Monitoring and evaluation plan for the Nez Perce Tribal Hatchery

DOE Office of Scientific and Technical Information (OSTI.GOV)

Steward, C.R.

1996-08-01

The Nez Perce Tribe has proposed to build and operate the Nez Perce Tribal Hatchery (NPTH) in the Clearwater River subbasin of Idaho for the purpose of restoring self-sustaining populations of spring, summer, and fall chinook salmon to their native habitats. The project comprises a combination of incubation and rearing facilities, satellite rearing facilities, juvenile and adult collection sites, and associated production and harvest management activities. As currently conceived, the NPTH program will produce approximately 768,000 spring chinook parr, 800,000 summer chinook fry, and 2,000,000 fall chinook fry on an annual basis. Hatchery fish would be spawned, reared, and releasedmore » under conditions that promote wild-type characteristics, minimize genetic changes in both hatchery and wild chinook populations, and minimize undesirable ecological interactions. The primary objective is to enable hatchery-produced fish to return to reproduce naturally in the streams in which they are released. These and other characteristics of the project are described in further detail in the Nez Perce Tribal Hatchery Master Plan, the 1995 Supplement to the Master Plan, and the Nez Perce Tribal Hatchery Program Environmental Impact Statement. The report in hand is referred to in project literature as the NPTH Monitoring and Evaluation (M&E) Plan. This report describes monitoring and evaluation activities that will help NPTH managers determine whether they were successful in restoring chinook salmon populations and avoiding adverse ecological impacts.« less

Spring Outmigration of Wild and Hatchery Chinook Salmon and Steelhead Trout Smolts from the Imnaha River, Oregon; 1996 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Blenden, Michael L.; Rocklage, Stephen J.; Kucera, Paul A.

1997-04-01

For the third consecutive year, the Nez Perce Tribe, in conjunction with the Fish Passage Center, participated in the smolt monitoring program in the Imnaha River. A rotary screw trap was used to collect emigrating wild and hatchery chinook salmon (Oncorhynchus tshawytscha) and steelhead trout (Oncorhynchus mykiss) smolts from February 23 to June 24, 1996. A total of 1,797 wild chinook salmon, 11,896 hatchery chinook salmon, 3,786 wild steelhead trout, and 31,094 hatchery steelhead trout smolts were captured during outmigration studies on the Imnaha River in 1996. Mortality associated with trapping, handling and tagging was low, being 1.4% for wildmore » chinook, 0.18% for hatchery chinook, 0.21% for wild steelhead and 0.28% for hatchery steelhead trout smolts.« less

Effective size of a wild salmonid population is greatly reduced by hatchery supplementation

PubMed Central

Christie, M R; Marine, M L; French, R A; Waples, R S; Blouin, M S

2012-01-01

Many declining and commercially important populations are supplemented with captive-born individuals that are intentionally released into the wild. These supplementation programs often create large numbers of offspring from relatively few breeding adults, which can have substantial population-level effects. We examined the genetic effects of supplementation on a wild population of steelhead (Oncorhynchus mykiss) from the Hood River, Oregon, by matching 12 run-years of hatchery steelhead back to their broodstock parents. We show that the effective number of breeders producing the hatchery fish (broodstock parents; Nb) was quite small (harmonic mean Nb=25 fish per brood-year vs 373 for wild fish), and was exacerbated by a high variance in broodstock reproductive success among individuals within years. The low Nb caused hatchery fish to have decreased allelic richness, increased average relatedness, more loci in linkage disequilibrium and substantial levels of genetic drift in comparison with their wild-born counterparts. We also documented a substantial Ryman–Laikre effect whereby the additional hatchery fish doubled the total number of adult fish on the spawning grounds each year, but cut the effective population size of the total population (wild and hatchery fish combined) by nearly two-thirds. We further demonstrate that the Ryman–Laikre effect is most severe in this population when (1) >10% of fish allowed onto spawning grounds are from hatcheries and (2) the hatchery fish have high reproductive success in the wild. These results emphasize the trade-offs that arise when supplementation programs attempt to balance disparate goals (increasing production while maintaining genetic diversity and fitness). PMID:22805657

Snake River Sockeye Salmon Captive Broodstock Program Research Elements : 2007 Annual Project Progess Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Peterson, Mike; Plaster, Kurtis; Redfield, Laura

2008-12-17

On November 20, 1991, the National Oceanic Atmospheric Administration listed Snake River sockeye salmon Oncorhynchus nerka as endangered under the Endangered Species Act of 1973. In 1991, the Shoshone-Bannock Tribes (SBT) and Idaho Department of Fish and Game (IDFG) initiated the Snake River Sockeye Salmon Captive Broodstock Program to conserve and rebuild populations in Idaho. Restoration efforts are focused on Redfish, Pettit, and Alturas lakes within the Sawtooth Valley. The first release of hatchery-produced adults occurred in 1993. The first release of juvenile sockeye salmon from the captive broodstock program occurred in 1994. In 1999, the first anadromous adult returnsmore » from the captive broodstock program were recorded when six jacks and one jill were captured at the IDFG Sawtooth Fish Hatchery. In 2007, progeny from the captive broodstock program were released using four strategies: (1) eyed-eggs were planted in Pettit Lake in November; (2) age-0 presmolts were released to Alturas, Pettit, and Redfish lakes in October; (3) age-1 smolts were released into Redfish Lake Creek and the upper Salmon River in May; and (4) hatchery-produced adult sockeye salmon were released to Redfish Lake for volitional spawning in September. Oncorhynchus nerka population monitoring was conducted on Redfish, Alturas, and Pettit lakes using a midwater trawl in September 2007. Population abundances were estimated at 73,702 fish for Redfish Lake, 124,073 fish for Alturas Lake, and 14,746 fish for Pettit Lake. Angler surveys were conducted from May 26 through August 7, 2007 on Redfish Lake to estimate kokanee harvest. On Redfish Lake, we interviewed 102 anglers and estimated that 56 kokanee were harvested. The calculated kokanee catch rate was 0.03 fish/hour for each kokanee kept. The juvenile out-migrant trap on Redfish Lake Creek was operated from April 14 to June 13, 2007. We estimated that 5,280 natural origin and 14,256 hatchery origin sockeye salmon smolts out-migrated from Redfish Lake in 2007. The hatchery origin component originated from a 2006 fall presmolt direct-release. The juvenile out-migrant traps on Alturas Lake Creek and Pettit Lake Creek were operated by the SBT from April 19 to May 23, 2007 and April 18 to May 29, 2007, respectively. The SBT estimated 1,749 natural origin and 4,695 hatchery origin sockeye salmon smolts out-migrated from Pettit Lake and estimated 8,994 natural origin and 6,897 hatchery origin sockeye salmon smolts out-migrated from Alturas Lake in 2007. The hatchery origin component of sockeye salmon out-migrants originated from fall presmolt direct-releases made to Pettit and Alturas lakes in 2006. In 2007, the Stanley Basin Sockeye Technical Oversight Committee (SBSTOC) chose to have all Snake River sockeye salmon juveniles (tagged and untagged) transported due to potential enhanced survival. Therefore, mainstem survival evaluations were only conducted to Lower Granite Dam. Unique PIT tag interrogations from Sawtooth Valley juvenile out-migrant traps to Lower Granite Dam were utilized to estimate survival rates for out-migrating sockeye salmon smolts. Survival rate comparisons were made between smolts originating from Redfish, Alturas, and Pettit lakes and the various release strategies. Alturas Lake hatchery origin smolts tagged at the out-migrant trap recorded the highest survival rate of 78.0%. In 2007, 494 hatchery origin adult sockeye salmon were released to Redfish Lake for natural spawning. We observed 195 areas of excavation in the lake from spawning events. This was the highest number of redds observed in Redfish Lake since the program was initiated. Suspected redds were approximately 3 m x 3 m in size and were constructed by multiple pairs of adults. To monitor the predator population found within the lakes, we monitored bull trout spawning in Fishhook Creek, a tributary to Redfish Lake; and in Alpine Creek, a tributary to Alturas Lake. This represented the tenth consecutive year that the index reaches have been surveyed on these two streams. Adult counts (41 adults) and redd counts (22 redds) in Fishhook Creek increased compared to counts conducted since monitoring began in 1998. Beginning in 2007, we also surveyed an additional trend site in Fishhook Creek resulting in observing 43 adult bull trout and 30 additional redds. Bull trout numbers (13 adults) and the number of redds observed (18 redds) have gradually increased in Alpine Creek compared to counts from initial monitoring.« less

Evolutionary effects of alternative artificial propagation programs: implications for viability of endangered anadromous salmonids

PubMed Central

McClure, Michelle M; Utter, Fred M; Baldwin, Casey; Carmichael, Richard W; Hassemer, Peter F; Howell, Philip J; Spruell, Paul; Cooney, Thomas D; Schaller, Howard A; Petrosky, Charles E

2008-01-01

Most hatchery programs for anadromous salmonids have been initiated to increase the numbers of fish for harvest, to mitigate for habitat losses, or to increase abundance in populations at low abundance. However, the manner in which these programs are implemented can have significant impacts on the evolutionary trajectory and long-term viability of populations. In this paper, we review the potential benefits and risks of hatchery programs relative to the conservation of species listed under the US Endangered Species Act. To illustrate, we present the range of potential effects within a population as well as among populations of Chinook salmon (Oncorhynchus tshawytscha) where changes to major hatchery programs are being considered. We apply evolutionary considerations emerging from these examples to suggest broader principles for hatchery uses that are consistent with conservation goals. We conclude that because of the evolutionary risks posed by artificial propagation programs, they should not be viewed as a substitute for addressing other limiting factors that prevent achieving viability. At the population level, artificial propagation programs that are implemented as a short-term approach to avoid imminent extinction are more likely to achieve long-term population viability than approaches that rely on long-term supplementation. In addition, artificial propagation programs can have out-of-population impacts that should be considered in conservation planning. PMID:25567637

Do hatchery-reared sea urchins pose a threat to genetic diversity in wild populations?

PubMed Central

Segovia-Viadero, M; Serrão, E A; Canteras-Jordana, J C; Gonzalez-Wangüemert, M

2016-01-01

In salmonids, the release of hatchery-reared fish has been shown to cause irreversible genetic impacts on wild populations. However, although responsible practices for producing and releasing genetically diverse, hatchery-reared juveniles have been published widely, they are rarely implemented. Here, we investigated genetic differences between wild and early-generation hatchery-reared populations of the purple sea urchin Paracentrotus lividus (a commercially important species in Europe) to assess whether hatcheries were able to maintain natural levels of genetic diversity. To test the hypothesis that hatchery rearing would cause bottleneck effects (that is, a substantial reduction in genetic diversity and differentiation from wild populations), we compared the levels and patterns of genetic variation between two hatcheries and four nearby wild populations, using samples from both Spain and Ireland. We found that hatchery-reared populations were less diverse and had diverged significantly from the wild populations, with a very small effective population size and a high degree of relatedness between individuals. These results raise a number of concerns about the genetic impacts of their release into wild populations, particularly when such a degree of differentiation can occur in a single generation of hatchery rearing. Consequently, we suggest that caution should be taken when using hatchery-reared individuals to augment fisheries, even for marine species with high dispersal capacity, and we provide some recommendations to improve hatchery rearing and release practices. Our results further highlight the need to consider the genetic risks of releasing hatchery-reared juveniles into the wild during the establishment of restocking, stock enhancement and sea ranching programs. PMID:26758187

Spokane Tribal Hatchery, 2005 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Peone, Tim L.

2006-03-01

Due to the construction and operation of Grand Coulee Dam (1939), anadromous salmon have been eradicated and resident fish populations permanently altered in the upper Columbia River region. Federal and private hydropower dam operations throughout the Columbia River system severely limits indigenous fish populations in the upper Columbia. Artificial production has been determined appropriate for supporting harvestable fisheries for kokanee salmon (Oncorhynchus nerka) and rainbow trout (Oncorhynchus mykiss) in Lake Roosevelt and Banks Lake (Grand Coulee Dam impoundments). The Spokane Tribe, Washington Department of Fish and Wildlife, Colville Confederated Tribes and Lake Roosevelt Development Association/Lake Roosevelt Volunteer Net Pen Projectmore » are cooperating in a comprehensive artificial production program to produce kokanee salmon (Oncorhynchus nerka) and rainbow trout (Oncorhynchus mykiss) for annual releases into the project area. The program consists of the Spokane Tribal Hatchery, Sherman Creek Hatchery, Ford Trout Hatchery and Lake Roosevelt Rainbow Trout Net Pen Rearing Projects. The Lake Roosevelt and Banks Lake Fisheries Evaluation Program monitor and evaluates release strategies and production methods for the aforementioned projects. Between 1985 and 2005 the projects have collectively produced up to 800,000 rainbow trout and 4 million kokanee salmon for release into Lake Roosevelt and 1.4 million kokanee fry for Banks Lake annually. In 2005, the annual release goal included 3.3 million kokanee fry, 475,000 kokanee yearlings and 500,000 rainbow trout yearlings. Fish produced by this project in 2005 to meet collective fish production and release goals included: 3,446,438 kokanee fingerlings, 347,730 rainbow trout fingerlings and 525,721 kokanee yearlings. Kokanee yearlings were adipose fin clipped before release. Stock composition consisted of Meadow Creek and Lake Whatcom kokanee, diploid-triploid Spokane Trout Hatchery (McCloud River) rainbow trout and Phalon Lake red-band rainbow trout. All kokanee were marked with either thermal, oxytetracyline or fin clips prior to release. Preliminary 2004 Lake Roosevelt fisheries investigations indicate hatchery/net pen stocking significantly contributed to rainbow trout catch and harvest rates while the impact on the kokanee fishery was minimal. Success of the Lake Roosevelt kokanee artificial production program appears to be limited primarily owing to predation, precocity and high entrainment rates through Grand Coulee Dam. Recommendations for future hatchery/net pen operations include use of stocks compatible or native to the upper Columbia River, continue kokanee fry and post-smolt releases, 100% triploid hatchery stock rainbow trout used and adipose fin clip hatchery stock rainbow trout prior to release. The Spokane Tribal Hatchery is funded by the Bonneville Power Administration under directives by the Northwest Power Conservation Council Columbia River Basin Fish & Wildlife Program, Resident Fish Substitution Measures, 1987 to current (Subbasin Plan), as partial mitigation for anadromous and resident fish losses in the blocked areas above Chief Joseph and Grand Coulee Dams.« less

Umatilla Hatchery Monitoring and Evaluation, 1998-1999 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stonecypher, R. Wess; Groberg, Jr., Warren J.; Farman, Brett M.

2001-07-01

The Northwest Power Planning Council's Columbia River Basin Fish and Wildlife Program authorized construction of Umatilla Fish Hatchery (UFH) in 1986. Measure 703 of the program amended the original authorization for the hatchery and specified evaluation of the Michigan (MI) raceways using oxygen supplementation to reach production goals of 290,000 lb of chinook salmon (Oncorhynchus tshawytscha) and steelhead (O. mykiss). The hatchery was completed in fall 1991. Partial justification for the hatchery was to evaluate new production and supplementation techniques. MI raceways at UFH increase smolt production with a limited water supply. Test results for MI raceways will have systematicmore » application in the Columbia River basin. The UFH is the foundation for rehabilitating chinook salmon and enhancing steelhead in the Umatilla River (CTUIR and ODFW 1990) and is expected to contribute significantly to the Northwest Power Planning Council's goal of doubling salmon production in the Columbia Basin. Hatchery production goals and a comprehensive monitoring and evaluation plan were presented in the Umatilla Hatchery Master Plan (CTUIR and ODFW 1990). The Comprehensive Plan for Monitoring and Evaluation of Umatilla Hatchery (Carmichael 1990) was approved by the Northwest Power Planning Council as a critical adaptive management guide for fisheries rehabilitation in the Umatilla River. Monitoring and evaluation will be used to increase knowledge about uncertainties inherent in the fisheries rehabilitation and will complement the developing systematic monitoring and evaluation program. The monitoring and evaluation goals are: (1) Provide information and recommendations for the culture and release of hatchery fish, harvest regulations, and natural escapement to accomplish long-term natural and hatchery production goals in the Umatilla River basin that are consistent with provisions of the Council's Columbia River Basin Fish and Wildlife Program. (2) Assess the success of achieving the management objectives in the Umatilla River basin that are presented in the Master Plan and the Comprehensive Rehabilitation Plan. A substantial proportion of the production at UFH is reared in MI raceways. This system has not been thoroughly evaluated to determine the effects on Smolt-to-adult survival (SAS). In addition, the rearing strategies proposed for spring chinook salmon require an unusually extensive period of incubation in chilled well water. Extensive background and justification for UFH monitoring and evaluation is presented in Carmichael (1990). In this report, we present findings for the UFH Monitoring and Evaluation Project from 1 November 1998 to 31 October 1999. We designed our program to evaluate fish cultural practices, conduct rearing and survival studies, assess sport fisheries, and provide information for planning and coordination. Additional studies have been designed for fall chinook salmon to evaluate straying and the effects of tagging. We monitored the culture and performance of more than 3.2 million chinook salmon and steelhead produced at UFH in 1997-98 (Appendix Tables A1-8). Individual stock profiles, release, performance, and return data of previously released groups are presented in the following sections.« less

Genetic differences between hatchery and wild steelhead for growth and survival in the hatchery and seaward migration after release (Study sites: Dworshak Hatchery and Clearwater Hatchery; Stocks: Dworshak hatchery and Selway River wild; Year classes: 1994 and 1995): Chapter 2

USGS Publications Warehouse

Rubin, Stephen P.; Reisenbichler, Reginald R.; Hensleigh, Jay E.; Wetzel, Lisa A.; Baker, Bruce M.; Rubin, Stephen P.; Reisenbichler, Reginald R.; Wetzel, Lisa A.; Hayes, Michael C.

2012-01-01

Various studies suggest that sea ranching of anadromous salmonids can result in domestication (increased fitness in the hatchery program) and a loss of fitness for natural production; however, the mechanism has not been characterized adequately. We artificially spawned hatchery and wild steelhead Oncorhynchus mykiss from the Clearwater River, Idaho, reared the resulting genetically marked (at the PEPA allozyme locus) progeny (HxH, HxW from hatchery females and wild males, and WxW) in hatcheries, and tested for differences in survival, growth, early maturation, downstream migration, and adult returns. Rearing treatments were mixed (crosses reared together) and separate (crosses reared separately from each other) at the hatchery of origin for the hatchery population where smolts are produced in one year, and at a nearby hatchery employing lower rations, lower winter temperatures, and two years of rearing to more closely mimic the natural life history (natural smolt age = 2-4 years). The hatchery population had been artificially propagated for six generations at the onset of our study. We found little or no difference in survival in the hatchery but substantially higher rates of growth and subsequent downstream migration for HxH than for WxW fish. Faster growth for HxH fish resulted in greater size at release which contributed to their higher migration rate, but other as yet uncharacterized traits also affected migration since the migration difference between crosses was apparent even within size classes. Growth of WxW fish was slower in the mixed than in the separate treatment indicating that WxW fish were competitively inferior to HxH fish in the hatchery environment. Incidence of precocious males was higher for WxW than for HxH fish in the separate but not in the mixed treatment. Incidence of HxH precocious males was similar between treatments. Apparently, the presence of HxH fish suppressed high incidence of early maturation by WxW males. A direct effect beyond the suppression of WxW growth by HxH fish was involved because the effect persisted within size categories. In-hatchery survival and growth of WxW relative to HxH fish may have been better with two-year rearing than in the standard one-year program (differences were consistent but small and non-significant); however, performance remained substantially worse for progeny of wild fish. Greater downstream migration for HxH than for WxW fish was primarily due to greater residualization for WxW than for HxH fish near the smolt release site rather than to immediate differential mortality. By August the residuals had lost condition compared to their condition in the hatchery the previous March, a month before release, and the residuals produced almost no smolts the following spring. Adult return rate was higher for HxH than for WxW fish for one year-class, consistent with the difference in downstream migration; only three adults (all WxW) returned from the other. Intermediate performance by HxW fish on growth, early maturation, downstream migration, and adult returns corroborated the genetic basis of the stock differences. Natural selection after release from the hatchery favored fish that performed well in the hatchery (grew fast, didn’t mature early, and excelled in other as yet uncharacterized traits) and genetically changed (domesticated) the wild population to resemble the hatchery population.

Genetic assessment of a summer chum salmon metapopulation in recovery

PubMed Central

Small, Maureen P; Johnson, Thom H; Bowman, Cherril; Martinez, Edith

2014-01-01

Programs to rebuild imperiled wild fish populations often include hatchery-born fish derived from wild populations to supplement natural spawner abundance. These programs require monitoring to determine their demographic, biological, and genetic effects. In 1990s in Washington State, the Summer Chum Salmon Conservation Initiative developed a recovery program for the threatened Hood Canal summer chum salmon Evolutionarily Significant Unit (ESU) (the metapopulation) that used in-river spawners (wild fish) for each respective supplementation broodstock in six tributaries. Returning spawners (wild-born and hatchery-born) composed subsequent broodstocks, and tributary-specific supplementation was limited to three generations. We assessed impacts of the programs on neutral genetic diversity in this metapopulation using 16 microsatellite loci and a thirty-year dataset spanning before and after supplementation, roughly eight generations. Following supplementation, differentiation among subpopulations decreased (but not significantly) and isolation by distance patterns remained unchanged. There was no decline in genetic diversity in wild-born fish, but hatchery-born fish sampled in the same spawning areas had significantly lower genetic diversity and unequal family representation. Despite potential for negative effects from supplementation programs, few were detected in wild-born fish. We hypothesize that chum salmon natural history makes them less vulnerable to negative impacts from hatchery supplementation. PMID:24567747

Colville Tribal Fish Hatchery, 2000-2001 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arteburn, John; Christensen, David

Federal hydropower projects as well as private power utility systems have had a devastating impact upon anadromous fish resources that once flourished in the Columbia River and it's tributaries. Several areas were completely blocked to anadromous fish by dams, causing the native people who's number one food resource was salmon to rely entirely upon resident fish to replace lost fisheries resources. The Colville Tribal Fish Hatchery is an artificial production program to partially mitigate for anadromous fish losses in the ''Blocked Area'' above Chief Joseph and Grand Coulee Dams pursuant to Resident Fish Substitution Policy of the Northwest Power Planningmore » Councils Fish and Wildlife Program. The hatchery was accepted into the Council's Fish and Wildlife Program in 1984 as a resident fish substitution measure and the hatchery was completed in 1990. The minimum production quota for this facility is 22,679 kg (50,000 lbs.) of trout. To achieve this quota the Colville Tribal Hatchery was scheduled to produce 174,000 fingerling rainbow trout (5 grams/fish), 330,000 sub-yearling rainbow trout (15 grams/fish), 80,000 legal size rainbow trout (90 grams/fish), 196,000 fingerling brook trout (5 grams/fish), 330,000 subyearling brook trout (15 grams/fish) and 60,000 lahontan cutthroat trout (15 grams/fish) in 2001. All fish produced are released into reservation waters, including boundary waters in an effort to provide a successful subsistence /recreational fishery for Colville Tribal members as well as a successful non-member sport fishery. The majority of the fish distributed from the facility are intended to provide a ''carry-over'' fishery. Fish produced at the facility are intended to be capable of contributing to the natural production component of the reservation fish populations. Contribution to the natural production component will be achieved by producing and releasing fish of sufficient quality and quantity for fish to survive to spawning maturity, to spawn naturally in existing and future available habitat (i.e. natural supplementation), while meeting other program objectives. In addition to the hatchery specific goals detailed above, hatchery personnel will actively participate in the Northwest Power Planning Council program, participate in the Columbia Basin Fish and Wildlife Foundation, Resident Fish Committee, and other associated committees and Ad Hoc groups that may be formed to address resident fish issues in the blocked area above Chief Joseph and Grand Coulee Dams.« less

Hood River Production Program Monitoring and Evaluation (M&E) - Confederated Tribes of Warm Springs : Annual Report For Fiscal Year, October 2007 – September 2008.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gerstenberger, Ryan

2009-07-27

This progress report describes work performed by the Confederated Tribes of Warm Springs (CTWSRO) portion of the Hood River Production Program Monitoring and Evaluation Project (HRPP) during the 2008 fiscal year. A total of 64,736 hatchery winter steelhead, 12,108 hatchery summer steelhead, and 68,426 hatchery spring Chinook salmon smolts were acclimated and released in the Hood River basin during the spring. The HRPP exceeded program goals for a release of and 50,000 winter steelhead but fell short of the steelhead release goals of 30,000 summer steelhead and 75,000 spring Chinook in 2008. Passive Integrated Transponders (PIT) tags were implanted inmore » 6,652 hatchery winter steelhead, and 1,196 hatchery summer steelhead, to compare migratory attributes and survival rates of hatchery fish released into the Hood River. Water temperatures were recorded at six locations within the Hood River subbasin to monitor for compliance with Oregon Department of Environmental Quality water quality standards. A preseason spring Chinook salmon adult run forecast was generated, which predicted an abundant return adequate to meet escapement goal and brood stock needs. As a result the tribal and sport fisheries were opened. A tribal creel was conducted from May 22 to July 18 during which an estimated 172 spring Chinook were harvested. One hundred sixteen Spring Chinook salmon redds were observed and 72 carcasses were inspected on 19.4 miles of spawning grounds throughout the Hood River Basin during 2008. Annual salvage operations were completed in two irrigation canals resulting in the liberation of 1,641 fish back to the Hood River.« less

Genetic contribution of hatchery fish to walleye stocks in Saginaw Bay, Michigan

USGS Publications Warehouse

Todd, Thomas N.; Haas, Robert C.; Schramm, Harold L.; Piper, Robert G.

1995-01-01

Stocks of walleye (Stizostedion vitreum) were severely depressed in Saginaw Bay in the 1970s. In 1979, the Michigan Department of Natural Resources began intensive stocking of walleye fingerlings to bolster fish populations. Subsequent to stocking, the walleye fishery has recovered. The study objective was to determine if recovery was due to the stocking program or natural reproduction. Inherent genetic differences between hatchery fish and endemic walleyes were used to determine the effect and contribution of hatchery fish to Saginaw Bay.

Modeling the Potential Impacts of Climate Change on Pacific Salmon Culture Programs: An Example at Winthrop National Fish Hatchery

NASA Astrophysics Data System (ADS)

Hanson, Kyle C.; Peterson, Douglas P.

2014-09-01

Hatcheries have long been used in an attempt to mitigate for declines in wild stocks of Pacific salmon ( Oncorhynchus spp.), though the conservation benefit of hatcheries is a topic of ongoing debate. Irrespective of conservation benefits, a fundamental question is whether hatcheries will be able to function as they have in the past given anticipated future climate conditions. To begin to answer this question, we developed a deterministic modeling framework to evaluate how climate change may affect hatcheries that rear Pacific salmon. The framework considers the physiological tolerances for each species, incorporates a temperature-driven growth model, and uses two metrics commonly monitored by hatchery managers to determine the impacts of changes in water temperature and availability on hatchery rearing conditions. As a case study, we applied the model to the US Fish and Wildlife Service's Winthrop National Fish Hatchery. We projected that hatchery environmental conditions remained within the general physiological tolerances for Chinook salmon in the 2040s (assuming A1B greenhouse gas emissions scenario), but that warmer water temperatures in summer accelerated juvenile salmon growth. Increased growth during summer coincided with periods when water availability should also be lower, thus increasing the likelihood of physiological stress in juvenile salmon. The identification of these climate sensitivities led to a consideration of potential mitigation strategies such as chilling water, altering rations, or modifying rearing cycles. The framework can be refined with new information, but in its present form, it provides a consistent, repeatable method to assess the vulnerability of hatcheries to predicted climate change.

Snake River Sockeye Salmon Captive Broodstock Program; Research Element, 2003 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Willard, Catherine; Plaster, Kurtis; Castillo, Jason

2005-01-01

On November 20, 1991, the National Oceanic Atmospheric Administration listed Snake River sockeye salmon Oncorhynchus nerka as endangered under the Endangered Species Act of 1973. In 1991, the Shoshone-Bannock Tribes (SBT) and Idaho Department of Fish and Game (IDFG) initiated the Snake River Sockeye Salmon Captive Broodstock Program to conserve and rebuild populations in Idaho. Restoration efforts are focused on Redfish, Pettit, and Alturas lakes within the Sawtooth Valley. The first release of hatchery-produced adults occurred in 1993. The first release of juvenile sockeye salmon from the captive broodstock program occurred in 1994. In 1999, the first anadromous adult returnsmore » from the captive broodstock program were recorded when six jacks and one jill were captured at the IDFG Sawtooth Fish Hatchery. In 2003, progeny from the captive broodstock program were released using three strategies: eyed-eggs were planted in Pettit and Alturas lakes in November and December, age-0 presmolts were released to Alturas, Pettit, and Redfish lakes in October, and hatchery-produced adult sockeye salmon were released to Redfish Lake for volitional spawning in September. Oncorhynchus nerka population monitoring was conducted on Redfish, Alturas, and Pettit lakes using a midwater trawl in September 2003. Age-0 through age-4 O. nerka were captured in Redfish Lake, and population abundance was estimated at 81,727 fish. Age-0 through age-3 O. nerka were captured in Alturas Lake, and population abundance was estimated at 46,234 fish. Age-0 through age-3 O. nerka were captured in Pettit Lake, and population abundance was estimated at 11,961 fish. Angler surveys were conducted from May 25 through August 7, 2003 on Redfish Lake to estimate kokanee harvest. On Redfish Lake, we interviewed 179 anglers and estimated that 424 kokanee were harvested. The calculated kokanee catch rate was 0.09 fish/hour. The juvenile out-migrant trap on Redfish Lake Creek was operated from April 15 to May 29, 2003. We estimated that 4,637 wild/natural and 12,226 hatchery-produced sockeye salmon smolts out-migrated from Redfish Lake in 2003. The hatchery-produced component included an estimated 5,352 out-migrants produced from a summer direct-release made to Redfish Lake in 2002 and 6,874 out-migrants produced from a fall direct-release made in 2002. The juvenile out-migrant traps on Alturas Lake Creek and Pettit Lake Creek were operated by the SBT from April 23 to June 5, 2003 and April 25 to June 4, 2003, respectively. The SBT enumerated 28 wild/natural and 13,329 hatchery-produced sockeye salmon smolts that outmigrated from Pettit Lake and estimated 286 wild/natural and 553 hatchery-produced sockeye salmon smolts out-migrated from Alturas Lake in 2003. The hatchery-produced component of sockeye salmon out-migrants originated from presmolt releases made directly to Pettit and Alturas lakes in 2002. Median travel times for passive integrated transponder (PIT) tagged smolts from the Redfish Lake Creek trap site to Lower Granite Dam were estimated for wild/natural smolts and hatchery-produced smolts. Median travel times for smolts originating from the Redfish Lake Creek trap were 10.6 d for wild/natural smolts, 6.2 d for summer direct-released smolts, and 7.1 d for fall direct-released smolts. Median travel times for PIT-tagged smolts from the Pettit Lake Creek trap site to Lower Granite Dam were estimated for hatchery-produced smolts. Median travel times for smolts originating from the Pettit Lake Creek trap were 14.1 d for fall direct released smolts and 13.6 d for fall direct released smolts. Cumulative unique PIT tag interrogations from Sawtooth Valley juvenile out-migrant traps to mainstem Snake and Columbia river dams were utilized to estimate detection rates for out-migrating sockeye salmon smolts. Detection rate comparisons were made between smolts originating from Redfish, Alturas, and Pettit lakes and the various release strategies. Pettit Lake fall direct released smolts recorded the highest detection rate of 37.14%. In 2003, 312 hatchery-produced adult sockeye salmon were released to Redfish Lake for natural spawning. We observed 42 areas of excavation in the lake from spawning events. Suspected redds were approximately 3 m x 3 m in size and were constructed by multiple pairs of adults. We monitored bull trout spawning in Fishhook Creek, a tributary to Redfish Lake, and in Alpine Creek, a tributary to Alturas Lake. This represented the sixth consecutive year that the index reaches have been surveyed on these two streams. Adult counts (40 adults) and redd counts (17 redds) in Fishhook Creek were similar to counts conducted since monitoring began in 1998. Bull trout numbers (27 adults) and the number of redds observed (14 redds) have gradually increased in Alpine Creek compared to counts from initial monitoring.« less

Comparing the Reproductive Success of Yakima River Hatchery-and Wild-Origin Spring Chinook; Yakima/Klickitat Fisheries Project Monitoring and Evaluation, 2000-2001 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schroder, S.L.; Knudsen, C.M.; Rau, J.A.

In the Yakima Spring Chinook supplementation program, wild fish are brought into the Cle Elum Hatchery, artificially crossed, reared, transferred to acclimation sites, and released into the upper Yakima River as smolts. When these fish mature and return to the Yakima River most of them will be allowed to spawn naturally; a few, however, will be brought back to the hatchery and used for research purposes. In order for this supplementation approach to be successful, hatchery-origin fish must be able to spawn and produce offspring under natural conditions. Recent investigations on salmonid fishes have indicated that exposure to hatchery environmentsmore » during juvenile life may cause significant behavioral, physiological, and morphological changes in adult fish. These changes appear to reduce the reproductive competence of hatchery fish. In general, males are more affected than females; species with prolonged freshwater rearing periods are more strongly impacted than those with shorter rearing periods; and stocks that have been exposed to artificial culture for multiple generations are more impaired than those with a relatively short exposure history to hatchery conditions.« less

Snake River Sockeye Salmon Captive Broodstock Program; Research Element, 2002 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Willard, Catherine; Hebdon, J. Lance; Castillo, Jason

2004-06-01

On November 20, 1991, the National Oceanic Atmospheric Administration listed Snake River sockeye salmon Oncorhynchus nerka as endangered under the Endangered Species Act of 1973. In 1991, the Shoshone-Bannock Tribes and Idaho Department of Fish and Game initiated the Snake River Sockeye Salmon Sawtooth Valley Project to conserve and rebuild populations in Idaho. Restoration efforts are focusing on Redfish, Pettit, and Alturas lakes within the Sawtooth Valley. The first release of hatchery-produced juvenile sockeye salmon from the captive broodstock program occurred in 1994. The first anadromous adult returns from the captive broodstock program were recorded in 1999 when six jacksmore » and one jill were captured at IDFG's Sawtooth Fish Hatchery. In 2002, progeny from the captive broodstock program were released using four strategies: age-0 presmolts were released to Alturas, Pettit, and Redfish lakes in August and to Pettit and Redfish lakes in October, age-1 smolts were released to Redfish Lake Creek in May, eyed-eggs were planted in Pettit Lake in December, and hatchery-produced and anadromous adult sockeye salmon were released to Redfish Lake for volitional spawning in September. Oncorhynchus nerka population monitoring was conducted on Redfish, Alturas, and Pettit lakes using a midwater trawl in September 2002. Age-0, age-1, and age-2 O. nerka were captured in Redfish Lake, and population abundance was estimated at 50,204 fish. Age-0, age-1, age-2, and age-3 kokanee were captured in Alturas Lake, and population abundance was estimated at 24,374 fish. Age-2 and age-3 O. nerka were captured in Pettit Lake, and population abundance was estimated at 18,328 fish. The ultimate goal of the Idaho Department of Fish and Game (IDFG) captive broodstock development and evaluation efforts is to recover sockeye salmon runs in Idaho waters. Recovery is defined as reestablishing sockeye salmon runs and providing for utilization of sockeye salmon and kokanee resources by anglers. The immediate project goal is to maintain this unique sockeye salmon population through captive broodstock technology and avoid species extinction. The project objectives are: (1) Develop captive broodstocks from Redfish Lake anadromous sockeye salmon. (2) Determine the contribution hatchery-produced sockeye salmon make toward avoiding population extinction and increasing population abundance. (3) Describe O. nerka population characteristics for Sawtooth Valley lakes in relation to carrying capacity and broodstock program supplementation efforts. (4) Refine our ability to discern the origin of wild and broodstock sockeye salmon to provide maximum effectiveness in their utilization within the broodstock program. (5) Transfer technology through participation in the technical oversight committee process, providing written activity reports and participation in essential program management and planning activities.« less

Managed Metapopulations: Do Salmon Hatchery ‘Sources’ Lead to In-River ‘Sinks’ in Conservation?

PubMed Central

Johnson, Rachel C.; Weber, Peter K.; Wikert, John D.; Workman, Michelle L.; MacFarlane, R. Bruce; Grove, Marty J.; Schmitt, Axel K.

2012-01-01

Maintaining viable populations of salmon in the wild is a primary goal for many conservation and recovery programs. The frequency and extent of connectivity among natal sources defines the demographic and genetic boundaries of a population. Yet, the role that immigration of hatchery-produced adults may play in altering population dynamics and fitness of natural populations remains largely unquantified. Quantifying, whether natural populations are self-sustaining, functions as sources (population growth rate in the absence of dispersal, λ>1), or as sinks (λ<1) can be obscured by an inability to identify immigrants. In this study we use a new isotopic approach to demonstrate that a natural spawning population of Chinook salmon, (Oncorhynchus tshawytscha) considered relatively healthy, represents a sink population when the contribution of hatchery immigrants is taken into consideration. We retrieved sulfur isotopes (34S/32S, referred to as δ34S) in adult Chinook salmon otoliths (ear bones) that were deposited during their early life history as juveniles to determine whether individuals were produced in hatcheries or naturally in rivers. Our results show that only 10.3% (CI = 5.5 to 18.1%) of adults spawning in the river had otolith δ34S values less than 8.5‰, which is characteristic of naturally produced salmon. When considering the total return to the watershed (total fish in river and hatchery), we estimate that 90.7 to 99.3% (CI) of returning adults were produced in a hatchery (best estimate = 95.9%). When population growth rate of the natural population was modeled to account for the contribution of previously unidentified hatchery immigrants, we found that hatchery-produced fish caused the false appearance of positive population growth. These findings highlight the potential dangers in ignoring source-sink dynamics in recovering natural populations, and question the extent to which declines in natural salmon populations are undetected by monitoring programs. PMID:22347362

Managed Metapopulations: Do Salmon Hatchery ‘Sources’ Lead to In-River ‘Sinks’ in Conservation?

DOE PAGES

Johnson, Rachel C.; Weber, Peter K.; Wikert, John D.; ...

2012-02-08

Maintaining viable populations of salmon in the wild is a primary goal for many conservation and recovery programs. The frequency and extent of connectivity among natal sources defines the demographic and genetic boundaries of a population. Yet, the role that immigration of hatchery-produced adults may play in altering population dynamics and fitness of natural populations remains largely unquantified. Quantifying, whether natural populations are self-sustaining, functions as sources (population growth rate in the absence of dispersal, λ>1), or as sinks (λ<1) can be obscured by an inability to identify immigrants. In this study we use a new isotopic approach to demonstratemore » that a natural spawning population of Chinook salmon, (Oncorhynchus tshawytscha) considered relatively healthy, represents a sink population when the contribution of hatchery immigrants is taken into consideration. We retrieved sulfur isotopes ( 34S/ 32S, referred to as δ 34S) in adult Chinook salmon otoliths (ear bones) that were deposited during their early life history as juveniles to determine whether individuals were produced in hatcheries or naturally in rivers. Our results show that only 10.3% (CI=5.5 to 18.1%) of adults spawning in the river had otolith δ 34S values less than 8.5‰, which is characteristic of naturally produced salmon. When considering the total return to the watershed (total fish in river and hatchery), we estimate that 90.7 to 99.3% (CI) of returning adults were produced in a hatchery (best estimate=95.9%). When population growth rate of the natural population was modeled to account for the contribution of previously unidentified hatchery immigrants, we found that hatchery-produced fish caused the false appearance of positive population growth. In conclusion, these findings highlight the potential dangers in ignoring source-sink dynamics in recovering natural populations, and question the extent to which declines in natural salmon populations are undetected by monitoring programs.« less

Elemental signatures in otoliths of hatchery rainbow trout (Oncorhynchus mykiss): Distinctiveness and utility fo detecting origins and movement

USGS Publications Warehouse

Gibson-Reinemer, D. K.; Johnson, B.M.; Martinez, P.J.; Winkelman, D.L.; Koenig, A.E.; Woodhead, J.D.

2009-01-01

Otolith chemistry in freshwater has considerable potential to reveal patterns of origin and movement, which would benefit traditional fisheries management and provide a valuable tool to curb the spread of invasive and illicitly stocked species. We evaluated the relationship between otolith and water chemistry for five markers (Ba/Ca, Mn/Ca, Sr/ Ca, Zn/Ca, and 87Sr/86Sr) in rainbow trout (Oncorhynchus mykiss) using the existing hatchery system in Colorado and Wyoming, USA, to provide controlled, seminatural conditions. Otolith Ba/Ca, Sr/Ca, and 87Sr/86Sr reflected ambient levels, whereas Mn/Ca and Zn/Ca did not. Using only the markers correlated with water chemistry, we classified fish to their hatchery of origin with up to 96% accuracy when element and isotope data were used together. Large changes in 87Sr/Sr were evident in otolith transects, although subtler changes in Sr/Ca were also detectable. Our results suggest the relatively few otolith markers that reflect ambient chemistry can discriminate among locations and track movements well enough to provide valuable insight in a variety of applied contexts.

Grande Ronde Endemic Spring Chinook Salmon Supplementation Project; Lostine River Operations and Maintenance 2003 Smolt Acclimation and Adult Return Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zollman, Richard L.; Eschler, Russell; Sealey, Shawn

2009-03-31

The Nez Perce Tribe (NPT), through funding provided by the Bonneville Power Administration (BPA), has implemented a Chinook salmon supplementation program (250,000 smolts) on the Lostine River, a tributary to the Grande Ronde River of Oregon. The Grande Ronde Endemic Spring Chinook Salmon Supplementation project, which involves supplementation of the Upper Grande Ronde River and Catherine Creek in addition to the Lostine River, was established to prevent extirpation and increase the number of threatened Snake River spring/summer Chinook salmon (Oncorhynchus tshawytscha) returning to the Grande Ronde River. This report covers the seventh season (1997-2003) of adult Chinook salmon broodstock collectionmore » in the Lostine River and the fifth season (1999-2003) of acclimating the resultant progeny. Production of Lostine River spring Chinook salmon smolts currently occurs at Lookingglass Fish Hatchery (LGH). The Lostine River supplementation program utilizes two strategies to obtain egg source for production of smolts for supplementation: captive broodstock and conventional broodstock. The captive broodstock strategy involves (1) capture of natural juvenile spring Chinook salmon smolts from the Lostine River, (2) rearing those to adult and spawning them, and (3) rearing the resultant progeny for eventual acclimation and release back into the Lostine River. The conventional broodstock strategy involves (1) capture of natural and hatchery origin adults returning to the Lostine River, (2) holding those adults and spawning them, and (3) rearing the resultant progeny for acclimation and release back into the Lostine River. This report focuses on (1) the trapping and collection of adult spring Chinook salmon that return to the Lostine River, which provides the broodstock source for the conventional strategy and (2) the acclimation and release of juvenile spring Chinook salmon produced from the captive broodstock and conventional broodstock strategies. In 2003, acclimation of Lostine River spring Chinook salmon smolts occurred from March 3, 2003 through to April 14, 2003 and a total of 242,776 smolts were acclimated and released. These smolts were produced from the brood year (BY) 2001 egg source and included captive broodstock (141,860) and conventional broodstock (100,916) origin smolts that were all progeny of Lostine River spring Chinook salmon. Operation of the Lostine River adult monitoring and collection facility in 2003 began April 30th, the first Chinook was captured on May 16, 2003 and the last Chinook was captured on September 21, 2003. The weir and trap were removed on October 1, 2003. A total of 464 adult Chinook, including jacks, were captured during the season. The composition of the run included 239 natural origin fish and 225 hatchery supplementation fish. There were no identified 'stray' hatchery fish from other programs trapped. Of the fish captured, 45 natural and 4 hatchery supplementation adults were retained for broodstock and transported to LGH for holding and spawning, 366 adult Chinook were passed or transported above the weir to spawn naturally, and 49 hatchery origin adult jack Chinook were transported and outplanted in the Wallowa River and Bear Creek to spawn in underseeded habitat. Of the 49 adults retained for broodstock at Lookingglass Hatchery, 21 natural females and no hatchery origin females were represented in spawning. These females produced a total of 106,609 eggs at fertilization. Eye-up was 95.50% which yielded a total of 101,811 conventional program eyed eggs. The fecundity averaged 5,077 eggs per female. These eggs were incubated and at Lookingglass Hatchery until eyed stage. At eye they were transferred to Oxbow Hatchery where they were reared to the fingerling state at which time they were transported back to LGH until they were smolts in the spring of 2005. Captive brood program eggs/fish will be added to the conventional program eggs to make up the entire juvenile release for the Lostine River program in 2005.« less

Lake Roosevelt Fisheries Monitoring Program; 1988-1989 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Peone, Tim L.; Scholz, Allan T.; Griffith, James R.

1990-10-01

In the Northwest Power Planning Council's 1987 Columbia River Basin Fish and Wildlife Program (NPPC 1987), the Council directed the Bonneville Power Administration (BPA) to construct two kokanee salmon (Oncorhynchus nerka) hatcheries as partial mitigation for the loss of anadromous salmon and steelhead incurred by construction of Grand Coulee Dam [Section 903 (g)(l)(C)]. The hatcheries will produce kokanee salmon for outplanting into Lake Roosevelt as well as rainbow trout (Oncorhynchus mykiss) for the Lake Roosevelt net-pen program. In section 903 (g)(l)(E), the Council also directed BPA to fund a monitoring program to evaluate the effectiveness of the kokanee hatcheries. Themore » monitoring program included the following components: (1) a year-round, reservoir-wide, creel survey to determine angler use, catch rates and composition, and growth and condition of fish; (2) assessment of kokanee, rainbow, and walleye (Stizostedion vitreum) feeding habits and densities of their preferred prey, and; (3) a mark and recapture study designed to assess the effectiveness of different locations where hatchery-raised kokanee and net pen reared rainbow trout are released. The above measures were adopted by the Council based on a management plan, developed by the Upper Columbia United Tribes Fisheries Center, Spokane Indian Tribe, Colville Confederated Tribes, Washington Department of Wildlife, and National Park Service, that examined the feasibility of restoring and enhancing Lake Roosevelt fisheries (Scholz et al. 1986). In July 1988, BPA entered into a contract with the Spokane Indian Tribe to initiate the monitoring program. The projected duration of the monitoring program is through 1995. This report contains the results of the monitoring program from August 1988 to December 1989.« less

Grande Ronde Endemic Spring Chinook Salmon Supplementation Project; Lostine River Operations and Maintenance 2004 Smolt Acclimation and Adult Return Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zollman, Richard L.; Eschler, Russell; Sealey, Shawn

2009-03-31

The Nez Perce Tribe (NPT), through funding provided by the Bonneville Power Administration (BPA), has implemented a Chinook salmon supplementation program (250,000 smolts) on the Lostine River, a tributary to the Grande Ronde River of Oregon. The Grande Ronde Endemic Spring Chinook Salmon Supplementation project, which involves supplementation of the Upper Grande Ronde River and Catherine Creek in addition to the Lostine River, was established to prevent extirpation and increase the number of threatened Snake River spring/summer Chinook salmon (Oncorhynchus tshawytscha) returning to the Grande Ronde River. This report covers the eighth season (1997-2004) of adult Chinook salmon broodstock collectionmore » in the Lostine River and the sixth season (1999-2004) of acclimation of resulting Lostine River progeny. Production of Lostine River spring Chinook salmon smolts currently occurs at Lookingglass Fish Hatchery (LGH). The Lostine River supplementation program utilizes two strategies to obtain egg source for production of smolts for supplementation: captive broodstock and conventional broodstock. The captive broodstock strategy involves (1) capture of natural juvenile spring Chinook salmon smolts from the Lostine River, (2) rearing those to adult and spawning them, and (3) rearing the resultant progeny for eventual acclimation and release back into the Lostine River. The conventional broodstock strategy involves (1) capture of natural and hatchery origin adults returning to the Lostine River, (2) holding those adults and spawning them, and (3) rearing the resultant progency for acclimation and release back into the Lostine River. This report focuses on (1) the trapping and collection of adult spring Chinook salmon that return to the Lostine River, which provides the broodstock source for the conventional strategy and (2) the acclimation and release of juvenile spring Chinook salmon produced from the captive broodstock and conventional broodstock strategies. In 2004, acclimation of Lostine River spring Chinook salmon smolts occurred from March 1, 2004 through to April 14, 2004 and a total of 250,249 smolts were acclimated and released. These smolts were produced from the brood year (BY) 2002 egg source and included captive brood (133,781) and conventional (116,468) origin smolts that were all progeny of Lostine River spring Chinook salmon. Operation of the Lostine River adult monitoring and collection facility in 2004 began May 10, the first Chinook was captured on May 19, 2004 and the last Chinook was captured on September 16, 2004. The weir and trap were removed on October 1, 2004. A total of 1,091 adult Chinook, including jacks, were captured during the season. The composition of the run included 299 natural origin fish and 792 hatchery supplementation fish. There were no identified 'stray' hatchery fish from other programs trapped. Of the fish captured, 46 natural and 69 hatchery supplementation adults were retained for broodstock and transported to Lookingglass Hatchery for holding and spawning, 537 adult Chinook were passed or transported above the weir to spawn naturally, and 447 hatchery origin adult Chinook were transported and outplanted in the Wallowa River and Bear Creek to spawn in underseeded habitat. Of the 107 adults retained (eight additional hatchery females were collected and then later returned to the Lostine River to spawn naturally) for broodstock at Lookingglass Hatchery, 22 natural females and 30 supplementation females were represented in spawning. These females produced a total of 221,889 eggs at fertilization. Eye-up was 94.9% which yielded a total of 210,661 conventional program eyed eggs. The fecundity averaged 4,267 eggs per female. These eggs were incubated and at Lookingglass Hatchery until eyed stage and then transferred to Oxbow Hatchery where they will be reared to the fingerling stage. They will then be transported back to LGH and reared to the smolt stage and then transported to the Lostine acclimation facility for release in the spring of 2006. Captive brood program eggs/fish will be added to the conventional program eggs to make up the entire juvenile release for the Lostine River program in 2006.« less

Density-dependence at sea for coho salmon (Oncorhynchus kisutch)

USGS Publications Warehouse

Emlen, J.M.; Reisenbichler, R.R.; McGie, A.M.; Nickelson, T.E.

1990-01-01

The success of expanded salmon hatchery programs will depend strongly on the degree of density-induced diminishing returns per smolt released. Several authors have addressed the question of density-dependent mortality at sea in coho salmon (Oncorhynchus kisutch), but have come to conflicting conclusions. We believe there are compelling reasons to reinvestigate the data, and have done so for public hatchery fish, using a variety of approaches. The results provide evidence that survival of these public hatchery fish is negatively affected, directly by the number of public hatchery smolts and indirectly by the number of private hatchery smolts. These results are weak, statistically, and should be considered primarily as a caution to those who, on the basis of other published work, believe that density-dependence does not exist. The results reported here also re-emphasize the often overlooked point that inferences drawn from data are strongly biased by investigators' views of how the systems of interest work and by the statistical assumptions they make preparatory to the analysis of those data.

Spring Outmigration of Wild and Hatchery Chinook Salmonid Steelhead Trout Smolts from the Imnaha River, Oregon; 1995 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Blenden, Michael L.; Kucera, Paul A.; Osborne, Randall S.

