through Ca2+-activated K+ channels expressed in Chinese hamster ovary cells. We report that electrodes constructed with short columns of a mechanically stable K+-selective liquid membrane respond quickly and measure changes in local [K+] consistent with a diffusion model. When used in close proximity to the plasma membrane (<4 μm), the ISMs pose a barrier to simple diffusion, creating an ion trap. The ion trap amplifies the local change in [K+] without dramatically changing the rise or fall time of the [K+] profile. Measurement of extracellular K+ gradients from activated rSlo channels shows that rapid events, 10–55 ms, can be characterized. This method provides a noninvasive means for functional mapping of channel location and density as well as for characterizing the properties of ion channels in the plasma membrane. PMID:19217875

Mutation spectrum in BBS genes guided by homozygosity mapping in an Indian cohort.

PubMed

Sathya Priya, C; Sen, P; Umashankar, V; Gupta, N; Kabra, M; Kumaramanickavel, G; Stoetzel, C; Dollfus, H; Sripriya, S

2015-02-01

Bardet-Biedl syndrome (BBS), a ciliopathy disorder with pleiotropic effect manifests primarily as retinal degeneration along with renal insufficiency, polydactyly and obesity. In this study, we have performed homozygosity mapping using NspI 250K affymetrix gene chip followed by mutation screening of the candidate genes located in the homozygous blocks. These regions are prioritized based on the block length and candidature of the genes in BBS and other ciliopathies. Gene alterations in known BBS (22) and other ciliopathy genes such as ALMS1 (2) were seen in 24 of 30 families (80%). Mutations in BBS3 gene, inclusive of a novel recurrent mutation (p.I91T) accounted for 18% of the identified variations. Disease associated polymorphisms p.S70N (BBS2), rs1545 and rs1547 (BBS6) were also observed. This is the first study in Indian BBS patients and homozygosity mapping has proved to be an effective tool in prioritizing the candidate genes in consanguineous pedigrees. The study reveals a different mutation profile in the ciliopathy genes in Indian population and implication of novel loci/genes in 20% of the study group. © 2014 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Characterizing polymorphic inversions in human genomes by single-cell sequencing

PubMed Central

Sanders, Ashley D.; Hills, Mark; Porubský, David; Guryev, Victor; Falconer, Ester; Lansdorp, Peter M.

2016-01-01

Identifying genomic features that differ between individuals and cells can help uncover the functional variants that drive phenotypes and disease susceptibilities. For this, single-cell studies are paramount, as it becomes increasingly clear that the contribution of rare but functional cellular subpopulations is important for disease prognosis, management, and progression. Until now, studying these associations has been challenged by our inability to map structural rearrangements accurately and comprehensively. To overcome this, we coupled single-cell sequencing of DNA template strands (Strand-seq) with custom analysis software to rapidly discover, map, and genotype genomic rearrangements at high resolution. This allowed us to explore the distribution and frequency of inversions in a heterogeneous cell population, identify several polymorphic domains in complex regions of the genome, and locate rare alleles in the reference assembly. We then mapped the entire genomic complement of inversions within two unrelated individuals to characterize their distinct inversion profiles and built a nonredundant global reference of structural rearrangements in the human genome. The work described here provides a powerful new framework to study structural variation and genomic heterogeneity in single-cell samples, whether from individuals for population studies or tissue types for biomarker discovery. PMID:27472961

3000 Mile Laser Altimeter Profile Across Northern Hemisphere of Mars

NASA Technical Reports Server (NTRS)

1997-01-01

Topographic profile across the northern hemisphere of Mars from the Mars Orbiter Laser Altimeter (MOLA). The profile was obtained during the Mars Global Surveyor Capture Orbit Calibration Pass on September 15, 1997 and represents 20 minutes of data collection. The profile has a length of approximately 3000 miles (5000 kilometers). The large bulge is the western part of the Elysium rise, the second largest volcanic province on Mars, and shows over 3 miles (5 kilometers) of vertical relief. This area contains deep chasms that reflect tectonic, volcanic and erosional processes. In contrast is the almost 1featureless1 northern plains region of Mars, which shows only hundreds of meters of relief at scales the size of the United States. Plotted for comparison is the elevation of the Viking Lander 2 site, which is located 275 miles (445 kilometers) west of the profile. At the southernmost extent of the trace is the transition from the northern plains to the ancient southern highlands. Characterizing the fine-scale nature of topography in this chaotic region is crucial to testing theories for how the dichotomy between the geologically distinctive northern lowlands and southern uplands formed and subsequently evolved. The spatial resolution of the profile is approximately 1000 feet (330 meters) and the vertical resolution is approximately 3 feet (1 meter). When the Mars Global Surveyor mapping mission commences in March, 1998, the MOLA instrument will collect 72 times as much data every day for a period of two years.

Automated cell-type classification in intact tissues by single-cell molecular profiling

PubMed Central

2018-01-01

A major challenge in biology is identifying distinct cell classes and mapping their interactions in vivo. Tissue-dissociative technologies enable deep single cell molecular profiling but do not provide spatial information. We developed a proximity ligation in situ hybridization technology (PLISH) with exceptional signal strength, specificity, and sensitivity in tissue. Multiplexed data sets can be acquired using barcoded probes and rapid label-image-erase cycles, with automated calculation of single cell profiles, enabling clustering and anatomical re-mapping of cells. We apply PLISH to expression profile ~2900 cells in intact mouse lung, which identifies and localizes known cell types, including rare ones. Unsupervised classification of the cells indicates differential expression of ‘housekeeping’ genes between cell types, and re-mapping of two sub-classes of Club cells highlights their segregated spatial domains in terminal airways. By enabling single cell profiling of various RNA species in situ, PLISH can impact many areas of basic and medical research. PMID:29319504

Surficial geology of Panther Lake Quadrangle, Oswego County, New York

USGS Publications Warehouse

Miller, Todd S.

1981-01-01

The location and extent of eight kinds of surficial deposits in Panther Lake quadrangle, Oswego County, N.Y., are mapped on a 7.5-minute U.S. Geological Survey topographic map. The map was compiled to indicate the lithology and potential for groundwater development at any specific location. (USGS)

Using JournalMap to link spatial information with ecological site descriptions

USDA-ARS?s Scientific Manuscript database

JournalMap is a scientific literature search engine that empowers you to find relevant research based on location and biophysical variables as well as traditional keyword searches. All publications are geotagged based on reported location information and plotted on a world map showing where the rese...

Mapping of Ozone on Mars at Infrared Wavelengths Using Crires at VLT

NASA Astrophysics Data System (ADS)

Radeva, Y. L.; Mumma, M. J.; Villanueva, G.; Novak, R.; Hartogh, P.; Encrenaz, T.; Kaufl, H.; Smette, A.

2010-12-01

We present spatially resolved maps of ozone and water on Mars, acquired on 21 August 2009 using the ultra-high resolution infrared spectrometer CRIRES at ESO’s VLT (Paranal, Chile). On Mars, the season was mid-summer in the South (Ls = 325) and the latitudinal resolution was 10 degrees FWHM at disk center. Ozone is produced by recombination of photochemically produced O and O2. It is destroyed by UV photolysis (with O2 (a1Dg) as a principal product) but also by reaction with odd hydrogen species (especially, H - a product of H2O vapor photolysis). Thus, simultaneous measurements of water and ozone can test this relationship. We quantified ozone using spectral lines (near 1.27 mm) of O2 (a1Dg). The emission from O2 (a1Dg) serves as a tracer for O3 above 20 km, since at lower altitudes collisions with CO2 quench the excited O2 (a1Dg) molecules. We confirmed the vertical location of the O2 (a1Dg) emission by extracting rotational temperatures from line-by-line ratios, and comparing them with standard vertical temperature profiles for this season and location(s). On the same night, we also obtained 2-D (lat-long) maps of Martian water from multiple H2O lines detected in the 3.3 mm region. We compare our retrieved distributions for ozone (latitude and altitude) with predictions of Lefevre et al. [I] based on their comprehensive 3-D circulation and photochemical model for the Martian atmosphere. Acknowledgements: This work was funded by NASA’s R&A Programs in Astrobiology (344-53-51), Planetary Astronomy (344-32-51-96), and Planetary Atmospheres (NNX09AB65G). We gratefully acknowledge the Director and staff of the European Southern Observatory, for supporting these observations. References: [I] Lefevre et al. (2004), J. of Geophys. Res. 109, E07004

The siting of a prison complex above an abandoned underground coal mine

DOE Office of Scientific and Technical Information (OSTI.GOV)

Marino, G.G.

1997-12-31

This paper discusses in detail the process undertaken to mitigate the effects of any future mine subsidence on prison structures proposed above old abandoned underground workings. The site for a proposed prison complex purchased by the State of Indiana was located in west-central Indiana and was undermined by an old abandoned room and pillar mine. The original plan for construction consisted of one phase. Based on a study of the mine map and subsurface verification of the extent of mining it was determined that all prison buildings and important structures could be placed above solid coal to the north. Onemore » masonry building, however, was located within the potential draw zone of mine works which still contained significant mine voids. Based on empirical data the subsidence potential was estimated and the building was accordingly designed to be mine subsidence resistant. It was decided that a phase two prison complex should be constructed adjacent to and just south of the Phase I complex. This complex would be directly above the underground workings. The first stage of design was to minimize subsidence potential by positioning the exposure of significant structures to the subjacent mining assuming the mine map was sufficiently accurate. Subsequently, an extensive subsurface investigation program was then undertaken to: (1) ascertain whether or not mine areas where buildings would be located were already collapsed and thus only nominal, if any, subsidence could occur in the future; and (2) verify the presence of solid coal areas within the mine as indicated on the mine map. Based on all the site information gathered subsidence profiles were developed from an empirical data base of subsidence events in the Illinois Coal Basin. As a result of this work many structures on the site required no or nominal subsidence considerations.« less

Myocardial infarction size and location: a comparative study of epicardial isopotential mapping, thallium-201 scintigraphy, electrocardiography and vectorcardiography

DOE Office of Scientific and Technical Information (OSTI.GOV)

Toyama, S.; Suzuki, K.; Takahashi, T.

1987-07-01

Based on epicardial isopotential mapping (the Ep Map), which was calculated from body surface isopotential mapping (the Body Map) with Yamashita's method, using the finite element technique, we predicted the location and size of the abnormal depolarized area (the infarcted area) in 19 clinical cases of anterior and 18 cases of inferoposterior infarction. The prediction was done using Toyama's diagnostic method, previously reported. The accuracy of the prediction by the Ep Map was assessed by comparing it with findings from thallium-201 scintigraphy (SCG), electrocardiography (ECG) and vectorcardiography (VCG). In all cases of anterior infarction, the location of the abnormal depolarizedmore » areas determined on the Ep Map, which was localized at the anterior wall along the anterior intraventricular septum, agreed with the location of the abnormal findings obtained by SCG, ECG and VCG. For all inferoposterior infarction cases, the abnormal depolarized areas were localized at the posterior wall and the location also coincided with that of the abnormal findings obtained by SCG, ECG and VCG. Furthermore, we ranked and ordered the size of the abnormal depolarized areas, which were predicted by the Ep Map for both anterior and inferoposterior infarction cases. In the cases of anterior infarction, the order of the size of the abnormal depolarized area by the Ep Map was correlated to the size of the abnormal findings by SCG, as well as to the results from Selvester's QRS scoring system in ECG and to the angle of the maximum QRS vector in the horizontal plane in VCG.« less

An Alternative Retrieval Algorithm for the Ozone Mapping and Profiler Suite Limb Profiler

DTIC Science & Technology

2012-05-01

behavior of aerosol extinction from the upper troposphere through the stratosphere is critical for retrieving ozone in this region. Aerosol scattering is......include area code) b. ABSTRACT c. THIS PAGE 18. NUMBER OF PAGES 17. LIMITATION OF ABSTRACT An Alternative Retrieval Algorithm for the Ozone Mapping and

Halo Pressure Profile through the Skew Cross-power Spectrum of the Sunyaev–Zel’dovich Effect and CMB Lensing in Planck

DOE Office of Scientific and Technical Information (OSTI.GOV)

Timmons, Nicholas; Cooray, Asantha; Feng, Chang

2017-11-01

We measure the cosmic microwave background (CMB) skewness power spectrum in Planck , using frequency maps of the HFI instrument and the Sunyaev–Zel’dovich (SZ) component map. The two-to-one skewness power spectrum measures the cross-correlation between CMB lensing and the thermal SZ effect. We also directly measure the same cross-correlation using the Planck CMB lensing map and the SZ map and compare it to the cross-correlation derived from the skewness power spectrum. We model fit the SZ power spectrum and CMB lensing–SZ cross-power spectrum via the skewness power spectrum to constrain the gas pressure profile of dark matter halos. The gasmore » pressure profile is compared to existing measurements in the literature including a direct estimate based on the stacking of SZ clusters in Planck .« less

Development of a NEHRP site classification map of Chiang Mai city, Thailand, based on shear-wave velocity using the MASW technique

NASA Astrophysics Data System (ADS)

Thitimakorn, Thanop

2013-08-01

To account for site amplification and seismic hazard mapping, the shear-wave velocity (Vs) profile to a depth of 30 m (Vs (30)) is an important parameter and can be used to calculate the ground motion for specific site conditions. In this study, the near-surface Vs profiles of soils were collected at 44 sites in Chiang Mai city using the multi-channel analysis of surface-wave technique. The Vs of each tested location was average weighted to Vs (30) based on the National Earthquake Hazards Reduction Program (NEHRP) criteria. The average Vs (30) value of the alluvium soils was about 362 m s-1, which falls between NEHRP site classes C and D. The average Vs (30) values of flood plain, fluvial clay and natural levee soils (at 300, 299 and 311 m s-1, respectively) all equated to NEHRP class D. The colluvial deposits in the north-western part of the city were mainly composed of gravel, coarse sand and rock fragments, and were assigned to class C (average Vs (30) of 412 m s-1). Soils with lower Vs values will experience higher earthquake ground shaking than those of the bedrock. Accordingly the major part of Chiang Mai city may experience substantial ground shaking due to the amplification in the soft soils.

Integration of magnetometric, gpr and geoelectric measurements applied to the study of the new Viggiano archaeological site (Southern Italy).

NASA Astrophysics Data System (ADS)

Rizzo, E.; Chianese, D.; Lapenna, V.; Piscitelli, S.

2003-04-01

In the frame of a collaboration with the Archaeological Superintendence of the Basilicata Region (Southern Italy), the Geophysical Lab of IMAA-CNR planned a multidisciplinary investigation in the archaeological site of Viggiano, integrating magnetic mapping, Ground Penetrating Radar profiling and 3D electrical resistivity imaging. The archaeological site, located in Agri Valley (Southern Italy, Basilicata), is an ancient structure developed in successive phases between IV and III century B.C. In this area during some shovel tests archaeological remnants have been identified in the western part. Successively the archaeologists hypothesized the presence of buried structures in the eastern part too, where we performed a geophysical survey. In particular, a magnetic map by means of a caesium vapour magnetometer G-858 GEOMETRICS has been carried to find the external perimeter; more than 50 Georadar profiles using SIR 2000 instrument have been performed to delineate the internal buried structures and the electrical resistivity method has been applied to estimate the depth of buried structures. According to the archaeological hypothesis significant wall structures have been identified in the eastern part. In conclusion, the integration of different geophysical techniques allows us to obtain very intriguing information about the shape, the dimension and the depth of the oriental buried wall structures giving a contribute to better develop a new hypothesis about the history of the archaeological site of Viggiano.

Observing gas in Cosmic Web filaments to constrain simulations of cosmic structure formation

NASA Astrophysics Data System (ADS)

Wakker, Bart

2016-10-01

Cosmological simulations predict that dark matter and baryons condense into multi-Mpc filamentary structures, making up the Cosmic Web. This is outlined by dark matter halos, inside which 10% of baryons are concentrated to make stars in galaxies. The other 90% of the baryons remain gaseous, with about half located outside galaxy halos. They can be traced by Lyman alpha absorbers, whose HI column density is determined by a combination of gas density and the intensity of the extragalactic ionizing background (EGB). About 1000 HST orbits have been expended to map the 50% of baryons in galaxy halos. This contrasts with 37 orbits explicitly allocated to map the other 50% (our Cycle 18 program to observe 17 AGN projected onto a single filament at cz 3500 km/s). We propose a 68-orbit program to observe 40 AGN, creating a sample of 56 sightlines covering a second filament at cz 2500 km/s. Using this dataset we will do the following: (1) measure the intensity of the EGB to within about 50%; (2) confirm that the linewidth of Lya absorbers increases near the filament axis, suggesting increasing temperature or turbulence; (3) check our earlier finding that simulations predict a transverse density HI profile (which scales with the dark-matter profile) that is much broader than is indicated by the observations.

Using high-resolution multibeam bathymetry to identify seafloor surface rupture along the Palos Verdes fault complex in offshore Southern California

USGS Publications Warehouse

Marlow, M. S.; Gardner, J.V.; Normark, W.R.

2000-01-01

Recently acquired high-resolution multibeam bathymetric data reveal several linear traces that are the surficial expressions of seafloor rupture of Holocene faults on the upper continental slope southeast of the Palos Verdes Peninsula. High-resolution multichannel and boomer seismic-reflection profiles show that these linear ruptures are the surficial expressions of Holocene faults with vertical to steep dips. The most prominent fault on the multibeam bathymetry is about 10 km to the west of the mapped trace of the Palos Verdes fault and extends for at least 14 km between the shelf edge and the base of the continental slope. This fault is informally called the Avalon Knoll fault for the nearby geographic feature of that name. Seismic-reflection profiles show that the Avalon Knoll fault is part of a northwest-trending complex of faults and anticlinal uplifts that are evident as scarps and bathymetric highs on the multibeam bathymetry. This fault complex may extend onshore and contribute to the missing balance of Quaternary uplift determined for the Palos Verdes Hills and not accounted for by vertical uplift along the onshore Palos Verdes fault. We investigate the extent of the newly located offshore Avalon Knoll fault and use this mapped fault length to estimate likely minimum magnitudes for events along this fault.

Absence of rotational activity detected using 2-dimensional phase mapping in the corresponding 3-dimensional phase maps in human persistent atrial fibrillation.

PubMed

Pathik, Bhupesh; Kalman, Jonathan M; Walters, Tomos; Kuklik, Pawel; Zhao, Jichao; Madry, Andrew; Sanders, Prashanthan; Kistler, Peter M; Lee, Geoffrey

2018-02-01

Current phase mapping systems for atrial fibrillation create 2-dimensional (2D) maps. This process may affect the accurate detection of rotors. We developed a 3-dimensional (3D) phase mapping technique that uses the 3D locations of basket electrodes to project phase onto patient-specific left atrial 3D surface anatomy. We sought to determine whether rotors detected in 2D phase maps were present at the corresponding time segments and anatomical locations in 3D phase maps. One-minute left atrial atrial fibrillation recordings were obtained in 14 patients using the basket catheter and analyzed off-line. Using the same phase values, 2D and 3D phase maps were created. Analysis involved determining the dominant propagation patterns in 2D phase maps and evaluating the presence of rotors detected in 2D phase maps in the corresponding 3D phase maps. Using 2D phase mapping, the dominant propagation pattern was single wavefront (36.6%) followed by focal activation (34.0%), disorganized activity (23.7%), rotors (3.3%), and multiple wavefronts (2.4%). Ten transient rotors were observed in 9 of 14 patients (64%). The mean rotor duration was 1.1 ± 0.7 seconds. None of the 10 rotors observed in 2D phase maps were seen at the corresponding time segments and anatomical locations in 3D phase maps; 4 of 10 corresponded with single wavefronts in 3D phase maps, 2 of 10 with 2 simultaneous wavefronts, 1 of 10 with disorganized activity, and in 3 of 10 there was no coverage by the basket catheter at the corresponding 3D anatomical location. Rotors detected in 2D phase maps were not observed in the corresponding 3D phase maps. These findings may have implications for current systems that use 2D phase mapping. Copyright © 2017 Heart Rhythm Society. Published by Elsevier Inc. All rights reserved.

Recombination patterns reveal information about centromere location on linkage maps.

PubMed

Limborg, Morten T; McKinney, Garrett J; Seeb, Lisa W; Seeb, James E

2016-05-01

Linkage mapping is often used to identify genes associated with phenotypic traits and for aiding genome assemblies. Still, many emerging maps do not locate centromeres - an essential component of the genomic landscape. Here, we demonstrate that for genomes with strong chiasma interference, approximate centromere placement is possible by phasing the same data used to generate linkage maps. Assuming one obligate crossover per chromosome arm, information about centromere location can be revealed by tracking the accumulated recombination frequency along linkage groups, similar to half-tetrad analyses. We validate the method on a linkage map for sockeye salmon (Oncorhynchus nerka) with known centromeric regions. Further tests suggest that the method will work well in other salmonids and other eukaryotes. However, the method performed weakly when applied to a male linkage map (rainbow trout; O. mykiss) characterized by low and unevenly distributed recombination - a general feature of male meiosis in many species. Further, a high frequency of double crossovers along chromosome arms in barley reduced resolution for locating centromeric regions on most linkage groups. Despite these limitations, our method should work well for high-density maps in species with strong recombination interference and will enrich many existing and future mapping resources. © 2015 The Authors. Molecular Ecology Resources published by John Wiley & Sons Ltd.

Airborne Lidar Measurements of Aerosol Optical Properties During SAFARI-2000

NASA Technical Reports Server (NTRS)

McGill, M. J.; Hlavka, D. L.; Hart, W. D.; Welton, E. J.; Campbell, J. R.; Starr, David OC. (Technical Monitor)

2002-01-01

The Cloud Physics Lidar (CPL) operated onboard the NASA ER-2 high altitude aircraft during the SAFARI-2000 field campaign. The CPL provided high spatial resolution measurements of aerosol optical properties at both 1064 nm and 532 nm. We present here results of planetary boundary layer (PBL) aerosol optical depth analysis and profiles of aerosol extinction. Variation of optical depth and extinction are examined as a function of regional location. The wide-scale aerosol mapping obtained by the CPL is a unique data set that will aid in future studies of aerosol transport. Comparisons between the airborne CPL and ground-based MicroPulse Lidar Network (MPL-Net) sites are shown to have good agreement.

Jupiter: New estimates of mean zonal flow at the cloud level

NASA Technical Reports Server (NTRS)

Limaye, Sanjay S.

1986-01-01

In order to reexamine the magnitude differences of the Jovian atmosphere's jets, as determined by Voyager 1 and 2 images, a novel approach is used to ascertain the zonal mean east-west component of motion. This technique is based on digital pattern matching, and is applied on pairs of mapped images to yield a profile of the mean zonal component that reproduces the exact locations of the easterly and westerly jets between + and 60 deg latitude. Results were obtained for all of the Voyager 1 and 2 cylindrical mosaics; the correlation coefficient between Voyagers 1 and 2 in mean zonal flow between + and - 60 deg latitude, determined from violet filter mosaics, is 0.998.

Propagation and Signal Modeling

NASA Astrophysics Data System (ADS)

Jensen, Finn B.

The use of sound in the sea is ubiquitous: Apart from the military aspect of trying to detect an adversary’s mines and submarines, ship-mounted sonars measure water depth, ship speed, and the presence of fish shoals. Side-scan systems are used for mapping the bottom topography, sub-bottom profilers for getting information about the deeper layering, and other sonar systems for locating pipelines and cables on the seafloor. Sound is also used for navigating submerged vehicles, for underwater communications and for tracking marine mammals. Finally, in the realm of ‘acoustical oceanography’ and ‘ocean acoustic tomography,’ sound is used for measuring physical parameters of the ocean environment and for monitoring oceanic processes [1-6].

Two-dimensional and three-dimensional dynamic imaging of live biofilms in a microchannel by time-of-flight secondary ion mass spectrometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hua, Xin; Marshall, Matthew J.; Xiong, Yijia

2015-05-01

A vacuum compatible microfluidic reactor, SALVI (System for Analysis at the Liquid Vacuum Interface) was employed for in situ chemical imaging of live biofilms using time-of-flight secondary ion mass spectrometry (ToF-SIMS). Depth profiling by sputtering materials in sequential layers resulted in live biofilm spatial chemical mapping. 2D images were reconstructed to report the first 3D images of hydrated biofilm elucidating spatial and chemical heterogeneity. 2D image principal component analysis (PCA) was conducted among biofilms at different locations in the microchannel. Our approach directly visualized spatial and chemical heterogeneity within the living biofilm by dynamic liquid ToF-SIMS.

Combination of AUV high resolution mapping and submersible visual observations on the Guaymas Hydrothermal Fields (Southern Trough Ridge)

NASA Astrophysics Data System (ADS)

Ondreas, H.; Fouquet, Y.; Normand, A.; Rouxel, O.; Godfroy, A.

2011-12-01

The BIG cruise -leg I- was carried out on the Guaymas basin in June 2010 on board the French research vessel L'Atalante. An AUV high-resolution survey was made on the southern trough ridge to gather fine-scale bathymetry and acoustic imagery data. The results of the high resolution survey were used, the next days, to explore the vent's area during several Nautile dives. The southern trough hydrothermal fields of the Guaymas basin have often been studied. However, the local geological context was not really well-defined. During the AUV surveys, maps at 70 m above the seafloor were done over the hydrothermal area. The data were gridded at 2 m spacing. During the same cruise, Nautile dives help us to compare the field observations and the geological features revealed by the high resolution mapping and to investigate the fine-scale relationships between the vents and their geological environment. Integration of these data is made easier by the use of the GIS software technology. It helps us perpetuate data, undertake comparisons, combine different types of data, realize fine-scale geological mapping. Even if some problems are recurrent (precision of positioning, integration of old data...), such combinations of high resolution mapping and visual observations and sampling have changed our vision of hydrothermal geological context. In the Guaymas sedimented spreading axis, our new data show that major hydrothermal sites, in the south part of the southern trough only, are located inside or at the border of 100 to 250 m long, 60 to 150 m wide, 6 to 12 m deep small collapsed sub-circular depressions. The direction of the collapse is variable. Curved faults at the outer border of these depressions control the largest and mature edifices. Smaller, possibly younger, immature chimneys are located at the centre of some depressions. The mature hydrothermal structures appear as mounds up to 80 m in diameter, 20 m in high, each hydrothermal edifice being very-well identified on the 2 m resolution map. Classical high temperature chimneys are present but also areas of high temperature fluids percolating through the petroleum-rich sediment. Echosounder profiles, realized near the bottom with the AUV, show the root of some hydrothermal edifice 40 m down in the sediment and their link with the small depressions. The profiles also show normal faults buried in the sediment and the collapsed depression controlling the hydrothermal edifices. The bordering curved-faults appear as superficial features. To explain the local features seen on high resolution data, we propose a succession of process: i) collapse related to deep recent fissuration in the volcanic basement, ii) discharge controlled along the border of the sub-circular collapse structures and starting of chimneys construction, iii) maturation of the external edifices and collapse of the depression enhanced by mobilisation of sediment out of the depression by fluid discharge.

Reconstruction of an SSR-based Magnaporthe oryzae physical map to locate avirulence gene AvrPi12.

PubMed

Li, Tonghui; Wen, Jianqiang; Zhang, Yaling; Correll, James; Wang, Ling; Pan, Qinghua

2018-05-31

Pathogen avirulence (Avr) genes can evolve rapidly when challenged by the widespread deployment of host genes for resistance. They can be effectively isolated by positional cloning provided a robust and well-populated genetic map is available. An updated, SSR-based physical map of the rice blast pathogen Magnaporthe oryzae (Mo) has been constructed based on 116 of the 120 SSRs used to assemble the last map, along with 18 newly developed ones. A comparison between the two versions of the map has revealed an altered marker content and order within most of the Mo chromosomes. The avirulence gene AvrPi12 was mapped in a population of 219 progeny derived from a cross between the two Mo isolates CHL42 and CHL357. A bulked segregant analysis indicated that the gene was located on chromosome 6, a conclusion borne out by an analysis of the pattern of segregation shown by individual isolates. Six additional PCR-based markers were developed to improve the map resolution in the key region. AvrPi12 was finally located within the sub-telomeric region of chromosome 6, distal to the SSR locus LSM6-5. The improved SSR-based linkage map should be useful as a platform for gene mapping and isolation in Mo. It was used to establish the location of AvrPi12, thereby providing a starting point for its positional cloning.

Phase mapping of radionuclide gated biventriculograms in patients with sustained ventricular tachycardia or Wolff-Parkinson-White syndrome

DOE Office of Scientific and Technical Information (OSTI.GOV)

Le Guludec, D.; Bourguignon, M.; Sebag, C.

1987-01-01

Accuracy of Fourier phase mapping of radionuclide gated biventriculograms in detecting the origin of abnormal ventricular activation was studied during ventricular tachycardia or preexcitation. Group I included six patients suffering from clinical recurrent VT; 3 gated blood pool studies were acquired for each patient: during sinus rhythm, right ventricular pacing, and induced sustained VT-Group II included seven patients with Wolff-Parkinson-White syndrome and recurrent paroxysmal tachycardia; 3 gated blood pool studies were acquired for each patient: during sinus rhythm, right atrial pacing and orthodromic reciprocating tachycardia. Each acquisition lasted 5 min, in 30 degrees-40 degrees left anterior oblique projection. In Groupmore » I, the Fourier phase mapping was consistent with QRS morphology and axis during VT (5/6), except in one patient with LV aneurysm and LBBB electrical pattern during VT. Origin of VT on phase mapping was located in the right ventricle (n = 2) or in left ventricle (n = 4), at the border of wall motion abnormalities each time they existed (5/6). In Group II, the phase advance correlated with the location of the accessory pathway determined by ECG and endocardial mapping (n = 6) and per-operative epicardial mapping (n = 1). Discrimination between anterior and posterior localization of paraseptal pathways and location of intermittent preexcitation was not possible. We conclude that Fourier phase mapping is an accurate method for locating the origin of VT and determining its etiology. It can help locate the site of ventricular preexcitation in patients with only one accessory pathway; its accuracy in locating multiple accessory pathways remains unknown.« less

30 CFR 783.25 - Cross sections, maps, and plans.

Code of Federal Regulations, 2014 CFR

2014-07-01

...) Elevations and locations of monitoring stations used to gather data on water quality and quantity, fish and... aquifers on cross-sections and contour maps; (7) Location of surface water bodies such as streams, lakes... permit area; (9) Location and dimensions of existing areas of spoil, waste, coal development waste, and...

30 CFR 783.25 - Cross sections, maps, and plans.

Code of Federal Regulations, 2011 CFR

2011-07-01

...) Elevations and locations of monitoring stations used to gather data on water quality and quantity, fish and... aquifers on cross-sections and contour maps; (7) Location of surface water bodies such as streams, lakes... permit area; (9) Location and dimensions of existing areas of spoil, waste, coal development waste, and...

30 CFR 783.25 - Cross sections, maps, and plans.

Code of Federal Regulations, 2010 CFR

2010-07-01

...) Elevations and locations of monitoring stations used to gather data on water quality and quantity, fish and... aquifers on cross-sections and contour maps; (7) Location of surface water bodies such as streams, lakes... permit area; (9) Location and dimensions of existing areas of spoil, waste, coal development waste, and...

30 CFR 783.25 - Cross sections, maps, and plans.

Code of Federal Regulations, 2012 CFR

2012-07-01

...) Elevations and locations of monitoring stations used to gather data on water quality and quantity, fish and... aquifers on cross-sections and contour maps; (7) Location of surface water bodies such as streams, lakes... permit area; (9) Location and dimensions of existing areas of spoil, waste, coal development waste, and...

30 CFR 783.25 - Cross sections, maps, and plans.

Code of Federal Regulations, 2013 CFR

2013-07-01

...) Elevations and locations of monitoring stations used to gather data on water quality and quantity, fish and... aquifers on cross-sections and contour maps; (7) Location of surface water bodies such as streams, lakes... permit area; (9) Location and dimensions of existing areas of spoil, waste, coal development waste, and...

RAMP: a computer system for mapping regional areas

Treesearch

Bradley B. Nickey

1975-01-01

Until 1972, the U.S. Forest Service's Individual Fire Reports recorded locations by the section-township-range system..These earlier fire reports, therefore, lacked congruent locations. RAMP (Regional Area Mapping Procedure) was designed to make the reports more useful for quantitative analysis. This computer-based technique converts locations expressed in...

Surficial geology of part of Worth Center Quadrangle, Oswego County, New York

USGS Publications Warehouse

Miller, Todd S.

1980-01-01

The location and extent of six kinds of surficial deposits in part of Worth Center quadrangle, Oswego County, N.Y., are mapped on a 7.5-minute U.S. Geological Survey topographic map. The map was compiled to indicate the lithology and potential for groundwater development at any specific location. (USGS)

Surficial geology of Hannibal Quadrangle, Oswego County, New York

USGS Publications Warehouse

Miller, Todd S.

1981-01-01

The location and extent of 10 kinds of surficial deposits in part of Hannibal quadrangle, Oswego County, N.Y., are mapped on a 7.5-minute U.S. Geological Survey topographic map. The map was compiled to indicate the lithology and potential for ground-water development at any specific location. (USGS)

Measuring Agreement in Participatory Mapping

ERIC Educational Resources Information Center

Caspersen, Janna R.; Van Holt, Tracy; Johnson, Jeffrey C.

2017-01-01

This article offers a way to measure agreement in participatory mapping. We asked subject matter experts (SMEs) to draw where Sudanese ethnic groups were located on a map. We then used an eigenanalysis approach to determine whether SMEs agreed on the location of ethnic groups. We used minimum residual factor analysis to assess the extent of…

TEC data ingestion into IRI and NeQuick over the antarctic region

NASA Astrophysics Data System (ADS)

Nava, Bruno; Pezzopane, Michael; Radicella, Sandro M.; Scotto, Carlo; Pietrella, Marco; Migoya Orue, Yenca; Alazo Cuartas, Katy; Kashcheyev, Anton

2016-07-01

In the present work a comparative analysis to evaluate the IRI and NeQuick 2 models capabilities in reproducing the ionospheric behaviour over the Antarctic Region has been performed. A technique to adapt the two models to GNSS-derived vertical Total Electron Content (TEC) has been therefore implemented to retrieve the 3-D ionosphere electron density at specific locations where ionosonde data were available. In particular, the electron density profiles used in this study have been provided in the framework of the AUSPICIO (AUtomatic Scaling of Polar Ionograms and Cooperative Ionospheric Observations) project applying the Adaptive Ionospheric Profiler (AIP) to ionograms recorded at eight selected mid, high-latitude and polar ionosondes. The relevant GNSS-derived vertical TEC values have been obtained from the Global Ionosphere Maps (GIM) produced by the Center for Orbit Determination in Europe (CODE). The effectiveness of the IRI and NeQuick 2 in reconstructing the ionosphere electron density at the given locations and epochs has been primarily assessed in terms of statistical comparison between experimental and model-retrieved peak parameters values (foF2 and hmF2). The analysis results indicate that in general the models are equivalent in their ability to reproduce the critical frequency of the F2 layer and they also tend to overestimate the height of the peak electron density, especially during high solar activity periods. Nevertheless this tendency is more noticeable in NeQuick 2 than in IRI. For completeness, the statistics indicating the models bottomside reconstruction capabilities, computed as height integrated electron density profile mismodeling, will also be discussed.

Electrical Conductivity Imaging Using Controlled Source Electromagnetics for Subsurface Characterization

NASA Astrophysics Data System (ADS)

Miller, C. R.; Routh, P. S.; Donaldson, P. R.

2004-05-01

Controlled Source Audio-Frequency Magnetotellurics (CSAMT) is a frequency domain electromagnetic (EM) sounding technique. CSAMT typically uses a grounded horizontal electric dipole approximately one to two kilometers in length as a source. Measurements of electric and magnetic field components are made at stations located ideally at least four skin depths away from the transmitter to approximate plane wave characteristics of the source. Data are acquired in a broad band frequency range that is sampled logarithmically from 0.1 Hz to 10 kHz. The usefulness of CSAMT soundings is to detect and map resistivity contrasts in the top two to three km of the Earth's surface. Some practical applications that CSAMT soundings have been used for include mapping ground water resources; mineral/precious metals exploration; geothermal reservoir mapping and monitoring; petroleum exploration; and geotechnical investigations. Higher frequency data can be used to image shallow features and lower frequency data are sensitive to deeper structures. We have a 3D CSAMT data set consisting of phase and amplitude measurements of the Ex and Hy components of the electric and magnetic fields respectively. The survey area is approximately 3 X 5 km. Receiver stations are situated 50 meters apart along a total of 13 lines with 8 lines bearing approximately N60E and the remainder of the lines oriented orthogonal to these 8 lines. We use an unconstrained Gauss-Newton method with positivity to invert the data. Inversion results will consist of conductivity versus depth profiles beneath each receiver station. These 1D profiles will be combined into a 3D subsurface conductivity image. We will include our interpretation of the subsurface conductivity structure and quantify the uncertainties associated with this interpretation.