1996-04-01

For the second consecutive year, the Nez Perce Tribe, in conjunction with the Fish Passage Center, participated in the smolt monitoring program in the Imnaha River. A rotary screw trap was used to collect emigrating wild and hatchery chinook salmon (Oncorhynchus tshawytscha) and steelhead trout (Oncorhynchus mykiss) smolts from February 6 to June 20, 1995. We PIT tagged and released 421 wild chinook salmon smolts, 747 hatchery chinook salmon smolts (445 HxW and 302 HxH), 227 wild steelhead trout smolts and 1,296 hatchery steelhead trout smolts. Cumulative interrogation rates at mainstem Snake and Columbia River dams were 78.4% for wildmore » chinook salmon, 58.9% for hatchery chinook salmon (HxW), 56.6% for hatchery chinook salmon (HxH), 76.2% for wild steelhead trout, and 69.2% for hatchery steelhead trout. Peak outmigration of NPT tagged wild Imnaha River chinook salmon smolts occurred from early to mid-May at Lower Granite, Little Goose, and Lower Monumental Dams. Median and 90% passage dates for wild chinook salmon smolts at Lower Granite Dam were May 1 and May 11, respectively. Continuous spill at Lower Granite Dam was initiated on May 3 and lasted for 51 days. The 90% passage date of wild chinook salmon smolts at Lower Granite Dam (May 11) preceded peak Snake River and Lower Granite (June 6) flows by 26 days. Although hatchery chinook salmon exhibited a shorter outmigration period through the Snake River than their wild counterparts, peak arrival for both groups occurred at approximately the same time. Median and 90% passage dates at Lower Granite Dam for other PIT tagged groups were: hatchery chinook salmon (NPT-HxW) - May 2 and May 13; hatchery chinook salmon (FPC-HxH) - May 8 and May 15; wild steelhead trout - May 2 and May 9; and hatchery steelhead trout (NPT and FPC) - May 31 and June 16. Hatchery steelhead trout displayed small peaks in arrival timing at Lower Granite and Little Goose Dams in mid-May to mid-June.« less

75 FR 6058 - Federal Sport Fish Restoration; California Department of Fish and Game Fish Hatchery and Stocking...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-02-05

...] Federal Sport Fish Restoration; California Department of Fish and Game Fish Hatchery and Stocking Program...) announces the availability of the final EIR/EIS for the California Department of Fish and Game's (CDFG) Fish.... This legislation called for the newly formed California State Fish and Game Commission to establish...

Management of bacterial kidney disease in Chinook Salmon hatcheries based on broodstock testing by enzyme-linked immunosorbent assay: A multiyear study

USGS Publications Warehouse

Munson, A. Douglas; Elliott, Diane G.; Johnson, Keith

2010-01-01

From the mid-1980s through the early 1990s, outbreaks of bacterial kidney disease (BKD) caused by Renibacterium salmoninarum continued in Chinook salmon Oncorhynchus tshawytscha in Idaho Department of Fish and Game (IDFG) hatcheries despite the use of three control methods: (1) injection of returning adult fish with erythromycin to reduce prespawning BKD mortality and limit vertical transmission of R. salmoninarum, (2) topical disinfection of green eggs with iodophor, and (3) prophylactic treatments of juvenile fish with erythromycin-medicated feed. In addition, programs to manage BKD through measurement of R. salmoninarum antigen levels in kidney tissues from spawning female Chinook salmon by an enzyme-linked immunosorbent assay (ELISA) were tested over 13–15 brood years at three IDFG hatcheries. The ELISA results were used for either (1) segregated rearing of progeny from females with high ELISA optical density (OD) values (usually ≥0.25), which are indicative of high R. salmoninarum antigen levels, or (2) culling of eggs from females with high ELISA OD values. The ELISA-based culling program had the most profound positive effects on the study populations. Mortality of juvenile fish during rearing was significantly lower at each hatchery for brood years derived from culling compared with brood years for which culling was not practiced. The prevalence of R. salmoninarum in juvenile fish, as evidenced by detection of the bacterium in kidney smears by the direct fluorescent antibody test, also decreased significantly at each hatchery. In addition, the proportions of returning adult females with kidney ELISA OD values of 0.25 or more decreased 56–85% for fish reared in brood years during which culling was practiced, whereas the proportions of ELISA-negative adults increased 55–58%. This management strategy may allow IDFG Chinook salmon hatcheries to reduce or eliminate prophylactic erythromycin-medicated feed treatments. We recommend using ELISA-based management of BKD in Chinook salmon hatcheries where it is a concern.

Stock enhancement or sea ranching? Insights from monitoring the genetic diversity, relatedness and effective population size in a seeded great scallop population (Pecten maximus).

PubMed

Morvezen, R; Boudry, P; Laroche, J; Charrier, G

2016-09-01

The mass release of hatchery-propagated stocks raises numerous questions concerning its efficiency in terms of local recruitment and effect on the genetic diversity of wild populations. A seeding program, consisting of mass release of hatchery-produced juveniles in the local naturally occurring population of great scallops (Pecten maximus L.), was initiated in the early 1980s in the Bay of Brest (France). The present study aims at evaluating whether this seeding program leads to actual population enhancement, with detectable effects on genetic diversity and effective population size, or consists of sea ranching with limited genetic consequences on the wild stock. To address this question, microsatellite-based genetic monitoring of three hatchery-born and naturally recruited populations was conducted over a 5-year period. Results showed a limited reduction in allelic richness but a strong alteration of allelic frequencies in hatchery populations, while genetic diversity appeared very stable over time in the wild populations. A temporal increase in relatedness was observed in both cultured stock and wild populations. Effective population size (Ne) estimates were low and variable in the wild population. Moreover, the application of the Ryman-Laikre model suggested a high contribution of hatchery-born scallops to the reproductive output of the wild population. Overall, the data suggest that the main objective of the seeding program, which is stock enhancement, is fulfilled. Moreover, gene flow from surrounding populations and/or the reproductive input of undetected sub-populations within the bay may buffer the Ryman-Laikre effect and ensure the retention of the local genetic variability.

Annual Coded Wire Tag Program; Missing Production Groups, 1996 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pastor, Stephen M.

1997-01-01

In 1989 the Bonneville Power Administration (BPA) began funding the evaluation of production groups of juvenile anadromous fish not being coded-wire tagged for other programs. These groups were the ''Missing Production Groups''. Production fish released by the U.S. Fish and Wildlife Service (USFWS) without representative coded-wire tags during the 1980's are indicated as blank spaces on the survival graphs in this report. The objectives of the ''Missing Production Groups'' program are: (1) to estimate the total survival of each production group, (2) to estimate the contribution of each production group to various fisheries, and (3) to prepare an annual reportmore » for all USFWS hatcheries in the Columbia River basin. Coded-wire tag recovery information will be used to evaluate the relative success of individual brood stocks. This information can also be used by salmon harvest managers to develop plans to allow the harvest of excess hatchery fish while protecting threatened, endangered, or other stocks of concern. In order to meet these objectives, a minimum of one marked group of fish is necessary for each production release. The level of marking varies according to location, species, and age at release. In general, 50,000 fish are marked with a coded-wire tag (CWT) to represent each production release group at hatcheries below John Day Dam. More than 100,000 fish per group are usually marked at hatcheries above John Day Dam. All fish release information, including marked/unmarked ratios, is reported to the Pacific States Marine Fisheries Commission (PSMFC). Fish recovered in the various fisheries or at the hatcheries are sampled to recover coded-wire tags. This recovery information is also reported to PSMFC.« less

Umatilla Hatchery Monitoring and Evaluation, 1999-2002 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chess, Dale W.; Cameron, William A.; Stonecypher, Jr., R. Wes

2003-12-01

REPORT A: UMATILLA HATCHERY MONITORING AND EVALUATION--This report summarizes monitoring and evaluation studies of salmonids reared at Umatilla Fish Hatchery (UFH) for 1 November, 1999 to 31 October, 2002. Studies at UFH are designed to evaluate rearing of chinook salmon and steelhead in ''Michigan raceways''. Characteristics of Michigan raceways include high fish densities, rapid water turnover, oxygen supplementation, reuse of water, and baffles designed to reduce cleaning. Fish health at UFH and other facilities associated with the Umatilla program are intensively monitored and evaluated along with the overall research project. Further, under the Integrated Hatchery Operations Team guidelines, specific requirementsmore » for fish health monitoring at UFH are mandatory. An experiment designed to evaluate rearing subyearling fall chinook salmon in Michigan and Oregon raceways has been completed. An evaluation of survival of subyearling fall chinook salmon reared at three densities will be completed with final returns in 2005. Two new evaluations were started during this reporting period. The first is an evaluation of spring chinook survival of groups transferred to Imeques acclimation facility in the fall, overwinter-acclimated and released with the standard acclimated production groups in March. The second is an evaluation of subyearling fall chinook survival and straying of a direct-stream released group in the lower Umatilla River and the standard group acclimated at Thornhollow acclimation facility in the upper Umatilla River. An important aspect of the project is evaluation of the spring chinook and summer steelhead fisheries in the upper and lower Umatilla River. REPORT B: Fish Health Monitoring and Evaluation, 2000 Fiscal Year--The results presented in this report are from the ninth year of Fish Health Monitoring and Evaluation in the Umatilla Hatchery program. Broodstock monitoring for hatchery production was conducted on adult returns to the Umatilla River at Three Mile Dam and South Fork Walla Walla adult facilities for salmon; steelhead adults were monitored at Minthorn adult facility. A new addition to this year's report is the effort to bring together an overview of fish health monitoring results including historical and year to date pathogen information. This information is in table form (Appendix Tables A-28, A-29 and A-30). A summary of juvenile disease outbreaks at Umatilla Hatchery is also included (Appendix Table A-31). REPORT C: Fish Health Monitoring and Evaluation, 2001 Fiscal Year--Results from the 2001 annual report cover the 10th year of Fish Health Monitoring in the Umatilla Hatchery program. Efforts were again made to provide up to date fish health and juvenile disease outbreak loss summary tables from the beginning of the Umatilla Hatchery program (Appendix Tables A-27, A-28, A-29 and A-30). Outmigrant Fish Health Monitoring results were included in this report since this was part of the fish health work statement for this report period. The discussion section for the 2001 and 2002 annual reports are combined in the 2002 report due to time constraints and consolidation efforts to complete this report by the end of May 2003.« less

An elegant application of appropriate technology: the Sheep Creek Hatchery

NASA Astrophysics Data System (ADS)

Carter, Lewis F.; Macaulay, Ladd; Coffey, Catherine M.

1986-01-01

Alaska's program for rebuilding salmon stock is called fishery enhancement. Hatchery technology can produce dramatic increases in numbers of fish homing to selected streams. The Sheep Creek Hatchery is unusually efficient— it increases a fish run by a factor of 3000 and produces salmon at 9 11c/kg by minimizing mechanical energy inputs and human labor. The design harnesses the force of gravity and capitalizes on instinctual behavior of the fish. Since migratory fish collect protein from ocean “pasturage,” the technology increases the share of this resource collected and concentrated for harvest in a specific country or region. While small seaside hatcheries can solve biological problems of depleted fish stocks, economic and political considerations may preclude efficient utilization of the protein produced. Further, the potential for one state or country to concentrate fish near its shores poses new dilemmas for international regulation of harvests.

Angler harvest, hatchery return, and tributary stray rates of recycled adult summer steelhead Oncorhynchus mykiss in the Cowlitz River, Washington

USGS Publications Warehouse

Kock, Tobias J.; Perry, Russell W.; Gleizes, Chris; Dammers, Wolf; Liedtke, Theresa L.

2016-01-01

Hatchery ‘recycling’ programs have been used to increase angling opportunities by re-releasing fish into a river after they returned to a hatchery or fish trap. Recycling is intended to increase opportunities for fishermen, but this strategy could affect wild fish populations if some recycled fish remain in the river and interact with wild fish populations. To quantify hatchery return and angler harvest rates of recycled steelhead, we conducted a 2-year study on the Cowlitz River, Washington. A total of 1051 steelhead were recycled, including 218 fish that were radio-tagged. Fates of recycled steelhead were similar between years: 48.4% returned to the hatchery, 19.2% were reported captured by anglers, and 32.4% remained in the river. A multistate model quantified the effects of covariates on hatchery return and angler harvest rates, which were positively affected by river discharge and negatively affected by time since release. However, hatchery return rates increased and angler harvest rates decreased during periods of increasing discharge. A total of 21.1% (46 fish) of the radio-tagged steelhead failed to return to the hatchery or be reported by anglers, but nearly half of those fish (20 fish) appeared to be harvested and not reported. The remaining tagged fish (11.9% of the radio-tagged population) were monitored into the spawning period, but only five fish (2.3% of the radio-tagged population) entered tributaries where wild steelhead spawning occurs. Future research focused on straying behaviour, and spawning success of recycled steelhead may further advance the understanding of the effects of recycling as a management strategy.

Colville Tribal Fish Hatchery, 2001-2002 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arteburn, John; Christensen, David

2003-03-01

Federal hydropower projects as well as private power utility systems have had a major negative impact upon anadromous fish resources that once flourished in the Columbia River and it's tributaries. Several areas have been completely blocked to anadromous fish by dams, destroying the primary food resource (salmon) for many native people forcing them to rely heavily upon resident fish to replace these lost resources. The Colville Tribal Fish Hatchery is an artificial production program that addresses the loss of anadromous fish resources in the Upper Columbia Sub-Region within the ''blocked area'' created by the construction of Chief Joseph and Grandmore » Coulee Dams. This project enhances resident fisheries located in the Intermountain and Columbia Cascade Provinces, specifically within the Colville Reservation portion of the Upper Columbia, SanPoil and Oakanogan Sub-Basins. The project partially mitigates for anadromous fish losses through protection/augmentation of resident fish populations to enhance fishery potential (i.e. in-place, out-of-kind mitigation) pursuant to Resident Fish Substitution Policy of the Northwest Power Planning Councils Fish and Wildlife Program. The hatchery was accepted into the Council's Fish and Wildlife Program in 1984 and the hatchery was completed in 1990. The Colville Tribal Hatchery (CTH) is located on the northern bank of the Columbia River just down stream of the town of Bridgeport, Washington that is just down stream of Chief Joseph Dam. The hatchery is located on land owned by the Colville Tribes. The minimum production quota for this facility is 22,679 kg (50,000 lbs.) of trout annually. All fish produced are released into reservation waters, including boundary waters in an effort to provide a successful subsistence/recreational fishery for Colville Tribal members and provide for a successful nonmember sport fishery. The majority of the fish distributed from the facility are intended to support ''carry-over'' fisheries. Fish produced at the facility are intended to be of sufficient quality and quantity to meet specific monitoring and evaluation goals and objectives outlines in the 2002 statement of work (SOW).« less

Nez Perce Tribal Hatchery Program : Draft Environmental Impact Statement.

DOE Office of Scientific and Technical Information (OSTI.GOV)

United States. Bonneville Power Administration; Nez Perce Tribal Hatchery

1996-06-01

Bonneville Power Administration, the Bureau of Indian Affairs, the Nez Perce Tribe propose a supplementation program to restore chinook salmon to the Clearwater River Subbasin in Idaho. The Clearwater River is a tributary to the Snake River, which empties into the Columbia River. The Nez Perce Tribe would build and operate two central incubation and rearing hatcheries and six satellite facilities. Spring, summer and fall chinook salmon would be reared and acclimated to different areas in the Subbasin and released at the hatchery and satellite sites or in other watercourses throughout the Subbasin. The supplementation program differs from other hatcherymore » programs because the fish would be released at different sizes and would return to reproduce naturally in the areas where they are released. Several environmental issues were identified during scoping: the possibility that the project would fail if mainstem Columbia River juvenile and adult passage problems are not solved; genetic risks to fish listed as endangered or threatened; potential impacts to wild and resident fish stocks because of increase competition for food and space; and water quality. The Proposed Action would affect several important aspects of Nez Perce tribal life, primarily salmon harvest, employment, and fisheries management.« less

Testing for genetic differences in survival and growth between hatchery and wild Chinook salmon from Warm Springs River, Oregon (Study sites: Warm Springs Hatchery and Little White Salmon River; Stocks: Warm Springs hatchery and Warm Springs River wild; Year classes: 1992 and 1996): Chapter 8

USGS Publications Warehouse

Rubin, Stephen P.; Reisenbichler, Reginald R.; Wetzel, Lisa A.; Leonetti,; Rubin, Stephen P.; Reisenbichler, Reginald R.; Wetzel, Lisa A.; Hayes, Michael C.

2012-01-01

The program at Warm Springs National Fish Hatchery in north - central Oregon was initiated with spring Chinook salmon Oncorhynchus tshawytscha from the Warm Springs River. Managers included wild fish in the broodstock most years and avoided artificial selection to minimize genetic divergence from the wild founder population. We tested for genetic differences in survival and growth between the hatchery and wild populations to ascertain whether this goal has been achieved. Progeny of hatchery x hatchery (HH), hatchery female x wild male (HW), and wild x wild (WW) crosses were genetically marked at the sSOD - 1* allozyme locus and released together as unfed fry in hatchery ponds in 1992 and 1996 and in the Little White Salmon River, in south - central Washington, in 1996. Fish were evaluated to returning adult at the hatchery and over their freshwater residence of 16 months in the stream. The three crosses differed on several measures including survival to outmigration in the stream (WW>HH>HW) and juvenile growth in the hatchery (1992 year - class; WW>HW>HH); however, results may have been confounded. The genetic marks were found to differentially effect survival in a companion study (HH mark favored over WW mark; HW mark intermediate). Furthermore, HW survival in the current study was neither intermediate, as would be expect ed from additive genetic effects, nor similar to that of HH fish as would be expected from maternal effects since HW and HH fish were maternal half - siblings. Finally, the unexpected performance of HW fish precludes ruling out maternal differences between hatchery and wild mothers as the cause of differences between HH and WW fish. The key finding that survival of HH fish in a stream was 0.91 that for WW fish, indicating a small loss of fitness for natural rearing in the hatchery population, is valid only if three conditions hold: (1) any selection on the genetic marks was in the same direction as in the companion study, (2) lower survival in the stream for HW than for HH fish resulted because some HW families were genetically atypical, not from problems w ith either pure type, and (3) lower survival for HH than for WW fish was not due to maternal effects. Although all three conditions had support, none of it was conclusive. This study provides only suggestions, not definitive answers for the primary quest ion of whether the hatchery population has diverged genetically from its wild founder population in fitness - related traits.

Natural Reproductive Success and Demographic Effects of Hatchery-Origin Steelhead in Abernathy Creek, Washington : Annual Report 2008.

DOE Office of Scientific and Technical Information (OSTI.GOV)

U.S. Fish & Wildlife Service, Abernathy Fish Technology Center

2008-12-01

Many hatchery programs for steelhead pose genetic or ecological risks to natural populations because those programs release or outplant fish from non-native stocks. The goal of many steelhead programs has been to simply provide 'fishing opportunities' with little consideration given to conservation concerns. For example, the Washington Department of Fish and Wildlife (WDFW) has widely propagated and outplanted one stock of winter-run steelhead (Chambers Creek stock) and one stock of summer-run steelhead (Skamania stock) throughout western Washington. Biologists and managers now recognize potential negative effects can occur when non-native hatchery fish interact biologically with native populations. Not only do non-nativemore » stocks pose genetic and ecological risks to naturally spawning populations, but non-native fish stray as returning adults at a much higher rate than do native fish (Quinn 1993). Biologists and managers also recognize the need to (a) maintain the genetic resources associated with naturally spawning populations and (b) restore or recover natural populations wherever possible. As a consequence, the U.S. Fish & Wildlife Service (USFWS) and the NOAA Fisheries have been recommending a general policy that discourages the use of non-native hatchery stocks and encourages development of native broodstocks. There are two primary motivations for these recommendations: (1) reduce or minimize potential negative biological effects resulting from genetic or ecological interactions between hatchery-origin and native-origin fish and (2) use native broodstocks as genetic repositories to potentially assist with recovery of naturally spawning populations. A major motivation for the captive-rearing work described in this report resulted from NOAA's 1998 Biological Opinion on Artificial Propagation in the Columbia River Basin. In that biological opinion (BO), NOAA concluded that non-native hatchery stocks of steelhead jeopardize the continued existence of U.S. Endangered Species Act (ESA)-listed, naturally spawning populations in the Columbia River Basin. As a consequence of that BO, NOAA recommended - as a reasonable and prudent alternative (RPA) - that federal and state agencies phase out non-native broodstocks of steelhead and replace them with native broodstocks. However, NOAA provided no guidance on how to achieve that RPA. The development of native broodstocks of hatchery steelhead can potentially pose unacceptable biological risks to naturally spawning populations, particularly those that are already listed as threatened or endangered under the ESA. The traditional method of initiating new hatchery broodstocks of anadromous salmonid fishes is by trapping adults during their upstream, spawning migration. However, removing natural-origin adults from ESA listed populations may not be biologically acceptable because such activities may further depress those populations via 'broodstock mining'. In addition, trapping adult steelhead may be logistically unfeasible in many subbasins due to high water flows in the spring, when steelhead are moving upstream to spawn, that will often 'blow out' temporary weirs. Additional risks associated with trapping adults include genetic founder effects and difficulties meeting minimum, genetic effective number of breeders without 'mining' the wild population to potential extinction. As a result, alternative methods for developing native broodstocks are highly desired. One alternative for developing native broodstocks, particularly when the collection of adults is logistically unfeasible or biologically unacceptable, is captive rearing of natural-origin juveniles to sexual maturity. In this approach, pre-smolt juveniles are collected from the stream or watershed for which a native broodstock is desired, and those juveniles are raised to sexual maturity in a hatchery. Those hatchery-reared adults then become the broodstock source for gametes and initial progeny releases. Such a captive rearing program offers many genetic advantages over traditional adult-trapping programs for developing native broodstocks: (1) Large numbers of juveniles can be collected from the wild with only minimal impacts to naturally spawning populations because juvenile (age 0+parr)-to-adult survivals are typically very small (<1%) under natural conditions. (2) The genetic base of the broodstock (i.e. genetic effective population size) can be substantially larger for juveniles than adults because juveniles can theoretically represent the offspring of all adults that spawned successfully within a stream or watershed, as opposed to trapping only a small portion of returning adults for broodstock. (3) Collecting juveniles for broodstock can substantially reduce the risk of genetically 'swamping' naturally spawning populations with hatchery-origin fish (i.e. via a 'Ryman-Laikre effect') as occurs when hatchery-released fish represent the progeny of a relatively small number of trapped adults.« less

Spring Chinook Salmon Oncorhynchus tshawytscha Supplementation in the Clearwater Subbasin ; Nez Perce Tribal Hatchery Monitoring and Evaluation Project, 2007 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Backman, Thomas; Sprague, Sherman; Bretz, Justin

The Nez Perce Tribal Hatchery (NPTH) program has the following goals (BPA, et al., 1997): (1) Protect, mitigate, and enhance Clearwater Subbasin anadromous fish resources; (2) Develop, reintroduce, and increase natural spawning populations of salmon within the Clearwater Subbasin; (3) Provide long-term harvest opportunities for Tribal and non-Tribal anglers within Nez Perce Treaty lands within four generations (20 years) following project initiation; (4) Sustain long-term fitness and genetic integrity of targeted fish populations; (5) Keep ecological and genetic impacts to non-target populations within acceptable limits; and (6) Promote Nez Perce Tribal management of Nez Perce Tribal Hatchery Facilities and productionmore » areas within Nez Perce Treaty lands. The NPTH program was designed to rear and release 1.4 million fall and 625,000 spring Chinook salmon. Construction of the central incubation and rearing facility NPTH and spring Chinook salmon acclimation facilities were completed in 2003 and the first full term NPTH releases occurred in 2004 (Brood Year 03). Monitoring and evaluation plans (Steward, 1996; Hesse and Cramer, 2000) were established to determine whether the Nez Perce Tribal Hatchery program is achieving its stated goals. The monitoring and evaluation action plan identifies the need for annual data collection and annual reporting. In addition, recurring 5-year program reviews will evaluate emerging trends and aid in the determination of the effectiveness of the NPTH program with recommendations to improve the program's implementation. This report covers the Migratory Year (MY) 2007 period of the NPTH Monitoring & Evaluation (M&E) program. There are three NPTH spring Chinook salmon treatment streams: Lolo Creek, Newsome Creek, and Meadow Creek. In 2007, Lolo Creek received 140,284 Brood Year (BY) 2006 acclimated pre-smolts at an average weight of 34.9 grams per fish, Newsome Creek received 77,317 BY 2006 acclimated pre-smolts at an average of 24.9 grams per fish, and Meadow Creek received 53,425 BY 2006 direct stream release parr at an average of 4.7 grams per fish. Natural and hatchery origin spring Chinook salmon pre-smolt emigrants were monitored from September - November 2006 and smolts from March-June 2007. Data on adult returns were collected from May-September. A suite of performance measures were calculated including total adult and spawner escapement, juvenile production, and survival probabilities. These measures were used to evaluate the effectiveness of supplementation and provide information on the capacity of the natural environment to assimilate and support supplemented salmon populations.« less

Endocrine and physiological changes in Atlantic salmon smolts following hatchery release

USGS Publications Warehouse

McCormick, S.D.; O'Dea, M. F.; Moeckel, Amy M.; Bjornsson, Bjorn Thrandur

2003-01-01

Physiological and endocrine changes during smolt development were examined in Atlantic salmon (Salmo salar) reared and released as part of a restoration program on the Connecticut River and its tributaries. Fish were reared in a cold water hatchery in Pittsford, VT and released into the Farmington River, CT (a major tributary of the Connecticut River) or into 'imprint ponds' fed by the Farmington River. Smelts were recaptured 10-20 days after their release at a smolt bypass facility 16 km downstream of their release site. Fish sampled at the hatchery from January to May had only moderate smolt development based on salinity tolerance, gill Na+,K+-ATPase activity and hormone profiles. In contrast, smolts released into the river or imprint ponds had higher salinity tolerance, gill Na+,K+-ATPase activity, plasma growth hormone, insulin-like growth factor I (IGF-I) and thyroxine than smolts that remained in the hatchery. These physiological and endocrine changes were nearly identical to those of smolts that had been released into the river 2 years earlier as fry and were captured as active migrants at the same bypass facility (stream-reared smolts). The stomach contents as a percent of body weight (primarily aquatic insects) varied greatly among individuals and were greater in hatchery-reared fish than stream-reared smolts. Results from the rearing of hatchery fish at temperatures similar to that of the Farmington River indicate that some of the physiological changes may be due to increased temperature after release, though other factors may also be involved. The results indicate that substantial physiological smolt development can occur after hatchery release, coincident with downstream migration. ?? 2003 Published by Elsevier Science B.V.

Spokane Tribal Hatchery, 2004 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Peone, Tim L.

2005-03-01

Due to the construction and operation of Grand Coulee Dam (1939), anadromous salmon have been eradicated and resident fish populations permanently altered in the upper Columbia River region. Federal and private hydropower dam operations throughout the Columbia River system severely limits indigenous fish populations in the upper Columbia. Artificial production has been determined appropriate for supporting a harvestable fishery for kokanee salmon (Oncorhynchus nerka) and rainbow trout (Oncorhynchus mykiss) in Lake Roosevelt and Banks Lake (Grand Coulee Dam impoundments). A collaborative multi-agency artificial production program for the Lake Roosevelt and Banks Lake fisheries exists consisting of the Spokane Tribal Hatchery,more » Sherman Creek Hatchery, Ford Trout Hatchery and the Lake Roosevelt Kokanee and Rainbow Trout Net Pen Rearing Projects. These projects operate complementary of one another to target an annual release of 1 million yearling kokanee and 500,000 yearling rainbow trout for Lake Roosevelt and 1.4 million kokanee fry/fingerlings for Banks Lake. Fish produced by this project in 2004 to meet collective fish production and release goals included: 1,655,722 kokanee fingerlings, 537,783 rainbow trout fingerlings and 507,660 kokanee yearlings. Kokanee yearlings were adipose fin clipped before release. Stock composition consisted of Lake Whatcom kokanee, 50:50 diploid-triploid Spokane Trout Hatchery (McCloud River) rainbow trout and Phalon Lake red-band rainbow trout. All kokanee were marked with either thermal, oxytetracyline or fin clips prior to release. Preliminary 2004 Lake Roosevelt fisheries investigations indicate hatchery/net pen stocking significantly contributed to harvestable rainbow trout and kokanee salmon fisheries. An increase in kokanee harvest was primarily owing to new release strategies. Walleye predation, early maturity and entrainment through Grand Coulee Dam continues to have a negative impact on adult kokanee returns and limits the success of hatchery/net pen stocking on the number of harvestable fish. Recommendations for future hatchery/net pen operations include use of stocks compatible or native to the upper Columbia River, continue hatchery-rearing practices to reduce precocity rates of kokanee and continue new kokanee stocking strategies associated with increased kokanee harvest rates.« less

Reproductive Ecology of Yakima River Hatchery and Wild Spring Chinook; Yakima/Klickitat Fisheries Project Monitoring and Evaluation Report 3 of 7, 2003-2004 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Knudsen, Curtis

2004-05-01

This is the third in a series of annual reports that address reproductive ecological research and comparisons of hatchery and wild origin spring chinook in the Yakima River basin. Data have been collected prior to supplementation to characterize the baseline reproductive ecology, demographics and phenotypic traits of the unsupplemented upper Yakima population, however this report focuses on data collected on hatchery and wild spring chinook returning in 2003; the third year of hatchery adult returns. This report is organized into three chapters, with a general introduction preceding the first chapter and summarizes data collected between April 1, 2003 and Marchmore » 31, 2004 in the Yakima basin. Summaries of each of the chapters in this report are included below. A major component of determining supplementation success in the Yakima Klickitat Fishery Project's spring chinook (Oncorhynchus tshawytscha) program is an increase in natural production. Within this context, comparing upper Yakima River hatchery and wild origin fish across traits such as sex ratio, age composition, size-at-age, fecundity, run timing and gamete quality is important because these traits directly affect population productivity and individual fish fitness which determine a population's productivity.« less

Emigration of Natural and Hatchery Chinook Salmon and Steelhead Smolts from the Imnaha River, Oregon, 1998-1999 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cleary, Peter J.; Blenden, Michael L.; Kucera, Paul A.

2002-08-01

This report summarizes the results of the Lower Snake River Compensation Plan Hatchery Evaluation Studies (LSRCP) and the Imnaha Smolt Monitoring Program (SMP) for the 1999 smolt migration from the Imnaha River, Oregon. These studies were designed and closely coordinated to provide information about juvenile natural and hatchery chinook salmon (Oncorhynchus tshawytscha) and steelhead (Oncorhynchus mykiss) biological characteristics, behavior and emigrant timing, survival, arrival timing and travel time to the Snake River dams and McNary Dam on the Columbia River. Data collected from these studies are shared with the Fish Passage Center (FPC). These data are essential to quantify smoltmore » survival rates under the current passage conditions and to evaluate the future recovery strategies that seek to optimize smolt survival through the hydroelectric system. Information shared with the FPC assists with in-season shaping of flow and spill management requests in the Snake River reservoirs. The Bonneville Power Administration and the United States Fish and Wildlife Service contracted the Nez Perce Tribe (NPT) to monitor emigration timing and tag 21,200 emigrating natural and hatchery chinook salmon and steelhead smolts from the Imnaha River during the spring emigration period (March 1-June 15) with passive integrated transponder (PIT) tags. The completion of trapping in the spring of 1999 marked the eighth year of emigration studies on the Imnaha River and the sixth year of participating in the FPC smolt monitoring program. Monitoring and evaluation objectives were to: (1) Determine spring emigration timing of chinook salmon and steelhead smolts collected at the Imnaha River trap. (2) Evaluate effects of flow, temperature and other environmental factors on emigration timing. (3) Monitor the daily catch and biological characteristics of juvenile chinook salmon and steelhead smolts collected at the Imnaha River screw trap. (4) Determine emigration timing, travel time, and in-river survival of PIT tagged hatchery chinook salmon smolts released at the Imnaha River acclimation facility to the Imnaha River Trap. (5) Determine arrival timing, travel time and estimated survival of PIT tagged hatchery and natural chinook salmon and natural and hatchery steelhead smolts from the Imnaha River to Snake and Columbia river dams.« less

Emigration of Natural and Hatchery Naco x (Chinook salmon; Oncorhynchus tshawytscha) and Heeyey (Steelhead; Oncorhynchus mykiss) Smolts from the Imnaha River, Oregon from 5 October 2006 to 21 June 2007, Annual Report 2007.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Michaels, Brian; Espinosa, Neal

2009-02-18

This report summarizes the Nez Perce Tribe (NPT) Department of Fisheries Resources Management (DFRM) results for the Lower Snake River Compensation Plan (LSRCP) Hatchery Evaluation studies and the Imnaha River Smolt Monitoring Program (SMP) for the 2007 smolt migration from the Imnaha River, Oregon. These studies are closely coordinated and provide information about juvenile natural and hatchery spring/summer Naco x (Chinook Salmon; Oncorhynchus tshawytscha) and Heeyey (steelhead; O. mykiss) biological characteristics, emigrant timing, survival, arrival timing and travel time to the Snake River dams and McNary Dam (MCD) on the Columbia River. These studies provide information on listed Naco xmore » (Chinook salmon) and Heeyey (steelhead) for the Federal Columbia River Power System (FCRPS) Biological Opinion (NMFS 2000). The Lower Snake River Compensation Plan program's goal is to maintain a hatchery production program of 490,000 Naco x (Chinook salmon) and 330,000 Heeyey (steelhead) for annual release in the Imnaha River (Carmichael et al. 1998, Whitesel et al. 1998). These hatchery releases occur to compensate for fish losses due to the construction and operation of the four lower Snake River hydroelectric facilities. One of the aspects of the LSRCP hatchery evaluation studies in the Imnaha River is to determine natural and hatchery Naco x (Chinook salmon) and Heeyey (steelhead) smolt performance, emigration characteristics and survival (Kucera and Blenden 1998). A long term monitoring effort was established to document smolt emigrant timing and post release survival within the Imnaha River, estimate smolt survival downstream to McNary Dam, compare natural and hatchery smolt performance, and collect smolt-to-adult return information. This project collects information for, and is part of, a larger effort entitled Smolt Monitoring by Federal and Non-Federal Agencies (BPA Project No. 198712700). This larger project provides data on movement of smolts out of major drainages and past dams on the Snake River and Columbia River. In season indices of migration strength and migration timing are provided for the run-at large at key monitoring sites. Marked smolts are utilized to measure travel time and estimate survival through key index reaches. Fish quality and descaling measures are recorded at each monitoring site and provide indicators of the health of the run. Co-managers in the Imnaha River subbasin (Ecovista 2004) have identified the need to collect information on life history, migration patterns, juvenile emigrant abundance, reach specific smolt survivals, and Smolt-to-Adult Return rates (SAR's) for both Heeyey (steelhead) and Naco x (Chinook salmon) smolts. The current study provides information related to the majority of the high priority data needs. Current funding does not allow for determination of a total (annual) juvenile emigrant abundance and lack of adult passive integrated transponder (PIT) tag detectors at the mouth of the Imnaha River results in the inability to calculate tributary specific SAR's. Information is shared with the Fish Passage Center (FPC) on a real time basis during the spring emigration period. The Bonneville Power Administration (BPA) and the United States Fish and Wildlife Service (USFWS) contracted the NPT to monitor emigration timing and tag up to 19,000 emigrating natural and hatchery Naco x (Chinook salmon) and Heeyey (steelhead) smolts from the Imnaha River with passive integrated transponder (PIT) tags. The completion of trapping in the spring of 2007 marked the 16th year of emigration studies on the Imnaha River, and the 14th year of participating in the FPC smolt monitoring program. Monitoring and evaluation objectives were to: (1) Evaluate effects of flow, temperature and other environmental factors on juvenile migration timing. (2) Determine emigration timing, travel time, and in-river survival of PIT tagged hatchery Naco x (Chinook salmon) smolts released at the Imnaha River acclimation facility to the Imnaha River juvenile migration trap. (3) Monitor the daily catch and biological characteristics of juvenile Naco x (Chinook salmon) and Heeyey (steelhead) smolts collected at the Imnaha River screw trap. (4) Determine spring emigration timing of Naco x (Chinook salmon) and Heeyey (steelhead) smolts collected at the Imnaha River juvenile migration trap. (5) Compare emigration characteristics and survival rates of natural fall and spring tagged juvenile Naco x (Chinook salmon). (6) Determine arrival timing, travel time and estimated survival of PIT tagged natural and hatchery Naco x (Chinook salmon) and natural and hatchery Heeyey (steelhead) smolts from the Imnaha River to Snake and Columbia River dams.« less

Spokane Tribal Hatchery, 2003 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Peone, Tim L.

2004-05-01

Due to the construction and operation of Grand Coulee Dam (1939), anadromous salmon have been eradicated and resident fish populations permanently altered in the upper Columbia River region. Federal and private hydropower dam operations throughout the Columbia River system severely limits indigenous fish populations in the upper Columbia. Artificial production has been determined appropriate for supporting a harvestable fishery for kokanee salmon (Oncorhynchus nerka) and rainbow trout (Oncorhynchus mykiss) in Lake Roosevelt and Banks Lake (Grand Coulee Dam impoundments). A collaborative multi-agency artificial production program for the Lake Roosevelt and Banks Lake fisheries exists consisting of the Spokane Tribal Hatchery,more » Sherman Creek Hatchery, Ford Trout Hatchery and the Lake Roosevelt Kokanee and Rainbow Trout Net Pen Rearing Projects. These projects operate complementary of one another to target an annual release of 1 million yearling kokanee and 500,000 yearling rainbow trout for Lake Roosevelt and 1.4 million kokanee fry/fingerlings for Banks Lake. Combined fish stocking by the hatcheries and net pen rearing projects in 2003 included: 899,168 kokanee yearlings released into Lake Roosevelt; 1,087,331 kokanee fry/fingerlings released into Banks Lake, 44,000 rainbow trout fingerlings and; 580,880 rainbow trout yearlings released into Lake Roosevelt. Stock composition of 2003 releases consisted of Lake Whatcom kokanee, 50:50 diploid-triploid Spokane Trout Hatchery (McCloud River) rainbow trout and Phalon Lake red-band rainbow trout. All kokanee were marked with either thermal, oxytetracyline or fin clips prior to release. Preliminary 2003 Lake Roosevelt fisheries investigations indicate hatchery/net pen stocking significantly contributed to harvestable rainbow trout and kokanee salmon fisheries. An increase in kokanee harvest was primarily owing to new release strategies. Walleye predation, early maturity and entrainment through Grand Coulee Dam continues to have a negative impact on adult kokanee returns and limits the success of hatchery/net pen stocking on the number of harvestable fish. Preliminary results of gonad necropsies indicate a reduced incidence of precocious kokanee produced at the Spokane Tribal Hatchery in 2003. This was a probable attribute of change in hatchery rearing practices employed on 2002 brood year kokanee produced in 2003, primarily thermal manipulation and feed protein source. Kokanee and rainbow trout fingerlings transferred to Lake Roosevelt and Banks Lake net pen rearing operations in the fall of 2003 for subsequent release as yearlings in 2004 consisted of 645,234 rainbow trout and 627,037 kokanee salmon. A total of 590,000 Lake Whatcom kokanee fingerlings were carried over at the Spokane Tribal Hatchery for stocking as yearlings in 2004. Recommendations for future hatchery/net pen operations include use of stocks compatible or native to the upper Columbia River, continue hatchery-rearing practices to reduce precocity rates of kokanee and continue new kokanee stocking strategies associated with increased kokanee harvest rates.« less

Documenting utility of paddlefish otoliths for quantification of metals using inductively coupled plasma mass spectrometry

USGS Publications Warehouse

Long, James M.; Schaffler, James J.

2013-01-01

RATIONALE The otoliths of the inner ear of fishes record the environment of their surrounding water throughout their life. For paddlefish (Polyodon spathula), otoliths have not been routinely used by scientists since their detriments were outlined in the early 1940s. We sought to determine if paddlefish otoliths were useful for resolving elemental information contained within. METHODS Adult paddlefish were collected from two wild, self-sustaining populations in Oklahoma reservoirs in the Arkansas River basin. Juveniles were obtained from a hatchery in the Red River basin of Oklahoma. Otoliths were removed and laser ablation, inductively coupled plasma mass spectrometry (ICP-MS) was used to quantify eight elements (Li, Mg, Mn, Rb, Sr, Y, Ba, and Pb) along the core and edge portions, which were analyzed for differences between otolith regions and among paddlefish sources. RESULTS Differences were found among samples for six of the eight elements examined. Otoliths from Red River basin paddlefish born in a hatchery had significantly lower amounts of Mg and Mn, but higher levels of Rb than otoliths from wild paddlefish in the Arkansas River basin. Concentrations of Y, Sr, and Ba were reduced on the edges of adult paddlefish from both reservoirs compared with the cores. CONCLUSIONS This research shows the utility of using an ICP-MS analysis of paddlefish otoliths. Future research that seeks to determine sources of paddlefish production, such as which reservoir tributaries are most important for reproduction or what proportion of the population is composed of wild versus hatchery-produced individuals, appears promising. Published in 2013. This article is a U.S. Government work and is in the public domain in the USA.

IsoMark - a comprehensive assessment of the potential of isotopes in hard parts of freshwater fish to determine origin and migratory patterns using LA-(MC)-ICP-MS

NASA Astrophysics Data System (ADS)

Zitek, Andreas; Irrgeher, Johanna; Sturm, Monika; Brunner, Marion; Dillinger, Benno; Prohaska, Thomas

2010-05-01

The ‘IsoMark' project focuses for the first time on the comprehensive investigation of microchemical information (elemental fingerprint of Ca, Sr, Na, Ba, Mg; isotopic fingerprint of Sr, Ca, and additionally of C and O) in different hard parts of several typical European freshwater fish species like brown trout (Salmo trutta f.f., L.), European grayling (Thymallus thymallus, L.) or nase (Chondrostoma nasus, L.) and the barbel (Barbus barbus, L.). Laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) is used as major technique for the direct in situ analysis of trace elements and isotopes, whereby the employment of a multiple collector - inductively coupled plasma - mass spectrometer (MC-ICP-MS) enables high precise isotope ratio analysis of such sample matrices due to its simultaneous detection capabilities. Microchemical patterns in hard parts of farmed and wild fish are analysed resulting in natural site specific elemental and isotopic signatures. Within a pilot study the potential to discriminate between wild and hatchery trout by chronological microchemical patterns of different otolith regions in relation to site specific water chemistry was documented. 100% accuracy of classification of fish to life stage specific habitats and therefore to their origin was achieved by the elemental ratios 88Sr/43Ca, 23Na/43Ca and the isotope ratio of 87Sr/86Sr. Clear differences in otolith chemistry were found, when fish experienced different geological units or specific environmental situations (e.g. groundwater) in hatcheries during a certain period of their life. These results proved the concept that natural microchemical patterns in hard parts linked to specific life stages of fish represent a valuable tool for a wide variety of ecological questions, e.g. discriminating wild and hatchery fish without the necessity of inducing any other artificial mark, or studying natural migration phenomena on small spatial scales in freshwater systems within geologically diverse river catchments.

Stable isotope tracing of trout hatchery carbon to sediments and foodwebs of limestone spring creeks.

PubMed

Hurd, Todd M; Jesic, Slaven; Jerin, Jessica L; Fuller, Nathan W; Miller, David

2008-11-01

Limestone springs support productive ecosystems and fisheries, yet aquaculture may modify or impair these ecosystems. We determined trout hatchery organic contribution to spring creek sediments and foodwebs with natural abundance stable isotope methods. Hatchery feed, waste, and trout were significantly enriched in delta(13)C relative to autotrophs and wild fish. Spring creek sediments were enriched in delta(13)C toward the hatchery endmember relative to reference streams without hatcheries and relative to a larger larger-order, spring-influenced stream. Contribution of hatchery C to spring creek sediments was greatest during March and associated with greatest sediment %C. Contribution of hatchery C to pollution-tolerant isopod diet was 39-51% in a stream receiving limestone spring water via hatchery effluent. Isopods of one spring creek also relied on hatchery-derived C within one month of hatchery closure. Four years later, less pollution pollution-tolerant amphipods dominated and consumed non-vascular over vascular autotrophs (86%). Isopods of a second spring creek with an active hatchery did not appear to be using hatchery matter directly, but were enriched in delta(34)S relative to a spring creek tributary with no hatchery influence. Isopods in both of these streams were relatively enriched in delta(15)N, indicating general nutrient enrichment from surrounding agricultural land use. The contribution of hatchery vs. wild fish in diet of herons and egrets was traced with delta(13)C of guano. These birds were strongly dependent on stocked trout in a spring creek with a recently closed state trout hatchery, and also near another large, state-run hatchery. Heron dependence on hatchery fish in the spring creek decreased with time since hatchery closure. Use of stable isotope natural abundance techniques in karst spring creeks can reveal stream impairment due to aquaculture, specific C sources to bio-indicating consumers, losses of farmed fish to predation, and potential exposure of higher order consumers to contaminants associated with aquaculture.

Spokane Tribal Hatchery, 2002 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Peone, Tim L.

2003-03-01

The Spokane Tribal Hatchery (Galbraith Springs) project originated from the Northwest Power Planning Council (NPPC) 1987 Columbia Basin Fish and Wildlife Program. The goal of this project is to aid in the restoration and enhancement of the Lake Roosevelt and Banks Lake fisheries adversely affected by the construction and operation of Grand Coulee Dam. The objective is to produce kokanee salmon and rainbow trout for release into Lake Roosevelt for maintaining a viable fishery. The goal and objective of this project adheres to the NPPC Resident Fish Substitution Policy and specifically to the biological objectives addressed in the NPPC Columbiamore » River Basin Fish and Wildlife Program to mitigate for hydropower related fish losses in the blocked area above Chief Joseph/Grand Coulee Dams.« less

50 CFR 223.102 - Enumeration of threatened marine and anadromous species.

Code of Federal Regulations, 2014 CFR

2014-10-01

...; Imnaha River Program; Big Sheep Creek Program; McCall Hatchery Program; Johnson Creek Artificial... the U.S. Virgin Islands, and Cuba's EEZ, and further delineated by the following boundary lines... Aptos Creek, and all drainages of San Francisco and San Pablo Bays eastward to Chipps Island at the...

Migratory behavior of Chinook salmon microjacks reared in artificial and natural environments

USGS Publications Warehouse

Hayes, Michael C.; Rubin, Steve P.; Reisenbichler, Reginald R.; Wetzel, Lisa A.

2015-01-01

Emigration was evaluated for hatchery Chinook salmon (Oncorhynchus tshawytscha) microjacks (age-1 mature males) and immature parr (age-1 juveniles, both sexes) released from both a hatchery and a natural stream (fish released as fry). In the hatchery, volitional releases (∼14 to 15 months post-fertilization) to an adjacent river occurred during October–November. The hatchery release was monitored by using an experimental volitional release that diverted fish to a neighboring raceway. Fish captured during the experimental release (range 361–4,321 volitional migrants) were made up of microjacks and immature parr. Microjacks were found only in the migrant samples, averaged 18% (range 0–52%) of all migrants, and were rarely found in non-migrant samples. In comparison, immature parr were common in both the migrant and non-migrant samples. Microjacks were significantly longer (9%), heavier (36%), and had a greater condition factor (16%) than migrant immature parr (P<0.01). In addition, they differed significantly (P<0.01) from non-migrant immature parr; 10% longer, 44% heavier and 14% greater condition factor. In natural streams, microjacks were captured significantly earlier (P<0.01) than immature parr during the late-summer/fall migration and comprised 9–89% of all fish captured. Microjacks have the potential to contribute to natural spawning populations but can also represent a loss of productivity to hatchery programs or create negative effects by introducing non-native genes to wild populations and should be monitored by fishery managers.

Development of an Applied Fisheries Science Program for Native Alaskans at Sheldon Jackson College. Seventh Progress Report.

ERIC Educational Resources Information Center

Seifert, Mel

Covering the period July 1 thru December 31, 1977, the seventh semi-annual report summarizes the first half of the third year of operation of the educational and hatchery programs. The first section details the educational component, i.e., academic program, high school visitation program, educational and operational activities, student…

40 CFR 122.24 - Concentrated aquatic animal production facilities (applicable to State NPDES programs, see § 123...

Code of Federal Regulations, 2010 CFR

2010-07-01

... Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) WATER PROGRAMS EPA ADMINISTERED PERMIT PROGRAMS: THE... animal production facility means a hatchery, fish farm, or other facility which meets the criteria in... any warm or cold water aquatic animal production facility as a concentrated aquatic animal production...

40 CFR 122.24 - Concentrated aquatic animal production facilities (applicable to State NPDES programs, see § 123...

Code of Federal Regulations, 2011 CFR

2011-07-01

... Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) WATER PROGRAMS EPA ADMINISTERED PERMIT PROGRAMS: THE... animal production facility means a hatchery, fish farm, or other facility which meets the criteria in... any warm or cold water aquatic animal production facility as a concentrated aquatic animal production...

Guidance documents: Continued support to improve operations of fish hatcheries and field sites to reduce the impact or prevent establishment of New Zealand Mudsnails and other invasive mollusks

USGS Publications Warehouse

Moffitt, Christine M.

2017-01-01

This project tested and revised a risk assessment/management tool authored by Moffitt and Stockton designed to provide hatchery biologists and others a structure to measure risk and provide tools to control, prevent or eliminate invasive New Zealand mudsnails (NZMS) and other invasive mollusks in fish hatcheries and hatchery operations. The document has two parts: the risk assessment tool, and an appendix that summarizes options for control or management.The framework of the guidance document for risk assessment/hatchery tool combines approaches used by the Hazard Analysis and Critical Control Points (HACCP) process with those developed by the Commission for Environmental Cooperation (CEC), of Canada, Mexico, and the United States, in the Tri-National Risk Assessment Guidelines for Aquatic Alien Invasive Species. The framework approach for this attached first document assesses risk potential with two activities: probability of infestation and consequences of infestation. Each activity is treated equally to determine the risk potential. These two activities are divided into seven basic elements that utilize scientific, technical, and other relevant information in the process of the risk assessment. To determine the probability of infestation four steps are used that have scores reported or determined and averaged. This assessment follows a familiar HACCP process to assess pathways of entry, entry potential, colonization potential, spread potential. The economic, environmental and social consequences are considered as economic impact, environmental impact, and social and cultural influences.To test this document, the Principal Investigator worked to identify interested hatchery managers through contacts at regional aquaculture meetings, fish health meetings, and through the network of invasive species managers and scientists participating in the Western Regional Panel on Aquatic Nuisance Species and the 100th Meridian Initiative's Columbia River Basin Team, and the Western New Zealand Mudsnail Conference in Seattle. Targeted hatchery workshops were conducted with staff at Dworshak National Fish Hatchery Complex (ID), Similkameen Pond, Oroville WA, and Ringold Springs State Hatchery (WA).As a result of communications with hatchery staff, invasive species managers, and on site assessments of hatchery facilities, the document was modified and enhanced. Additional resources were added to keep it up to date. The result is a more simplified tool that can lead hatchery or management personnel through the process of risk assessment and provide an introduction to the risk management and communication process.In addition to the typical HACCP processes, this tool adds steps to rate and consider uncertainty and the weight of evidence regarding options and monitoring results . Uncertainty of outcome exists in most tools that can be used to control or prevent NZMS or other invasive mollusks from infesting an area. In additional this document emphasizes that specific control tools and plans must be tailored to each specific setting to consider the economic, environmental and social influences. From the testing and evaluation process, there was a strong recognition that a number of control and prevention tools previously suggested and reported in the literature from laboratory and small scale trials may not be compatible with regional and national regulations, economic constraints, social or cultural constraints, engineering or water chemistry characteristics of each facility.The options for control are summarized in the second document, Review of Control Measures for Hatcheries Infested with NZMS (Appendix A) that provides sources for additional resources and specific tools, and guidance regarding the feasibility and success of each approach. This tool also emphasizes that management plans need to be adaptive and incorporate oversight from professionals familiar with measuring risks of fish diseases, and treatments (e.g. the fish health practitioners and water quality and effluent management teams). Finally, with such a team, the adaptive management approach must be ongoing, and become a regular component of hatchery operations.Although it was the intent that this two part document would be included as part of the revised National Management and Control Plan for the NZMS proposed by the U.S. Fish and Wildlife Service (USFWS) and others, it is provided as a stand-alone document.