Flood of June 2008 in Southern Wisconsin

USGS Publications Warehouse

Fitzpatrick, Faith A.; Peppler, Marie C.; Walker, John F.; Rose, William J.; Waschbusch, Robert J.; Kennedy, James L.

2008-01-01

In June 2008, heavy rain caused severe flooding across southern Wisconsin. The floods were aggravated by saturated soils that persisted from unusually wet antecedent conditions from a combination of floods in August 2007, more than 100 inches of snow in winter 2007-08, and moist conditions in spring 2008. The flooding caused immediate evacuations and road closures and prolonged, extensive damages and losses associated with agriculture, businesses, housing, public health and human needs, and infrastructure and transportation. Record gage heights and streamflows occurred at 21 U.S. Geological Survey streamgages across southern Wisconsin from June 7 to June 21. Peak-gage-height data, peak-streamflow data, and flood probabilities are tabulated for 32 USGS streamgages in southern Wisconsin. Peak-gage-height and peak-streamflow data also are tabulated for three ungaged locations. Extensive flooding along the Baraboo River, Kickapoo River, Crawfish River, and Rock River caused particularly severe damages in nine communities and their surrounding areas: Reedsburg, Rock Springs, La Farge, Gays Mills, Milford, Jefferson, Fort Atkinson, Janesville, and Beloit. Flood-peak inundation maps and water-surface profiles were generated for the nine communities in a geographic information system by combining flood high-water marks with available 1-10-meter resolution digital-elevation-model data. The high-water marks used in the maps were a combination of those surveyed during the June flood by communities, counties, and Federal agencies and hundreds of additional marks surveyed in August by the USGS. The flood maps and profiles outline the extent and depth of flooding through the communities and are being used in ongoing (as of November 2008) flood response and recovery efforts by local, county, State, and Federal agencies.

Using self-organizing maps to develop ambient air quality classifications: a time series example

PubMed Central

2014-01-01

Background Development of exposure metrics that capture features of the multipollutant environment are needed to investigate health effects of pollutant mixtures. This is a complex problem that requires development of new methodologies. Objective Present a self-organizing map (SOM) framework for creating ambient air quality classifications that group days with similar multipollutant profiles. Methods Eight years of day-level data from Atlanta, GA, for ten ambient air pollutants collected at a central monitor location were classified using SOM into a set of day types based on their day-level multipollutant profiles. We present strategies for using SOM to develop a multipollutant metric of air quality and compare results with more traditional techniques. Results Our analysis found that 16 types of days reasonably describe the day-level multipollutant combinations that appear most frequently in our data. Multipollutant day types ranged from conditions when all pollutants measured low to days exhibiting relatively high concentrations for either primary or secondary pollutants or both. The temporal nature of class assignments indicated substantial heterogeneity in day type frequency distributions (~1%-14%), relatively short-term durations (<2 day persistence), and long-term and seasonal trends. Meteorological summaries revealed strong day type weather dependencies and pollutant concentration summaries provided interesting scenarios for further investigation. Comparison with traditional methods found SOM produced similar classifications with added insight regarding between-class relationships. Conclusion We find SOM to be an attractive framework for developing ambient air quality classification because the approach eases interpretation of results by allowing users to visualize classifications on an organized map. The presented approach provides an appealing tool for developing multipollutant metrics of air quality that can be used to support multipollutant health studies. PMID:24990361

In situ Biological Dose Mapping Estimates the Radiation Burden Delivered to ‘Spared’ Tissue between Synchrotron X-Ray Microbeam Radiotherapy Tracks

PubMed Central

Rothkamm, Kai; Crosbie, Jeffrey C.; Daley, Frances; Bourne, Sarah; Barber, Paul R.; Vojnovic, Borivoj; Cann, Leonie; Rogers, Peter A. W.

2012-01-01

Microbeam radiation therapy (MRT) using high doses of synchrotron X-rays can destroy tumours in animal models whilst causing little damage to normal tissues. Determining the spatial distribution of radiation doses delivered during MRT at a microscopic scale is a major challenge. Film and semiconductor dosimetry as well as Monte Carlo methods struggle to provide accurate estimates of dose profiles and peak-to-valley dose ratios at the position of the targeted and traversed tissues whose biological responses determine treatment outcome. The purpose of this study was to utilise γ-H2AX immunostaining as a biodosimetric tool that enables in situ biological dose mapping within an irradiated tissue to provide direct biological evidence for the scale of the radiation burden to ‘spared’ tissue regions between MRT tracks. Γ-H2AX analysis allowed microbeams to be traced and DNA damage foci to be quantified in valleys between beams following MRT treatment of fibroblast cultures and murine skin where foci yields per unit dose were approximately five-fold lower than in fibroblast cultures. Foci levels in cells located in valleys were compared with calibration curves using known broadbeam synchrotron X-ray doses to generate spatial dose profiles and calculate peak-to-valley dose ratios of 30–40 for cell cultures and approximately 60 for murine skin, consistent with the range obtained with conventional dosimetry methods. This biological dose mapping approach could find several applications both in optimising MRT or other radiotherapeutic treatments and in estimating localised doses following accidental radiation exposure using skin punch biopsies. PMID:22238667

ALMA Measurements of the HNC and HC3N Distributions in Titan's Atmosphere

NASA Astrophysics Data System (ADS)

Cordiner, M. A.; Nixon, C. A.; Teanby, N. A.; Irwin, P. G. J.; Serigano, J.; Charnley, S. B.; Milam, S. N.; Mumma, M. J.; Lis, D. C.; Villanueva, G.; Paganini, L.; Kuan, Y.-J.; Remijan, A. J.

2014-11-01

We present spectrally and spatially resolved maps of HNC and HC3N emission from Titan's atmosphere, obtained using the Atacama Large Millimeter/submillimeter Array on 2013 November 17. These maps show anisotropic spatial distributions for both molecules, with resolved emission peaks in Titan's northern and southern hemispheres. The HC3N maps indicate enhanced concentrations of this molecule over the poles, consistent with previous studies of Titan's photochemistry and atmospheric circulation. Differences between the spectrally integrated flux distributions of HNC and HC3N show that these species are not co-spatial. The observed spectral line shapes are consistent with HNC being concentrated predominantly in the mesosphere and above (at altitudes z >~ 400 km), whereas HC3N is abundant at a broader range of altitudes (z ≈ 70-600 km). From spatial variations in the HC3N line profile, the locations of the HC3N emission peaks are shown to be variable as a function of altitude. The peaks in the integrated emission from HNC and the line core (upper atmosphere) component of HC3N (at z >~ 300 km) are found to be asymmetric with respect to Titan's polar axis, indicating that the mesosphere may be more longitudinally variable than previously thought. The spatially integrated HNC and HC3N spectra are modeled using the NEMESIS planetary atmosphere code and the resulting best-fitting disk-averaged vertical mixing ratio profiles are found to be in reasonable agreement with previous measurements for these species. Vertical column densities of the best-fitting gradient models for HNC and HC3N are 1.9 × 1013 cm-2 and 2.3 × 1014 cm-2, respectively.

a Webgis to Support Gpr 3d Data Acquisition: a First Step for the Integration of Underground Utility Networks in 3d City Models

NASA Astrophysics Data System (ADS)

Tabarro, P. G.; Pouliot, J.; Fortier, R.; Losier, L.-M.

2017-10-01

For the planning and sustainable development of large cities, it is critical to accurately locate and map, in 3D, existing underground utility networks (UUN) such as pipelines, cables, ducts, and channels. An emerging non-invasive instrument for collecting underground data such as UUN is the ground-penetrating radar (GPR). Although its capabilities, handling GPR and extracting relevant information from its data are not trivial tasks. For instance, both GPR and its complimentary software stack provide very few capabilities to co-visualize GPR collected data and other sources of spatial data such as orthophotography, DEM or road maps. Furthermore, the GPR interface lacks functionalities for adding annotation, editing geometric objects or querying attributes. A new approach to support GPR survey is proposed in this paper. This approach is based on the integration of multiple sources of geospatial datasets and the use of a Web-GIS system and relevant functionalities adapted to interoperable GPR data acquisition. The Web-GIS is developed as an improved module in an existing platform called GVX. The GVX-GPR module provides an interactive visualization of multiple layers of structured spatial data, including GPR profiles. This module offers new features when compared to traditional GPR surveys such as geo-annotated points of interest for identifying spatial clues in the GPR profiles, integration of city contextual data, high definition drone and satellite pictures, as-built, and more. The paper explains the engineering approach used to design and develop the Web GIS and tests for this survey approach, mapping and recording UUN as part of 3D city model.

Flood-inundation maps for an 8.9-mile reach of the South Fork Little River at Hopkinsville, Kentucky

USGS Publications Warehouse

Lant, Jeremiah G.

2013-01-01

Digital flood-inundation maps for an 8.9-mile reach of South Fork Little River at Hopkinsville, Kentucky, were created by the U.S. Geological Survey (USGS) in cooperation with the City of Hopkinsville Community Development Services. The inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation/ depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) at the USGS streamgage at South Fork Little River at Highway 68 By-Pass at Hopkinsville, Kentucky (station no. 03437495). Current conditions for the USGS streamgage may be obtained online at the USGS National Water Information System site (http://waterdata.usgs.gov/nwis/inventory?agency_code=USGS&site_no=03437495). In addition, the information has been provided to the National Weather Service (NWS) for incorporation into their Advanced Hydrologic Prediction Service flood warning system (http://water.weather.gov/ahps/). The NWS forecasts flood hydrographs at many places that are often co-located at USGS streamgages. The forecasted peak-stage information, also available on the Internet, may be used in conjunction with the maps developed in this study to show predicted areas of flood inundation. In this study, flood profiles were computed for the South Fork Little River reach by using HEC-RAS, a one-dimensional step-backwater model developed by the U.S. Army Corps of Engineers. The hydraulic model was calibrated by using the most current (2012) stage-discharge relation at the South Fork Little River at Highway 68 By-Pass at Hopkinsville, Kentucky, streamgage and measurements collected during recent flood events. The calibrated model was then used to calculate 13 water-surface profiles for a sequence of flood stages, most at 1-foot intervals, referenced to the streamgage datum and ranging from a stage near bank full to the estimated elevation of the 1.0-percent annual exceedance probability flood at the streamgage. To delineate the flooded area at each interval flood stage, the simulated water-surface profiles were combined with a Digital Elevation Model (DEM) of the study area by using Geographic Information System (GIS) software. The DEM consisted of bare-earth elevations within the study area and was derived from a Light Detection And Ranging (LiDAR) dataset having a 3.28-foot horizontal resolution. These flood-inundation maps, along with online information regarding current stages from USGS streamgage and forecasted stages from the NWS, provide emergency management and local residents with critical information for flood response activities such as evacuations, road closures, and post-flood recovery efforts.

Seismicity map of the state of Georgia

USGS Publications Warehouse

Reagor, B. Glen; Stover, C.W.; Algermissen, S.T.; Long, L.T.

1991-01-01

This map is one of a series of seismicity maps produced by the U.S. Geological Survey that show earthquake data of individual states or groups of states at the scale of 1:1,000,000. This maps shows only those earthquakes with epicenters located within the boundaries of Georgia, even though earthquakes in nearby states or countries may have been felt or may have cause damage in Georgia. The data in table 1 were used to compile the seismicity map; these data are a corrected, expanded, and updated (through 1987) version of the data used by Algermissen (1969) for a study of seismic risk in the United States. The locations and intensities of some earthquakes were revised and intensities were assigned where none had been before. Many earthquakes were added to the original list from new data sources as well as from some old data sources that has not been previously used. The data in table 1 represent best estimates of the location of the epicenter, magnitude, and intensity of each earthquake on the basis of historical and current information. Some of the aftershocks from large earthquakes are listed, but not all, especially for earthquakes that occurred before seismic instruments were universally used. The latitude and longitude coordinates of each epicenter were rounded to the nearest tenth of a degree and sorted so that all identical locations were grouped and counted. These locations are represented on the map by a triangle. The number of earthquakes at each location is shown on the map by the Arabic number to the right of the triangle. A Roman numeral to the left of a triangle is the maximum Modified Mercoili intensity (Wood and Neumann, 1931) of all earthquakes at that geographic location, The absence of an intensity value indicates that no intensities have been assigned to earthquakes at that location. The year shown below each triangle is the latest year for which the maximum intensity was recorded.

Seismicity map of the State of Louisiana

USGS Publications Warehouse

Stover, C.W.; Reagor, B.G.; Algermissen, S.T.

1979-01-01

This map is one of a series of seismicity maps produced by the U. S. Geological Survey that show earthquake data of individual states or groups of states at the scale of 1:1,000,000. This map shows only those earthquakes with epicenters located within the boundaries of Louisiana, even though earthquakes in nearby states or countries may have been felt or may have caused damage in Louisiana.The data in table 1 were used to compile the seismicity map; these data are a corrected, expanded, and updated (through 1983) version of the data used by Algermissen (1969) for a study of seismic risk in the United States. The locations and intensities of some earthquakes were revised and intensities were assigned where none had been before. Many earthquakes were added to the original list from new data sources as well as from some old data sources that had not been previously used. The data in table 1 represent best estimates of the location of the epicenter, magnitude, and intensity of each earthquake on the basis of historical and current information. Some of the aftershocks from large earthquakes are listed, but not all, especially for earthquakes that occurred before seismic instruments were universally used.The latitude and longitude coordinates of each epicenter were rounded to the nearest tenth of a degree and sorted so that all identical locations were grouped and counted. These locations are represented on the map by a triangle. The number of earthquakes at each location is shown on the map by the arabic number to the right of the triangle. A Roman numeral to the 1eft of a triangle is the maximum Modified Mercalli intensity (Wood and Neumann, 1931) of all earthquakes at that geographic location. The absence of an intensity value indicates that no intensities have been assigned to earthquakes at that location. The year shown below each triangle is the latest year for which the maximum intensity was recorded.

Seismicity map of the state of Pennsylvania

USGS Publications Warehouse

Stover, C.W.; Reagor, B.G.; Algermissen, S.T.

1987-01-01

This map is one of a series of seismicity maps produced by the U. S. Geological Survey that show earthquake data of individual states or groups of states at the scale of 1:1,000,000. This map shows only those earthquakes with epicenters located within the boundaries of Pennsylvania, even though earthquakes in nearby states may have been felt or may have caused damage in Pennsylvania.The data in table 1 were used to compile the seismicity map; these data are a corrected, expanded, and updated (through 1983) version of the data used by Algermissen (1969) for a study of seismic risk in the United States. The locations and intensities of some earthquakes were revised and intensities were assigned where none had been before. Many earthquakes were added to the original list from new data sources as well as from some old data sources that had not been previously used. The data in table 1 represent best estimates of the location of the epicenter, magnitude, and intensity of each earthquake on the basis of historical and current information. Some of the aftershocks from large earthquakes are listed, but not all, especially for earthquakes that occurred before seismic instruments were universally used.The latitude and longitude coordinates of each epicenter were rounded to the nearest tenth of a degree and sorted so that all identical locations were grouped and counted. These locations are represented on the map by a triangle. The number of earthquakes at each location is shown on the map by the arabic number to the right of the triangle. A Roman numeral to the left of a triangle is the maximum Modified Mercalli intensity (Wood and Neumann, 1931) of a11 earthquakes at that geographic location. The absence of an intensity value indicates that no intensities have been assigned to earthquakes at that location. The year shown below each triangle is the latest year for which the maximum intensity was recorded.

BLISS is a versatile and quantitative method for genome-wide profiling of DNA double-strand breaks.

PubMed

Yan, Winston X; Mirzazadeh, Reza; Garnerone, Silvano; Scott, David; Schneider, Martin W; Kallas, Tomasz; Custodio, Joaquin; Wernersson, Erik; Li, Yinqing; Gao, Linyi; Federova, Yana; Zetsche, Bernd; Zhang, Feng; Bienko, Magda; Crosetto, Nicola

2017-05-12

Precisely measuring the location and frequency of DNA double-strand breaks (DSBs) along the genome is instrumental to understanding genomic fragility, but current methods are limited in versatility, sensitivity or practicality. Here we present Breaks Labeling In Situ and Sequencing (BLISS), featuring the following: (1) direct labelling of DSBs in fixed cells or tissue sections on a solid surface; (2) low-input requirement by linear amplification of tagged DSBs by in vitro transcription; (3) quantification of DSBs through unique molecular identifiers; and (4) easy scalability and multiplexing. We apply BLISS to profile endogenous and exogenous DSBs in low-input samples of cancer cells, embryonic stem cells and liver tissue. We demonstrate the sensitivity of BLISS by assessing the genome-wide off-target activity of two CRISPR-associated RNA-guided endonucleases, Cas9 and Cpf1, observing that Cpf1 has higher specificity than Cas9. Our results establish BLISS as a versatile, sensitive and efficient method for genome-wide DSB mapping in many applications.

FANTOM5 CAGE profiles of human and mouse samples.

PubMed

Noguchi, Shuhei; Arakawa, Takahiro; Fukuda, Shiro; Furuno, Masaaki; Hasegawa, Akira; Hori, Fumi; Ishikawa-Kato, Sachi; Kaida, Kaoru; Kaiho, Ai; Kanamori-Katayama, Mutsumi; Kawashima, Tsugumi; Kojima, Miki; Kubosaki, Atsutaka; Manabe, Ri-Ichiroh; Murata, Mitsuyoshi; Nagao-Sato, Sayaka; Nakazato, Kenichi; Ninomiya, Noriko; Nishiyori-Sueki, Hiromi; Noma, Shohei; Saijyo, Eri; Saka, Akiko; Sakai, Mizuho; Simon, Christophe; Suzuki, Naoko; Tagami, Michihira; Watanabe, Shoko; Yoshida, Shigehiro; Arner, Peter; Axton, Richard A; Babina, Magda; Baillie, J Kenneth; Barnett, Timothy C; Beckhouse, Anthony G; Blumenthal, Antje; Bodega, Beatrice; Bonetti, Alessandro; Briggs, James; Brombacher, Frank; Carlisle, Ailsa J; Clevers, Hans C; Davis, Carrie A; Detmar, Michael; Dohi, Taeko; Edge, Albert S B; Edinger, Matthias; Ehrlund, Anna; Ekwall, Karl; Endoh, Mitsuhiro; Enomoto, Hideki; Eslami, Afsaneh; Fagiolini, Michela; Fairbairn, Lynsey; Farach-Carson, Mary C; Faulkner, Geoffrey J; Ferrai, Carmelo; Fisher, Malcolm E; Forrester, Lesley M; Fujita, Rie; Furusawa, Jun-Ichi; Geijtenbeek, Teunis B; Gingeras, Thomas; Goldowitz, Daniel; Guhl, Sven; Guler, Reto; Gustincich, Stefano; Ha, Thomas J; Hamaguchi, Masahide; Hara, Mitsuko; Hasegawa, Yuki; Herlyn, Meenhard; Heutink, Peter; Hitchens, Kelly J; Hume, David A; Ikawa, Tomokatsu; Ishizu, Yuri; Kai, Chieko; Kawamoto, Hiroshi; Kawamura, Yuki I; Kempfle, Judith S; Kenna, Tony J; Kere, Juha; Khachigian, Levon M; Kitamura, Toshio; Klein, Sarah; Klinken, S Peter; Knox, Alan J; Kojima, Soichi; Koseki, Haruhiko; Koyasu, Shigeo; Lee, Weonju; Lennartsson, Andreas; Mackay-Sim, Alan; Mejhert, Niklas; Mizuno, Yosuke; Morikawa, Hiromasa; Morimoto, Mitsuru; Moro, Kazuyo; Morris, Kelly J; Motohashi, Hozumi; Mummery, Christine L; Nakachi, Yutaka; Nakahara, Fumio; Nakamura, Toshiyuki; Nakamura, Yukio; Nozaki, Tadasuke; Ogishima, Soichi; Ohkura, Naganari; Ohno, Hiroshi; Ohshima, Mitsuhiro; Okada-Hatakeyama, Mariko; Okazaki, Yasushi; Orlando, Valerio; Ovchinnikov, Dmitry A; Passier, Robert; Patrikakis, Margaret; Pombo, Ana; Pradhan-Bhatt, Swati; Qin, Xian-Yang; Rehli, Michael; Rizzu, Patrizia; Roy, Sugata; Sajantila, Antti; Sakaguchi, Shimon; Sato, Hiroki; Satoh, Hironori; Savvi, Suzana; Saxena, Alka; Schmidl, Christian; Schneider, Claudio; Schulze-Tanzil, Gundula G; Schwegmann, Anita; Sheng, Guojun; Shin, Jay W; Sugiyama, Daisuke; Sugiyama, Takaaki; Summers, Kim M; Takahashi, Naoko; Takai, Jun; Tanaka, Hiroshi; Tatsukawa, Hideki; Tomoiu, Andru; Toyoda, Hiroo; van de Wetering, Marc; van den Berg, Linda M; Verardo, Roberto; Vijayan, Dipti; Wells, Christine A; Winteringham, Louise N; Wolvetang, Ernst; Yamaguchi, Yoko; Yamamoto, Masayuki; Yanagi-Mizuochi, Chiyo; Yoneda, Misako; Yonekura, Yohei; Zhang, Peter G; Zucchelli, Silvia; Abugessaisa, Imad; Arner, Erik; Harshbarger, Jayson; Kondo, Atsushi; Lassmann, Timo; Lizio, Marina; Sahin, Serkan; Sengstag, Thierry; Severin, Jessica; Shimoji, Hisashi; Suzuki, Masanori; Suzuki, Harukazu; Kawai, Jun; Kondo, Naoto; Itoh, Masayoshi; Daub, Carsten O; Kasukawa, Takeya; Kawaji, Hideya; Carninci, Piero; Forrest, Alistair R R; Hayashizaki, Yoshihide

2017-08-29

In the FANTOM5 project, transcription initiation events across the human and mouse genomes were mapped at a single base-pair resolution and their frequencies were monitored by CAGE (Cap Analysis of Gene Expression) coupled with single-molecule sequencing. Approximately three thousands of samples, consisting of a variety of primary cells, tissues, cell lines, and time series samples during cell activation and development, were subjected to a uniform pipeline of CAGE data production. The analysis pipeline started by measuring RNA extracts to assess their quality, and continued to CAGE library production by using a robotic or a manual workflow, single molecule sequencing, and computational processing to generate frequencies of transcription initiation. Resulting data represents the consequence of transcriptional regulation in each analyzed state of mammalian cells. Non-overlapping peaks over the CAGE profiles, approximately 200,000 and 150,000 peaks for the human and mouse genomes, were identified and annotated to provide precise location of known promoters as well as novel ones, and to quantify their activities.

FANTOM5 CAGE profiles of human and mouse samples

PubMed Central

Noguchi, Shuhei; Arakawa, Takahiro; Fukuda, Shiro; Furuno, Masaaki; Hasegawa, Akira; Hori, Fumi; Ishikawa-Kato, Sachi; Kaida, Kaoru; Kaiho, Ai; Kanamori-Katayama, Mutsumi; Kawashima, Tsugumi; Kojima, Miki; Kubosaki, Atsutaka; Manabe, Ri-ichiroh; Murata, Mitsuyoshi; Nagao-Sato, Sayaka; Nakazato, Kenichi; Ninomiya, Noriko; Nishiyori-Sueki, Hiromi; Noma, Shohei; Saijyo, Eri; Saka, Akiko; Sakai, Mizuho; Simon, Christophe; Suzuki, Naoko; Tagami, Michihira; Watanabe, Shoko; Yoshida, Shigehiro; Arner, Peter; Axton, Richard A.; Babina, Magda; Baillie, J. Kenneth; Barnett, Timothy C.; Beckhouse, Anthony G.; Blumenthal, Antje; Bodega, Beatrice; Bonetti, Alessandro; Briggs, James; Brombacher, Frank; Carlisle, Ailsa J.; Clevers, Hans C.; Davis, Carrie A.; Detmar, Michael; Dohi, Taeko; Edge, Albert S.B.; Edinger, Matthias; Ehrlund, Anna; Ekwall, Karl; Endoh, Mitsuhiro; Enomoto, Hideki; Eslami, Afsaneh; Fagiolini, Michela; Fairbairn, Lynsey; Farach-Carson, Mary C.; Faulkner, Geoffrey J.; Ferrai, Carmelo; Fisher, Malcolm E.; Forrester, Lesley M.; Fujita, Rie; Furusawa, Jun-ichi; Geijtenbeek, Teunis B.; Gingeras, Thomas; Goldowitz, Daniel; Guhl, Sven; Guler, Reto; Gustincich, Stefano; Ha, Thomas J.; Hamaguchi, Masahide; Hara, Mitsuko; Hasegawa, Yuki; Herlyn, Meenhard; Heutink, Peter; Hitchens, Kelly J.; Hume, David A.; Ikawa, Tomokatsu; Ishizu, Yuri; Kai, Chieko; Kawamoto, Hiroshi; Kawamura, Yuki I.; Kempfle, Judith S.; Kenna, Tony J.; Kere, Juha; Khachigian, Levon M.; Kitamura, Toshio; Klein, Sarah; Klinken, S. Peter; Knox, Alan J.; Kojima, Soichi; Koseki, Haruhiko; Koyasu, Shigeo; Lee, Weonju; Lennartsson, Andreas; Mackay-sim, Alan; Mejhert, Niklas; Mizuno, Yosuke; Morikawa, Hiromasa; Morimoto, Mitsuru; Moro, Kazuyo; Morris, Kelly J.; Motohashi, Hozumi; Mummery, Christine L.; Nakachi, Yutaka; Nakahara, Fumio; Nakamura, Toshiyuki; Nakamura, Yukio; Nozaki, Tadasuke; Ogishima, Soichi; Ohkura, Naganari; Ohno, Hiroshi; Ohshima, Mitsuhiro; Okada-Hatakeyama, Mariko; Okazaki, Yasushi; Orlando, Valerio; Ovchinnikov, Dmitry A.; Passier, Robert; Patrikakis, Margaret; Pombo, Ana; Pradhan-Bhatt, Swati; Qin, Xian-Yang; Rehli, Michael; Rizzu, Patrizia; Roy, Sugata; Sajantila, Antti; Sakaguchi, Shimon; Sato, Hiroki; Satoh, Hironori; Savvi, Suzana; Saxena, Alka; Schmidl, Christian; Schneider, Claudio; Schulze-Tanzil, Gundula G.; Schwegmann, Anita; Sheng, Guojun; Shin, Jay W.; Sugiyama, Daisuke; Sugiyama, Takaaki; Summers, Kim M.; Takahashi, Naoko; Takai, Jun; Tanaka, Hiroshi; Tatsukawa, Hideki; Tomoiu, Andru; Toyoda, Hiroo; van de Wetering, Marc; van den Berg, Linda M.; Verardo, Roberto; Vijayan, Dipti; Wells, Christine A.; Winteringham, Louise N.; Wolvetang, Ernst; Yamaguchi, Yoko; Yamamoto, Masayuki; Yanagi-Mizuochi, Chiyo; Yoneda, Misako; Yonekura, Yohei; Zhang, Peter G.; Zucchelli, Silvia; Abugessaisa, Imad; Arner, Erik; Harshbarger, Jayson; Kondo, Atsushi; Lassmann, Timo; Lizio, Marina; Sahin, Serkan; Sengstag, Thierry; Severin, Jessica; Shimoji, Hisashi; Suzuki, Masanori; Suzuki, Harukazu; Kawai, Jun; Kondo, Naoto; Itoh, Masayoshi; Daub, Carsten O.; Kasukawa, Takeya; Kawaji, Hideya; Carninci, Piero; Forrest, Alistair R.R.; Hayashizaki, Yoshihide

2017-01-01

In the FANTOM5 project, transcription initiation events across the human and mouse genomes were mapped at a single base-pair resolution and their frequencies were monitored by CAGE (Cap Analysis of Gene Expression) coupled with single-molecule sequencing. Approximately three thousands of samples, consisting of a variety of primary cells, tissues, cell lines, and time series samples during cell activation and development, were subjected to a uniform pipeline of CAGE data production. The analysis pipeline started by measuring RNA extracts to assess their quality, and continued to CAGE library production by using a robotic or a manual workflow, single molecule sequencing, and computational processing to generate frequencies of transcription initiation. Resulting data represents the consequence of transcriptional regulation in each analyzed state of mammalian cells. Non-overlapping peaks over the CAGE profiles, approximately 200,000 and 150,000 peaks for the human and mouse genomes, were identified and annotated to provide precise location of known promoters as well as novel ones, and to quantify their activities. PMID:28850106

Ocean currents and acoustic backscatter data from shipboard ADCP measurements at three North Atlantic seamounts between 2004 and 2015.

PubMed

Mohn, Christian; Denda, Anneke; Christiansen, Svenja; Kaufmann, Manfred; Peine, Florian; Springer, Barbara; Turnewitsch, Robert; Christiansen, Bernd

2018-04-01

Seamounts are amongst the most common physiographic structures of the deep-ocean landscape, but remoteness and geographic complexity have limited the systematic collection of integrated and multidisciplinary data in the past. Consequently, important aspects of seamount ecology and dynamics remain poorly studied. We present a data collection of ocean currents and raw acoustic backscatter from shipboard Acoustic Doppler Current Profiler (ADCP) measurements during six cruises between 2004 and 2015 in the tropical and subtropical Northeast Atlantic to narrow this gap. Measurements were conducted at seamount locations between the island of Madeira and the Portuguese mainland (Ampère, Seine Seamount), as well as east of the Cape Verde archipelago (Senghor Seamount). The dataset includes two-minute ensemble averaged continuous velocity and backscatter profiles, supplemented by spatially gridded maps for each velocity component, error velocity and local bathymetry. The dataset is freely available from the digital data library PANGAEA at https://doi.pangaea.de/10.1594/PANGAEA.883193.

GPR Investigations in the Port of Erythrai (İzmir) Archaeological Site

NASA Astrophysics Data System (ADS)

Timur, Emre; Sarı, Coşkun; Erhan, Zülfikar; Gül Akalın Orbay, Ayşe

2016-04-01

Archaeology and the cultural heritage field can greatly benefit from reliable and non-destructive geophysical methods to map areas and structures present in the subsoil without the need for excavation. The GPR method provides coherent and interpretable images of the subsurface structures due to good signal penetration. Erythrai archaeological site is located in Çeşme district of city of İzmir (Turkey). The site has been excavated since 1960's and a great demand appeared nowadays for exploring unexcavated parts, according to improving touristic potential. Ground Penetrating Radar (GPR) measurements were carried out at the ancient port of the site. Study area was splitted into 4 parts and data were collected along 130 profiles with a profile interval of 1 m and varying lengths between 20 and 30 m. Data were interpreted and presented as 2-D vertical radargrams, horizontal time slices and 3-D models. As a result, possible ruins of shipment or fisherman shelters were determined and excavation areas were recommended.

Delineation of flooding within the upper Mississippi River Basin, 1993-flood of June 29-September 18, 1993, in Iowa City and vicinity, Iowa

USGS Publications Warehouse

Schaap, Bryan D.; Harvey, Craig A.

1995-01-01

The hydrologic investigations atlas shows the areas in and around Iowa City, Iowa, that were flooded by the Iowa River in 1993. This map also depicts the Federal Emergency Management Agency (FEMA) 100-year flood boundaries. The drainage basin of the Iowa River at Iowa City received well over 100 percent of normal rainfall in June, July, and August, 1993. At the Cedar Rapids airport, located about 20 miles north-northwest of Iowa City, July rainfall was 414 percent of normal. The discharges at U.S. Geological Survey streamflow-gaging stations on the Iowa River upstream of Coralville Reservoir, just downstream from Coralville Reservoir, and at Iowa City are shown. A profile of the maximum water-surface elevations of the 1993 flood in Iowa City and vicinity is higher than the FEMA 100-year flood profile. The water-surface elevation of Coralville Reservoir is shown from June 29-September 18, 1993.

Airborne gamma-ray spectrometer and magnetometer survey, Cape Flattery quadrange (Washington). Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1981-01-01

No uranium anomalies meet the minimum statistical requirements as defined. There is no Uranium Anomaly Interpretation Map for the Cape Flattery quadrangle. Potassium (%K), equivalent Uranium (ppM eU), equivalent Thorium (ppM eT), eU/eT, eU/K, eT/K, and magnetic pseudo-contour maps are presented in Appendix E. Stacked Profiles showing geologic strip maps along each flight-line, together with sensor data, and ancillary data are presented in Appendix F. All maps and profiles were prepared on a scale of 1:250,000, but have been reduced to 1:500,000 for presentation.

Airborne gamma-ray spectrometer and magnetometer survey, Copalis Beach quadrangle (Washington). Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1981-01-01

No uranium anomalies meet the minimum statistical requirements as defined. There is no Uranium Anomaly Interpretation Map for the Copalis Beach quadrangle. Potassium (%K), equivalent Uranium (ppM eU), equivalent Thorium (ppM eT), eU/eT, eU/K, eT/K, and magnetic pseudo-contour maps are presented in Appendix E. Stacked Profiles showing geologic strip maps along each flight-line, together with sensor data, and ancillary data are presented in Appendix F. All maps and profiles were prepared on a scale of 1:250,000, but have been reduced to 1:500,000 for presentation.

Geologic Map of the Neal Hot Springs Geothermal Area - GIS Data

DOE Data Explorer

Faulds, James E.

2013-03-31

Neal Hot Springs—ESRI Geodatabase (ArcGeology v1.3): - Contains all the geologic map data, including faults, contacts, folds, unit polygons, and attitudes of strata and faults. - List of stratigraphic units and stratigraphic correlation diagram. - Three cross‐sections. - Locations of production, injection, and exploration wells. - Locations of 40Ar/39Ar samples. - Location of XRF geochemical samples. - 3D model constructed with EarthVision using geologic map data, cross‐sections, drill‐hole data, and geophysics (model not in the ESRI geodatabase).

Study on the applicability of the microtremor HVSR method to support seismic microzonation in the town of Idrija (W Slovenia)

NASA Astrophysics Data System (ADS)

Gosar, Andrej

2017-06-01

The town of Idrija is located in an area with an increased seismic hazard in W Slovenia and is partly built on alluvial sediments or artificial mining and smelting deposits which can amplify seismic ground motion. There is a need to prepare a comprehensive seismic microzonation in the near future to support seismic hazard and risk assessment. To study the applicability of the microtremor horizontal-to-vertical spectral ratio (HVSR) method for this purpose, 70 free-field microtremor measurements were performed in a town area of 0.8 km2 with 50-200 m spacing between the points. The HVSR analysis has shown that it is possible to derive the sediments' resonance frequency at 48 points. With the remaining one third of the measurements, nearly flat HVSR curves were obtained, indicating a small or negligible impedance contrast with the seismological bedrock. The isofrequency (a range of 2.5-19.5 Hz) and the HVSR peak amplitude (a range of 3-6, with a few larger values) maps were prepared using the natural neighbor interpolation algorithm and compared with the geological map and the map of artificial deposits. Surprisingly no clear correlation was found between the distribution of resonance frequencies or peak amplitudes and the known extent of the supposed soft sediments or deposits. This can be explained by relatively well-compacted and rather stiff deposits and the complex geometry of sedimentary bodies. However, at several individual locations it was possible to correlate the shape and amplitude of the HVSR curve with the known geological structure and prominent site effects were established in different places. In given conditions (very limited free space and a high level of noise) it would be difficult to perform an active seismic refraction or MASW measurements to investigate the S-wave velocity profiles and the thickness of sediments in detail, which would be representative enough for microzonation purposes. The importance of the microtremor method is therefore even greater, because it enables a direct estimation of the resonance frequency without knowing the internal structure and physical properties of the shallow subsurface. The results of this study can be directly used in analyses of the possible occurrence of soil-structure resonance of individual buildings, including important cultural heritage mining and other structures protected by UNESCO. Another application of the derived free-field isofrequency map is to support soil classification according to the recent trends in building codes and to calibrate Vs profiles obtained from the microtremor array or geophysical measurements.

statement of significance, location map, site plan, landscape plan, site ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

statement of significance, location map, site plan, landscape plan, site sections, evolution of cemetery landscape. - San Francisco National Cemetery, 1 Lincoln Boulevard, San Francisco, San Francisco County, CA

Development of flood profiles and flood-inundation maps for the Village of Killbuck, Ohio

USGS Publications Warehouse

Ostheimer, Chad J.