Environmental enrichment in steelhead (Oncorhynchus mykiss) hatcheries: Field evaluation of aggression, foraging, and territoriality in natural and hatchery fry

USGS Publications Warehouse

Tatara, C.P.; Riley, S.C.; Scheurer, J.A.

2008-01-01

Reforms for salmonid hatcheries include production of hatchery fish with behavioral characteristics similar to wild conspecifics. Enrichment of the hatchery environment has been proposed to achieve this goal. Field experiments of steelhead (i.e., sea-run rainbow trout, Oncorhynchus mykiss) fry from a common stock reared under natural (i.e., stream), enriched hatchery, and conventional hatchery conditions indicated no significant differences in the rates of foraging or aggression between rearing treatments. However, the rates of foraging and aggression of natural fry were significantly affected by the type of hatchery fry stocked with them. Natural steelhead fry fed at lower rates and exhibited higher rates of aggression when stocked with steelhead fry raised in enriched hatchery environments. Territory sizes of steelhead fry ranged from 0.015 to 0.801 m2; were significantly, positively related to body length; and were not significantly different between rearing treatments. We conclude that hatchery steelhead fry released into streams establish territories that are proportional to their body length and similar in size to territories of natural steelhead fry. Our results indicate that both conventional and enriched hatchery environments produce natural social behaviors in steelhead released as fry and that fry from enriched hatchery environments may alter the foraging and aggressive behavior of natural, resident steelhead fry. ?? 2008 NRC.

Grande Ronde Endemic Spring Chinook Salmon Supplementation Project; Lostine River Operations and Maintenance 2006 Smolt Acclimation and Adult Return Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zollman, Richard L.; Eschler, Russell; Sealey, Shawn

2009-03-31

The Nez Perce Tribe (NPT), through funding provided by the Bonneville Power Administration (BPA), has implemented a Chinook salmon supplementation program (250,000 smolts) on the Lostine River, a tributary to the Grande Ronde River of Oregon. The Grande Ronde Endemic Spring Chinook Salmon Supplementation project, which involves supplementation of the Upper Grande Ronde River and Catherine Creek in addition to the Lostine River, was established to prevent extirpation and increase the number of threatened Snake River spring/summer Chinook salmon (Oncorhynchus tshawytscha) returning to the Grande Ronde River. This report covers the tenth season (1997-2006) of adult Chinook salmon broodstock collectionmore » in the Lostine River and the eighth season (1999-2006) of acclimation of resulting Lostine River progeny. Production of Lostine River spring Chinook salmon smolts currently occurs at Lookingglass Fish Hatchery (LGH). The Lostine River supplementation program utilizes two strategies to obtain egg source for production of smolts for supplementation: captive broodstock and conventional broodstock. The captive broodstock strategy involves (1) capture of natural juvenile spring Chinook salmon smolts from the Lostine River, (2) rearing those to adult and spawning them, and (3) rearing the resultant progeny for eventual acclimation and release back into the Lostine River. The conventional broodstock strategy involves (1) capture of natural and hatchery origin adults returning to the Lostine River, (2) holding those adults and spawning them, and (3) rearing the resultant progeny for acclimation and release back into the Lostine River. This report focuses on (1) the trapping and collection of adult spring Chinook salmon that return to the Lostine River, which provides the broodstock source for the conventional strategy and (2) the acclimation and release of juvenile spring Chinook salmon produced from the captive broodstock and conventional broodstock strategies In 2006, acclimation of Lostine River spring Chinook salmon smolts occurred from February 27, 2006 through to April 10, 2006 and a total of 240,568 smolts were acclimated and released. These smolts were produced from the brood year (BY) 2004 egg source and included captive brood (40,982) and conventional (199,586) origin smolts that were all progeny of Lostine River spring Chinook salmon. Operation of the Lostine River adult monitoring and collection facility in 2006 began May 15th, the first Chinook was captured on June 14, 2006 and the last Chinook was captured on September 27, 2006. The weir and trap were removed on October 1, 2006. A total of 534 adult Chinook, including jacks, were captured during the season. The composition of the run included 205 natural origin fish and 329 hatchery supplementation fish. There were no identified 'stray' hatchery fish from other programs trapped. Of the fish captured, 33 natural and 120 hatchery supplementation adults were retained for broodstock and transported to LGH for holding and spawning and 397 adult Chinook were passed or transported above the weir to spawn naturally. In 2006, no hatchery origin adult Chinook were transported and out planted in the Wallowa River and Bear Creek to spawn in under seeded habitat. In order to meet egg take goals for the conventional portion of the program, a determination was made that approximately 147 adults were needed for broodstock. As a result 16 (8 males and 8 females) of the 153 fish collected for broodstock were returned to the Lostine River to spawn naturally. Females that were spawned and provided the brood source were made up of 12 natural females and 45 supplementation females. One of these females tested positive for high levels of Bacterial Kidney Disease and consequently this females eggs were destroyed. The remaining females produced a total of 241,372 eggs at fertilization. Eye-up was 85.47% which yielded a total of 206,309 conventional program eyed eggs. The fecundity averaged 4,162 eggs per female. The brood year 2006 eggs will be incubated and reared at Lookingglass Hatchery until they are smolts in the spring of 2008. Captive brood program eggs/fish will be added to the conventional program eggs to make up the entire juvenile release for the Lostine River program in 2008.« less

Grande Ronde Endemic Spring Chinook Salmon Supplementation Project; Lostine River Operations and Maintenance 2007 Smolt Acclimation and Adult Return Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zollman, Richard L.; Eschler, Russell; Sealey, Shawn

2009-03-31

The Nez Perce Tribe (NPT), through funding provided by the Bonneville Power Administration (BPA), has implemented a Chinook salmon supplementation program (250,000 smolts) on the Lostine River, a tributary to the Grande Ronde River of Oregon. The Grande Ronde Endemic Spring Chinook Salmon Supplementation project, which involves supplementation of the Upper Grande Ronde River and Catherine Creek in addition to the Lostine River, was established to prevent extirpation and increase the number of threatened Snake River spring/summer Chinook salmon (Oncorhynchus tshawytscha) returning to the Grande Ronde River. This report covers the eleventh season (1997-2007) of adult Chinook salmon broodstock collectionmore » in the Lostine River and the ninth season (1999-2007) of acclimation of resulting Lostine River progeny. Production of Lostine River spring Chinook salmon smolts currently occurs at Lookingglass Fish Hatchery (LGH). The Lostine River supplementation program utilizes two strategies to obtain egg source for production of smolts for supplementation: captive broodstock and conventional broodstock. The captive broodstock strategy involves (1) capture of natural juvenile spring Chinook salmon smolts from the Lostine River, (2) rearing those to adult and spawning them, and (3) rearing the resultant progeny for eventual acclimation and release back into the Lostine River. The conventional broodstock strategy involves (1) capture of natural and hatchery origin adults returning to the Lostine River, (2) holding those adults and spawning them, and (3) rearing the resultant progeny for acclimation and release back into the Lostine River. This report focuses on (1) the trapping and collection of adult spring Chinook salmon that return to the Lostine River, which provides the broodstock source for the conventional strategy and (2) the acclimation and release of juvenile spring Chinook salmon produced from the captive broodstock and conventional broodstock strategies In 2007, acclimation of Lostine River spring Chinook salmon smolts occurred from 3/5/07 through to 4/17/07 and a total of 230,010 smolts were acclimated and released. These smolts were produced from the brood year (BY) 2005 egg source and included captive brood (24,604) and conventional (205,406) origin smolts that were all progeny of Lostine River spring Chinook salmon. Operation of the Lostine River adult monitoring and collection facility in 2007 began May 14th. The first Chinook was captured on June 2, 2007 and the last Chinook was captured on September 25, 2007. The weir and trap were removed on October 1, 2007. A total of 637 adult Chinook, including jacks, were captured during the season. The composition of the run included 240 natural origin fish and 397 hatchery supplementation fish. There were no identified 'stray' hatchery fish from other programs trapped. Of the fish captured, 41 natural and 81 hatchery supplementation adults were retained for broodstock and transported to LGH for holding and spawning, 403 adult Chinook were passed or transported above the weir to spawn naturally, and only hatchery origin jack Chinook were transported and outplanted in the Wallowa River and Bear Creek in underseeded habitat. Of the 122 adult fish retained for broodstock, 20 natural females and 40 supplementation females were represented in spawning. The eggs from these females produced a total of 267,350 eggs at fertilization. Eye-up was 86.73% which yielded a total of 231,882 conventional program eyed eggs. The fecundity averaged 4,456 eggs per female. These eggs will be incubated and reared at Lookingglass Hatchery until they are smolts in the spring of 2009. Captive brood program eggs/fish will be added to the conventional program eggs to make up the entire juvenile release for the Lostine River program in 2009. Due to the success of the 2007 egg collection, the number of fish produced exceeded program needs and facility capabilities. As a result, there are plans to outplant fry in 2008 and parr in early 2009 to underseeded habitat in the Wallowa River.« less

78 FR 18967 - Walla Walla Basin Spring Chinook Hatchery Program

Federal Register 2010, 2011, 2012, 2013, 2014

2013-03-28

... Program AGENCY: Bonneville Power Administration (BPA), Department of Energy (DOE). ACTION: Notice of... assessment. SUMMARY: In accordance with the National Environmental Policy Act (NEPA), BPA intends to prepare... of Intent, BPA is initiating the public scoping process for the EIS. BPA is requesting comments about...

Development of an Applied Fisheries Science Program for Native Alaskans at Sheldon Jackson College. Sixth Progress Report.

ERIC Educational Resources Information Center

Seifert, Mel

The sixth semi-annual report of the Sheldon Jackson College Aquaculture Program covers the period January 1 through June 30, 1977, and summarizes the last half of the second year of operation of the educational program and the entire year for the hatchery. The educational component of the program is described in terms of the academic program,…

Hood River and Pelton Ladder Evaluation Studies : Annual Report 1994.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Olsen, Erik A.; French, Rod A.; Ritchey, Alan D.

1995-09-01

In 1992, the Northwest Power Planning Council approved the Hood River and Pelton ladder master plans within the framework of the Columbia River Basin Fish and Wildlife Program. The master plans define an approach for implementing a hatchery supplementation program in the Hood River subbasin. The hatchery program as defined in the master plans is called the Hood River Hatchery Production Program (HRPP). The HRPP will be phased in over several years and will be jointly implemented by the Oregon Department of Fish and Wildlife (ODFW) and the Confederated Tribes of the Warm Springs (CTWS) Reservation. In December 1991, amore » monitoring and evaluation program was implemented in the Hood River subbasin to collect life history and production information on stocks of anadromous salmonids returning to the Hood River subbasin. The program was implemented to provide the baseline information needed to: (1) evaluate various management options for implementing the HRPP and (2) determine any post-project impacts the HRPP has on indigenous populations of resident fish. Information collected during the 1992-94 fiscal years will also be used to prepare an environmental impact statement (EIS) evaluating the program`s impact on the human environment. To begin construction on project facilities, it was proposed that the HRPP be implemented in two phases. Phase I would include work that would fall under a {open_quotes}categorical exclusion{close_quotes} from NEPA, and Phase II would include work requiring an EIS prior to implementation. This report summarizes the life history and escapement data collected in the Hood River subbasin and the status work of implemented under Phase I of the HR Life history and escapement data will be used to: (1) test the assumptions on which harvest and escapement goals for the Hood River and Pelton ladder master plans are based and (2) develop biologically based management recommendations for implementing the HRPP.« less

Lake Roosevelt Fisheries Evaluation Program : Lake Whatcom Kokanee Salmon (Oncorhynchus nerka kennerlyi) : Investigations in Lake Roosevelt Annual Report 1999-2000.

DOE Office of Scientific and Technical Information (OSTI.GOV)

McLellan, Holly J.; Scholz, Allan T.; McLellan, Jason G.

2001-07-01

Lake Whatcom stock kokanee have been planted in Lake Roosevelt since 1988 with the primary goal of establishing a self-sustaining fishery. Returns of hatchery kokanee to egg collection facilities and recruitment to the creel have been minimal. Therefore, four experiments were conducted to determine the most appropriate release strategy that would increase kokanee returns. The first experiment compared morpholine and non-morpholine imprinted kokanee return rates, the second experiment compared early and middle run Whatcom kokanee, the third experiment compared early and late release dates, and the fourth experiment compared three net pen release strategies: Sherman Creek hatchery vs. Sherman Creekmore » net pens, Colville River net pens vs. Sherman Creek net pens, and upper vs. lower reservoir net pen releases. Each experiment was tested in three ways: (1) returns to Sherman Creek, (2) returns to other tributaries throughout the reservoir, and (3) returns to the creel. Chi-square analysis of hatchery and tributary returns indicated no significant difference between morpholine imprinted and non-imprinted fish, early run fish outperformed middle run fish, early release date outperformed late release fish, and the hatchery outperformed all net pen releases. Hatchery kokanee harvest was estimated at 3,323 fish, which was 33% of the total harvest. Return rates (1998 = 0.52%) of Whatcom kokanee were low indicating an overall low performance that could be caused by high entrainment, predation, and precocity. A kokanee stock native to the upper Columbia, as opposed to the coastal Whatcom stock, may perform better in Lake Roosevelt.« less

Effects of hatchery rearing on Florida largemouth bass Micropterus floridanus resource allocation and performance under semi-natural conditions.

PubMed

Garlock, T M; Monk, C T; Lorenzen, K; Matthews, M D; St Mary, C M

2014-12-01

This study examined the growth, activity, metabolism and post-release survival of three groups of Florida largemouth bass Micropterus floridanus: wild-caught fish, hatchery fish reared according to standard practice (hatchery standard) and hatchery fish reared under reduced and unpredictable food provisioning (hatchery manipulated). Hatchery-standard fish differed from wild-caught fish in all measured variables, including survival in semi-natural ponds. Hatchery-standard and hatchery-manipulated fish showed higher activity levels, faster growth and lower standard metabolic rates than wild-caught fish in the hatchery. Fish reared under the manipulated feeding regime showed increased metabolic rates and increased post-release growth, similar to wild-caught fish. Their activity levels and post-release survival, however, remained similar to those of hatchery-standard fish. Activity was negatively correlated with post-release survival and failure of the feed manipulation to reduce activity may have contributed to its failure to improve post-release survival. Activity and post-release survival may be influenced by characteristics of the rearing environment other than the feeding regime, such as stock density or water flow rates. © 2014 The Fisheries Society of the British Isles.

Spring Emigration of Natural and Hatchery Chinook Salmon and Steelhead Trout Smolts from the Imnaha River, Oregon; 1997 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Blenden, Michael L.; Veach, Eric R.; Kucera, Paul A.

1998-10-01

For the fourth consecutive year, the Nez Perce Tribe, in conjunction with the Fish Passage Center, participated in the smolt monitoring program in the Imnaha River. A screw trap was used to collect emigrating natural and hatchery chinook salmon (Uncorhynchus tshawytscha) and steelhead trout (Oncorhynchus mykiss) smolts from February 25 to June 27, 1997. A total of 270 natural chinook salmon, 10,616 hatchery chinook salmon, 864 natural steelhead trout (and 13 natural steelhead parr), and 7,345 hatchery steelhead trout smolts were captured during emigration studies on the Imnaha River. Mortality associated with trapping, handling and tagging was low: 0.37% formore » natural chinook, 0.11% for hatchery chinook, 0.11% for natural steelhead, and 0.39% for hatchery steelhead trout smolts. Natural chinook salmon smolts emigrated from the Imnaha River from February 25 to June 10 and had a mean length of 108 mm, average weight of 13 g, and mean condition factor of 1.02. The peak period of natural chinook smolt emigration, based on number of fish collected, occurred between March 25 and April 30. Hatchery reared chinook salmon smolts were collected from April 9 to May 9, with 99% of the smolts being caught within 10 days after release. Hatchery chinook smolts mean length, weight, and condition factor were 131 mm, 25.4 g, and 1.12, respectively. Emigration of natural steelhead smolts in the Imnaha River occurred between March 14 and June 25. Peak emigration occurred from May 1 to May 15. Natural steelhead smolts averaged 175 mm in fork length, 55.8 g in weight and had a mean condition factor of 1 .OO. Hatchery steelhead smolts emigrated from the Imnaha River between April 15 and June 27. Hatchery steelhead smolts averaged 210 mm in fork length, 88 g in weight and had a mean condition factor of 0.93. Spring runoff water conditions in 1997 provided above average flows for emigrating anadromous salmonid smolts. Imnaha River mean daily discharge during spring emigration ranged from 7.4 cms (260 cfs) on March 9 to 96.6 cms (3,410 cfs) on April 20 at USGS gauge 13292000, Imnaha, OR. Snake River discharge measured at the Anatone gauge station, ranged from 61.1 to 152 kcfs from April 15 to May 18. River discharge at LGR ranged from 79.6 kcfs on March 6 to 225.3 kcfs on May 18. Flows at LGR were generally greater than 100 kcfs during most of the spring runoff period, and discharge exceeded 120 kcfs from March 20-31 and April 19 to June 24. The water spill period at LGR occurred continuously from April 10 to June 29 with peak spill of 101.9 kcfs occurring on May 17.« less

Effects of Hatchery Rearing on the Structure and Function of Salmonid Mechanosensory Systems.

PubMed

Brown, Andrew D; Sisneros, Joseph A; Jurasin, Tyler; Coffin, Allison B

2016-01-01

This paper reviews recent studies on the effects of hatchery rearing on the auditory and lateral line systems of salmonid fishes. Major conclusions are that (1) hatchery-reared juveniles exhibit abnormal lateral line morphology (relative to wild-origin conspecifics), suggesting that the hatchery environment affects lateral line structure, perhaps due to differences in the hydrodynamic conditions of hatcheries versus natural rearing environments, and (2) hatchery-reared salmonids have a high proportion of abnormal otoliths, a condition associated with reduced auditory sensitivity and suggestive of inner ear dysfunction.

Monitoring and Evaluation of Smolt Migration in the Columbia Basin : Volume XV : Evaluation of the 2007 Predictions of the Run-Timing of Wild and Hatchery-Reared Salmon and Steelhead Smolts to Rock Island, Lower Granite, McNary, John Day, and Bonneville Dams using Program RealTime.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Griswold, Jim; Townsend, Richard L.; Skalski, John R.

Program RealTime provided monitoring and forecasting of the 2007 inseason outmigrations via the internet for 26 PIT-tagged stocks of wild ESU Chinook salmon and steelhead to Lower Granite and/or McNary dams, one PIT-tagged hatchery-reared ESU of sockeye salmon to Lower Granite Dam, one PIT-tagged wild stock of sockeye salmon to McNary Dam, and 20 passage-indexed runs-at-large, five each to Rock Island, McNary, John Day, and Bonneville dams. Nineteen stocks are of wild yearling Chinook salmon which were captured, PIT-tagged, and released at sites above Lower Granite Dam in 2007 and have at least one year's historical migration data previous tomore » the 2007 migration. These stocks originate in 19 tributaries of the Salmon, Grande Ronde and Clearwater Rivers, all tributaries to the Snake River, and are subsequently detected through tag identification and monitored at Lower Granite Dam. Seven wild PIT-tagged runs-at-large of Snake or Upper Columbia River ESU salmon and steelhead were monitored at McNary Dam. Three wild PIT-tagged runs-at-large were monitored at Lower Granite Dam, consisting of the yearling and subyearling Chinook salmon and the steelhead runs. The hatchery-reared PIT-tagged sockeye salmon stock from Redfish Lake was monitored outmigrating through Lower Granite Dam. Passage-indexed stocks (stocks monitored by FPC passage indices) included combined wild and hatchery runs-at-large of subyearling and yearling Chinook, coho, and sockeye salmon, and steelhead forecasted to Rock Island, McNary, John Day, and Bonneville dams.« less

Monitoring and Evaluation of Smolt Migration in the Columbia Basin, Volume XIV; Evaluation of 2006 Prediction of the Run-Timing of Wild and Hatchery-Reared Salmon and Steelhead at Rock Island, Lower Granite, McNary, John Day and Bonneville Dams using Program Real Time, Technical Report 2006.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Griswold, Jim

Program RealTime provided monitoring and forecasting of the 2006 inseason outmigrations via the internet for 32 PIT-tagged stocks of wild ESU chinook salmon and steelhead to Lower Granite and/or McNary dams, one PIT-tagged hatchery-reared ESU of sockeye salmon to Lower Granite Dam, and 20 passage-indexed runs-at-large, five each to Rock Island, McNary, John Day, and Bonneville Dams. Twenty-four stocks are of wild yearling chinook salmon which were captured, PIT-tagged, and released at sites above Lower Granite Dam in 2006, and have at least one year's historical migration data previous to the 2006 migration. These stocks originate in drainages of themore » Salmon, Grande Ronde and Clearwater Rivers, all tributaries to the Snake River, and are subsequently detected through the tag identification and monitored at Lower Granite Dam. In addition, seven wild PIT-tagged runs-at-large of Snake or Upper Columbia River ESU salmon and steelhead were monitored at McNary Dam. Three wild PIT-tagged runs-at-large were monitored at Lower Granite Dam, consisting of the yearling and subyearling chinook salmon and the steelhead trout runs. The hatchery-reared PIT-tagged sockeye salmon stock from Redfish Lake was monitored outmigrating through Lower Granite Dam. Passage-indexed stocks (stocks monitored by FPC passage indices) included combined wild and hatchery runs-at-large of subyearling and yearling chinook, coho, and sockeye salmon, and steelhead trout forecasted to Rock Island, McNary, John Day, and Bonneville Dams.« less

Broodstock History Strongly Influences Natural Spawning Success in Hatchery Steelhead (Oncorhynchus mykiss).

PubMed

Ford, Michael J; Murdoch, Andrew R; Hughes, Michael S; Seamons, Todd R; LaHood, Eric S

2016-01-01

We used genetic parentage analysis of 6200 potential parents and 5497 juvenile offspring to evaluate the relative reproductive success of hatchery and natural steelhead (Onchorhynchus mykiss) when spawning in the wild between 2008 and 2011 in the Wenatchee River, Washington. Hatchery fish originating from two prior generation hatchery parents had <20% of the reproductive success of natural origin spawners. In contrast, hatchery females originating from a cross between two natural origin parents of the prior generation had equivalent or better reproductive success than natural origin females. Males originating from such a cross had reproductive success of 26-93% that of natural males. The reproductive success of hatchery females and males from crosses consisting of one natural origin fish and one hatchery origin fish was 24-54% that of natural fish. The strong influence of hatchery broodstock origin on reproductive success confirms similar results from a previous study of a different population of the same species and suggests a genetic basis for the low reproductive success of hatchery steelhead, although environmental factors cannot be entirely ruled out. In addition to broodstock origin, fish size, return time, age, and spawning location were significant predictors of reproductive success. Our results indicate that incorporating natural fish into hatchery broodstock is clearly beneficial for improving subsequent natural spawning success, even in a population that has a decades-long history of hatchery releases, as is the case in the Wenatchee River.

Genetic diversity of wild and hatchery lake trout populations: Relevance for management and restoration in the Great Lakes

USGS Publications Warehouse

Page, K.S.; Scribner, K.T.; Burnham-Curtis, M.

2004-01-01

The biological diversity of lake trout Salvelinus namaycush in the upper Great Lakes was historically high, consisting of many recognizable morphological types and discrete spawning populations. During the 1950s and 1960s, lake trout populations were extirpated from much of the Great Lakes primarily as a result of overfishing and predation by the parasitic sea lamprey Petromyzon marinus. Investigations of how genetic diversity is partitioned among remnant wild lake trout populations and hatchery broodstocks have been advocated to guide lake trout management and conservation planning. Using microsatellite genetic markers, we estimated measures of genetic diversity and the apportionment of genetic variance among 6 hatchery broodstocks and 10 wild populations representing three morphotypes (lean, humper, and siscowet). Analyses revealed that different hatchery broodstocks and wild populations contributed disproportionally to the total levels of genetic diversity. The genetic affinities of hatchery lake trout reflected the lake basins of origin of the wild source populations. The variance in allele frequency over all sampled extant wild populations was apportioned primarily on the basis of morphotype (??MT = 0.029) and secondarily among geographically dispersed populations within each morphotype (??ST = 0.024). The findings suggest that the genetic divergence reflected in recognized morphotypes and the associated ecological and physiological specialization occurred prior to the partitioning of large proglacial lakes into the Great Lakes or as a consequence of higher contemporary levels of gene flow within than among morphotypes. Information on the relative contributions of different broodstocks to total gene diversity within the regional hatchery program can be used to prioritize the broodstocks to be retained and to guide future stocking strategies. The findings highlight the importance of ecological and phenotypic diversity in Great Lakes fish communities and emphasize that the management of wild remnant lake trout populations and the restoration of extirpated populations should recognize and make greater use of the genetic diversity that still exists.

Implementation of genetic conservation practices in a muskellunge propagation and stocking program

USGS Publications Warehouse

Jennings, Martin J.; Sloss, Brian L.; Hatzenbeler, Gene R.; Kampa, Jeffrey M.; Simonson, Timothy D.; Avelallemant, Steven P.; Lindenberger, Gary A.; Underwood, Bruce D.

2010-01-01

Conservation of genetic resources is a challenging issue for agencies managing popular sport fishes. To address the ongoing potential for genetic risks, we developed a comprehensive set of recommendations to conserve genetic diversity of muskellunge (Esox masquinongy) in Wisconsin, and evaluated the extent to which the recommendations can be implemented. Although some details are specific to Wisconsin's muskellunge propagation program, many of the practical issues affecting implementation are applicable to other species and production systems. We developed guidelines to restrict future broodstock collection operations to lakes with natural reproduction and to develop a set of brood lakes to use on a rotational basis within regional stock boundaries, but implementation will require considering lakes with variable stocking histories. Maintaining an effective population size sufficient to minimize the risk of losing alleles requires limiting broodstock collection to large lakes. Recommendations to better approximate the temporal distribution of spawning in hatchery operations and randomize selection of brood fish are feasible. Guidelines to modify rearing and distribution procedures face some logistic constraints. An evaluation of genetic diversity of hatchery-produced fish during 2008 demonstrated variable success representing genetic variation of the source population. Continued evaluation of hatchery operations will optimize operational efficiency while moving toward genetic conservation goals.

Implementation of genetic conservation practices in a muskellunge propagation and stocking program

USGS Publications Warehouse

Jennings, Martin J.; Sloss, Brian L.; Hatzenbeler, Gene R.; Kampa, Jeffrey M.; Simonson, Timothy D.; Avelallemant, Steven P.; Lindenberger, Gary A.; Underwood, Bruce D.

2010-01-01

Conservation of genetic resources is a challenging issue for agencies managing popular sport fishes. To address the ongoing potential for genetic risks, we developed a comprehensive set of recommendations to conserve genetic diversity of muskellunge (Esox masquinongy) in Wisconsin, and evaluated the extent to which the recommendations can be implemented. Although some details are specific to Wisconsin's muskellunge propagation program, many of the practical issues affecting implementation are applicable to other species and production systems. We developed guidelines to restrict future brood stock collection operations to lakes with natural reproduction and to develop a set of brood lakes to use on a rotational basis within regional stock boundaries, but implementation will require considering lakes with variable stocking histories. Maintaining an effective population size sufficient to minimize the risk of losing alleles requires limiting brood stock collection to large lakes. Recommendations to better approximate the temporal distribution of spawning in hatchery operations and randomize selection of brood fish are feasible. Guidelines to modify rearing and distribution procedures face some logistic constraints. An evaluation of genetic diversity of hatchery-produced fish during 2008 demonstrated variable success representing genetic variation of the source population. Continued evaluation of hatchery operations will optimize operational efficiency while moving toward genetic conservation goals.

Genetic structure and diversity in natural and stocked populations of the mandarin fish (Siniperca chuatsi) in China.

PubMed

Yang, M; Tian, C; Liang, X-F; Zheng, H; Zhao, C; Zhu, K

2015-05-18

The Chinese perch, or mandarin fish (Siniperca chuatsi), is a freshwater fish that is endemic to East Asia. In this study, we investigated the genetic diversity and structure of nine natural mandarin fish populations (from the Yangtze River and Amur River basins) and six hatchery stocks (from central and south China) using microsatellite markers. The results show that the genetic diversity of the Yangtze River populations was high and stable, and genetic differences between them were not significant. In contrast, a low level of genetic diversity and strong genetic structure were detected in the Amur River population. These results suggest that the Yangtze River region and the Amur River region should be treated as two separate units in conservation programs. The hatchery stocks exhibited low genetic diversity and significant genetic differentiation compared to natural populations; this may result in a significant impact on the species if escape events occur. Therefore, a scientific aquaculture management strategy is necessary for the long-term development of hatcheries.

A test for the relative strength of maternal and stock effects in spring Chinook salmon (Oncorhynchus tshawytscha) from two different hatcheries (Study site: Warm Springs Hatchery; Stocks: Warm Springs Hatchery and Carson Hatchery; Year class: 1993): Chapter 10

USGS Publications Warehouse

Wetzel, Lisa A.; Rubin, Stephen P.; Reisenbichler, Reginald R.; Stenberg, Karl D.; Rubin, Stephen P.; Reisenbichler, Reginald R.; Wetzel, Lisa A.; Hayes, Michael C.

2012-01-01

An experiment was undertaken to determine the relative strength of maternal and stock effects in Chinook salmon (Oncorhynchus tshawytscha) reared in a common environment, as a companion study to our investigation of hatchery and wild Chinook salmon. Pure-strain and reciprocal crosses were made between two hatchery stocks (Carson and Warm Springs National Fish Hatcheries). The offspring were reared together in one of the hatcheries to the smolt stage, and then were transferred to a seawater rearing facility (USGS-Marrowstone Field Station). Differences in survival, growth and disease prevalence were assessed. Fish with Carson parentage grew to greater size at the hatchery and in seawater than the pure-strain Warm Springs fish, but showed higher mortality at introduction to seawater. The analyses of maternal and stock effects were inconclusive, but the theoretical responses to different combinations of maternal and stock effects may be useful in interpreting stock comparison studies.

Development of an Applied Fisheries Science Program for Native Alaskans at Sheldon Jackson College (Sitka, Alaska). Third Progress Report, 1 January 1976.

ERIC Educational Resources Information Center

Seifert, Mel

Covering the period between July 1 to December 31, 1976, this third semi-annual report on the Applied Fishery Science Program operative at Sheldon Jackson College in Sitka, Alaska deals primarily with the first quarter of hatchery and educational program operation. Specifically, this report addresses the following: Program Objectives; Advisory…

Monitoring and Evaluation of Smolt Migration in the Columbia River Basin : Volume VI : Evaluation of the 2000 Predictions of the Run-Timing of Wild Migrant Chinook Salmon and Steelhead Trout, and Hatchery Sockeye Salmon in the Snake River Basin, and Combined Wild Hatchery Salminids Migrating to Rock Island and McNary Dams using Program RealTime.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Burgess, Caitlin

1998-07-01

Program RealTime provided tracking and forecasting of the 2000 in season outmigration via the internet for stocks of wild PIT-tagged spring/summer chinook salmon. These stocks were ESUs from nineteen release sites above Lower Granite dam, including Bear Valley Creek, Big Creek, Camas Creek (new), Cape Horn Creek, Catherine Creek, Elk Creek, Herd Creek, Imnaha River, Johnson Creek (new), Lake Creek, Loon Creek, Lostine River, Marsh Creek, Minam River, East Fork Salmon River (new), South Fork Salmon River, Secesh River, Sulfur Creek and Valley Creek. Forecasts were also provided for two stocks of hatchery-reared PIT-tagged summer-run sockeye salmon, from Redfish Lakemore » and Alturas Lake (new); for a subpopulation of the PIT-tagged wild Snake River fall subyearling chinook salmon; for all wild Snake River PIT-tagged spring/summer yearling chinook salmon (new) and steelhead trout (new)detected at Lower Granite Dam during the 2000 outmigration. The 2000 RealTime project began making forecasts for combined wild- and hatchery-reared runs-at-large of subyearling and yearling chinook, coho, and sockeye salmon, and steelhead trout migrating to Rock Island and McNary Dams on the mid-Columbia River and the mainstem Columbia River. Due to the new (in 1999-2000) Snake River basin hatchery protocol of releasing unmarked hatchery-reared fish, the RealTime forecasting project no longer makes run-timing forecasts for wild Snake River runs-at-large using FPC passage indices, as it has done for the previous three years (1997-1999). The season-wide measure of Program RealTime performance, the mean absolute difference (MAD) between in-season predictions and true (observed) passage percentiles, improved relative to previous years for nearly all stocks. The average season-wide MAD of all (nineteen) spring/summer yearling chinook salmon ESUs dropped from 5.7% in 1999 to 4.5% in 2000. The 2000 MAD for the hatchery-reared Redfish Lake sockeye salmon ESU was the lowest recorded, at 6.0%, down from 6.7% in 1999. The MAD for the PIT-tagged ESU of wild Snake River fall sub-yearling chinook salmon, after its second season of run-timing forecasting, was 4.7% in 2000 compared to 5.5% in 1999. The high accuracy of season-wide performance in 2000 was largely due to exceptional Program RealTime performance in the last half of the season. Passage predictions from fifteen of the sixteen spring/summer yearling chinook salmon ESUs available for comparison improved in 2000 compared to 1999. The last-half average MAD over all the yearling chinook salmon ESUs was 4.3% in 2000, compared to 6.5% in 1999. Program RealTime 2000 first-half forecasting performance was slightly worse than that of 1999 (MAD = 4.5%), but still comparable to previous years with a MAD equal to 5.1%. Three yearling chinook ESUs showed moderately large (> 10%) MADs. These stocks had larger-than-average recapture percentages in 2000, producing over-predictions early in the season, in a dynamic reminiscent of migration year 1998 (Burgess et al., 1999). The passage distribution of the new stock of hatchery-reared sockeye salmon from Alturas Lake was well-predicted by Program RealTime, based on only two years of historical data (whole-season MAD = 4.3%). The two new run-of-the-river PIT-tagged stocks of wild yearling chinook salmon and steelhead trout were predicted with very good accuracy (whole-season MADs were 4.8% for steelhead trout and 1.7% for yearling chinook salmon), particularly during the last half of the outmigration. First-half steelhead predictions were among the season's worst (MAD = 10.8%), with over-predictions attributable to the largest passage on record of wild PIT-tagged steelhead trout to Lower Granite Dam. The results of RealTime predictions of passage percentiles of combined wild and hatchery-reared salmonids to Rock Island and McNary were mixed. Some of these passage-indexed runs-at-large were predicted with exceptional accuracy (whole-season MADs for coho salmon outmigrating to Rock Island Dam and McNary Dam were, respectively, 0.58% and 1.24%; for yearling chinook to McNary, 0.59%) while others were not forecast well at all (first-half MADs of sockeye salmon migrating to Rock Island and McNary Dams, respectively, were 19.25% and 12.78%). The worst performances for these mid- and mainstem-Columbia River runs-at-large were probably due to large hatchery release disturbing the smoothly accumulating percentages of normal fish passage. The RealTime project used a stock-specific method of upwardly adjusting PIT-tagged smolt counts at Lower Granite Dam. For chinook and sockeye salmon, the project continued using the 1999 formulation for spill-adjustment. For the new stock of wild PIT-tagged steelhead trout, a formula derived for steelhead trout only was used.« less

Broodstock History Strongly Influences Natural Spawning Success in Hatchery Steelhead (Oncorhynchus mykiss)

PubMed Central

Murdoch, Andrew R.; Hughes, Michael S.; Seamons, Todd R.; LaHood, Eric S.

2016-01-01

We used genetic parentage analysis of 6200 potential parents and 5497 juvenile offspring to evaluate the relative reproductive success of hatchery and natural steelhead (Onchorhynchus mykiss) when spawning in the wild between 2008 and 2011 in the Wenatchee River, Washington. Hatchery fish originating from two prior generation hatchery parents had <20% of the reproductive success of natural origin spawners. In contrast, hatchery females originating from a cross between two natural origin parents of the prior generation had equivalent or better reproductive success than natural origin females. Males originating from such a cross had reproductive success of 26–93% that of natural males. The reproductive success of hatchery females and males from crosses consisting of one natural origin fish and one hatchery origin fish was 24–54% that of natural fish. The strong influence of hatchery broodstock origin on reproductive success confirms similar results from a previous study of a different population of the same species and suggests a genetic basis for the low reproductive success of hatchery steelhead, although environmental factors cannot be entirely ruled out. In addition to broodstock origin, fish size, return time, age, and spawning location were significant predictors of reproductive success. Our results indicate that incorporating natural fish into hatchery broodstock is clearly beneficial for improving subsequent natural spawning success, even in a population that has a decades-long history of hatchery releases, as is the case in the Wenatchee River. PMID:27737000

An evaluation of the effects of conservation and fishery enhancement hatcheries on wild populations of salmon.

PubMed

Naish, Kerry A; Taylor, Joseph E; Levin, Phillip S; Quinn, Thomas P; Winton, James R; Huppert, Daniel; Hilborn, Ray

2007-01-01

The historical, political and scientific aspects of salmon hatchery programmes designed to enhance fishery production, or to recover endangered populations, are reviewed. We start by pointing out that the establishment of hatcheries has been a political response to societal demands for harvest and conservation; given this social context, we then critically examined the levels of activity, the biological risks, and the economic analysis associated with salmon hatchery programmes. A rigorous analysis of the impacts of hatchery programmes was hindered by the lack of standardized data on release sizes and survival rates at all ecological scales, and since hatchery programme objectives are rarely defined, it was also difficult to measure their effectiveness at meeting release objectives. Debates on the genetic effects of hatchery programmes on wild fish have been dominated by whether correct management practices can reduce negative outcomes, but we noted that there has been an absence of programmatic research approaches addressing this important issue. Competitive interactions between hatchery and wild fish were observed to be complex, but studies researching approaches to reduce these interactions at all ecological scales during the entire salmon life history have been rare, and thus are not typically considered in hatchery management. Harvesting of salmon released from fishery enhancement hatcheries likely impacts vulnerable wild populations; managers have responded to this problem by mass marking hatchery fish, so that fishing effort can be directed towards hatchery populations. However, we noted that the effectiveness of this approach is dependant on accurate marking and production of hatchery fish with high survival rates, and it is not yet clear whether selective fishing will prevent overharvest of wild populations. Finally, research demonstrating disease transmission from hatchery fish to wild populations was observed to be equivocal; evidence in this area has been constrained by the lack of effective approaches to studying the fate of pathogens in the wild. We then reviewed several approaches to studying the economic consequences of hatchery activities intended to inform the social decisions surrounding programmes, but recognized that placing monetary value on conservation efforts or on hatcheries that mitigate cultural groups' loss of historical harvest opportunities may complicate these analyses. We noted that economic issues have rarely been included in decision making on hatchery programmes. We end by identifying existing major knowledge gaps, which, if filled, could contribute towards a fuller understanding of the role that hatchery programmes could play in meeting divergent goals. However, we also recognized that many management recommendations arising from such research may involve trade-offs between different risks, and that decisions about these trade-offs must occur within a social context. Hatcheries have played an important role in sustaining some highly endangered populations, and it is possible that reform of practices will lead to an increase in the number of successful programmes. However, a serious appraisal of the role of hatcheries in meeting broader needs is urgently warranted and should take place at the scientific, but more effectively, at the societal level.

An evaluation of the effects of conservation and fishery enhancement hatcheries on wild populations of salmon

USGS Publications Warehouse

Naish, Kerry A.; Taylor, Joseph E.; Levin, Phillip S.; Quinn, Thomas P.; Winton, James R.; Huppert , Daniel; Hilborn , Ray

2007-01-01

The historical, political and scientific aspects of salmon hatchery programmes designed to enhance fishery production, or to recover endangered populations, are reviewed. We start by pointing out that the establishment of hatcheries has been a political response to societal demands for harvest and conservation; given this social context, we then critically examined the levels of activity, the biological risks, and the economic analysis associated with salmon hatchery programmes. A rigorous analysis of the impacts of hatchery programmes was hindered by the lack of standardized data on release sizes and survival rates at all ecological scales, and since hatchery programme objectives are rarely defined, it was also difficult to measure their effectiveness at meeting release objectives. Debates on the genetic effects of hatchery programmes on wild fish have been dominated by whether correct management practices can reduce negative outcomes, but we noted that there has been an absence of programmatic research approaches addressing this important issue. Competitive interactions between hatchery and wild fish were observed to be complex, but studies researching approaches to reduce these interactions at all ecological scales during the entire salmon life history have been rare, and thus are not typically considered in hatchery management. Harvesting of salmon released from fishery enhancement hatcheries likely impacts vulnerable wild populations; managers have responded to this problem by mass marking hatchery fish, so that fishing effort can be directed towards hatchery populations. However, we noted that the effectiveness of this approach is dependant on accurate marking and production of hatchery fish with high survival rates, and it is not yet clear whether selective fishing will prevent overharvest of wild populations. Finally, research demonstrating disease transmission from hatchery fish to wild populations was observed to be equivocal; evidence in this area has been constrained by the lack of effective approaches to studying the fate of pathogens in the wild. We then reviewed several approaches to studying the economic consequences of hatchery activities intended to inform the social decisions surrounding programmes, but recognized that placing monetary value on conservation efforts or on hatcheries that mitigate cultural groups’ loss of historical harvest opportunities may complicate these analyses. We noted that economic issues have rarely been included in decision making on hatchery programmes. We end by identifying existing major knowledge gaps, which, if filled, could contribute towards a fuller understanding of the role that hatchery programmes could play in meeting divergent goals. However, we also recognized that many management recommendations arising from such research may involve trade-offs between different risks, and that decisions about these trade-offs must occur within a social context. Hatcheries have played an important role in sustaining some highly endangered populations, and it is possible that reform of practices will lead to an increase in the number of successful programmes. However, a serious appraisal of the role of hatcheries in meeting broader needs is urgently warranted and should take place at the scientific, but more effectively, at the societal level.

Emigration of Natural and Hatchery Chinook Salmon and Steelhead Smolts from the Imnaha River, Oregon, Progress Report 2000-2002.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cleary, Peter; Kucera, Paul; Blenden, Michael

This report summarizes the emigration studies of the Nez Perce Tribe in the Imnaha River subbasin during the 2001 and 2002 migration years. A migration year for the Imnaha River is defined here as beginning July 31 of the previous year and ending July 30 the following year. The conclusion of the studies at the end of migration year 2002 marked the 11th year of the Nez Perce Tribe's Lower Snake River Emigration Studies. The Nez Perce Tribe has participated in the Fish Passage Center's Smolt Monitoring Program for nine of the 11 years. These studies collect and tag juvenilemore » chinook salmon and steelhead at two locations in the fall, rkm 74 and rkm 7, and at rkm 7 during the spring. Data from captured and tagged fish provide an evaluation of hatchery production and releases strategies, post release survival of hatchery chinook salmon, abundance of natural chinook salmon, and downstream survival and arrival timing of natural and hatchery chinook salmon and steelhead. The hydrologic conditions that migrating fish encountered in 2001 were characterized as a drought and conditions in 2002 were characterized as below average. Hatchery chinook salmon had a mean fork length that was 34 mm greater in 2001 and 35 mm greater in 2002 than the mean fork length of natural chinook smolts. Hatchery steelhead smolt mean fork lengths were 39 mm greater than natural steelhead smolts in 2001 and 44 mm greater than natural steelhead smolt fork lengths in 2002. A significant difference (p < 0.05) between hatchery and natural chinook salmon and steelhead fork lengths has been documented by these emigration studies from 1997 to 2002. Hatchery chinook salmon were volitionally released in 2001 and 2002 and the 90% arrivals for 2001 and 2002 at the lower rkm 7 trap were within the range of past observations of 22 to 38 days observed in 1999 and 2000. We estimated that 93.9% of the 123,014 hatchery chinook salmon released in 2001 survived to the lower trap and 90.2% of the 303,769 hatchery chinook salmon released in 2002 survived to the lower trap. Post release survival estimates for hatchery chinook salmon were within the range of past estimates; 88.4% in 1998 to 100.9% in 1994. An estimated 7,646 to 23,249 (95% C.I.) natural chinook salmon smolts migrated past the lower Imnaha River trap from April 4 to April 22. An additional 6,767 to 14,706 (95% C.I.) natural chinook salmon smolts migrated past the lower Imnaha River trap from April 23 to May 14, 2002. Natural chinook salmon captured and tagged at the upper rkm 74 trap survived to Lower Granite Dam (LGR) at a rate of 28.8% during migration year 2001 and 21.9% during migration year 2002. The survival estimate for fall tagged natural chinook salmon from the lower trap to LGR was 41.9% in 2001 and 33.3% in 2002. Differences between survival from release to LGR for fall tagged natural chinook salmon from the lower trap have been 5.9% to 16.9% higher than for fall tagged natural chinook salmon from the upper trap from 1994 to 2002. Spring PIT tag release groups of natural chinook salmon, hatchery chinook salmon, and hatchery steelhead produced estimates of survival from the trap to LGR within the range of past estimates since 1993. Estimated survival from release to LGR for 2001 and 2002 were as follows: 83.7% and 86.9% for natural chinook salmon, 80.3% and 77.3% for hatchery chinook salmon, 82.7% and 81.8% for natural steelhead, and 82.0% and 83.0% for hatchery steelhead. Estimates of survival for spring tagged fish from the trap to Lower Monumental Dam (LMO) during the drought of 2001 were the lowest estimates of survival from 1998 to 2002 for natural chinook salmon, and from1997 to 2002 for natural and hatchery steelhead. Estimates of migration year 2001 survival from the trap to LMO were as follows: 65.6% - natural chinook salmon, 68.9% - hatchery chinook salmon, 49.7% natural steelhead, and 42.9% - hatchery steelhead. Estimates of migration year 2002 survival from the trap to LMO were as follows: 76.8% - natural chinook salmon, 68.1% - hatchery chinook salmon, 69.9% natural steelhead, and 78.0% - hatchery steelhead. A smolt-to-adult return rate (SAR) index from LGR to LGR was calculated for migrating pre-smolt and smolt natural chinook salmon, that were PIT tagged in the fall and spring at the lower trap, for brood years 1996 to 1998 (migration years 1998 to 2000). The SARs are representative of in-river Imnaha natural chinook salmon. The LGR to LGR SAR index for presmolt chinook salmon is as follows: 3.08% (BY 1996), 2.41% (BY 1997), and 2.98% (BY 1998). Smolt-to-adult return rate index for spring tagged smolts was lower: 1.75% (BY 1996), 2.24% (BY 1997) and 2.94% (BY 1998). Fall tagged natural chinook salmon from the upper and lower trap and spring tagged natural chinook salmon from the lower trap all had significantly different (p < 0.05) median and cumulative arrival timing at LGR during migration year 2001.« less

Reproductive Ecology of Yakima River Hatchery and Wild Spring Chinook; Yakima/Klickitat Fisheries Project Monitoring and Evaluation, 2001-2002 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Knudsen, Curtis M.

2003-05-01

This report is intended to satisfy two concurrent needs: (1) provide a contract deliverable from Oncorh Consulting to the Washington Department of Fish and Wildlife (WDFW), with emphasis on identification of salient results of value to ongoing Yakima/Klickitat Fisheries Project (YKFP) planning, and (2) summarize results of research that have broader scientific relevance. This is the second in a series of reports that address reproductive ecological research and monitoring of spring chinook in the Yakima River basin. In addition to within-year comparisons, between-year comparisons will be made to determine if traits of the wild Naches basin control population, the naturallymore » spawning population in the upper Yakima River and the hatchery control population are diverging over time. This annual report summarizes data collected between April 1, 2002 and March 31, 2003. In the future, these data will be compared to previous years to identify general trends and make preliminary comparisons. Supplementation success in the Yakima Klickitat Fishery Project's (YKFP) spring chinook (Oncorhynchus tshawytscha) program is defined as increasing natural production and harvest opportunities, while keeping adverse ecological interactions and genetic impacts within acceptable bounds (Busack et al. 1997). Within this context demographics, phenotypic traits, and reproductive ecology have significance because they directly affect natural productivity. In addition, significant changes in locally adapted traits due to hatchery influence, i.e. domestication, would likely be maladaptive resulting in reduced population productivity and fitness (Taylor 1991; Hard 1995). Thus, there is a need to study demographic and phenotypic traits in the YKFP in order to understand hatchery and wild population productivity, reproductive ecology, and the effects of domestication (Busack et al. 1997). Tracking trends in these traits over time is also a critical aspect of domestication monitoring (Busack et al. 2002) to determine whether trait changes have a genetic component and, if so, are they within acceptable limits. Each chapter of this report deals with monitoring phenotypic and demographic traits of Yakima River basin spring chinook comparing hatchery and wild returns in 2002; the second year of adult hatchery returns. The first chapter deals specifically with adult traits of American River, Naches basin (excluding the American River), and upper Yakima River spring chinook, excluding gametes. The second chapter examines the gametic traits and progeny produced by upper Yakima River wild and hatchery origin fish. In the third chapter, we describe work begun initially in 2002 to characterize and compare redds of naturally spawning wild and hatchery fish in the upper Yakima River.« less

Physiological and endocrine changes in Atlantic salmon smolts during hatchery rearing, downstream migration and ocean entry

USGS Publications Warehouse

McCormick, Stephen D.; Sheehan, Timothy F.; Björnsson, Björn Thrandur; Lipsky, Christine; Kocik, John F.; Regish, Amy M.; O'Dea, Michael F.

2013-01-01

Billions of hatchery salmon smolts are released annually in an attempt to mitigate anthropogenic impacts on freshwater habitats, often with limited success. Mortality of wild and hatchery fish is high during downstream and early ocean migration. To understand changes that occur during migration, we examined physiological and endocrine changes in Atlantic salmon (Salmo salar) smolts during hatchery rearing, downstream migration, and early ocean entry in two successive years. Gill Na+/K+-ATPase activity increased in the hatchery during spring, increased further after river release, and was slightly lower after recapture in the ocean. Plasma growth hormone levels increased in the hatchery, were higher in the river, and increased further in the ocean. Plasma IGF-I remained relatively constant in the hatchery, increased in the river, then decreased in the ocean. Plasma thyroid hormones were variable in the hatchery, but increased in both river- and ocean-captured smolts. Naturally reared fish had lower condition factor, gill NKA activity, and plasma thyroxine than hatchery fish in the river but were similar in the ocean. This novel data set provides a vital first step in understanding the role and norms of endocrine function in smolts and the metrics of successful marine entry.

Variation in feeding, aggression, and position choice between hatchery and wild cutthroat trout in an artificial stream

USGS Publications Warehouse

Mesa, Matthew G.