2013-01-01

Digital flood-inundation maps for a reach of Killbuck Creek near the Village of Killbuck, Ohio, were created by the U.S. Geological Survey (USGS), in cooperation with Holmes County, Ohio. The inundation maps depict estimates of the areal extent of flooding corresponding to water levels (stages) at the USGS streamgage Killbuck Creek near Killbuck (03139000) and were completed as part of an update to Federal Emergency Management Agency Flood-Insurance Study. The maps were provided to the National Weather Service (NWS) for incorporation into a Web-based flood-warning system that can be used in conjunction with NWS flood-forecast data to show areas of predicted flood inundation associated with forecasted flood-peak stages. The digital maps also have been submitted for inclusion in the data libraries of the USGS interactive Flood Inundation Mapper. Data from the streamgage can be used by emergency-management personnel, in conjunction with the flood-inundation maps, to help determine a course of action when flooding is imminent. Flood profiles for selected reaches were prepared by calibrating a steady-state step-backwater model to an established streamgage rating curve. The step-backwater model then was used to determine water-surface-elevation profiles for 10 flood stages at the streamgage with corresponding streamflows ranging from approximately the 50- to 0.2-percent annual exceedance probabilities. The computed flood profiles were used in combination with digital elevation data to delineate flood-inundation areas.

Mapping disease at an approximated individual level using aggregate data: a case study of mapping New Hampshire birth defects.

PubMed

Shi, Xun; Miller, Stephanie; Mwenda, Kevin; Onda, Akikazu; Reese, Judy; Onega, Tracy; Gui, Jiang; Karagas, Margret; Demidenko, Eugene; Moeschler, John

2013-09-06

Limited by data availability, most disease maps in the literature are for relatively large and subjectively-defined areal units, which are subject to problems associated with polygon maps. High resolution maps based on objective spatial units are needed to more precisely detect associations between disease and environmental factors. We propose to use a Restricted and Controlled Monte Carlo (RCMC) process to disaggregate polygon-level location data to achieve mapping aggregate data at an approximated individual level. RCMC assigns a random point location to a polygon-level location, in which the randomization is restricted by the polygon and controlled by the background (e.g., population at risk). RCMC allows analytical processes designed for individual data to be applied, and generates high-resolution raster maps. We applied RCMC to the town-level birth defect data for New Hampshire and generated raster maps at the resolution of 100 m. Besides the map of significance of birth defect risk represented by p-value, the output also includes a map of spatial uncertainty and a map of hot spots. RCMC is an effective method to disaggregate aggregate data. An RCMC-based disease mapping maximizes the use of available spatial information, and explicitly estimates the spatial uncertainty resulting from aggregation.

Temporal characteristics of coherent flow structures generated over alluvial sand dunes, Mississippi River, revealed by acoustic doppler current profiling and multibeam echo sounding

USGS Publications Warehouse

Czuba, John A.; Oberg, Kevin A.; Best, Jim L.; Parsons, Daniel R.; Simmons, S. M.; Johnson, K.K.; Malzone, C.

2009-01-01

This paper investigates the flow in the lee of a large sand dune located at the confluence of the Mississippi and Missouri Rivers, USA. Stationary profiles collected from an anchored boat using an acoustic Doppler current profiler (ADCP) were georeferenced with data from a real-time kinematic differential global positioning system. A multibeam echo sounder was used to map the bathymetry of the confluence and provided a morphological context for the ADCP measurements. The flow in the lee of a low-angle dune shows good correspondence with current conceptual models of flow over dunes. As expected, quadrant 2 events (upwellings of low-momentum fluid) are associated with high backscatter intensity. Turbulent events generated in the lower lee of a dune near the bed are associated with periods of vortex shedding and wake flapping. Remnant coherent structures that advect over the lower lee of the dune in the upper portion of the water column, have mostly dissipated and contribute little to turbulence intensities. The turbulent events that occupy most of the water column in the upper lee of the dune are associated with periods of wake flapping.

Covalent bond force profile and cleavage in a single polymer chain

NASA Astrophysics Data System (ADS)

Garnier, Lionel; Gauthier-Manuel, Bernard; van der Vegte, Eric W.; Snijders, Jaap; Hadziioannou, Georges

2000-08-01

We present here the measurement of the single-polymer entropic elasticity and the single covalent bond force profile, probed with two types of atomic force microscopes (AFM) on a synthetic polymer molecule: polymethacrylic acid in water. The conventional AFM allowed us to distinguish two types of interactions present in this system when doing force spectroscopic measurements: the first interaction is associated with adsorption sites of the polymer chains onto a bare gold surface, the second interaction is directly correlated to the rupture process of a single covalent bond. All these bridging interactions allowed us to stretch the single polymer chain and to determine the various factors playing a role in the elasticity of these molecules. To obtain a closer insight into the bond rupture process, we moved to a force sensor stable in position when measuring attractive forces. By optimizing the polymer length so as to fulfill the elastic stability conditions, we were able for the first time to map out the entire force profile associated with the cleavage of a single covalent bond. Experimental data coupled with molecular quantum mechanical calculations strongly suggest that the breaking bond is located at one end of the polymer chain.

The Junction of Hellenic and Cyprus Arcs: a Detailed Study of the Morphology and Neogene Tectonic Evolution of the Anaximander Mountains

NASA Astrophysics Data System (ADS)

Cranshaw, J.; Aksu, A.; Hall, J.; Cifci, G.; Dondurur, D.; Yaltirak, C.

2009-05-01

The Anaximander Mountains are enigmatic highs located at the complex corner that links the Cyprus and Hellenic Arcs in the eastern Mediterranean. They are made up of several different highs: Anaximander (sensu stricto), Anaxagoras and Anaximenes. Previous work had shown that rock samples from the Anaximander Mountain have affinity with rocks exposed on land nearby in southern Turkey. This had been explained by rifting of the Mountain away from Turkey. In contrast to that, our interpretation of around 1750 km of high-resolution multi-channel seismic reflection data acquired in 2001 showed that Anaximander Mountain is part of a broadly south-verging Miocene thrust system associated with relative southward motion of the Tauride Mountains in southern Turkey. Post-Miocene motion also involves thrusting but is accompanied by transpression and rotation. The 3-dimensional nature of the geology makes mapping of the linkage of structures difficult, so we collected an additional 500 km of multi-channel seismic reflection data acquired in 2007, extending our 2001 survey further southwards into the Mediterranean Ridge. These new profiles are shot in a grid oblique to that obtained in 2001, such that the new profile intersections provide a basis for better correlation of the earlier data. We are testing our earlier interpretation through processing and interpretation of these new profiles. Here, we present examples of the new profiles and give first indications of how our earlier interpretation is broadly corroborated by the new data, but with minor adjustments. Anaximenes Mountain is imaged to the south of our previously- mapped area and is characterized as a large south-verging thrust lifting pre-Messinian strata by up to 2 km in a 12-km wide pop-up structure. Internally, Anaximenes is dissected by several splays from the bounding thrusts.

The junction of Hellenic and Cyprus arcs: a detailed study of the morphology and Neogene tectonic evolution of the Anaximander Mountains

NASA Astrophysics Data System (ADS)

Cranshaw, J.; Aksu, A.; Hall, J.; Çifçi, G.; Dondurur, D.; Yaltırak, C.

2009-04-01

The Anaximander Mountains are enigmatic highs located at the complex corner that links the Cyprus and Hellenic Arcs in the eastern Mediterranean. They are made up of several different highs: Anaximander (sensu stricto), Anaxagoras and Anaximenes. Previous work had shown that rock samples from the Anaximander Mountain have affinity with rocks exposed on land nearby in southern Turkey. This had been explained by rifting of the Mountain away from Turkey. In contrast to that, our interpretation of around 1750 km of high-resolution multi-channel seismic reflection data acquired in 2001 showed that Anaximander Mountain is part of a broadly south-verging Miocene thrust system associated with relative southward motion of the Tauride Mountains in southern Turkey. Post-Miocene motion also involves thrusting but is accompanied by transpression and rotation. The 3-dimensional nature of the geology makes mapping of the linkage of structures difficult, so we collected an additional 500 km of multi-channel seismic reflection data acquired in 2007, extending our 2001 survey further southwards into the Mediterranean Ridge. These new profiles are shot in a grid oblique to that obtained in 2001, such that the new profile intersections provide a basis for better correlation of the earlier data. We are testing our earlier interpretation through processing and interpretation of these new profiles. Here, we present examples of the new profiles and give first indications of how our earlier interpretation is broadly corroborated by the new data, but with minor adjustments. Anaximenes Mountain is imaged to the south of our previously-mapped area and is characterized as a large south-verging thrust lifting pre-Messinian strata by up to 2 km in a 12-km wide pop-up structure. Internally, Anaximenes is dissected by several splays from the bounding thrusts.

Laboratory Study on the Effect of Tidal Stream Turbines on Hydrodynamics and Sediment Dynamics

NASA Astrophysics Data System (ADS)

Amoudry, L.; Ramirez-Mendoza, R.; Peter, T.; McLelland, S.; Simmons, S.; Parsons, D. R.; Vybulkova, L.

2016-02-01

Tidal stream turbines (TST) are one potential technology for harnessing tidal energy, and the measurement and characterisation of their wakes is important both for environmental and development reasons. Indeed, wake recovery length is an important parameter for appropriate design of arrays, and wakes may result in altered dynamics both in the water column and at the seabed. We will report on laboratory scale experiments over a mobile sediment bed, which aim to quantify the detailed wake structure and its impact on sediment transport dynamics. A 0.2 m diameter model turbine was installed in a large-scale flume (16 m long, 1.6 m wide, 0.6 m deep) at the University of Hull's Total Environment Simulator and a steady current was driven over an artificial sediment bed using recirculating pumps. A high-resolution pulse-coherent acoustic Doppler profiler (Nortek Aquadopp HR) was used to measure vertical profiles of the three-dimensional mean current at different locations downstream of the model turbine. A three-dimensional Acoustic Ripple Profiler was used to map the bed and its evolution during the experiments. Acoustic backscatter systems were also deployed in two-dimensional arrays both along the flume and across the flume. These measurements revealed that the presence of the model turbine resulted in an expected reduction of the mean current and in changes in the vertical shear profiles. The bed mapping highlighted a horseshoe-shaped scour near the model turbine, and sediment deposition in the far wake region. The model turbine significantly influenced the suspension patterns, and generated significant asymmetry in the process, which was also evident from the other measurements (flow and sediment bed). These results highlight the effects induced by TSTs on near-bed hydrodynamics, suspension dynamics, and geomorphology, which may all have to be considered prior to large-scale deployments of arrays of TSTs in shelf seas.

Antarctic Meteorite Location and Mapping Project (AMLAMP): Antarctic meteorite location map series explanatory text and user's guide to AMLAMP data

NASA Technical Reports Server (NTRS)

Schutt, J.; Fessler, B.; Cassidy, W. A.

1993-01-01

This technical report is an update to LPI Technical Report 89-02, which contained data and information that was current to May 1987. Since that time approximately 4000 new meteorites have been collected, mapped, and characterized, mainly from the numerous ice fields in the Allan Hills-David Glacier region, from the Pecora Escarpment and Moulton Escarpment in the Thiel Mountains-Patuxent region, the Wisconsin Range region, and from the Beardmore region. Meteorite location maps for ice fields from these regions have been produced and are available. This report includes explanatory texts for the maps of new areas and provides information on updates of maps of the areas covered in LPI Technical Report 89-02. Sketch maps and description of locales that have been searched and have yielded single or few meteorites are also included. The meteorite listings for all the ice fields have been updated to include any classification changes and new meteorites recovered from ice fields in the Allan Hills-David Glacier region since 1987. The text has been reorganized and minor errors in the original report have been corrected. Computing capabilities have improved immensely since the early days of this project. Current software and hardware allow easy access to data over computer networks. With various commercial software packages, the data can be used many different ways, including database creation, statistics, and mapping. The databases, explanatory texts, and the plotter files used to produce the meteorite location maps are available through a computer network. Information on how to access AMLAMP data, its formats, and ways it can be used are given in the User's Guide to AMLAMP Data section. Meteorite location maps and thematic maps may be ordered from the Lunar and Planetary Institute. Ordering information is given in Appendix A.

Seismicity map of the state of Indiana

USGS Publications Warehouse

Stover, C.W.; Reagor, B.G.; Algermissen, S.T.

1987-01-01

The latitude and longitude coordinates of each epicenter were rounded to the nearest tenth of a degree and sorted so that all identical locations were grouped and counted. These locations are represented on the map by a triangle. The number of earthquakes at each location is shown on the map by the arabic number to the right of the triangle. A Roman numeral to the left of a triangle is the maximum Modified Mercalli intensity (Wood and Neumann, 1931) of all earthquakes at that geographic location. The absence of an intensity value indicates that no intensities have been assigned to earthquakes at that location. The year shown below each triangle is the latest year for which the maximum intensity was recorded.

Seismicity map of the state of Idaho

USGS Publications Warehouse

Stover, Carl W.; Reagor, B.G.; Algermissen, S.T.

1991-01-01

The latitude and longitude coordinates of each epicenter were rounded to the nearest tenth of a degree and sorted so that all identical locations were grouped and counted. These locations are represented on the map by a triangle. The number of earthquakes at each location is shown on the map by the Arabic number to the right of the triangle. A Roman numeral to the left of a triangle is the maximum Modified Mercalli intensity (Wood and Neumann, 1931) of all earthquakes at that geographic location. The absence of an intensity value indicates that no intensities have been assigned to earthquakes at that location. The year shown below each triangle is the latest year for which the maximum intensity was recorded.

Seismicity map of the state of North Carolina

USGS Publications Warehouse

Reagor, B.G.; Stover, C.W.; Algermissen, S.T.

1987-01-01

The latitude and longitude coordinates of each epicenter were rounded to the nearest tenth of a degree and sorted so that all identical locations were grouped and counted. These locations are represented on the map by a triangle. The number of earthquakes at each location is shown on the map by the arabic number to the right of the triangle. A Roman numeral to the left of a triangle is the maximum Modified Mercalli intensity (Wood and Neumann, 1931) of a11 earthquakes at that geographic location. The absence of an intensity value indicates that no intensities have been assigned to earthquakes at that location. The year shown below each triangle is the latest year for which the maximum intensity was recorded.

Seismicity map of the state of Vermont

USGS Publications Warehouse

Stover, C.W.; Reagor, B.G.; Highland, L.M.; Algermissen, S.T.

1987-01-01

The latitude and longitude coordinates of each epicenter were rounded to the nearest tenth of a degree and sorted so that all identical locations were grouped and counted. These locations are represented on the map by a triangle. The number of earthquakes at each location is shown on the map by the arabic number to the right of the triangle. A Roman numeral to the 1eft of a triangle is the maximum Modified Mercalli intensity (Wood and Neumann, 1931) of all earthquakes at that geographic location. The absence of an intensity value indicates that no intensities have been assigned to earthquakes at that location. The year shown below each triangle is the latest year for which the maximum intensity was recorded.

Seismicity map of the state of Ohio

USGS Publications Warehouse

Stover, C.W.; Reagor, B.G.; Algermissen, S.T.

1987-01-01

The latitude and longitude coordinates of each epicenter were rounded to the nearest tenth of a degree and sorted so that all identical locations were grouped and counted . These locations are represented on the map by a triangle. The number of earthquakes at each location is shown on the map by the arabic number to the right of the triangle. A Roman numeral to the left of a triangle is the maximum Modified Mercalli intensity (Wood and Neumann, 1931) of all earthquakes at that geographic location. The absence of an intensity value indicates that no intensities have been assigned to earthquakes at that location. The year shown below each triangle is the latest year for which the maximum intensity was recorded.

Comparison of Tropical Ozone from SHADOZ with Remote Sensing Retrievals from Suomi-npp Ozone Mapping Profile Suite (OMPS)

NASA Technical Reports Server (NTRS)

Witte, Jacquelyn C.; Thompson, Anne M.; Ziemke, Jerald R.; Wargan, Krzysztof

2014-01-01

The Ozone Mapping Profile Suite (OMPS) was launched October 28, 2011 on-board the Suomi NPP satellite (http://npp.gsfc.nasa.gov). OMPS is the next generation total column ozone mapping instrument for monitoring the global distribution of stratospheric ozone. OMPS includes a limb profiler to measure the vertical structure of stratosphere ozone down to the mid-troposphere. This study uses tropical ozonesonde profile measurements from the Southern Hemisphere Additional Ozonesondes (SHADOZ, http://croc.gsfc.nasa.gov/shadoz) archive to evaluate total column ozone retrievals from OMPS and concurrent measurements from the Aura Ozone Monitoring Instrument (OMI), the predecessor of OMPS with a data record going back to 2004. We include ten SHADOZ stations that contain data overlapping the OMPS time period (2012-2013). This study capitalizes on the ozone profile measurements from SHADOZ to evaluate OMPS limb profile retrievals. Finally, we use SHADOZ sondes and OMPS retrievals to examine the agreement with the GEOS-5 Ozone Assimilation System (GOAS). The GOAS uses data from the OMI and the Microwave Limb Sounder (MLS) to constrain the total column and stratospheric profiles of ozone. The most recent version of the assimilation system is well constrained to the total column compared with SHADOZ ozonesonde data.

Geophysical investigation of 216-U-8 clay vitrified pipe transfer line, 200 West Area

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bergstrom, K.A.

1994-12-05

Two geophysical surveys were conducted over a vitrified clay pipeline (VCP) that was used to transfer liquid radioactive waste from the 224-U Building to the 216-U-8 and 216-U-12 cribs. The objectives of the surveys were to locate the VCP in the northern site, locate the bends in the VCP in the southern site, and locate possible utilities or pipelines at both sites. Ground-penetrating radar (GPR) was the method chosen for the surveys. Electromagnetic induction (EMI) was also used at the southern site to map the extent of a possible pipeline. It is very difficult to detect most VCPs with GPR,more » however, excavation boundaries for the pipeline are often discernible. The VCP was not identified in the GPR data at the northern site. Its anticipated depth was 10--12 ft. The VCP at the southern site appears to be much shallower. The data suggest it may be 5 ft or less below the surface in places. The edges of the excavation from N100 to N190 are between E120 and E135 and were quite distinct in the data. However, the excavation boundaries weren`t apparent north of N190, suggesting that the VCP bends to the north near N200. Several profiles were extended beyond N200. These profiles detected a linear, with the characteristic signature of a pipeline, approximately 3 ft below the surface. There was no previous knowledge of the pipeline. The linear was traced across the entire surface contamination area with an EMI geophysical tool.« less

The Ozone Mapping and Profiler Suite (OMPS) Limb Profiler (LP) Version 1 aerosol extinction retrieval algorithm: theoretical basis

NASA Astrophysics Data System (ADS)

Loughman, Robert; Bhartia, Pawan K.; Chen, Zhong; Xu, Philippe; Nyaku, Ernest; Taha, Ghassan

2018-05-01

The theoretical basis of the Ozone Mapping and Profiler Suite (OMPS) Limb Profiler (LP) Version 1 aerosol extinction retrieval algorithm is presented. The algorithm uses an assumed bimodal lognormal aerosol size distribution to retrieve aerosol extinction profiles at 675 nm from OMPS LP radiance measurements. A first-guess aerosol extinction profile is updated by iteration using the Chahine nonlinear relaxation method, based on comparisons between the measured radiance profile at 675 nm and the radiance profile calculated by the Gauss-Seidel limb-scattering (GSLS) radiative transfer model for a spherical-shell atmosphere. This algorithm is discussed in the context of previous limb-scattering aerosol extinction retrieval algorithms, and the most significant error sources are enumerated. The retrieval algorithm is limited primarily by uncertainty about the aerosol phase function. Horizontal variations in aerosol extinction, which violate the spherical-shell atmosphere assumed in the version 1 algorithm, may also limit the quality of the retrieved aerosol extinction profiles significantly.

­­­­High-Resolution Mapping of Kick`em Jenny Submarine Volcano and Associated Landslides

NASA Astrophysics Data System (ADS)

Ruchala, T. L.; Carey, S.; Hart, L.; Chen, M.; Scott, C.; Tominaga, M.; Dondin, F. J. Y.; Fujii, M.

2016-02-01

To understand the physical and geological processes that drive the volcanism and control the morphology of Kick`em Jenny (KEJ) volcano, the only active submarine volcano in the in the Lesser Antilles volcanic arc, we conducted near-source, high-resolution mapping of KEJ and its subsurface using the Remotely Operated Vehicle (ROV) Hercules during cruise NA054 of the E/V Nautilus (Sept.-Oct. 2014). Shipboard bathymetric data (EM302 system) and slope analysis maps were used to decipher the detailed seafloor morphology surrounding KEJ. Multiple generations of submarine landslides and canyons were observed, suggesting the area has been hosting dynamic sediment transport systems at multiple scales over time. Some of them might have been associated by past eruptions. Clear contacts between partially lithified carbonate sediments and volcanic formations were identified from ROV videos at the middle of the landslide slope face. Detailed observations of facies on these exposures provide constraints on the time intervals between landslide events along the western slope of KEJ. ROV video imagery also identified outcrops of columnar basalts located in the middle of the landslide deposits. These are similar in appearance to those observed in the KEJ crater during previous ROV dives, indicating a possible travel distance of volcanic materials from the crater region along landslide path. High-resolution photo mosaics, bathymetry, and magnetic data acquired by ROV Hercules were used to investigate geological processes and the possible volcanic source of landslide material within the KEJ crater. Mapping in the northwestern part of the crater floor revealed distinctive regions, including (i) microbial mats, (ii) active hydrothermal vent sites; (iii) landforms curved by channelized bottom current where seafloor is outcropped; and (iv) coarse scree the distribution of which may correlate with the distance from the crater rim. Near-bottom magnetic profiles show coherent magnetic signatures with correlatable high amplitude anomalies located in the middle of the KEJ crater.

Weather Regulates Location, Timing, and Intensity of Dengue Virus Transmission between Humans and Mosquitoes.

PubMed

Campbell, Karen M; Haldeman, Kristin; Lehnig, Chris; Munayco, Cesar V; Halsey, Eric S; Laguna-Torres, V Alberto; Yagui, Martín; Morrison, Amy C; Lin, Chii-Dean; Scott, Thomas W

2015-01-01

Dengue is one of the most aggressively expanding mosquito-transmitted viruses. The human burden approaches 400 million infections annually. Complex transmission dynamics pose challenges for predicting location, timing, and magnitude of risk; thus, models are needed to guide prevention strategies and policy development locally and globally. Weather regulates transmission-potential via its effects on vector dynamics. An important gap in understanding risk and roadblock in model development is an empirical perspective clarifying how weather impacts transmission in diverse ecological settings. We sought to determine if location, timing, and potential-intensity of transmission are systematically defined by weather. We developed a high-resolution empirical profile of the local weather-disease connection across Peru, a country with considerable ecological diversity. Applying 2-dimensional weather-space that pairs temperature versus humidity, we mapped local transmission-potential in weather-space by week during 1994-2012. A binary classification-tree was developed to test whether weather data could classify 1828 Peruvian districts as positive/negative for transmission and into ranks of transmission-potential with respect to observed disease. We show that transmission-potential is regulated by temperature-humidity coupling, enabling epidemics in a limited area of weather-space. Duration within a specific temperature range defines transmission-potential that is amplified exponentially in higher humidity. Dengue-positive districts were identified by mean temperature >22°C for 7+ weeks and minimum temperature >14°C for 33+ weeks annually with 95% sensitivity and specificity. In elevated-risk locations, seasonal peak-incidence occurred when mean temperature was 26-29°C, coincident with humidity at its local maximum; highest incidence when humidity >80%. We profile transmission-potential in weather-space for temperature-humidity ranging 0-38°C and 5-100% at 1°C x 2% resolution. Local duration in limited areas of temperature-humidity weather-space identifies potential locations, timing, and magnitude of transmission. The weather-space profile of transmission-potential provides needed data that define a systematic and highly-sensitive weather-disease connection, demonstrating separate but coupled roles of temperature and humidity. New insights regarding natural regulation of human-mosquito transmission across diverse ecological settings advance our understanding of risk locally and globally for dengue and other mosquito-borne diseases and support advances in public health policy/operations, providing an evidence-base for modeling, predicting risk, and surveillance-prevention planning.

Mapping tropical dry forest height, foliage height profiles and disturbance type and age with a time series of cloud-cleared Landsat and ALI image mosaics to characterize avian habitat

Treesearch

E.H. Helmer; Thomas S. Ruzycki; Jr. Joseph M. Wunderle; Shannon Vogesser; Bonnie Ruefenacht; Charles Kwit; Thomas J. Brandeis; David N. Ewert

2010-01-01

Remote sensing of forest vertical structure is possible with lidar data, but lidar is not widely available. Here we map tropical dry forest height (RMSE=0.9 m, R2=0.84, range 0.6–7 m), and we map foliage height profiles, with a time series of Landsat and Advanced Land Imager (ALI) imagery on the island of Eleuthera, The Bahamas, substituting time for vertical canopy...

A Toposcopic Investigation of Brain Electrical Activity Induced by Motion Sickness

DTIC Science & Technology

1992-12-01

This hypothesis explains motion sickness symptoms as the body’s natural response when the infcr- mation transmitted by the eyes, the vestibular system...consisting of the summed pixel values of their respective sets. Each of these images are then converted to a map of the mean values and a map of the variances ...Statistical mapping requires a sizable normative database of maps, a signif - icant investment of resources (11:25). Location-by-location comparisons be

Stratigraphic Profiles for Selected Hanford Site Seismometer Stations and Other Locations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Last, George V.

2014-02-01

Stratigraphic profiles were constructed for eight selected Hanford Site seismometer stations, five Hanford Site facility reference locations, and seven regional three-component broadband seismometer stations. These profiles provide interpretations of the subsurface layers to support estimation of ground motions from past earthquakes, and the prediction of ground motions from future earthquakes. In most cases these profiles terminated at the top of the Wanapum Basalt, but at selected sites profiles were extended down to the top of the crystalline basement. The composite one-dimensional stratigraphic profiles were based primarily on previous interpretations from nearby boreholes, and in many cases the nearest deep boreholemore » is located kilometers away.« less

Predicting and mapping soil available water capacity in Korea.

PubMed

Hong, Suk Young; Minasny, Budiman; Han, Kyung Hwa; Kim, Yihyun; Lee, Kyungdo

2013-01-01

The knowledge on the spatial distribution of soil available water capacity at a regional or national extent is essential, as soil water capacity is a component of the water and energy balances in the terrestrial ecosystem. It controls the evapotranspiration rate, and has a major impact on climate. This paper demonstrates a protocol for mapping soil available water capacity in South Korea at a fine scale using data available from surveys. The procedures combined digital soil mapping technology with the available soil map of 1:25,000. We used the modal profile data from the Taxonomical Classification of Korean Soils. The data consist of profile description along with physical and chemical analysis for the modal profiles of the 380 soil series. However not all soil samples have measured bulk density and water content at -10 and -1500 kPa. Thus they need to be predicted using pedotransfer functions. Furthermore, water content at -10 kPa was measured using ground samples. Thus a correction factor is derived to take into account the effect of bulk density. Results showed that Andisols has the highest mean water storage capacity, followed by Entisols and Inceptisols which have loamy texture. The lowest water retention is Entisols which are dominated by sandy materials. Profile available water capacity to a depth of 1 m was calculated and mapped for Korea. The western part of the country shows higher available water capacity than the eastern part which is mountainous and has shallower soils. The highest water storage capacity soils are the Ultisols and Alfisols (mean of 206 and 205 mm, respectively). Validation of the maps showed promising results. The map produced can be used as an indication of soil physical quality of Korean soils.

Crustal structure of China from deep seismic sounding profiles

USGS Publications Warehouse

Li, S.; Mooney, W.D.

1998-01-01

More than 36,000 km of Deep Seismic Sounding (DSS) profiles have been collected in China since 1958. However, the results of these profiles are not well known in the West due to the language barrier. In this paper, we summarize the crustal structure of China with a new contour map of crustal thickness, nine representative crustal columns, and maps showing profile locations, average crustal velocity, and Pn velocity. The most remarkable aspect of the crustal structure of China is the well known 70+ km thickness of the crust of the Tibetan Plateau. The thick (45-70 km) crust of western China is separated from the thinner (30-45 km) crust of eastern China by the north-south trending seismic belt (105??E). The average crustal velocity of China ranges from 6.15 to 6.45 km/s, indicating a felsic-to-intermediate bulk crustal composition. Upper mantle (Pn) velocities are 8.0 ?? 0.2 km/s, equal to the global continental average. We interpret these results in terms of the most recent thermo-tectonic events that have modified the crust. In much of eastern China, Cenoxoic crustal extension has produced a thin crust with a low average crustal velocity, similar to western Europe and the Basin and Range Province, western USA. In western China, Mesozoic and Cenoxoic arc-continent and continent-continent collisions have led to crustal growth and thickening. Inferences on the process of crustal thickening are provided by the deep crustal velocity structure as determined by DSS profiles and other seismological studies. A high velocity (7.0-7.4 km/s) lower-crustal layer has been reported in western China only beneath the southernmost Tibetan Plateau. We identity this high-velocity layer as the cold lower crust of the subducting Indian plate. As the Indian crust is injected northward into the Tibetan lower crust, it heats and assimilates by partial melting, a process that results in a reduction in the seismic velocity of the lower crust in the central and northern Tibetan Plateau. ?? 1998 Elsevier Science B.V. All rights reserved.

Analysis of Biomass Burning Impacts on the Air Quality of El Paso, Texas in July 2016 using Ground Observations and NASA Earth Observations

NASA Astrophysics Data System (ADS)

Odwuor, A.; Kolandaivelu, K. P.; Colley, B. E.; White, E. L.

2017-12-01

Texas (TX), U.S., is surrounded by areas prone to wildfire and agricultural burning (collectively referred to as biomass burning) and smoke plumes from these fires can be driven by meteorological conditions to travel across the state, depositing a variety of pollutants. These pollutants include aerosols, which exert several negative effects on the environment and human health and are especially harmful when deposited in highly-populated metropolitan areas. In El Paso, TX, elevated atmospheric concentrations of ozone and PM 2.5 occur when aerosol-carrying biomass burning smoke plumes reach the city. One such pollution episode was identified by El Paso UTEP (CAMS 12) ground monitor on July 16th, 2016. To identify the sources of this pollution episode, this study utilized NASA Earth Observations including Terra MODIS aerosol optical depth (AOD) and CALIPSO CALIOP calibrated and geo-located vertical profiles of aerosols and clouds to perform 3-D spatial temporal plume tracking. Thermal anomaly maps from Suomi NPP VIIRS were also used in conjunction with NOAA Hybrid Single Particle Lagrangian Integrated Trajectory (HYSPLIT) Model trajectories. Results from these analyses indicated several potential source wildfires that could have contributed to the elevated pollutant concentration levels, of which the School and Black Range Complex Fires in the Gila Wilderness of New Mexico, U.S. and agricultural biomass burning in Guaymas, Mexico were identified as the main contributors. 3-D aerosol transport maps produced using Terra MODIS AOD data for the exceedance date and CALIPSO CALIOP vertical profiles for a date leading up to the exceedance further validated this result. The results of this study can be replicated for other dates in other locations where similar elevated pollutant concentration levels are observed via ground monitors. This analysis, which combined in situ data, trajectory models and remote sensing data, proves itself a valuable tool for studying air pollution events caused by biomass burning.

Use of soil moisture dynamics and patterns for the investigation of runoff generation processes with emphasis on preferential flow

NASA Astrophysics Data System (ADS)

Blume, T.; Zehe, E.; Bronstert, A.

2007-08-01

Spatial patterns as well as temporal dynamics of soil moisture have a major influence on runoff generation. The investigation of these dynamics and patterns can thus yield valuable information on hydrological processes, especially in data scarce or previously ungauged catchments. The combination of spatially scarce but temporally high resolution soil moisture profiles with episodic and thus temporally scarce moisture profiles at additional locations provides information on spatial as well as temporal patterns of soil moisture at the hillslope transect scale. This approach is better suited to difficult terrain (dense forest, steep slopes) than geophysical techniques and at the same time less cost-intensive than a high resolution grid of continuously measuring sensors. Rainfall simulation experiments with dye tracers while continuously monitoring soil moisture response allows for visualization of flow processes in the unsaturated zone at these locations. Data was analyzed at different spacio-temporal scales using various graphical methods, such as space-time colour maps (for the event and plot scale) and indicator maps (for the long-term and hillslope scale). Annual dynamics of soil moisture and decimeter-scale variability were also investigated. The proposed approach proved to be successful in the investigation of flow processes in the unsaturated zone and showed the importance of preferential flow in the Malalcahuello Catchment, a data-scarce catchment in the Andes of Southern Chile. Fast response times of stream flow indicate that preferential flow observed at the plot scale might also be of importance at the hillslope or catchment scale. Flow patterns were highly variable in space but persistent in time. The most likely explanation for preferential flow in this catchment is a combination of hydrophobicity, small scale heterogeneity in rainfall due to redistribution in the canopy and strong gradients in unsaturated conductivities leading to self-reinforcing flow paths.

Use of soil moisture dynamics and patterns at different spatio-temporal scales for the investigation of subsurface flow processes

NASA Astrophysics Data System (ADS)

Blume, T.; Zehe, E.; Bronstert, A.

2009-07-01

Spatial patterns as well as temporal dynamics of soil moisture have a major influence on runoff generation. The investigation of these dynamics and patterns can thus yield valuable information on hydrological processes, especially in data scarce or previously ungauged catchments. The combination of spatially scarce but temporally high resolution soil moisture profiles with episodic and thus temporally scarce moisture profiles at additional locations provides information on spatial as well as temporal patterns of soil moisture at the hillslope transect scale. This approach is better suited to difficult terrain (dense forest, steep slopes) than geophysical techniques and at the same time less cost-intensive than a high resolution grid of continuously measuring sensors. Rainfall simulation experiments with dye tracers while continuously monitoring soil moisture response allows for visualization of flow processes in the unsaturated zone at these locations. Data was analyzed at different spacio-temporal scales using various graphical methods, such as space-time colour maps (for the event and plot scale) and binary indicator maps (for the long-term and hillslope scale). Annual dynamics of soil moisture and decimeter-scale variability were also investigated. The proposed approach proved to be successful in the investigation of flow processes in the unsaturated zone and showed the importance of preferential flow in the Malalcahuello Catchment, a data-scarce catchment in the Andes of Southern Chile. Fast response times of stream flow indicate that preferential flow observed at the plot scale might also be of importance at the hillslope or catchment scale. Flow patterns were highly variable in space but persistent in time. The most likely explanation for preferential flow in this catchment is a combination of hydrophobicity, small scale heterogeneity in rainfall due to redistribution in the canopy and strong gradients in unsaturated conductivities leading to self-reinforcing flow paths.

S-World: A high resolution global soil database for simulation modelling (Invited)

NASA Astrophysics Data System (ADS)

Stoorvogel, J. J.

2013-12-01

There is an increasing call for high resolution soil information at the global level. A good example for such a call is the Global Gridded Crop Model Intercomparison carried out within AgMIP. While local studies can make use of surveying techniques to collect additional techniques this is practically impossible at the global level. It is therefore important to rely on legacy data like the Harmonized World Soil Database. Several efforts do exist that aim at the development of global gridded soil property databases. These estimates of the variation of soil properties can be used to assess e.g., global soil carbon stocks. However, they do not allow for simulation runs with e.g., crop growth simulation models as these models require a description of the entire pedon rather than a few soil properties. This study provides the required quantitative description of pedons at a 1 km resolution for simulation modelling. It uses the Harmonized World Soil Database (HWSD) for the spatial distribution of soil types, the ISRIC-WISE soil profile database to derive information on soil properties per soil type, and a range of co-variables on topography, climate, and land cover to further disaggregate the available data. The methodology aims to take stock of these available data. The soil database is developed in five main steps. Step 1: All 148 soil types are ordered on the basis of their expected topographic position using e.g., drainage, salinization, and pedogenesis. Using the topographic ordering and combining the HWSD with a digital elevation model allows for the spatial disaggregation of the composite soil units. This results in a new soil map with homogeneous soil units. Step 2: The ranges of major soil properties for the topsoil and subsoil of each of the 148 soil types are derived from the ISRIC-WISE soil profile database. Step 3: A model of soil formation is developed that focuses on the basic conceptual question where we are within the range of a particular soil property at a particular location given a specific soil type. The soil properties are predicted for each grid cell based on the soil type, the corresponding ranges of soil properties, and the co-variables. Step 4: Standard depth profiles are developed for each of the soil types using the diagnostic criteria of the soil types and soil profile information from the ISRIC-WISE database. The standard soil profiles are combined with the the predicted values for the topsoil and subsoil yielding unique soil profiles at each location. Step 5: In a final step, additional soil properties are added to the database using averages for the soil types and pedo-transfer functions. The methodology, denominated S-World (Soils of the World), results in readily available global maps with quantitative pedon data for modelling purposes. It forms the basis for the Global Gridded Crop Model Intercomparison carried out within AgMIP.

Framework for the mapping of the monthly average daily solar radiation using an advanced case-based reasoning and a geostatistical technique.

PubMed

Lee, Minhyun; Koo, Choongwan; Hong, Taehoon; Park, Hyo Seon

2014-04-15

For the effective photovoltaic (PV) system, it is necessary to accurately determine the monthly average daily solar radiation (MADSR) and to develop an accurate MADSR map, which can simplify the decision-making process for selecting the suitable location of the PV system installation. Therefore, this study aimed to develop a framework for the mapping of the MADSR using an advanced case-based reasoning (CBR) and a geostatistical technique. The proposed framework consists of the following procedures: (i) the geographic scope for the mapping of the MADSR is set, and the measured MADSR and meteorological data in the geographic scope are collected; (ii) using the collected data, the advanced CBR model is developed; (iii) using the advanced CBR model, the MADSR at unmeasured locations is estimated; and (iv) by applying the measured and estimated MADSR data to the geographic information system, the MADSR map is developed. A practical validation was conducted by applying the proposed framework to South Korea. It was determined that the MADSR map developed through the proposed framework has been improved in terms of accuracy. The developed MADSR map can be used for estimating the MADSR at unmeasured locations and for determining the optimal location for the PV system installation.

Deformation and evolution of an experimental drainage network subjected to oblique deformation: Insight from chi-maps

NASA Astrophysics Data System (ADS)

Guerit, Laure; Goren, Liran; Dominguez, Stéphane; Malavieille, Jacques; Castelltort, Sébastien

2017-04-01

The morphology of a fluvial landscape reflects a balance between its own dynamics and external forcings, and therefore holds the potential to reveal local or large-scale tectonic patterns. Commonly, particular focus has been cast on the longitudinal profiles of rivers as they constitute sensitive recorders of vertical movements, that can be recovered based on models of bedrock incision. However, several recent studies have suggested that maps of rescaled distance along channel called chi (χ), derived from the commonly observed power law relation between the slope and the drainage area , could reveal transient landscapes in state of reorganization of basin geometry and location of water divides. If river networks deforms in response to large amount of distributed strain, then they might be used to reconstruct the mode and rate of horizontal deformation away from major active structures through the use of the parameter χ. To explore how streams respond to tectonic horizontal deformation, we develop an experimental model for studying river pattern evolution over a doubly-vergent orogenic wedge growing in a context of oblique convergence. We use a series of sprinklers located about the experimental table to activate erosion, sediment transport and river development on the surface of the experimental wedge. At the end of the experiment, the drainage network is statistically rotated clockwise, confirming that rivers can record the distribution of motion along the wedge. However, the amount of rotation does not match with the imposed deformation, and thus we infer that stream networks are not purely passive markers. Based on the comparison between the observed evolution of the fluvial system and the predictions made from χ maps, we show that the plan-view morphology of the streams results from the competition between the imposed deformation and fluvial processes of drainage reorganization.

Analysis of ELF Radio Atmospherics Radiated by Rocket-Triggered Lightning

NASA Astrophysics Data System (ADS)

Dupree, N. A.; Moore, R. C.; Pilkey, J. T.; Uman, M. A.; Jordan, D. M.; Caicedo, J. A.; Hare, B.; Ngin, T. K.

2014-12-01

Experimental observations of ELF radio atmospherics produced by rocket-triggered lightning flashes are used to analyze Earth-ionosphere waveguide excitation and propagation characteristics. Rocket-triggered lightning experiments are performed at the International Center for Lightning Research and Testing (ICLRT) located at Camp Blanding, Florida. Long-distance ELF observations are performed in California, Greenland, and Antarctica. The lightning current waveforms directly measured at the base of the lightning channel (at the ICLRT) along with pertinent Lightning Mapping Array (LMA) data are used together with the Long Wavelength Propagation Capability (LWPC) code to predict the radio atmospheric (sferic) waveform observed at the receiver locations under various ionospheric conditions. We identify fitted exponential electron density profiles that accurately describe the observed propagation delays, phase delays, and signal amplitudes. The ability to infer ionospheric characteristics using distant ELF observations greatly enhances ionospheric remote sensing capabilities, especially in regard to interpreting observations of transient luminous events (TLEs) and other ionospheric effects associated with lightning.

Detection of underground voids in Tahura Japan Cave Bandung using ground penetrating radar

NASA Astrophysics Data System (ADS)

Azimmah, Azizatun; Widodo

2017-07-01

The detection of underground voids is important due to their effects on subsidence higher risk. Ground Penetrating Radar is one of geophysical electromagnetic methods that has been proven to be able to detect and locate any void beneath the surface effectively at a shallow depth. This method uses the contrasts of dielectric properties, resistivity and magnetic permeability to investigate and map what lies beneath the surface. Hence, this research focused on how GPR could be applied for detecting underground voids at the site of investigation, The Japan Cave in Taman Hutan Raya located in Dago, Bandung, Indonesia. A 100 MHz GPR shielded antenna frequency were used to measure three >80 meters long measurement lines. These three GPR profiles were positioned on the surface above the Japan Cave. The radargram results showed existences of different amplitude regions proven to be the air-filled cavities, at a depth of <10 meters, and interfaces between the underneath layers.

Geomagnetic and Geoelectric Prospection on a Roman Iron Production Facility in Hüttenberg, Austria (Ferrum Noricum)

PubMed Central

Walach, Georg; Scholger, Robert; Cech, Brigitte

2011-01-01

Geophysical prospection has been applied in the Hüttenberg area (Carinthia, Austria), where important parts of the Roman iron production in the province of Noricum between the first century bc and the fourth century ad are located. A combination of geomagnetic, geoelectric and electromagnetic measurements at different scales yielded information about the extent of the industrial complex and the location of yet undiscovered subsurface monuments in the surrounding area of the Semlach-Eisner archaeological site. The vertical and lateral extension of a slag deposit from the smelting activities could be determined by means of geomagnetic mapping and multi-electrode geoelectric profiles. For the prediction of the continuation of walls in the subsurface outside the excavated area, the total horizontal derivative of the magnetic anomaly as well as geoelectric measurements were most suitable, whereas electromagnetic measurements were not successful owing to the high conductivity of widely spread pieces of slag. Copyright © 2011 John Wiley & Sons, Ltd. PMID:24436629

Profiling a Mind Map User: A Descriptive Appraisal

ERIC Educational Resources Information Center

Tucker, Joanne M.; Armstrong, Gary R.; Massad, Victor J.

2010-01-01

Whether manually or through the use of software, a non-linear information organization framework known as mind mapping offers an alternative method for capturing thoughts, ideas and information to linear thinking modes such as outlining. Mind mapping is brainstorming, organizing, and problem solving. This paper examines mind mapping techniques,…

Shallow P- and S-wave velocities and site resonances in the St. Louis region, Missouri-Illinois

USGS Publications Warehouse

Williams, R.A.; Odum, J.K.; Stephenson, W.J.; Herrmann, Robert B.

2007-01-01

As part of the seismic hazard-mapping efforts in the St. Louis metropolitan area we determined the compressional and shear-wave velocities (Vp and Vs) to about a 40-m depth at 17 locations in this area. The Vs measurements were made using high-resolution seismic refraction and reflection methods. We find a clear difference in the Vs profiles between sites located on the river floodplains and those located in the upland urban areas of St. Louis. Vs30 (average Vs to 30-m depth) values in floodplain areas range from 200 to 290 m/s (NEHRP category D) and contrast with sites on the upland areas of St. Louis, which have Vs30 values ranging from 410 to 785 m/s (NEHRP categories C and B). The lower Vs30 values and earthquake recordings in the floodplains suggest a greater potential for stronger and more prolonged ground shaking in an earthquake. Spectral analysis of a M3.6 earthquake recorded on the St. Louis-area ANSS seismograph network indicates stronger shaking and potentially damaging S-wave resonant frequencies at NEHRP category D sites compared to ground motions at a rock site located on the Saint Louis University campus. ?? 2007, Earthquake Engineering Research Institute.

Measuring historic water levels of Lake Balaton and tributary wetlands using georeferenced maps

NASA Astrophysics Data System (ADS)

Zlinszky, A.

2009-04-01

Lake Balaton is a large and relatively shallow lake located in western Hungary. The lake is joined by small wetlands on the north shore and larger water-filled valleys on the south separated by and elevated sand bar. These wetlands are assumed to have been connected with Lake Balaton before the water level was artificially lowered in 1893. No regular measurements of the water level of the lake or these wetlands were carried out before the draining of the lake. Most of the wetlands were completely isolated from the water system of the lake after the water level change as roads, railway and holiday homes were built. The low valleys of the southern shore still hold many fishponds, swamps and wet meadows, which are important sanctuaries for rare wetland species, and are often less disturbed than the lake, which is a popular holiday resort. Hydrologic restoration of these wetlands is only possible if accurate information exists on the original, natural state. The 1776 Krieger-map and the first military survey (1782-1785) are the most accurate known maps of the original state of the Lake Balaton area. These maps were surveyed using triangulation and leveling, and are accurate enough to be compared with the present-day situation. Some of the depicted buildings and landmarks still survive and can be used as control points for georeferencing and correcting these maps. Since the bathymetry of the lake and the topography of the surrounding countryside have hardly changed, existing digital elevation models of the present-day relief could be compared to these georeferenced maps. The elevation profile of the lake shore and wetland borders can be calculated by tracing these lines on a Digital Elevation Model. The shore area of Lake Balaton has been filled in and changed, so present-day land topography can not be used to estimate the water level from the elevation profile of the shore line. However, the Krieger-map also shows bathymetric contours, and previous studies have shown that the topography of the lake floor has not changed measurably in the last hundred years. The bathymetric contours of Lake Balaton depicted on the georeferenced Krieger-map were digitized and overlain on the present-day DEM of the lake floor. The elevation profile of these lines was used to calculate the original elevation of the water level of the lake with the accuracy of one meter. The height of the water table around the lake depends closely on the water level of the lake, but wetlands can retain water and thus sustain a higher water table in the tributary valleys than in the lake itself. In order to measure the elevation of the water table around the lake, the borders of the water-logged areas on the southern shore of the lake were also digitized from the sheets of the First Military Survey and traced on a DEM of the hills on the southern side of the lake. The elevation of the water level in these wetlands was calculated based on these profiles. The water level in some valleys adjoining the lake is significantly higher than the water level of the lake itself, which shows that the water balance of these wetlands was mostly independent of the fluctuation of the lake. Some other large wetlands have borders that are in the same elevation as the shores of the lake itself, which shows that these wetlands are in close connection with the lake. The mapping of these historic wetland properties provides a valuable guide for future habitat restoration efforts.

MyEnvironment | US Environmental Protection Agency

EPA Pesticide Factsheets

The MyEnvironment search application is designed to provide a cross-section of environmental information based on the users location. Environmental data is displayed at local community locations. EPA Environmental data displayed within maps and reports. Results include: Environmental Data, Enviromental Map, EPA Data, EPA Map, Air, Water, Land, Health, Pollution, Climate Change, Permits, Statistics, Superfund, Brownfields, Hazardous Waste, Toxic, Releases, Cleanups, Community, Ecological Conditions

MyEnvironment | Envirofacts | US EPA

EPA Pesticide Factsheets

2017-09-22

The MyEnvironment search application is designed to provide a cross-section of environmental information based on the users location. Environmental data is displayed at local community locations. EPA Environmental data displayed within maps and reports. Results include: Environmental Data, Enviromental Map, EPA Data, EPA Map, Air, Water, Land, Health, Pollution, Climate Change, Permits, Statistics, Superfund, Brownfields, Hazardous Waste, Toxic, Releases, Cleanups, Community, Ecological Conditions

Number Prompts Left-to-Right Spatial Mapping in Toddlerhood

ERIC Educational Resources Information Center

McCrink, Koleen; Perez, Jasmin; Baruch, Erica

2017-01-01

Toddlers performed a spatial mapping task in which they were required to learn the location of a hidden object in a vertical array and then transpose this location information 90° to a horizontal array. During the vertical training, they were given (a) no labels, (b) alphabetical labels, or (c) numerical labels for each potential spatial location.…

Continental Scale Vegetation Structure Mapping Using Field Calibrated Landsat, ALOS Palsar And GLAS ICESat

NASA Astrophysics Data System (ADS)

Scarth, P.; Phinn, S. R.; Armston, J.; Lucas, R.

2015-12-01

Vertical plant profiles are important descriptors of canopy structure and are used to inform models of biomass, biodiversity and fire risk. In Australia, an approach has been developed to produce large area maps of vertical plant profiles by extrapolating waveform lidar estimates of vertical plant profiles from ICESat/GLAS using large area segmentation of ALOS PALSAR and Landsat satellite image products. The main assumption of this approach is that the vegetation height profiles are consistent across the segments defined from ALOS PALSAR and Landsat image products. More than 1500 field sites were used to develop an index of fractional cover using Landsat data. A time series of the green fraction was used to calculate the persistent green fraction continuously across the landscape. This was fused with ALOS PALSAR L-band Fine Beam Dual polarisation 25m data and used to segment the Australian landscapes. K-means clustering then grouped the segments with similar cover and backscatter into approximately 1000 clusters. Where GLAS-ICESat footprints intersected these clusters, canopy profiles were extracted and aggregated to produce a mean vertical vegetation profile for each cluster that was used to derive mean canopy and understorey height, depth and density. Due to the large number of returns, these retrievals are near continuous across the landscape, enabling them to be used for inventory and modelling applications. To validate this product, a radiative transfer model was adapted to map directional gap probability from airborne waveform lidar datasets to retrieve vertical plant profiles Comparison over several test sites show excellent agreement and work is underway to extend the analysis to improve national biomass mapping. The integration of the three datasets provide options for future operational monitoring of structure and AGB across large areas for quantifying carbon dynamics, structural change and biodiversity.

Mapping Asian anthropogenic emissions of non-methane volatile organic compounds to multiple chemical mechanisms

NASA Astrophysics Data System (ADS)

Li, M.; Zhang, Q.; Streets, D. G.; He, K. B.; Cheng, Y. F.; Emmons, L. K.; Huo, H.; Kang, S. C.; Lu, Z.; Shao, M.; Su, H.; Yu, X.; Zhang, Y.

2014-06-01

An accurate speciation mapping of non-methane volatile organic compounds (NMVOC) emissions has an important impact on the performance of chemical transport models (CTMs) in simulating ozone mixing ratios and secondary organic aerosols. Taking the INTEX-B Asian NMVOC emission inventory as the case, we developed an improved speciation framework to generate model-ready anthropogenic NMVOC emissions for various gas-phase chemical mechanisms commonly used in CTMs in this work, by using an explicit assignment approach and updated NMVOC profiles. NMVOC profiles were selected and aggregated from a wide range of new measurements and the SPECIATE database v.4.2. To reduce potential uncertainty from individual measurements, composite profiles were developed by grouping and averaging source profiles from the same category. The fractions of oxygenated volatile organic compounds (OVOC) were corrected during the compositing process for those profiles which used improper sampling and analyzing methods. Emissions of individual species were then lumped into species in different chemical mechanisms used in CTMs by applying mechanism-dependent species mapping tables, which overcomes the weakness of inaccurate mapping in previous studies. Emission estimates for individual NMVOC species differ between one and three orders of magnitude for some species when different sets of profiles are used, indicating that source profile is the most important source of uncertainties of individual species emissions. However, those differences are diminished in lumped species as a result of the lumping in the chemical mechanisms. Gridded emissions for eight chemical mechanisms at 30 min × 30 min resolution as well as the auxiliary data are available at http://mic.greenresource.cn/intex-b2006. The framework proposed in this work can be also used to develop speciated NMVOC emissions for other regions.

Mapping Asian anthropogenic emissions of non-methane volatile organic compounds to multiple chemical mechanisms

NASA Astrophysics Data System (ADS)

Li, M.; Zhang, Q.; Streets, D. G.; He, K. B.; Cheng, Y. F.; Emmons, L. K.; Huo, H.; Kang, S. C.; Lu, Z.; Shao, M.; Su, H.; Yu, X.; Zhang, Y.

2013-12-01

An accurate speciation mapping of non-methane volatile organic compounds (NMVOC) emissions has an important impact on the performance of chemical transport models (CTMs) in simulating ozone mixing ratios and secondary organic aerosols. In this work, we developed an improved speciation framework to generate model-ready anthropogenic Asian NMVOC emissions for various gas-phase chemical mechanisms commonly used in CTMs by using an explicit assignment approach and updated NMVOC profiles, based on the total NMVOC emissions in the INTEX-B Asian inventory for the year 2006. NMVOC profiles were selected and aggregated from a wide range of new measurements and the SPECIATE database. To reduce potential uncertainty from individual measurements, composite profiles were developed by grouping and averaging source profiles from the same category. The fractions of oxygenated volatile organic compounds (OVOC) were corrected during the compositing process for those profiles which used improper sampling and analyzing methods. Emissions of individual species were then lumped into species in different chemical mechanisms used in CTMs by applying mechanism-dependent species mapping tables, which overcomes the weakness of inaccurate mapping in previous studies. Gridded emissions for eight chemical mechanisms are developed at 30 min × 30 min resolution using various spatial proxies and are provided through the website: http://mic.greenresource.cn/intex-b2006. Emission estimates for individual NMVOC species differ between one and three orders of magnitude for some species when different sets of profiles are used, indicating that source profile is the most important source of uncertainties of individual species emissions. However, those differences are diminished in lumped species as a result of the lumping in the chemical mechanisms.

Developing Land Use Land Cover Maps for the Lower Mekong Basin to Aid SWAT Hydrologic Modeling

NASA Astrophysics Data System (ADS)

Spruce, J.; Bolten, J. D.; Srinivasan, R.

2017-12-01

This presentation discusses research to develop Land Use Land Cover (LULC) maps for the Lower Mekong Basin (LMB). Funded by a NASA ROSES Disasters grant, the main objective was to produce updated LULC maps to aid the Mekong River Commission's (MRC's) Soil and Water Assessment Tool (SWAT) hydrologic model. In producing needed LULC maps, temporally processed MODIS monthly NDVI data for 2010 were used as the primary data source for classifying regionally prominent forest and agricultural types. The MODIS NDVI data was derived from processing MOD09 and MYD09 8-day reflectance data with the Time Series Product Tool, a custom software package. Circa 2010 Landsat multispectral data from the dry season were processed into top of atmosphere reflectance mosaics and then classified to derive certain locally common LULC types, such as urban areas and industrial forest plantations. Unsupervised ISODATA clustering was used to derive most LULC classifications. GIS techniques were used to merge MODIS and Landsat classifications into final LULC maps for Sub-Basins (SBs) 1-8 of the LMB. The final LULC maps were produced at 250-meter resolution and delivered to the MRC for use in SWAT modeling for the LMB. A map accuracy assessment was performed for the SB 7 LULC map with 14 classes. This assessment was performed by comparing random locations for sampled LULC types to geospatial reference data such as Landsat RGBs, MODIS NDVI phenologic profiles, high resolution satellite data from Google Map/Earth, and other reference data from the MRC (e.g., crop calendars). LULC accuracy assessment results for SB 7 indicated an overall agreement to reference data of 81% at full scheme specificity. However, by grouping 3 deciduous forest classes into 1 class, the overall agreement improved to 87%. The project enabled updated LULC maps, plus more specific rice types were classified compared to the previous LULC maps. The LULC maps from this project should improve the use of SWAT for modeling hydrology in the LMB, plus improve water and disaster management in a region vulnerable to flooding, droughts, and anthropogenic change (e.g., from dam building and other LULC change).

Optimizing spectral wave estimates with adjoint-based sensitivity maps

NASA Astrophysics Data System (ADS)

Orzech, Mark; Veeramony, Jay; Flampouris, Stylianos

2014-04-01

A discrete numerical adjoint has recently been developed for the stochastic wave model SWAN. In the present study, this adjoint code is used to construct spectral sensitivity maps for two nearshore domains. The maps display the correlations of spectral energy levels throughout the domain with the observed energy levels at a selected location or region of interest (LOI/ROI), providing a full spectrum of values at all locations in the domain. We investigate the effectiveness of sensitivity maps based on significant wave height ( H s ) in determining alternate offshore instrument deployment sites when a chosen nearshore location or region is inaccessible. Wave and bathymetry datasets are employed from one shallower, small-scale domain (Duck, NC) and one deeper, larger-scale domain (San Diego, CA). The effects of seasonal changes in wave climate, errors in bathymetry, and multiple assimilation points on sensitivity map shapes and model performance are investigated. Model accuracy is evaluated by comparing spectral statistics as well as with an RMS skill score, which estimates a mean model-data error across all spectral bins. Results indicate that data assimilation from identified high-sensitivity alternate locations consistently improves model performance at nearshore LOIs, while assimilation from low-sensitivity locations results in lesser or no improvement. Use of sub-sampled or alongshore-averaged bathymetry has a domain-specific effect on model performance when assimilating from a high-sensitivity alternate location. When multiple alternate assimilation locations are used from areas of lower sensitivity, model performance may be worse than with a single, high-sensitivity assimilation point.

Calculation of catalyst crust thickness from full elemental laser-induced breakdown spectroscopy images

NASA Astrophysics Data System (ADS)

Sorbier, L.; Trichard, F.; Moncayo, S.; Lienemann, C. P.; Motto-Ros, V.

2018-01-01

We propose a methodology to compute the crust thickness of an element in an egg-shell catalyst from a two-dimensional elemental map. The methodology handles two important catalyst shapes: infinite extrudates of arbitrary section and spheres. The methodology is validated with synthetic analytical profiles on simple shapes (cylinder and sphere). Its relative accuracy is shown close to few percent with a decrease inversely proportional to the square root of the number of sampled pixels. The crust thickness obtained by this method from quantitative Pd maps acquired by laser-induced breakdown spectroscopy are comparable with values obtained from electron-probe microanalysis profiles. Some discrepancies are found and are explained by the heterogeneity of the crust thickness within a grain. As a full map is more representative than a single profile, fast mapping and the methodology exposed in this paper are expected to become valuable tools for the development of new generations of egg-shell deposited catalysts.

Gold occurrences in the Greenville 1 degree by 2 degrees Quadrangle, South Carolina, Georgia, and North Carolina

USGS Publications Warehouse

D'Agostino, John P.; Mason, George T.; Zupan, Alan J.W.; Maybin, Arthur H.; German, Jerry M.; Abrams, Charlotte E.

1994-01-01

All of the gold mines, prospects, placers, and occurrences known in the Greenville 1° x 2° quadrangle are tabulated in this report. The table lists, in consecutive order by county (fig. 1), the map number of each feature, which is located either on the accompanying Greenville 1° x 2° quadrangle map or figure 2. The known name of the feature; the 7.5' topographic map on the which the gold site is located (if known, within 25 ft or 7.6 m), the Universal Transverse Mercator (UTM) northing and easting grid coordinates from the appropriate 7.5' topographic map; the commodity; remarks; and references are also listed. Some locations are known, but many sites are not verified and their locations are only approximate. References are listed in References Cited and referred to by number to save space.

Posture Affects How Robots and Infants Map Words to Objects

PubMed Central

Morse, Anthony F.; Benitez, Viridian L.; Belpaeme, Tony; Cangelosi, Angelo; Smith, Linda B.

2015-01-01

For infants, the first problem in learning a word is to map the word to its referent; a second problem is to remember that mapping when the word and/or referent are again encountered. Recent infant studies suggest that spatial location plays a key role in how infants solve both problems. Here we provide a new theoretical model and new empirical evidence on how the body – and its momentary posture – may be central to these processes. The present study uses a name-object mapping task in which names are either encountered in the absence of their target (experiments 1–3, 6 & 7), or when their target is present but in a location previously associated with a foil (experiments 4, 5, 8 & 9). A humanoid robot model (experiments 1–5) is used to instantiate and test the hypothesis that body-centric spatial location, and thus the bodies’ momentary posture, is used to centrally bind the multimodal features of heard names and visual objects. The robot model is shown to replicate existing infant data and then to generate novel predictions, which are tested in new infant studies (experiments 6–9). Despite spatial location being task-irrelevant in this second set of experiments, infants use body-centric spatial contingency over temporal contingency to map the name to object. Both infants and the robot remember the name-object mapping even in new spatial locations. However, the robot model shows how this memory can emerge –not from separating bodily information from the word-object mapping as proposed in previous models of the role of space in word-object mapping – but through the body’s momentary disposition in space. PMID:25785834

Geophysical model of the Cu-Mo porphyry ore deposit at Copper Flat Mine, Hillsboro, Sierra County, New Mexico

NASA Astrophysics Data System (ADS)

Gutierrez, Adrian Emmanuel Gutierrez

A 3D gravity model of the Copper Flat Mine was performed as part of the exploration of new resources in at the mine. The project is located in the Las Animas Mining District in Sierra County, New Mexico. The mine has been producing ore since 1877 and is currently owned by the New Mexico Copper Corporation, which plans o bringing the closed copper mine back into production with innovation and a sustainable approach to mining development. The Project is located on the Eastern side of the Arizona-Sonora-New Mexico porphyry copper Belt of Cretaceous age. Copper Flat is predominantly a Cretaceous age stratovolcano composed mostly of quartz monzonite. The quartz monzonite was intruded by a block of andesite alter which a series of latite dikes creating veining along the topography where the majority of the deposit. The Copper Flat deposit is mineralized along a breccia pipe where the breccia is the result of auto-brecciation due to the pore pressure. There have been a number of geophysical studies conducted at the site. The most recent survey was a gravity profile on the area. The purpose of the new study is the reinterpretation of the IP Survey and emphasizes the practical use of the gravity geophysical method in evaluating the validity of the previous survey results. The primary method used to identify the deposit is gravity in which four Talwani models were created in order to created a 3D model of the ore body. The Talwani models have numerical integration approaches that were used to divide every model into polygons. The profiles were sectioned into polygons; each polygon was assigning a specific density depending on the body being drawn. Three different gridding techniques with three different filtering methods were used producing ten maps prior to the modeling, these maps were created to establish the best map to fit the models. The calculation of the polygons used an exact formula instead of the numerical integration of the profile made with a Talwani approach. A least squared comparison between the calculated and observed gravity is used to determine the best fitting gravity vectors and the best susceptibility for the assemblage of polygonal prisms. The survey is expected to identify the geophysical anomalies found at the Copper Flat deposit in order to identify the alteration that surrounds that part of the ore body. The understanding of the anomalies needs to be reevaluated in order to have a sharper model of Copper Flat, and to understand the relations of the different structures that shaped this copper porphyry deposit.

Isotopic ages of rocks in the northern Front Range, Colorado

USGS Publications Warehouse

Wilson, Anna B.; Bryant, Bruce

2006-01-01

These maps, and the tables that accompany them, are a compilation of isotopic age determinations of rocks and minerals in four 1:100,000 quadrangles in the northern and central Front Range, Colorado. Phanerozoic (primarily Tertiary and Cretaceous) age data are shown on one map; Proterozoic data are on the other. A sample location map is included for ease of matching specific localities and data in the tables to the maps. Several records in the tables were not included in the maps because either there were ambiguous dates or lack of location precluded accurate plotting.

The South Scandinavian crust: Structural complexities from seismic reflection and refraction profiling

NASA Astrophysics Data System (ADS)

Kinck, J. J.; Husebye, E. S.; Lund, C.-E.

1991-04-01

Pioneering work on mapping the Scandinavian crust commenced in the early 1960s and since then numerous profiling surveys have been undertaken, particularly as part of the on-going EUGENO-S project. However, the most significant contribution to mapping crustal structural details came from the M.V. Mobil Search cruises in the Skagerrak and off the West coast of Norway (16 s TWT reflection profiling). All past and present crustal profiling results have been integrated to produce detailed maps of Moho depths and crustal thicknesses for South Scandinavia. The thinnest crust is found in the North Sea and Skagerrak (approximately 20 km), while East-central Sweden features very thick crust (approximately 50 km). Other interesting features are the apparent correlation between crustal thinning and sedimentation/subsidence, magmatic activity, earthquake occurrences and the tectonic age of the crust. Moho depths and the crustal thicknesses clearly reflect the tectonic evolution and the present structural features of the region investigated.

A 16 kb naturally occurring genomic deletion including mce and PPE genes in Mycobacterium avium subspecies paratuberculosis isolates from goats with Johne's disease.

PubMed

Castellanos, Elena; Aranaz, Alicia; de Juan, Lucia; Dominguez, Lucas; Linedale, Richard; Bull, Tim J

2012-09-14

In this study we characterise the genomic and transcriptomic variability of a natural deletion strain of Mycobacterium avium subspecies paratuberculosis (MAP) prevalent in Spanish Guadarrama goats. Using a pan-genome microarray including MAP and M. avium subspecies hominissuis 104 genomes (MAPAC) we demonstrate the genotype to be MAP Type II with a single deletion of 19 contiguous ORFs (16 kb) including a complete mammalian cell entry (mce7_1) operon and adjacent proline-glutamic acid (PE)/proline-proline-glutamic acid (PPE) genes. A deletion specific PCR test was developed and a subsequent screening identified four goat herds infected with the variant strain. Each was located in central Spain and showed epidemiological links suggestive of transmission between herds. A majority of animals infected with the variant manifested a paucibacillary form of the disease. Comparisons between virulent complete genome compliment strains isolated from multibacillary diseased goats and the MAP variant strain during entry into activated macrophages demonstrated an increased sensitivity in the variant to intracellular killing in human and ovine macrophages. As PPE and mce genes are associated with mycobacterial virulence and pathogenesis we investigated the interplay of these gene sets during cell entry using the MAPAC array. This showed significant differential transcriptome profiles compared to full genome complement MAP controls that included changes in other undeleted mce operons and PE/PPE genes, esx-like signalling operons and stress response/fatty acid metabolism pathways. This strain represents the first report of a MAP Type II genotype with significant natural genomic deletions which remains able to cause disease and is transmissible in goats. Copyright © 2012 Elsevier B.V. All rights reserved.

Atrial Fibrillation Ablation Guided by a Novel Nonfluoroscopic Navigation System.

PubMed

Ballesteros, Gabriel; Ramos, Pablo; Neglia, Renzo; Menéndez, Diego; García-Bolao, Ignacio

2017-09-01

Rhythmia is a new nonfluoroscopic navigation system that is able to create high-density electroanatomic maps. The aim of this study was to describe the acute outcomes of atrial fibrillation (AF) ablation guided by this system, to analyze the volume provided by its electroanatomic map, and to describe its ability to locate pulmonary vein (PV) reconnection gaps in redo procedures. This observational study included 62 patients who underwent AF ablation with Rhythmia compared with a retrospective cohort who underwent AF ablation with a conventional nonfluoroscopic navigation system (Ensite Velocity). The number of surface electrograms per map was significantly higher in Rhythmia procedures (12 125 ± 2826 vs 133 ± 21 with Velocity; P < .001), with no significant differences in the total procedure time. The Orion catheter was placed for mapping in 99.5% of PV (95.61% in the control group with a conventional circular mapping catheter; P = .04). There were no significant differences in the percentage of PV isolation between the 2 groups. In redo procedures, an ablation gap could be identified on the activation map in 67% of the reconnected PV (40% in the control group; P = .042). The measured left atrial volume was lower than that calculated by computed tomography (109.3 v 15.2 and 129.9 ± 13.2 mL, respectively; P < .001). There were no significant differences in the number of complications. The Rhythmia system is effective for AF ablation procedures, with procedure times and safety profiles similar to conventional nonfluoroscopic navigation systems. In redo procedures, it appears to be more effective in identifying reconnected PV conduction gaps. Copyright © 2016 Sociedad Española de Cardiología. Published by Elsevier España, S.L.U. All rights reserved.

PERSEUS QC: preparing statistic data sets

NASA Astrophysics Data System (ADS)

Belokopytov, Vladimir; Khaliulin, Alexey; Ingerov, Andrey; Zhuk, Elena; Gertman, Isaac; Zodiatis, George; Nikolaidis, Marios; Nikolaidis, Andreas; Stylianou, Stavros

2017-09-01

The Desktop Oceanographic Data Processing Module was developed for visual analysis of interdisciplinary cruise measurements. The program provides the possibility of data selection based on different criteria, map plotting, sea horizontal sections, and sea depth vertical profiles. The data selection in the area of interest can be specified according to a set of different physical and chemical parameters complimented by additional parameters, such as the cruise number, ship name, and time period. The visual analysis of a set of vertical profiles in the selected area allows to determine the quality of the data, their location and the time of the in-situ measurements and to exclude any questionable data from the statistical analysis. For each selected set of profiles, the average vertical profile, the minimal and maximal values of the parameter under examination and the root mean square (r.m.s.) are estimated. These estimates are compared with the parameter ranges, set for each sub-region by MEDAR/MEDATLAS-II and SeaDataNet2 projects. In the framework of the PERSEUS project, certain parameters which lacked a range were calculated from scratch, while some of the previously used ranges were re-defined using more comprehensive data sets based on SeaDataNet2, SESAME and PERSEUS projects. In some cases we have used additional sub- regions to redefine the ranges ore precisely. The recalculated ranges are used to improve the PERSEUS Data Quality Control.

Surficial geologic maps along the riparian zone of the Animas River and its headwater tributaries, Silverton to Durango, Colorado, with upper Animas River watershed gradient profiles

USGS Publications Warehouse

Blair, R.W.; Yager, D.B.; Church, S.E.

2002-01-01

This product consists of Adobe Acrobat .PDF format documents for 10 surficial geologic strip maps along the Animas River watershed from its major headwater tributaries, south to Durango, Colorado. The Animas River originates in the San Juan Mountains north of the historic mining town of Silverton, Colorado. The surficial geologic maps identify surficial deposits, such as flood-plain and terrace gravels, alluvial fans, glacial till, talus, colluvium, landslides, and bogs. Sixteen primary units were mapped that included human-related deposits and structures, eight alluvial, four colluvial, one glacial, travertine deposits, and undifferentiated bedrock. Each of the surficial geologic strip maps has .PDF links to surficial geology photographs, which enable the user to take a virtual tour of these deposits. Geochemical data collected from mapped surficial deposits that pre- and postdate mining activity have aided in determining the geochemical baseline in the watershed. Several photographs with their corresponding geochemical baseline profiles are accessible through .PDF links from several of the maps. A single coverage for all surficial deposits mapped is included as an ArcInfo shape file as an Arc Export format .e00 file. A gradient map for major headwater tributary streams to the Animas River is also included. The gradient map has stream segments that are color-coded based on relative variations in slope and .PDF format links to each stream gradient profile. Stream gradients were derived from U.S. Geological Survey 10-m digital elevation model data. This project was accomplished in support of the U.S. Geological Survey's Abandoned Mine Lands Initiative in the San Juan Mountains, Colorado.

IntegratedMap: a Web interface for integrating genetic map data.

PubMed

Yang, Hongyu; Wang, Hongyu; Gingle, Alan R

2005-05-01

IntegratedMap is a Web application and database schema for storing and interactively displaying genetic map data. Its Web interface includes a menu for direct chromosome/linkage group selection, a search form for selection based on mapped object location and linkage group displays. An overview display provides convenient access to the full range of mapped and anchored object types with genetic locus details, such as numbers, types and names of mapped/anchored objects displayed in a compact scrollable list box that automatically updates based on selected map location and object type. Also, multilinkage group and localized map views are available along with links that can be configured for integration with other Web resources. IntegratedMap is implemented in C#/ASP.NET and the package, including a MySQL schema creation script, is available from http://cggc.agtec.uga.edu/Data/download.asp

Locations of Ice-Exposing Fresh Craters on Mars

NASA Image and Video Library

2013-12-10

This map of Mars indicates locations of new craters that have excavated ice blue and those that have not red. Albedo information comes from NASA Mars Odyssey orbiter, and the map comes from NASA Mars Global Surveyor orbiter.