1991-01-01

I compared feeding, aggressive behavior, and spatial distribution of differently ranked individuals of hatchery and wild coastal cutthroat trout Oncorhynchus clarki clarki in an artificial stream. Both hatchery and wild groups established stable dominance hierarchies that seemed to be based on size differences. Hatchery and wild fish within a hierarchical rank fed at similar rates. Hatchery fish were more aggressive than their wild conspecifics, irrespective of rank. Dominant hatchery fish were evenly distributed in pools and riffles, whereas dominant wild fish were three times more often in pools than in riffles. In both groups, socially intermediate fish were almost evenly distributed between pools and riffles, and subordinate fish spent most of their time in pools. On average, hatchery fish spent 57% of their time in pools and 43% in riffles, whereas wild fish spent 71% of their time in pools and 29% in riffles. These results support the hypothesis that excessive expenditure of energy for unnecessary aggression, use of fast-flowing water, or other purposes contributes to poor survival of hatchery fish after they are stocked in streams. Poor survival would reduce the efficacy of using hatchery stocks to supplement wild production.

Prevention of zebra mussel infestation and dispersal during aquaculture operations

USGS Publications Warehouse

Waller, D.L.; Fisher, S.W.; Dabrowska, H.

1996-01-01

The zebra mussel Dreissena polymorpha, an exotic invasive species, poses a major threat to North American fish management programs and the aquaculture industry. Fish hatcheries may become infected with zebra mussels from a variety of sources, including the water supply, fish shipments, boats, and equipment. The hatcheries could then serve as agents for the overland dispersal of zebra mussels into stocked waters and to other fish hatcheries. We evaluated the effectiveness and safety of aquaculture chemicals for use in controlling zebra mussels in fish hatcheries and preventing dispersal of veligers during fish transport. Chemicals were evaluated for use in fish transport and as disinfectants for ponds and equipment. Standardized static toxicity tests were conducted with representative species of warmwater, coolwater, and coldwater fishes and with larval (3-d-old veligers), early juvenile (settling larvae), and adult zebra mussels. Chemical concentrations and exposure durations were based on recommended treatment levels for fish, eggs, and ponds. Recommended treatment levels were also exceeded, if necessary, to establish lethal levels for zebra mussels of different developmental stages. Our results indicate that some chemicals currently in use in hatcheries may be effective for controlling zebra mussels in various operations. Chloride salts were the safest and most effective therapeutants tested for use in fish transport. The toxicity of chloride salts to fish varied among species and with temperature; only one treatment regime (sodium chloride at 10,000 mg/L) was safe to all fish species that we tested, but it was only effective on veliger and settler stages of the zebra mussel. Effective disinfectants were benzalkonium chloride for use on equipment and rotenone for use in ponds after fish are harvested. The regulatory status of the identified chemicals is discussed as well as several nonchemical control alternatives.

Annual Stock Assessment - CWT [Coded Wire Tag program] (USFWS), Annual Report 2007.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pastor, Stephen M.

2009-07-21

In 1989 the Bonneville Power Administration (BPA) began funding the evaluation of production groups of juvenile anadromous fish not being coded-wire tagged for other programs. These groups were the 'Missing Production Groups'. Production fish released by the U.S. Fish and Wildlife Service (FWS) without representative coded-wire tags during the 1980s are indicated as blank spaces on the survival graphs in this report. This program is now referred to as 'Annual Stock Assessment - CWT'. The objectives of the 'Annual Stock Assessment' program are to: (1) estimate the total survival of each production group, (2) estimate the contribution of each productionmore » group to fisheries, and (3) prepare an annual report for USFWS hatcheries in the Columbia River basin. Coded-wire tag recovery information will be used to evaluate the relative success of individual brood stocks. This information can also be used by salmon harvest managers to develop plans to allow the harvest of excess hatchery fish while protecting threatened, endangered, or other stocks of concern. All fish release information, including marked/unmarked ratios, is reported to the Pacific States Marine Fisheries Commission (PSMFC). Fish recovered in the various fisheries or at the hatcheries are sampled to recover coded-wire tags. This recovery information is also reported to PSMFC. This report has been prepared annually starting with the report labeled 'Annual Report 1994'. Although the current report has the title 'Annual Report 2007', it was written in fall of 2008 using data available from RMIS that same year, and submitted as final in January 2009. The main objective of the report is to evaluate survival of groups which have been tagged under this ongoing project.« less

29 CFR 780.212 - Hatchery employees working on farms.

Code of Federal Regulations, 2010 CFR

2010-07-01

... 29 Labor 3 2010-07-01 2010-07-01 false Hatchery employees working on farms. 780.212 Section 780... STATEMENTS OF GENERAL POLICY OR INTERPRETATION NOT DIRECTLY RELATED TO REGULATIONS EXEMPTIONS APPLICABLE TO... Agriculture as It Relates to Specific Situations Hatchery Operations § 780.212 Hatchery employees working on...

29 CFR 780.210 - The typical hatchery operations constitute “agriculture.”

Code of Federal Regulations, 2014 CFR

2014-07-01

... EXEMPTIONS APPLICABLE TO AGRICULTURE, PROCESSING OF AGRICULTURAL COMMODITIES, AND RELATED SUBJECTS UNDER THE FAIR LABOR STANDARDS ACT Agriculture as It Relates to Specific Situations Hatchery Operations § 780.210 The typical hatchery operations constitute “agriculture.” As stated in § 780.127, the typical hatchery...

29 CFR 780.210 - The typical hatchery operations constitute “agriculture.”

Code of Federal Regulations, 2010 CFR

2010-07-01

... EXEMPTIONS APPLICABLE TO AGRICULTURE, PROCESSING OF AGRICULTURAL COMMODITIES, AND RELATED SUBJECTS UNDER THE FAIR LABOR STANDARDS ACT Agriculture as It Relates to Specific Situations Hatchery Operations § 780.210 The typical hatchery operations constitute “agriculture.” As stated in § 780.127, the typical hatchery...

29 CFR 780.210 - The typical hatchery operations constitute “agriculture.”

Code of Federal Regulations, 2011 CFR

2011-07-01

... EXEMPTIONS APPLICABLE TO AGRICULTURE, PROCESSING OF AGRICULTURAL COMMODITIES, AND RELATED SUBJECTS UNDER THE FAIR LABOR STANDARDS ACT Agriculture as It Relates to Specific Situations Hatchery Operations § 780.210 The typical hatchery operations constitute “agriculture.” As stated in § 780.127, the typical hatchery...

29 CFR 780.210 - The typical hatchery operations constitute “agriculture.”

Code of Federal Regulations, 2013 CFR

2013-07-01

... EXEMPTIONS APPLICABLE TO AGRICULTURE, PROCESSING OF AGRICULTURAL COMMODITIES, AND RELATED SUBJECTS UNDER THE FAIR LABOR STANDARDS ACT Agriculture as It Relates to Specific Situations Hatchery Operations § 780.210 The typical hatchery operations constitute “agriculture.” As stated in § 780.127, the typical hatchery...

29 CFR 780.210 - The typical hatchery operations constitute “agriculture.”

Code of Federal Regulations, 2012 CFR

2012-07-01

... EXEMPTIONS APPLICABLE TO AGRICULTURE, PROCESSING OF AGRICULTURAL COMMODITIES, AND RELATED SUBJECTS UNDER THE FAIR LABOR STANDARDS ACT Agriculture as It Relates to Specific Situations Hatchery Operations § 780.210 The typical hatchery operations constitute “agriculture.” As stated in § 780.127, the typical hatchery...

DOE Office of Scientific and Technical Information (OSTI.GOV)

Berggren, Thomas J.; Franzoni, Henry; Basham, Larry R.

The Comparative Survival Study (CSS) was initiated in 1996 as a multi-year program of the fishery agencies and tribes to estimate survival rates over different life stages for spring and summer Chinook (hereafter, Chinook) produced in major hatcheries in the Snake River basin and from selected hatcheries in the lower Columbia River. Much of the information evaluated in the CSS is derived from fish tagged with Passive Integrated Transponder (PIT) tags. A comparison of survival rates of Chinook marked in two different regions (which differ in the number of dams Chinook have to migrate through) provides insight into the effectsmore » of the Snake/Columbia hydroelectric system (hydrosystem). The CSS also compares the smolt-to-adult survival rates (SARs) for Snake River Chinook that were transported versus those that migrated in-river to below Bonneville Dam. Additional comparisons can be made within in-river experiences as well as comparison between the different collector projects from which smolts are transported. CSS also compares survival rates for wild Snake River spring and summer Chinook. These comparisons generate information regarding the relative effects of the current management actions used to recover this listed species. Scientists and managers have recently emphasized the importance of delayed hydrosystem mortality to long-term management decisions. Delayed hydrosystem mortality may be related to the smolts experience in the Federal Columbia River Power System, and could occur for both smolts that migrate in-river and smolts that are transported. The CSS PIT tag information on in-river survival rates and smolt-to-adult survival rates (SARs) of transported and in-river fish are relevant to estimation of ''D'', which partially describes delayed hydrosystem mortality. The parameter D is the differential survival rate of transported fish relative to fish that migrate in-river, as measured from below Bonneville Dam to adults returning to Lower Granite Dam. When D = 1, there is no difference in survival rate after hydrosystem passage. When D < 1, then transported smolts die at a greater rate after release below Bonneville Dam than smolts that have migrated in-river to below Bonneville Dam Major objectives of the CSS include: (1) development of a long-term index of transport SAR to in-river SAR for Snake River hatchery and wild spring and summer Chinook smolts measured at Lower Granite Dam; (2) develop a long-term index of survival rates from release of smolts at Snake River hatcheries to return of adults to the hatcheries; (3) compute and compare the overall SARs for selected upriver and downriver spring and summer Chinook hatchery and wild stocks; and (4) begin a time series of SARs for use in hypothesis testing and in the regional long-term monitoring and evaluation program. Primary CSS focus in this report is for wild and hatchery spring/summer Chinook that outmigrated in 1997 to 2002 and their respective adult returns through 2004.« less

Microsatellite analyses of San Franciscuito Creek rainbow trout

USGS Publications Warehouse

Nielsen, Jennifer L.

2000-01-01

Microsatellite genetic diversity found in San Francisquito Creek rainbow trout support a close genetic relationship with rainbow trout (Oncorhynchus mykiss) from another tributary of San Francisco Bay, Alameda Creek, and coastal trout found in Lagunitas Creek, Marin County, California. Fish collected for this study from San Francisquito Creek showed a closer genetic relationship to fish from the north-central California steelhead ESU than for any other listed group of O. mykiss. No significant genotypic or allelic frequency associations could be drawn between San Francisquito Creek trout and fish collected from the four primary rainbow trout hatchery strains in use in California, i.e. Whitney, Mount Shasta, Coleman, and Hot Creek hatchery fish. Indeed, genetic distance analyses (δµ2) supported separation between San Francisquito Creek trout and all hatchery trout with 68% bootstrap values in 1000 replicate neighbor-joining trees. Not surprisingly, California hatchery rainbow trout showed their closest evolutionary relationships with contemporary stocks derived from the Sacramento River. Wild collections of rainbow trout from the Sacramento-San Joaquin basin in the Central Valley were also clearly separable from San Francisquito Creek fish supporting separate, independent ESUs for two groups of O. mykiss (one coastal and one Central Valley) with potentially overlapping life histories in San Francisco Bay. These data support the implementation of management and conservation programs for rainbow trout in the San Francisquito Creek drainage as part of the central California coastal steelhead ESU.

Northeast Oregon Hatchery Project, Final Siting Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Watson, Montgomery

1995-03-01

This report presents the results of site analysis for the Bonneville Power Administration Northeast Oregon Hatchery Project. The purpose of this project is to provide engineering services for the siting and conceptual design of hatchery facilities for the Bonneville Power Administration. The hatchery project consists of artificial production facilities for salmon and steelhead to enhance production in three adjacent tributaries to the Columbia River in northeast Oregon: the Grande Ronde, Walla Walla, and Imnaha River drainage basins. Facilities identified in the master plan include adult capture and holding facilities; spawning incubation, and early rearing facilities; full-term rearing facilities; and directmore » release or acclimation facilities. The evaluation includes consideration of a main production facility for one or more of the basins or several smaller satellite production facilities to be located within major subbasins. The historic and current distribution of spring and fall chinook salmon and steelhead was summarized for the Columbia River tributaries. Current and future production and release objectives were reviewed. Among the three tributaries, forty seven sites were evaluated and compared to facility requirements for water and space. Site screening was conducted to identify the sites with the most potential for facility development. Alternative sites were selected for conceptual design of each facility type. A proposed program for adult holding facilities, final rearing/acclimation, and direct release facilities was developed.« less

Do open-cycle hatcheries relying on tourism conserve sea turtles? Sri Lankan developments and economic-ecological considerations.

PubMed

Tisdell, Clem; Wilson, Clevo

2005-04-01

By combining economic analysis of markets with ecological parameters, this article considers the role that tourism-based sea turtle hatcheries (of an open-cycle type) can play in conserving populations of sea turtles. Background is provided on the nature and development of such hatcheries in Sri Lanka. The modeling facilitates the assessment of the impacts of turtle hatcheries on the conservation of sea turtles and enables the economic and ecological consequences of tourism, based on such hatcheries, to be better appreciated. The results demonstrate that sea turtle hatcheries serving tourists can make a positive contribution to sea turtle conservation, but that their conservation effectiveness depends on the way they are managed. Possible negative effects are also identified. Economic market models are combined with turtle population survival relationships to predict the conservation impact of turtle hatcheries and their consequence for the total economic value obtained from sea turtle populations.

Estimating the hatchery fraction of a natural population: a Bayesian approach

USGS Publications Warehouse

Barber, Jarrett J.; Gerow, Kenneth G.; Connolly, Patrick J.; Singh, Sarabdeep

2011-01-01

There is strong and growing interest in estimating the proportion of hatchery fish that are in a natural population (the hatchery fraction). In a sample of fish from the relevant population, some are observed to be marked, indicating their origin as hatchery fish. The observed proportion of marked fish is usually less than the actual hatchery fraction, since the observed proportion is determined by the proportion originally marked, differential survival (usually lower) of marked fish relative to unmarked hatchery fish, and rates of mark retention and detection. Bayesian methods can work well in a setting such as this, in which empirical data are limited but for which there may be considerable expert judgment regarding these values. We explored a Bayesian estimation of the hatchery fraction using Monte Carlo–Markov chain methods. Based on our findings, we created an interactive Excel tool to implement the algorithm, which we have made available for free.

History and effects of hatchery salmon in the Pacific

USGS Publications Warehouse

Nielsen, Jennifer L.; Gallaugher, Patricia; Wood, Laurie

2004-01-01

There has been a long history of production of hatchery salmon along the Pacific coast - from California’s first efforts in the 1870s using eggs from chinook and rainbow trout to the recent large-scale production hatcheries for pink salmon in Japan and the Russian Far East. The rationale for this production has also varied from replacement of fish lost in commercial ocean harvests to mitigation and restoration of salmon in areas where extensive habitat alteration has reduced salmonid viability and abundance. Over the years, we have become very successful in producing a certain type of product from salmon hatcheries, but until recently we seldom questioned the impacts the production and release of hatchery fish may have on freshwater and marine aquatic ecosystems and on the sustainability of sympatric wild salmon populations. This paper addresses the history of hatcheries around the Pacific Rim and considers potential negative implications of hatchery-produced salmon through discussions of biological impacts and biodiversity, ecological impacts and competitive displacement, fish and ecosystem health, and genetic impacts of hatchery fish as threats to wild populations of Pacific salmon.

Differences in Lateral Line Morphology between Hatchery- and Wild-Origin Steelhead

PubMed Central

Brown, Andrew D.; Sisneros, Joseph A.; Jurasin, Tyler; Nguyen, Chau; Coffin, Allison B.

2013-01-01

Despite identification of multiple factors mediating salmon survival, significant disparities in survival-to-adulthood among hatchery- versus wild-origin juveniles persist. In the present report, we explore the hypothesis that hatchery-reared juveniles might exhibit morphological defects in vulnerable mechanosensory systems prior to release from the hatchery, potentiating reduced survival after release. Juvenile steelhead (Oncorhynchus mykiss) from two different hatcheries were compared to wild-origin juveniles on several morphological traits including lateral line structure, otolith composition (a proxy for auditory function), and brain weight. Wild juveniles were found to possess significantly more superficial lateral line neuromasts than hatchery-reared juveniles, although the number of hair cells within individual neuromasts was not significantly different across groups. Wild juveniles were also found to possess primarily normal, aragonite-containing otoliths, while hatchery-reared juveniles possessed a high proportion of crystallized (vaterite) otoliths. Finally, wild juveniles were found to have significantly larger brains than hatchery-reared juveniles. These differences together predict reduced sensitivity to biologically important hydrodynamic and acoustic signals from natural biotic (predator, prey, conspecific) and abiotic (turbulent flow, current) sources among hatchery-reared steelhead, in turn predicting reduced survival fitness after release. Physiological and behavioral studies are required to establish the functional significance of these morphological differences. PMID:23554988

Effects of hatchery fish density on emigration, growth, survival, and predation risk of natural steelhead parr in an experimental stream channel

USGS Publications Warehouse

Tatara, Christopher P.; Riley, Stephen C.; Berejikian, Barry A.

2011-01-01

Hatchery supplementation of steelhead Oncorhynchus mykiss raises concerns about the impacts on natural populations, including reduced growth and survival, displacement, and increased predation. The potential risks may be density dependent.We examined how hatchery stocking density and the opportunity to emigrate affect the responses of natural steelhead parr in an experimental stream channel and after 15 d found no density-dependent effects on growth, emigration, or survival at densities ranging from 1-6 hatchery parr/m2. The opportunity for steelhead parr to emigrate reduced predation by coastal cutthroat trout O. clarkii clarkii on both hatchery and natural steelhead parr. The cutthroat trout exhibited a type-I functional response (constant predation rate with increased prey density) for the hatchery and composite populations. In contrast, the predation rate on natural parr decreased as hatchery stocking density increased. Supplementation with hatchery parr at any experimental stocking density reduced the final natural parr density. This decline was explained by increased emigration fromthe supplemented groups. Natural parr had higher mean instantaneous growth rates than hatchery parr. The proportion of parr emigrating decreased as parr size increased over successive experimental trials. Smaller parr had lower survival and suffered higher predation. The final density of the composite population, a measure of supplementation effectiveness, increased with the hatchery steelhead stocking rate. Our results indicate that stocking larger hatchery parr (over 50 d postemergence) at densities within the carrying capacity would have low short-term impact on the growth, survival, and emigration of natural parr while increasing the density of the composite population; in addition, a stocking density greater than 3 fish/m2 might be a good starting point for the evaluation of parr stocking in natural streams.

Assessing the impact of stocking northern-origin hatchery brook trout on the genetics of wild populations in North Carolina

USGS Publications Warehouse

Kazyak, David C.; Rash, Jacob; Lubinski, Barbara A.; King, Tim L.

2018-01-01

The release of hatchery-origin fish into streams with endemics can degrade the genetics of wild populations if interbreeding occurs. Starting in the 1800s, brook trout descendent from wild populations in the northeastern United States were stocked from hatcheries into streams across broad areas of North America to create and enhance fishery resources. Across the southeastern United States, many millions of hatchery-origin brook trout have been released into hundreds of streams, but the extent of introgression with native populations is not well resolved despite large phylogeographic distances between these groups. We used three assessment approaches based on 12 microsatellite loci to examine the extent of hatchery introgression in 406 wild brook trout populations in North Carolina. We found high levels of differentiation among most collections (mean F′ST = 0.718), and among most wild collections and hatchery strains (mean F′ST = 0.732). Our assessment of hatchery introgression was consistent across the three metrics, and indicated that most wild populations have not been strongly influenced by supplemental stocking. However, a small proportion of wild populations in North Carolina appear to have been strongly influenced by stocked conspecifics, or in some cases, may have been founded entirely by hatchery lineages. In addition, we found significant differences in the apparent extent of hatchery introgression among major watersheds, with the Savannah River being the most strongly impacted. Conversely, populations in the Pee Dee River watershed showed little to no evidence of hatchery introgression. Our study represents the first large-scale effort to quantify the extent of hatchery introgression across brook trout populations in the southern Appalachians using highly polymorphic microsatellite markers.

Reduced reproductive success of hatchery coho salmon in the wild: insights into most likely mechanisms.

PubMed

Thériault, Véronique; Moyer, Gregory R; Jackson, Laura S; Blouin, Michael S; Banks, Michael A

2011-05-01

Supplementation of wild salmonids with captive-bred fish is a common practice for both commercial and conservation purposes. However, evidence for lower fitness of captive-reared fish relative to wild fish has accumulated in recent years, diminishing the apparent effectiveness of supplementation as a management tool. To date, the mechanism(s) responsible for these fitness declines remain unknown. In this study, we showed with molecular parentage analysis that hatchery coho salmon (Oncorhynchus kisutch) had lower reproductive success than wild fish once they reproduced in the wild. This effect was more pronounced in males than in same-aged females. Hatchery spawned fish that were released as unfed fry (age 0), as well as hatchery fish raised for one year in the hatchery (released as smolts, age 1), both experienced lower lifetime reproductive success (RS) than wild fish. However, the subset of hatchery males that returned as 2-year olds (jacks) did not exhibit the same fitness decrease as males that returned as 3-year olds. Thus, we report three lines of evidence pointing to the absence of sexual selection in the hatchery as a contributing mechanism for fitness declines of hatchery fish in the wild: (i) hatchery fish released as unfed fry that survived to adulthood still had low RS relative to wild fish, (ii) age-3 male hatchery fish consistently showed a lower relative RS than female hatchery fish (suggesting a role for sexual selection), and (iii) age-2 jacks, which use a sneaker mating strategy, did not show the same declines as 3-year olds, which compete differently for females (again, implicating sexual selection). © 2011 Blackwell Publishing Ltd.

Transcriptomic Responses of Atlantic Salmon (Salmo salar) to Environmental Enrichment during Juvenile Rearing

PubMed Central

Evans, Melissa L.; Hori, Tiago S.; Rise, Matthew L.; Fleming, Ian A.

2015-01-01

Captive rearing programs (hatcheries) are often used in conservation and management efforts for at-risk salmonid fish populations. However, hatcheries typically rear juveniles in environments that contrast starkly with natural conditions, which may lead to phenotypic and/or genetic changes that adversely affect the performance of juveniles upon their release to the wild. Environmental enrichment has been proposed as a mechanism to improve the efficacy of population restoration efforts from captive-rearing programs; in this study, we examine the influence of environmental enrichment during embryo and yolk-sac larval rearing on the transcriptome of Atlantic salmon (Salmo salar). Full siblings were reared in either a hatchery environment devoid of structure or an environment enriched with gravel substrate. At the end of endogenous feeding by juveniles, we examined patterns of gene transcript abundance in head tissues using the cGRASP-designed Agilent 4×44K microarray. Significance analysis of microarrays (SAM) indicated that 808 genes were differentially transcribed between the rearing environments and a total of 184 gene ontological (GO) terms were over- or under-represented in this gene list, several associated with mitosis/cell cycle and muscle and heart development. There were also pronounced differences among families in the degree of transcriptional response to rearing environment enrichment, suggesting that gene-by-environment effects, possibly related to parental origin, could influence the efficacy of enrichment interventions. PMID:25742646

Transcriptomic responses of Atlantic salmon (Salmo salar) to environmental enrichment during juvenile rearing.

PubMed

Evans, Melissa L; Hori, Tiago S; Rise, Matthew L; Fleming, Ian A

2015-01-01

Captive rearing programs (hatcheries) are often used in conservation and management efforts for at-risk salmonid fish populations. However, hatcheries typically rear juveniles in environments that contrast starkly with natural conditions, which may lead to phenotypic and/or genetic changes that adversely affect the performance of juveniles upon their release to the wild. Environmental enrichment has been proposed as a mechanism to improve the efficacy of population restoration efforts from captive-rearing programs; in this study, we examine the influence of environmental enrichment during embryo and yolk-sac larval rearing on the transcriptome of Atlantic salmon (Salmo salar). Full siblings were reared in either a hatchery environment devoid of structure or an environment enriched with gravel substrate. At the end of endogenous feeding by juveniles, we examined patterns of gene transcript abundance in head tissues using the cGRASP-designed Agilent 4×44K microarray. Significance analysis of microarrays (SAM) indicated that 808 genes were differentially transcribed between the rearing environments and a total of 184 gene ontological (GO) terms were over- or under-represented in this gene list, several associated with mitosis/cell cycle and muscle and heart development. There were also pronounced differences among families in the degree of transcriptional response to rearing environment enrichment, suggesting that gene-by-environment effects, possibly related to parental origin, could influence the efficacy of enrichment interventions.

Umatilla Basin Natural Production Monitoring and Evaluation; 2003-2004 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schwartz, Jesse D.M.; Contor, Craig C.; Hoverson, Eric

2005-10-01

The Umatilla Basin Natural Production Monitoring and Evaluation Project (UBNPMEP) is funded by Bonneville Power Administration (BPA) as directed by section 4(h) of the Pacific Northwest Electric Power Planning and Conservation Act of 1980 (P. L. 96-501). This project is in accordance with and pursuant to measures 4.2A, 4.3C.1, 7.1A.2, 7.1C.3, 7.1C.4 and 7.1D.2 of the Northwest Power Planning Council's (NPPC) Columbia River Basin Fish and Wildlife Program (NPPC 1994). Work was conducted by the Fisheries Program of the Confederated Tribes of the Umatilla Indian Reservation (CTUIR). UBNPMEP is coordinated with two ODFW research projects that also monitor and evaluatemore » the success of the Umatilla Fisheries Restoration Plan. Our project deals with the natural production component of the plan, and the ODFW projects evaluate hatchery operations (project No. 19000500, Umatilla Hatchery M & E) and smolt outmigration (project No. 198902401, Evaluation of Juvenile Salmonid Outmigration and Survival in the Lower Umatilla River). Collectively these three projects comprehensively monitor and evaluate natural and hatchery salmonid production in the Umatilla River Basin. Table 1 outlines relationships with other BPA supported projects. The need for natural production monitoring has been identified in multiple planning documents including Wy-Kan-Ush-Mi Wa-Kish-Wit Volume I, 5b-13 (CRITFC 1996), the Umatilla Hatchery Master Plan (CTUIR & ODFW 1990), the Umatilla Basin Annual Operation Plan (ODFW and CTUIR 2004), the Umatilla Subbasin Summary (CTUIR & ODFW 2001), the Subbasin Plan (CTUIR & ODFW 2004), and the Comprehensive Research, Monitoring, and Evaluation Plan (Schwartz & Cameron Under Revision). Natural production monitoring and evaluation is also consistent with Section III, Basinwide Provisions, Strategy 9 of the 2000 Columbia River Basin Fish and Wildlife Program (NPPC 1994, NPPC 2004). The need for monitoring the natural production of salmonids in the Umatilla River Basin developed with the efforts to restore natural populations of spring and fall Chinook salmon, (Oncorhynchus tshawytsha) coho salmon and (O. kisutch) and enhance summer steelhead (O. mykiss). The need for restoration began with agricultural development in the early 1900's that extirpated salmon and reduced steelhead runs (BOR 1988). The most notable development was the construction and operation of Three-Mile Falls Dam (3MD) and other irrigation projects that dewatered the Umatilla River during salmon migrations. The Confederated Tribes of the Umatilla Indian Reservation (CTUIR) and the Oregon Department of Fish and Wildlife (ODFW) developed the Umatilla Hatchery Master Plan to restore the historical fisheries in the basin. The plan was completed in 1990 and included the following objectives: (1) Establish hatchery and natural runs of Chinook and coho salmon. (2) Enhance existing summer steelhead populations through a hatchery program. (3) Provide sustainable tribal and non-tribal harvest of salmon and steelhead. (4) Maintain the genetic characteristics of salmonids in the Umatilla River Basin. (5) Produce almost 48,000 adult returns to Three-Mile Falls Dam. The goals were reviewed in 1999 and were changed to 31,500 adult salmon and steelhead returns (Table 2). We conduct core long-term monitoring activities each year as well as two and three-year projects that address special needs for adaptive management. Examples of these projects include adult passage evaluations (Contor et al. 1995, Contor et al. 1996, Contor et al. 1997, Contor et al. 1998), genetic monitoring (Currens & Schreck 1995, Narum et al. 2004), and habitat assessment surveys (Contor et al. 1995, Contor et al. 1996, Contor et al. 1997, Contor et al. 1998). Our project goal is to provide quality information to managers and researchers working to restore anadromous salmonids to the Umatilla River Basin. This is the only project that monitors the restoration of naturally producing salmon and steelhead in the basin.« less

9 CFR 145.93 - Terminology and classification; flocks and products.

Code of Federal Regulations, 2012 CFR

2012-01-01

... Influenza Clean. This program is intended to be the basis from which the breeding-hatchery industry may conduct a program for the prevention and control of the H5/H7 subtypes of avian influenza. It is intended to determine the presence of the H5/H7 subtypes of avian influenza in meat-type waterfowl breeding...

9 CFR 145.93 - Terminology and classification; flocks and products.

Code of Federal Regulations, 2013 CFR

2013-01-01

... Influenza Clean. This program is intended to be the basis from which the breeding-hatchery industry may conduct a program for the prevention and control of the H5/H7 subtypes of avian influenza. It is intended to determine the presence of the H5/H7 subtypes of avian influenza in meat-type waterfowl breeding...

9 CFR 145.93 - Terminology and classification; flocks and products.

Code of Federal Regulations, 2014 CFR

2014-01-01

... Influenza Clean. This program is intended to be the basis from which the breeding-hatchery industry may conduct a program for the prevention and control of the H5/H7 subtypes of avian influenza. It is intended to determine the presence of the H5/H7 subtypes of avian influenza in meat-type waterfowl breeding...

40 CFR Appendix C to Part 122 - Criteria for Determining a Concentrated Aquatic Animal Production Facility (§ 122.24)

Code of Federal Regulations, 2010 CFR

2010-07-01

... ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) WATER PROGRAMS EPA ADMINISTERED PERMIT PROGRAMS: THE NATIONAL... Concentrated Aquatic Animal Production Facility (§ 122.24) A hatchery, fish farm, or other facility is a... aquatic animals in either of the following categories: (a) Cold water fish species or other cold water...

40 CFR Appendix C to Part 122 - Criteria for Determining a Concentrated Aquatic Animal Production Facility (§ 122.24)

Code of Federal Regulations, 2011 CFR

2011-07-01

... ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) WATER PROGRAMS EPA ADMINISTERED PERMIT PROGRAMS: THE NATIONAL... Concentrated Aquatic Animal Production Facility (§ 122.24) A hatchery, fish farm, or other facility is a... aquatic animals in either of the following categories: (a) Cold water fish species or other cold water...

50 CFR 71.1 - Opening of national fish hatchery areas to hunting.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 50 Wildlife and Fisheries 9 2013-10-01 2013-10-01 false Opening of national fish hatchery areas to hunting. 71.1 Section 71.1 Wildlife and Fisheries UNITED STATES FISH AND WILDLIFE SERVICE, DEPARTMENT OF... FISH HATCHERY AREAS Hunting § 71.1 Opening of national fish hatchery areas to hunting. National fish...

50 CFR 71.1 - Opening of national fish hatchery areas to hunting.

Code of Federal Regulations, 2011 CFR

2011-10-01

... 50 Wildlife and Fisheries 8 2011-10-01 2011-10-01 false Opening of national fish hatchery areas to hunting. 71.1 Section 71.1 Wildlife and Fisheries UNITED STATES FISH AND WILDLIFE SERVICE, DEPARTMENT OF... FISH HATCHERY AREAS Hunting § 71.1 Opening of national fish hatchery areas to hunting. National fish...

50 CFR 71.1 - Opening of national fish hatchery areas to hunting.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 50 Wildlife and Fisheries 9 2012-10-01 2012-10-01 false Opening of national fish hatchery areas to hunting. 71.1 Section 71.1 Wildlife and Fisheries UNITED STATES FISH AND WILDLIFE SERVICE, DEPARTMENT OF... FISH HATCHERY AREAS Hunting § 71.1 Opening of national fish hatchery areas to hunting. National fish...

50 CFR 71.1 - Opening of national fish hatchery areas to hunting.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 50 Wildlife and Fisheries 9 2014-10-01 2014-10-01 false Opening of national fish hatchery areas to hunting. 71.1 Section 71.1 Wildlife and Fisheries UNITED STATES FISH AND WILDLIFE SERVICE, DEPARTMENT OF... FISH HATCHERY AREAS Hunting § 71.1 Opening of national fish hatchery areas to hunting. National fish...

50 CFR 71.11 - Opening of national fish hatchery areas to fishing.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 50 Wildlife and Fisheries 6 2010-10-01 2010-10-01 false Opening of national fish hatchery areas to fishing. 71.11 Section 71.11 Wildlife and Fisheries UNITED STATES FISH AND WILDLIFE SERVICE, DEPARTMENT OF... FISH HATCHERY AREAS Fishing § 71.11 Opening of national fish hatchery areas to fishing. National fish...

50 CFR 71.1 - Opening of national fish hatchery areas to hunting.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 50 Wildlife and Fisheries 6 2010-10-01 2010-10-01 false Opening of national fish hatchery areas to hunting. 71.1 Section 71.1 Wildlife and Fisheries UNITED STATES FISH AND WILDLIFE SERVICE, DEPARTMENT OF... FISH HATCHERY AREAS Hunting § 71.1 Opening of national fish hatchery areas to hunting. National fish...

Effects of smolt release timing and size on the survival of hatchery-origin coho salmon in the Strait of Georgia

NASA Astrophysics Data System (ADS)

Irvine, J. R.; O'Neill, M.; Godbout, L.; Schnute, J.

2013-08-01

Altering release sizes and timings of coho salmon smolts from hatcheries in the Strait of Georgia will not reverse the precipitous survival declines of the past three decades. We modeled the effects on survival of ocean entry year, mean smolt size (weight), and release day. Ocean entry year was by far the most important. During 1979-2006, smolt to adult survivals declined similarly for hatchery and wild coho salmon, although wild salmon consistently survived at higher rates. Best models differed among hatcheries, implying location-specific differences in the optimal size and timing of release. At four of five hatcheries, heavier smolts survived significantly better than lighter smolts. At one hatchery, a significant interaction between ocean entry year and smolt weight reflected an increased positive effect of weight later in the time series. At two Vancouver Island hatcheries, early release groups appeared to survive better than later releases in early years, while later release groups survived best in recent years. We recommend: (1) hatchery managers release coho salmon smolts throughout the outmigration period of higher surviving wild coho salmon smolts and (2) an experimental approach using hatcheries to evaluate density-dependent effects on coho salmon growth and survival.

On the reproductive success of early-generation hatchery fish in the wild

PubMed Central

Christie, Mark R; Ford, Michael J; Blouin, Michael S

2014-01-01

Large numbers of hatchery salmon spawn in wild populations each year. Hatchery fish with multiple generations of hatchery ancestry often have heritably lower reproductive success than wild fish and may reduce the fitness of an entire population. Whether this reduced fitness also occurs for hatchery fish created with local- and predominantly wild-origin parents remains controversial. Here, we review recent studies on the reproductive success of such ‘early-generation’ hatchery fish that spawn in the wild. Combining 51 estimates from six studies on four salmon species, we found that (i) early-generation hatchery fish averaged only half the reproductive success of their wild-origin counterparts when spawning in the wild, (ii) the reduction in reproductive success was more severe for males than for females, and (iii) all species showed reduced fitness due to hatchery rearing. We review commonalities among studies that point to possible mechanisms (e.g., environmental versus genetic effects). Furthermore, we illustrate that sample sizes typical of these studies result in low statistical power to detect fitness differences unless the differences are substantial. This review demonstrates that reduced fitness of early-generation hatchery fish may be a general phenomenon. Future research should focus on determining the causes of those fitness reductions and whether they lead to long-term reductions in the fitness of wild populations. PMID:25469167

Spawning site fidelity of wild and hatchery lake trout (Salvelinus namaycush) in northern Lake Huron

USGS Publications Warehouse

Binder, Thomas; Riley, Stephen C.; Holbrook, Christopher; Hansen, Michael J.; Bergstedt, Roger A.; Bronte, Charles R.; He, Ji; Krueger, Charles C.

2016-01-01

Fidelity to high-quality spawning sites helps ensure that adults repeatedly spawn at sites that maximize reproductive success. Fidelity is also an important behavioural characteristic to consider when hatchery-reared individuals are stocked for species restoration, because artificial rearing environments may interfere with cues that guide appropriate spawning site selection. Acoustic telemetry was used in conjunction with Cormack–Jolly–Seber capture–recapture models to compare degree of spawning site fidelity of wild and hatchery-reared lake trout (Salvelinus namaycush) in northern Lake Huron. Annual survival was estimated to be between 77% and 81% and did not differ among wild and hatchery males and females. Site fidelity estimates were high in both wild and hatchery-reared lake trout (ranging from 0.78 to 0.94, depending on group and time filter), but were slightly lower in hatchery-reared fish than in wild fish. The ecological implication of the small difference in site fidelity between wild and hatchery-reared lake trout is unclear, but similarities in estimates suggest that many hatchery-reared fish use similar spawning sites to wild fish and that most return to those sites annually for spawning.

Development of an Applied Fisheries Science Program for Native Alaskans at Sheldon Jackson College (Sitka, Alaska). Fifth Progress Report, 1 February 1977.

ERIC Educational Resources Information Center

Seifert, Mel

Summarizing the beginning of the second year of operation of the hatchery and educational program provided by the Applied Fisheries Science Program at Sheldon Jackson College in Sitka, Alaska for Alaska Natives and non-Native groups interested in salmon ranching, this fifth semi-annual report covers the period July 1 through December 31, 1976 and…

Distribution, migration behavior, habitat use, and species interactions of fall-released juvenile hatchery spring Chinook salmon in the Deschutes River, Oregon, 2003

USGS Publications Warehouse

Reagan, R.E.; Adams, N.S.; Rondorf, D.W.; Fitzgerald, G.; Spateholts, R.; Hoffman, T.; Olson, D.E.

2005-01-01

In a review of National Fish Hatcheries (NFH), the U.S. Fish and Wildlife Service (USFWS) identified the need to assess the fate of hatchery-reared fish and their potential effect on the aquatic community (USFWS 1998). Additionally, the National Marine Fisheries Service (NMFS) recommended monitoring and evaluating ecological interactions between hatchery and wild fish (NMFS 1999; Columbia River Biological Opinion). In 2003, a study was designed to investigate the fate of hatchery-reared fish and to assess habitat use and fish interactions in the Deschutes River, Oregon.

8. GENERAL INTERIOR VIEW OF FISH HATCHERY BUILDING, SHOWING INCUBATION ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

8. GENERAL INTERIOR VIEW OF FISH HATCHERY BUILDING, SHOWING INCUBATION TANKS. - Bonneville Project, Fish Hatchery, On Columbia River bordered on South by Union Pacific, Bonneville, Multnomah County, OR

Occurrence of antibiotics in water from fish hatcheries

USGS Publications Warehouse

Thurman, Earl M.; Dietze, Julie E.; Scribner, Elisabeth A.

2002-01-01

The recent discovery of pharmaceuticals in streams across the United States (Kolpin and others, 2002) has raised the visibility and need for monitoring of antibiotics in the environment. Possible sources of antibiotics and other pharmaceuticals in streams may include fish hatcheries. This fact sheet presents the results from a preliminary study of fish hatcheries across the United States for the occurrence and concentration of antibiotics present in fish hatchery water. The study examines both sufonamides and tetracyclines. Sulfonamides are synthetic compounds, and tetracyclines are naturally occurring compounds. The use of antibiotics added to specially formulated feed is a common practice in fish hatcheries to treat and prevent bacterial infections in large fish populations. U.S. Food and Drug Administration (FDA) approved antibiotics are oxytetracycline-HCI, sulfamerazine, and a combination drug containing ormetoprim and sulfadiamethoxine (U.S. Food and Drug Administration, 2003). During January 2001?June 2002, the U.S. Geological Survey (USGS) Organic Geochemistry Research Laboratory (OGRL), Lawrence, Kansas, cooperatively collected water samples from 13 fish hatcheries across the United States (fig. 1) with the assistance of hatchery operators. A method for the analysis of antibiotics was developed and used to identify and quantify these compounds in fish hatchery water (Lindsey and others, 2001). This study was completed to determine if trace levels of antibiotics [approximately 1 microgram per liter (?g/L) or 1 part per billion or greater occurred] in which water associated with fish hatcheries, which are a potential source of these compounds in surface water.

Chemical and histological studies of wild and hatchery salmon in fresh water

USGS Publications Warehouse

Wood, E.M.; Yasutake, W.T.; Halver, J.E.; Woodall, A.N.

1960-01-01

In a study of coho salmon (Oncorhynchus kisutch), the gross chemical and histological changes occurring over a 14-month period spent in fresh water were determined. The determinations were made at 3-month intervals on: 1) hatchery-reared fish, 2) fish hatchery-reared for 3, 6, 9, and 12 months and then planted in a controlled stream for the remainder of the period; and 3) an indigenous group of wild fish in this stream. Wild fish showed high incidence of tissue damage from spinose hairs of the moth larva, Halisidota argentata. Hatchery fish were similarly affected with the severity and incidence of lesions varying directly with the time of exposure of the larvae in the wild environment. Both groups of fish were heavily parasitized by sporozoan organisms in the kidney and spinal cord. Kidney disease appeared in both wild and planted hatchery fish. The gross chemical composition of hatchery fish transformed rapidly after planting to that of the wild fish. Although the initial rate of fat loss is essentially constant for all hatchery groups after planting, fish that were hatchery reared for 9 to 12 months did not complete the transformation to the wild-type body composition by the time of downstream migration at 14 months.

Are antipredator behaviours of hatchery Salmo salar juveniles similar to wild juveniles?

PubMed

Salvanes, A G V

2017-05-01

This study explores how antipredator behaviour of juvenile Atlantic salmon Salmo salar developed during conventional hatchery rearing of eggs from wild brood stock, compared with the behaviour of wild-caught juveniles from the same population. Juveniles aged 1+ years were tested in two unfamiliar environments; in one S. salar were presented with simulated predator attacks and in the other they were given the opportunity to explore an open-field arena. No difference was found in their spontaneous escape responses or ventilation rate (reflex responses) after simulated predator attacks. Hatchery-reared juveniles were more risk-prone in their behaviours than wild-caught individuals. Hatchery juveniles stayed less time in association with shelter. In the open-field arena, hatchery juveniles were more active than wild juveniles. Hatchery juveniles were also immobile for less time and spent a shorter amount of time than wild juveniles in the fringe of the open-field arena. Salmo salar size had no effect on the observed behaviour. Overall, this study provides empirical evidence that one generation of hatchery rearing does not change reflex responses associated with threats, whereas antipredator behaviour, typically associated with prior experience, was less developed in hatchery-reared than in wild individuals. © 2017 The Fisheries Society of the British Isles.

4. DETAIL EXTERIOR VIEW OF FISH HATCHERY BUILDING'S CENTRAL GABLE; ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

4. DETAIL EXTERIOR VIEW OF FISH HATCHERY BUILDING'S CENTRAL GABLE; MASONRY WALL AND FLOWERBED IN FOREGROUND. - Bonneville Project, Fish Hatchery, On Columbia River bordered on South by Union Pacific, Bonneville, Multnomah County, OR

2. GENERAL EXTERIOR VIEW OF FISH HATCHERY BUILDING LOOKING NORTH; ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

2. GENERAL EXTERIOR VIEW OF FISH HATCHERY BUILDING LOOKING NORTH; REINFORCED CONCRETE FISH PONDS IN FOREGROUND. - Bonneville Project, Fish Hatchery, On Columbia River bordered on South by Union Pacific, Bonneville, Multnomah County, OR

9. GENERAL EXTERIOR VIEW LOOKING NORTH, SHOWING FORMER FISH HATCHERY ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

9. GENERAL EXTERIOR VIEW LOOKING NORTH, SHOWING FORMER FISH HATCHERY OFFICE BUILDING (PRESENTLY USED AS GARDENER'S OFFICE). - Bonneville Project, Fish Hatchery, On Columbia River bordered on South by Union Pacific, Bonneville, Multnomah County, OR

Occurrence of antibiotics in water from 13 fish hatcheries, 2001-2003

USGS Publications Warehouse

Dietze, J.E.; Scribner, E.A.; Meyer, M.T.; Kolpin, D.W.

2005-01-01

A 2-year study of extensive and intensive fish hatcheries was conducted to assess the general temporal occurrence of antibiotics in aquaculture. Antibiotics were detected in 15% of the water samples collected during the 2001-2002 collection period and in 31% of the samples during the 2003 collection period. Antibiotics were detected more frequently in samples from the intensive hatcheries (17 and 39%) than in samples from the extensive hatcheries (14 and 4%) during the 2001-2002 and 2003 collection periods, respectively. The maximum ormetoprim, oxytetracycline, and sulphadimethoxine concentrations were higher in samples from the intensive hatcheries (12, 10, and 36 µg L-1), respectively, than in samples from the extensive hatcheries (<0.05, 0.31, and 1.2 µg L-1), respectively. Sulphadimethoxine persisted for a longer period of time (up to 48 days) than ormetoprim (up to 28 days) and oxytetracycline (less than 20 days).

Grande Ronde Endemic Spring Chinook Salmon Supplementation Program : Facility Operation and Maintenance Facilities, Annual Report 2003.

DOE Office of Scientific and Technical Information (OSTI.GOV)

McLean, Michael L.; Seeger, Ryan; Hewitt, Laurie

2004-01-01

Anadromous salmonid stocks have declined in both the Grande Ronde River Basin (Lower Snake River Compensation Plan (LSRCP) Status Review Symposium 1998) and in the entire Snake River Basin (Nehlsen et al. 1991), many to the point of extinction. The Grande Ronde River Basin historically supported large populations of fall and spring chinook (Oncorhynchus tshawytscha), sockeye (O. nerka), and coho (O. kisutch) salmon and steelhead trout (O. mykiss) (Nehlsen et al. 1991). The decline of chinook salmon and steelhead populations and extirpation of coho and sockeye salmon in the Grande Ronde River Basin was, in part, a result of constructionmore » and operation of hydroelectric facilities, over fishing, and loss and degradation of critical spawning and rearing habitat in the Columbia and Snake River basins (Nehlsen et al. 1991). Hatcheries were built in Oregon, Washington and Idaho under the Lower Snake River Compensation Plan (LSRCP) to compensate for losses of anadromous salmonids due to the construction and operation of the lower four Snake River dams. Lookingglass Hatchery (LGH) on Lookingglass Creek, a tributary of the Grande Ronde River, was completed under LSRCP in 1982 and has served as the main incubation and rearing site for chinook salmon programs for Grande Ronde and Imnaha rivers in Oregon. Despite these hatchery programs, natural spring chinook populations continued to decline resulting in the National Marine Fisheries Service (NMFS) listing Snake River spring/summer chinook salmon as ''threatened'' under the federal Endangered Species Act (1973) on 22 April 1992. Continuing poor escapement levels and declining population trends indicated that Grande Ronde River basin spring chinook salmon were in imminent danger of extinction. These continuing trends led fisheries co-managers in the basin to initiate the Grande Ronde Endemic Spring Chinook Salmon Supplementation Program (GRESCSSP) in order to prevent extinction and preserve options for use of endemic fish stocks in future artificial propagation programs. The GRESCSSP was implemented in three Grande Ronde River basin tributaries; the Lostine and upper Grande Ronde rivers and Catherine Creek. The GRESCSSP employs two broodstock strategies utilizing captive and conventional brood sources. The captive brood program began in 1995, with the collection of parr from the three tributary areas. The conventional broodstock component of the program began in 1997 with the collection of natural adults returning to these tributary areas. Although LGH was available as the primary production facility for spring chinook programs in the Grande Ronde Basin, there were never any adult or juvenile satellite facilities developed in the tributary areas that were to be supplemented. An essential part of the GRESCSSP was the construction of adult traps and juvenile acclimation facilities in these tributary areas. Weirs were installed in 1997 for the collection of adult broodstock for the conventional component of the program. Juvenile facilities were built in 2000 for acclimation of the smolts produced by the captive and conventional broodstock programs and as release sites within the natural production areas of their natal streams. The Confederated Tribes of the Umatilla Indian Reservation (CTUIR) operate both the juvenile acclimation and adult trapping facilities located on Catherine Creek and the upper Grande Ronde River under this project. The Nez Perce Tribe (NPT) operate the facilities on the Lostine River under a sister project. Hatcheries were also built in Oregon, Washington and Idaho under the LSRCP to compensate for losses of summer steelhead due to the construction and operation of the lowest four Snake River dams. Despite these harvest-driven hatchery programs, natural summer steelhead populations continued to decline as evidenced by declining counts at Lower Granite Dam since 1995 (Columbia River Data Access in Real Time, DART) and low steelhead redd counts on index streams in the Grande Ronde Basin. Because of low escapement the Snake River summer steelhead were listed as threatened under the Endangered Species Act of 1973 by the National Marine Fisheries Service (NMFS) on 18 August, 1997. Co-managers have also discontinued off-station releases of juvenile Wallowa stock (non-endemic) hatchery summer steelhead into Catherine Creek in 1998 and the upper Grande Ronde River in 1999. Data are lacking on adult return numbers and the genetic make-up of populations that return to tributaries of the Grande Ronde River basin, Catherine Creek and the upper Grande Ronde River specifically. Adult fish weirs are in place on Catherine Creek and the upper Grande Ronde River and data on summer steelhead populations in those areas are collected.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harnish, Ryan A.; Green, Ethan D.; Vernon, Christopher R.

The purpose of this study was to determine the extent to which juvenile hatchery summer steelhead and wild winter steelhead overlap in space and time, to evaluate the extent of residualism among hatchery summer steelhead in the South Santiam River, and to evaluate the potential for negative ecological interactions among hatchery summer steelhead and wild winter steelhead. Because it is not possible to visually discern juvenile winter steelhead from resident rainbow trout, we treated all adipose-intact juvenile O. mykiss as one group that represented juvenile wild winter steelhead. The 2014 study objectives were to 1) estimate the proportion of hatcherymore » summer steelhead that residualized in the South Santiam River in 2014, 2) determine the extent to which hatchery and naturally produced O. mykiss overlapped in space and time in the South Santiam River, and 3) characterize the behavioral interactions between hatchery-origin juvenile summer steelhead and naturally produced O. mykiss. We used a combination of radio telemetry and direct observations (i.e., snorkeling) to determine the potential for negative interactions between hatchery summer and wild winter steelhead juveniles in the South Santiam River. Data collected from these two independent methods indicated that a significant portion of the hatchery summer steelhead released as smolts did not rapidly emigrate from the South Santiam River in 2014. Of the 164 radio-tagged steelhead that volitionally left the hatchery, only 66 (40.2%) were detected outside of the South Santiam River. Forty-four (26.8% of 164) of the radio-tagged hatchery summer steelhead successfully emigrated to Willamette Falls. Thus, the last known location of the majority of the tagged fish (98 of 164 = 59.8%) was in the South Santiam River. Thirty-three of the tagged hatchery steelhead were detected in the South Santiam River during mobile-tracking surveys. Of those, 21 were found to be alive in the South Santiam River over three months after their release, representing a residualization rate of 12.8% (21 of 164). Snorkeling revealed considerable overlap of habitat use (in space and time) by residual hatchery steelhead and naturally produced O. mykiss in the South Santiam River. Results from our study (and others) also indicated that hatchery steelhead juveniles typically dominate interactions with naturally produced O. mykiss juveniles. The overlap in space and time, combined with the competitive advantage that residual hatchery steelhead appear to have over naturally produced O. mykiss, increases the potential for negative ecological interactions that could have population-level effects on the wild winter steelhead population of the South Santiam River.« less

Smolt Monitoring Program Comparative Survival Rate Study (CSS); Oregon Department of Fish and Wildlife, Annual Report 2001-2002.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jonasson, Brian; Carmichael, Richard

2003-05-01

We PIT-tagged juvenile spring chinook salmon reared at Lookingglass Hatchery in October 2001 as part of the Comparative Survival Rate Study (CSS) for migratory year (MY) 2002. We tagged 20,998 Imnaha stock spring chinook salmon, and after mortality and tag loss, we allowed the remaining 20,920 fish to leave the acclimation pond at our Imnaha River satellite facility beginning 21 March 2002 to begin their seaward migration. The fish remaining in the pond were forced out on 17 April 2002. We tagged 20,973 Catherine Creek stock captive brood progeny spring chinook salmon, and after mortality and tag loss, we allowedmore » the remaining 20,796 fish to leave the acclimation ponds at our Catherine Creek satellite facility beginning 1 April 2001 to begin their seaward migration. The fish remaining in the ponds were forced out on 15 April 2001. We estimated survival rates, from release to Lower Granite Dam in MY 2002, for three stocks of hatchery spring chinook salmon tagged at Lookingglass Hatchery to determine their relative migration performance. Imnaha River stock and Lostine River stock survival rates were similar and were higher than the survival rate of Catherine Creek stock. We PIT-tagged 20,950 BY 2001 Imnaha River stock and 20,820 BY 2001 Catherine Creek stock captive brood progeny in October 2002 as part of the CSS for MY 2003. At the time the fish were transferred from Lookingglass Hatchery to the acclimation site, the rates of mortality and tag loss for Imnaha River stock were 0.14% and 0.06%, respectively. Catherine Creek stock, during the same period, had rates of mortality and tag loss of 0.57% and 0.31%, respectively. There was slightly elevated mortality, primarily from BKD, in one raceway of Catherine Creek stock at Lookingglass Hatchery for BY 2001.« less

Diet composition and feeding periodicity of wild and hatchery subyearling Chinook salmon in Lake Ontario

USGS Publications Warehouse

Johnson, J. H.