Publications - GMC 262 | Alaska Division of Geological & Geophysical

Science.gov Websites

DGGS GMC 262 Publication Details Title: Map location and geological logs of core for 7 1991 diamond Reference Cominco American Inc., 1996, Map location and geological logs of core for 7 1991 diamond drill

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ciuca, Razvan; Hernández, Oscar F., E-mail: razvan.ciuca@mail.mcgill.ca, E-mail: oscarh@physics.mcgill.ca

There exists various proposals to detect cosmic strings from Cosmic Microwave Background (CMB) or 21 cm temperature maps. Current proposals do not aim to find the location of strings on sky maps, all of these approaches can be thought of as a statistic on a sky map. We propose a Bayesian interpretation of cosmic string detection and within that framework, we derive a connection between estimates of cosmic string locations and cosmic string tension G μ. We use this Bayesian framework to develop a machine learning framework for detecting strings from sky maps and outline how to implement this frameworkmore » with neural networks. The neural network we trained was able to detect and locate cosmic strings on noiseless CMB temperature map down to a string tension of G μ=5 ×10{sup −9} and when analyzing a CMB temperature map that does not contain strings, the neural network gives a 0.95 probability that G μ≤2.3×10{sup −9}.« less

Earthquakes in South Carolina and Vicinity 1698-2009

USGS Publications Warehouse

Dart, Richard L.; Talwani, Pradeep; Stevenson, Donald

2010-01-01

This map summarizes more than 300 years of South Carolina earthquake history. It is one in a series of three similar State earthquake history maps. The current map and the previous two for Virginia and Ohio are accessible at http://pubs.usgs.gov/of/2006/1017/ and http://pubs.usgs.gov/of/2008/1221/. All three State earthquake maps were collaborative efforts between the U.S. Geological Survey and respective State agencies. Work on the South Carolina map was done in collaboration with the Department of Geological Sciences, University of South Carolina. As with the two previous maps, the history of South Carolina earthquakes was derived from letters, journals, diaries, newspaper accounts, academic journal articles, and, beginning in the early 20th century, instrumental recordings (seismograms). All historical (preinstrumental) earthquakes that were large enough to be felt have been located based on felt reports. Some of these events caused damage to buildings and their contents. The more recent widespread use of seismographs has allowed many smaller earthquakes, previously undetected, to be recorded and accurately located. The seismicity map shows historically located and instrumentally recorded earthquakes in and near South Carolina

Preliminary analysis of Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) for mineralogic mapping at sites in Nevada and Colorado

NASA Technical Reports Server (NTRS)

Kruse, Fred A.; Taranik, Dan L.; Kierein-Young, Kathryn S.

1988-01-01

Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) data for sites in Nevada and Colorado were evaluated to determine their utility for mineralogical mapping in support of geologic investigations. Equal energy normalization is commonly used with imaging spectrometer data to reduce albedo effects. Spectra, profiles, and stacked, color-coded spectra were extracted from the AVIRIS data using an interactive analysis program (QLook) and these derivative data were compared to Airborne Imaging Spectrometer (AIS) results, field and laboratory spectra, and geologic maps. A feature extraction algorithm was used to extract and characterize absorption features from AVIRIS and laboratory spectra, allowing direct comparison of the position and shape of absorption features. Both muscovite and carbonate spectra were identified in the Nevada AVIRIS data by comparison with laboratory and AIS spectra, and an image was made that showed the distribution of these minerals for the entire site. Additional, distinctive spectra were located for an unknown mineral. For the two Colorado sites, the signal-to-noise problem was significantly worse and attempts to extract meaningful spectra were unsuccessful. Problems with the Colorado AVIRIS data were accentuated by the IAR reflectance technique because of moderate vegetation cover. Improved signal-to-noise and alternative calibration procedures will be required to produce satisfactory reflectance spectra from these data. Although the AVIRIS data were useful for mapping strong mineral absorption features and producing mineral maps at the Nevada site, it is clear that significant improvements to the instrument performance are required before AVIRIS will be an operational instrument.

Shallow Water Habitat Mapping in Cape Cod National Seashore: A Post-Hurricane Sandy Study

NASA Astrophysics Data System (ADS)

Borrelli, M.; Smith, T.; Legare, B.; Mittermayr, A.

2017-12-01

Hurricane Sandy had a dramatic impact along coastal areas in proximity to landfall in late October 2012, and those impacts have been well-documented in terrestrial coastal settings. However, due to the lack of data on submerged marine habitats, similar subtidal impact studies have been limited. This study, one of four contemporaneous studies commissioned by the US National Park Service, developed maps of submerged shallow water marine habitats in and around Cape Cod National Seashore, Massachusetts. All four studies used similar methods of data collection, processing and analysis for the production of habitat maps. One of the motivations for the larger study conducted in the four coastal parks was to provide park managers with a baseline inventory of submerged marine habitats, against which to measure change after future storm events and other natural and anthropogenic phenomena. In this study data from a phase-measuring sidescan sonar, bottom grab samples, seismic reflection profiling, and sediment coring were all used to develop submerged marine habitat maps using the Coastal and Marine Ecological Classification Standard (CMECS). Vessel-based acoustic surveys (n = 76) were conducted in extreme shallow water across four embayments from 2014-2016. Sidescan sonar imagery covering 83.37 km2 was collected, and within that area, 49.53 km2 of co-located bathymetric data were collected with a mean depth of 4.00 m. Bottom grab samples (n = 476) to sample macroinvertebrates and sediments (along with other water column and habitat data) were collected, and these data were used along with the geophysical and coring data to develop final habitat maps using the CMECS framework.

Surface Radiation Survey at the Shepley’s Hill Remediation Site, Devens, Massachusettes

DOE Office of Scientific and Technical Information (OSTI.GOV)

J. R. Giles; C. P. Oertel; L. G. Roybal

2009-09-01

The Idaho National Laboratory (INL) provided technical support for ongoing environmental remediation activities at the Shepley’s Hill remediation site, near Devens, MA. The technical support included the completion of a radiation survey of naturally occurring radioactive materials (NORM) at Shepley’s Hill, Shepley’s Hill landfill cover, and Red Cove areas. The objective of the radiation survey was to assess the ability of the INL backpack sodium iodide spectroscopy (BaSIS) system to detect elevated levels of NORM that may be associated with radon-222 emanation from near surface and subsurface fractures in the area. It is postulated that these fracture zones provide subsurfacemore » conduits for the transport of environmental contaminants. As such, location of these fracture sets will proved EPA Region 1 with the means for completing the development of an accurate site conceptual model. The results of the radiological survey show that some of the radiological anomalies correlate with currently mapped rock outcrops; however, not all of the rock outcrops in the surveyed area have been mapped. As such, it is not conclusive that all of the radiological anomalies correspond with surface rock outcrops. EPA Region 1 intends to perform a more comprehensive correlation of the radiation data collected with the BaSIS system with additional data sets such as detailed bedrock structural mapping, 2-dimensional resistivity profiling, and high-resolution topographic mapping. The results of this effort will be used in consideration of designing a potential follow-on effort for mapping of radon.« less

New results from the MRO/CRISM investigation

NASA Astrophysics Data System (ADS)

Murchie, Scott L.; Mustard, John; Arvidson, Raymond; Bishop, Janice; Clancy, R. Todd; Ehlmann, Bethany; Skok, J. R.; Wray, James; Lichtenberg, Kimberly; Andrews-Hanna, Jeffrey

The CRISM visible-infrared imaging spectrometer on the MRO spacecraft has completed over 1.7 Mars years of its investigation. During that time CRISM has acquired over 11,500 hyper-spectral observations at 20-40 m/pixel (typically coordinated with 30 cm/pixel HiRISE images and 6 m/pixel CTX images), 12,500 globally distributed measurements of aerosol opacity and trace gas abundances, and 200 m/pixel mapping of 70% of Mars at 72 wavelengths. Ma-jor results from the first Mars year of operation include characterization of the composition, stratigraphy, and geologic setting of ten distinct classes of deposits containing minerals diagnos-tic of past aqueous processes, and monitoring of spatial and seasonal variations in atmospheric properties during the year of a global dust event. New results during the second Mars year of operations include: (a) discovery of Noachian-aged hydrothermal alteration of the crust, includ-ing formation of serpentine; (b) Hesperian-aged hydrothermal deposits, for example in Syrtis Major; (c) more complete mapping of late Noachian-to Hesperian-aged sulfate-bearing layered deposits, revealing correlation with expected locations of groundwater discharge; (d) detailed mineral mapping of candidate MSL landing sites, and characterization of seasonal change at the Phoenix site; and (e) limb profiles of gases and aerosols showing their distribution at vertical scales <1 km.

Using ArcMap, Google Earth, and Global Positioning Systems to select and locate random households in rural Haiti.

PubMed

Wampler, Peter J; Rediske, Richard R; Molla, Azizur R

2013-01-18

A remote sensing technique was developed which combines a Geographic Information System (GIS); Google Earth, and Microsoft Excel to identify home locations for a random sample of households in rural Haiti. The method was used to select homes for ethnographic and water quality research in a region of rural Haiti located within 9 km of a local hospital and source of health education in Deschapelles, Haiti. The technique does not require access to governmental records or ground based surveys to collect household location data and can be performed in a rapid, cost-effective manner. The random selection of households and the location of these households during field surveys were accomplished using GIS, Google Earth, Microsoft Excel, and handheld Garmin GPSmap 76CSx GPS units. Homes were identified and mapped in Google Earth, exported to ArcMap 10.0, and a random list of homes was generated using Microsoft Excel which was then loaded onto handheld GPS units for field location. The development and use of a remote sensing method was essential to the selection and location of random households. A total of 537 homes initially were mapped and a randomized subset of 96 was identified as potential survey locations. Over 96% of the homes mapped using Google Earth imagery were correctly identified as occupied dwellings. Only 3.6% of the occupants of mapped homes visited declined to be interviewed. 16.4% of the homes visited were not occupied at the time of the visit due to work away from the home or market days. A total of 55 households were located using this method during the 10 days of fieldwork in May and June of 2012. The method used to generate and field locate random homes for surveys and water sampling was an effective means of selecting random households in a rural environment lacking geolocation infrastructure. The success rate for locating households using a handheld GPS was excellent and only rarely was local knowledge required to identify and locate households. This method provides an important technique that can be applied to other developing countries where a randomized study design is needed but infrastructure is lacking to implement more traditional participant selection methods.

Influence of lidar, Landsat imagery, disturbance history, plot location accuracy, and plot size on accuracy of imputation maps of forest composition and structure

Treesearch

Harold S.J. Zald; Janet L. Ohmann; Heather M. Roberts; Matthew J. Gregory; Emilie B. Henderson; Robert J. McGaughey; Justin Braaten

2014-01-01

This study investigated how lidar-derived vegetation indices, disturbance history from Landsat time series (LTS) imagery, plot location accuracy, and plot size influenced accuracy of statistical spatial models (nearest-neighbor imputation maps) of forest vegetation composition and structure. Nearest-neighbor (NN) imputation maps were developed for 539,000 ha in the...

Signatures of Relativistic Helical Motion in the Rotation Measures of Active Galactic Nucleus Jets

NASA Astrophysics Data System (ADS)

Broderick, Avery E.; Loeb, Abraham

2009-10-01

Polarization has proven to be an invaluable tool for probing magnetic fields in relativistic jets. Maps of the intrinsic polarization vectors have provided the best evidence to date for uniform, toroidally dominated magnetic fields within jets. More recently, maps of the rotation measure (RM) in jets have for the first time probed the field geometry of the cool, moderately relativistic surrounding material. In most cases, clear signatures of the toroidal magnetic field are detected, corresponding to gradients in RM profiles transverse to the jet. However, in many objects, these profiles also display marked asymmetries that are difficult to explain in simple helical jet models. Furthermore, in some cases, the RM profiles are strongly frequency and/or time dependent. Here we show that these features may be naturally accounted for by including relativistic helical motion in the jet model. In particular, we are able to reproduce bent RM profiles observed in a variety of jets, frequency-dependent RM profile morphologies, and even the time dependence of the RM profiles of knots in 3C 273. Finally, we predict that some sources may show reversals in their RM profiles at sufficiently high frequencies, depending upon the ratio of the components of jet sheath velocity transverse and parallel to the jet. Thus, multi-frequency RM maps promise a novel way in which to probe the velocity structure of relativistic outflows.

A variational Bayes spatiotemporal model for electromagnetic brain mapping.

PubMed

Nathoo, F S; Babul, A; Moiseev, A; Virji-Babul, N; Beg, M F

2014-03-01

In this article, we present a new variational Bayes approach for solving the neuroelectromagnetic inverse problem arising in studies involving electroencephalography (EEG) and magnetoencephalography (MEG). This high-dimensional spatiotemporal estimation problem involves the recovery of time-varying neural activity at a large number of locations within the brain, from electromagnetic signals recorded at a relatively small number of external locations on or near the scalp. Framing this problem within the context of spatial variable selection for an underdetermined functional linear model, we propose a spatial mixture formulation where the profile of electrical activity within the brain is represented through location-specific spike-and-slab priors based on a spatial logistic specification. The prior specification accommodates spatial clustering in brain activation, while also allowing for the inclusion of auxiliary information derived from alternative imaging modalities, such as functional magnetic resonance imaging (fMRI). We develop a variational Bayes approach for computing estimates of neural source activity, and incorporate a nonparametric bootstrap for interval estimation. The proposed methodology is compared with several alternative approaches through simulation studies, and is applied to the analysis of a multimodal neuroimaging study examining the neural response to face perception using EEG, MEG, and fMRI. © 2013, The International Biometric Society.

Analysis of remote sensing data collected for detection and mapping of oil spills: Reduction and analysis of multi-sensor airborne data of the NASA Wallops oil spill exercise of November 1978

NASA Technical Reports Server (NTRS)

1982-01-01

Airborne, remotely sensed data of the NASA Wallops controlled oil spill were corrected, reduced and analysed. Sensor performance comparisons were made by registering data sets from different sensors, which were near-coincident in time and location. Multispectral scanner images were, in turn, overlayed with profiles of correlation between airborne and laboratory-acquired fluorosensor spectra of oil; oil-thickness contours derived (by NASA) from a scanning fluorosensor and also from a two-channel scanning microwave radiometer; and synthetic aperture radar X-HH images. Microwave scatterometer data were correlated with dual-channel (UV and TIR) line scanner images of the oil slick.

Revised coordinates of the Mars Orbiter Laser Altimeter (MOLA) footprints

NASA Astrophysics Data System (ADS)

Annibali, S.; Stark, A.; Gwinner, K.; Hussmann, H.; Oberst, J.

2017-09-01

We revised the Mars Orbiter Laser Altimeter (MOLA) footprint locations (i.e. areocentric body-fixed latitude and longitude), using updated trajectory models for the Mars Global Surveyor and updated rotation parameters of Mars, including precession, nutation and length-of-day variation. We assess the impact of these updates on the gridded MOLA maps. A first comparison reveals that even slight corrections to the rotational state of Mars can lead to height differences up to 100 m (in particular in regions with high slopes, where large interpolation effects are expected). Ultimately, we aim at independent measurements of the rotation parameters of Mars. We co-register MOLA profiles to digital terrain models from stereo images (stereo DTMs) and measure offsets of the two data sets.

Mars Atmospheric Characterization Using Advanced 2-Micron Orbiting Lidar

NASA Technical Reports Server (NTRS)

Singh, U.; Engelund, W.; Refaat, T.; Kavaya, M.; Yu, J.; Petros, M.

2015-01-01

Mars atmospheric characterization is critical for exploring the planet. Future Mars missions require landing massive payloads to the surface with high accuracy. The accuracy of entry, descent and landing (EDL) of a payload is a major technical challenge for future Mars missions. Mars EDL depends on atmospheric conditions such as density, wind and dust as well as surface topography. A Mars orbiting 2-micron lidar system is presented in this paper. This advanced lidar is capable of measuring atmospheric pressure and temperature profiles using the most abundant atmospheric carbon dioxide (CO2) on Mars. In addition Martian winds and surface altimetry can be mapped, independent of background radiation or geographical location. This orbiting lidar is a valuable tool for developing EDL models for future Mars missions.

Archive of Boomer Seismic Reflection Data Collected During USGS Cruises 01SCC01 and 01SCC02, Timbalier Bay and Offshore East Timbalier Island, Louisiana, June-August, 2001

USGS Publications Warehouse

Calderon, Karynna; Dadisman, Shawn V.; Flocks, James G.; Kindinger, Jack G.; Wiese, Dana S.

2003-01-01

In June, July, and August of 2001, the U.S. Geological Survey (USGS), in cooperation with the University of New Orleans (UNO), the U.S. Army Corps of Engineers, and the Louisiana Department of Natural Resources, conducted a shallow geophysical and sediment core survey of Timbalier Bay and the Gulf of Mexico offshore East Timbalier Island, Louisiana. This report serves as an archive of unprocessed digital seismic reflection data, trackline navigation files, trackline navigation maps, observers' logbooks, Geographic Information Systems (GIS) information, and formal Federal Geographic Data Committee (FGDC) metadata. In addition, a filtered and gained digital Graphics Interchange Format (GIF) image of each seismic profile is provided. Please see Kulp and others (2002), Flocks and others (2003), and Kulp and others (in prep.) for further information about the sediment cores collected and the geophysical results. For convenience, a list of acronyms and abbreviations frequently used in this report is also included. This Digital Versatile Disc (DVD) document is readable on any computing platform that has standard DVD driver software installed. Documentation on this DVD was produced using Hyper Text Markup Language (HTML) utilized by the World Wide Web (WWW) and allows the user to access the information using a web browser (i.e. Netscape, Internet Explorer). To access the information contained on this disc, open the file 'index.htm' located at the top level of the disc using a web browser. This report also contains WWW links to USGS collaborators and other agencies. These links are only accessible if access to the Internet is available while viewing this DVD. The archived boomer seismic reflection data are in standard Society of Exploration Geophysicists (SEG) SEG-Y format (Barry et al., 1975) and may be downloaded for processing with public domain software such as Seismic Unix (SU), currently located at http://www.cwp.mines.edu/cwpcodes/index.html. Examples of SU processing scripts are provided in the BOOM.tar file located in the SU subfolder of the SOFTWARE folder located at the top level of this disc. In-house (USGS) DOS and Microsoft Windows compatible software for viewing SEG-Y headers - DUMPSEGY.EXE (Zihlman, 1992) - is provided in the USGS subfolder of the SOFTWARE folder. Processed profile images, trackline navigation maps, logbooks, and formal metadata may be viewed with a web browser.

Archive of Chirp Seismic Reflection Data Collected During USGS Cruises 01SCC01 and 01SCC02, Timbalier Bay and Offshore East Timbalier Island, Louisiana, June 30 - July 9 and August 1 - 12, 2001

USGS Publications Warehouse

Calderon, Karynna; Dadisman, Shawn V.; Flocks, James G.; Wiese, Dana S.; Kindinger, Jack G.

2003-01-01

In June, July, and August of 2001, the U.S. Geological Survey (USGS), in cooperation with the University of New Orleans, the U.S. Army Corps of Engineers, and the Louisiana Department of Natural Resources, conducted a shallow geophysical and sediment core survey of Timbalier Bay and the Gulf of Mexico offshore East Timbalier Island, Louisiana. This report serves as an archive of unprocessed digital seismic reflection data, trackline navigation files, trackline navigation maps, observers' logbooks, Geographic Information Systems (GIS) information, and formal Federal Geographic Data Committee (FGDC) metadata. In addition, a gained digital Graphics Interchange Format (GIF) image of each seismic profile is provided. Please see Kulp and others (2002), Flocks and others (2003), and Kulp and others (in prep.) for further information about the sediment cores collected and the geophysical results. For convenience, a list of acronyms and abbreviations frequently used in this report is also included. This Digital Versatile Disc (DVD) document is readable on any computing platform that has standard DVD driver software installed. Documentation on this DVD was produced using Hyper Text Markup Language (HTML) utilized by the World Wide Web (WWW) and allows the user to access the information using a web browser (i.e. Netscape, Internet Explorer). To access the information contained on these discs, open the file 'index.htm' located at the top level of each disc using a web browser. This report also contains WWW links to USGS collaborators and other agencies. These links are only accessible if access to the internet is available while viewing these DVDs. The archived chirp seismic reflection data are in standard Society of Exploration Geophysicists (SEG) SEG-Y format (Barry et al., 1975) and may be downloaded for processing with public domain software such as Seismic Unix (SU), currently located at http://www.cwp.mines.edu/cwpcodes/index.html. Examples of SU processing scripts are provided in the CHIRP.tar file located in the SU subfolder of the SOFTWARE folder located at the top level of each disc. In-house (USGS) DOS and Microsoft Windows compatible software for viewing SEG-Y headers - DUMPSEGY.EXE (Zihlman, 1992) - is provided in the USGS subfolder of the SOFTWARE folder. Processed profile images, trackline navigation maps, logbooks, and formal metadata may be viewed with a web browser.

Amphibious Magnetotelluric Investigation of the Aleutian Arc: Mantle Melt Generation and Migration beneath Okmok Caldera

NASA Astrophysics Data System (ADS)

Zelenak, G.; Key, K.; Bennington, N. L.; Bedrosian, P.

2015-12-01

Understanding the factors controlling the release of volatiles from the downgoing slab, the subsequent generation of melt in the overlying mantle wedge, the migration of melt to the crust, and its evolution and emplacement within the crust are important for advancing our understanding of arc magmatism and crustal genesis. Because melt and aqueous fluids are a few orders of magnitude more electrically conductive than unmelted peridotite, the conductivity-mapping magnetotelluric (MT) method is well-suited to imaging fluids and melt beneath arc volcanoes. Here we present conductivity results from an amphibious MT profile crossing Okmok volcano in the central Aleutian arc. The Aleutian arc is one of the most volcanically active regions in North America, making it an ideal location for studying arc magnetism. Okmok volcano, located on the northeastern portion of Umnak Island, is among the most active volcanoes in the Aleutian chain. In addition to two caldera-forming events in the Holocene, numerous eruptions in the past century indicate a robust magmatic supply. Previous coarse resolution seismic studies have inferred a crustal magma reservoir. In order to investigate the role fluids play in melting the mantle wedge, how melts ascend through the corner flow regime of the mantle wedge, how melt migrates and is stored within the upper mantle and crust, and how this impacts explosive caldera forming eruptions, we carried out an amphibious geophysical survey across the arc in June-July 2015. Twenty-nine onshore MT stations and 10 offshore stations were collected in a 3D array covering Okmok, and 43 additional offshore MT stations completed a 300 km amphibious profile starting at the trench, crossing the forearc, arc and backarc. Thirteen onshore passive seismic stations were also installed and will remain in place for one year to supplement the twelve permanent stations on the island. Data collected by this project will be used to map seismic velocity and electrical conductivity variations within the arc, providing unique constraints
on temperature, mineralogy and fluid content. This abstract covers preliminary MT constraints on the mantle and deep crust as inferred from the 300 km long amphibious profile. A companion abstract (Bennington et al.) considers the crustal magma chamber imaged by the 3D array.

Highly spatially- and seasonally-resolved predictive contamination maps for persistent organic pollutants: development and validation.

PubMed

Ballabio, Cristiano; Guazzoni, Niccoló; Comolli, Roberto; Tremolada, Paolo

2013-08-01

A reliable spatial assessment of the POPs contamination in soils is essential for burden studies and flux evaluations. Soil characteristics and properties vary enormously even within small spatial scale and over time; therefore soil capacity of accumulating POPs varies greatly. In order to include this very high spatial and temporal variability, models can be used for assessing soil accumulation capacity in a specific time and space and, from it, the spatial distribution and temporal trends of POPs concentrations. In this work, predictive contamination maps of the accumulation capacity of soils were developed at a space resolution of 1×1m with a time frame of one day, in a study area located in the central Alps. Physical algorithms for temperature and organic carbon estimation along the soil profile and across the year were fitted to estimate the horizontal, vertical and seasonal distribution of the contamination potential for PCBs in soil (Ksa maps). The resulting maps were cross-validated with an independent set of PCB contamination data, showing very good agreement (e.g. for CB-153, R(2)=0.80, p-value≤2.2·10(-06)). Slopes of the regression between predicted Ksa and experimental concentrations were used to map the soil contamination for the whole area, taking into account soil characteristics and temperature conditions. These maps offer the opportunity to evaluate burden (concentration maps) and fluxes (emission maps) with highly resolved temporal and spatial detail. In addition, in order to explain the observed low autumn PCB concentrations in soil related to the high Ksa values of this period, a dynamic model of seasonal variation of soil concentrations was developed basing on rate parameters fitted on measured concentrations. The model was able to describe, at least partially, the observed different behavior between the quite rapid discharge phase in summer and the slow recharge phase in autumn. Copyright © 2013 Elsevier B.V. All rights reserved.

Airborne gamma-ray spectrometer and magnetometer survey: Victoria quadrangle (Washington). Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1981-01-01

One uranium anomaly meets the minimum statistical requirements. Potassium (%K), equivalent Uranium (ppM eU), equivalent Thorium (ppM eT), eU/eT, eU/K, eT/K, and magnetic pseudo-contour maps are presented. Stacked Profiles showing geologic strip maps along each flight-line, together with sensor data, and ancillary data are presented. All maps and profiles were prepared on a scale of 1:250,000, but have been reduced to 1:500,000 for presentation. Anomaly number 1 is over an exposure of the Permian Shuksan metamorphic suite which is predominantly phyllite (Trps).

Siting of prison complex above abandoned underground coal mine

DOE Office of Scientific and Technical Information (OSTI.GOV)

Marino, G.G.

1998-10-01

This paper discusses in detail the process undertaken to mitigate the effects of any future mine subsidence on prison structures proposed above old abandoned underground workings. The site for a proposed prison complex purchased by the state of Indiana was located in west-central Indiana and was undermined by an old abandoned room and pillar mine. Based on a study of the mine map and subsurface verification of the extent of mining it was determined that all prison buildings and important structures could be placed above solid coal to the north. However, one masonry building was located within the potential drawmore » zone of mine works that still contained significant mine voids. Based on empirical data the subsidence potential was estimated and the building was designed accordingly to be mine subsidence resistant. It was decided that a phase 2 prison complex should be constructed adjacent to and just south of the phase 1 complex. This complex would be directly above the underground workings. Subsequently, an extensive subsurface investigation program was undertaken to (1) ascertain whether or not mine areas where buildings would be located were already collapsed and thus only nominal, if any, subsidence could occur in the future and (2) verify the presence of solid coal areas within the mine as indicated on the mine map. Based on all the site information gathered subsidence profiles were developed from an empirical database of subsidence events in the Illinois coal basin. As a result of this work many structures on the site required no or nominal subsidence considerations. However, for others that could be affected potentially by future subsidence movement preliminary subsidence resistant designs were completed using the expected level of potential subsidence movement.« less

Application of logistic regression for landslide susceptibility zoning of Cekmece Area, Istanbul, Turkey

NASA Astrophysics Data System (ADS)

Duman, T. Y.; Can, T.; Gokceoglu, C.; Nefeslioglu, H. A.; Sonmez, H.

2006-11-01

As a result of industrialization, throughout the world, cities have been growing rapidly for the last century. One typical example of these growing cities is Istanbul, the population of which is over 10 million. Due to rapid urbanization, new areas suitable for settlement and engineering structures are necessary. The Cekmece area located west of the Istanbul metropolitan area is studied, because the landslide activity is extensive in this area. The purpose of this study is to develop a model that can be used to characterize landslide susceptibility in map form using logistic regression analysis of an extensive landslide database. A database of landslide activity was constructed using both aerial-photography and field studies. About 19.2% of the selected study area is covered by deep-seated landslides. The landslides that occur in the area are primarily located in sandstones with interbedded permeable and impermeable layers such as claystone, siltstone and mudstone. About 31.95% of the total landslide area is located at this unit. To apply logistic regression analyses, a data matrix including 37 variables was constructed. The variables used in the forwards stepwise analyses are different measures of slope, aspect, elevation, stream power index (SPI), plan curvature, profile curvature, geology, geomorphology and relative permeability of lithological units. A total of 25 variables were identified as exerting strong influence on landslide occurrence, and included by the logistic regression equation. Wald statistics values indicate that lithology, SPI and slope are more important than the other parameters in the equation. Beta coefficients of the 25 variables included the logistic regression equation provide a model for landslide susceptibility in the Cekmece area. This model is used to generate a landslide susceptibility map that correctly classified 83.8% of the landslide-prone areas.

Oblique map of the northern Sierra Nevada, California, showing location of gold-bearing areas

USGS Publications Warehouse

Alpha, T.R.; Dodge, F.C.W.; Bliss, J.D.

1987-01-01

Locations of lode gold prospects and mines shown on the map were obtained from the U.S. Geological Survey's Mineral Resource Data System (MRDS), a computerized mineral-resource information file, and plotted in their respective locations (D.F. Huber, written commun., 1986). Some locations from two northern counties, missing from the MRDS retrival, were added. The twenty lode mines believed to be the most productive are cited in table 1. A total of nearly 4,000 sites, including both prospects and mines, were initially plotted, but about a third of those were obscured by topography on the oblique map. Locations of Tertiary river channels and gold-dredging fields were taken from published general references modified by examining specific sources and by cursory field examination. Seven of the major dredge fields are identified in table 2.

High Concentrations of Hydrogen-bearing Volatiles at the Base of Poleward-facing slopes in the Moon's Large Southern Permanently Shadowed Regions.

NASA Astrophysics Data System (ADS)

McClanahan, T. P.; Mitrofanov, I. G.; Boynton, W. V.; Chin, G.; Livengood, T. A.; Litvak, M. L.; Sanin, A. B.; Starr, R. D.

2016-12-01

In this paper we review evidence that indicates that high concentrations of hydrogen-bearing volatiles are biased towards the base of poleward-facing slopes (PFS) in the Moon's large southern permanently shadowed regions (PSR). Results are derived from a correlated study of Lunar Reconnaissance Orbiter instrument maps of: epithermal neutron leakage flux observed by the Lunar Exploration Neutron Detector (LEND), topography derived from the Lunar Observing Laser Altimeter (LOLA) and surface thermal maps derived from the Diviner radiometer. Maximum concentrations of hydrogen-volatiles, likely as water ice, are observed in the Cabeus crater's PSR, 0.62 wght% water-equivalent-hydrogen. Detailed studies show that the occurrence of hydrogen-volatiles at the base of the (PFS) are correlated with the locations of low PSR temperatures of Cabeus, Haworth, Shoemaker and Faustini. LEND observations show no consistent correlation to smaller impact craters and the lowest temperatures within the PSR's. It is not presently known if the high volatile concentrations are due to downslope migration or thermal stability in the PFS breaks in slope. 15-km Full-width at Half-Maximum (FWHM) is shown to be an upper-bounds condition for the LEND collimated sensor's spatial resolution, derived from a cross-sectional profile, through the permanently shadowed region at Cabeus'. LEND's high-resolution spatial response is further illustrated in a 220-km long profile cut through the co-aligned permanently shadowed regions and partially-illuminated ridges of Haworth, Shoemaker, Faustini and Amundsen craters.

Mapping and modelling of collapse sinkholes in soluble rock: the Münsterdorf site, northern Germany

NASA Astrophysics Data System (ADS)

Kaufmann, Georg; Romanov, Douchko

2017-04-01

Münsterdorf is a small village in the north of Hamburg, located along the northern rim of a salt diapir. The Permian rocks are uplifted and overlying rocks such as the cretaceous limestone, normally in several kilometres depth, have been pushed up close to the surface. In Münsterdorf, the cretaceous limestone can be found in around 20 m depth, and about 2 km further south, cretaceous limestones are quarried in a large open-pit mine. Since 2004, collapse sinkholes form on a sporting ground in Münsterdorf, with a frequency of about 1 per year, about 2-3 m in diameter and 3-5 m deep. The collapse sinkholes do not reach the underlying limestone, but seem to be related to accelerated dissolution in that formation. Above the cretacious limestone, quaternary gravels and glacial marls provide a non-soluble, but permeable and heterogeneous cover of about 20 m thickness. We have mapped the sporting ground and its vicinity with gravity (GRAV), electrical resistivity imaging (ERI), self-potential measurements (SP), and ground-penetrating radar (GPR). While GRAV and SP is fairly unspectacular, the ERI profiles indicate a significant change in the surface layer, from thin and irregular in the northern part to thicker and more homogeneous in the southern part of the sporting ground. GPR profiles confirm this result. With numerically modelling the evolution of flow and porosity in the cretaceous limestone, we discuss the potential cause of the sinkhole formation and its sudden onset.

Specific issues, exact locations: case study of a community mapping project to improve safety in a disadvantaged community.

PubMed

Qummouh, Rana; Rose, Vanessa; Hall, Pat

2012-12-01

Safety is a health issue and a significant concern in disadvantaged communities. This paper describes an example of community-initiated action to address perceptions of fear and safety in a suburb in south-west Sydney which led to the development of a local, community-driven research project. As a first step in developing community capacity to take action on issues of safety, a joint resident-agency group implemented a community safety mapping project to identify the extent of safety issues in the community and their exact geographical location. Two aerial maps of the suburb, measuring one metre by two metres, were placed on display at different locations for four months. Residents used coloured stickers to identify specific issues and exact locations where crime and safety were a concern. Residents identified 294 specific safety issues in the suburb, 41.9% (n=123) associated with public infrastructure, such as poor lighting and pathways, and 31.9% (n=94) associated with drug-related issues such as drug activity and discarded syringes. Good health promotion practice reflects community need. In a very practical sense, this project responded to community calls for action by mapping resident knowledge on specific safety issues and exact locations and presenting these maps to local decision makers for further action.

Mantle discontinuities mapped by inversion of global surface wave data

NASA Astrophysics Data System (ADS)

Khan, A.; Boschi, L.; Connolly, J.

2009-12-01

We invert global observations of fundamental and higher order Love and Rayleigh surface-wave dispersion data jointly at selected locations for 1D radial profiles of Earth's mantle composition, thermal state and anisotropic structure using a stochastic sampling algorithm. Considering mantle compositions as equilibrium assemblages of basalt and harzburgite, we employ a self-consistent thermodynamic method to compute their phase equilibria and bulk physical properties (P, S wave velocity and density). Combining these with locally varying anisotropy profiles, we determine anisotropic P and S wave velocities to calculate dispersion curves for comparison with observations. Models fitting data within uncertainties, provide us with a range of profiles of composition, temperature and anisotropy. This methodology presents an important complement to conventional seismic tomograpy methods. Our results indicate radial and lateral gradients in basalt fraction, with basalt depletion in the upper and enrichment of the upper part of the lower mantle, in agreement with results from geodynamical calculations, melting processes at mid-ocean ridges and subduction of chemically stratified lithosphere. Compared with PREM and seismic tomography models, our velocity models are generally faster in the upper transition zone (TZ), and slower in the lower TZ, implying a steeper velocity gradient. While less dense than PREM, density gradients in the TZ are also steeper. Mantle geotherms are generally adiabatic in the TZ, whereas in the upper part of the lower mantle stronger lateral variations are observed. The TZ structure, and thus location of the phase transitions in the Olivine system as well as their physical properties, are found to be controlled to a large degree by thermal rather than compositional variations. The retrieved anistropy structure agrees with previous studies indicating positive as well as laterally varying upper mantle anisotropy, while there is little evidence for anisotropy in and below the TZ.

Gravity wave momentum flux estimation from CRISTA satellite data

NASA Astrophysics Data System (ADS)

Ern, M.; Preusse, P.; Alexander, M. J.; Offermann, D.