2008-01-01

Diel feeding periodicity, daily ration, and diet composition of wild and hatchery subyearling Chinook salmon Oncorhynchus tshawytscha were examined in Lake Ontario and the Salmon River, New York. The diet of wild riverine salmon was composed mainly of aquatic invertebrates (63.4%), mostly ephemeropterans (25.8%), chiromomids (15.8%), and trichopterans (8.3%). The diet of riverine Chinook was more closely associated with the composition of drift samples rather than bottom samples, suggesting mid-water feeding. In Lake Ontario terrestrial invertebrates were more important in the diet of hatchery Chinook (49.0%) than wild salmon (30.5%) and diet overlap between hatchery and wild salmon was low (0.46%). The diet of both hatchery and wild Chinook salmon was more closely associated with the composition of mid-water invertebrate samples rather than benthic core samples, indicating mid-water and surface feeding. Hatchery Chinook salmon consumed significantly less food (P < 0.05) than wild Chinook salmon in the lake and in the river, and wild salmon from Lake Ontario consumed more food than wild salmon in the Salmon River. Peak feeding of wild Chinook salmon occurred between 1200-1600 hours in Lake Ontario and between 1600-2000 hours in the Salmon River; there was no discernable feeding peak for the hatchery Chinook in Lake Ontario. Hatchery Chinook salmon also had the least diverse diet over the 24-hour sample period. These results suggest that at 7 days post-stocking hatchery Chinook salmon had not yet fully adapted to their new environment.

Salmon Life Cycle Models Illuminate Population Consequences of Disparate Survival and Behavior Between Hatchery- and Wild-Origin Fish

NASA Astrophysics Data System (ADS)

Beakes, M.; Satterthwaite, W.; Petrik, C.; Hendrix, N.; Danner, E.; Lindley, S. T.

2016-02-01

In past decades there has been a heavy reliance on the production of hatchery-reared fish to supplement declining population numbers of Pacific salmon. In some cases, the benefits of hatchery supplementation have been negligible despite concerted long-term stocking efforts. The management and conservation of depressed salmon populations, via hatchery practices or otherwise, can be improved by expanding our understanding of the dissimilarities between hatchery and wild salmon and how each interacts with the environment. In this study we use a stage-structured salmon life-cycle model to explore the population consequences of disparate survival and behavior between hatchery and wild-origin fall-run Chinook Salmon (Oncorhynchus tshawytscha) in the California Central Valley. We couple empirically-based statistical functions with deterministic theoretical models to identify how environmental conditions (e.g., water temperature, flow) and habitat drive the survival and abundance of both hatchery and wild salmon as they integrate across riverscapes and cross marine and freshwater ecosystem boundaries during their life cycle. Results from this study suggest that hatchery practices can lead to dissimilar interactions between hatchery and wild salmon and the environmental conditions they experience. As such, the population dynamics of fall-run Chinook Salmon in the California Central Valley are partly dependent on the composition of individuals that make up their populations. In total, this study improves out ability to conserve imperiled salmonids by identifying mechanistic linkages between the natal origin of salmon, survival and behavior, and the environment at spatiotemporal scales relevant to salmon populations and fisheries management.

Comparing the Reproductive Success of Yakima River Hatchery- and Wild-Origin Spring Chinook; Yakima/Klickitat Fisheries Project Monitoring and Evaluation, 2004-2005 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schroder, S.L.; Pearsons, T.N.; Knudsen, C.M.

2005-05-01

A growing body of literature suggests that adult salmon produced by artificial culture are not as reproductively successful as wild fish when they spawn under natural conditions. Behavioral, morphological, and physiological divergences have been observed between hatchery and wild fish. These disparities are the likely proximate causes of the differences seen in the reproductive success of hatchery and wild salmonids. Two evolutionary paradigms have been proposed to explain why salmonids cultured in hatcheries are genetically and phenotypically different from wild cohorts. The first proposes that natural selection has been significantly relaxed in hatcheries. Consequently, fish that normally would have perishedmore » because of the possession of unsuitable traits are able to survive. If these traits have a genetic basis, they may become established in a hatchery population and cause its productivity to be less than expected if the fish are once again exposed to natural selection pressures. The second theorizes that environmental and social conditions in hatcheries are less variable than in the natural environment and that these conditions will remain relatively constant from one generation to the next. In this circumstance, selection for genetic traits that adapt fish to artificial culture will become prevalent in the population. Such traits may be mal-adaptive under natural conditions. Many of the studies that have compared the reproductive success (RS) of hatchery and wild fish, however, have used non-local hatchery fish that have experienced multiple generations of hatchery culture. Few efforts have been made where both the hatchery and wild fish have originated from the same population. When such studies have been performed differences in the competency of the fish to produce offspring have not been detected or are not as great as those expressed when non-local hatchery fish have been used. The hatchery spring Chinook produced by the Yakima Fisheries Project originated from wild fish returning to the upper Yakima River. When they return as adults, almost all of them will spawn naturally in the Yakima River. The offspring they produce are expected to augment the Yakima spring Chinook population. Whether such an increase will occur or how great it may be depends on two factors, the ability of hatchery fish to reproduce under natural conditions and the capacity of their offspring to survive to maturity. One of the objectives of the Yakima Fisheries Project is to determine whether the hatchery-origin adults produced by the project have experienced any reduction in their ability to reproduce under natural conditions. To accomplish that objective an observation stream was built in 2000 on the grounds of the Cle Elum Supplementation and Research Facility. Beginning in 2001 hatchery and wild spring Chinook from the upper Yakima River stock have been introduced into the stream and allowed to reproduce. Microsatellite DNA is used to establish the genetic relationships between the adults placed into the stream and fry that are produced by each population. Six populations consisting of mixtures of wild and hatchery fish have been placed into the stream. Pedigree assessments have been completed on five of them. These assessments have shown that the reproductive success in males is often twice as variable as that experienced by females. In the five populations so far examined; wild males (age 4 and 5) produced the most offspring. The success of comparable hatchery males relative to wild males ranged from 37% to 113%. Hatchery and wild males maturing as 3-yr-olds (jacks) and as 1- and 0-yr-olds (precocious males) were also used in the study populations. They were not as successful at producing offspring as the larger hatchery and wild males. During 2001 and 2002 two populations of hatchery and wild fish were placed into the observation stream each year. Each one occupied about half of the structure. In these populations wild females exhibited a superior capacity to deposit eggs. In addition, their eggs survived to the fry stage at higher rates. This survival advantage ranged from 1.9 to 11.7%. In 2003 the entire observation stream was made available to a single population of fish in an effort to reduce intrasexual competition among the females for redd locations. In this year, hatchery females were better at depositing eggs (12.5%) and their buried eggs also achieved a higher egg-to-fry survival rate (3.4%). This suggests that at low population levels hatchery females were as competent as wild fish in burying eggs and in producing fry. Although variation in the reproductive success of females was lower than that seen in males it could be quite variable. For example, coefficient of variation values calculated on female RS ranged from 34 to 77% in the populations we examined. Numerous factors may affect RS in females.« less

29 CFR 780.127 - Hatchery operations.

Code of Federal Regulations, 2010 CFR

2010-07-01

... POLICY OR INTERPRETATION NOT DIRECTLY RELATED TO REGULATIONS EXEMPTIONS APPLICABLE TO AGRICULTURE... of Agriculture Raising of Livestock, Bees, Fur-Bearing Animals, Or Poultry § 780.127 Hatchery operations. Hatchery operations incident to the breeding of poultry, whether performed in a rural or urban...

Smolt Monitoring at the Head of Lower Granite Reservoir and Lower Granite Dam; Smolt Monitoring by Federal and Non-Federal Entities, 2001-2002 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Buettner, Edwin W.; Putnam, Scott A.

This project monitored the daily passage of chinook salmon Oncorhynchus tshawytscha, steelhead trout O. mykiss, and sockeye salmon smolts O. nerka during the 2001 spring out-migration at migrant traps on the Snake River and Salmon River. In 2001 fish management agencies released significant numbers of hatchery chinook salmon and steelhead trout above Lower Granite Dam that were not marked with a fin clip or coded-wire tag. Generally, these fish were distinguishable from wild fish by the occurrence of fin erosion. Total annual hatchery chinook salmon catch at the Snake River trap was 11% of the 2000 numbers. The wild chinookmore » catch was 3% of the previous year's catch. Hatchery steelhead trout catch was 49% of 2000 numbers. Wild steelhead trout catch was 69% of 2000 numbers. The Snake River trap collected 28 age-0 chinook salmon. During 2001 the Snake River trap captured zero hatchery and zero wild/natural sockeye salmon and six hatchery coho salmon O. kisutch. Differences in trap catch between years are due to fluctuations not only in smolt production, but also differences in trap efficiency and duration of trap operation associated with flow. The significant reduction in catch during 2001 was due to a reduction in hatchery chinook production (60% of 2000 release) and due to extreme low flows. Trap operations began on March 11 and were terminated on June 29. The trap was out of operation for a total of two days due to mechanical failure or debris. Hatchery chinook salmon catch at the Salmon River trap was 47% and wild chinook salmon catch was 67% of 2000 numbers. The hatchery steelhead trout collection in 2001 was 178% of the 2000 numbers. Wild steelhead trout collection in 2001 was 145% of the previous year's catch. Trap operations began on March 11 and were terminated on June 8 due to the end of the smolt monitoring season. There were no days where the trap was out of operation due to high flow or debris. The decrease in hatchery chinook catch in 2001 was due to a reduction in hatchery production (39% of 2000 releases). The increase in hatchery and wild steelhead trap catch is due to the ability to operate the trap in the thalweg for a longer period of time because of the extreme low flow condition in 2001. Travel time (d) and migration rate (km/d) through Lower Granite Reservoir for PIT-tagged chinook salmon and steelhead trout marked at the head of the reservoir were affected by discharge. There were not enough hatchery and wild chinook salmon tagged at the Snake River trap in 2001 to allow migration rate/discharge analysis. For steelhead trout tagged at the Snake River trap, statistical analysis of 2001 data detected a significant relation between migration rate and Lower Granite Reservoir inflow discharge. For hatchery and wild steelhead trout, there was a 2.2-fold and a 1.5-fold increase in migration rate in, respectively, between 50 and 100 kcfs. Travel time and migration rate to Lower Granite Dam for fish marked at the Salmon River trap were calculated. Statistical analysis of the 2001 data detected a significant relation between migration rate and Lower Granite Reservoir inflow discharge for hatchery and wild chinook salmon and hatchery and wild steelhead trout. Migration rate increased 3.7-fold for hatchery chinook salmon and 2.5-fold for wild chinook salmon between 50 and 100 kcfs. For hatchery steelhead there was a 1.6-fold increase in migration rate, and for wild steelhead trout there was a 2.2-fold increase between 50 kcfs and 100 kcfs. Fish tagged with passive integrated transponder (PIT) tags at the Snake River trap were interrogated at four dams with PIT tag detection systems (Lower Granite, Little Goose, Lower Monumental, and McNary dams). Because of the addition of the fourth interrogation site (Lower Monumental) in 1993, cumulative interrogation data is not comparable with the prior five years (1988-1992). Cumulative interrogations at the four dams for fish marked at the Snake River trap were 86% for hatchery chinook, 70% for wild chinook, 71% for hatchery steelhead, and 89% for wild steelhead. Cumulative interrogations at the four dams for fish marked at the Salmon River trap were 74% for hatchery chinook, 83% for wild chinook salmon, 75% for hatchery steelhead trout, and 81% for wild steelhead trout.« less

78 FR 32378 - Endangered and Threatened Species; Take of Anadromous Fish

Federal Register 2010, 2011, 2012, 2013, 2014

2013-05-30

... proposed adult management program associated with spring Chinook salmon hatchery plans for major... be sent to Allyson Purcell, National Marine Fisheries Services, Salmon Management Division, 1201 N.E... should be directed to the National Marine Fisheries Services, Salmon Management Division, 1201 N.E. Lloyd...

33 CFR 211.6 - Rights which may be granted by the Secretary of the Army in river and harbor and flood control...

Code of Federal Regulations, 2010 CFR

2010-07-01

... covered into the Treasury to the credit of the appropriation or appropriations from which the costs of... and reservoirs in connection with fish and wildlife programs, fish hatcheries, and other fish-cultural...

Monitoring and Evaluation of Supplemented Spring Chinook Salmon and Life Histories of Wild Summer Steelhead in the Grande Ronde Basin, 2007 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Boe, Stephen J.; Crump, Carrie A.; Weldert, Rey L.

2009-04-10

This is the ninth annual report for a multi-year project designed to monitor and evaluate supplementation of endemic spring Chinook salmon in Catherine Creek and the upper Grande Ronde River. These two streams historically supported anadromous fish populations that provided significant tribal and non-tribal fisheries, but in recent years, have experienced severe declines in abundance. Conventional and captive broodstock supplementation methods are being used to restore these spring Chinook salmon populations. Spring Chinook salmon populations in Catherine Creek and the upper Grande Ronde River, and other streams in the Snake River Basin have experienced severe declines in abundance over themore » past two decades (Nehlsen et al. 1991). A supplementation program was initiated in Catherine Creek and the upper Grande Ronde River, incorporating the use of both captive and conventional broodstock methods, in order to prevent extinction in the short term and eventually rebuild populations. The captive broodstock component of the program (BPA Project 199801001) uses natural-origin parr collected by seining and reared to maturity at facilities near Seattle, Washington (Manchester Marine Laboratory) and Hood River, Oregon (Bonneville Hatchery). Spawning occurs at Bonneville Hatchery, and resulting progeny are reared in hatcheries. Shortly before outmigration in the spring, juveniles are transferred to acclimation facilities. After an acclimation period of about 2-4 weeks, volitional release begins. Any juveniles remaining after the volitional release period are forced out. The conventional broodstock component uses returning adults collected at traps near the spawning areas, transported to Lookingglass Hatchery near Elgin, Oregon, held, and later spawned. The resulting progeny are reared, acclimated, and released similar to the captive broodstock component. All progeny released receive one or more marks including a fin (adipose) clip, codedwire tag, PIT tag, or visual implant elastomer tag. The numbers of adults used for conventional broodstock are determined by an agreement among comanagers (Zimmerman and Patterson 2002). Activities for this project focus on two life stages of spring Chinook salmon: juveniles during the migration from freshwater to the ocean and adults during prespawning migration through the end of spawning. Life history, production, and genetics are monitored and used to evaluate program effectiveness.« less

Salmonid Gamete Preservation in the Snake River Basin, 2001 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Armstrong, Robyn; Kucera, Paul

2002-06-01

Steelhead (Oncorhynchus mykiss) and chinook salmon (Oncorhynchus tshawytscha) populations in the Northwest are decreasing. Genetic diversity is being lost at an alarming rate. Along with reduced population and genetic variability, the loss of biodiversity means a diminished environmental adaptability. The Nez Perce Tribe (Tribe) strives to ensure availability of genetic samples of the existing male salmonid population by establishing and maintaining a germplasm repository. The sampling strategy, initiated in 1992, has been to collect and preserve male salmon and steelhead genetic diversity across the geographic landscape by sampling within the major river subbasins in the Snake River basin, assuming amore » metapopulation structure existed historically. Gamete cryopreservation conserves genetic diversity in a germplasm repository, but is not a recovery action for listed fish species. The Tribe was funded in 2001 by the Bonneville Power Administration (BPA) and the U.S. Fish and Wildlife Service Lower Snake River Compensation Plan (LSRCP) to coordinate gene banking of male gametes from Endangered Species Act (ESA) listed steelhead and spring and summer chinook salmon in the Snake River basin. In 2001, a total of 398 viable chinook salmon semen samples from the Lostine River, Catherine Creek, upper Grande Ronde River, Lookingglass Hatchery (Imnaha River stock), Lake Creek, the South Fork Salmon River weir, Johnson Creek, Big Creek, Capehorn Creek, Marsh Creek, Pahsimeroi Hatchery, and Sawtooth Hatchery (upper Salmon River stock) were cryopreserved. Also, 295 samples of male steelhead gametes from Dworshak Hatchery, Fish Creek, Grande Ronde River, Little Sheep Creek, Pahsimeroi Hatchery and Oxbow Hatchery were also cryopreserved. The Grande Ronde chinook salmon captive broodstock program stores 680 cryopreserved samples at the University of Idaho as a long-term archive, half of the total samples. A total of 3,206 cryopreserved samples from Snake River basin steelhead and spring and summer chinook salmon, from 1992 through 2001, are stored in two independent locations at the University of Idaho (UI) and Washington State University (WSU). Two large freezer tanks are located at each university. Recommendations for future gene banking efforts include the need for establishment of a regional genome resource bank, an emphasis on cryopreserving wild unmarked fish, continued fertility trials, and genetic analysis on all fish represented in the germplasm repository.« less

Successful mitigation of viral disease based on a delayed exposure rearing strategy at a large-scale steelhead trout conservation hatchery

USGS Publications Warehouse

Breyta, R.; Samson, Corie; Blair, Marilyn; Black, Allison; Kurath, Gael

2015-01-01

In 2009, the largest steelhead trout conservation hatchery in the state of Idaho, Dworshak National Fish Hatchery (NFH), lost over 50% of the juvenile steelhead trout (Oncorhynchus mykiss) population being reared for release. The causative agent of this high mortality was the viral pathogen infectious hematopoietic necrosis virus (IHNV). This was neither the first nor the worst epidemic of IHNV to occur at the hatchery, but it was the worst in over a decade. Genetic analysis of IHNV isolates taken from juveniles suffering epidemic IHN disease in 2009 revealed that the virus was of the M group of IHNV viruses, known to have high virulence for trout. The water supply for steelhead trout rearing at Dworshak NFH is untreated water taken directly from the Clearwater River. Further genetic analysis of IHNV isolates from adults spawned in 2009 indicated that adult steelhead trout in the river (in the hatchery water supply) were the most probable transmission source for the epidemic IHN disease in the juvenile fish. Previously, Dworshak NFH had been able to gain access to reservoir water from behind the Dworshak Dam for nursery egg incubation and the earliest stage of fry rearing, which nearly eliminated incidence of IHN disease in that stage of rearing. Additionally, the nearby Clearwater State Fish Hatchery (SFH), which operates entirely with reservoir water, has never had a case of IHN disease in juvenile steelhead trout. Therefore, staff at Dworshak NFH sought and obtained access to a limited supply of reservoir water for the first few months of outdoor rearing of juvenile steelhead trout, beginning in 2010. This strategy delayed the exposure of juvenile steelhead trout to river water for several months. The effects of this program change were: drastic reduction in IHN disease in juvenile steelhead trout; interruption in the transmission of highly virulent M group IHNV from adult steelhead trout; no interruption in the transmission of low virulent U group IHNV from adult Chinook salmon; and a shift of IHNV types in adult fish spawned at Dworshak NFH in subsequent years from M to U group viruses. While juvenile steelhead trout may still be infected via exposure to IHNV in river water, the disruption of virulent M group IHNV has been successful in dramatically reducing IHN disease in steelhead trout every year since 2010.

Genetic adaptation to captivity can occur in a single generation

PubMed Central

Christie, Mark R.; Marine, Melanie L.; French, Rod A.; Blouin, Michael S.

2012-01-01

Captive breeding programs are widely used for the conservation and restoration of threatened and endangered species. Nevertheless, captive-born individuals frequently have reduced fitness when reintroduced into the wild. The mechanism for these fitness declines has remained elusive, but hypotheses include environmental effects of captive rearing, inbreeding among close relatives, relaxed natural selection, and unintentional domestication selection (adaptation to captivity). We used a multigenerational pedigree analysis to demonstrate that domestication selection can explain the precipitous decline in fitness observed in hatchery steelhead released into the Hood River in Oregon. After returning from the ocean, wild-born and first-generation hatchery fish were used as broodstock in the hatchery, and their offspring were released into the wild as smolts. First-generation hatchery fish had nearly double the lifetime reproductive success (measured as the number of returning adult offspring) when spawned in captivity compared with wild fish spawned under identical conditions, which is a clear demonstration of adaptation to captivity. We also documented a tradeoff among the wild-born broodstock: Those with the greatest fitness in a captive environment produced offspring that performed the worst in the wild. Specifically, captive-born individuals with five (the median) or more returning siblings (i.e., offspring of successful broodstock) averaged 0.62 returning offspring in the wild, whereas captive-born individuals with less than five siblings averaged 2.05 returning offspring in the wild. These results demonstrate that a single generation in captivity can result in a substantial response to selection on traits that are beneficial in captivity but severely maladaptive in the wild. PMID:22184236

Lower Granite Dam Smolt Monitoring Program, 2004-2005 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mensik, Fred; Rapp, Shawn; Ross Doug

2005-11-01

The 2004 fish collection season at Lower Granite Dam (LGR) was characterized by above average water temperatures, below average flows and spill, low levels of debris. The number of smolts collected for all species groups (with the exception of clipped and unclipped sockeye/kokanee) exceeded all previous collection numbers. With the continued release of unclipped supplementation chinook, steelhead and sockeye above LGR, we can not accurately distinguish wild chinook, wild steelhead and wild sockeye/kokanee from hatchery reared unclipped chinook and sockeye/kokanee in the sample. Wild steelhead can be identified from hatchery steelhead by the eroded dorsal and pectoral fins exhibited onmore » unclipped hatchery steelhead. The numbers in the wild columns beginning in 1998 include wild and unclipped hatchery origin smolts. This season a total of 11,787,539 juvenile salmonids was collected at LGR. Of these, 11,253,837 were transported to release sites below Bonneville Dam, 11,164,132 by barge and 89,705 by truck. An additional 501,395 fish were bypassed to the river due to over-capacity of the raceways and for research purposes. According to the PTAGIS database, 177,009 PIT-tagged fish were detected at LGR in 2004. Of these, 105,894 (59.8%) were bypassed through the PIT-tag diversion system, 69,130 (39.1%) were diverted to the raceways to be transported, 1,640 (0.9%) were diverted to the sample tank, sampled and then transported, 345 (0.2%) were undetected at any of the bypass, raceway or sample exit monitors.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Slatick, Emil; Gilbreath, Lyle G.; Harmon, Jerrel R.

The main functions of the National Marine Fisheries Service (NMFS) Aquaculture Task biologists and contractual scientists involved in the 1978 homing studies were primarily a surveillance of fish physiology, disease, and relative survival during culture in marine net-pens, to determine if there were any unusual factors that might affect imprinting and homing behavior. The studies were conducted with little background knowledge of the implications of disease and physiology on imprinting and homing in salmonids. The health status of the stocks was quite variable as could be expected. The Dworshak and Wells Hatcheries steelhead suffered from some early stresses in seawater,more » probably osmoregulatory. The incidences of latent BKD in the Wells and Chelan Hatcheries steelhead and Kooskia Hatchery spring chinook salmon were extremely high, and how these will affect survival in the ocean is not known. Gill enzyme activity in the Dworshak and Chelan Hatcheries steelhead at release was low. Of the steelhead, survival in the Tucannon Hatchery stock will probably be the highest, with Dworshak Hatchery stock the lowest. This report contains five previously published papers.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bouwes, Nick; Petrosky, Charlie; Schaller, Howard

The Comparative Survival Study (CSS) was initiated in 1996 as a multi-year program of the fishery agencies and tribes to estimate survival rates over different life stages for spring and summer chinook (hereafter, chinook) produced in major hatcheries in the Snake River basin and from selected hatcheries in the lower Columbia River. Much of the information evaluated in the CSS is derived from fish tagged with Passive Integrated Transponder (PIT) tags. A comparison of survival rates of chinook marked in two different regions (which differ in the number of dams chinook have to migrate through) provides insight into the effectsmore » of the Snake/Columbia hydroelectric system (hydrosystem). The CSS also compares the smolt-to-adult survival rates (SARs) for Snake River chinook that were transported versus those that migrated in-river to below Bonneville Dam. Additional comparisons can be made within in-river experiences as well comparison between the different collector projects from which smolts are transported. CSS also compares these survival rates for wild Snake River spring and summer chinook. These comparisons generate information regarding the relative effects of the current management actions used to recover this listed species.Scientists and managers have recently emphasized the importance of delayed hydrosystem mortality to long-term management decisions. Delayed hydrosystem mortality may be related to the smolts. experience in the Federal Columbia River Power System, and could occur for both smolts that migrate in-river and smolts that are transported. The CSS PIT tag information on in-river survival rates and smolt-to-adult survival rates (SARs) of transported and in-river fish are relevant to estimation of ''D'', which partially describes delayed hydrosystem mortality. ''D'', or differential delayed mortality, is the differential survival rate of transported fish relative to fish that migrate in-river, as measured from below Bonneville Dam to adults returning to Lower Granite Dam. A ''D'' equal to one indicates that there is no difference in survival rate after hydrosystem passage, while a ''D'' less than one indicates that transported smolts die at a greater rate after release, than smolts that have migrated through the hydrosystem. While the relative survival rates of transported and in-river migrants are important, the SARs must be also be sufficient to allow the salmon to persist and recover (Mundy et al. 1994). Decreased SARs could result from delayed hydrosystem mortality for either transported or in-river migrants, or both. Major objectives of CSS include: (1) development of a long-term index of transport SAR to in-river SAR for Snake River hatchery spring and summer chinook smolts measured at Lower Granite Dam; (2) develop a long-term index of survival rates from release of smolts at Snake River hatcheries to return of adults to the hatcheries; (3) compute and compare the overall SARs for selected upriver and downriver spring and summer chinook hatcheries; (4) begin a time series of SARs for use in hypothesis testing and in the regional long-term monitoring and evaluation program; (5) evaluate growth patterns of transported and in-river migrating smolts, and of upriver and downriver stocks. Primary CSS focus in this report for the 1997-1999 migration years included hatchery chinook tasks for objectives 1, 4 and 5.« less

Introgression and susceptibility to disease in a wild population of rainbow trout

USGS Publications Warehouse

Currens, K.P.; Hemmingsen, A.R.; French, R.A.; Buchanan, D.V.; Schreck, C.B.; Li, H.W.

1997-01-01

We examined susceptibility of wild rainbow trout Oncorhynchus mykiss from the Metolius River, a tributary of the Deschutes River, Oregon, to genetic introgression and ceratomyxosis as a result of stocking nonnative hatchery rainbow trout. Ceratomyxa shasta, an enzootic myxosporean parasite that can be lethal to nonnative hatchery rainbow trout, might have been limiting the interbreeding of hatchery and wild rainbow trout in the river. However, rainbow trout from the Metolius River had allozyme frequencies intermediate between those of wild and hatchery fish at LDH-B2* and sSOD-1*, two diagnostic genetic loci that allow the inland subspecies of rainbow trout to be distinguished from hatchery strains of coastal origin. They also had notable frequencies of ADA-1*85, an allele documented in hatchery rainbow trout but rarely seen in wild populations. We also found that rainbow trout in the Metolius River averaged 138.9 scales in the lateral series, intermediate between the counts for 9 coastal or nonnative hatchery populations, which always had fewer than 140 scales, and 10 inland populations, which always had more than 140 scales. Disease challenges revealed that rainbow trout from the Metolius River had much greater susceptibility to C. shasta than rainbow trout from the Deschutes River, which have genetic resistance to the lethal disease. Based on these data, we concluded that introgression with nonnative hatchery rainbow trout has reduced the abilities of wild rainbow trout in the Metolius River to survive when conditions for ceratomyxosis infection occur.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Berggren Thomas J.; Franzoni, Henry; Basham, Larry R.

The Comparative Survival Study (CSS) was initiated in 1996 as a multi-year program of the fishery agencies and tribes to estimate survival rates over different life stages for spring and summer chinook (hereafter, chinook) produced in major hatcheries in the Snake River basin and from selected hatcheries in the lower Columbia River. Much of the information evaluated in the CSS is derived from fish tagged with Passive Integrated Transponder (PIT) tags. A comparison of survival rates of chinook marked in two different regions (which differ in the number of dams chinook have to migrate through) provides insight into the effectsmore » of the Snake/Columbia hydroelectric system (hydrosystem). The CSS also compares the smolt-to-adult survival rates (SARs) for Snake River chinook that were transported versus those that migrated in-river to below Bonneville Dam. Additional comparisons can be made within in-river experiences as well comparison between the different collector projects from which smolts are transported. CSS also compares these survival rates for wild Snake River spring and summer chinook. These comparisons generate information regarding the relative effects of the current management actions used to recover this listed species. Scientists and managers have recently emphasized the importance of delayed hydrosystem mortality to long-term management decisions. Delayed hydrosystem mortality may be related to the smolts experience in the Federal Columbia River Power System, and could occur for both smolts that migrate in-river and smolts that are transported. The CSS PIT tag information on in-river survival rates and smolt-to-adult survival rates (SARs) of transported and in-river fish are relevant to estimation of ''D'', which partially describes delayed hydrosystem mortality. The parameter D is the differential survival rate of transported fish relative to fish that migrate in-river, as measured from below Bonneville Dam to adults returning to Lower Granite Dam. When D = 1, there is no difference in survival rate after hydrosystem passage. When D < 1, then transported smolts die at a greater rate after release below Bonneville Dam than smolts that have migrated in-river to below Bonneville Dam. While the relative survival rates of transported and in-river migrants are important, the SARs must be also be sufficient to allow the salmon to persist and recover (Mundy et al. 1994). Decreased SARs could result from delayed hydrosystem mortality for either transported or in-river migrants, or both. Major objectives of the CSS include: (1) development of a long-term index of transport SAR to in-river SAR for Snake River hatchery and wild spring and summer chinook smolts measured at Lower Granite Dam; (2) develop a long-term index of survival rates from release of smolts at Snake River hatcheries to return of adults to the hatcheries; (3) compute and compare the overall SARs for selected upriver and downriver spring and summer chinook hatchery and wild stocks; and (4) begin a time series of SARs for use in hypothesis testing and in the regional long-term monitoring and evaluation program. Primary CSS focus in this report is for wild and hatchery spring/summer chinook that outmigrated in 1997 to 2000 and returned in 2003. Another goal of CSS was to help resolve uncertainty concerning marking, handling and bypass effects associated with control fish used in National Marine Fisheries Service's (NMFS) transportation research and evaluation. Significant concern had been raised that the designated control groups, which were collected, marked and released at dams, did not experience the same conditions as the in-river migrants which were not collected and bypassed under existing management, and that the estimated ratios of SARs of transported fish to SARs of control fish may be biased (Mundy et al. 1994). Instead of marking at the dams, as traditionally done for NMFS transportation evaluations, CSS began marking sufficient numbers of fish at the hatcheries and defining in-river groups from the detection histories at the dams (e.g., total arrivals, never detected, detected one or more times).« less

Survival of vaccinated,feed-trained largemouth bass fry (Micropterus Salmoides Floridanus) during natural exposure to Flavobacterium columnare

USDA-ARS?s Scientific Manuscript database

Largemouth bass (Micropterus salmoides floridanus; Centrarchidae) are often reared in government hatchery programs, then stocked to supplement wild fish populations. After the eggs obtained from broodstock are hatched, fry are stocked into ponds to feed on zooplankton and other small invertebrates....

50 CFR 2.1 - Regional offices.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 50 Wildlife and Fisheries 1 2010-10-01 2010-10-01 false Regional offices. 2.1 Section 2.1 Wildlife... FIELD ORGANIZATION § 2.1 Regional offices. The program operations of the U.S. Fish and Wildlife Service..., endangered species stations, fishery assistance offices, national fish hatcheries, national wildlife refuges...

Genetic Monitoring and Evaluation Program for Supplemented Populations of Salmon and Steelhead in the Snake River Basin, 1990-1991 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Waples, Robin S.; Teel, David J.; Aebersold, Paul B.

This is the first report of research for an ongoing study to evaluate the genetic effects of using hatchery-reared fish to supplement natural populations of chinook salmon and steelhead in the Snake River Basin.

Grande Ronde Basin Spring Chinook Salmon Captive Broodstock Program, 2008 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hoffnagle, Timothy L.; Hair, Donald; Gee, Sally

2009-03-31

The Grande Ronde Basin Spring Chinook Salmon Captive Broodstock Program is designed to rapidly increase numbers of Chinook salmon in stocks that are in imminent danger of extirpation in Catherine Creek (CC), Lostine River (LR) and upper Grande Ronde River (GR). Natural parr are captured and reared to adulthood in captivity, spawned (within stocks) and their progeny reared to smoltification before being released into the natal stream of their parents. This program is co-managed by ODFW, National Marine Fisheries Service, Nez Perce Tribe and Confederated Tribes of the Umatilla Indian Reservation. Presmolt rearing was initially conducted at Lookingglass Fish Hatcherymore » (LFH) but parr collected in 2003 and later were reared at Wallowa Fish Hatchery (WFH). Post-smolt rearing is conducted at Bonneville Fish Hatchery (BOH - freshwater) and at Manchester Research Station (MRS - saltwater). The CC and LR programs are being terminated, as these populations have achieved the goal of a consistent return of 150 naturally spawning adults, so the 2005 brood year was the last brood year collected for theses populations. The Grande Ronde River program continued with 300 fish collected each year. Currently, we are attempting to collect 150 natural parr and incorporate 150 parr collected as eggs from females with low ELISA levels from the upper Grande Ronde River Conventional Hatchery Program. This is part of a comparison of two methods of obtaining fish for a captive broodstock program: natural fish vs. those spawned in captivity. In August 2007, we collected 152 parr (BY 2006) from the upper Grande Ronde River and also have 155 Grande Ronde River parr (BY 2006) that were hatched from eyed eggs at LFH. During 2008, we were unable to collect natural parr from the upper Grande Ronde River. Therefore, we obtained 300 fish from low ELISA females from the upper Grande Ronde River Conventional Program. In October 2008 we obtained 170 eyed eggs from the upper Grande Ronde river Conventional Hatchery Program. We will attempt to collect natural parr in August 2009. This year 752 fish were removed from the captive population: 629 fish survived to gamete production and 123 fish died from various causes prior to spawning. Growth of the Captive Broodstock fish was similar to previous years. The saltwater fish have grown more slowly than those reared in freshwater. A total of 720 fish were sorted as maturing and 629 (87.4%) of them survived to spawn. We collected gametes from 273 females and 350 males from the 2002-2006 brood years in 2008, using 111 spawning matrices and collected 474,187 green eggs (1,737 eggs/female). All ripe males were spawned and no semen was collected for cryo-preservation. Of the 474,187 eggs collected for the BY 2008 F1 generation, 448,373 (94.6%) survived to the eyed stage. 68,612 (15.3%) were culled from females with high ELISA OD values for BKD prevention. For BY 2007, we collected a total of 477,048 eggs from all three populations and 407,369 (85.4%) reached the eyed stage, while 95,024 eyed eggs (23.3%) were culled for BKD prevention. Eyed eggs were hatched at Lookingglass Fish Hatchery, producing 267,131 fry. As parr, 153,371 fish were coded-wire tagged (CWT). For the 2006 F1 brood year, we collected 177,890 eggs and 149,073 (83.8%) reached the eyed stage. 83,826 eyed eggs (56.2%) were culled at the eyed stage for BKD prevention. 61,044 fry were produced (93.6%), 53,688 (88 %) survived to smolt. There were 54 bacterial kidney disease (BKD) mortalities at BOH and MRS, combined in this reporting period. Overall, there were fewer BKD mortalities in 2008 due to a reduced number of fish coming into the Captive Broodstock Program and a shift away from collecting wild parr to using eyed eggs from low ELISA females from the Conventional Hatchery Program. Unknown causes of death accounted for 32 deaths at MRS and BOH, combined in 2008. We continually examine and modify the operations of the Captive Broodstock Program to make improvements wherever possible. We continue to have difficulty with prevention and treatment of BKD outbreaks and continue to use erythromycin and azithromycin to treat this disease. We are also continuing to investigate other possible treatments and prophylactic measures. To reduce the incidence of BKD in offspring of the Captive Broodstock Program, we continue to allow culling of eyed eggs from females with high BKD ELISA values (generally >0.800 OD units but the cull level varies annually, depending on the distribution of ELISA values, number of eggs collected, and management considerations). We are also using ultrasound to determine maturity and sex of fish early in the maturation process and are now able to determine maturity and sex of most maturing fish in early April. This allows us to transfer maturing fish from saltwater to freshwater at a more natural time, which should improve fecundity and egg quality of saltwater-reared fish.« less

50 CFR 70.3 - State cooperation in national fish hatchery area management.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 50 Wildlife and Fisheries 9 2013-10-01 2013-10-01 false State cooperation in national fish hatchery area management. 70.3 Section 70.3 Wildlife and Fisheries UNITED STATES FISH AND WILDLIFE SERVICE, DEPARTMENT OF THE INTERIOR (CONTINUED) MANAGEMENT OF FISHERIES CONSERVATION AREAS NATIONAL FISH HATCHERIES...

50 CFR 70.3 - State cooperation in national fish hatchery area management.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 50 Wildlife and Fisheries 9 2012-10-01 2012-10-01 false State cooperation in national fish hatchery area management. 70.3 Section 70.3 Wildlife and Fisheries UNITED STATES FISH AND WILDLIFE SERVICE, DEPARTMENT OF THE INTERIOR (CONTINUED) MANAGEMENT OF FISHERIES CONSERVATION AREAS NATIONAL FISH HATCHERIES...

50 CFR 70.3 - State cooperation in national fish hatchery area management.

Code of Federal Regulations, 2011 CFR

2011-10-01

... 50 Wildlife and Fisheries 8 2011-10-01 2011-10-01 false State cooperation in national fish hatchery area management. 70.3 Section 70.3 Wildlife and Fisheries UNITED STATES FISH AND WILDLIFE SERVICE, DEPARTMENT OF THE INTERIOR (CONTINUED) MANAGEMENT OF FISHERIES CONSERVATION AREAS NATIONAL FISH HATCHERIES...

50 CFR 70.3 - State cooperation in national fish hatchery area management.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 50 Wildlife and Fisheries 9 2014-10-01 2014-10-01 false State cooperation in national fish hatchery area management. 70.3 Section 70.3 Wildlife and Fisheries UNITED STATES FISH AND WILDLIFE SERVICE, DEPARTMENT OF THE INTERIOR (CONTINUED) MANAGEMENT OF FISHERIES CONSERVATION AREAS NATIONAL FISH HATCHERIES...

50 CFR 70.4 - Prohibited acts.

Code of Federal Regulations, 2010 CFR

2010-10-01

...) MANAGEMENT OF FISHERIES CONSERVATION AREAS NATIONAL FISH HATCHERIES § 70.4 Prohibited acts. (a) The... aquatic animal on any national fish hatchery area is prohibited except as may be authorized under the..., capture, or take any animal on any national fish hatchery area is prohibited except as may be authorized...

50 CFR 70.4 - Prohibited acts.

Code of Federal Regulations, 2012 CFR

2012-10-01

...) MANAGEMENT OF FISHERIES CONSERVATION AREAS NATIONAL FISH HATCHERIES § 70.4 Prohibited acts. (a) The... aquatic animal on any national fish hatchery area is prohibited except as may be authorized under the..., capture, or take any animal on any national fish hatchery area is prohibited except as may be authorized...

50 CFR 70.4 - Prohibited acts.

Code of Federal Regulations, 2014 CFR

2014-10-01

...) MANAGEMENT OF FISHERIES CONSERVATION AREAS NATIONAL FISH HATCHERIES § 70.4 Prohibited acts. (a) The... aquatic animal on any national fish hatchery area is prohibited except as may be authorized under the..., capture, or take any animal on any national fish hatchery area is prohibited except as may be authorized...

50 CFR 70.4 - Prohibited acts.

Code of Federal Regulations, 2011 CFR

2011-10-01

...) MANAGEMENT OF FISHERIES CONSERVATION AREAS NATIONAL FISH HATCHERIES § 70.4 Prohibited acts. (a) The... aquatic animal on any national fish hatchery area is prohibited except as may be authorized under the..., capture, or take any animal on any national fish hatchery area is prohibited except as may be authorized...

50 CFR 70.4 - Prohibited acts.

Code of Federal Regulations, 2013 CFR

2013-10-01

...) MANAGEMENT OF FISHERIES CONSERVATION AREAS NATIONAL FISH HATCHERIES § 70.4 Prohibited acts. (a) The... aquatic animal on any national fish hatchery area is prohibited except as may be authorized under the..., capture, or take any animal on any national fish hatchery area is prohibited except as may be authorized...

75 FR 60804 - Nimbus Hatchery Fish Passage Project, Lower American River, California

Federal Register 2010, 2011, 2012, 2013, 2014

2010-10-01

... DEPARTMENT OF THE INTERIOR Bureau of Reclamation Nimbus Hatchery Fish Passage Project, Lower... Act (CEQA), the Bureau of Reclamation, the lead Federal agency, and the California Department of Fish... Draft EIS/EIR for the Nimbus Hatchery Fish Passage Project (Project). The purpose of the Project is to...

50 CFR 70.3 - State cooperation in national fish hatchery area management.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 50 Wildlife and Fisheries 6 2010-10-01 2010-10-01 false State cooperation in national fish hatchery area management. 70.3 Section 70.3 Wildlife and Fisheries UNITED STATES FISH AND WILDLIFE SERVICE, DEPARTMENT OF THE INTERIOR (CONTINUED) MANAGEMENT OF FISHERIES CONSERVATION AREAS NATIONAL FISH HATCHERIES...

Bioenergetics estimate of the effects of stocking density on hatchery production of smallmouth bass fingerlings

USGS Publications Warehouse

Robel, G.L.; Fisher, W.L.

1999-01-01

Production of and consumption by hatchery-reared tingerling (age-0) smallmouth bass Micropterus dolomieu at various simulated stocking densities were estimated with a bioenergetics model. Fish growth rates and pond water temperatures during the 1996 growing season at two hatcheries in Oklahoma were used in the model. Fish growth and simulated consumption and production differed greatly between the two hatcheries, probably because of differences in pond fertilization and mortality rates. Our results suggest that appropriate stocking density depends largely on prey availability as affected by pond fertilization and on fingerling mortality rates. The bioenergetics model provided a useful tool for estimating production at various stocking density rates. However, verification of physiological parameters for age-0 fish of hatchery-reared species is needed.

Distinguishing between natural and hatchery Snake River fall Chinook salmon subyearlings in the field using body morphology

USGS Publications Warehouse

Tiffan, K.F.; Connor, W.P.

2011-01-01

We used body morphology to distinguish between natural- and hatchery-origin subyearling fall Chinook salmon Oncorhynchus tshawytscha in rearing areas of the Snake River and at a downstream dam during seaward migration. Using subjective eye and body shape characteristics, field personnel correctly classified 88.9–100% of natural subyearlings (N = 626) and 90.0–100% of hatchery subyearlings (N = 867) in rearing areas from 2001 to 2008. The morphological characteristics used by these personnel proved to have a quantitative basis, as was shown by digital photography and principal components analysis. Natural subyearlings had smaller eyes and pupils, smaller heads, deeper bodies, and shorter caudal peduncles than their hatchery counterparts during rearing and at the dam. A discriminant function fitted from this set of morphological characteristics classified the origin of fish during rearing and at the dam with over 97% accuracy. We hypothesize that these morphological differences were primarily due to environmental influences during incubation and rearing because it is highly probable that a large portion of the natural juveniles we studied were the offspring of hatchery × hatchery mating in the wild. The findings in this paper might provide guidance for others seeking to differentiate between natural and hatchery fish.

Passing a seawater challenge test is not indicative of hatchery-reared Atlantic salmon Salmo salar smolts performing as well at sea as their naturally produced conspecifics.

PubMed

Jensen, A J; Berg, M; Bremset, G; Finstad, B; Hvidsten, N A; Jensås, J G; Johnsen, B O; Lund, E

2016-06-01

Despite satisfactory reactions to seawater challenge tests indicative of appropriate physiological state, hatchery-reared Atlantic salmon Salmo salar smolts stocked in the Eira River in Norway between 2001 and 2011 performed less well at sea in terms of growth, age at maturity and survival than smolts of natural origin. The mean rates of return to the river for hatchery-reared and naturally produced S. salar were 0·98 and 2·35%. In the Eira River, c. 50 000 hatchery-reared S. salar smolts of local origin were stocked annually to compensate for reduced natural smolt production following regulation for hydroelectric purposes, while a mean of 17 262 smolts were produced naturally in the river. This study demonstrates that, although captive S. salar perform well in seawater challenge tests, hatchery-reared smolts are not necessarily as adaptable to marine life as their naturally produced counterparts. These findings suggest that production of hatchery-reared smolts more similar to naturally produced individuals in morphology, physiology and behaviour will be necessary to improve success of hatchery releases. Where possible, supplementary or alternative measures, including habitat restoration, could be implemented to ensure the long-term viability of wild stocks. © 2016 The Fisheries Society of the British Isles.

Prevalence of Rentbacterium salmoninarum in juvenile spring chinook salmon at Columbia and Snake river hatcheries, 1993-1996

USGS Publications Warehouse

VanderKooi, S.P.; Maule, A.G.

1999-01-01

We monitored the prevalence and severity of Renibacterium salmoninarum (RS) infections in juvenile hatchery spring chinook salmon Oncorhynchus tshawytscha at eight Columbia and Snake river hatcheries from 1993 through 1996. This study followed a prior study that monitored RS in the same hatcheries from 1988 through 1992. In the current study, we found that the prevalence of RS-positive fish declined at two hatcheries relative to the preceding 5 years. Prevalence dropped from near 90% in 1992 to below 50% at both sites by 1993 and was less than 20% at three locations in 1995. In contrast, prevalence increased at four of seven sites in 1993 and six of seven sites in 1994. This indicated that previously reported declines in RS prevalence at these locations might have been temporary. Our results showed that in 1993 the majority of fish at all monitored hatcheries had low RS-antigen levels and remained that way at most locations through 1996. These results suggest that certain hatchery practices may limit the severity of RS infections. Although elevations at two sites in 1994 and 1995 indicate reductions in RS were temporary in the short term, long-term monitoring will undoubtedly be required given the many factors that influence disease processes.

Survival of hatchery Gulf sturgeon (Acipenser oxyrinchus desotoi Mitchill, 1815) in the Suwannee River, Florida: a 19-year evaluation

USGS Publications Warehouse

Sulak, Kenneth J.; Randall, Michael T.; Clugston, James P.

2014-01-01

An experimental release of 1192 hatchery-reared, individually PIT tagged, 220 days old (296–337 mm TL) Gulf sturgeon, Acipenser oxyrinchus desotoi, was undertaken in 1992 in the Suwannee River, Florida. The original objectives of the 1992 release experiment were to: (1) evaluate survival rate of cultured Gulf sturgeon in the wild vs survival rate of their wild 1992 cohort counterparts, (2) determine the differential effect of release site within the river upon long-term survival, and (3) evaluate comparative growth rates of recaptured hatchery vs captured wild 1992 cohort Gulf sturgeon. The present investigation addressed those original objectives, plus an additional fourth objective: (4) evaluation of hatchery fish recapture rate change over the 19-year experiment. The primary objective was to determine efficacy of potential conservation aquaculture for this species in terms of long-term survival in the wild. Follow-up 1993–2011 gill net sampling in freshwater reaches (rkm 4–237) and the estuarine river mouth (rkm −6 to 4) yielded recaptures representing 13.0% of the total released. Mean annual hatchery fish mortality (including emigration) rate estimated for the 19-year period (1993–2011) was more than twice that for same cohort wild fish. Mark-recapture survival probability (phi) for hatchery fish, 1993–2011, was substantially lower (0.733) than for their wild counterparts (0.888). Mean annual hatchery fish recapture rate, as a percentage of all 1992 cohort fish recaptures, declined significantly after age-7, coinciding with age of onset of migration into the open Gulf of Mexico. Hypothesized causal factors may be differentially lower fitness in the marine habitat or permanent outmigration due to natal river imprinting failure. Hatchery fish recapture rates varied significantly for fish from the ten release sites, being highest near the river mouth, and lowest for the furthest upriver sites in the Suwannee River and its Santa Fe River tributary. Hatchery fish also displayed a significantly lower growth rate than their wild counterparts through age 3000 days. Cumulative hatchery fish mortality of 99.87% over 19 years predicts <3 individuals would have survived through 2011. From the results of the 1992 release experiment, hatchery supplementation as a Gulf sturgeon conservation measure does not appear to be an effective option.

Smolt Monitoring at the Head of Lower Granite Reservoir and Lower Granite Dam, 2002 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Buettner, Edwin W.; Putnam, Scott A.

This project monitored the daily passage of Chinook salmon Oncorhynchus tshawytscha, steelhead trout O. mykiss, and sockeye salmon smolts O. nerka during the 2002 spring out-migration at migrant traps on the Snake River and Salmon River. In 2002 fish management agencies released significant numbers of hatchery Chinook salmon and steelhead trout above Lower Granite Dam that were not marked with a fin clip or coded-wire tag. Generally, these fish were distinguishable from wild fish by the occurrence of fin erosion. Total annual hatchery Chinook salmon catch at the Snake River trap was 11.4 times greater in 2002 than in 2001.more » The wild Chinook catch was 15.5 times greater than the previous year. Hatchery steelhead trout catch was 2.9 times greater than in 2001. Wild steelhead trout catch was 2.8 times greater than the previous year. The Snake River trap collected 3,996 age-0 Chinook salmon of unknown rearing. During 2002, the Snake River trap captured 69 hatchery and 235 wild/natural sockeye salmon and 114 hatchery coho salmon O. kisutch. Differences in trap catch between years are due to fluctuations not only in smolt production, but also differences in trap efficiency and duration of trap operation associated with flow. The significant increase in catch in 2002 was due to a 3.1 fold increase in hatchery Chinook production and a more normal spring runoff. Trap operations began on March 10 and were terminated on June 7. The trap was out of operation for a total of four days due to mechanical failure or debris. Hatchery Chinook salmon catch at the Salmon River trap was 4.2 times greater and wild Chinook salmon catch was 2.4 times greater than in 2001. The hatchery steelhead trout collection in 2002 was 81% of the 2001 numbers. Wild steelhead trout collection in 2002 was 81% of the previous year's catch. Trap operations began on March 10 and were terminated on May 29 due to high flows. The trap was out of operation for four days due to high flow or debris. The increase in hatchery Chinook catch in 2002 was due to a 3.1 fold increase in hatchery production and differences in flow between years. Changes in hatchery and wild steelhead catch are probably due to differences in flow between years. Travel time (d) and migration rate (km/d) through Lower Granite Reservoir for PIT-tagged Chinook salmon and steelhead trout marked at the Snake River trap were affected by discharge. Statistical analysis of 2002 data detected a relation between migration rate and discharge for hatchery and wild Chinook salmon. For hatchery and wild Chinook salmon there was a 4.7-fold and a 3.7-fold increase in migration rate, respectively, between 50 and 100 kcfs. For steelhead trout tagged at the Snake River trap, statistical analysis detected a significant relation between migration rate and Lower Granite Reservoir inflow discharge. For hatchery and wild steelhead trout, there was a 1.8-fold and a 1.7-fold increase in migration rate, respectively, between 50 and 100 kcfs. Travel time and migration rate to Lower Granite Dam for fish marked at the Salmon River trap were calculated. Statistical analysis of the 2002 data detected a significant relation between migration rate and Lower Granite Reservoir inflow discharge for wild Chinook salmon and hatchery steelhead trout. The analysis was unable to detect a relation between migration rate and discharge for hatchery Chinook salmon. The lack of a detectable relation was probably a result of the migration rate data being spread over a very narrow range of discharge. Not enough data were available to perform the analysis for wild steelhead trout. Migration rate increased 4.3-fold for wild Chinook salmon and 2.2-fold for hatchery steelhead between 50 kcfs and 100 kcfs. Fish tagged with passive integrated transponder (PIT) tags at the Snake River trap were interrogated at four dams with PIT tag detection systems (Lower Granite, Little Goose, Lower Monumental, and McNary dams). Because of the addition of the fourth interrogation site (Lower Monumental) in 1993 and the installation of the Removable Spillway Weir at Lower Granite Dam in 2000, caution must be used in comparing cumulative interrogation data. Cumulative interrogations at the four dams for fish marked at the Snake River trap were 61% for hatchery Chinook, 68% for wild Chinook, 58% for hatchery steelhead, and 62% for wild steelhead. Cumulative interrogations at the four dams for fish marked at the Salmon River trap were 51% for hatchery Chinook, 59% for wild Chinook salmon, 45% for hatchery steelhead trout, and 54% for wild steelhead trout. Cumulative interrogations were significantly lower in 2002 than in previous years with similar flow.« less

Evidence for competition at sea between Norton Sound chum salmon and Asian hatchery chum salmon

USGS Publications Warehouse

Ruggerone, Gregory T.; Agler, B.A.; Nielsen, Jennifer L.

2012-01-01

Increasing production of hatchery salmon over the past four decades has led to concerns about possible density-dependent effects on wild Pacific salmon populations in the North Pacific Ocean. The concern arises because salmon from distant regions overlap in the ocean, and wild salmon populations having low productivity may compete for food with abundant hatchery populations. We tested the hypothesis that adult length-at-age, age-at-maturation, productivity, and abundance of a Norton Sound, Alaska, chum salmon population were influenced by Asian hatchery chum salmon, which have become exceptionally abundant and surpassed the abundance of wild chum salmon in the North Pacific beginning in the early 1980s. We found that smaller adult length-at-age, delayed age-at-maturation, and reduced productivity and abundance of the Norton Sound salmon population were associated with greater production of Asian hatchery chum salmon since 1965. Modeling of the density-dependent relationship, while controlling for other influential variables, indicated that an increase in adult hatchery chum salmon abundance from 10 million to 80 million adult fish led to a 72% reduction in the abundance of the wild chum salmon population. These findings indicate that competition with hatchery chum salmon contributed to the low productivity and abundance of Norton Sound chum salmon, which includes several stocks that are classified as Stocks of Concern by the State of Alaska. This study provides new evidence indicating that large-scale hatchery production may influence body size, age-at-maturation, productivity and abundance of a distant wild salmon population.

A comparison of the survival and migratory behavior of hatchery-reared and naturally reared steelhead smolts in the Alsea river and estuary, Oregon, using acoustic telemetry

EPA Science Inventory

We tracked three groups of steelhead Oncorhynchus mykiss smolts implanted with acoustic transmitters to determine whether the degree of hatchery domestication or the juvenile rearing environment (hatchery raceway versus natural stream) influenced migration timing and survival in ...

Occurrence, size, and tag retention of sneaker male hatchery rainbow trout

USGS Publications Warehouse

Isely, J.J.; Grabowski, T.B.

2004-01-01

One alternative reproductive tactic involving early-maturing, cryptic males is referred to as "sneaking." Although sneakers tend to be easily detectable upon close inspection, little is known about the proportion of a fish population consisting of sneakers. We examined 15,400 age-1 rainbow trout Oncorhynchus mykiss in a hatchery. Total length (mm), wet weight (g), and sex (sneaker male or unknown) were recorded for each fish. We also individually tagged each sneaker male with soft visual implant alphanumeric (VIalpha) tags that were sequentially numbered and held the fish for 25 d before inspection. Sneakers constituted 2.8% of the hatchery rainbow trout population and were smaller in total length and weight than typical rainbow trout of the same age. Retention of the VIalpha tags in sneakers was 58.9%, significantly lower than has been reported under similar circumstances. We found that sneaker males may contribute substantially to hatchery populations. Reduced tag retention in sneakers may bias studies evaluating the effect of hatchery fish on wild populations. We believe that hatchery-produced sneaker males have the potential to contribute importantly to the genetic composition of wild populations.

Flood inundation maps and water-surface profiles for tropical storm Irene and selected annual exceedance probability floods for Flint Brook and the Third Branch White River in Roxbury, Vermont

USGS Publications Warehouse

Ahearn, Elizabeth A.; Lombard, Pamela J.

2014-01-01

Flint Brook, a tributary to the Third Branch White River in Roxbury, Vermont, has a history of flooding the Vermont Fish and Wildlife Department’s Roxbury Fish Culture Station (the hatchery) and surrounding infrastructure. Flooding resulting from tropical storm Irene on August 28–29, 2011, caused widespread destruction in the region, including extensive and costly damages to the State-owned hatchery and the transportation infrastructure in the Town of Roxbury, Vermont. Sections of State Route 12A were washed out, and several bridges and culverts on Oxbow Road, Thurston Hill Road, and the New England Central Railroad in Roxbury were heavily damaged. Record high peak-discharge estimates of 2,140 cubic feet per second (ft3/s) and 4,320 ft3/s were calculated for Flint Brook at its confluence with the Third Branch White River and for the Third Branch White River at about 350 feet (ft) downstream from the hatchery, respectively. The annual exceedance probabilities (AEPs) of the peak discharges for Flint Brook and the Third Branch White River were less than 0.2 percent (less than a one in 500 chance of occurring in a given year). Hydrologic and hydraulic analyses of Flint Brook and the Third Branch White River were done to investigate flooding at the hatchery in Roxbury and support efforts by the Federal Emergency Management Agency to assist State and local mitigation and reconstruction efforts. During the August 2011 flood, the majority of flow from Flint Brook (97 percent or 2,070 ft3/s) diverged from its primary watercourse due to a retaining wall failure immediately upstream of Oxbow Road and inundated the hatchery. Although a minor amount of flow from the Third Branch White River could have overtopped State Route 12A and spilled into the hatchery, the Third Branch White River did not cause flood damages or exacerbate flooding at the hatchery during the August 2011 flood. The Third Branch White River which flows adjacent to the hatchery does not flood the hatchery for the 10-, 2-, 1, or 0.2-percent annual exceedance probabilities. The simulated water-surface elevations for August 2011 flood equal the elevations of State Route 12A about 500 ft downstream of Thurston Hill Road adjacent to the troughs between the rearing ponds. Four flood mitigation alternatives being considered by the Vermont Agency of Transportation to improve the hydraulic performance of Flint Brook and reduce the risk of flooding at the hatchery include: (A) no changes to the infrastructure or existing alignment of Flint Brook (existing conditions [2014]), (B) structural changes to the bridges and the existing retaining wall along Flint Brook, (C) realignment of Flint Brook to flow along the south side of Oxbow Road to accommodate larger stream discharges, and (D) a diversion channel for flows greater than 1-percent annual exceedance probability. Although the 10-, 2-, and 1-percent AEP floods do not flood the hatchery under alternative A (no changes to the infrastructure), the 0.2-percent AEP flow still poses a flooding threat to the hatchery because flow will continue to overtop the existing retaining wall and flood the hatchery. Under the other mitigation alternatives (B, C, and D) that include some variation of structural changes to bridges, a retaining wall, and (or) channel, the peak discharges for the 10-, 2-, 1-, and 0.2-percent annual exceedance probabilities do not flood the hatchery. Water-surface profiles and flood inundation maps of the August 2011 flood and the 10-, 2-, 1-, and 0.2-percent AEPs for four mitigation alternatives were developed for Flint Brook and the Third Branch White River in the vicinity of the hatchery and can be used by the Federal, State, and local agencies to better understand the potential for future flooding at the hatchery.

Effects of Domestication on Predation Mortality and Competitive Dominance; Yakima/Klickitat Fisheries Project Monitoring and Evaluation, 2004-2005 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pearsons, Todd N.; Fritts, Anthony L.; Scott, Jennifer L.

2005-05-01

This report is intended to satisfy two concurrent needs: (1) provide a contract deliverable from the Washington Department of Fish and Wildlife (WDFW) to the Bonneville Power Administration (BPA), with emphasis on identification of salient results of value to ongoing Yakima/Klickitat Fisheries Project (YKFP) planning, and (2) summarize results of research that have broader scientific relevance. This is the second of a series of progress reports that address the effects of hatchery domestication on predation mortality and competitive dominance in the upper Yakima River basin (Pearsons et al. 2004). This progress report summarizes data collected between January 1, 2004 andmore » December 31, 2004. Raising fish in hatcheries can cause unintended behavioral, physiological, or morphological changes in chinook salmon due to domestication selection. Domestication selection is defined by Busack and Currens 1995 as, ''changes in quantity, variety, or combination of alleles within a captive population or between a captive population and its source population in the wild as a result of selection in an artificial environment''. Selection in artificial environments could be due to intentional or artificial selection, biased sampling during some stage of culture, or unintentional selection (Busack and Currens 1995). Genetic changes can result in lowered survival in the natural environment (Reisenbichler and Rubin 1999). The goal of supplementation or conservation hatcheries is to produce fish that will integrate into natural populations. Conservation hatcheries attempt to minimize intentional or biased sampling so that the hatchery fish are similar to naturally produced fish. However, the selective pressures in hatcheries are dramatically different than in the wild, which can result in genetic differences between hatchery and wild fish. The selective pressures may be particularly prominent during the freshwater rearing stage where most mortality of wild fish occurs. The Yakima Fisheries Project is studying the effects of domestication on a variety of adult and juvenile traits of spring chinook salmon (Busack et al. 2003). The overall experimental design is to compare a variety of traits, across generations, from three lines of Yakima basin chinook, a hatchery control, supplementation line, and a wild control. The hatchery line was derived from wild upper Yakima broodstock and is only allowed to spawn in the hatchery. The supplementation line is upper Yakima stock that spawns in the upper Yakima River. This stock is an integration of wild and hatchery supplementation fish. Starting in 2005, we plan to use a wild control line of fish that will be the offspring of wild broodstock collected in the Naches River system, a tributary to the Yakima River. The Naches River is not stocked with hatchery fish, and there is minimal stray from Upper Yakima supplementation, so we believe that these will serve as a control to compare any genotypic changes in the hatchery and the supplementation line. As generations of fish are tested, we believe we will be able to analyze the data using an analysis of covariance to test the hypothesis that the hatchery line will exhibit greater domestication over generations, the wild line will remain at baseline levels, and the supplementation line will be somewhere in between. In this report, we have used the terms ''hatchery'' or ''supplementation'' to refer to upper Yakima fish that are progeny of fish that spent one generation in the hatchery, and ''wild'' to refer to fish that have had no exposure to the hatchery other than the matings for this experiment. The terms are relative to the parents that produced the fish for these experiments. All progeny of these fish were mated and reared under the same laboratory conditions. This report addresses two juvenile traits: predation mortality, and competitive dominance. Other traits will be presented in other project reports. It is anticipated that it will take at least two to five generations to detect measurable responses in many domestication response variables (Busack et al. 2003). This report addresses domestication after one generation of hatchery rearing. This report is organized into two chapters that represent major topics associated with monitoring hatchery domestication. Chapter 1 reports the results of domestication on predation mortality of juvenile spring chinook salmon. Chapter 2 describes the affects of domestication on competitive dominance of juvenile spring chinook salmon. The chapters in this report are in various stages of development and should be considered preliminary unless they have been published in a peer-reviewed journal. Additional field work and/or analysis is in progress for topics covered in this report. Throughout this report, a premium was placed on presenting data in tables so that other interested parties could have access to the data.« less

Effects of Domestication on Predation Mortality and Competitive Dominance; Yakima/Klickitat Fisheries Project Monitoring and Evaluation Report 2 of 7, 2003-2004 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pearsons, Todd N.; Fritts, Anthony L.; Scott, Jennifer L.

2004-05-01

This report is intended to satisfy two concurrent needs: (1) provide a contract deliverable from the Washington Department of Fish and Wildlife (WDFW) to the Bonneville Power Administration (BPA), with emphasis on identification of salient results of value to ongoing Yakima/Klickitat Fisheries Project (YKFP) planning, and (2) summarize results of research that have broader scientific relevance. This is the first of a series of progress reports that address the effects of hatchery domestication on predation mortality and competitive dominance in the upper Yakima River basin. This progress report summarizes data collected between January 1, 2003 and December 31, 2003. Raisingmore » fish in hatcheries can cause unintended behavioral, physiological, or morphological changes in chinook salmon due to domestication selection. Domestication selection is defined by Busack and Currens 1995 as, ''changes in quantity, variety, or combination of alleles within a captive population or between a captive population and its source population in the wild as a result of selection in an artificial environment''. Selection in artificial environments could be due to intentional or artificial selection, biased sampling during some stage of culture, or unintentional selection (Busack and Currens 1995). Genetic changes can result in lowered survival in the natural environment (Reisenbichler and Rubin 1999). The goal of supplementation or conservation hatcheries is to produce fish that will integrate into natural populations. Conservation hatcheries attempt to minimize intentional or biased sampling so that the hatchery fish are similar to naturally produced fish. However, the selective pressures in hatcheries are dramatically different than in the wild, which can result in genetic differences between hatchery and wild fish. The selective pressures may be particularly prominent during the freshwater rearing stage where most mortality of wild fish occurs. The Yakima Fisheries Project is studying the effects of domestication on a variety of adult and juvenile traits of spring chinook salmon (Busack et al. 2003). The overall experimental design is to compare a variety of traits, across generations, from three lines of Yakima basin chinook, a hatchery control, supplementation line, and a wild control. The hatchery line was derived from wild upper Yakima broodstock and is only allowed to spawn in the hatchery. The supplementation line is upper Yakima stock that spawns in the upper Yakima River. This stock is an integration of wild and hatchery supplementation fish. Starting in 2005, we plan to use a wild control line of fish that will be the offspring of wild broodstock collected in the Naches River system, a tributary to the Yakima River. The Naches River is not stocked with hatchery fish, and there is minimal stray from Upper Yakima supplementation, so we believe that these will serve as a control to compare any genotypic changes in the hatchery and the supplementation line. As generations of fish are tested, we believe we will be able to analyze the data using an analysis of covariance to test the hypothesis that the hatchery line will exhibit greater domestication over generations, the wild line will remain at baseline levels, and the supplementation line will be somewhere in between. In this report, we have used the terms ''hatchery'' or ''supplementation'' to refer to upper Yakima fish that are progeny of fish that spent one generation in the hatchery, and ''wild'' to refer to fish that have had no exposure to the hatchery other than the matings for this experiment. The terms are relative to the parents that produced the fish for these experiments. All progeny of these fish were mated and reared under the same laboratory conditions. This report addresses two juvenile traits: predation mortality, and competitive dominance. Other traits will be presented in other project reports. It is anticipated that it will take at least two to five generations to detect measurable responses in many domestication response variables (Busack et al. 2003). This report addresses domestication after one generation of hatchery rearing. This report is organized into two chapters that represent major topics associated with monitoring hatchery domestication. Chapter 1 reports the results of domestication on predation mortality of juvenile spring chinook salmon. Chapter 2 describes the affects of domestication on competitive dominance of juvenile spring chinook salmon. The chapters in this report are in various stages of development and should be considered preliminary unless they have been published in a peer-reviewed journal. Additional field work and/or analysis is in progress for topics covered in this report. Throughout this report, a premium was placed on presenting data in tables so that other interested parties could have access to the data.« less

Genetic Diversity and Structure Analysis of Percocypris pingi (Cypriniformes: Cyprinidae): Implications for Conservation and Hatchery Release in the Yalong River

PubMed Central

Yang, Kun; Gan, Weixiong; Zeng, Rukui; Deng, Longjun; Song, Zhaobin

2016-01-01

Percocypris pingi is a near threatened cyprinid species, which has suffered a dramatic decline due to anthropogenic factors. As one response to this decline, hatchery release for P. pingi has been conducted in the lower reaches of the Yalong River since 2012. To understand the conservation status of this species and the potential impact of the release of hatchery-reared fish, we studied the genetic diversity and population structure of wild and hatchery populations of P. pingi. Two hatchery populations (Jinping [JPH] and Ya’an [YAH]) and two wild populations (Muli [MLW] and Woluo [WLW]) of P. pingi were analyzed based on microsatellite markers and the mitochondrial DNA control region. The results showed that P. pingi possesses moderate levels of genetic diversity, with observed heterozygosities ranging from 0.657 to 0.770 and nucleotide diversities ranging from 0.00212 to 0.00491. Our results also suggested WLW harbors considerable proportions of genetic diversity in this species and serves as a refuge for P. pingi during anthropogenic disturbance, thus playing an important role for the conservation of P. pingi populations. Microsatellite and mitochondrial markers both indicated close genetic relationships between YAH and MLW, JPH and WLW, respectively. The results to some extent reflected the geographical provenances for original broodstocks of the two hatchery populations, which provide some practical guidance for hatchery release of P. pingi. The existence of remarkable genetic divergence distributed along limited geographical range (approximately 10 kilometers) suggests the two wild populations should be regarded at least as two distinct evolutionary significant units (ESUs) and management units (MUs). Considering reduced intra-population genetic variation in hatchery population for release and significant genetic compositions of the two hatchery populations, some appropriate breeding strategies were proposed to benefit conservation of P. pingi. PMID:27911911

Summary of Migration and Survival Data from Radio-Tagged Juvenile Coho Salmon in the Trinity River, Northern California, 2008

USGS Publications Warehouse

Beeman, John W.; Hansel, Hal; Juhnke, Steve; Stutzer, Greg

2009-01-01

The survival of hatchery-origin juvenile coho salmon from the Trinity River Hatchery was estimated as they migrated seaward through the Trinity and Klamath Rivers. The purpose of the study was to collect data for comparison to a similar study in the Klamath River and provide data to the Trinity River Restoration Program. A total of 200 fish fitted with radio transmitters were released into the Trinity River near the hatchery (river kilometer 252 from the mouth of the Klamath River) biweekly from March 19 to May 28, 2008. Fish from the earliest release groups took longer to pass the first detection site 10 kilometers downstream of the hatchery than fish from the later release groups, but travel times between subsequent sites were often similar among the release groups. The travel times of individuals through the 239 kilometer study area ranged from 15.5 to 84.6 days with a median of 43.3 days. The data and models did not support differences in survival among release groups, but did support differences among river reaches. The probability of survival in the first 53 kilometers was lower than in the reaches farther downstream, which is similar to trends in juvenile coho salmon in the Klamath River. The lowest estimated survival in this study was in the first 10 kilometers from release in the Trinity River (0.676 SE 0.036) and the highest estimated survival was in the final 20 kilometer reach in the Klamath River (0.987 SE 0.013). Estimated survivals of radio-tagged juvenile coho salmon from release to Klamath River kilometer 33 were 0.639 per 100 kilometers for Trinity River fish and 0.721 per 100 kilometers for Klamath River fish.

Pathogen Screening of Naturally Produced Yakima River Spring Chinook Smolts; Yakima/Klickitat Fisheries Project Monitoring and Evaluation, 2001 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pearsons, Todd N.; Thomas, Joan B.

2003-01-01

The change in pathogens prevalence to wild fish is probably the least studied ecological interaction associated with hatchery operations. In 1999, the Cle Elum Hatchery began releasing spring chinook smolts into the upper Yakima River to increase natural production. Part of the evaluation of this program is to evaluate whether introduction of hatchery produced smolts would impact the prevalence of specific pathogens in the naturally produced spring chinook smolts. Increases in prevalence of any of these pathogens could negatively impact the survival of these fish. Approximately 200 smolts were collected at the Chandler smolt collection facility on the lower Yakimamore » River during 1998, 2000 and 2001 and monitored for specific pathogens. The pathogens monitored were infectious hematopoeitic necrosis virus, infectious pancreatic necrosis virus, viral hemorrhagic septicemia, Flavobacterium psychrophilum, Flavobacterium columnare, Aeromonas salmonicida, Yersinia ruckeri, Edwardsiella ictaluri, Renibacterium salmoninarum and Myxobolus cerebralis. In addition, the fish were tested for Ceratomyxa shasta spores in 2001. Not all testing has been completed for every year, but to date, there have only been minimal changes in levels of the bacterial pathogens in the naturally produced smolts. At this point, due to the limited testing so far, these changes are attributed to normal fluctuation of prevalence.« less

Smolt Monitoring at the Head of Lower Granite Reservoir and Lower Granite Dam, 2004 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Buettner, Edwin W.; Putnam, Scott A.

This project monitored the daily passage of Chinook salmon Oncorhynchus tshawytscha, steelhead trout O. mykiss, and sockeye salmon O. nerka smolts during the 2004 spring out-migration at migrant traps on the Snake River and Salmon River. In 2004 fish management agencies released significant numbers of hatchery Chinook salmon and steelhead trout above Lower Granite Dam that were not marked with a fin clip or coded-wire tag. Generally, these fish were distinguishable from wild fish by the occurrence of fin erosion. Total annual hatchery Chinook salmon catch at the Snake River trap was 1.1 times greater in 2004 than in 2003.more » The wild Chinook catch was 1.1 times greater than the previous year. Hatchery steelhead trout catch was 1.2 times greater than in 2003. Wild steelhead trout catch was 1.6 times greater than the previous year. The Snake River trap collected 978 age-0 Chinook salmon of unknown rearing. During 2004, the Snake River trap captured 23 hatchery and 18 wild/natural sockeye salmon and 60 coho salmon O. kisutch of unknown rearing. Differences in trap catch between years are due to fluctuations not only in smolt production, but also differences in trap efficiency and duration of trap operation associated with flow. Trap operations began on March 7 and were terminated on June 4. The trap was out of operation for a total of zero days due to mechanical failure or debris. Hatchery Chinook salmon catch at the Salmon River trap was 10.8% less and wild Chinook salmon catch was 19.0% less than in 2003. The hatchery steelhead trout collection in 2004 was 20.0% less and wild steelhead trout collection was 22.3% less than the previous year. Trap operations began on March 7 and were terminated on May 28 due to high flows. There were two days when the trap was taken out of service because wild Chinook catch was very low, hatchery Chinook catch was very high, and the weekly quota of PIT tagged hatchery Chinook had been met. Travel time (d) and migration rate (km/d) through Lower Granite Reservoir for PIT-tagged Chinook salmon and steelhead trout marked at the Snake River trap were affected by discharge. Statistical analysis of 2004 data detected a relation between migration rate and discharge for wild Chinook salmon but was unable to detect a relation for hatchery Chinook. The inability to detect a migration rate discharge relation for hatchery Chinook salmon was caused by age-0 fall Chinook being mixed in with the age 1 Chinook. Age-0 fall Chinook migrate much slower than age-1 Chinook, which would confuse the ability to detect the migration rate discharge relation. When several groups, which consisted of significant numbers of age-0 Chinook salmon, were removed from the analysis a relation was detected. For hatchery and wild Chinook salmon there was a 2.8-fold and a 2.4-fold increase in migration rate, respectively, between 50 and 100 kcfs. For steelhead trout tagged at the Snake River trap, statistical analysis detected a significant relation between migration rate and Lower Granite Reservoir inflow discharge. For hatchery and wild steelhead trout, there was a 2.3-fold and a 2.0-fold increase in migration rate, respectively, between 50 and 100 kcfs. Travel time and migration rate to Lower Granite Dam for fish marked at the Salmon River trap were calculated. Statistical analysis of the 2004 data detected a significant relation between migration rate and Lower Granite Reservoir inflow discharge for hatchery Chinook salmon, wild Chinook salmon and hatchery steelhead trout. Not enough data were available to perform the analysis for wild steelhead trout. Migration rate increased 7.0-fold for hatchery Chinook salmon, 4.7-fold for wild Chinook salmon and 3.8-fold for hatchery steelhead as discharge increased between 50 kcfs and 100 kcfs. Fish tagged with passive integrated transponder (PIT) tags at the Snake River and Salmon River traps were interrogated at four dams with PIT tag detection systems (Lower Granite, Little Goose, Lower Monumental, and McNary dams). Because of the addition of the fourth interrogation site (Lower Monumental) in 1993 and the installation of the Removable Spillway Weir at Lower Granite Dam in 2001, caution must be used in comparing cumulative interrogation data. Cumulative interrogations at the four dams for fish marked at the Snake River trap were 82% for hatchery Chinook, 77% for wild Chinook, 90% for hatchery steelhead, and 90% for wild steelhead. Cumulative interrogations at the four dams for fish marked at the Salmon River trap were 68% for hatchery Chinook, 70% for wild Chinook salmon, 80% for hatchery steelhead trout, and 79% for wild steelhead trout.« less

Differences in survival and growth in hatchery and stream environments, and in maturation of residuls in a stream, between progeny of hatchery and wild steelhead (Study sites: Brushy Fork Creek and Dworshak Hatchery; Stocks:Dworshak hatchery and Fish Creek wild; Year classes: 1992 and 1993): Chapter 1

USGS Publications Warehouse

Rubin, Stephen P.; Reisenbichler, Reginald R.; Wetzel, Lisa A.; Hensleigh, Jay E.; Leonetti,; Rubin, Stephen P.; Reisenbichler, Reginald R.; Wetzel, Lisa A.; Hayes, Michael C.

2012-01-01

Freshwater survival in hatchery and natural rearing environments was compared between progeny of hatchery (H) and wild (W) steelhead Oncorhynchus mykiss from the Clearwater River drainage in Idaho. Adults from Dworshak National Fish Hatchery and wild adults from Fish Creek fish were artificially spawned, and their progeny were genetically marked at the PEPA allozyme locus and released together as unfed fry in production facilities at the hatchery and in Brushy Fork Creek, also in the Clearwater River drainage, in a common garden design. Survival was higher for H than for W progeny at the hatchery but lower for H than for W progeny in Brushy Fork, indicating reduced fitness of the hatchery population for natural rearing and suggesting domestication as the cause. Survival at the hatchery was lower than is typical due to disease outbreaks. Survival of the first year-class of experimental fish to smolt release was only 18%. Survival of H fish was 3.8 times that of W fish under these poor survival conditions. All fish from the second year-class died halfway through the scheduled 10 month rearing period. Survival of H fish was 5.2 times that of W fish to when 1% of the initial fry were still alive indicating that W fish succumbed to the epizootic sooner than did H fish. Emigrants from the Brushy Fork study reach were sampled for three years and fish residing in the study reach were sampled for six years following fry release. Most emigrants were one or two years old and too small to be smolts (mean fork length at age-2 = 93 mm). Survival in Brushy Fork was lower for H than for W fish of the first year-class. Survival of the second year-class was higher for H than for W fish during the first two months in the stream but was lower for H than for W fish thereafter, and net survival from release to ages 3 and older was also lower for H than for W fish if our emigrant samples were representative (periods of inoperative emigrant traps prevented certainty about this). Differences between progeny groups were also found for growth (H>W) and condition (H>W) in the hatchery and downstream migration success of hatchery-reared fish after release (H>W), and for growth (HW for the other), condition (H>W), downstream dispersal (H>W for one year-class; H=W for the other), and maturation of residuals (ovaries weight was greater for H than for W females at ages 4 and 5; testes weight was less for H than for W age-3 males of one year-class) in Brushy Fork. A thunderstorm-induced power outage interrupted flow to the incubation trays at the hatchery and compromised a major tenet of the common garden design for the second year-class, possibly contributing to the inconsistency in relative survivals in Brushy Fork between year-classes. The storm caused the incubation environment to differ between the stocks as a result of reduced oxygen levels and substantially higher densities for H alevins. This difference was illustrated by a 55% loss for H fish during the event, about twice that for W fish.

Supportive breeding boosts natural population abundance with minimal negative impacts on fitness of a wild population of Chinook salmon

PubMed Central

Hess, Maureen A; Rabe, Craig D; Vogel, Jason L; Stephenson, Jeff J; Nelson, Doug D; Narum, Shawn R

2012-01-01

While supportive breeding programmes strive to minimize negative genetic impacts to populations, case studies have found evidence for reduced fitness of artificially produced individuals when they reproduce in the wild. Pedigrees of two complete generations were tracked with molecular markers to investigate differences in reproductive success (RS) of wild and hatchery-reared Chinook salmon spawning in the natural environment to address questions regarding the demographic and genetic impacts of supplementation to a natural population. Results show a demographic boost to the population from supplementation. On average, fish taken into the hatchery produced 4.7 times more adult offspring, and 1.3 times more adult grand-offspring than naturally reproducing fish. Of the wild and hatchery fish that successfully reproduced, we found no significant differences in RS between any comparisons, but hatchery-reared males typically had lower RS values than wild males. Mean relative reproductive success (RRS) for hatchery F1 females and males was 1.11 (P = 0.84) and 0.89 (P = 0.56), respectively. RRS of hatchery-reared fish (H) that mated in the wild with either hatchery or wild-origin (W) fish was generally equivalent to W × W matings. Mean RRS of H × W and H × H matings was 1.07 (P = 0.92) and 0.94 (P = 0.95), respectively. We conclude that fish chosen for hatchery rearing did not have a detectable negative impact on the fitness of wild fish by mating with them for a single generation. Results suggest that supplementation following similar management practices (e.g. 100% local, wild-origin brood stock) can successfully boost population size with minimal impacts on the fitness of salmon in the wild. PMID:23025818

Age of ground water in basalt aquifers near Spring Creek National Fish Hatchery, Skamania County, Washington

USGS Publications Warehouse

Hinkle, Stephen R.

1996-01-01

A comparison of CFC data with both adjusted and unadjusted 14C data suggests that water discharging at the hatchery springs contains a mixture of modem and old water, where old water is defined as water recharged prior to 1944. The CFC data support a component of modem water, whereas the 14C data suggest a component of old water. Similar results were obtained from a comparison of CFC data with adjusted and unadjusted 14C data for water collected from Well 3. Well 3 is north of the hatchery springs, on a flow path that appears to be parallel to and similar in length to the flow path leading to the hatchery springs. Water from the Hatchery Well, however, may be devoid of modem water and appears to have an overall age on the order of thousands of years.

Genetic variation in steelhead (Salmo gairdneri) from the north coast of Washington

USGS Publications Warehouse

Reisenbichler, R.R.; Phelps, S.R.

1989-01-01

Steelhead (Salmo gairdneri) collected from various sites in nine drainages in northwestern Washington were genetically characterized at 65 protein-coding loci by starch-gel electrophoresis. Genetic differentiation within and among drainages was not significant, and genetic variation among drainages was much less than that reported in British Columbia; these results may be the consequence of gene flow from hatchery stocks that have been released in Washington since the 1940's. Allele frequencies varied significantly among year-classes (hence, genetic characterization studies must include data from several year-classes), and also between hatchery fish (including a stock developed with local wild fish) and wild fish, indicating that few wild fish have been successfully and routinely included in hatchery brood stocks. Conservation of genetic diversity along the north coast of Washington should be facilitated by reducing the numbers of hatchery fish that spawn in streams and by including wild fish in hatchery brood stocks.

Smolt Monitoring at the Head of Lower Granite Reservoir and Lower Granite Dam, 2003 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Buettner, Edwin W.; Putnam, Scott A.

This project monitored the daily passage of Chinook salmon Oncorhynchus tshawytscha, steelhead trout O. mykiss, and sockeye salmon O. nerka smolts during the 2003 spring out-migration at migrant traps on the Snake River and Salmon River. In 2003 fish management agencies released significant numbers of hatchery Chinook salmon and steelhead trout above Lower Granite Dam that were not marked with a fin clip or coded-wire tag. Generally, these fish were distinguishable from wild fish by the occurrence of fin erosion. Total annual hatchery Chinook salmon catch at the Snake River trap was 2.1 times less in 2003 than in 2002.more » The wild Chinook catch was 1.1 times less than the previous year. Hatchery steelhead trout catch was 1.7 times less than in 2002. Wild steelhead trout catch was 2.1 times less than the previous year. The Snake River trap collected 579 age-0 Chinook salmon of unknown rearing. During 2003, the Snake River trap captured five hatchery and 13 wild/natural sockeye salmon and 36 coho salmon O. kisutch of unknown rearing. Differences in trap catch between years are due to fluctuations not only in smolt production, but also differences in trap efficiency and duration of trap operation associated with flow. The significant differences in catch between 2003 and the previous year were due mainly to low flows during much of the trapping season and then very high flows at the end of the season, which terminated the trapping season 12 days earlier than in 2002. Trap operations began on March 9 and were terminated on May 27. The trap was out of operation for a total of zero days due to mechanical failure or debris. Hatchery Chinook salmon catch at the Salmon River trap was 16.8% less and wild Chinook salmon catch was 1.7 times greater than in 2002. The hatchery steelhead trout collection in 2003 was 5.6% less than in 2002. Wild steelhead trout collection was 19.2% less than the previous year. Trap operations began on March 9 and were terminated on May 24 due to high flows. There were zero days when the trap was out of operation due to high flow or debris. The decrease in hatchery Chinook catch in 2003 was partially due to differences in flow between years because there was a 5.9% increase in hatchery production in the Salmon River drainage in 2003. The decrease in hatchery steelhead catch may be partially due to a 13% decrease in hatchery production in the Salmon River drainage in 2003. Travel time (d) and migration rate (km/d) through Lower Granite Reservoir for PIT-tagged Chinook salmon and steelhead trout marked at the Snake River trap were affected by discharge. Statistical analysis of 2003 data detected a relation between migration rate and discharge for wild Chinook salmon but was unable to detect a relation for hatchery Chinook. The inability to detect a migration rate discharge relation for hatchery Chinook was probably caused by age 0 fall Chinook being mixed in with the age 1 Chinook. Age 0 fall Chinook migrate much slower than age 1 Chinook, which would confuse the ability to detect the migration rate discharge relation. For wild Chinook salmon there was a 1.4-fold increase in migration rate, respectively, between 50 and 100 kcfs. For steelhead trout tagged at the Snake River trap, statistical analysis detected a significant relation between migration rate and Lower Granite Reservoir inflow discharge. For hatchery and wild steelhead trout, there was a 1.7-fold and a 1.9-fold increase in migration rate, respectively, between 50 and 100 kcfs. Travel time and migration rate to Lower Granite Dam for fish marked at the Salmon River trap were calculated. Statistical analysis of the 2003 data detected a significant relation between migration rate and Lower Granite Reservoir inflow discharge for hatchery Chinook salmon, wild Chinook salmon and hatchery steelhead trout. Not enough data were available to perform the analysis for wild steelhead trout. Migration rate increased 14-fold for hatchery Chinook salmon, 8.3-fold for wild Chinook salmon and 2.4-fold for hatchery steelhead as discharge increased between 50 kcfs and 100 kcfs. Fish tagged with passive integrated transponder (PIT) tags at the Snake River and Salmon River traps were interrogated at four dams with PIT tag detection systems (Lower Granite, Little Goose, Lower Monumental, and McNary dams). Because of the addition of the fourth interrogation site (Lower Monumental) in 1993 and the installation of the Removable Spillway Weir at Lower Granite Dam in 2001, caution must be used in comparing cumulative interrogation data. Cumulative interrogations at the four dams for fish marked at the Snake River trap were 65% for hatchery Chinook, 72% for wild Chinook, 66% for hatchery steelhead, and 67% for wild steelhead. Cumulative interrogations at the four dams for fish marked at the Salmon River trap were 48% for hatchery Chinook, 61% for wild Chinook salmon, 57% for hatchery steelhead trout, and 56% for wild steelhead trout.« less

Smolt Monitoring at the Head of Lower Granite Reservoir and Lower Granite Dam, 2005 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Buettner, Edwin W.; Putnam, Scott A.

This project monitored the daily passage of Chinook salmon Oncorhynchus tshawytscha, steelhead trout O. mykiss, and sockeye salmon O. nerka smolts during the 2005 spring out-migration at migrant traps on the Snake River and Salmon River. In 2005 fish management agencies released significant numbers of hatchery Chinook salmon and steelhead trout above Lower Granite Dam that were not marked with a fin clip or coded-wire tag. Generally, the age-1 and older fish were distinguishable from wild fish by the occurrence of fin erosion. Age-0 Chinook salmon are more difficult to distinguish between wild and non-adclipped hatchery fish and therefore classifiedmore » as unknown rearing. The total annual hatchery spring/summer Chinook salmon catch at the Snake River trap was 0.34 times greater in 2005 than in 2004. The wild spring/summer Chinook catch was 0.34 times less than the previous year. Hatchery steelhead trout catch was 0.67 times less than in 2004. Wild steelhead trout catch was 0.72 times less than the previous year. The Snake River trap collected 1,152 age-0 Chinook salmon of unknown rearing. During 2005, the Snake River trap captured 219 hatchery and 44 wild/natural sockeye salmon and 110 coho salmon O. kisutch of unknown rearing. Differences in trap catch between years are due to fluctuations not only in smolt production, but also differences in trap efficiency and duration of trap operation associated with flow. Trap operations began on March 6 and were terminated on June 3. The trap was out of operation for a total of one day due to heavy debris. FPC requested that the trap be restarted on June 15 through June 22 to collect and PIT tag age-0 Chinook salmon. Hatchery Chinook salmon catch at the Salmon River trap was 1.06 times greater and wild Chinook salmon catch was 1.26 times greater than in 2004. The hatchery steelhead trout collection in 2005 was 1.41 times greater and wild steelhead trout collection was 1.27 times greater than the previous year. Trap operations began on March 6 and were terminated on May 17 due to high flows. There were two days when the trap was taken out of service because of mechanical failure. Travel time (d) and migration rate (km/d) through Lower Granite Reservoir for passive integrated transponder (PIT) tagged Chinook salmon and steelhead trout marked at the Snake River trap were affected by discharge. Statistical analysis of 2005 data detected a relation between migration rate and discharge for hatchery Chinook but was unable to detect a relation for wild Chinook. The inability to detect a migration rate discharge relation for wild Chinook salmon was caused by a lack of data. For hatchery Chinook salmon there was a 1.8-fold increase in migration rate between 50 and 100 kcfs. For steelhead trout tagged at the Snake River trap, statistical analysis detected a significant relation between migration rate and lower Granite Reservoir inflow discharge. For hatchery and wild steelhead trout, there was a 2.2-fold and a 2.2-fold increase in migration rate, respectively, between 50 and 100 kcfs. Travel time and migration rate to Lower Granite Dam for fish marked at the Salmon River trap were calculated. Statistical analysis of the 2005 data detected a significant relation between migration rate and Lower Granite Reservoir inflow discharge for hatchery Chinook salmon, wild Chinook salmon, hatchery steelhead trout, and wild steelhead trout. Migration rate increased 4.2-fold for hatchery Chinook salmon, 2.9-fold for wild Chinook salmon and 2.5-fold for hatchery steelhead, and 1.7-fold for wild steelhead as discharge increased between 50 kcfs and 100 kcfs. Fish tagged with PIT tags at the Snake River and Salmon River traps were interrogated at four dams with PIT tag detection systems (Lower Granite, Little Goose, Lower Monumental and McNary dams). Because of the addition of the fourth interrogation site (Lower Monumental) in 1993 and the installation of the Removable Spillway Weir at Lower Granite Dam in 2001, caution must be used in comparing cumulative interrogation data. Cumulative interrogations at the four dams for fish marked at the Snake River trap were 84% for hatchery Chinook, 89% for wild Chinook, 94% for hatchery steelhead, and 93% for wild steelhead. Cumulative interrogations at the four dams for fish marked at the Salmon River trap were 71% for hatchery Chinook, 78% for wild Chinook salmon, 80% for hatchery steelhead trout, and 81% for wild steelhead trout.« less

Monitoring and Evaluation of Smolt Migration in the Columbia Basin : Volume XVI : Survival and Transportation Effects for Migrating Snake River Hatchery Chinook Salmon and Steelhead: Historical Estimates from 1996-2003.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Buchanan, Rebecca A.; Skalski, John R.

2007-12-07

In 2005, the University of Washington developed a new statistical model to analyze the combined juvenile and adult detection histories of PIT-tagged salmon migrating through the Federal Columbia River Power System (FCRPS). This model, implemented by software Program ROSTER (River-Ocean Survival and Transportation Effects Routine), has been used to estimate survival and transportation effects on large temporal and spatial scales for PIT-tagged hatchery spring and summer Chinook salmon and steelhead released in the Snake River Basin from 1996 to 2003. Those results are reported here. Annual estimates of the smolt-to-adult return ratio (SAR), juvenile inriver survival from Lower Granite tomore » Bonneville, the ocean return probability from Bonneville to Bonneville, and adult upriver survival from Bonneville to Lower Granite are reported. Annual estimates of transport-inriver (T/I) ratios and differential post-Bonneville mortality (D) are reported on both a systemwide basis, incorporating all transport dams analyzed, and a dam-specific basis. Transportation effects are estimated only for dams where at least 5,000 tagged smolts were transported from a given upstream release group. Because few tagged hatchery steelhead were transported in these years, no transportation effects are estimated for steelhead. Performance measures include age-1-ocean adult returns for steelhead, but not for Chinook salmon. Annual estimates of SAR from Lower Granite back to Lower Granite averaged 0.71% with a standard error (SE) of 0.18% for spring Chinook salmon from the Snake River Basin for tagged groups released from 1996 through 2003, omitting age-1-ocean (jack) returns. For summer Chinook salmon from the Snake River Basin, the estimates of annual SAR averaged 1.15% (SE=0.31%). Only for the release years 1999 and 2000 did the Chinook SAR approach the target value of 2%, identified by the NPCC as the minimum SAR necessary for recovery. Annual estimates of SAR for hatchery steelhead from the Snake River Basin averaged 0.45% (SE=0.11%), including age-1-ocean returns, for release years 1996 through 2003. For release years when the ocean return probability from Bonneville back to Bonneville could be estimated (i.e., 1999 through 2003), it was estimated that on average approximately 86% of the total integrated mortality for nontransported, tagged hatchery spring and summer Chinook, and 74% for steelhead, occurred during the ocean life stage (i.e., from Bonneville to Bonneville). This suggests that additional monitoring and research efforts should include the ocean and estuary environment. Annual estimates of the systemwide T/I are weighted averages of the dam-specific T/I ratios for each transport dam (with {ge} 5,000 tagged fish transported), weighted by the probabilities of being transported at each dam. The systemwide T/I compares the observed SAR under the existing transportation system with the expected SAR if the transportation system had not been operated. Estimates of 1.0 indicate that the systemwide transportation program has no effect on SAR, while estimates > 1.0 indicate that the transportation program increases SAR. Excluding the 2001 release group, the geometric mean of the systemwide T/I estimates for hatchery spring Chinook salmon from the Snake River Basin was 1.15 (SE=0.03) for release years 1997 through 2003. The geometric mean of the systemwide T/I estimates for hatchery summer Chinook salmon from the Snake River Basin was 1.28 (SE=0.13) for release years 1997 through 2000 and 2003. Estimates were much higher for the 2001 release groups. These estimates reflect transportation from Lower Granite and/or Little Goose for most release years, depending on the number of tagged smolts actually transported at each dam during each release year. Differential post-Bonneville mortality (D) is the ratio of post-Bonneville survival to Lower Granite Dam of transported fish to that of nontransported ('inriver') fish. Excluding the 2001 release year, the geometric mean of the D estimates for hatchery spring Chinook salmon from the Snake River Basin was 1.00 (SE=0.09) for release years 1997 through 2003. For hatchery summer Chinook salmon from the Snake River Basin, the geometric mean of the D estimates was 1.32 (SE=0.27) for release years 1997 through 2000 and 2003. These estimates reflect transportation from Lower Granite and/or Little Goose, depending on the number of tagged smolts actually transported at each dam during each release year. Approximately half the point estimates of D for both spring and summer Chinook salmon were 1.0 or greater, indicating that for those release groups, transported fish did not have lower ocean and adult survival than nontransported fish. For those years with estimates of D < 1.0, the systemwide T/I estimates were always {ge} 1.0, indicating that despite lower ocean and adult survival of transported fish, transportation did not lower SAR overall.« less

Evaluation of the behavior and movement of adult summer steelhead in the lower Cowlitz River, Washington, following collection and release, 2013-2014

USGS Publications Warehouse

Kock, Tobias J.; Liedtke, Theresa L.; Ekstrom, Brian K.; Gleizes, Chris; Dammers, Wolf

2014-01-01

Summer steelhead (Oncorhynchus mykiss) produced by a hatchery on the lower Cowlitz River, Washington, support a popular sport fishery during June–September each year. Many of these fish return to the Cowlitz Salmon Hatchery and are held until they are spawned in December. In the past, fishery managers have released some of the steelhead that return to the hatchery at downstream release sites (hereafter referred to as “recycled steelhead”) to increase angling opportunity. The recycling of summer steelhead is a potential use of hatchery fish that can benefit anglers in the lower Cowlitz River, provided these fish are harvested or return to the hatchery. However, recycled steelhead that are not removed from the river could compete against or spawn with wild winter steelhead, which would be a negative consequence of recycling. The Washington Department of Fish and Wildlife (WDFW) conducted an evaluation during 1998 and recycled 632 summer steelhead. They determined that 55 percent of the recycled steelhead returned to the hatchery and 15 percent of the fish were harvested by anglers. The remaining 30 percent of recycled fish were not known to have been removed from the river. Recycling has not occurred in recent years because definitive studies have not been conducted to determine the fate of the fish that remain in the lower Cowlitz River after being recycled. The U.S. Geological Survey and WDFW conducted a 2-year study during 2012–2014 to quantify recycled steelhead that (1) returned to the hatchery, (2) were captured by anglers, or (3) remained in the river. All recycled steelhead were marked with a Floy® tag and opercle punch, and 20 percent of the recycled fish were radio-tagged to determine post-release behavior and movement patterns, and to describe locations of tagged fish that remained in the river during the spawning period. During 2012–2013, we recycled 549 steelhead and determined that 50 percent of the fish returned to the hatchery, 18 percent of the fish were harvested by anglers, and 32 percent of the fish were not known to have been removed from the river. During October–December 2012, only 9 percent of the radio-tagged steelhead remained in the lower Cowlitz River and none of these fish entered tributaries monitored by fixed-telemetry sites. The second year of the evaluation was conducted during 2013–2014. A total of 502 steelhead were recycled during June–August and releases were conducted weekly with group sizes that ranged from 30 to 76 fish. Results from 2013–2014 were similar to results from 2012–2013. Fifty percent (251 fish) of the recycled steelhead returned to the hatchery, 20 percent (100 fish) were harvested by anglers, and 30 percent (151 fish) were unaccounted for. The median elapsed time from release to hatchery return was 13 days, and the median elapsed time from release to capture by an angler was 11 days. The percentage of unaccounted-for steelhead in the general population was moderately high (30 percent), but detection records of radio-tagged fish suggest that few recycled steelhead were present in the lower Cowlitz River during the spawning period. A total of 109 steelhead were radio-tagged during 2013–2014, and most of these fish (88 percent) moved upstream following release and entered the Trout Hatchery–Salmon Hatchery reach (river miles 44–51). The median elapsed time from release to reach entry was 4.6 days (range of 0.5–65.5 days). After fish entered this reach, they spent a considerable amount of time near the Cowlitz Trout Hatchery (median residence time of 16.7 hours) or Cowlitz Salmon Hatchery (median residence time of 146.3 hours), or they moved back and forth between these two sites. Thirty radio-tagged steelhead made at least two trips between the sites and some fish made as many as seven trips. Detection records showed that 61 percent (66 fish) of the radio-tagged fish returned to the hatchery reach and 21 percent (23 fish) of the fish were captured by anglers. The remaining 18 percent (20 fish) of the radio-tagged fish had various fates. One fish (less than 1 percent) left the Cowlitz River and nine fish (8 percent) died, were harvested, or spit their transmitter near boat launches in the river. The remaining 10 fish (9 percent) had the potential to interact with winter steelhead. Four tagged steelhead (4 percent) entered lower Cowlitz River tributaries (two fish in the Toutle River; two fish in Salmon Creek) during October and November, and five tagged fish (5 percent) were last detected in the lower Cowlitz River in October. One fish (less than 1 percent) was never detected after being released. We measured the diameter of opercle punches in recycled steelhead to determine the temporal effectiveness of these marks. A total of 116 opercle punches were measured—36 were measured at the time of tagging and 80 were measured when fish returned to the hatchery. Opercle punches remained open for less than 1 month. None of the fish that returned to the hatchery more than 30 days after release had opercle punches that were open. All recycled steelhead were marked with a Floy® tag and opercle punch. However, if a steelhead lost its Floy® tag and was captured by an angler, or returned to the hatchery more than 30 days after being recycled, it likely would not have been accurately identified as having been recycled because of regrowth of the opercle punch. During 2013–2014, at least 70 percent of the recycled steelhead were removed from the lower Cowlitz River by anglers, returned to the hatchery, or left the river. Radiotelemetry data indicated that a maximum of 9 percent of the radio-tagged fish remained in the lower Cowlitz River during the spawning period and only 4 percent of the radio-tagged fish entered tributaries where wild steelhead are known to spawn. These results are consistent with findings from previous studies. Overall, results from these studies suggest that about one-third of the recycled steelhead were not known to have been removed from the river. However, the radiotelemetry data indicated that only about 10 percent of the recycled steelhead were present in the lower Cowlitz River during late autumn and early winter, and few of those fish (0 in 2012–2013 and 4 in 2013–2014) entered tributaries where winter steelhead spawn. These results have management implications in the lower Cowlitz River where the risks and rewards of steelhead recycling will be weighed to determine the future of the recycling program.

Supplement Analysis for Yakima/Klickitat Fisheries Project, (DOE/EIS-0169-SA-05)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Smith, Patricia R.

2002-09-20

Yakima/Klickitat Fisheries Project – Under the Monitoring and Evaluation Program (M&E), the domestication selection research task would be modified to include a hatchery control line, maintained entirely by spawning hatchery-origin fish. The Bonneville Power Administration is funding ongoing studies, research, and artificial production of several salmonid species in the Yakima and Klickitat river basins. BPA analyzed environmental impacts of research and supplementation projects in the Yakima basin in an Environmental Impact Statement (EIS) completed in 1996 (USDOE/BPA 1996), and in the following Supplement Analyses: DOE/EIS-0169-SA-01, completed in May 1999; DOE/EIS-0169-SA-02, completed in August 1999; DOE/EIS-0169-SA-03, completed in 2000; DOE/EIS-0169-SA-04, completedmore » in November 2000. The purpose of this Supplement Analysis is to determine if a Supplemental EIS is needed to analyze the changes proposed in the Monitoring and Evaluation program (#199506325) of the Yakima Klickitat Fisheries Project (YKFP) as reviewed in the FY 2001 Project Proposals for the Columbia River Gorge and Inter-Mountain Provinces, ISRP 2000-9 (December 1, 2000). Modifications to the M&E program are in support of the experimental acclimation, rearing and incubating activities for spring chinook.« less

Wynoochee Hydropower/Fish Hatchery: Feasibility Report and Environmental Impact Statement.