2003-04-01

Temperature altitude profiles measured by the CRISTA satellite were analyzed for gravity waves (GWs). Amplitudes, vertical and horizontal wavelengths of GWs are retrieved by applying a combination of maximum entropy method (MEM) and harmonic analysis (HA) to the temperature height profiles and subsequently comparing the so retrieved GW phases of adjacent altitude profiles. From these results global maps of the absolute value of the vertical flux of horizontal momentum have been estimated. Significant differences between distributions of the temperature variance and distributions of the momentum flux exist. For example, global maps of the momentum flux show a pronounced northward shift of the equatorial maximum whereas temperature variance maps of the tropics/subtropics are nearly symmetric with respect to the equator. This indicates the importance of the influence of horizontal and vertical wavelength distribution on global structures of the momentum flux.

Digital files for northeast Asia geodynamics, mineral deposit location, and metallogenic belt maps, stratigraphic columns, descriptions of map units, and descriptions of metallogenic belts

USGS Publications Warehouse

Nokleberg, Warren J.; Badarch, Gombosuren; Berzin, Nikolai A.; Diggles, Michael F.; Hwang, Duk-Hwan; Khanchuk, Alexander I.; Miller, Robert J.; Naumova, Vera V.; Obolensky, Alexander A.; Ogasawara, Masatsugu; Parfenov, Leonid M.; Prokopiev, Andrei V.; Rodionov, Sergey M.; Yan, Hongquan

2004-01-01

This is the online version of a CD-ROM publication. It contains all of the data that are on the disc but extra files have been removed: index files, software installers, and Windows autolaunch files. This publication contains a a series of files for Northeast Asia geodynamics, mineral deposit location, and metallogenic belt maps descriptions of map units and metallogenic belts, and stratigraphic columns. This region includes Eastern Siberia, Russian Far East, Mongolia, Northeast China, South Korea, and Japan. The files include: (1) a geodynamics map at a scale of 1:5,000,000; (2) page-size stratigraphic columns for major terranes; (3) a generalized geodynamics map at a scale of 1:15,000,000; (4) a mineral deposit location map at a scale of 1:7,500,000; (5) metallogenic belt maps at a scale of 1:15,000,000; (6) detailed descriptions of geologic units with references; (7) detailed descriptions of metallogenic belts with references; and (8) summary mineral deposit and metallogenic belt tables. The purpose of this publication is to provide high-quality, digital graphic files for maps and figures, and Word files for explanations, descriptions, and references to customers and users.

Seismicity map of the state of Arizona

USGS Publications Warehouse

Stover, C.W.; Reagor, B.G.; Algermissen, S.T.

1986-01-01

This map is one of a series of seismicity maps produced by the U. S. Geological Survey that show earthquake data of individual states or groups of states at the scale of 1:1,000,000. This map shows only those earthquakes with epicenters located within the boundaries of Arizona, even though earthquakes in nearby states or countries may have been felt or may have caused damage in Arizona.The data in table 1 were used to compile the seismicity map; these data are a corrected, expanded, and updated (through 1982) version of the data used by Algermissen (1969) for a study of seismic risk in the United States. The locations and intensities of some earthquakes were revised and intensities were assigned where none had been before. Many earthquakes were added to the original list from new data sources as well as from some old data sources that had not been previously used. The data in table 1 represent best estimates of the location of the epicenter, magnitude, and intensity of each earthquake on the basis of historical and current information. Some of the aftershocks from large earthquakes are listed, but not all, especially for earthquakes that occurred before seismic instruments were universally used.Table 1 includes earthquakes reported felt in Yuma, Arizona that had no corroborating reports from other areas. These events are listed with coordinates (32.7°N., 114.6° W.) near Yuma even though it is suspected that they may have actually occurred in the Imperial Valley, California or Baja California, Mexico. Very few earthquakes have been instrumentally located near Yuma and it is believed that most historical felt reports correspond to earthquakes that occurred in the seismic zone extending from the Gulf of California northward into California. It is known that some earthquakes located graphically from phase data prior to epicenter determinations by electronic computer were erroneously located in southern Arizona and actually had locations in the Gulf of California or northern Mexico.For detailed descriptions of the effects of earthquakes in Arizona see Bulletin 193, Arizona earthquakes, 1776-1980 (reference 343) which lists the localities where the earthquakes were felt and the effects at each place. This publication also includes isoseismal maps for 41 events.The latitude and longitude coordinates of each epicenter were rounded to the nearest tenth of a degree and sorted so that all identical locations were grouped and counted. These locations are represented on the map by a triangle. The number of earthquakes at each location is shown on the map by the arabic number to the right of the triangle. The Roman numeral to the left of the triangle is the maximum Modified Mercalli intensity (Wood and Neumann, 1931) of al 1 earthquakes with epicenters at that geographic location. The absence of an intensity value indicates that no intensities have been assigned to earthquakes at that location. The year shown below each triangle is the latest year for which the maximum intensity was recorded.

Measurements of the vertical profile of water vapor abundance in the Martian atmosphere from Mars Observer

NASA Technical Reports Server (NTRS)

Schofield, J. T.; Mccleese, Daniel J.

1988-01-01

An analysis is presented of the Pressure Modulator Infrared Radiometer (PMIRR) capabilities along with how the vertical profiles of water vapor will be obtained. The PMIRR will employ filter and pressure modulation radiometry using nine spectral channels, in both limb scanning and nadir sounding modes, to obtain daily, global maps of temperature, dust extinction, condensate extinction, and water vapor mixing ratio profiles as a function of pressure to half scale height or 5 km vertical resolution. Surface thermal properties will also be mapped, and the polar radiactive balance will be monitored.

Near-surface gas mapping studies of salt geologic features at Weeks Island and other sites

DOE Office of Scientific and Technical Information (OSTI.GOV)

Molecke, M.A.; Carney, K.R.; Autin, W.J.

1996-10-01

Field sampling and rapid gas analysis techniques were used to survey near-surface soil gases for geotechnical diagnostic purposes at the Weeks Island Strategic Petroleum Reserve (SPR) site and other salt dome locations in southern Louisiana. This report presents the complete data, results and interpretations obtained during 1995. Weeks Island 1994 gas survey results are also briefly summarized; this earlier study did not find a definitive correlation between sinkhole No. 1 and soil gases. During 1995, several hundred soil gas samples were obtained and analyzed in the field by gas chromatography, for profiling low concentrations and gas anomalies at ppm tomore » percent levels. The target gases included hydrogen, methane, ethane and ethylene. To supplement the field data, additional gas samples were collected at various site locations for laboratory analysis of target gases at ppb levels. Gases in the near-surface soil originate predominantly from the oil, from petrogenic sources within the salt, or from surface microbial activity. Surveys were conducted across two Weeks Island sinkholes, several mapped anomalous zones in the salt, and over the SPR repository site and its perimeter. Samples were also taken at other south Louisiana salt dome locations for comparative purposes. Notable results from these studies are that elevated levels of hydrogen and methane (1) were positively associated with anomalous gassy or shear zones in the salt dome(s) and (2) are also associated with suspected salt fracture (dilatant) zones over the edges of the SPR repository. Significantly elevated areas of hydrogen, methane, plus some ethane, were found over anomalous shear zones in the salt, particularly in a location over high pressure gas pockets in the salt, identified in the mine prior to SPR operations. Limited stable isotope ratio analyses, SIRA, were also conducted and determined that methane samples were of petrogenic origin, not biogenic.« less

PDEPTH—A computer program for the geophysical interpretation of magnetic and gravity profiles through Fourier filtering, source-depth analysis, and forward modeling

USGS Publications Warehouse

Phillips, Jeffrey D.

2018-01-10

PDEPTH is an interactive, graphical computer program used to construct interpreted geological source models for observed potential-field geophysical profile data. The current version of PDEPTH has been adapted to the Windows platform from an earlier DOS-based version. The input total-field magnetic anomaly and vertical gravity anomaly profiles can be filtered to produce derivative products such as reduced-to-pole magnetic profiles, pseudogravity profiles, pseudomagnetic profiles, and upward-or-downward-continued profiles. A variety of source-location methods can be applied to the original and filtered profiles to estimate (and display on a cross section) the locations and physical properties of contacts, sheet edges, horizontal line sources, point sources, and interface surfaces. Two-and-a-half-dimensional source bodies having polygonal cross sections can be constructed using a mouse and keyboard. These bodies can then be adjusted until the calculated gravity and magnetic fields of the source bodies are close to the observed profiles. Auxiliary information such as the topographic surface, bathymetric surface, seismic basement, and geologic contact locations can be displayed on the cross section using optional input files. Test data files, used to demonstrate the source location methods in the report, and several utility programs are included.

a Conceptual Framework for Indoor Mapping by Using Grammars

NASA Astrophysics Data System (ADS)

Hu, X.; Fan, H.; Zipf, A.; Shang, J.; Gu, F.

2017-09-01

Maps are the foundation of indoor location-based services. Many automatic indoor mapping approaches have been proposed, but they rely highly on sensor data, such as point clouds and users' location traces. To address this issue, this paper presents a conceptual framework to represent the layout principle of research buildings by using grammars. This framework can benefit the indoor mapping process by improving the accuracy of generated maps and by dramatically reducing the volume of the sensor data required by traditional reconstruction approaches. In addition, we try to present more details of partial core modules of the framework. An example using the proposed framework is given to show the generation process of a semantic map. This framework is part of an ongoing research for the development of an approach for reconstructing semantic maps.

Acoustic mapping of the regional seafloor geology in and around Hawaiian ocean dredged-material disposal sites

USGS Publications Warehouse

Torresan, Michael E.; Gardner, James V.

2000-01-01

During January and February 1998 the U.S. Geological Survey Coastal and Marine Geology Team (USGS) conducted regional high-resolution multibeam mapping surveys of the area surrounding EPA-designated ocean disposal sites located offshore of the Hawaiian Islands of Oahu, Kauai, Maui, and Hawaii. The sites are all located within 5 nautical miles of shore on insular shelves or slopes. Regional maps were required of areas much larger than the disposal sites themselves to assess both the regional seafloor geology and the immediate vicinity of the disposal sites. The purpose of the disposal site surveys was to delimit the extent of disposal material by producing detailed bathymetric and backscatter maps of the seafloor with a ± 1 m spatial accuracy and <1% depth error. The advantage of using multibeam over conventional towed, single-beam sidescan sonar is that the multibeam data are accurately georeferenced for precise location of all imaged features. The multibeam produces a coregistered acoustic-backscatter map that is often required to locate individual disposal deposits. These data were collected by the USGS as part of its regional seafloor mapping and in support of ocean disposal site monitoring studies conducted in cooperation with the US Environmental Protection Agency (EPA) and the US Army Corps of Engineers (COE).

[Genetic study of bacteriophage phi81. I. Isolation, study of complementation and preliminary mapping of amber-mutants of bacteriophage phi81].

PubMed

Sineokiĭ, S P; Pogosov, V Z; Iankovskiĭ, N K; Krylov, V N

1976-01-01

123 Amber mutants of lambdoid bacteriophage phi81 are isolated and distributed into 19 complementation groups. Deletion mapping made possible to locate 5 gene groups on the genetic map of bacteriophage phi81 and to determine a region of possible location of mm' sticky ends on the prophage genetic map. A gene of phage phi81 is localized, which controls the adsorption specificity, and which functional similarity to a respective gene of phage phi80 is demonstrated.

Rapid Gynogenetic Mapping of Xenopus tropicalis Mutations to Chromosomes

PubMed Central

Khokha, Mustafa K.; Krylov, Vladimir; Reilly, Michael J.; Gall, Joseph G.; Bhattacharya, Dipankan; Cheung, Chung Yan J.; Kaufman, Sarah; Lam, Dang Khoa; Macha, Jaroslav; Ngo, Catherine; Prakash, Neha; Schmidt, Philip; Tlapakova, Tereza; Trivedi, Toral; Tumova, Lucie; Abu-Daya, Anita; Geach, Timothy; Vendrell, Elisenda; Ironfield, Holly; Sinzelle, Ludivine; Sater, Amy K.; Wells, Dan E.; Harland, Richard M.; Zimmerman, Lyle B.

2010-01-01

Pilot forward genetic screens in Xenopus tropicalis have isolated over 60 recessive mutations (Grammer et al., 2005; Noramly et al., 2005; Goda et al., 2006). Here we present a simple method for mapping mutations to chromosomes using gynogenesis and centromeric markers. When coupled with available genomic resources, gross mapping facilitates evaluation of candidate genes as well as higher resolution linkage studies. Using gynogenesis, we have mapped the genetic locations of the 10 X. tropicalis centromeres, and performed Fluorescence In Situ Hybridization to validate these locations cytologically. We demonstrate the use of this very small set of centromeric markers to map mutations efficiently to specific chromosomes. PMID:19441086

Mapping the 3D Geometry of the San Leandro Block of the Hayward Fault Zone Using Geologic, Geophysical and Remote Sensing Data, California State University, East Bay Campus

NASA Astrophysics Data System (ADS)

McEvilly, A.; Abimbola, A.; Chan, J. H.; Strayer, L. M.

2015-12-01

California State University, East Bay (CSUEB), located in Hayward, California, lies atop the San Leandro block (SLB) in the Hayward fault zone. The SLB is a J-K aged lithotectonic assemblage dominated by gabbro and intercalated with minor volcanics and sediments. It is bound by the subparallel northwest-trending western Hayward and eastern Chabot (CF) faults and pervasively cut by anastomosing secondary faults. The block itself is ~30 km along strike and 2-3 km wide. Previous studies suggest the block dips steeply to the northeast and extends to a depth of at least 7 km. In May of 2015, as part of an ongoing collaborative effort led by the USGS to create a 3D velocity model of the San Francisco Bay Area, researchers from CSUEB and the USGS conducted a seismic survey on the CSUEB campus. The primary goal of this pilot study was to locate the trace of the CF on the CSUEB campus and to determine bedrock depth. We deployed a 60-channel, 300m profile using 4.5Hz sensors spaced at 5m intervals. Active seismic sources were used at each geophone location. A 226kg accelerated weight-drop was used to generate P and Rayleigh waves for P-wave tomography and multichannel analysis of surface waves (MASW), and a 3.5kg sledgehammer and block were used to generate S and Love waves for S-wave tomography and multichannel analysis of Love waves (MALW). Preliminary P-wave tomography, MASW, and MALW results from this pilot study suggest the location of an eastward-dipping CF as well as the presence of a high-velocity unit at about 20m depth, presumably an unmapped sliver of bedrock from the San Leandro block. Further studies planned for the fall of 2015 include additional seismic lines and surface mapping along the Chabot fault on and near the CSUEB campus. These new geophysical, GPS, and field geological data will be integrated with LiDAR imagery and existing geological, gravity and magnetic maps to create a 3-dimensional model of the portion of the SLB that contains the CSUEB campus.

Mapping landscape phenology preference of yellow-billed cuckoo with AVHRR data

USGS Publications Warehouse

Wallace, Cynthia S.A.; Villarreal, Miguel; van Riper, Charles

2013-01-01

We mapped habitat for threatened Yellow-billed Cuckoo (Coccycus americanus occidentalis) in the State of Arizona using the temporal greenness dynamics of the landscape, or the landscape phenology. Landscape phenometrics were derived from Advanced Very High Resolution Radiometer (AVHRR) Normalized Difference Vegetation Index (NDVI) data for 1998 and 1999 by using Fourier harmonic analysis to analyze the waveform of the annual NDVI profile at each pixel. We modeled the spatial distribution of Yellow-billed Cuckoo habitat by coupling the field data of Cuckoo presence or absence and point-based samples of riparian and cottonwood-willow vegetation types with satellite phenometrics for 1998. Models were validated using field and satellite data collected in 1999. The results indicate that Yellow-billed Cuckoo occupy locations within their preferred habitat that exhibit peak greenness after the start of the summer monsoon and are greener and more dynamic than “average” habitat. Identification of preferred phenotypes within recognized habitat areas can be used to refine habitat models, inform predictions of habitat response to climate change, and suggest adaptation strategies.

Comprehensive Characterization a Tidal Energy Site (Invited)

NASA Astrophysics Data System (ADS)

Polagye, B. L.; Thomson, J. M.; Bassett, C. S.; Epler, J.; Northwest National Marine Renewable Energy Center

2010-12-01

Northern Admiralty Inlet, Puget Sound, Washington is the proposed location of a pilot tidal energy project. Site-specific characterization of the physical and biological environment is required for device engineering and environmental analysis. However, the deep water and strong currents which make the site attractive for tidal energy development also pose unique challenges to collecting comprehensive information. This talk focuses on efforts to optimally site hydrokinetic turbines and estimate their acoustic impact, based on 18 months of field data collected to date. Additional characterization efforts being undertaken by the University of Washington branch of the Northwest National Marine Renewable Energy Center and its partners include marine mammal presence and behavior, water quality, seabed geology, and biofouling potential. Because kinetic power density varies with the cube of horizontal current velocity, an accurate map of spatial current variations is required to optimally site hydrokinetic turbines. Acoustic Doppler profilers deployed on the seabed show operationally meaningful variations in flow characteristics (e.g., power density, directionality, vertical shear) and tidal harmonic constituents over length scales of less than 100m. This is, in part, attributed to the proximity of this site to a headland. Because of these variations, interpolation between stationary measurement locations introduces potentially high uncertainty. The use of shipboard acoustic Doppler profilers is shown to be an effective tool for mapping peak currents and, combined with information from seabed profilers, may be able to resolve power density variations in the project area. Because noise levels from operating turbines are expected to exceed regulatory thresholds for incidental harassment of marine mammals known to be present in the project area, an estimate of the acoustic footprint is required to permit the pilot project. This requires site-specific descriptions of pre-existing ambient noise levels and the transmission loss (or practical spreading) at frequencies of interest. Recording hydrophones deployed on the seabed are used to quantify ambient noise, but are contaminated by self-noise during periods of strong currents. An empirical estimate of transmission loss is obtained from a source of opportunity - a passenger ferry which operates for more than twelve hours each day. By comparing recorded sound pressure levels against the location of the passenger ferry and other vessels (logged by an AIS receiver), the empirical transmission loss and source level for the ferry are obtained. Measurements of current velocity and underwater noise can apply routine oceanographic instruments and techniques. More unique measurements will be more challenging, such as high resolution sampling of current structure upstream and downstream of an operating device tens of meters off the seabed. Innovative approaches are required for cost effective characterization of tidal energy sites and monitoring of operating projects.

Validation of Innovative Exploration Technologies for Newberry Volcano: Drill Site Location Map 2010

DOE Data Explorer

Jaffe, Todd

2012-01-01

Newberry seeks to explore "blind" (no surface evidence) convective hydrothermal systems associated with a young silicic pluton on the flanks of Newberry Volcano. This project will employ a combination of innovative and conventional techniques to identify the location of subsurface geothermal fluids associated with the hot pluton. Newberry project drill site location map 2010. Once the exploration mythology is validated, it can be applied throughout the Cascade Range and elsewhere to locate and develop “blind” geothermal resources.

Not all memories are the same: Situational context influences spatial recall within one's city of residency.

PubMed

Meilinger, Tobias; Frankenstein, Julia; Simon, Nadine; Bülthoff, Heinrich H; Bresciani, Jean-Pierre

2016-02-01

Reference frames in spatial memory encoding have been examined intensively in recent years. However, their importance for recall has received considerably less attention. In the present study, passersby used tags to arrange a configuration map of prominent city center landmarks. It has been shown that such configurational knowledge is memorized within a north-up reference frame. However, participants adjusted their maps according to their body orientations. For example, when participants faced south, the maps were likely to face south-up. Participants also constructed maps along their location perspective-that is, the self-target direction. If, for instance, they were east of the represented area, their maps were oriented west-up. If the location perspective and body orientation were in opposite directions (i.e., if participants faced away from the city center), participants relied on location perspective. The results indicate that reference frames in spatial recall depend on the current situation rather than on the organization in long-term memory. These results cannot be explained by activation spread within a view graph, which had been used to explain similar results in the recall of city plazas. However, the results are consistent with forming and transforming a spatial image of nonvisible city locations from the current location. Furthermore, prior research has almost exclusively focused on body- and environment-based reference frames. The strong influence of location perspective in an everyday navigational context indicates that such a reference frame should be considered more often when examining human spatial cognition.

Colour Coding of Maps for Colour Deficient Observers.

PubMed

Røise, Anne Kari; Kvitle, Anne Kristin; Green, Phil

2016-01-01

We evaluate the colour coding of a web map traffic information service based on profiles simulating colour vision deficiencies. Based on these simulations and principles for universal design, we propose adjustments of the existing colours creating more readable maps for the colour vision deficient observers.

A joint TEM-HLEM geophysical approach to borehole sitting in deeply weathered granitic terrains.

PubMed

Meju, M A; Fontes, S L; Ulugergerli, E U; La Terra, E F; Germano, C R; Carvalho, R M

2001-01-01

The accurate location of aquiferous fracture zones in granite beneath a > 50 m thick weathered mantle in semi-arid regions is a major hydrogeological problem. It is expected that the zone of intensive fracturing will be more susceptible to weathering and thus be characterized by the thickest development of saprolite, a good electrically conductive target for deep-probing electromagnetic systems. The single-loop transient electromagnetic (TEM) technique is well known to have the capability for detecting concealed steep mineralized targets in mining environments and can be adapted to this hydrogeological problem. We propose that combining the conventional frequency-domain horizontal-loop electromagnetic (HLEM) and single-loop TEM is an effective practical approach to locating concealed aquiferous fracture zones. In the supporting case studies presented here, we deployed multifrequency HLEM profiling (with 50 m transmitter-receiver separation) and TEM soundings with contiguous 10 or 20 m sided loops along the survey lines in a granitic terrain affected by deep (> 50 m) weathering in northeast Brazil. A somewhat layered structure consisting of resistive hardpan/leached zone, conductive saprolite, and resistive basement is identifiable in the typical TEM depth sounding data. We obtained coincident HLEM and TEM anomalies at all the sites, enabling a relatively straightforward selection of potential drilling positions. Simple resistivity-depth transformation of the TEM data was done for each site, yielding an approximate section from which drilling depths were estimated. All of the boreholes located were successful. Although our results appear to indicate that the single-loop TEM method could be used independently for borehole sitting in deeply weathered granitic terrains and that the weathering profile over granite can be mapped using TEM depth soundings of appropriate observational bandwidth, we recommend a joint electromagnetic approach for optimal well sitting.

Spatial extent and temporal variability of Greenland firn aquifers detected by ground and airborne radars

NASA Astrophysics Data System (ADS)

Miège, Clément; Forster, Richard R.; Brucker, Ludovic; Koenig, Lora S.; Solomon, D. Kip; Paden, John D.; Box, Jason E.; Burgess, Evan W.; Miller, Julie Z.; McNerney, Laura; Brautigam, Noah; Fausto, Robert S.; Gogineni, Sivaprasad

2016-12-01

We document the existence of widespread firn aquifers in an elevation range of 1200-2000 m, in the high snow-accumulation regions of the Greenland ice sheet. We use NASA Operation IceBridge accumulation radar data from five campaigns (2010-2014) to estimate a firn-aquifer total extent of 21,900 km2. We investigate two locations in Southeast Greenland, where repeated radar profiles allow mapping of aquifer-extent and water table variations. In the upper part of Helheim Glacier the water table rises in spring following above-average summer melt, showing the direct firn-aquifer response to surface meltwater production changes. After spring 2012, a drainage of the firn-aquifer lower margin (5 km) is inferred from both 750 MHz accumulation radar and 195 MHz multicoherent radar depth sounder data. For 2011-2014, we use a ground-penetrating radar profile located at our Ridgeline field site and find a spatially stable aquifer with a water table fluctuating less than 2.5 m vertically. When combining radar data with surface topography, we find that the upper elevation edge of firn aquifers is located directly downstream of locally high surface slopes. Using a steady state 2-D groundwater flow model, water is simulated to flow laterally in an unconfined aquifer, topographically driven by ice sheet surface undulations until the water encounters crevasses. Simulations suggest that local flow cells form within the Helheim aquifer, allowing water to discharge in the firn at the steep-to-flat transitions of surface topography. Supported by visible imagery, we infer that water drains into crevasses, but its volume and rate remain unconstrained.

Map showing recently active breaks along the San Andreas Fault between Pt. Delgada and Bolinas Bay, California

USGS Publications Warehouse

Brown, Robert D.; Wolfe, Edward W.

1970-01-01

This strip map is one of a series of maps showing recently active fault breaks along the San Andreas and other active faults in California. It is designed to inform persons who are concerned with land use near the fault of the location of those fault breaks that have moved recently. The lines on the map are lines of rupture and creep that can be identified by field evidence and that clearly affect the present surface of the land. Map users should keep in mind that these lines are intended primarily as guides to help locate the fault; the mapped lines are not necessarily shown with the precision demanded by some engineering or land utilization needs.

Towards quantitative usage of EMI-data for Digital Soil Mapping

NASA Astrophysics Data System (ADS)

Nüsch, A.-K.; Wunderlich, T.; Kathage, S.; Werban, U.; Dietrich, P.

2009-04-01

As formulated in the Thematic Strategy for Soil Protection prepared by the European Commission soil degradation is a serious problem in Europe. The degradation is driven or exacerbated by human activity and has a direct impact on water and air quality, biodiversity, climate and human life-quality. High-resolution soil property maps are one major prerequisite for the specific protection of soil function and restoration of degraded soils as well as sustainable land use, water and environmental management. However, the currently available techniques for (digital) soil mapping still have deficiencies in terms of reliability and precision, the feasibility of investigation of large areas (e.g. catchments and landscapes) and the assessment of soil degradation threats at this scale. The focus of the iSOIL (Interactions between soil related science - Linking geophysics, soil science and digital soil mapping) project is on improving fast and reliable mapping of soil properties, soil functions and soil degradation threats. This requires the improvement as well as integration of geophysical and spectroscopic measurement techniques in combination with advanced soil sampling approaches, pedometrical and pedophysical approaches. Many commercially available geophysical sensors and equipment (EMI, DC, gamma-spectroscopy, magnetics) are ready to use for measurements of different parameters. Data collection with individual sensors is well developed and numerously described. However comparability of data of different sensor types as well as reproducibility of data is not self-evident. In particular handling of sensors has to be carried out accurately, e.g. consistent calibration. Soil parameters will be derived from geophysical properties to create comprehensive soil maps. Therefore one prerequisite is the comparison of different geophysical properties not only qualitative but also quantitative. At least reproducibility is one of the most important conditions for monitoring tasks. The first parameter we focussed on is apparent electrical conductivity (ECa). It is an important geophysical properity in soil science since soil parameters (water content, etc.) can be deduced. Nowadays mobile geophysical platforms allow to survey large areas comprehensively in a short time period. These platforms have been equipped with EM38DD (Geonics) and Profiler EMP-400 (GSSI) - two different types of electromagnetic induction (EMI) instruments - within first iSOIL field campaign. While EM38DD measures in horizontal and vertical mode at the same time, Profiler measures three frequencies simultaneously and magnetic susceptibility additionally. Coil separation of the instruments is nearly the same, so penetration depth is similar. On the other hand, frequencies are arbitrary at Profiler but fixed at EM38DD. These differences in penetration depth have to taken into account. By our measurement we tested the comparability of the data to show differences between instruments of the same type (EM38DD-EM38DD) using different settings, and different types (EM38DD-Profiler). Moreover both sensors work in continuous as well in discontinuous mode. The results show that quality of data is comparable, but the quantities are varying. This has to be considered for further interpretations and monitoring. In the next steps we have to determine how to convert relative data into absolute data since ECa data from different locations are not comparable to each other in a quantitative way. In the talk we will give an introduction in the application of EMI for soil monitoring, followed by an overview about comparability and reproducibility of data.

77 FR 18766 - Proposed Flood Elevation Determinations

Federal Register 2010, 2011, 2012, 2013, 2014

2012-03-28

... DEPARTMENT OF HOMELAND SECURITY Federal Emergency Management Agency 44 CFR Part 67 [Docket ID FEMA-2010-0003; Internal Agency Docket No. FEMA-B-1114] Proposed Flood Elevation Determinations Correction... locations above. Please refer to the revised Flood Insurance Rate Map located at the community map...

Mines, prospects, and occurrences of metallic (excluding gold), pegmatite, and rare-earth mineral commodities in the Greenville 1 degree by 2 degrees Quadrangle, South Carolina, Georgia, and North Carolina

USGS Publications Warehouse

D'Agostino, John P.; Zupan, Alan Jon; Maybin, Arthur H.; Abrams, Charlotte E.; German, Jerry M.

1994-01-01

All of the known mines, prospects, and occurrences of metallic (excluding gold, pegmatite, and rare-earth mineral commodities for the Greenville 1° x 2° quadrangle are tabulated in this report. The table lists, in consecutive order for each county (fig. 1), the map number of each item, which correlates and locates the item on the accompanying Greenville 1° x 2° quadrangle map. The known name of the feature; the 7.5' topographic map on the which the commodity site is located; the Universal Transverse Mercator (UTM) northing and easting grid coordinates from the appropriate 7.5' topographic map; the commodity; remarks; and references are also listed. Some locations are known, but many sites are not verified and their locations are only approximate. References are listed in References Cited and referred to by number to save space.

An inexpensive active optical remote sensing instrument for assessing aerosol distributions.

PubMed

Barnes, John E; Sharma, Nimmi C P

2012-02-01

Air quality studies on a broad variety of topics from health impacts to source/sink analyses, require information on the distributions of atmospheric aerosols over both altitude and time. An inexpensive, simple to implement, ground-based optical remote sensing technique has been developed to assess aerosol distributions. The technique, called CLidar (Charge Coupled Device Camera Light Detection and Ranging), provides aerosol altitude profiles over time. In the CLidar technique a relatively low-power laser transmits light vertically into the atmosphere. The transmitted laser light scatters off of air molecules, clouds, and aerosols. The entire beam from ground to zenith is imaged using a CCD camera and wide-angle (100 degree) optics which are a few hundred meters from the laser. The CLidar technique is optimized for low altitude (boundary layer and lower troposphere) measurements where most aerosols are found and where many other profiling techniques face difficulties. Currently the technique is limited to nighttime measurements. Using the CLidar technique aerosols may be mapped over both altitude and time. The instrumentation required is portable and can easily be moved to locations of interest (e.g. downwind from factories or power plants, near highways). This paper describes the CLidar technique, implementation and data analysis and offers specifics for users wishing to apply the technique for aerosol profiles.

Classification of andisol soil on robusta coffee plantation in Silima Pungga - Pungga District

NASA Astrophysics Data System (ADS)

Marbun, P.; Nasution, Z.; Hanum, H.; Karim, A.

2018-02-01

The survey study aims to classify the Inceptisol soil on Robusta coffee plantation in Silima Pugga-Pungga District, from Order level to Sub Group level. The study was conducted on location of sample soil profiles which were determined based on Soil Map Unit (SMU) with the main Andisol Order, i.e. SMU 12, SMU 15 and SMU 17 of 18 existing SMU. The soil profiles were described to determine the morphological characteristics of the soil, while the physical and chemical properties were done by laboratory analysis. The soil samples were taken from each horizon in each profile and analyzed in the laboratory in the form of soil texture, bulk density, pH H2O, pH KCl, pH NaF, C-organic, exchangeable bases (Ca2+, Mg2+, K+, Na+), ZPC (zero point charge), base saturation, cation exchange capasity (CEC), P-retention, Al-Oxalate (Al-O) and Si-Oxalate (Si-O). The results showed that the classification of Andisol soil based on Soil Taxonomy only has one Sub Group namely Typic Hapludand. It is expected that the results of this study can provide information for more appropriate land management in order to increase the production of Robusta coffee plant in Silima Pungga-Pungga Sub district.

Big Data, Small Data: Accessing and Manipulating Geoscience Data Ranging From Repositories to Student-Collected Data Sets Using GeoMapApp

NASA Astrophysics Data System (ADS)

Goodwillie, A. M.

2015-12-01

We often demand information and data to be accessible over the web at no cost, and no longer do we expect to spend time labouriously compiling data from myriad sources with frustratingly-different formats. Instead, we increasingly expect convenience and consolidation. Recent advances in web-enabled technologies and cyberinfrastructure are answering those calls by providing data tools and resources that can transform undergraduate education. By freeing up valuable classroom time, students can focus upon gaining deeper insights and understanding from real-world data. GeoMapApp (http://www.geomapapp.org) is a map-based data discovery and visualisation tool developed at Lamont-Doherty Earth Observatory. GeoMapApp promotes U-Learning by working across all major computer platforms and functioning anywhere with internet connectivity, by lowering socio-economic barriers (it is free), by seamlessly integrating thousands of built-in research-grade data sets under intuitive menus, and by being adaptable to a range of learning environments - from lab sessions, group projects, and homework assignments to in-class pop-ups. GeoMapApp caters to casual and specialist users alike. Contours, artificial illumination, 3-D displays, data point manipulations, cross-sectional profiles, and other display techniques help students better grasp the content and geospatial context of data. Layering capabilities allow easy data set comparisons. The core functionality also applies to imported data sets: Student-collected data can thus be imported and analysed using the same techniques. A new Save Session function allows educators to preserve a pre-loaded state of GeoMapApp. When shared with a class, the saved file allows every student to open GeoMapApp at exactly the same starting point from which to begin their data explorations. Examples of built-in data sets include seafloor crustal age, earthquake locations and focal mechanisms, analytical geochemistry, ocean water physical properties, US and international geological maps, and satellite imagery. Student-generated data sets can be imported in Excel, ASCII, shapefile, and gridded format. Base maps can be saved for posters and publications. A wide range of undergraduate enquiry-driven education modules for GeoMapApp is already available at SERC.

Method and apparatus for the simultaneous display and correlation of independently generated images

DOEpatents

Vaitekunas, Jeffrey J.; Roberts, Ronald A.

1991-01-01

An apparatus and method for location by location correlation of multiple images from Non-Destructive Evaluation (NDE) and other sources. Multiple images of a material specimen are displayed on one or more monitors of an interactive graphics system. Specimen landmarks are located in each image and mapping functions from a reference image to each other image are calcuated using the landmark locations. A location selected by positioning a cursor in the reference image is mapped to the other images and location identifiers are simultaneously displayed in those images. Movement of the cursor in the reference image causes simultaneous movement of the location identifiers in the other images to positions corresponding to the location of the reference image cursor.

Map Resource Packet: Course Models for the History-Social Science Framework, Grade Seven.

ERIC Educational Resources Information Center

California State Dept. of Education, Sacramento.

This packet of maps is an auxiliary resource to the "World History and Geography: Medieval and Early Modern Times. Course Models for the History-Social Science Framework, Grade Seven." The set includes: outline, precipitation, and elevation maps; maps for locating key places; landform maps; and historical maps. The list of maps are…

Preliminary Pseudo 3-D Imagery of the State Line Fault, Stewart Valley, Nevada Using Seismic Reflection Data

NASA Astrophysics Data System (ADS)

Saldaña, S. C.; Snelson, C. M.; Taylor, W. J.; Beachly, M.; Cox, C. M.; Davis, R.; Stropky, M.; Phillips, R.; Robins, C.; Cothrun, C.

2007-12-01

The Pahrump Fault system is located in the central Basin and Range region and consists of three main fault zones: the Nopah range front fault zone, the State Line fault zone and the Spring Mountains range fault zone. The State Line fault zone is made up north-west trending dextral strike-slip faults that run parallel to the Nevada- California border. Previous geologic and geophysical studies conducted in and around Stewart Valley, located ~90 km from Las Vegas, Nevada, have constrained the location of the State Line fault zone to within a few kilometers. The goals of this project were to use seismic methods to definitively locate the northwestern most trace of the State Line fault and produce pseudo 3-D seismic cross-sections that can then be used to characterize the subsurface geometry and determine the slip of the State Line fault. During July 2007, four seismic lines were acquired in Stewart Valley: two normal and two parallel to the mapped traces of the State Line fault. Presented here are preliminary results from the two seismic lines acquired normal to the fault. These lines were acquired utilizing a 144-channel geode system with each of the 4.5 Hz vertical geophones set out at 5 m intervals to produce a 595 m long profile to the north and a 715 m long profile to the south. The vibroseis was programmed to produce an 8 s linear sweep from 20-160 Hz. These data returned excellent signal to noise and reveal subsurface lithology that will subsequently be used to resolve the subsurface geometry of the State Line fault. This knowledge will then enhance our understanding of the evolution of the State Line fault. Knowing how the State Line fault has evolved gives insight into the stick-slip fault evolution for the region and may improve understanding of how stress has been partitioned from larger strike-slip systems such as the San Andreas fault.