DTIC Science & Technology

1982-09-30

Unresolved Issues. There are no unresolved issues associated with the Wynoochee hydropower/fish hatchery plan. 4. Relationship to Environmental...Requirements.l/ The relationship of the Wynoochee hydropower/fish hatchery plan to environmental requirements is summarized in the following table...Implementation of the plan would I/The relationship of the satellite fish station to the environmental requirements is not included in this discussion. Compliance

Kalispel Resident Fish Project : Tribal Hatchery Operations and Maintenance Annual Report, 2002.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nenema, David

2003-03-01

The Kalispel Tribal hatchery successfully spawned largemouth bass broodfish in spring 2002. Approximately 150,000 eggs were produced and hatched. These fry were started on brine shrimp for a period of ten days. At this time, the fry needed more abundance food supply. Cannibalism started and the hatchery staff transferred the remaining fry to the river in hopes that some fish would survive.

Environmental Controls of Oyster-Pathogenic Vibrio spp. in Oregon Estuaries and a Shellfish Hatchery

PubMed Central

Crump, Byron C.; Häse, Claudia C.; White, Angelicque E.

2018-01-01

ABSTRACT Vibrio spp. have been a persistent concern for coastal bivalve hatcheries, which are vulnerable to environmental pathogens in the seawater used for rearing larvae, yet the biogeochemical drivers of oyster-pathogenic Vibrio spp. in their planktonic state are poorly understood. Here, we present data tracking oyster-pathogenic Vibrio bacteria in Netarts Bay and Yaquina Bay in Oregon, USA, as well as in adjacent coastal waters and a local shellfish hatchery, through the 2015 upwelling season. Vibrio populations were quantified using a culture-independent approach of high-throughput Vibrio-specific 16S rRNA gene sequencing paired with droplet digital PCR, and abundances were analyzed in the context of local biogeochemistry. The most abundant putative pathogen in our samples was Vibrio coralliilyticus. Environmental concentrations of total Vibrio spp. and V. coralliilyticus were highest in Netarts Bay sediment samples and higher in seawater from Netarts Bay than from nearshore coastal waters or Yaquina Bay. In Netarts Bay, the highest V. coralliilyticus concentrations were observed during low tide, and abundances increased throughout the summer. We hypothesize that the warm shallow waters in estuarine mudflats facilitate the local growth of the V. coralliilyticus pathogen. Samples from larval oyster tanks in Whiskey Creek Shellfish Hatchery, which uses seawater pumped directly from Netarts Bay, contained significantly lower total Vibrio species concentrations, but roughly similar V. coralliilyticus concentrations, than did the bay water, resulting in a 30-fold increase in the relative abundance of the V. coralliilyticus pathogen in hatchery tanks. This suggests that the V. coralliilyticus pathogen is able to grow or persist under hatchery conditions. IMPORTANCE It has been argued that oyster-pathogenic Vibrio spp. have contributed to recent mortality events in U.S. shellfish hatcheries (R. A. Elston, H. Hasegawa, K. L. Humphrey, I. K. Polyak, and C. Häse, Dis Aquat Organ 82:119–134, 2008, https://doi.org/10.3354/dao01982); however, these events are often sporadic and unpredictable. The success of hatcheries is critically linked to the chemical and biological composition of inflowing seawater resources; thus, it is pertinent to understand the biogeochemical drivers of oyster-pathogenic Vibrio spp. in their planktonic state. Here, we show that Netarts Bay, the location of a local hatchery, is enriched in oyster-pathogenic V. coralliilyticus compared to coastal seawater, and we hypothesize that conditions in tidal flats promote the local growth of this pathogen. Furthermore, V. coralliilyticus appears to persist in seawater pumped into the local hatchery. These results improve our understanding of the ecology and environmental controls of the V. coralliilyticus pathogen and could be used to improve future aquaculture efforts, as multiple stressors impact hatchery success. PMID:29475863

Environmental Controls of Oyster-Pathogenic Vibrio spp. in Oregon Estuaries and a Shellfish Hatchery.

PubMed

Gradoville, Mary R; Crump, Byron C; Häse, Claudia C; White, Angelicque E

2018-05-01

Vibrio spp. have been a persistent concern for coastal bivalve hatcheries, which are vulnerable to environmental pathogens in the seawater used for rearing larvae, yet the biogeochemical drivers of oyster-pathogenic Vibrio spp. in their planktonic state are poorly understood. Here, we present data tracking oyster-pathogenic Vibrio bacteria in Netarts Bay and Yaquina Bay in Oregon, USA, as well as in adjacent coastal waters and a local shellfish hatchery, through the 2015 upwelling season. Vibrio populations were quantified using a culture-independent approach of high-throughput Vibrio- specific 16S rRNA gene sequencing paired with droplet digital PCR, and abundances were analyzed in the context of local biogeochemistry. The most abundant putative pathogen in our samples was Vibrio coralliilyticus Environmental concentrations of total Vibrio spp. and V. coralliilyticus were highest in Netarts Bay sediment samples and higher in seawater from Netarts Bay than from nearshore coastal waters or Yaquina Bay. In Netarts Bay, the highest V. coralliilyticus concentrations were observed during low tide, and abundances increased throughout the summer. We hypothesize that the warm shallow waters in estuarine mudflats facilitate the local growth of the V. coralliilyticus pathogen. Samples from larval oyster tanks in Whiskey Creek Shellfish Hatchery, which uses seawater pumped directly from Netarts Bay, contained significantly lower total Vibrio species concentrations, but roughly similar V. coralliilyticus concentrations, than did the bay water, resulting in a 30-fold increase in the relative abundance of the V. coralliilyticus pathogen in hatchery tanks. This suggests that the V. coralliilyticus pathogen is able to grow or persist under hatchery conditions. IMPORTANCE It has been argued that oyster-pathogenic Vibrio spp. have contributed to recent mortality events in U.S. shellfish hatcheries (R. A. Elston, H. Hasegawa, K. L. Humphrey, I. K. Polyak, and C. Häse, Dis Aquat Organ 82:119-134, 2008, https://doi.org/10.3354/dao01982); however, these events are often sporadic and unpredictable. The success of hatcheries is critically linked to the chemical and biological composition of inflowing seawater resources; thus, it is pertinent to understand the biogeochemical drivers of oyster-pathogenic Vibrio spp. in their planktonic state. Here, we show that Netarts Bay, the location of a local hatchery, is enriched in oyster-pathogenic V. coralliilyticus compared to coastal seawater, and we hypothesize that conditions in tidal flats promote the local growth of this pathogen. Furthermore, V. coralliilyticus appears to persist in seawater pumped into the local hatchery. These results improve our understanding of the ecology and environmental controls of the V. coralliilyticus pathogen and could be used to improve future aquaculture efforts, as multiple stressors impact hatchery success. Copyright © 2018 Gradoville et al.

An evaluation of trout culture

USGS Publications Warehouse

1940-01-01

In an evaluation of the efficiency of trout culture, the author presents a detailed analysis of complete loss records from 288 individual lots of trout at twenty-two hatcheries in the western United States. Summarized data are given to show the percentage loss of eggs, fry, and fingerlings by progressive one-half inch size groups. The accumulative percentage loss is also included to indicate the losses, under average hatchery conditions, between the egg stage and each successive size-group. These data cover the individual species of trout commonly reared in hatcheries; summarized data are given also for all species combined. A brief discussion of hatchery losses, natural losses, and the cost of artificial propagation is included.

Maladaptation and phenotypic mismatch in hatchery-reared Atlantic salmon Salmo salar released in the wild.

PubMed

Stringwell, R; Lock, A; Stutchbury, C J; Baggett, E; Taylor, J; Gough, P J; Garcia de Leaniz, C

2014-12-01

Changes in body shape, fluctuating asymmetry (FA) and crypsis were compared among Atlantic salmon Salmo salar fry kept as controls in captivity and those released and subsequently recaptured in the wild according to a before-after-control-impact (BACI) design. Hatchery fish that survived in the wild became more cryptic and displayed a much lower incidence of fin erosion and of asymmetric individuals than control fish kept in captivity. Significant differences in body shape were also apparent, and survivors had longer heads, thicker caudal peduncles and a more streamlined body shape than hatchery controls as early as 20 days following stocking, most likely as a result of phenotypic plasticity and non-random, selective mortality of maladapted phenotypes. Hatchery-reared fish typically perform poorly in the wild and the results of this study indicate that this may be due to phenotypic mismatch, i.e. because hatcheries generate fish that are phenotypically mismatched to the natural environment. © 2014 The Fisheries Society of the British Isles.

Evaluation of chemical control for nonnative crayfish at a warm-water fish production hatchery

USGS Publications Warehouse

Allert, Ann L.; McKee, M.J.; DiStefano, R.J.; Fairchild, J.F.

2016-01-01

Invasive crayfish are known to displace native crayfish species, alter aquatic habitat and community structure and function, and are serious pests for fish hatcheries. White River Crawfish (WRC; Procambarus acutus) were inadvertently introduced to a warm-water fish hatchery in Missouri, USA, possibly in an incoming fish shipment. We evaluated the use of chemical control for crayfish to ensure incoming and outgoing fish shipments from hatcheries do not contain live crayfish. We conducted acute (≤24 hr) static toxicity tests to determine potency, dose-response, and selectivity of pesticides to WRC, Virile Crayfish (VC; Orconectes virilis), and Fathead Minnow (FHM; Pimephales promelas). Testing identified a formulation of cypermethrin (Cynoff®) as the most potent of five pesticides evaluated for toxicity to crayfish. A 4-hr exposure to a cypermethrin concentration of 100 μg · L-1 was found to kill 100% of juvenile and adult WRC; however, adult VC were not consistently killed. Concentrations of cypermethrin ≤100 μg · L-1 did not cause significant (>10%) mortality in juvenile FHM. Additional testing is needed to examine selectivity between crayfish and hatchery fish species. Biosecurity protocols at hatcheries that use chemical control have the potential to reliably prevent inadvertent transfers of live crayfish in fish shipments.

Integrated Hatchery Operations Team: Operations Plans for Anadromous Fish Production Facilities in the Columbia River Basin, Volume IV of IV; Washington: Rocky Reach Hatchery Addendum, 1992 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Peck, Larry

1993-08-01

Rocky Reach Hatchery is located along the Columbia Paver, just downstream from Rocky Reach Dam. Site elevation is 800 feet above sea level. The Turtle Rock Island facility, located 2 miles upstream, is operated as a satellite facility (shared with the Washington Department of Wildlife). The facility is staffed with 2.75 FTE`S. The hatchery was originally designed as a mile-long spawning channel at Turtle Rock Island. Rearing units consist of eight vinyl raceways at Rocky Reach and four rearing ponds at Turtle Rock. Water rights are held by Chelan County PUD and total 3,613 gpm from the Columbia River. Watermore » available for use in the Turtle Rock rearing ponds averages 12,000 gpm from the Columbia River. Rocky Reach Hatchery and the Turtle Rock satellite facility are owned by Chelan County PUD. They are operated as mitigation facilities for the fishery impacts caused by the construction and operation of Rocky Reach Dam. Rocky Reach Hatchery is used for incubation and early rearing of upriver bright (URB) fall chinook. Fingerlings are later transferred to the Turtle Rock facility for final rearing and release.« less

Grande Ronde Basin Supplementation Program; Lostine River, 2000 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Onjukka, Sam T.; Harbeck, Jim

2003-03-01

The Northwest Power Planning Council (NPPC) identified supplementation as a high priority to achieve its goal of increasing runs of anadromous fish in the Columbia Basin. Supplementation activities in the Lostine River and associated monitoring and evaluation conducted by the Nez Perce Tribe relate directly to the needs addressed in the Columbia River Basin Fish and Wildlife Program (NPPC 1994). Measure 7.4L.1 of the Program mandates that appropriate research accompany any proposed supplementation. In addition, measure 7.3B.2 of the Program stresses the need for evaluating supplementation projects to assess their ability to increase production. Finally, Section 7.4D.3 encourages the studymore » of hatchery rearing and release strategies to improve survival and adaptation of cultured fish. In 1997, Oregon Department of Fisheries and Wildlife (ODFW) requested a modification of Permit 1011 to allow the take of adult spring chinook salmon. In 1998, the Nez Perce Tribe also requested a permit specific to activities on Lostine River. The permit was issued in 2000. A special condition in the permits required the development of a long term management plan for the spring chinook salmon of the Grande Ronde Basin. The Nez Perce Tribe, ODFW, and the Confederated Tribes of the Umatilla Indian Reservation (CTUIR) completed a formal long range plan entitled ''Grande Ronde Basin Endemic Spring Chinook Salmon Supplementation Program''. The program proposes to increase the survival of spring chinook salmon in the Grand Ronde Basin through hatchery intervention. Adult salmon from the Lostine River, Catherine Creek, and the Upper Grande Ronde River are used for a conventional supplementation program in the basin. The Nez Perce program currently operates under the ESA Section 10 Permit 1149.« less

Grande Ronde Basin Supplementation Program; Lostine River, 2001 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Onjukka, Sam T.; Harbeck, Jim

2003-03-01

The Northwest Power Planning Council (NPPC) identified supplementation as a high priority to achieve its goal of increasing runs of anadromous fish in the Columbia Basin. Supplementation activities in the Lostine River and associated monitoring and evaluation conducted by the Nez Perce Tribe relate directly to the needs addressed in the Columbia River Basin Fish and Wildlife Program (NPPC 1994). Measure 7.4L.1 of the Program mandates that appropriate research accompany any proposed supplementation. In addition, measure 7.3B.2 of the Program stresses the need for evaluating supplementation projects to assess their ability to increase production. Finally, Section 7.4D.3 encourages the studymore » of hatchery rearing and release strategies to improve survival and adaptation of cultured fish. In 1997, Oregon Department of Fisheries and Wildlife (ODFW) requested a modification of Permit 1011 to allow the take of adult spring chinook salmon. In 1998, the Nez Perce Tribe also requested a permit specific to activities on Lostine River. The permit was issued in 2000. A special condition in the permits required the development of a long term management plan for the spring chinook salmon of the Grande Ronde Basin. The Nez Perce Tribe, ODFW, and the Confederated Tribes of the Umatilla Indian Reservation (CTUIR) completed a formal long range plan entitled ''Grande Ronde Basin Endemic Spring Chinook Salmon Supplementation Program''. The program proposes to increase the survival of spring chinook salmon in the Grand Ronde Basin through hatchery intervention. Adult salmon from the Lostine River, Catherine Creek, and the Upper Grande Ronde River are used for a conventional supplementation program in the basin. The Nez Perce program currently operates under the ESA Section 10 Permit 1149.« less

Provenance of whitefish in the Gulf of Bothnia determined by elemental analysis of otolith cores

NASA Astrophysics Data System (ADS)

Lill, J.-O.; Finnäs, V.; Slotte, J. M. K.; Jokikokko, E.; Heimbrand, Y.; Hägerstrand, H.

2018-02-01

The strontium concentration in the core of otoliths was used to determine the provenance of whitefish found in the Gulf of Bothnia, Baltic Sea. To that end, a database of strontium concentration in fish otoliths representing different habitats (sea, river and fresh water) had to be built. Otoliths from juvenile whitefish were therefore collected from freshwater ponds at 5 hatcheries, from adult whitefish from 6 spawning sites at sea along the Finnish west coast, and from adult whitefish ascending to spawn in the Torne River, in total 67 otoliths. PIXE was applied to determine the elemental concentrations in these otoliths. While otoliths from the juveniles raised in the freshwater ponds showed low but varying strontium concentrations (194-1664 μg/g,), otoliths from sea-spawning fish showed high uniform strontium levels (3720-4333 μg/g). The otolith core analysis of whitefish from Torne River showed large variations in the strontium concentrations (1525-3650 μg/g). These otolith data form a database to be used for provenance studies of wild adult whitefish caught at sea. The applicability of the database was evaluated by analyzing the core of polished otoliths from 11 whitefish from a test site at sea in the Larsmo archipelago. Our results show that by analyzing strontium in the otolith core, we can differentiate between hatchery-origin and wild-origin whitefish, but not always between river and sea spawning whitefish.

Analysis of Salmon and Steelhead Supplementation, 1990 Final Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Miller, William H.; Coley, Travis C.; Burge, Howard L.

Supplementation or planting salmon and steelhead into various locations in the Columbia River drainage has occurred for over 100 years. All life stages, from eggs to adults, have been used by fishery managers in attempts to establish, rebuild, or maintain anadromous runs. This report summarizes and evaluates results of past and current supplementation of salmon and steelhead. Conclusions and recommendations are made concerning supplementation. Hatchery rearing conditions and stocking methods can affect post released survival of hatchery fish. Stress was considered by many biologists to be a key factor in survival of stocked anadromous fish. Smolts were the most commonmore » life stage released and size of smolts correlated positively with survival. Success of hatchery stockings of eggs and presmolts was found to be better if they are put into productive, underseeded habitats. Stocking time, method, species stocked, and environmental conditions of the receiving waters, including other fish species present, are factors to consider in supplementation programs. The unpublished supplementation literature was reviewed primarily by the authors of this report. Direct contact was made in person or by telephone and data compiled on a computer database. Areas covered included Oregon, Washington, Idaho, Alaska, California, British Columbia, and the New England states working with Atlantic salmon. Over 300 projects were reviewed and entered into a computer database. The database information is contained in Appendix A of this report. 6 refs., 9 figs., 21 tabs.« less

Titre distribution patterns of infectious haematopoietic necrosis virus in ovarian fluids of hatchery and feral salmon populations

USGS Publications Warehouse

Mulcahy, D.; Pascho, R.J.; Jenes, C.K.

1983-01-01

Infectious haematopoietic mecrosis virus (IHNV) is enzootic in virtually all populations of sockeye salmon, Oncorhynchus nerka (Walbaum), and in populations of chinook salmon, O. tshawytscha (Walbaum), of the Sacramento River drainage in California. This disease is an obstacle in hatcheries using brood stocks from these populations. However, naturally spawning sockeye salmon are highly successful and are the most important commercially fished salmon species in the United States. Most of the commercial landings of sockeye salmon are of feral fish originating in Alaska. The success of natural populations of salmon in which IHNV is enzootic, and the recurrent outbreaks of the disease in hatchery fish, led us to compare IHNW prevalence rates in hatchery and feral salmon populations.

Annual Coded Wire Tag Program; Oregon Missing Production Groups, 1997 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lewis, Mark A.; Mallette, Christine; Murray, William M.

1998-03-01

This annual report is in fulfillment of contract obligations with Bonneville Power Administration which is the funding source for the Oregon Department of Fish and Wildlife's Annual Coded Wire Tag Program - Oregon Missing Production Groups Project. Tule stock fall chinook were caught primarily in British Columbia and Washington ocean, and Oregon freshwater fisheries. Up-river bright stock fall chinook contributed primarily to Alaska and British Columbia ocean commercial, and Columbia River gillnet and other freshwater fisheries. Contribution of Rogue stock fall chinook released in the lower Columbia River occurred primarily in Oregon ocean commercial and Columbia river gillnet fisheries. Willamettemore » stock spring chinook contributed primarily to Alaska and British Columbia ocean commercial, Oregon freshwater sport and Columbia River gillnet fisheries. Willamette stock spring chinook released by CEDC contributed to similar ocean fisheries, but had much higher catch in gillnet fisheries than the same stocks released in the Willamette system. Up-river stocks of spring chinook contributed almost exclusively to Columbia River sport fisheries and other freshwater recovery areas. The up-river stocks of Columbia River summer steelhead contributed primarily to the Columbia River gillnet and other freshwater fisheries. Coho ocean fisheries from Washington to California were closed or very limited from 1994 through 1997 (1991 through 1994 broods). This has resulted in a greater average percent of catch for other fishery areas. Coho stocks released by ODFW below Bonneville Dam contributed mainly to Oregon and Washington ocean, Columbia Gillnet and other freshwater fisheries. Coho stocks released in the Klaskanine River and Youngs Bay area had similar ocean catch, but much higher contribution to gillnet fisheries than the other coho releases. Coho stocks released above Bonneville Dam had similar contribution to ocean fisheries as other coho releases. However, they contributed more to gillnet fisheries above Bonneville Dam than coho released below the dam. Survival rates of salmon and steelhead are influenced, not only by factors in the hatchery (disease, density, diet, size and time of release) but also by environmental factors in the river and ocean. These environmental factors are influenced by large scale weather patterns such as El Nino over which man has no influence. Changes in rearing conditions in the hatchery, over which man has some influence, do impact the survival rates. However, these impacts can be offset by impacts caused by environmental factors. Coho salmon released in the Columbia River generally experience better survival rates when released later in the spring. However, for the 1990 brood year June releases of Columbia River coho had much lower survival than May releases, for all ODFW hatcheries. In general survival of ODFW Columbia River hatchery coho has declined to low levels since the 1989 brood year. In an effort to evaluate photonic marking as a tool to mass mark salmonids, two groups of 1995 brood juvenile coho salmon were marked at Sandy Hatchery. The first group (Group A) received a fluorescent red mark, adipose fin clip and coded-wire tag. The second group (Group B) received a cryptic blue mark, adipose fin clip and coded-wire tag. Both groups were released in the spring of 1997. No photonic marks were detected in the precocious males (jacks) returning to Sandy hatchery in the fall of 1997.« less

Ammonia disinfection of hatchery waste for elimination of single-stranded RNA viruses.

PubMed

Emmoth, Eva; Ottoson, Jakob; Albihn, Ann; Belák, Sándor; Vinnerås, Björn

2011-06-01

Hatchery waste, an animal by-product of the poultry industry, needs sanitation treatment before further use as fertilizer or as a substrate in biogas or composting plants, owing to the potential presence of opportunistic pathogens, including zoonotic viruses. Effective sanitation is also important in viral epizootic outbreaks and as a routine, ensuring high hygiene standards on farms. This study examined the use of ammonia at different concentrations and temperatures to disinfect hatchery waste. Inactivation kinetics of high-pathogenic avian influenza virus H7N1 and low-pathogenic avian influenza virus H5N3, as representatives of notifiable avian viral diseases, were determined in spiked hatchery waste. Bovine parainfluenza virus type 3, feline coronavirus, and feline calicivirus were used as models for other important avian pathogens, such as Newcastle disease virus, infectious bronchitis virus, and avian hepatitis E virus. Bacteriophage MS2 was also monitored as a stable indicator. Coronavirus was the most sensitive virus, with decimal reduction (D) values of 1.2 and 0.63 h after addition of 0.5% (wt/wt) ammonia at 14 and 25°C, respectively. Under similar conditions, high-pathogenic avian influenza H7N1 was the most resistant, with D values of 3.0 and 1.4 h. MS2 was more resistant than the viruses to all treatments and proved to be a suitable indicator of viral inactivation. The results indicate that ammonia treatment of hatchery waste is efficient in inactivating enveloped and naked single-stranded RNA viruses. Based on the D values and confidence intervals obtained, guidelines for treatment were proposed, and one was successfully validated at full scale at a hatchery, with MS2 added to hatchery waste.

Selected Area Fishery Evaluation Project Economic Analysis Study Final Report, Final Draft Revision 4: November 10, 2006.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bonneville Power Administration; Washington Department of Fish and Wildlife; Oregon Department of Fish and Wildlife

2006-11-01

The purpose of this Study is to provide an economic review of current and proposed changes to the Select Area Fishery Evaluation Project (SAFE or Project). The Study results are the information requested in comments made on the Project by a joint review dated March 2005 by the Northwest Power and Conservation Council (NPCC) Independent Scientific Review Panel (ISRP) and Independent Economic Analysis Board (IEAB). North et al. (2006) addressed technical questions about operations and plans, and this report contains the response information for comments concerning Project economics. This report can be considered an economic feasibility review meeting guidelines formore » cost-effective analysis developed by the IEAB (2003). It also contains other economic measurement descriptions to illustrate the economic effects of SAFE. The SAFE is an expansion of a hatchery project (locally called the Clatsop Economic Development Council Fisheries Project or CEDC) started in 1977 that released an early run coho (COH) stock into the Youngs River. The Youngs River entrance to the Columbia River at River Mile 12 is called Youngs Bay, which is located near Astoria, Oregon. The purpose of the hatchery project was to provide increased fishing opportunities for the in-river commercial fishing gillnet fleet. Instead of just releasing fish at the hatchery, a small scale net pen acclimation project in Youngs Bay was tried in 1987. Hirose et al. (1998) found that 1991-1992 COH broodstock over-wintered at the net pens had double the smolt-to-adult return rate (SAR) of traditional hatchery release, less than one percent stray rates, and 99 percent fishery harvests. It was surmised that smolts from other Columbia River hatcheries could be hauled to the net pens for acclimation and release to take advantage of the SAR's and fishing rates. Proposals were tendered to Bonneville Power Administration (BPA) and other agencies to fund the expansion for using other hatcheries smolts and other off-channel release sites. The BPA, who had been providing funds to the Project since 1982, greatly increased their financial participation for the experimental expansion of the net pen operations in 1993. Instead of just being a funding partner in CEDC operations, the BPA became a major financing source for other hatchery production operations. The BPA has viewed the 10 plus years of funding since then as an explorative project with two phases: a 'research' phase ending in 1993, and a 'development' phase ending in 2006. The next phase is referred to in proposals to BPA for continued funding as an 'establishment' phase to be started in 2007. There are three components of SAFE: (1) The CEDC owns and operates the net pens in the Columbia River estuary on the Oregon side. The CEDC also owns and operates a hatchery on the South Fork Klaskanine River. (2) There are many other hatcheries contributing smolts to the net pen operations. The present suite of hatcheries are operated by the Washington Department of Fish and Wildlife (WDFW) and Oregon Department of Fish and Wildlife (ODFW). The WDFW owns and operates the net pens at Deep River on the Washington side of the Columbia River. (3) The monitoring and evaluation (M&E) responsibilities are performed by employees of WDFW and ODFW. BPA provides funding for all three components as part of NPCC Project No. 199306000. The CEDC and other contributing hatcheries have other sources of funds that also support the SAFE. BPA's minor share (less than 10 percent) of CEDC funding in 1982 grew to about 55 percent in 1993 with the beginning of the development phase of the Project. The balance of the CEDC budget over the years has been from other federal, state, and local government programs. It has also included a 10 percent fee assessment (five percent of ex-vessel value received by harvesters plus five percent of purchase value made by processors) on harvests that take place in off-channel locations near the release sites. The CEDC total annual budget in the last several years has been in the $600 to $700 thousand range. The Project over the years also has relied on heavy volunteer participation and other agency in-kind support. The CEDC budget is exclusive of WDFW and ODFW M&E costs, and all non-CEDC hatchery smolt production costs. The annual estimated operation and management costs for SAFE except for the value of volunteer time and donated materials is in the $2.4 million range. Of this amount, BPA annual funding has been in the $1.6 million or two thirds range in recent years. Depreciation on capital assets (or an equivalent amount for annual contributions to a capital improvement fund) would be in addition to these operation and management costs. North et al. (2006) documented results through the second of three phases and described potential capacities. Full capacity as defined in early planning for the project (TRG 1996) was not reached by the time the second phase ended.« less

Presence and significance of chytrid fungus Batrachochytrium dendrobatidis and other amphibian pathogens at warm-water fish hatcheries in southeastern North America

USGS Publications Warehouse

Green, D. Earl; Dodd, C. Kenneth

2007-01-01

Our objective was to determine whether diseases known to have detrimental effects on amphibians (ranavirus, BD, mesomycetozoa, protozoa and helminths) are present in amphibian larvae living in warm-water fish hatcheries in the southeastern United States. We further examined hatchery records to assess the extent to which amphibian larvae have been transported throughout various regions and potentially contribute to spreading emerging infectious diseases. 

Behavior of steelhead fry in a laboratory stream is affected by fish density but not rearing environment

USGS Publications Warehouse

Riley, Stephen C.; Tatara, Christopher P.; Berejikian, Barry A.; Flagg, Thomas A.

2009-01-01

We quantified the aggression, feeding, dominance, position choice, and territory size of naturally reared steelhead Oncorhynchus mykiss fry stocked with two types of hatchery-reared fry (from conventional and enriched rearing environments) at two densities in experimental flumes to determine how rearing environment and fish density affect the behavior of steelhead fry. We found that fry density had a significant effect on most response variables but that rearing treatment did not. The rates of threats and attacks were positively correlated with fry density, but the overall feeding rate was negatively correlated. Naturally reared fry were dominant more often at low densities, and hatchery-reared fry were dominant more often at high densities. There were no significant effects of hatchery rearing treatment on aggression, feeding, dominance, or territory size. The only significant effect of rearing treatment was on the position of naturally reared fry, which occupied more upstream positions when stocked with conventional than with enriched hatchery-reared fry. Overall, rearing environment had relatively little influence on the behavior of steelhead fry. Our results indicate that stocking hatchery-reared steelhead fry at low densities may have effects on similar-size wild fish comparable to an equivalent increase in the density of wild fish. We suggest that releasing hatchery-reared steelhead fry as a supplementation strategy may have few direct negative ecological effects on wild fry.

Spatial and temporal use of a spawning site in the middle green river by wild and hatchery-reared razorback suckers

USGS Publications Warehouse

Modde, T.; Bowen, Z.H.; Kitcheyan, D.C.

2005-01-01

The population of endangered razorback suckers Xyrauchen texanus in the middle Green River (upper Colorado River basin) has declined during the last 40 years. The apparent cause for this decline is a lack of successful recruitment. This study used radiotelemetry to evaluate the ability of hatchery-reared razorback suckers to locate spawning areas where wild fish congregate during the ascending hydrographic limb of the snowmelt runoff. Hatchery-reared razorback suckers appeared to show similar reproductive behavior to wild fish. Both wild and hatchery-reared fish were found near the middle Green River spawning area between 1 and 25 May 2000. Hatchery fish occupied the same areas on the spawning site as wild fish, and remained on the spawning site during both nocturnal and diurnal hours. Males were more abundant on the spawning area than females, but the few females captured tended to stage away from the primary spawning area. The results from this study suggest hatchery-reared fish are capable of responding to natural cues that prompt spawning aggregations and are successful in locating existing spawning aggregations of wild fish. Given attention to stocking criteria, including genetic diversity and the size and time of stocking, the challenges of recovering razorback suckers will center on those factors that led to the population declines, particularly the survival of early life stages in off-channel habitats. ?? American Fisheries Society 2005.

Effects of rearing density and dietary fat content on burst-swim performance and oxygen transport capacity in juvenile Atlantic salmon Salmo salar.

PubMed

Hammenstig, D; Sandblom, E; Axelsson, M; Johnsson, J I

2014-10-01

The effects of hatchery rearing density (conventional or one third of conventional density) and feeding regime (high or reduced dietary fat levels) on burst-swim performance and oxygen transport capacity were studied in hatchery-reared Atlantic salmon Salmo salar, using wild fish as a reference group. There was no effect of rearing density or food regime on swimming performance in parr and smolts. The maximum swimming speed of wild parr was significantly higher than that of hatchery-reared conspecifics, while no such difference remained at the smolt stage. In smolts, relative ventricle mass was higher in wild S. salar compared with hatchery-reared fish. Moreover, wild S. salar had lower maximum oxygen consumption following a burst-swim challenge than hatchery fish. There were no effects of hatchery treatment on maximum oxygen consumption or relative ventricle mass. Haemoglobin and haematocrit levels, however, were lower in low-density fish than in fish reared at conventional density. Furthermore, dorsal-fin damage, an indicator of aggression, was similar in low-density reared and wild fish and lower than in S. salar reared at conventional density. Together, these results suggest that reduced rearing density is more important than reduced dietary fat levels in producing an S. salar smolt suitable for supplementary release. © 2014 The Fisheries Society of the British Isles.

Early ocean survival and marine movements of hatchery and wild steelhead trout ( Oncorhynchus mykiss) determined by an acoustic array: Queen Charlotte Strait, British Columbia

NASA Astrophysics Data System (ADS)

Welch, David W.; Ward, Bruce R.; Batten, Sonia D.

2004-03-01

Early ocean movements, residency, and survival of steelhead (Oncorhynchus mykiss) were examined in Queen Charlotte Strait, a large (20×100 km2) marine area separating Vancouver Island from the mainland. The results provide the first detailed data on the ocean biology of hatchery and wild steelhead smolts. Initial ocean movements were not strongly directed, with most smolts swimming in the range of 0.2-0.5 body length (BL) s-1. The majority (78%) vacated Queen Charlotte Strait within 1 week of release in freshwater. Relative marine survival of hatchery smolts surgically implanted 1 month prior to release was identical to that of wild smolts implanted on the day of release; survival of hatchery smolts transported to the study site, implanted, and released all on the same day was significantly lower. The results suggest that the early marine survival of hatchery and wild smolts may be fundamentally similar, but that the cumulative stress of transportation and surgery may reduce post-surgery survival. Hatchery smolts moved at higher average swimming speeds than wild smolts, but the difference was not statistically significant. Early marine survival within the study region appears to be relatively high (⩾55%), contradicting assumptions that the early marine phase is the critical period for determining salmon recruitment.

Snake River Sockeye Salmon Captive Broodstock Program Hatchery Element : Project Progress Report 2007 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baker, Dan J.; Heindel, Jeff A.; Green, Daniel G.

2008-12-17

Numbers of Snake River sockeye salmon Oncorhynchus nerka have declined dramatically in recent years. In Idaho, only the lakes of the upper Salmon River (Sawtooth Valley) remain as potential sources of production (Figure 1). Historically, five Sawtooth Valley lakes (Redfish, Alturas, Pettit, Stanley, and Yellowbelly) supported sockeye salmon (Bjornn et al. 1968; Chapman et al. 1990). Currently, only Redfish Lake receives a remnant anadromous run. On April 2, 1990, the National Oceanic and Atmospheric Administration Fisheries Service (NOAA - formerly National Marine Fisheries Service) received a petition from the Shoshone-Bannock Tribes (SBT) to list Snake River sockeye salmon as endangeredmore » under the United States Endangered Species Act (ESA) of 1973. On November 20, 1991, NOAA declared Snake River sockeye salmon endangered. In 1991, the SBT, along with the Idaho Department of Fish & Game (IDFG), initiated the Snake River Sockeye Salmon Sawtooth Valley Project (Sawtooth Valley Project) with funding from the Bonneville Power Administration (BPA). The goal of this program is to conserve genetic resources and to rebuild Snake River sockeye salmon populations in Idaho. Coordination of this effort is carried out under the guidance of the Stanley Basin Sockeye Technical Oversight Committee (SBSTOC), a team of biologists representing the agencies involved in the recovery and management of Snake River sockeye salmon. National Oceanic and Atmospheric Administration Fisheries Service ESA Permit Nos. 1120, 1124, and 1481 authorize IDFG to conduct scientific research on listed Snake River sockeye salmon. Initial steps to recover the species involved the establishment of captive broodstocks at the Eagle Fish Hatchery in Idaho and at NOAA facilities in Washington State (for a review, see Flagg 1993; Johnson 1993; Flagg and McAuley 1994; Kline 1994; Johnson and Pravecek 1995; Kline and Younk 1995; Flagg et al. 1996; Johnson and Pravecek 1996; Kline and Lamansky 1997; Pravecek and Johnson 1997; Pravecek and Kline 1998; Kline and Heindel 1999; Hebdon et al. 2000; Flagg et al. 2001; Kline and Willard 2001; Frost et al. 2002; Hebdon et al. 2002; Hebdon et al. 2003; Kline et al. 2003a; Kline et al. 2003b; Willard et al. 2003a; Willard et al. 2003b; Baker et al. 2004; Baker et al. 2005; Willard et al. 2005; Baker et al. 2006; Plaster et al. 2006; Baker et al. 2007). The immediate goal of the program is to utilize captive broodstock technology to conserve the population's unique genetics. Long-term goals include increasing the number of individuals in the population to address delisting criteria and to provide sport and treaty harvest opportunity. (1) Develop captive broodstocks from Redfish Lake sockeye salmon, culture broodstocks and produce progeny for reintroduction. (2) Determine the contribution hatchery-produced sockeye salmon make toward avoiding population extinction and increasing population abundance. (3) Describe O. nerka population characteristics for Sawtooth Valley lakes in relation to carrying capacity and broodstock program reintroduction efforts. (4) Utilize genetic analysis to discern the origin of wild and broodstock sockeye salmon to provide maximum effectiveness in their utilization within the broodstock program. (5) Transfer technology through participation in the technical oversight committee process, provide written activity reports, and participate in essential program management and planning activities. Idaho Department of Fish and Game's participation in the Snake River Sockeye Salmon Captive Broodstock Program includes two areas of effort: (1) sockeye salmon captive broodstock culture, and (2) sockeye salmon research and evaluations. Although objectives and tasks from both components overlap and contribute to achieving the same goals, work directly related to sockeye salmon captive broodstock research and enhancement will appear under a separate cover. Research and enhancement activities associated with Snake River sockeye salmon are permitted under NOAA permit numbers 1120, 1124, and 1481. This report details fish culture information collected between January 1 and December 31, 2007.« less

Grande Ronde Endemic Spring Chinook Project - ODFW, 2008 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Patterson, Scott

2009-04-10

Core activities of the Grande Ronde Endemic Spring Chinook Supplementation Program (GRESCSP) are funded through the authority of the Lower Snake River Fish and Wildlife Compensation Plan (LSRCP). The LSRCP program was approved by the Water Resources Development Act of 1976, PL 94-587, Section 102, 94th Congress substantially in accordance with the Special Report, LSRCP, June 1975 on file with the Chief of Engineers. The LSRCP was prepared and submitted in compliance with the Fish and Wildlife Coordination Act of 1958, PL 85-624, 85th Congress, August 12, 1958 to mitigate for the losses of fish and wildlife caused by themore » construction of dams on lower Snake River. The GRESCSP is an artificial propagation program that was initiated by Bonneville Power Administrations Fish and Wildlife program in the mid 1990's. The intent of this program was to change the mitigation aspect of the LSRCP program (harvest mitigation) to an integrated supplementation program; inasmuch as, hatchery produced fish could be experimentally used as a recovery tool and fish surplus to mitigation would be available for in-place and in-kind harvest. Fish production is still authorized by the LSRCP with the original mitigation return goal of 5,860 adult spring Chinook to the project area. The GRESCSP was developed with two primary components: (1) conventional broodstock (projects 199800702; 199800703; 199800704) and (2) captive brood (projects 199801001; 199801006). The GRESCSP relies on cooperative M&E efforts from the LSRCP including setting aside the Wenaha and Minam tributaries as natural production reserves components used for reference streams. The GRESCSP, coordinated with federal and tribal partners, identifies production levels for both propagation components and weir management strategies for each of the three supplemented tributary areas within the Grande Ronde Sub-basin. The three supplemented areas are Catherine Creek, Lostine River, and upper Grande Ronde River. Lookingglass Creek, an extirpated area, will be stocked (smolts and adults) with Catherine Creek origin salmon to initiate natural production in unseeded habitat, and to initiate future harvest opportunities. The current production levels have been incorporated into the U.S. v. Oregon Interim Management Agreement. The purpose of this contract is to integrate Bonneville Power Administration (BPA) efforts with the Lower Snake River Compensation Plan (LSRCP) program utilizing Lookingglass Hatchery as the primary rearing facility. BPA constructed an adult holding and spawning structure on the hatchery grounds; however, maintenance of this infrastructure was discontinued due to funding limitation and transferred to the LSRCP program in 2007. These integrated efforts focus on holding and spawning adults, rearing juveniles, fish health, and monitoring natural production (Redd counts) for Catherine Creek, Lostine River, and Upper Grande Ronde stocks.« less

Salmonid Gamete Preservation in the Snake River Basin : 2000 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Armstrong, Robyn; Kucera, Paul A.

2001-06-01

Steelhead (Oncorhynchus mykiss) and chinook salmon (Oncorhynchus tshawytscha) populations in the Northwest are decreasing. Genetic diversity is being lost at an alarming rate. The Nez Perce Tribe (Tribe) strives to ensure availability of genetic samples of the existing male salmonid population by establishing and maintaining a germplasm repository. The sampling strategy, initiated in 1992, has been to collect and preserve male salmon and steelhead genetic diversity across the geographic landscape by sampling within the major river subbasins in the Snake River basin, assuming a metapopulation structure existed historically. Gamete cryopreservation conserves genetic diversity in a germplasm repository, but is notmore » a recovery action for listed fish species. The Tribe was funded in 2000 by the Bonneville Power Administration (BPA) and the U.S. Fish and Wildlife Service Lower Snake River Compensation Plan (LSRCP) to coordinate gene banking of male gametes from Endangered Species Act listed steelhead and spring and summer chinook salmon in the Snake River basin. In 2000, a total of 349 viable chinook salmon semen samples from the Lostine River, Catherine Creek, upper Grande Ronde River, Lookingglass Hatchery (Imnaha River stock), Rapid River Hatchery, Lake Creek, the South Fork Salmon River weir, Johnson Creek, Big Creek, Capehorn Creek, Marsh Creek, Pahsimeroi Hatchery, and Sawtooth Hatchery (upper Salmon River stock) were cryopreserved. Also, 283 samples of male steelhead gametes from Dworshak Hatchery, Fish Creek, Grande Ronde River, Imnaha River, Little Sheep Creek, Pahsimeroi Hatchery and Oxbow Hatchery were also cryopreserved. The Tribe acquired 5 frozen steelhead samples from the Selway River collected in 1994 and 15 from Fish Creek sampled in 1993 from the U.S. Geological Survey, for addition into the germplasm repository. Also, 590 cryopreserved samples from the Grande Ronde chinook salmon captive broodstock program are being stored at the University of Idaho as a long-term archive, half of the total samples. A total of 2,420 cryopreserved samples from Snake River basin steelhead and spring and summer chinook salmon, from 1992 through 2000, are stored in two independent locations at the University of Idaho and Washington State University. Two large freezer tanks are located at each university, each of which holds approximately 25% of the cryopreserved sperm. One tank at each university is considered long-term archival storage, while the other is short-term. Fertility trials were conducted at each university to test the viability of the cryopreserved chinook salmon sperm. The experiments on the 2000 frozen and thawed sperm at both universities found a fertility rate of 60-70%. This document also summarizes 1999-2000 steelhead genetic analysis report. The results of mitochondrial, nuclear DNA and microsatellite analysis found differences and shared haplotypes between the stocks of fish sampled for cryopreservation. Recommendations for future gene banking efforts include the need for establishment of a regional genome resource bank, a greater emphasis on cryopreserving wild fish, continued fertility trials, exploring field cryopreservation and genetic analysis on all fish represented in the germplasm repository.« less

Physiological response to hooking stress in hatchery and wild rainbow trout (Salmo gairdneri)

USGS Publications Warehouse

Wydoski, R.S.; Wedemeyer, G.A.; Nelson, N. C.

1976-01-01

This study evaluated the physiological response of rainbow trout to hooking stress after being played under standardized conditions (0–5 min) and estimated the time needed for recovery (to 72 h). Plasma osmolality and chloride measurements were used to evaluate osmoregulatory disturbances and gill ion-exchange function, and plasma glucose was used as an index of the generalized nonspecific physiological stress response. Hooking stress caused more severe blood chemistry differences in hatchery fish than in wild trout. Also, hooking stress imposed a greater stress on larger than on smaller hatchery rainbow trout. Higher water temperatures aggravated the delayed hyperglycemia and hyperchloremia in both hatchery and wild trout but only about 3 days were needed for recovery at 4, 10, or 20 C.

Growth and smolting in lower-mode Atlantic Salmon stocked into the Penobscot River, Maine

USGS Publications Warehouse

Zydlewski, Joseph D.; O'Malley, Andrew; Cox, Oliver; Ruksznis, Peter; Trial, Joan G.

2014-01-01

Restoration of Atlantic Salmon Salmo salar in Maine has relied on hatchery-produced fry and smolts for critical stocking strategies. Stocking fry minimizes domestication selection, but these fish have poor survival. Conversely, stocked smolts have little freshwater experience but provide higher adult returns. Lower-mode (LM) fish, those not growing fast enough to ensure smolting by the time of stocking, are a by-product of the smolt program and are an intermediate hatchery product. From 2002 to 2009, between 70,000 and 170,000 marked LM Atlantic Salmon were stocked into the Pleasant River (a tributary in the Penobscot River drainage, Maine) in late September to early October. These fish were recaptured as actively migrating smolts (screw trapping), as nonmigrants (electrofishing), and as returning adults to the Penobscot River (Veazie Dam trap). Fork length (FL) was measured and a scale sample was taken to retrospectively estimate FL at winter annulus one (FW1) using the intercept-corrected direct proportion model. The LM fish were observed to migrate as age-1, age-2, and infrequently as age-3 smolts. Those migrating as age-1 smolts had a distinctly larger estimated FL at FW1 (>112 mm) than those that remained in the river for at least one additional year. At the time of migration, age-2 and age-3 smolts were substantially larger than age-1 smolts. Returning adult Atlantic Salmon of LM origin had estimated FLs at FW1 that corresponded to smolt age (greater FL for age 1 than age 2). The LM product produces both age-1 and age-2 smolts that have greater freshwater experience than hatchery smolts and may have growth and fitness advantages. The data from this study will allow managers to better assess the probability of smolting age and manipulate hatchery growth rates to produce a targeted-size LM product.

Limited hatchery introgression into wild brook trout (Salvelinus fontinalis) populations despite reoccurring stocking

USGS Publications Warehouse

White, Shannon L.; Miller, William L.; Dowell, Stephanie A.; Bartron, Meredith L.; Wagner, Tyler

2018-01-01

Due to increased anthropogenic pressures on many fish populations, supplementing wild populations with captive‐raised individuals has become an increasingly common management practice. Stocking programs can be controversial due to uncertainty about the long‐term fitness effects of genetic introgression on wild populations. In particular, introgression between hatchery and wild individuals can cause declines in wild population fitness, resiliency, and adaptive potential, and contribute to local population extirpation. However, low survival and fitness of captive‐raised individuals can minimize the long‐term genetic consequences of stocking in wild populations, and to date the prevalence of introgression in actively stocked ecosystems has not been rigorously evaluated. We quantified the extent of introgression in 30 populations of wild brook trout (Salvelinus fontinalis) in a Pennsylvania watershed, and examined the correlation between introgression and 11 environmental covariates. Genetic assignment tests were used to determine the origin (wild vs. captive‐raised) for 1742 wild‐caught and 300 hatchery brook trout. To avoid assignment biases, individuals were assigned to two simulated populations that represented the average allele frequencies in wild and hatchery groups. Fish with intermediate probabilities of wild ancestry were classified as introgressed, with threshold values determined through simulation. Even with reoccurring stocking at most sites, over 93% of wild‐caught individuals probabilistically assigned to wild origin, and only 5.6% of wild‐caught fish assigned to introgressed. Models examining environmental drivers of introgression explained less than 3% of the among‐population variability, and all estimated effects were highly uncertain. This was not surprising given overall low introgression observed in this study. Our results suggest that introgression of hatchery‐derived genotypes can occur at low rates, even in actively stocked ecosystems and across a range of habitats. However, a cautious approach to stocking may still be warranted, as the potential effects of stocking on wild population fitness and the mechanisms limiting introgression are not known.

50 CFR 70.1 - Purpose.

Code of Federal Regulations, 2012 CFR

2012-10-01

... FISHERIES CONSERVATION AREAS NATIONAL FISH HATCHERIES § 70.1 Purpose. All national fish hatchery areas are maintained for the fundamental purpose of the propagation and distribution of fish and other aquatic animal...

50 CFR 70.1 - Purpose.

Code of Federal Regulations, 2011 CFR

2011-10-01

... FISHERIES CONSERVATION AREAS NATIONAL FISH HATCHERIES § 70.1 Purpose. All national fish hatchery areas are maintained for the fundamental purpose of the propagation and distribution of fish and other aquatic animal...

50 CFR 70.1 - Purpose.

Code of Federal Regulations, 2014 CFR

2014-10-01

... FISHERIES CONSERVATION AREAS NATIONAL FISH HATCHERIES § 70.1 Purpose. All national fish hatchery areas are maintained for the fundamental purpose of the propagation and distribution of fish and other aquatic animal...

50 CFR 70.1 - Purpose.

Code of Federal Regulations, 2013 CFR

2013-10-01

... FISHERIES CONSERVATION AREAS NATIONAL FISH HATCHERIES § 70.1 Purpose. All national fish hatchery areas are maintained for the fundamental purpose of the propagation and distribution of fish and other aquatic animal...