Protection of Location Privacy Based on Distributed Collaborative Recommendations

PubMed Central

Wang, Peng; Yang, Jing; Zhang, Jian-Pei

2016-01-01

In the existing centralized location services system structure, the server is easily attracted and be the communication bottleneck. It caused the disclosure of users’ location. For this, we presented a new distributed collaborative recommendation strategy that is based on the distributed system. In this strategy, each node establishes profiles of their own location information. When requests for location services appear, the user can obtain the corresponding location services according to the recommendation of the neighboring users’ location information profiles. If no suitable recommended location service results are obtained, then the user can send a service request to the server according to the construction of a k-anonymous data set with a centroid position of the neighbors. In this strategy, we designed a new model of distributed collaborative recommendation location service based on the users’ location information profiles and used generalization and encryption to ensure the safety of the user’s location information privacy. Finally, we used the real location data set to make theoretical and experimental analysis. And the results show that the strategy proposed in this paper is capable of reducing the frequency of access to the location server, providing better location services and protecting better the user’s location privacy. PMID:27649308

Protection of Location Privacy Based on Distributed Collaborative Recommendations.

PubMed

Wang, Peng; Yang, Jing; Zhang, Jian-Pei

2016-01-01

In the existing centralized location services system structure, the server is easily attracted and be the communication bottleneck. It caused the disclosure of users' location. For this, we presented a new distributed collaborative recommendation strategy that is based on the distributed system. In this strategy, each node establishes profiles of their own location information. When requests for location services appear, the user can obtain the corresponding location services according to the recommendation of the neighboring users' location information profiles. If no suitable recommended location service results are obtained, then the user can send a service request to the server according to the construction of a k-anonymous data set with a centroid position of the neighbors. In this strategy, we designed a new model of distributed collaborative recommendation location service based on the users' location information profiles and used generalization and encryption to ensure the safety of the user's location information privacy. Finally, we used the real location data set to make theoretical and experimental analysis. And the results show that the strategy proposed in this paper is capable of reducing the frequency of access to the location server, providing better location services and protecting better the user's location privacy.

A 2.5D Map-Based Mobile Robot Localization via Cooperation of Aerial and Ground Robots

PubMed Central

Nam, Tae Hyeon; Shim, Jae Hong; Cho, Young Im

2017-01-01

Recently, there has been increasing interest in studying the task coordination of aerial and ground robots. When a robot begins navigation in an unknown area, it has no information about the surrounding environment. Accordingly, for robots to perform tasks based on location information, they need a simultaneous localization and mapping (SLAM) process that uses sensor information to draw a map of the environment, while simultaneously estimating the current location of the robot on the map. This paper aims to present a localization method based in cooperation between aerial and ground robots in an indoor environment. The proposed method allows a ground robot to reach accurate destination by using a 2.5D elevation map built by a low-cost RGB-D (Red Green and Blue-Depth) sensor and 2D Laser sensor attached onto an aerial robot. A 2.5D elevation map is formed by projecting height information of an obstacle using depth information obtained by the RGB-D sensor onto a grid map, which is generated by using the 2D Laser sensor and scan matching. Experimental results demonstrate the effectiveness of the proposed method for its accuracy in location recognition and computing speed. PMID:29186843

A 2.5D Map-Based Mobile Robot Localization via Cooperation of Aerial and Ground Robots.

PubMed

Nam, Tae Hyeon; Shim, Jae Hong; Cho, Young Im

2017-11-25

Recently, there has been increasing interest in studying the task coordination of aerial and ground robots. When a robot begins navigation in an unknown area, it has no information about the surrounding environment. Accordingly, for robots to perform tasks based on location information, they need a simultaneous localization and mapping (SLAM) process that uses sensor information to draw a map of the environment, while simultaneously estimating the current location of the robot on the map. This paper aims to present a localization method based in cooperation between aerial and ground robots in an indoor environment. The proposed method allows a ground robot to reach accurate destination by using a 2.5D elevation map built by a low-cost RGB-D (Red Green and Blue-Depth) sensor and 2D Laser sensor attached onto an aerial robot. A 2.5D elevation map is formed by projecting height information of an obstacle using depth information obtained by the RGB-D sensor onto a grid map, which is generated by using the 2D Laser sensor and scan matching. Experimental results demonstrate the effectiveness of the proposed method for its accuracy in location recognition and computing speed.

TU-AB-202-12: A Novel Method to Map Endoscopic Video to CT for Treatment Planning and Toxicity Analysis in Radiation Therapy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ingram, W; Yang, J; Beadle, B

Purpose: Endoscopic examinations are routine procedures for head-and-neck cancer patients. Our goal is to develop a method to map the recorded video to CT, providing valuable information for radiotherapy treatment planning and toxicity analysis. Methods: We map video frames to CT via virtual endoscopic images rendered at the real endoscope’s CT-space coordinates. We developed two complementary methods to find these coordinates by maximizing real-to-virtual image similarity:(1)Endoscope Tracking: moves the virtual endoscope frame-by-frame until the desired frame is reached. Utilizes prior knowledge of endoscope coordinates, but sensitive to local optima. (2)Location Search: moves the virtual endoscope along possible paths through themore » volume to find the desired frame. More robust, but more computationally expensive. We tested these methods on clay phantoms with embedded markers for point mapping and protruding bolus material for contour mapping, and we assessed them qualitatively on three patient exams. For mapped points we calculated 3D-distance errors, and for mapped contours we calculated mean absolute distances (MAD) from CT contours. Results: In phantoms, Endoscope Tracking had average point error=0.66±0.50cm and average bolus MAD=0.74±0.37cm for the first 80% of each video. After that the virtual endoscope got lost, increasing these values to 4.73±1.69cm and 4.06±0.30cm. Location Search had point error=0.49±0.44cm and MAD=0.53±0.28cm. Point errors were larger where the endoscope viewed the surface at shallow angles<10 degrees (1.38±0.62cm and 1.22±0.69cm for Endoscope Tracking and Location Search, respectively). In patients, Endoscope Tracking did not make it past the nasal cavity. However, Location Search found coordinates near the correct location for 70% of test frames. Its performance was best near the epiglottis and in the nasal cavity. Conclusion: Location Search is a robust and accurate technique to map endoscopic video to CT. Endoscope Tracking is sensitive to erratic camera motion and local optima, but could be used in conjunction with anchor points found using Location Search.« less

Flood-inundation maps and updated components for a flood-warning system or the City of Marietta, Ohio and selected communities along the Lower Muskingum River and Ohio River

USGS Publications Warehouse

Whitehead, Matthew T.; Ostheimer, Chad J.

2014-01-01

Flood profiles for selected reaches were prepared by calibrating steady-state step-backwater models to selected streamgage rating curves. The step-backwater models were used to determine water-surface-elevation profiles for up to 12 flood stages at a streamgage with corresponding stream-flows ranging from approximately the 10- to 0.2-percent chance annual-exceedance probabilities for each of the 3 streamgages that correspond to the flood-inundation maps. Additional hydraulic modeling was used to account for the effects of backwater from the Ohio River on water levels in the Muskingum River. The computed longitudinal profiles of flood levels were used with a Geographic Information System digital elevation model (derived from light detection and ranging) to delineate flood-inundation areas. Digital maps showing flood-inundation areas overlain on digital orthophotographs were prepared for the selected floods.

Use of Magsat anomaly data for crustal structure and mineral resources in the US midcontinent

NASA Technical Reports Server (NTRS)

Carmichael, R. S. (Principal Investigator)

1981-01-01

Magnetic profiles on individual satellites tracks were examined to identify bad (nonterrestrially-based) data points r profiles. Anomaly profiles for the same satellite track, but at different passes were compared for parallel tracks and for tracks that cross. The selected and processed data were plotted and contoured to develop a preliminary magnetic anomaly map. The map is similar in general morphology to NASA's Magsat global scalar anomaly map, but has more detail which is related to crustal properties. Efforts have begun to interpret the satellite magnetic anomalies in terms of crustal character. The correlation of magnetics with crustal petrology may have a much larger tectonic implication. Th possibility of there being an ultramafic lower crust along one zone as a consequence of a continental collision/subduction which helped form the midcontinent craton in Precambrian times is being investigated.

Maps and geospatial data for the Shorty’s Island and Myrtle Bend substrate enhancement pilot projects, Kootenai River near Bonners Ferry, Idaho, 2014

USGS Publications Warehouse

Fosness, Ryan L.

2014-01-01

This report presents the methods used to develop georeferenced portable document format maps and geospatial data that describe spawning locations and physical habitat characteristics (including egg mat locations, bathymetry, surficial sediment facies, and streamflow velocity) within the substrate enhancement pilot project study area. The results are presented as two maps illustrating the physical habitat characteristics along with proposed habitat enhancement areas, aerial imagery, and hydrography. The results of this study will assist researchers, policy makers, and management agencies in deciding the spatial location and extent of the substrate enhancement pilot project.

Phenotypic mapping of metabolic profiles using self-organizing maps of high-dimensional mass spectrometry data.

PubMed

Goodwin, Cody R; Sherrod, Stacy D; Marasco, Christina C; Bachmann, Brian O; Schramm-Sapyta, Nicole; Wikswo, John P; McLean, John A

2014-07-01

A metabolic system is composed of inherently interconnected metabolic precursors, intermediates, and products. The analysis of untargeted metabolomics data has conventionally been performed through the use of comparative statistics or multivariate statistical analysis-based approaches; however, each falls short in representing the related nature of metabolic perturbations. Herein, we describe a complementary method for the analysis of large metabolite inventories using a data-driven approach based upon a self-organizing map algorithm. This workflow allows for the unsupervised clustering, and subsequent prioritization of, correlated features through Gestalt comparisons of metabolic heat maps. We describe this methodology in detail, including a comparison to conventional metabolomics approaches, and demonstrate the application of this method to the analysis of the metabolic repercussions of prolonged cocaine exposure in rat sera profiles.

A multidisciplinary approach providing new insight into fruit flesh browning physiology in apple (Malus x domestica Borkh.).

PubMed

Di Guardo, Mario; Tadiello, Alice; Farneti, Brian; Lorenz, Giorgia; Masuero, Domenico; Vrhovsek, Urska; Costa, Guglielmo; Velasco, Riccardo; Costa, Fabrizio

2013-01-01

In terms of the quality of minimally processed fruit, flesh browning is fundamentally important in the development of an aesthetically unpleasant appearance, with consequent off-flavours. The development of browning depends on the enzymatic action of the polyphenol oxidase (PPO). In the 'Golden Delicious' apple genome ten PPO genes were initially identified and located on three main chromosomes (2, 5 and 10). Of these genes, one element in particular, here called Md-PPO, located on chromosome 10, was further investigated and genetically mapped in two apple progenies ('Fuji x Pink Lady' and 'Golden Delicious x Braeburn'). Both linkage maps, made up of 481 and 608 markers respectively, were then employed to find QTL regions associated with fruit flesh browning, allowing the detection of 25 QTLs related to several browning parameters. These were distributed over six linkage groups with LOD values spanning from 3.08 to 4.99 and showed a rate of phenotypic variance from 26.1 to 38.6%. Anchoring of these intervals to the apple genome led to the identification of several genes involved in polyphenol synthesis and cell wall metabolism. Finally, the expression profile of two specific candidate genes, up and downstream of the polyphenolic pathway, namely phenylalanine ammonia lyase (PAL) and polyphenol oxidase (PPO), provided insight into flesh browning physiology. Md-PPO was further analyzed and two haplotypes were characterised and associated with fruit flesh browning in apple.

Graphene enterprise: mapping innovation and business development in a strategic emerging technology.

PubMed

Shapira, Philip; Gök, Abdullah; Salehi, Fatemeh

This paper explores enterprise development and commercialization in the field of graphene. Firm characteristics and relationships, value chain positioning, and factors associated with product entry are examined for a set of 65 graphene-oriented small and medium-sized enterprises located in 16 different countries. As well as secondary sources and bibliometric methods to profile developments in graphene, we use computerized data mining and analytical techniques, including cluster and regression modeling, to identify patterns from publicly available online information on enterprise web sites. We identify groups of graphene small and medium-sized enterprises differentiated by how they are involved with graphene, the materials they target, whether they make equipment, and their orientation toward science and intellectual property. In general, access to finance and the firms' location are significant factors that are associated with graphene product introductions. We also find that patents and scientific publications are not statistically significant predictors of product development in our sample of graphene enterprises. We further identify a cohort of graphene-oriented firms that are signaling plans to develop intermediate graphene products that should have higher value in the marketplace. Our findings suggest that policy needs to ensure attention to the introduction and scale-up of downstream intermediate and final graphene products and associated financial, intermediary, and market identification support. The paper demonstrates novel data methods that can be combined with existing information for real-time intelligence to understand and map enterprise development and commercialization in a rapidly emerging and growing new technology.

Mixed poloidal-toroidal magnetic configuration and surface abundance distributions of the Bp star 36 Lyn

NASA Astrophysics Data System (ADS)

Oksala, M. E.; Silvester, J.; Kochukhov, O.; Neiner, C.; Wade, G. A.; the MiMeS Collaboration

2018-01-01

Previous studies of the chemically peculiar Bp star 36 Lyn revealed a moderately strong magnetic field, circumstellar material and inhomogeneous surface abundance distributions of certain elements. We present in this paper an analysis of 33 high signal-to-noise ratio, high-resolution Stokes IV observations of 36 Lyn obtained with the Narval spectropolarimeter at the Bernard Lyot Telescope at Pic du Midi Observatory. From these data, we compute new measurements of the mean longitudinal magnetic field, Bℓ, using the multiline least-squares deconvolution (LSD) technique. A rotationally phased Bℓ curve reveals a strong magnetic field, with indications for deviation from a pure dipole field. We derive magnetic maps and chemical abundance distributions from the LSD profiles, produced using the Zeeman-Doppler imaging code INVERSLSD. Using a spherical harmonic expansion to characterize the magnetic field, we find that the harmonic energy is concentrated predominantly in the dipole mode (ℓ = 1), with significant contribution from both the poloidal and toroidal components. This toroidal field component is predicted theoretically, but not typically observed for Ap/Bp stars. Chemical abundance maps reveal a helium enhancement in a distinct region where the radial magnetic field is strong. Silicon enhancements are located in two regions, also where the radial field is stronger. Titanium and iron enhancements are slightly offset from the helium enhancements, and are located in areas where the radial field is weak, close to the magnetic equator.

Chemical Mapping of Essential Oils, Flavonoids and Carotenoids in Citrus Peels by Raman Microscopy.

PubMed

Yang, Ying; Wang, Xiaohe; Zhao, Chengying; Tian, Guifang; Zhang, Hua; Xiao, Hang; He, Lili; Zheng, Jinkai

2017-12-01

Citrus peels, by-products in large quantity, are rich in various functional and beneficial components which have wide applications. Chemical analysis of these components in citrus peels is an important step to determine the usefulness of the by-products for further applications. In this study, we explored Raman microscopy for rapid, nondestructive, and in situ chemical mapping of multiple main functional components from citrus peels. The relative amount and distribution in different locations (flavedo, albedo, and longitudinal section) of 3 main functional components (essential oils, carotenoids, and flavonoids) in citrus peels were systematically investigated. The distribution profiles of these components were heterogeneous on the peels and varied between different species of citrus peels. Essential oil was found mainly existed in the oil glands, while carotenoids were in the complementary location. Some flavonoids were observed in the oil glands. This study showed the capability of Raman microscopy for rapid and nondestructive analysis of multiple bio-components without extraction from plants. The information obtained from this study would assist the better production and application of the functional and beneficial components from citrus by products in an effective and sustainable manner. This study indicated the capability of Raman microscopy for rapid and nondestructive analysis of multiple bioactive components in plant tissues. The information obtained from the study would be valuable for developing effective and sustainable strategy of utilization of citrus peels for further applications. © 2017 Institute of Food Technologists®.

A Multidisciplinary Approach Providing New Insight into Fruit Flesh Browning Physiology in Apple (Malus x domestica Borkh.)

PubMed Central

Farneti, Brian; Lorenz, Giorgia; Masuero, Domenico; Vrhovsek, Urska; Costa, Guglielmo; Velasco, Riccardo; Costa, Fabrizio

2013-01-01

In terms of the quality of minimally processed fruit, flesh browning is fundamentally important in the development of an aesthetically unpleasant appearance, with consequent off-flavours. The development of browning depends on the enzymatic action of the polyphenol oxidase (PPO). In the ‘Golden Delicious’ apple genome ten PPO genes were initially identified and located on three main chromosomes (2, 5 and 10). Of these genes, one element in particular, here called Md-PPO, located on chromosome 10, was further investigated and genetically mapped in two apple progenies (‘Fuji x Pink Lady’ and ‘Golden Delicious x Braeburn’). Both linkage maps, made up of 481 and 608 markers respectively, were then employed to find QTL regions associated with fruit flesh browning, allowing the detection of 25 QTLs related to several browning parameters. These were distributed over six linkage groups with LOD values spanning from 3.08 to 4.99 and showed a rate of phenotypic variance from 26.1 to 38.6%. Anchoring of these intervals to the apple genome led to the identification of several genes involved in polyphenol synthesis and cell wall metabolism. Finally, the expression profile of two specific candidate genes, up and downstream of the polyphenolic pathway, namely phenylalanine ammonia lyase (PAL) and polyphenol oxidase (PPO), provided insight into flesh browning physiology. Md-PPO was further analyzed and two haplotypes were characterised and associated with fruit flesh browning in apple. PMID:24205065

Graphene enterprise: mapping innovation and business development in a strategic emerging technology

NASA Astrophysics Data System (ADS)

Shapira, Philip; Gök, Abdullah; Salehi, Fatemeh

2016-09-01

This paper explores enterprise development and commercialization in the field of graphene. Firm characteristics and relationships, value chain positioning, and factors associated with product entry are examined for a set of 65 graphene-oriented small and medium-sized enterprises located in 16 different countries. As well as secondary sources and bibliometric methods to profile developments in graphene, we use computerized data mining and analytical techniques, including cluster and regression modeling, to identify patterns from publicly available online information on enterprise web sites. We identify groups of graphene small and medium-sized enterprises differentiated by how they are involved with graphene, the materials they target, whether they make equipment, and their orientation toward science and intellectual property. In general, access to finance and the firms' location are significant factors that are associated with graphene product introductions. We also find that patents and scientific publications are not statistically significant predictors of product development in our sample of graphene enterprises. We further identify a cohort of graphene-oriented firms that are signaling plans to develop intermediate graphene products that should have higher value in the marketplace. Our findings suggest that policy needs to ensure attention to the introduction and scale-up of downstream intermediate and final graphene products and associated financial, intermediary, and market identification support. The paper demonstrates novel data methods that can be combined with existing information for real-time intelligence to understand and map enterprise development and commercialization in a rapidly emerging and growing new technology.

H20 and CH4 abundances under non-LTE conditions from MIPAS upper atmosphere measurements.

NASA Astrophysics Data System (ADS)

Koukouli, M. E.; Imk-Iaa Mipas/Envisat Team

Vertical profiles of water vapour and methane have been retrieved from measurements of the Earth's Upper Atmosphere made by the Michelson Interferometer for Passive Atmospheric Sounding (MIPAS) on board the polar orbiting ENVISAT satellite. The spectral range targeted is 685-2410 cm-1 (4.1-14.6 μm) and the retrieval altitude range is ˜25-80 km. The Generic RAdiative traNsfer AnD non-LTE population Algorithm (GRANADA), jointly developed by IAA and IMK, has been used to analyse two days' worth of upper atmosphere orbits, from July 2002 and June 2003. The vertical profiles retrieved are compared and calibrated against other known water vapour experiments (e.g. HALOE) in the corresponding vertical and spacial co-locations. Global three-dimensional maps are also presented and validated against modelling results (e.g. Garcia and Solomon). The total hydrogen content of the Earth's middle atmosphere will also be investigated as means of identifying possible sinks or sources in the water vapour and methane day-night variability. A comprehensive systematic error analysis will complement the presentation of the results.

Preliminary Monitoring of Soil gas Radon in Potentially Active Faults, San Sai District, Chiang Mai Province, Thailand

NASA Astrophysics Data System (ADS)

Pondthai, P.; Udphuay, S.

2013-05-01

The magnitude of 5.1 Mw earthquake occurred in San Sai District, Chiang Mai Province, Thailand in December 2006 was considered an uncommon event due to the fact that there was no statistical record of such significant earthquake in the area. Therefore the earthquake might have been associated with a potentially active fault zone within the area. The objective of this study is to measure soil gas radon across this unknown fault zone within the Chiang Mai Basin, northern Thailand. Two profiles traversing the expected fault zone of soil gas radon measurements have been monitored, using TASTRAK solid state track nuclear detectors (SSNTDs). Radon signals from three periods of measurement show a distinctive consistent spatial distribution pattern. Anomalous radon areas along the profiles are connected to fault locations previously interpreted from other geophysical survey results. The increased radon signal changes from the radon background level with the signal-to-background ratio above 3 are considered anomalous. Such pattern of radon anomaly supports the existence of the faults. The radon measurement, therefore is a powerful technique in mapping active fault zone.

Geologic Map and GIS Data for the Patua Geothermal Area

DOE Data Explorer

Faulds, James E.

2011-10-31

Patua—ESRI Geodatabase (ArcGeology v1.3): - Contains all the geologic map data, including faults, contacts, folds, veins, dikes, unit polygons, and attitudes of strata and faults. - List of stratigraphic units. - Locations of geothermal wells. - Locations of 40Ar/39Ar and tephra samples.

Design of a 3-D Magnetic Mapping System to Locate Reinforcing Steel in Concrete Pavements

DOT National Transportation Integrated Search

2017-12-01

This report outlines the design, fabrication, and testing of a 3-D magnetic mapping system used to locate reinforcing steel in concrete pavements developed at Kansas State University (KSU) in 2006. The magnetic sensing functionality is based on the p...

Compilation of Moho boundary map for northern Fennoscandian shield

NASA Astrophysics Data System (ADS)

Silvennoinen, H.; Kozlovskaya, E.; Kissling, E.; Kosarev, G.

2012-04-01

POLENET/LAPNET project is a passive seismic array experiment in north-western Fennoscandian Shield. It is centered in northern Finland with some stations also in Sweden, Norway and Russia. The experiment was a part of International Polar Year (IPY) 2007-2009. One of the main targets of the project is to obtain a seismic model of the upper mantle using tomographic inversion of teleseismic travel times. To correct teleseismic travel times for crustal effect we present a new Moho map of POLENET/LAPNET study area located between 64˚ - 70˚ N and 18˚ - 34˚ E. The new Moho map is based on published models of previous 2-D controlled source seismic experiments and previous and new receiver function inversion results. There are four major seismic profiles crossing our research area. In addition there are some shorter profiles, but also quite large areas with no previous controlled source seismic information at all. These regions of data gaps were filled by a new analysis of receiver functions obtained from POLENET/LAPNET data. CRUST3D program was used for compiling these different types of 1-D and 2-D data to a 3-D crustal model. The program is designed to take advantage of the different methodological strengths and to compile a 3-D crustal model that fits all available data within its appropriate individual and methodological uncertainty limits. The original data leading to the published models were carefully analyzed to ascertain only information is used from locations where Moho reflectors/refractors were actually observed. The Moho interface is obtained by application of the principle of simplicity: the aim is to find a smoothest Moho interface that satisfies all reflector data within their a priori estimated error bars. On our Moho map we can see three main units in Moho, which suggests presence of three major crustal terrains. In south-western part of our study area the Moho is quite flat and shallow with average Moho depth of 44 km, which suggests that the crust there was formed in Achaean. In northern part of our study area the Moho is also quite flat and the average Moho depth is about 47 km, suggesting that the crust there has been reworked in Proterozoic. Two deepest Moho depressions were found in the north-eastern and south-eastern parts of study area, where it is reaching the depths of almost 60 km. The latter Moho depression appears to be limitation of the thin crust of the Karelian Craton not only from the West, but also from the East and is spatially coincident with the cluster of mineral deposits.

Geologic map and profiles of the north wall of the Snake River Canyon, Thousand Springs and Niagara quadrangles, Idaho

USGS Publications Warehouse

Covington, H.R.; Weaver, Jean N.

1991-01-01

The Snake River Plain is a broad, arcuate region of low relief that extends more than 300 mi across southern Idaho. The Snake River enters the plain near Idaho Falls and flows westward along the southern margin of the eastern Snake River Plain (fig. 1), a position mainly determined by the basaltic lava flows that erupted near the axis of the plain. The highly productive Snake River Plain aquifer north of the Snake River underlies most of the eastern plain. The aquifer is composed of basaltic rocks that are interbedded with fluvial and lacustrine sedimentary rocks. The top of the aquifer (water table) is typically less than 500 ft below the land surface but is deeper than 1,000 ft in a few areas. The Snake River has excavated a canyon into the nearly flat lying basaltic and sedimentary rocks of the eastern Snake River Plain aquifer, which discharges from the northern canyon wall as springs of variable size, spacing, and altitude. Geologic controls on springs are of importance because nearly 60 percent of the aquifer's discharge occurs as spring flow along the describes the geologic occurrence of springs along the northern wall of the Snake River canyon. This report is one of several that describes the geologic occurrence of springs along the northern wall of the Snake River canyon from Milner Dam to King Hill. To understand the local geologic controls on springs, the Water Resources Division of the U.S. Geological Survey initiated a geologic mapping project as part of their Snake River Plain Regional Aquifer System-Analysis Program. Objectives of the project were (1) to prepare a geologic map of a strip of land immediately north of the Snake River canyon, (2) to map the geology of the north canyon wall in profile, (3) to locate spring occurrences along the north side of the Snake River between Milner Sam and King Hill, and (4) to estimate spring discharge from the north wall of the canyon.

Geologic map and profiles of the north wall of the Snake River Canyon, Pasadena Valley and Ticeska quadrangles, Idaho

USGS Publications Warehouse

Covington, H.R.; Weaver, Jean N.

1990-01-01

The Snake River Plain is a broad, arcuate region of low relief that extends more than 300 mi across southern Idaho. The Snake River enters the plain near Idaho Falls and flows westward along the southern margin of the eastern Snake River Plain (fig. 1), a position mainly determined by the basaltic lava flows that erupted near the axis of the plain. The highly productive Snake River Plain aquifer north of the Snaked River underlies the most of the eastern plain. The aquifer is composed of basaltic ricks that are interbedded with fluvial and lacustrine sedimentary rocks. The top of the aquifer (water table) is typically less than 500 ft below the land surface, but is deeper than 1,000 ft in few areas. The Snake River had excavated a canyon into the nearly flat-lying basaltic and sedimentary rocks of the eastern Snake River Plain between Milner Dam and King Hill (fig. 2), a distance of almost 90 mi. For much of its length the canyon intersects the Snake River Plain aquifer, which discharges from the north canyon wall as springs of variable size, spacing, and altitude. Geologic controls on springs are of importance because nearly 60 percent of the aquifer's discharge occurs as spring flow along this reach of the canyon. This report is one of several that describes the geologic occurrence of springs along the northern wall of the Snake River canyon from Milner Dam to King Hill. To understand the local geologic controls on springs, the Water Resources Division of the U.S. Geological Survey initiated a geologic mapping project as part of their Snake River Plain Regional Aquifer System-Analysis Program. Objectives of the project were (1) to prepare a geologic map of a strip of land immediately north of the Snake River canyon, (2) to map the geology of the north canyon wall in profile, (3) to locate spring occurrences along the north side of the Snake River between Milner Dam and King Hill, and (4) to estimate spring discharge from the north wall of the canyon.

Geologic map and profiles of the north wall of the Snake River Canyon, Bliss, Hagerman, and Tuttle quadrangles, Idaho

USGS Publications Warehouse

Covington, H.R.; Weaver, Jean N.

1990-01-01

The Snake River Plain is a broad, arcuate region of low relief that extends more than 300 mi across southern Idaho. The Snake River enters the plain near Idaho Falls and flows westward along the southern margin of the eastern Snake River Plain (fig. 1), a position mainly determined by the basaltic lava flows that erupted near the axis of the plain. The highly productive Snake River Plain aquifer north of the Snake River underlies most of the eastern plain. The aquifer is composed of basaltic rocks that are interbedded with fluvial and lacustrine sedimentary rocks. The top of the aquifer (water table) is typically less than 500 ft below the land surface, but is deeper than 1,000 ft in a few areas. The Snake River has excavated a canyon into the nearly flat-lying basaltic and sedimentary rocks of the eastern Snake River Plain between Milner Dam and King Hill (fig. 2), a distance of almost 90 mi. For much of its length the canyon wall as springs of variable size, spacing, and altitude. Geologic controls on springs are of importance because nearly 60 percent of the aquifer's discharge occurs as spring flow along this reach of the canyon. This report is one of several that describes the geologic occurrence of springs along the northern wall of the Snake River canyon from Milner Dam to King Hill (fig. 1). To understand the local geologic controls on springs, the Water Resources Division of the U.S. Geological Survey initiated a geologic mapping project as part of their Snake River Plain Regional Aquifer System-Analysis Program. Objectives of the project were (1) to prepare a geologic map of a strip of land immediately north of the Snake River canyon, (2) to map the geology of the north canyon wall in profile, (3) to locate spring occurrences along the north side of the Snake River between Milner Dam and King Hill, and (4) to estimate spring discharge from the north wall of the canyon.

Altering spatial priority maps via reward-based learning.

PubMed

Chelazzi, Leonardo; Eštočinová, Jana; Calletti, Riccardo; Lo Gerfo, Emanuele; Sani, Ilaria; Della Libera, Chiara; Santandrea, Elisa

2014-06-18

Spatial priority maps are real-time representations of the behavioral salience of locations in the visual field, resulting from the combined influence of stimulus driven activity and top-down signals related to the current goals of the individual. They arbitrate which of a number of (potential) targets in the visual scene will win the competition for attentional resources. As a result, deployment of visual attention to a specific spatial location is determined by the current peak of activation (corresponding to the highest behavioral salience) across the map. Here we report a behavioral study performed on healthy human volunteers, where we demonstrate that spatial priority maps can be shaped via reward-based learning, reflecting long-lasting alterations (biases) in the behavioral salience of specific spatial locations. These biases exert an especially strong influence on performance under conditions where multiple potential targets compete for selection, conferring competitive advantage to targets presented in spatial locations associated with greater reward during learning relative to targets presented in locations associated with lesser reward. Such acquired biases of spatial attention are persistent, are nonstrategic in nature, and generalize across stimuli and task contexts. These results suggest that reward-based attentional learning can induce plastic changes in spatial priority maps, endowing these representations with the "intelligent" capacity to learn from experience. Copyright © 2014 the authors 0270-6474/14/348594-11$15.00/0.

Comparison of performance and quantitative descriptive analysis sensory profiling and its relationship to consumer liking between the artisanal cheese producers panel and the descriptive trained panel.

PubMed

Ramírez-Rivera, Emmanuel de Jesús; Díaz-Rivera, Pablo; Guadalupe Ramón-Canul, Lorena; Juárez-Barrientos, José Manuel; Rodríguez-Miranda, Jesús; Herman-Lara, Erasmo; Prinyawiwatkul, Witoon; Herrera-Corredor, José Andrés

2018-07-01

The aim of this research was to compare the performance and sensory profiling of a panel of artisanal cheese producers against a trained panel and their relationship to consumer liking (external preference mapping). Performance was analyzed statistically at an individual level using the Fisher's test (F) for discrimination, the mean square error for repeatability, and Manhattan plots for visualizing the intra-panel homogeneity. At group level, performance was evaluated using ANOVA. External preference mapping technique was applied to determine the efficiency of each sensory profile. Results showed that the producers panel was discriminant and repetitive with a performance similar to that of the trained panel. Manhattan plots showed that the performance of artisanal cheese producers was more homogeneous than trained panelists. The correlation between sensory profiles (Rv = 0.95) demonstrated similarities in the generation and use of sensory profiles. The external preference maps generated individually with the profiles of each panel were also similar. Recruiting individuals familiar with the production of artisanal cheeses as panelists is a viable strategy for sensory characterization of artisanal cheeses within their context of origin because their results were similar to those from the trained panel and can be correlated with consumer liking data. Copyright © 2018 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

Information Profiles of Indian Reservations in Arizona, Nevada, and Utah.

ERIC Educational Resources Information Center

Bureau of Indian Affairs (Dept. of Interior), Phoenix, AZ.

Based on information provided by Bureau of Indian Affairs (BIA) Agency Offices and by the Indian Health Service, this publication provides profiles of 46 Indian reservations located in Arizona, Nevada, and Utah. These profiles include data on reservations that are: (1) located partially or totally in the adjoining States of Oregon, California,…

Information Profiles of Indian Reservations in Arizona, Nevada, & Utah.

ERIC Educational Resources Information Center

Bureau of Indian Affairs (Dept. of Interior), Phoenix, AZ.

Based on information provided by Bureau of Indian Affairs (BIA) Agency Offices and by the Indian Health Service, this publication provides profiles of 45 Indian reservations located in Arizona, Nevada, and Utah. These profiles include data on reservations located partially or totally in the adjoining states of Oregon, Idaho, California, and New…

An android application for crime analysis in San Diego

NASA Astrophysics Data System (ADS)

Gonchikara, Likhita

Over the past few years, smartphone adoption has increased worldwide. In this era of smartphones, one of the easiest ways to make this information available to many users is through smartphone applications. Smartphone applications can provide requested information in a readable and user friendly format. Information related to data such as real estate, property, post offices, crime locations and many others can be very useful. Such information helps city planners, residents, students and commuters to identify and communicate trends and patterns about places. ESRI`s ARCGIS provides various services and tools which help visualize real-world features, discover patterns, obtain information, and communicate that information to others. When these services work in conjunction with GPS based location services in smartphones, they create new avenues for applications. This thesis implements an Android smartphone application with features to analyze location based crime data. The user of this application can view crime data in a region and filter different crime types. The application allows the user to query and analyze crimes that have occurred near his location or at a location of interest. The application includes features to measure distance between crime spots and also measure area on the map. The user can also switch the base-map from street map to NatGeo map. Powered with this information, renters and home buyers can ensure that their new home is in a safe location. Real estate agents can buy or sell property in safer locations. Commuters can find routes which avoid crime spots. Tourists can find accommodation in safer places. Students can be aware of the high crime rate areas around the school campus. This application uses ArcGIS feature service by ESRI to render all data on the map.

Spatial variability of soil carbon stock in the Urucu river basin, Central Amazon-Brazil.

PubMed

Ceddia, Marcos Bacis; Villela, André Luis Oliveira; Pinheiro, Érika Flávia Machado; Wendroth, Ole

2015-09-01

The Amazon Forest plays a major role in C sequestration and release. However, few regional estimates of soil organic carbon (SOC) stock in this ecoregion exist. One of the barriers to improve SOC estimates is the lack of recent soil data at high spatial resolution, which hampers the application of new methods for mapping SOC stock. The aims of this work were: (i) to quantify SOC stock under undisturbed vegetation for the 0-30 and the 0-100 cm under Amazon Forest; (ii) to correlate the SOC stock with soil mapping units and relief attributes and (iii) to evaluate three geostatistical techniques to generate maps of SOC stock (ordinary, isotopic and heterotopic cokriging). The study site is located in the Central region of Amazon State, Brazil. The soil survey covered the study site that has an area of 80 km(2) and resulted in a 1:10,000 soil map. It consisted of 315 field observations (96 complete soil profiles and 219 boreholes). SOC stock was calculated by summing C stocks by horizon, determined as a product of BD, SOC and the horizon thickness. For each one of the 315 soil observations, relief attributes were derived from a topographic map to understand SOC dynamics. The SOC stocks across 30 and 100 cm soil depth were 3.28 and 7.32 kg C m(-2), respectively, which is, 34 and 16%, lower than other studies. The SOC stock is higher in soils developed in relief forms exhibiting well-drained soils, which are covered by Upland Dense Tropical Rainforest. Only SOC stock in the upper 100 cm exhibited spatial dependence allowing the generation of spatial variability maps based on spatial (co)-regionalization. The CTI was inversely correlated with SOC stock and was the only auxiliary variable feasible to be used in cokriging interpolation. The heterotopic cokriging presented the best performance for mapping SOC stock. Copyright © 2015 Elsevier B.V. All rights reserved.

Marsh canopy leaf area and orientation calculated for improved marsh structure mapping

USGS Publications Warehouse

Ramsey, Elijah W.; Rangoonwala, Amina; Jones, Cathleen E.; Bannister, Terri

2015-01-01

An approach is presented for producing the spatiotemporal estimation of leaf area index (LAI) of a highly heterogeneous coastal marsh without reliance on user estimates of marsh leaf-stem orientation. The canopy LAI profile derivation used three years of field measured photosynthetically active radiation (PAR) vertical profiles at seven S. alterniflora marsh sites and iterative transform of those PAR attenuation profiles to best-fit light extinction coefficients (KM). KM sun zenith dependency was removed obtaining the leaf angle distribution (LAD) representing the average marsh orientation and the LAD used to calculate the LAI canopy profile. LAI and LAD reproduced measured PAR profiles with 99% accuracy and corresponded to field documented structures. LAI and LAD better reflect marsh structure and results substantiate the need to account for marsh orientation. The structure indexes are directly amenable to remote sensing spatiotemporal mapping and offer a more meaningful representation of wetland systems promoting biophysical function understanding.

ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping.

PubMed

Lou, Shao-Ke; Ni, Bing; Lo, Leung-Yau; Tsui, Stephen Kwok-Wing; Chan, Ting-Fung; Leung, Kwong-Sak

2011-02-01

Sequencing reads generated by RNA-sequencing (RNA-seq) must first be mapped back to the genome through alignment before they can be further analyzed. Current fast and memory-saving short-read mappers could give us a quick view of the transcriptome. However, they are neither designed for reads that span across splice junctions nor for repetitive reads, which can be mapped to multiple locations in the genome (multi-reads). Here, we describe a new software package: ABMapper, which is specifically designed for exploring all putative locations of reads that are mapped to splice junctions or repetitive in nature. The software is freely available at: http://abmapper.sourceforge.net/. The software is written in C++ and PERL. It runs on all major platforms and operating systems including Windows, Mac OS X and LINUX.

Determinations of ionosphere and plasmasphere electron content for an African chain of GPS stations

NASA Astrophysics Data System (ADS)

Mazzella, Andrew J., Jr.; Bosco Habarulema, John; Yizengaw, Endawoke

2017-05-01

The confluence of recent instrumentation deployments in Africa with developments for the determination of plasmasphere electron content using Global Positioning System (GPS) receivers has provided new opportunities for investigations in that region. This investigation, using a selected chain of GPS stations, extends the method (SCORPION) previously applied to a chain of GPS stations in North America in order to separate the ionosphere and plasmasphere contributions to the total electron content (TEC) during a day (24 July) in 2011. The results span latitudes from the southern tip of Africa, across the Equator, to the southern Arabian Peninsula, providing a continuous latitudinal profile for both the ionosphere and plasmasphere during this day.The peak diurnal vertical ionosphere electron content (IEC) increases from about 14 TEC units (1 TEC unit = 1016 electrons m-2) at the southernmost station to about 32 TEC units near the geographic equator, then decreases to about 28 TEC units at the Arabian Peninsula. The peak diurnal slant plasmasphere electron content (PEC) varies between about 4 and 7 TEC units among the stations, with a local latitudinal profile that is significantly influenced by the viewing geometry at the station location, relative to the magnetic field configuration. In contrast, the peak vertical PEC varies between about 1 and 6 TEC units among the stations, with a more uniform latitudinal variation.Comparisons to other GPS data analyses are also presented for TEC, indicating the influence of the PEC on the determination of latitudinal TEC variations and also on the absolute TEC levels, by inducing an overestimate of the receiver bias. The derived TEC latitudinal profiles, in comparison to global map profiles, tend to differ from the map results only about as much as the map results differ among themselves. A combination of ionosonde IEC and alternative GPS TEC measurements, which in principle permits a PEC determination through their difference, was compared to the composite and separate ionosphere and plasmasphere contributions derived solely by the SCORPION method for one station. Although there is considerably more scatter in the PEC values derived from the difference of the GPS TEC and ionosonde IEC measurements compared to the PEC values derived by the SCORPION method, the average overhead values for this day are comparable for the two methods, near 2 TEC units, at the South African site examined.This initial investigation provides a basis for day-to-day TEC monitoring for Africa, with separate ionosphere and plasmasphere electron content determinations.

Digital representation of exposures of Precambrian bedrock in parts of Dickinson and Iron Counties, Michigan, and Florence and Marinette Counties, Wisconsin

USGS Publications Warehouse

Cannon, William F.; Schulte, Ruth; Bickerstaff, Damon

2018-04-04

The U.S. Geological Survey (USGS) conducted a program of bedrock geologic mapping in much of the central and western Upper Peninsula of Michigan from the 1940s until the late 1990s. Geologic studies in this region are hampered by a scarcity of bedrock exposures because of a nearly continuous blanket of unconsolidated sediments resulting from glaciation of the region during the Pleistocene ice ages. The USGS mapping, done largely at a scale of 1:24,000, routinely recorded the location and extent of exposed bedrock to provide both an indication of where direct observations were made and a guide for future investigations to expedite location of observable rock exposures. The locations of outcrops were generally shown as colored or patterned overlays on printed geologic maps. Although those maps have been scanned and are available as Portable Document Format (PDF) files, no further digital portrayal of the outcrops had been done. We have conducted a prototype study of digitizing and improving locational accuracy of the outcrop locations in parts of Dickinson County, Michigan, to form a data layer that can be used with other data layers in geographic information system applications.

Mines, prospects, and occurrences of nonmetallic mineral commodities in the Greenville 1 degree by 2 degrees Quadrangle, South Carolina, Georgia, and North Carolina

USGS Publications Warehouse

D'Agostino, John P.; O'Connor, Bruce J.; Zupan, Alan J.W.; Maybin, Arthur H.

1994-01-01

Mines, prospects, and occurrences of nonmetal mineral commodities in the Greenville 1° x 2° quadrangle are tabulated in this report. There are 488 symbols representing 579 mines, prospects, and occurrences located in the quadrangle. There are 379 symbols used for 466 features in Georgia, 106 symbols for 110 features in South Carolina, and 3 symbols for 3 features in North Carolina. The table lists, in consecutive orders for each county (fig. 1), the map number of each feature, which correlates and locates the item on the accompanying Greenville 1° x 2° quadrangle map. Also listed are the known name of the feature; the 7.5 topographic map on which the commodity site is located; the Transverse Mercator (UTM) northing and easting grid coordinates from the appropriate 7.5’ topographic map; the commodity; remarks; and references. Some locations are known, but many sites are not verified and their locations are only approximate. Reference are listed in References Cited and referred to by number to save space. The generalized tectonic framework for the quadrangle is shown in figure 2.

Validation of projective mapping as potential sensory screening tool for application by the honeybush herbal tea industry.

PubMed

Moelich, Erika Ilette; Muller, Magdalena; Joubert, Elizabeth; Næs, Tormod; Kidd, Martin

2017-09-01

Honeybush herbal tea is produced from the endemic South African Cyclopia species. Plant material subjected to a high-temperature oxidation step ("fermentation") forms the bulk of production. Production lags behind demand forcing tea merchants to use blends of available material to supply local and international markets. The distinct differences in the sensory profiles of the herbal tea produced from the different Cyclopia species require that special care is given to blending to ensure a consistent, high quality product. Although conventional descriptive sensory analysis (DSA) is highly effective in providing a detailed sensory profile of herbal tea infusions, industry requires a method that is more time- and cost-effective. Recent advances in sensory science have led to the development of rapid profiling methodologies. The question is whether projective mapping can successfully be used for the sensory characterisation of herbal tea infusions. Trained assessors performed global and partial projective mapping to determine the validity of this technique for the sensory characterisation of infusions of five Cyclopia species. Similar product configurations were obtained when comparing results of DSA and global and partial projective mapping. Comparison of replicate sessions showed RV coefficients >0.8. A similarity index, based on multifactor analysis, was calculated to determine assessor repeatability. Global projective mapping, demonstrated to be a valid method for providing a broad sensory characterisation of Cyclopia species, is thus suitable as a rapid quality control method of honeybush infusions. Its application by the honeybush industry could improve the consistency of the sensory profile of blended products. Copyright © 2017 Elsevier Ltd. All rights reserved.

Main features of anthropogenic inner-urban soils in Szeged, Hungary

NASA Astrophysics Data System (ADS)

Puskás, Irén.; Farsang, Andrea

2010-05-01

At the beginning of the 21st century, due to the intensive urbanization it is necessary to gather more and more information on altered physical, chemical and biological parameters of urban soils in order to ensure their suitable management and protection for appropriate living conditions. Nowadays, these measures are very relevant since negative environmental effects can modify the soil forming factors in cities. Szeged, the 4th largest city of Hungary, proved to be an ideal sampling area for the research of urban soils since its original surface has been altered by intensive anthropogenic activities. The main objectives of my research are the investigation, description and evaluation of the altered soils in Szeged. For the physical and chemical analysis (humus, nitrogen, carbonate content, heavy metals, pH, artefacts etc.) of soils 124 samples were taken from the horizons of 25 profiles in Szeged and its peripherals (as control samples). The profiles were sampled at sites affected by different extent of artificial infill according to infill maps (1. profiles fully made up of infill; 2. so-called mixed profiles consisting of considerable amount of infill material and buried soil horizons; 3. natural profiles located in the peripherals of the city). With the help of the above-mentioned parameters, the studied soils of Szeged were assigned into the classification system of WRB(2006), which classifies the soils of urban and industrial areas as an individual soil group (under the term Technosols) for the first time. In accordance with the WRB(2006) nomenclature three main soil types can be identified in Szeged with respect to the degree of human influence: profiles slightly influenced, strongly modified, completely altered by human activities. During this poster, we present the peculiarities of typical urban profiles strongly and completely altered by human influence. Most profiles were placed into the group of Technosols due to the considerable transformation of their diagnostic properties (e.g. coverage by artificial objects, intensive compaction, horizontal and vertical variability, abrupt colour and textural changes usually high amount of artefacts, irregular fluctuation of diagnostic properties along the profiles, anthropogenic parent material, high pH and carbonate content, poor humus quality, mainly sand, sandy loam texture etc.). Transformations were best reflected by suffixes such as Ekranic, Urbic, Linic. Among the suffix qualifiers Calcaric, Ruptic, Densic and Arenic were used the most frequently. Furthermore, we found that some of the studied profiles were not situated in the city centre. Consequently, the location of these profiles in the city centre is not necessary since local influences can overwhelm the effect of artificial infill. Considering all the profiles, two of them in city centre can be consider to be the most anthropogenic: profile No. 11 [Ekranic Technosol (Ruptic, Toxic, Endoclayic)] and profile No. 22 [Urbic Technosol (Calcaric, Ruptic, Densic, Arenic)]. It can be claimed that profile No. 11 with "technic hard rock" has the least chance to experience pedogenetic processes since the horizons are covered by thick, surface artificial object, and isolated from the outside world. However, in case of profile No. 22 with dense vegetation and without surface artificial object, the high amount of artefact inhibits pedogenesis.

30 CFR 75.1200-1 - Additional information on mine map.

Code of Federal Regulations, 2010 CFR

2010-07-01

... SAFETY AND HEALTH MANDATORY SAFETY STANDARDS-UNDERGROUND COAL MINES Maps § 75.1200-1 Additional... symbols; (g) The location of railroad tracks and public highways leading to the mine, and mine buildings... permanent base line points coordinated with the underground and surface mine traverses, and the location and...

75 FR 5930 - Proposed Flood Elevation Determinations

Federal Register 2010, 2011, 2012, 2013, 2014

2010-02-05

... include BFEs located on the stream reach between the referenced locations above. Please refer to the... 20472. ADDRESSES City of Fort Ransom Maps are available for inspection at P.O. Box 17, Fort Ransom, ND 58033. City of Lisbon Maps are available for inspection at P.O. Box 1079, Lisbon, ND 58054...

30 CFR 773.6 - Public participation in permit processing.

Code of Federal Regulations, 2012 CFR

2012-07-01

... address of the applicant. (ii) A map or description which clearly shows or describes the precise location... information which would identify the location. If a map is used, it shall indicate the north direction. (iii... operation, including the U.S. Department of Agriculture Soil Conservation Service district office, the local...

30 CFR 773.6 - Public participation in permit processing.

Code of Federal Regulations, 2013 CFR

2013-07-01

... address of the applicant. (ii) A map or description which clearly shows or describes the precise location... information which would identify the location. If a map is used, it shall indicate the north direction. (iii... operation, including the U.S. Department of Agriculture Soil Conservation Service district office, the local...

30 CFR 773.6 - Public participation in permit processing.

Code of Federal Regulations, 2014 CFR

2014-07-01

... address of the applicant. (ii) A map or description which clearly shows or describes the precise location... information which would identify the location. If a map is used, it shall indicate the north direction. (iii... operation, including the U.S. Department of Agriculture Soil Conservation Service district office, the local...

Demographic Mapping via Computer Graphics.

ERIC Educational Resources Information Center

Banghart, Frank W.; And Others

A computerized system, developed at Florida State University, is designed to locate students and resources on a geographic network. Using addresses of resources and students as input, the system quickly and accurately locates the addresses on a grid and creates a map showing their distribution. This geographical distribution serves as an…

Design of a 3-D Magnetic Mapping System to Locate Reinforcing Steel in Concrete Pavements : Technical Summary

DOT National Transportation Integrated Search

2017-12-01

This report outlines the design, fabrication, and testing of a 3-D magnetic mapping system used to locate reinforcing steel in concrete pavements developed at Kansas State University (KSU) in 2006. The magnetic sensing functionality is based on the p...

NOAA Office of Exploration and Research > Education > NOAA Initiatives

Science.gov Websites

Organization Guiding Documents Organizational Structure Map of Staff and Affiliate Locations Strategic Plan Evaluation Education NOAA Initiatives Home About OER Overview Organization Guiding Documents Organizational Structure Map of Staff and Affiliate Locations Strategic Plan 2014 Funding Opportunities Contact Us Program

NOAA Office of Exploration and Research > Education > Alliance Partners

Science.gov Websites

Organization Guiding Documents Organizational Structure Map of Staff and Affiliate Locations Strategic Plan Evaluation Education Alliance Partners Home About OER Overview Organization Guiding Documents Organizational Structure Map of Staff and Affiliate Locations Strategic Plan 2014 Funding Opportunities Contact Us Program

30 CFR 57.11053 - Escape and evacuation plans.

Code of Federal Regulations, 2013 CFR

2013-07-01

... from the date of the last review. The plan shall include: (a) Mine maps or diagrams showing directions of principal air flow, location of escape routes and locations of existing telephones, primary fans... maps or diagrams shall be posted at all shaft stations and in underground shops, lunchrooms, and...

30 CFR 57.11053 - Escape and evacuation plans.

Code of Federal Regulations, 2014 CFR

2014-07-01

... from the date of the last review. The plan shall include: (a) Mine maps or diagrams showing directions of principal air flow, location of escape routes and locations of existing telephones, primary fans... maps or diagrams shall be posted at all shaft stations and in underground shops, lunchrooms, and...

30 CFR 57.11053 - Escape and evacuation plans.

Code of Federal Regulations, 2011 CFR

2011-07-01

... from the date of the last review. The plan shall include: (a) Mine maps or diagrams showing directions of principal air flow, location of escape routes and locations of existing telephones, primary fans... maps or diagrams shall be posted at all shaft stations and in underground shops, lunchrooms, and...

30 CFR 57.11053 - Escape and evacuation plans.

Code of Federal Regulations, 2012 CFR

2012-07-01

... from the date of the last review. The plan shall include: (a) Mine maps or diagrams showing directions of principal air flow, location of escape routes and locations of existing telephones, primary fans... maps or diagrams shall be posted at all shaft stations and in underground shops, lunchrooms, and...

30 CFR 57.11053 - Escape and evacuation plans.

Code of Federal Regulations, 2010 CFR

2010-07-01

... from the date of the last review. The plan shall include: (a) Mine maps or diagrams showing directions of principal air flow, location of escape routes and locations of existing telephones, primary fans... maps or diagrams shall be posted at all shaft stations and in underground shops, lunchrooms, and...

Lung-MAP Clinical Trial

Cancer.gov

A collection of material about the Lung-MAP study, which will examine treatment outcomes for patients with squamous cell lung cancer assigned to different targeted drugs based on the results of genomic tumor profiling.

An assessment of regional differences in corneal thickness in normal human eyes, using the Orbscan II or ultrasound pachymetry.

PubMed

Doughty, Michael J; Jonuscheit, Sven

2007-04-01

In recent years, there has been increasing interest in the characteristics of the peripheral cornea close to the limbus, in both tonometry measures and refractive surgery, but there is relatively little information on these characteristics as provided by modern day pachymetry instruments such as the Orbscan (Bausch & Lomb, Rochester, New York). The current study was therefore undertaken to assess the corneal thickness profile along the horizontal meridian by this scanning slit light method, comparing the data with that obtained with an ultrasound pachymeter. Noncontact specular microscopy was first performed on 17 adults (aged between 20 and 64 years) to check that the corneas were normal. Then, 3 assessments of the corneal thickness profile across the horizontal meridian were taken using the Orbscan II, and both the regional map data (7-mm-diameter measurement ring, 1-mm sample zones) and the point data from the numerical pachymetry output were used to extract data at specific locations nominally 0.5 mm apart. Ultrasound pachymetry (under topical anesthesia with benoxinate 0.4%) was then used to obtain thickness values at central, mid-peripheral (2.75 mm), and peripheral locations close to the limbus (4.5 mm). Specular microscopy yielded mean thickness of 0.529 +/- 0.032 mm, whereas single-point Orbscan readings at the geometric center of the cornea averaged 0.579 +/- 0.037 mm. Orbscan readings around the 7-mm-diameter measurement zone along the horizontal meridian averaged 0.681 +/- 0.034 mm (i.e., were 0.101 mm or 17.6% greater; P < 0.001). Mid-peripheral readings taken from the numerical maps at 2.5 to 3.0 mm averaged 0.645 mm (or 11% higher than central point readings), whereas peripheral readings between 4.0 and 4.5 mm averaged 0.727 mm (i.e., 26% higher than central point values). In marked contrast, ultrasound readings in the mid-periphery (2.75 mm) averaged just 0.553 mm (or 5.5% greater than the central corneal thickness [CCT]) and just 0.612 mm (i.e., 16.6% higher) in the periphery (4.5 mm). CCT profiles generated from the Orbscan numerical output across the horizontal meridian showed a predictable progressive increase in thickness from the center to the 4.5-mm location on both the temporal and nasal side. The mean differences between the Orbscan II and ultrasound pachymetry measures were thus not constant across the cornea. Without correction, these differences were close to 0.05 mm at the center but more than 0.100 mm at the peripheral sites, and proportional differences persisted after application of the default acoustic factor of 0.92 for the Orbscan readings. Orbscan II and ultrasound pachymetry measures generate a rather different profile for corneal thickness. The data from the 2 techniques should be considered as reporting different characteristics, rather than attempts being made to align Orbscan measurements to those of the ultrasound method. A single acoustic correction factor cannot be logically applied to all corneal thickness measures made with an Orbscan II.

System and method for image mapping and visual attention

NASA Technical Reports Server (NTRS)

Peters, II, Richard A. (Inventor)

2010-01-01

A method is described for mapping dense sensory data to a Sensory Ego Sphere (SES). Methods are also described for finding and ranking areas of interest in the images that form a complete visual scene on an SES. Further, attentional processing of image data is best done by performing attentional processing on individual full-size images from the image sequence, mapping each attentional location to the nearest node, and then summing attentional locations at each node.

System and method for image mapping and visual attention

NASA Technical Reports Server (NTRS)

Peters, II, Richard A. (Inventor)

2011-01-01

A method is described for mapping dense sensory data to a Sensory Ego Sphere (SES). Methods are also described for finding and ranking areas of interest in the images that form a complete visual scene on an SES. Further, attentional processing of image data is best done by performing attentional processing on individual full-size images from the image sequence, mapping each attentional location to the nearest node, and then summing all attentional locations at each node.

Voxel-based lesion mapping of meningioma: a comprehensive lesion location mapping of 260 lesions.

PubMed

Hirayama, Ryuichi; Kinoshita, Manabu; Arita, Hideyuki; Kagawa, Naoki; Kishima, Haruhiko; Hashimoto, Naoya; Fujimoto, Yasunori; Yoshimine, Toshiki

2018-06-01

OBJECTIVE In the present study the authors aimed to determine preferred locations of meningiomas by avoiding descriptive analysis and instead using voxel-based lesion mapping and 3D image-rendering techniques. METHODS Magnetic resonance images obtained in 248 treatment-naïve meningioma patients with 260 lesions were retrospectively and consecutively collected. All images were registered to a 1-mm isotropic, high-resolution, T1-weighted brain atlas provided by the Montreal Neurological Institute (the MNI152), and a lesion frequency map was created, followed by 3D volume rendering to visualize the preferred locations of meningiomas in 3D. RESULTS The 3D lesion frequency map clearly showed that skull base structures such as parasellar, sphenoid wing, and petroclival regions were commonly affected by the tumor. The middle one-third of the superior sagittal sinus was most commonly affected in parasagittal tumors. Substantial lesion accumulation was observed around the leptomeninges covering the central sulcus and the sylvian fissure, with very few lesions observed at the frontal, parietal, and occipital convexities. CONCLUSIONS Using an objective visualization method, meningiomas were shown to be located around the middle third of the superior sagittal sinus, the perisylvian convexity, and the skull base. These observations, which are in line with previous descriptive analyses, justify further use of voxel-based lesion mapping techniques to help understand the biological nature of this disease.

Archive of digital boomer seismic reflection data collected offshore east-central Florida during USGS cruise 00FGS01, July 14-22, 2000

USGS Publications Warehouse

Subino, Janice A.; Dadisman, Shawn V.; Wiese, Dana S.; Calderon, Karynna; Phelps, Daniel C.

2009-01-01

In July of 2000, the U.S. Geological Survey (USGS), in cooperation with the Florida Geological Survey (FGS), conducted a geophysical survey of the Atlantic Ocean offshore Florida's east coast from Brevard County to northern Martin County. This report serves as an archive of unprocessed digital boomer seismic reflection data, trackline maps, navigation files, Geographic Information System (GIS) information, digital and handwritten Field Activity Collection System (FACS) logs, and Federal Geographic Data Committee (FGDC) metadata. A filtered and gained (a relative increase in signal amplitude) digital image of each seismic profile is also provided. Refer to the Acronyms page for expansions of all acronyms and abbreviations used in this report. The archived trace data are in standard Society of Exploration Geophysicists (SEG) SEG-Y format (Barry and others, 1975) and may be downloaded and processed with commercial or public domain software such as Seismic Unix (SU) (Cohen and Stockwell, 2005). Example SU processing scripts and USGS Software for viewing the SEG-Y files (Zihlman, 1992) are also provided. The USGS St. Petersburg Coastal and Marine Science Center assigns a unique identifier to each cruise or field activity. For example, 00FGS01 tells us the data were collected in 2000 for cooperative work with the Florida Geological Survey (FGS) and the data were collected during the first field activity for that study in that calendar year. Refer to http://walrus.wr.usgs.gov/infobank/programs/html/definition/activity.html for a detailed description of the method used to assign the field activity ID. The boomer plate is an acoustic energy source that consists of capacitors charged to a high voltage and discharged through a transducer in the water. The transducer is towed on a sled floating on the water surface and when discharged, emits a short acoustic pulse, or shot, which propagates through the water, sediment column, or rock beneath. The acoustic energy is reflected at density boundaries (such as the seafloor, sediment, or rock layers beneath the seafloor), detected by the receiver, and recorded by a PC-based seismic acquisition system. This process is repeated at timed intervals (for example, 0.5 s) and recorded for specific intervals of time (for example, 100 ms). In this way, a two-dimensional (2D) vertical profile of the shallow geologic structure beneath the ship track is produced. Figure 1 displays the acquisition geometry. Refer to table 1 for a summary of acquisition parameters. The unprocessed seismic data are stored in SEG-Y format (Barry and others, 1975). For a detailed description of the data format, refer to the SEG-Y Format page. See the How To Download SEG-Y Data page for download instructions. The printable profiles provided are GIF images that were filtered and gained using Seismic Unix software. Refer to the Software page for details about the processing and examples of the processing scripts. The printable profiles can be viewed from the Profiles page or from links located on the trackline maps. To view the trackline maps and navigation files, and for more information about these items, see the Navigation page. Detailed information about the navigation system used can be found in table 1. Of a total record length of 200 ms, only the upper 100 ms of each profile are displayed because no useful information was observed deeper in the sections. A 10 ms deep water delay appears on lines b57-b63 and sl2-sl28. No digital data were collected for line sl6. However, line sl6r is a second attempt to collect digital data for this line. Digital data and 500-shot-interval location navigation are not available for the last 1,161 shots of line sl26 due to an equipment malfunction.

Weather Regulates Location, Timing, and Intensity of Dengue Virus Transmission between Humans and Mosquitoes

PubMed Central

Campbell, Karen M.; Haldeman, Kristin; Lehnig, Chris; Munayco, Cesar V.; Halsey, Eric S.; Laguna-Torres, V. Alberto; Yagui, Martín; Morrison, Amy C.; Lin, Chii-Dean; Scott, Thomas W.

2015-01-01

Background Dengue is one of the most aggressively expanding mosquito-transmitted viruses. The human burden approaches 400 million infections annually. Complex transmission dynamics pose challenges for predicting location, timing, and magnitude of risk; thus, models are needed to guide prevention strategies and policy development locally and globally. Weather regulates transmission-potential via its effects on vector dynamics. An important gap in understanding risk and roadblock in model development is an empirical perspective clarifying how weather impacts transmission in diverse ecological settings. We sought to determine if location, timing, and potential-intensity of transmission are systematically defined by weather. Methodology/Principal Findings We developed a high-resolution empirical profile of the local weather-disease connection across Peru, a country with considerable ecological diversity. Applying 2-dimensional weather-space that pairs temperature versus humidity, we mapped local transmission-potential in weather-space by week during 1994-2012. A binary classification-tree was developed to test whether weather data could classify 1828 Peruvian districts as positive/negative for transmission and into ranks of transmission-potential with respect to observed disease. We show that transmission-potential is regulated by temperature-humidity coupling, enabling epidemics in a limited area of weather-space. Duration within a specific temperature range defines transmission-potential that is amplified exponentially in higher humidity. Dengue-positive districts were identified by mean temperature >22°C for 7+ weeks and minimum temperature >14°C for 33+ weeks annually with 95% sensitivity and specificity. In elevated-risk locations, seasonal peak-incidence occurred when mean temperature was 26-29°C, coincident with humidity at its local maximum; highest incidence when humidity >80%. We profile transmission-potential in weather-space for temperature-humidity ranging 0-38°C and 5-100% at 1°C x 2% resolution. Conclusions/Significance Local duration in limited areas of temperature-humidity weather-space identifies potential locations, timing, and magnitude of transmission. The weather-space profile of transmission-potential provides needed data that define a systematic and highly-sensitive weather-disease connection, demonstrating separate but coupled roles of temperature and humidity. New insights regarding natural regulation of human-mosquito transmission across diverse ecological settings advance our understanding of risk locally and globally for dengue and other mosquito-borne diseases and support advances in public health policy/operations, providing an evidence-base for modeling, predicting risk, and surveillance-prevention planning. PMID:26222979

GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies.

PubMed

Kim, Jeremie S; Senol Cali, Damla; Xin, Hongyi; Lee, Donghyuk; Ghose, Saugata; Alser, Mohammed; Hassan, Hasan; Ergin, Oguz; Alkan, Can; Mutlu, Onur

2018-05-09

Seed location filtering is critical in DNA read mapping, a process where billions of DNA fragments (reads) sampled from a donor are mapped onto a reference genome to identify genomic variants of the donor. State-of-the-art read mappers 1) quickly generate possible mapping locations for seeds (i.e., smaller segments) within each read, 2) extract reference sequences at each of the mapping locations, and 3) check similarity between each read and its associated reference sequences with a computationally-expensive algorithm (i.e., sequence alignment) to determine the origin of the read. A seed location filter comes into play before alignment, discarding seed locations that alignment would deem a poor match. The ideal seed location filter would discard all poor match locations prior to alignment such that there is no wasted computation on unnecessary alignments. We propose a novel seed location filtering algorithm, GRIM-Filter, optimized to exploit 3D-stacked memory systems that integrate computation within a logic layer stacked under memory layers, to perform processing-in-memory (PIM). GRIM-Filter quickly filters seed locations by 1) introducing a new representation of coarse-grained segments of the reference genome, and 2) using massively-parallel in-memory operations to identify read presence within each coarse-grained segment. Our evaluations show that for a sequence alignment error tolerance of 0.05, GRIM-Filter 1) reduces the false negative rate of filtering by 5.59x-6.41x, and 2) provides an end-to-end read mapper speedup of 1.81x-3.65x, compared to a state-of-the-art read mapper employing the best previous seed location filtering algorithm. GRIM-Filter exploits 3D-stacked memory, which enables the efficient use of processing-in-memory, to overcome the memory bandwidth bottleneck in seed location filtering. We show that GRIM-Filter significantly improves the performance of a state-of-the-art read mapper. GRIM-Filter is a universal seed location filter that can be applied to any read mapper. We hope that our results provide inspiration for new works to design other bioinformatics algorithms that take advantage of emerging technologies and new processing paradigms, such as processing-in-memory using 3D-stacked memory devices.

Mapping QTL for Omega-3 Content in Hybrid Saline Tilapia.

PubMed

Lin, Grace; Wang, Le; Ngoh, Si Te; Ji, Lianghui; Orbán, Laszlo; Yue, Gen Hua

2018-02-01

Tilapia is one of most important foodfish species. The low omega-3 to omega-6 fatty acid ratio in freshwater tilapia meat is disadvantageous for human health. Increasing omega-3 content is an important task in breeding to increase the nutritional value of tilapia. However, conventional breeding to increase omega-3 content is difficult and slow. To accelerate the increase of omega-3 through marker-assisted selection (MAS), we conducted QTL mapping for fatty acid contents and profiles in a F 2 family of saline tilapia generated by crossing red tilapia and Mozambique tilapia. The total omega-3 content in F 2 hybrid tilapia was 2.5 ± 1.0 mg/g, higher than that (2.00 mg/g) in freshwater tilapia. Genotyping by sequencing (GBS) technology was used to discover and genotype SNP markers, and microsatellites were also genotyped. We constructed a linkage map with 784 markers (151 microsatellites and 633 SNPs). The linkage map was 2076.7 cM long and consisted of 22 linkage groups. Significant and suggestive QTL for total lipid content were mapped on six linkage groups (LG3, -4, -6, -8, -13, and -15) and explained 5.8-8.3% of the phenotypic variance. QTL for omega-3 fatty acids were located on four LGs (LG11, -18, -19, and -20) and explained 5.0 to 7.5% of the phenotypic variance. Our data suggest that the total lipid and omega-3 fatty acid content were determined by multiple genes in tilapia. The markers flanking the QTL for omega-3 fatty acids can be used in MAS to accelerate the genetic improvements of these traits in salt-tolerant tilapia.

Association mapping of seed quality traits using the Canadian flax (Linum usitatissimum L.) core collection.

PubMed

Soto-Cerda, Braulio J; Duguid, Scott; Booker, Helen; Rowland, Gordon; Diederichsen, Axel; Cloutier, Sylvie

2014-04-01

The identification of stable QTL for seed quality traits by association mapping of a diverse panel of linseed accessions establishes the foundation for assisted breeding and future fine mapping in linseed. Linseed oil is valued for its food and non-food applications. Modifying its oil content and fatty acid (FA) profiles to meet market needs in a timely manner requires clear understanding of their quantitative trait loci (QTL) architectures, which have received little attention to date. Association mapping is an efficient approach to identify QTL in germplasm collections. In this study, we explored the quantitative nature of seed quality traits including oil content (OIL), palmitic acid, stearic acid, oleic acid, linoleic acid (LIO) linolenic acid (LIN) and iodine value in a flax core collection of 390 accessions assayed with 460 microsatellite markers. The core collection was grown in a modified augmented design at two locations over 3 years and phenotypic data for all seven traits were obtained from all six environments. Significant phenotypic diversity and moderate to high heritability for each trait (0.73-0.99) were observed. Most of the candidate QTL were stable as revealed by multivariate analyses. Nine candidate QTL were identified, varying from one for OIL to three for LIO and LIN. Candidate QTL for LIO and LIN co-localized with QTL previously identified in bi-parental populations and some mapped nearby genes known to be involved in the FA biosynthesis pathway. Fifty-eight percent of the QTL alleles were absent (private) in the Canadian cultivars suggesting that the core collection possesses QTL alleles potentially useful to improve seed quality traits. The candidate QTL identified herein will establish the foundation for future marker-assisted breeding in linseed.

Marine geodetic control for geoidal profile mapping across the Puerto Rican Trench

NASA Technical Reports Server (NTRS)

Fubara, D. M.; Mourad, A. G.

1975-01-01

A marine geodetic control was established for the northern end of the geoidal profile mapping experiment across the Puerto Rican Trench by determining the three-dimensional geodetic coordinates of the four ocean-bottom mounted acoustic transponders. The data reduction techniques employed and analytical processes involved are described. Before applying the analytical techniques to the field data, they were tested with simulated data and proven to be effective in theory as well as in practice.

United States crustal thickness

NASA Technical Reports Server (NTRS)

Allenby, R. J.; Schnetzler, C. C.

1983-01-01

The thickness of the crust, the thickness of the basal (intermediate or lower) crustal layer, and the average velocity at the top of the mantle have been mapped using all available deep-penetrating seismic-refraction profiles in the conterminous United States and surrounding border areas. These profiles are indexed to their literature data sources. The more significant long wavelength anomalies on the three maps are briefly discussed and analyzed. An attempt to use Bouguer gravity to validate mantle structure was inconclusive.

Transition Funding for the Shallow Water Integrated Mapping System SWIMS and Modular Microstructure Profiler MMP

DTIC Science & Technology

2013-09-30

the performance of operational and climate models, as well as for understanding local problems such as pollutant dispersal and biological...Mapping System (SWIMS) and Modular Microstructure Profiler (MMP) Matthew H. Alford Applied Physics Laboratory 1013 NE 40th Street Seattle, WA...in Juan de Fuca Submarine Canyon . Measurements were successful. In the next few weeks we will be testing MMP from our local work boat, the R/V Jack

Raman and CT scan mapping of chalcogenide glass diffusion generated gradient index profiles

NASA Astrophysics Data System (ADS)

Lindberg, G. P.; Berg, R. H.; Deegan, J.; Benson, R.; Salvaggio, P. S.; Gross, N.; Weinstein, B. A.; Gibson, D.; Bayya, S.; Sanghera, J.; Nguyen, V.; Kotov, M.

2016-05-01

Metrology of a gradient index (GRIN) material is non-trivial, especially in the realm of infrared and large refractive index. Traditional methods rely on index matching fluids which are not available for indexes as high as those found in the chalcogenide glasses (2.4-3.2). By diffusing chalcogenide glasses of similar composition one can blend the properties in a continuous way. In an effort to measure this we will present data from both x-ray computed tomography scans (CT scans) and Raman mapping scans of the diffusion profiles. Proof of concept measurements on undiffused bonded sheets of chalcogenide glasses were presented previously. The profiles measured will be of axially stacked sheets of chalcogenide glasses diffused to create a linear GRIN profile and nested tubes of chalcogenide glasses diffused to create a radial parabolic GRIN profile. We will show that the x-ray absorption in the CT scan and the intensity of select Raman peaks spatially measured through the material are indicators of the concentration of the diffusion ions and correlate to the spatial change in refractive index. We will also present finite element modeling (FEM) results and compare them to post precision glass molded (PGM) elements that have undergone CT and Raman mapping.

Visualization of Subsurface Defects in Composites using a Focal Plane Array Infrared Camera

NASA Technical Reports Server (NTRS)

Plotnikov, Yuri A.; Winfree, William P.

1999-01-01

A technique for enhanced defect visualization in composites via transient thermography is presented in this paper. The effort targets automated defect map construction for multiple defects located in the observed area. Experimental data were collected on composite panels of different thickness with square inclusions and flat bottom holes of different depth and orientation. The time evolution of the thermal response and spatial thermal profiles are analyzed. The pattern generated by carbon fibers and the vignetting effect of the focal plane array camera make defect visualization difficult. An improvement of the defect visibility is made by the pulse phase technique and the spatial background treatment. The relationship between a size of a defect and its reconstructed image is analyzed as well. The image processing technique for noise reduction is discussed.