Statewide Publc Facilities section, Alaska Department of Transportation &

Science.gov Websites

&PF> Statewide Public Facilities Welcome to the Statewide Public Facilities Jack Hernandez Sport Fish Hatchery Anchorage Sport Fish Hatchery Statewide Public Facilities provides project management

Behavior and movement of adult summer steelhead following collection and release, lower Cowlitz River, Washington, 2012--2013

USGS Publications Warehouse

Kock, Tobias J.; Liedtke, Theresa L.; Ekstrom, Brian K.; Rondorf, Dennis W.; Gleizes, Chris; Dammers, Wolf; Gibson, Scott; Murphy, Jamie

2013-01-01

Executive SummaryHistorically, adult summer steelhead Oncorhynchus mykiss returning to hatcheries on the lower Cowlitz River were sometimes transported and released in the river (recycled) to provide additional angling opportunity for the popular sport fishery in the basin. However, this practice has not been used in recent years because of concerns associated with interactions between hatchery fish and wild fish. Fishery managers were interested in resuming recycling but lacked information regarding effects of this practice on wild steelhead so we conducted a study during 2012–2013 to: (1) enumerate recycled steelhead that returned to the hatchery or were removed by anglers; and (2) determine if steelhead that were not removed from the river remained in the system where they could interact with wild fish.During June–August 2012, a total of 549 summer steelhead were captured at the Cowlitz Salmon Hatchery, tagged, and released downstream near the Interstate 5 Bridge. All recycled steelhead were tagged with a white Floy® tag and opercle-punched; 109 (20 percent) of these fish also were radio-tagged. All adult steelhead that return to the hatchery were handled by hatchery staff so recycled steelhead that returned to the hatchery were enumerated daily. A creel survey and voluntary angler reports were used to determine the number of recycled steelhead that were caught by anglers. We established three fixed telemetry monitoring sites on the mainstem Cowlitz River and eight additional sites were deployed on tributaries to the lower Cowlitz River where wild winter steelhead are known to spawn. We also conducted mobile tracking from a boat during October 2012, November 2012, and January 2013 to locate radio-tagged fish.A total of 10,722 summer steelhead were captured at the Cowlitz Salmon Hatchery in 2012, which was the largest return since 2008. River flows during much of the study period were similar to 2008–2011 average flows, however, high-flow periods in July and November 2012 were nearly twice as high as the 2008–2011 average flows. We determined that 50 percent (273 fish) of the recycled steelhead returned to the hatchery and 18 percent (102 fish) of the recycled steelhead were caught by anglers. Most (243 fish; 89 percent) of the recycled steelhead that returned to the hatchery were recollected during July–August. The average elapsed time from release to recapture at the hatchery was 9 days (d) and 72 percent (182 fish) of the fish returned to the hatchery within 14 d of release. These trends were similar for recycled steelhead that were caught by anglers. Most fish were caught during July–August and the median time from release to capture was 10 d. We determined that 65 percent (70 fish) of the angler-caught fish returned to the hatchery within 14 d of release. River flows appeared to affect both hatchery returns and angler catch. The daily number of recycled steelhead that were recollected at the hatchery were low during periods when river flows were decreasing and high during periods when river flows were increasing. Conversely, daily angler catch of recycled steelhead generally was low when flows were increasing and high when flows were decreasing.We determined that 32 percent of the recycled steelhead (174 fish) were not removed from the lower Cowlitz River, based on observations from hatchery returns and angler reports, but results from the radio-tagged fish were insightful for understanding what may have happened to these fish. By comparison, we determined that 24 percent of the radio-tagged fish were not known to have been removed from the river. We determined that 12 percent of these fish were actively moving in the lower Cowlitz River during October 2012–January 2013. None of the radio-tagged fish were detected in tributaries during the study period except for a single fish that spent approximately 7 d in the Toutle River during early September. During October 2012–January 2013, 10 percent of the radio-tags from recycled steelhead were detected near popular fishing areas, and 2 percent of the radio-tagged steelhead were never detected during the study period. We suspect that a large proportion of these fish may have been harvested and not reported, or died.Detection patterns of radio-tagged steelhead showed that most fish (82 percent) moved upstream from the release site and were detected at the Trout Hatchery and the Barrier Dam sites. The median time from release to detection at these sites was 3.7 d and many of these fish made multiple trips between the two sites. Nearly one-third (29 percent) of the recycled steelhead that were detected at the Trout Hatchery and the Barrier Dam made at least two trips between the sites and some fish made as many as six trips. Radio-tagged fish that remained in the lower Cowlitz River during the spawning period (December 2012–January 2013) were observed in the river reach between the mouth of Ostrander Creek (river mile 10) and the Trout Hatchery (river mile 44).During this study, we collected data on opercle punch regrowth rates to understand the temporal effectiveness of this marking technique. We took opercle measurements for a total of 190 fish during the study. Fresh opercle punches were measured for 63 fish at the time of marking, and the remaining 127 fish were measured when fish returned to the hatchery. We determined that opercle punches remained open for about 30 d. The holes appeared to regrow slowly in the first 20 d after marking, but regrowth accelerated during the 20–30 d post-marking period. After 30 d, all opercle punches that we observed had completely closed due to tissue regrowth.Our study showed that a large proportion (68 percent) of the recycled steelhead were removed from the lower Cowlitz River. These fish primarily entered the hatchery or were caught by anglers within 14 d of release, which suggests that they present minimal risk to wild fish in the system. However, the remaining fish (32 percent) could not be accounted for, which may complicate fisheries management decisions associated with recycling summer steelhead. Findings from the radiotelemetry study suggest that unreported harvest or mortality could explain a large proportion of those fish that were not reported as having been removed from the river. Furthermore, intensive monitoring of the key spawning tributaries failed to detect a single fish during the spawning period. These findings were supported by observations from weir traps operated by the Washington Department of Fish and Wildlife. Our findings indicate that additional research may be warranted to further examine the effects of recycling hatchery summer steelhead in the lower Cowlitz River.

Effect of incubation temperature on post-embryonic survival and growth of steelhead in a natural stream and a hatchery (Study sites: Dworshak Hatchery and North Fork Palouse River; Stocks: Dworshak hatchery; Year classes: 1994 and 1995): Chapter 5

USGS Publications Warehouse

Rubin, Stephen P.; Reisenbichler, Reginald R.; Wetzel, Lisa A.; Stenberg, Karl D.; Baker, Bruce M.; Rubin, Stephen P.; Reisenbichler, Reginald R.; Wetzel, Lisa A.; Hayes, Michael C.

2012-01-01

We tested whether varying incubation temperatures to match development between embryos from different spawning dates affected survival and growth of unfed steelhead Oncorhynchus mykiss fry released in a stream and in hatchery ponds. Hatchery steelhead returning to the Clearwater River, Idaho were artificially spawned on two dates separated by a four week interval. Progeny from the early date (ExE, from early males and early females) were incubated in chilled (7°C) water and those from the late date (LxL) in ambient (12°C) water until developmental stage matched. A third group, created by fertilizing eggs from late females with cryopreserved milt from early males (ExL), was included to control for any genetic differences between early and late returning adults. Survival in the stream to 3 and 15 months after release was similar among crosses. Survival in the hatchery to near the end of the standard one year rearing period was similar among crosses for one of two year - classes but different for the other; however, it was difficult to ascribe the differences (ExL>ExE; LxL intermediate but closer to ExE) to incubation temperature differences. We conclude that there was little if any effect of incubation temperature on survival. Length of juveniles of one year - class differed among crosses in the stream and in the hatchery. Length of the other year - class differed among crosses in one pond at the hatchery but not in the other pond or in the stream. When length differed the pattern was always the same: ExE>LxL; ExL intermediate but closer to LxL. We speculate that incubation temperature may have affected growth of juveniles, and in particular that a longer period of incubation in chilled water may have caused fast juvenile growth relative to a shorter incubation period in ambient water.

1. GENERAL EXTERIOR VIEW LOOKING SOUTH, SHOWING FACADE OF FISH ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

1. GENERAL EXTERIOR VIEW LOOKING SOUTH, SHOWING FACADE OF FISH HATCHERY BUILDING. - Bonneville Project, Fish Hatchery, On Columbia River bordered on South by Union Pacific, Bonneville, Multnomah County, OR

6. DETAIL EXTERIOR VIEW OF WINDOW SHUTTERS ON OUTSIDE OF ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

6. DETAIL EXTERIOR VIEW OF WINDOW SHUTTERS ON OUTSIDE OF FISH HATCHERY BUILDING. - Bonneville Project, Fish Hatchery, On Columbia River bordered on South by Union Pacific, Bonneville, Multnomah County, OR

Wild and aquaculture populations of the eastern oyster compared using microsatellites

USGS Publications Warehouse

Carlsson, J.; Morrison, C.L.; Reece, K.S.

2006-01-01

Five new microsatellite markers were developed for the eastern oyster (Crassostrea virginica), and allelic variability was compared between a wild Chesapeake Bay population (James River) and a hatchery strain (DEBY???). All loci amplified readily and demonstrated allelic variability with the number of alleles ranging from 16 to 36 in the wild population and from 11 to 19 in the DEBY??? strain. Average observed and expected heterozygosities were estimated at 0.66 and 0.80 in the hatchery sample. The corresponding estimates were 0.91 and 0.75 in the wild sample. Results indicated lower genetic variability in the DEBY??? strain and significant genetic differentiation between the wild population and hatchery strain. These microsatellite loci will prove valuable for future population genetic studies and in tracking of hatchery strains used in restoration. ?? The American Genetic Association. 2006. All rights reserved.

Growth, smoltification, and smolt-to-adult return of spring chinook salmon from hatcheries on the Deschutes river, Oregon

USGS Publications Warehouse

Beckman, B.R.; Dickhoff, Walton W.; Zaugg, W.S.; Sharpe, C.; Hirtzel, S.; Schrock, R.; Larsen, D.A.; Ewing, R.D.; Palmisano, A.; Schreck, C.B.; Mahnken, C.V.W.

1999-01-01

The relationship between smoltification and smolt-to-adult return (SAR) of spring chinook salmon Oncorhynchus tshawytscha from the Deschutes River, Oregon, was examined for four release groups in each of three successive years. Fish were reared, marked with coded wire tags, and released from Round Butte Hatchery, Pelton Ladder rearing facility, and Warm Springs National Fish Hatchery. Smolt releases occurred in nearly the same place at similar times, allowing a direct comparison of SAR to several characters representing smolt quality. Return rates varied significantly among facilities, varying over an order of magnitude each year. The highest average SAR was from Pelton Ladder, the lowest was from Warm Springs. Each of the characters used as metrics of smoltification - fish size, spring growth rate (February-April), condition factor, plasma hormone concentration (thyroxine, cortisol, and insulin-like growth factor-I [IGF-I]), stress challenge, gill Na+,K+-ATPase activity, and liver glycogen concentration - varied significantly among facilities and seasonally within hatchery groups. However, only spring growth rate, gill ATPase activity, and plasma IGF-I concentration showed significant relationships to SAR. These characters and SAR itself were consistently lower for fish released from Warm Springs Hatchery than for fish from Round Butte Hatchery and Pelton Ladder. This demonstrates that differences in the quality of fish released by facilities may have profound effects on subsequent survival and suggests that manipulations of spring growth rate may be used to influence the quality of smolts released from facilities.

Effects of acidity and aluminim on the physiology and migratory behavior of Atlantic salmon smolts in Maina, USA

USGS Publications Warehouse

Magee, J.A.; Haines, T.A.; Kocik, J.F.; Beland, K.F.; McCormick, S.D.

2001-01-01

Atlantic salmon, Salmo salar, smolts of hatchery origin were held for 5 to 16 days in ambient (pH 6.35, labile Al = 60 ??g L-1), limed (pH 6.72, labile Al = 58.4 ??g L-1), or acidified (pH 5.47, labile Al=96 ??g L-1) water from the Narraguagus River in Maine, USA. Wild smolts were captured in the same river in rotary traps and held for up to two days in ambient river water. Osmoregulatory ability was assessed by measuring Na+/K+ ATPase activity, hematocrit, and blood Cl concentration in freshwater, and after 24-hr exposure to seawater. Hatchery smolts exposed to acidic water and wild smolts displayed sub-lethal ionoregulatory stress both in fresh and seawater, with mortalities of wild smolts in seawater. Using ultrasonic telemetry, hatchery-reared ambient and acid-exposed, and wild smolts were tracked as they migrated through freshwater and estuarine sections of the river. The proportion of wild smolts migrating during daylight hours was higher than for hatchery-reared smolts. Wild smolts remained in the freshwater portions of the river longer than either group of hatchery smolts, although survival during migration to seawater was similar for all three treatments. Acid-exposed hatchery-origin and wild Narraguagus River smolts were both under ionoregulatory stress that may have affected their migratory behavior, but not their survival for the time and area in which we tracked them.

Genetic diversity of populations and clones of Rhopilema esculentum in China based on AFLP analysis

NASA Astrophysics Data System (ADS)

Qiao, Hongjin; Liu, Xiangquan; Zhang, Xijia; Jiang, Haibin; Wang, Jiying; Zhang, Limin

2013-03-01

Amplified fragment length polymorphisms (AFLP) markers were developed to assess the genetic variation of populations and clones of Rhopilema esculentum Kishinouye (Scyphozoa, Rhizostomatidae). One hundred and seventy-nine loci from 56 individuals of two hatchery populations and two wild populations were genotyped with five primer combinations. The polymorphic ratio, Shannon's diversity index and average heterozygosity were 70.3%, 0.346 and 0.228 for the white hatchery population, 74.3%, 0.313, and 0.201 for the red hatchery population, 79.3%, 0.349, and 0.224 for the Jiangsu wild population, and 74.9%, 0.328 and 0.210 for the Penglai wild population, respectively. Thus, all populations had a relatively high level of genetic diversity. A specific band was identified that could separate the white from the red hatchery population. There was 84.85% genetic differentiation within populations. Individual cluster analysis using unweighted pair-group method with arithmetic mean (UPGMA) suggested that hatchery populations and wild populations could be divided. For the hatchery populations, the white and red populations clustered separately; however, for the wild populations, Penglai and Jiangsu populations clustered together. The genetic diversity at the clone level was also determined. Our data suggest that there are relatively high genetic diversities within populations but low genetic differentiation between populations, which may be related to the long-term use of germplasm resources from Jiangsu Province for artificial seeding and releasing. These findings will benefit the artificial seeding and conservation of the germplasm resources.

The effects of river impoundment and hatchery rearing on the migration behavior of juvenile steelhead in the Lower Snake River, Washington

USGS Publications Warehouse

Plumb, J.M.; Perry, R.W.; Adams, N.S.; Rondorf, D.W.

2006-01-01

We used radiotelemetry to monitor the migration behavior of juvenile hatchery and wild steelhead Oncorhynchus mykiss as they migrated through Lower Granite Reservoir and Dam on the lower Snake River, Washington. From 1996 to 2001, we surgically implanted radio transmitters in 1,540 hatchery steelhead and 1,346 wild steelhead. For analysis, we used the inverse Gaussian distribution to describe travel time distributions for cohorts (>50 fish) of juvenile steelhead as they migrated downriver. Mean travel rates were significantly related to reach- and discharge-specific water velocities. Also, mean travel rates near the dam were slower for a given range of water velocities than were mean travel rates through the reservoir, indicating that the presence of the dam caused delay to juvenile steelhead over and above the effect of water velocity. Hatchery steelhead took about twice as long as wild steelhead to pass the dam as a result of the higher proportions of hatchery steelhead traveling upriver from the dam. Because upriver travel and the resulting migration delay might decrease survival, it is possible that hatchery steelhead survive at lower rates than wild steelhead. Our analysis identified a discharge threshold (???2,400 m3/s) below which travel time and the percentage of fish traveling upriver from the dam increased rapidly, providing support for the use of minimum flow targets to mitigate for fish delay and possibly enhance juvenile steelhead survival.

Feeding response by northern squawfish to a hatchery release of juvenile salmonids in the Clearwater River, Idaho

USGS Publications Warehouse

Shively, R.S.; Poe, T.P.; Sauter, S.T.

1996-01-01

We collected gut contents from northern squawfish Ptychocheilus oregonensis captured in the Clearwater River, Idaho, 0–6 km from its confluence with the Snake River, following the release of 1.1 million yearling chinook salmon Oncorhynchus tshawytscha from the Dworshak National Fish Hatchery. Before the hatchery release, northern squawfish gut contents (by weight) in the study area were 38% crayfish Pacifastacus spp., 26% insects, 19% nonsalmonid fish, and 16% wheat kernels Triticum spp. Juvenile salmonids constituted 54% of gut contents about 24 h after the hatchery release, 78% after 5 d, and 86% after 7 d. The mean number of salmonids per gut (1.2) after release was higher than typically seen in guts from northern squawfish collected in mid-reservoir areas away from hydroelectric dams on the Snake and Columbia rivers. Length-frequency distributions of juvenile salmonids eaten and those captured in a scoop trap 4 km upstream of the study area indicated that northern squawfish were selectively feeding on the smaller individuals. We attribute the high rates of predation in the study area to the artificially high density of juvenile salmonids resulting from the hatchery release and to the physical characteristics of the study area in which the river changed from free flowing to impounded. Our results suggest that northern squawfish can quickly exploit hatchery releases of juvenile salmonids away from release sites in the Columbia River basin.

Survival Estimates for the Passage of Spring-Migrating Juvenile Salmonids through Snake and Columbia River Dams and Reservoirs, 2008.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Faulkner, James R.; Smith, Steven G.; Muir, William D.

2009-06-23

In 2008, the National Marine Fisheries Service completed the sixteenth year of a study to estimate survival and travel time of juvenile salmonids Oncorhynchus spp. passing through dams and reservoirs on the Snake and Columbia Rivers. All estimates were derived from detections of fish tagged with passive integrated transponder (PIT) tags. We PIT tagged and released a total of 18,565 hatchery steelhead O. mykiss, 15,991 wild steelhead, and 9,714 wild yearling Chinook salmon O. tshawytscha at Lower Granite Dam in the Snake River. In addition, we utilized fish PIT tagged by other agencies at traps and hatcheries upstream from themore » hydropower system and at sites within the hydropower system in both the Snake and Columbia Rivers. These included 122,061 yearling Chinook salmon tagged at Lower Granite Dam for evaluation of latent mortality related to passage through Snake River dams. PIT-tagged smolts were detected at interrogation facilities at Lower Granite, Little Goose, Lower Monumental, Ice Harbor, McNary, John Day, and Bonneville Dams and in the PIT-tag detector trawl operated in the Columbia River estuary. Survival estimates were calculated using a statistical model for tag-recapture data from single release groups (the single-release model). Primary research objectives in 2008 were to: (1) estimate reach survival and travel time in the Snake and Columbia Rivers throughout the migration period of yearling Chinook salmon and steelhead, (2) evaluate relationships between survival estimates and migration conditions, and (3) evaluate the survival estimation models under prevailing conditions. This report provides reach survival and travel time estimates for 2008 for PIT-tagged yearling Chinook salmon (hatchery and wild), hatchery sockeye salmon O. nerka, hatchery coho salmon O. kisutch, and steelhead (hatchery and wild) in the Snake and Columbia Rivers. Additional details on the methodology and statistical models used are provided in previous reports cited here. Survival and detection probabilities were estimated precisely for most of the 2008 yearling Chinook salmon and steelhead migrations. Hatchery and wild fish were combined in some of the analyses. For yearling Chinook salmon, overall percentages for combined release groups used in survival analyses in the Snake River were 80% hatchery-reared and 20% wild. For steelhead, the overall percentages were 65% hatchery-reared and 35% wild. Estimated survival from the tailrace of Lower Granite Dam to the tailrace of Little Goose Dam averaged 0.939 for yearling Chinook salmon and 0.935 for steelhead.« less

Extended-Spectrum-Beta-Lactamase- and Plasmid-Encoded Cephamycinase-Producing Enterobacteria in the Broiler Hatchery as a Potential Mode of Pseudo-Vertical Transmission

PubMed Central

Daehre, Katrin; Roesler, Uwe; Friese, Anika

2016-01-01

ABSTRACT Antimicrobial resistance through extended-spectrum beta-lactamases (ESBLs) and transferable (plasmid-encoded) cephamycinases (pAmpCs) represents an increasing problem in human and veterinary medicine. The presence of ESBL-/pAmpC-producing commensal enterobacteria in farm animals, such as broiler chickens, is considered one possible source of food contamination and could therefore also be relevant for human colonization. Studies on transmission routes along the broiler production chain showed that 1-day-old hatchlings are already affected. In this study, ESBL-/pAmpC-positive broiler parent flocks and their corresponding eggs, as well as various environmental and air samples from the hatchery, were analyzed. The eggs were investigated concerning ESBL-/pAmpC-producing enterobacteria on the outer eggshell surface (before/after disinfection), the inner eggshell surface, and the egg content. Isolates were analyzed concerning their species, their phylogroup in the case of Escherichia coli strains, the respective resistance genes, and the phenotypical antibiotic resistance. Of the tested eggs, 0.9% (n = 560) were contaminated on their outer shell surface. Further analyses using pulsed-field gel electrophoresis showed a relationship of these strains to those isolated from the corresponding parent flocks, which demonstrates a pseudo-vertical transfer of ESBL-/pAmpC-producing enterobacteria into the hatchery. Resistant enterobacteria were also found in environmental samples from the hatchery, such as dust or surfaces which could pose as a possible contamination source for the hatchlings. All 1-day-old chicks tested negative directly after hatching. The results show a possible entry of ESBL-/pAmpC-producing enterobacteria from the parent flocks into the hatchery; however, the impact of the hatchery on colonization of the hatchlings seems to be low. IMPORTANCE ESBL-/pAmpC-producing enterobacteria occur frequently in broiler-fattening farms. Recent studies investigated the prevalence and possible transmission route of these bacteria in the broiler production chain. It seemed very likely that the hatcheries play an important role in transmission and/or contamination events. There are only few data on transmission investigations from a grandparent or parent flock to their offspring. However, reliable data on direct or indirect vertical transmission events in the hatchery are not available. Therefore, we conducted our study and intensively investigated the broiler hatching eggs from ESBL-/pAmpC-positive broiler parent flocks as well as the hatchlings and the environment of the hatchery. PMID:27795309

Coeur d'Alene Tribal Production Facility, Volume I of III, 2002-2003 Progress Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Anders, Paul

2003-01-01

In fulfillment of the NWPPC's 3-Step Process for the implementation of new hatcheries in the Columbia Basin, this Step 1 submission package to the Council includes four items: (1) Cover letter from the Coeur d'Alene Tribe, Interdisciplinary Team Chair, and the USFWS; (2) References to key information (Attachments 1-4); (3) The updated Master Plan for the Tribe's native cutthroat restoration project; and (4) Appendices. In support of the Master Plan submitted by the Coeur d'Alene Tribe the reference chart (Item 2) was developed to allow reviewers to quickly access information necessary for accurate peer review. The Northwest Power Planning Councilmore » identified pertinent issues to be addressed in the master planning process for new artificial production facilities. References to this key information are provided in three attachments: (1) NWPPC Program language regarding the Master Planning Process, (2) Questions Identified in the September 1997 Council Policy, and (3) Program language identified by the Council's Independent Scientific Review Panel (ISRP). To meet the need for off-site mitigation for fish losses on the mainstem Columbia River, in a manner consistent with the objectives of the Council's Program, the Coeur d'Alene Tribe is proposing that the BPA fund the design, construction, operation, and maintenance of a trout production facility located adjacent to Coeur d'Alene Lake on the Coeur d'Alene Indian Reservation. The updated Master Plan (Item 3) represents the needs associated with the re-evaluation of the Coeur d'Alene Tribe's Trout Production Facility (No.199004402). This plan addresses issues and concerns expressed by the NWPPC as part of the issue summary for the Mountain Columbia provincial review, and the 3-step hatchery review process. Finally, item 4 (Appendices) documents the 3-Step process correspondence to date between the Coeur d'Alene Tribe and additional relevant entities. Item 4 provides a chronological account of previous ISRP reviews, official Coeur d'Alene fisheries program responses to a series of ISRP reviews, master planning documentation, and annual reports dating back to 1990. Collectively, the materials provided by the Coeur d'Alene Tribe in this Step-1 submission package comprehensively assesses key research, habitat improvement activities, and hatchery production issues to best protect and enhance native cutthroat trout populations and the historically and culturally important tribal fisheries they support.« less

Toxicity of a traditional molluscicide to asian clam veligers

USGS Publications Warehouse

Layhee, Megan J.; ,; Miho Yoshioka,; Bahram Farokhkish,; ,; Gross, Jackson A.; Sepulveda, Adam J.

2014-01-01

Aquaculture and hatchery industries are in need of effective control methods to reduce the risk of spreading aquatic invasive species, such as the Asian clam Corbicula fluminea, through aquaculture and hatchery activities. The planktonic nature of Asian clam veligers enables this life stage to enter water-based infrastructure undetected, including hatchery trucks used to stock fish. Once in hatchery trucks, veligers can disperse overland and establish in previously uninvaded habitats. As a result, there is a need to develop techniques that result in veliger mortality but do not harm fish. In September 2012, we conducted laboratory trials to determine if a molluscicide (750 mg/L potassium chloride and 25 mg/L formalin) commonly used to kill zebra mussel (Dreissena polymorpha) veligers in hatchery trucks can also effectively kill Asian clam veligers. We exposed Asian clam veligers to this molluscicide for 1, 3, and 5 h in each of two water types: deionized water and filtered lake water. We found ,20% mortality at the 1-h exposure period and 100% mortality at both the 3-h and 5-h exposure periods, regardless of water type. This laboratory study represents an important step toward reducing the spread of Asian clams by aquaculture facilities.

Distinguishing wild vs. stocked lake trout (Salvelinus namaycush) in Lake Ontario: Evidence from carbon and oxygen stable isotope values of otoliths

USGS Publications Warehouse

Schaner, T.; Patterson, W.P.; Lantry, B.F.; O'Gorman, R.

2007-01-01

We investigated the potential for using carbon and oxygen isotope values of otolith carbonate as a method to distinguish naturally produced (wild) lake trout (Salvelinus namaycush) from hatchery-reared lake trout in Lake Ontario. We determined δ 13C(CaCO3) and δ 18O(CaCO3) values of otoliths from juvenile fish taken from two hatcheries, and of otoliths from wild yearlings. Clear differences in isotope values were observed between the three groups. Subsequently we examined otoliths from large marked and unmarked fish captured in the lake, determining isotope values for regions of the otolith corresponding to the first year of life. Marked (i.e., stocked) fish showed isotope ratios similar to one of the hatchery groups, whereas unmarked fish, (wild fish or stocked fish that lost the mark) showed isotope ratios similar either to one of the hatchery groups or to the wild group. We interpret these data to suggest that carbon and oxygen isotope values can be used to determine the origin of lake trout in Lake Ontario, if a catalogue of characteristic isotope values from all candidate years and hatcheries is compiled.

5. DETAIL EXTERIOR VIEW OF CUPOLA AND WEATHER VANE ON ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

5. DETAIL EXTERIOR VIEW OF CUPOLA AND WEATHER VANE ON TOP OF THE FISH HATCHERY BUILDING. - Bonneville Project, Fish Hatchery, On Columbia River bordered on South by Union Pacific, Bonneville, Multnomah County, OR

3. DETAIL EXTERIOR VIEW LOOKING SOUTHEAST SHOWING CENTER GABLE SECTION ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

3. DETAIL EXTERIOR VIEW LOOKING SOUTHEAST SHOWING CENTER GABLE SECTION OF THE FISH HATCHERY BUILDING. - Bonneville Project, Fish Hatchery, On Columbia River bordered on South by Union Pacific, Bonneville, Multnomah County, OR

50 CFR 71.11 - Opening of national fish hatchery areas to fishing.

Code of Federal Regulations, 2014 CFR

2014-10-01

... THE INTERIOR (CONTINUED) MANAGEMENT OF FISHERIES CONSERVATION AREAS HUNTING AND FISHING ON NATIONAL... hatchery areas may be opened to sport fishing when such activity is not detrimental to the propagation and...

50 CFR 71.11 - Opening of national fish hatchery areas to fishing.

Code of Federal Regulations, 2013 CFR

2013-10-01

... THE INTERIOR (CONTINUED) MANAGEMENT OF FISHERIES CONSERVATION AREAS HUNTING AND FISHING ON NATIONAL... hatchery areas may be opened to sport fishing when such activity is not detrimental to the propagation and...

50 CFR 71.11 - Opening of national fish hatchery areas to fishing.

Code of Federal Regulations, 2012 CFR

2012-10-01

... THE INTERIOR (CONTINUED) MANAGEMENT OF FISHERIES CONSERVATION AREAS HUNTING AND FISHING ON NATIONAL... hatchery areas may be opened to sport fishing when such activity is not detrimental to the propagation and...

50 CFR 71.11 - Opening of national fish hatchery areas to fishing.

Code of Federal Regulations, 2011 CFR

2011-10-01

... THE INTERIOR (CONTINUED) MANAGEMENT OF FISHERIES CONSERVATION AREAS HUNTING AND FISHING ON NATIONAL... hatchery areas may be opened to sport fishing when such activity is not detrimental to the propagation and...

Physiological development and vulnerability to Ceratomyxa shasta of fall-run Chinook Salmon in the Upper Klamath River Watershed

USGS Publications Warehouse

Maule, Alec G.; Vanderkooi, Scott P.; Hamilton, John B; Stocking , Richard; Bartholomew, Jerri

2009-01-01

We evaluated a stock for restoring runs of fall Chinook salmon Oncorhynchus tshawytscha in the Upper Klamath River basin by monitoring its development in Iron Gate Hatchery and in net-pens in the Williamson River and Upper Klamath Lake in Oregon. We transferred age-1 hatchery fall Chinook salmon to net-pens in October 2005 and age-0 fall Chinook salmon in May 2006. Indices of smolt development were assessed in the hatchery and after 3 and 14 d in net-pens. Based on gill Na+, K+-ATPase activity and plasma thyroxine (T4) concentration, age-1 Chinook salmon were not developing smolt characteristics in the hatchery during October. Fish transferred to the river or lake had increased plasma cortisol in response to stress and increased T4 accompanying the change in water, but they did not have altered development. Variables in the age-0 Chinook salmon indicated that the fish in the hatchery were smolting. The fish in the river net-pens lost mass and had gill ATPase activity similar to that of the fish in the hatchery, whereas the fish transferred to the lake gained mass and length, had reduced condition factor, and had higher gill ATPase than the fish in the river. These results, along with environmental variables, suggest that the conditions in the lake were more conducive to smoltification than those in the river and thus accelerated the development of Chinook salmon. No Chinook salmon in the hatchery or either net-pen became infected with the myxosporean parasite Ceratomyxa shasta (the presence of which in the river and lake was confirmed) during either trial or when held for 90 d after a 10-d exposure in net-pens (2006 group). We concluded that that there is little evidence of physiological impairment or significant upriver vulnerability to C. shasta among this stock of fall Chinook salmon that would preclude them from being reintroduced into the Upper Klamath River basin.

Fin development in stream- and hatchery-reared Atlantic salmon

USGS Publications Warehouse

Pelis, Ryan M.; McCormick, S.D.

2003-01-01

To determine the effect of development and environment on fin growth, we measured fin lengths of juvenile Atlantic salmon (Salmo salar) from two hatcheries (August, October and April-May), stream-reared fish (July and October) stocked as fry into two tributaries, and smelts from the main stem of the Connecticut River (May). For stream-reared parr, there was a linear relationship between the dorsal, caudal and anal fins with fork length, while the pectoral, pelvic and adipose fins exhibited a curvilinear relationship with fork length. Parr from a high gradient stream had larger caudal fins than fish from a low gradient stream, but other fins did not differ. Regression lines for the fins of stream-reared smelts were all linear when fin length was regressed against fork length. Stream-reared parr had larger pectoral, pelvic and anal fins than smolts of similar size while dorsal and caudal fin lengths did not differ. Regression equations formulated using the fins of stream-reared parr were used to calculate the percent difference (100 x observed fin length/expected) in fin lengths between stream- and hatchery-reared parr. The pelvic, adipose, caudal and anal fins of hatchery-reared parr showed no signs of degeneration by the first sampling period 7 months after hatching, whereas degeneration in the pectoral (13-20%) and dorsal (15-18%) fins was evident at this time. By the end of the study, degeneration was present in every fin except the adipose, with the pectoral (35-65%) and dorsal (32-58%) fins exhibiting the greatest amount of fin loss. All fins of hatchery-reared parr became shorter with time. There were minor differences in fin degeneration among parr from the two hatcheries, but the overall pattern of decreasing fin size was similar, indicating a common cause of fin degeneration. Comparison of stream- and hatchery-reared fish is a valuable means of determining the impact of captive environments on fin growth.

NPDES Permit for Leadville National Fish Hatchery in Colorado

EPA Pesticide Factsheets

Under National Pollutant Discharge Elimination System permit number CO-0000582, the U.S. Department of the Interior, Fish and Wildlife Service is authorized to discharge from its Leadville National Fish Hatchery wastewater treatment facility in Colorado.

Standardized seawater rearing of chinook salmon smolts to evaluate hatchery practices showed low statistical power

USGS Publications Warehouse

Palmisano, Aldo N.; Elder, N.E.

2001-01-01

We examined, under standardized conditions, seawater survival of chinook salmon Oncorhynchus tshawytscha at the smolt stage to evaluate the experimental hatchery practices applied to their rearing. The experimental rearing practices included rearing fish at different densities; attempting to control bacterial kidney disease with broodstock segregation, erythromycin injection, and an experimental diet; rearing fish on different water sources; and freeze branding the fish. After application of experimental rearing practices in hatcheries, smolts were transported to a rearing facility for about 2-3 months of seawater rearing. Of 16 experiments, 4 yielded statistically significant differences in seawater survival. In general we found that high variability among replicates, plus the low numbers of replicates available, resulted in low statistical power. We recommend including four or five replicates and using ?? = 0.10 in 1-tailed tests of hatchery experiments to try to increase the statistical power to 0.80.

Yakima/Klickitat Fisheries Project Monitoring and Evaluation, Final Report For the Performance Period May 1, 2008 through April 30, 2009.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sampson, Melvin R.

2009-07-30

The Yakima-Klickitat Fisheries Project (YKFP) is a joint project of the Yakama Nation (lead entity) and the Washington State Department of Fish and Wildlife (WDFW) and is sponsored in large part by the Bonneville Power Administration (BPA) with oversight and guidance from the Northwest Power and Conservation Council (NPCC). It is among the largest and most complex fisheries management projects in the Columbia Basin in terms of data collection and management, physical facilities, habitat enhancement and management, and experimental design and research on fisheries resources. Using principles of adaptive management, the YKFP is attempting to evaluate all stocks historically presentmore » in the Yakima subbasin and apply a combination of habitat restoration and hatchery supplementation or reintroduction, to restore the Yakima Subbasin ecosystem with sustainable and harvestable populations of salmon, steelhead and other at-risk species. The original impetus for the YKFP resulted from the landmark fishing disputes of the 1970s, the ensuing legal decisions in United States versus Washington and United States versus Oregon, and the region's realization that lost natural production needed to be mitigated in upriver areas where these losses primarily occurred. The YKFP was first identified in the NPCC's 1982 Fish and Wildlife Program (FWP) and supported in the U.S. v Oregon 1988 Columbia River Fish Management Plan (CRFMP). A draft Master Plan was presented to the NPCC in 1987 and the Preliminary Design Report was presented in 1990. In both circumstances, the NPCC instructed the Yakama Nation, WDFW and BPA to carry out planning functions that addressed uncertainties in regard to the adequacy of hatchery supplementation for meeting production objectives and limiting adverse ecological and genetic impacts. At the same time, the NPCC underscored the importance of using adaptive management principles to manage the direction of the Project. The 1994 FWP reiterated the importance of proceeding with the YKFP because of the added production and learning potential the project would provide. The YKFP is unique in having been designed to rigorously test the efficacy of hatchery supplementation. Given the current dire situation of many salmon and steelhead stocks, and the heavy reliance on artificial propagation as a recovery tool, YKFP monitoring results will have great region-wide significance. Supplementation is envisioned as a means to enhance and sustain the abundance of wild and naturally-spawning populations at levels exceeding the cumulative mortality burden imposed on those populations by habitat degradation and by natural cycles in environmental conditions. A supplementation hatchery is properly operated as an adjunct to the natural production system in a watershed. By fully integrating the hatchery with a naturally-producing population, high survival rates for the component of the population in the hatchery can raise the average abundance of the total population (hatchery component + naturally-producing component) to a level that compensates for the high mortalities imposed by human development activities and fully seeds the natural environment. The objectives of the YKFP are to: use Ecosystem Diagnosis and Treatment (EDT) and other modeling tools to facilitate planning for project activities, enhance existing stocks, re-introduce extirpated stocks, protect and restore habitat in the Yakima Subbasin, and operate using a scientifically rigorous process that will foster application of the knowledge gained about hatchery supplementation and habitat restoration throughout the Columbia River Basin. The YKFP is still in the early stages of evaluation, and as such the data and findings presented in this report should be considered preliminary until results are published in the peer-reviewed literature. The following is a brief summary of current YKFP activities by species.« less

NPDES Permit for Hotchkiss National Fish Hatchery in Colorado

EPA Pesticide Factsheets

The U.S. Department of the Interior, Fish and Wildlife Service is authorized to discharge from outfalls at its Hotchkiss National Fish Hatchery wastewater treatment facility to the North Fork of the Gunnison River in Delta County, Colorado.

"Research to Improve the Efficacy of Captive Broodstock Programs and Advance Hatchery Reform Throughout the Columbia River Basin." [from the Abstract], 2007-2008 Annual Progress Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Berejikian, Barry A.

This project was developed to conduct research to improve the efficacy of captive broodstock programs and advance hatchery reform throughout the Columbia river basin. The project has three objectives: (1) maintain adaptive life history characteristics in Chinook salmon, (2) improve imprinting in juvenile sockeye salmon, and (3) match wild phenotypes in Chinook and sockeye salmon reared in hatcheries. A summary of the results are as follows: Objective 1: Adult and jack Chinook salmon males were stocked into four replicate spawning channels at a constant density (N = 16 per breeding group), but different ratios, and were left to spawn naturallymore » with a fixed number of females (N = 6 per breeding group). Adult males obtained primary access to females and were first to enter the nest at the time of spawning. Jack male spawning occurred primarily by establishing satellite positions downstream of the courting pair, and 'sneaking' into the nest at the time of spawning. Male dominance hierarchies were fairly stable and strongly correlated with the order of nest entry at the time of spawning. Spawning participation by jack and adult males is consistent with a negative frequency dependent selection model, which means that selection during spawning favors the rarer life history form. Results of DNA parentage assignments will be analyzed to estimate adult-to-fry fitness of each male. Objective 2: To determine the critical period(s) for imprinting for sockeye salmon, juvenile salmon were exposed to known odorants at key developmental stages. Molecular assessments of imprinting-induced changes in odorant receptor gene expression indicated that regulation of odorant expression is influenced by developmental status and odor exposure history. The results suggest that sockeye salmon are capable of imprinting to homing cues during the developmental periods that correspond to several of current release strategies employed as part of the Captive Broodstock program (specifically, planting eyed eggs, fall and smolt releases into the lake) appear to be appropriate for successful homing of sockeye in Redfish Lake. Also, our findings indicated that sockeye salmon were capable of olfactory imprinting at multiple life stages and over varying exposure durations. Fish exposed to odors just prior to smolting showed the strongest attraction to the imprinting odor arginine and this period corresponds to the period of highest plasma thyroxine levels and increased BAAR receptor mRNA in juveniles. Objective 3: Spring Chinook salmon were exposed to three different photoperiods and three feed rations at the button-up stage of development. Both photoperiod at emergence and ration post-ponding affected the number of males maturing at age one. Nearly 70% of the males in the early emergence and satiation fed group matured after the first year of rearing, while none of the fish reared on late emergence photoperiod (equivalent to emergence on May 1) matured during this time irrespective of ration treatment. Within the early emergence groups, reducing growth using ration (low or high) appeared to reduce the number of males maturing at age one from 70% to 40-50%. Maturation rates of fish that emerged in a photoperiod equivalent to mid-February (middle emergence) ranged from 10-25%. Together these data indicate that the seasonal timing of fry emergence and growth after ponding can alter life history patterns in spring Chinook salmon. The results imply that hatchery rearing practices that alter seasonal timing of fry emergence can have drastic effects on life history patterns in juvenile Chinook salmon. All three objectives are on-going and will result in recommendations (at the end of the FY 2009 performance period) to advance hatchery reforms in conventional and captive broodstock programs.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Novotny, Anthony J.; Zaugg, Waldo S.

The main functions of the National Marine Fisheries Service (NMFS) Aquaculture Task biologists and contractual scientists involved in the 1978 homing studies were primarily a surveillance of fish physiology, disease, and relative survival during culture in marine net-pens, to determine if there were any unusual factors that might effect imprinting and homing behavior. The studies were conducted with little background knowledge of the implications of disease and physiology on imprinting and homing in salmonids. Hatcheries and stocks sampled are listed in Table 1. The health status of the stocks was quite variable as could be expected. The Dworshak and Wellsmore » Hatcheries steelhead suffered from some early stresses in seawater, probably osmoregulatory. The incidences of latent BKD in the Wells and Chelan Hatcheries steelhead and Kooskia Hatchery spring chinook salmon were extremely high, and how these will effect survival in the ocean is not known. Gill enzyme activity in the Dworshak and Chelan Hatcheries steelhead at release was low. Of the steelhead, survival in the Tucannon Hatchery stock will probably be the highest, with Dworshak Hatchery stock the lowest. The analyses conducted by the veterinary pathologist indicate that overall there was no evidence of serious pathological conditions that might be disastrous to any given stock, but at this time it is also difficult to interpret the results of certain types of clinical pathology that have either not been previously reported or extensively studied. For example, if the 77% incidence of basophillic granular organisms in the gills of the Carson coho salmon does represent an infestation of microsporidian protozoan parasites, is the intensity of infestation severe enough to cause irreparable damage that might affect survival? The results of the viral assays are questionable because the Rangen Laboratory is the only one that found evidence of viruses in these stocks (however, the veterinary pathologist did find evidence of a pox-type virus in one kidney from the Kooskia Hatchery spring chinook salmon). Secondly, even if the virus identification were substantiated, we cannot be sure of the significance of positive test results. However, this variation is food for thought in how survival of individual stocks might be improved in the future through a closer examination of dietary and environmental requirements, and monitoring the incidence of sub-clinical diseases by random sub-sampling of populations.« less

9 CFR 147.23 - Hatchery sanitation.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 9 Animals and Animal Products 1 2010-01-01 2010-01-01 false Hatchery sanitation. 147.23 Section 147.23 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE LIVESTOCK IMPROVEMENT AUXILIARY PROVISIONS ON NATIONAL POULTRY IMPROVEMENT PLAN Sanitation...

Short-term physiological responses of wild and hatchery-produced red drum during angling

USGS Publications Warehouse

Gallman, E.A.; Isely, J.J.; Tomasso, J.R.; Smith, T.I.J.

1999-01-01

Serum cortisol concentrations, plasma glucose concentrations, plasma lactate concentrations, and plasma osmolalities increased in red drum Sciaenops ocellatus (26.0-65.5 cm total length) during angling in estuarine waters (17-33 g/L salinity, 21-31??C). Angling time varied from as fast as possible (10 s) to the point when fish ceased resisting (up to 350 s). The increases in the physiological characteristics were similar in wild and hatchery-produced fish. This study indicates that hatchery-produced red drum may be used in catch-and-release studies to simulate the responses of wild fish.

Recycling ground water in Waushara County, Wisconsin : resource management for cold-water fish hatcheries

USGS Publications Warehouse

Novitzki, R.P.

1976-01-01

Other recharge-recycling schemes can also be evaluated. Estimating the recycling efficiency (of recharge ponds, trenches, spreading areas, or irrigated fields) provides a basis for predicting water-level declines, the concentration of conservative ions (conservative in the sense that no reaction other than mixing occurs to change the character of the ion being considered) in the water supply and in the regional ground-water system, and the temperature of the water supply. Hatchery development and management schemes can be chosen to optimize hatchery productivity or minimize operation costs while protecting the ground-water system.

Abundance of host fish and frequency of glochidial parasitism in fish assessed in field and laboratory settings and frequency of juvenile mussels or glochidia recovered from hatchery-held fish, central and southeastern Texas, 2012-13

USGS Publications Warehouse

Braun, Christopher L.; Stevens, Charrish L.; Echo-Hawk, Patricia D.; Johnson, Nathan A.; Moring, James B.

2014-01-01

A total of 19 fish species collected at nine sites was submitted to the hatchery in 2013, and 14 of these species had juvenile mussels or glochidia that were recovered at the hatchery. The three most productive species, in terms of the average number of juvenile mussels or glochidia recovered, were longear sunfish, spotted bass, and largemouth bass, each of which averaged more than two juvenile mussels or glochidia recovered per individual.

Steelhead Supplementation in Idaho Rivers, 1993-1999 Summary Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Byrne, Alan

2001-02-01

The Steelhead Supplementation Study has conducted field experiments since 1993 that assess the ability of hatchery stocks to reestablish natural populations. We have stocked hatchery adult steelhead Oncorhynchus mykiss trapped at Sawtooth Fish Hatchery in Beaver Creek yearly and Frenchman creeks when enough fish were available. We stocked Dworshak Hatchery stock fingerlings in the South Fork Red River from 1993 to 1996 and smolts in Red River from 1996 to 1999. Although results from all experiments are not complete, preliminary findings indicate that these hatchery stocks will not reestablish natural steelhead populations. We focused most of our effort on monitoringmore » and evaluating wild steelhead stocks. We operated a temporary weir to estimate the wild steelhead escapement in Fish Creek, a tributary of the Lochsa River. We snorkeled streams to monitor juvenile steelhead abundance, captured and tagged steelhead with Passive Integrated Transponder (PIT) tags, and recorded stream temperatures in the Clearwater and Salmon River drainages. We operated screw traps in five to ten streams each year. We have documented growth rates in Fish and Gedney creeks, age of parr in Fish Creek, Gedney Creek, Lick Creek, and Rapid River, and documented parr and smolt migration characteristics. This report summarizes our effort during the years 1993 to 1999.« less

Poultry hatcheries as potential reservoirs for antimicrobial-resistant Escherichia coli: A risk to public health and food safety.

PubMed

Osman, Kamelia M; Kappell, Anthony D; Elhadidy, Mohamed; ElMougy, Fatma; El-Ghany, Wafaa A Abd; Orabi, Ahmed; Mubarak, Aymen S; Dawoud, Turki M; Hemeg, Hassan A; Moussa, Ihab M I; Hessain, Ashgan M; Yousef, Hend M Y

2018-04-11

Hatcheries have the power to spread antimicrobial resistant (AMR) pathogens through the poultry value chain because of their central position in the poultry production chain. Currently, no information is available about the presence of AMR Escherichia coli strains and the antibiotic resistance genes (ARGs) they harbor within hatchezries. Therefore, this study aimed to investigate the possible involvement of hatcheries in harboring hemolytic AMR E. coli. Serotyping of the 65 isolated hemolytic E. coli revealed 15 serotypes with the ability to produce moderate biofilms, and shared susceptibility to cephradine and fosfomycin and resistance to spectinomycin. The most common β-lactam resistance gene was bla TEM , followed by bla OXA-1 , bla MOX -like , bla CIT -like , bla SHV and bla FOX . Hierarchical clustering of E. coli isolates based on their phenotypic and genotypic profiles revealed separation of the majority of isolates from hatchlings and the hatchery environments, suggesting that hatchling and environmental isolates may have different origins. The high frequency of β-lactam resistance genes in AMR E. coli from chick hatchlings indicates that hatcheries may be a reservoir of AMR E. coli and can be a major contributor to the increased environmental burden of ARGs posing an eminent threat to poultry and human health.

Expansion of Non-Native Brown Trout in South Europe May Be Inadvertently Driven by Stocking: Molecular and Social Survey in the North Iberian Narcea River

PubMed Central

Horreo, Jose L.; Abad, David; Dopico, Eduardo; Oberlin, Maud; Garcia-Vazquez, Eva

2015-01-01

The biological and anthropogenic (management) factors that may contribute to the expansion of non-native lineages in managed fish have been studied in this work taking brown trout (Salmo trutta) as a model species. The changes of users’ opinion about stocking was studied employing social science methodology (surveys). The evolution of hatchery stocks together with the outcome of stocking were analysed with two genetic tools: the LDH-C1* locus (marker of non-native stocks) and six microsatellite loci (for assignment of wild trout to the natural population or putative hatchery stocks). Consulted stakeholders were convinced of the correctness of releasing only native stocks, although in practice the hatcheries managed by them contained important proportions of non-native gene carriers. Our results suggest that allochthonous individuals perform better and grow faster in hatchery conditions than the native ones. We also find a dilution of the impact of this kind of suplementation in wild conditions. The use of only native individuals as hatchery breeders tested for the presence of non-native alleles previously to the artificial crosses must be a priority. Surveys can help steer policy making toward decisions that will be followed by the public, but they should not be used to justify science. PMID:26184162

Expansion of Non-Native Brown Trout in South Europe May Be Inadvertently Driven by Stocking: Molecular and Social Survey in the North Iberian Narcea River.

PubMed

Horreo, Jose L; Abad, David; Dopico, Eduardo; Oberlin, Maud; Garcia-Vazquez, Eva

2015-07-09

The biological and anthropogenic (management) factors that may contribute to the expansion of non-native lineages in managed fish have been studied in this work taking brown trout (Salmo trutta) as a model species. The changes of users' opinion about stocking was studied employing social science methodology (surveys). The evolution of hatchery stocks together with the outcome of stocking were analysed with two genetic tools: the LDH-C1* locus (marker of non-native stocks) and six microsatellite loci (for assignment of wild trout to the natural population or putative hatchery stocks). Consulted stakeholders were convinced of the correctness of releasing only native stocks, although in practice the hatcheries managed by them contained important proportions of non-native gene carriers. Our results suggest that allochthonous individuals perform better and grow faster in hatchery conditions than the native ones. We also find a dilution of the impact of this kind of suplementation in wild conditions. The use of only native individuals as hatchery breeders tested for the presence of non-native alleles previously to the artificial crosses must be a priority. Surveys can help steer policy making toward decisions that will be followed by the public, but they should not be used to justify science.

Protein profiles of hatchery egg shell membrane

USDA-ARS?s Scientific Manuscript database

Background: Eggshells, which consist largely of calcareous outer shell and shell membranes, constitute a significant part of poultry hatchery waste. The shell membranes (ESM) not only contain proteins that originate from egg whites but also from the developing embryos and different contaminants of m...

NPDES Draft Permit for Leadville National Fish Hatchery in Colorado

EPA Pesticide Factsheets

NPDES public notice, permit and statement of basis would authorize discharge of treated water from settling ponds of the Leadville National Fish Hatchery to an unnamed tributary to Hunt Gulch, which flows into Lake Fork, a tributary to the Arkansas River.

Stocking of Offsite Waters for Hungry Horse Dam Mitigation; Creston National Fish Hatchery, 2001-2002 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Maskill, Mark

2003-03-01

Mitigation Objective 1: Produce Native Westslope Cutthroat Trout at Creston NFH--Task: Acquire eggs and rear up to 100,000 Westslope Cutthroat trout annually for offsite mitigation stocking. Accomplishments: A total of 150,000 westslope cutthroat eggs (M012 strain) were acquired from the State of Montana Washoe Park State Fish Hatchery in July 2001 for this objective. Another 120,000 westslope cutthroat eggs were taken from feral fish at Rogers Lake in May of 2001 by the Creston Hatchery crew. The fish were reared using approved fish culture techniques as defined in the U.S. Department of the Interior Fish Hatchery Management guidelines. Post releasemore » survival and angler success is monitored annually by Montana Fish Wildlife and Parks (MFWP) and the Confederated Salish and Kootenai Tribe (CSKT). Stocking numbers and locations may vary yearly based on results of biological monitoring. Mitigation Objective 2: Produce Rainbow Trout at Creston NFH--Task: Acquire and rear up to 100,000 Rainbow trout annually for offsite mitigation in closed basin waters. Accomplishments: A total of 50,500 rainbow trout eggs (Arlee strain) were acquired from the State of Montana Arlee State Fish Hatchery in December 2001 for this objective. The fish were reared using approved fish culture techniques as defined in the U.S. Department of the Interior Fish Hatchery Management guidelines. Arlee rainbow trout are being used for this objective because the stocking locations are terminal basin reservoirs and habitat conditions and returns to creel are unsuitable for native cutthroat. Post release survival and angler success is monitored annually by the Confederated Salish and Kootenai Tribe (CSKT). Stocking numbers and locations may vary yearly based on results of biological monitoring.« less

Migratory patterns of hatchery and stream-reared Atlantic salmon Salmo salar smolts in the Connecticut River, U.S.A.

USGS Publications Warehouse

McCormick, Stephen D.; Haro, Alexander; Lerner, Darren T.; O'Dea, Michael F.; Regish, Amy M.

2014-01-01

The timing of downstream migration and detection rates of hatchery-reared Atlantic salmon Salmo salar smolts and stream-reared smolts (stocked 2 years earlier as fry) were examined in the Connecticut River (U.S.A.) using passive integrated transponder (PIT) tags implanted into fish and then detected at a downstream fish bypass collection facility at Turners Falls, MA (river length 192 km). In two successive years, hatchery-reared smolts were released in mid-April and early May at two sites: the West River (river length 241 km) or the Passumpsic (river length 450 km). Hatchery-reared smolts released higher in the catchment arrived 7 to 14 days later and had significantly lower detection rates than smolts stocked lower in the catchment. Hatchery-reared smolts released 3 weeks apart at the same location were detected downstream at similar times, indicating that early-release smolts had a lower average speed after release and longer residence time. The size and gill Na+/K+-ATPase (NKA) activity of smolts at the time of release were significantly greater for detected fish (those that survived and migrated) than for those that were not detected. Stream-reared pre-smolts (>11·5 cm) from four tributaries (length 261–551 km) were tagged in autumn and detected during smolt migration the following spring. Stream-reared smolts higher in the catchment arrived later and had significantly lower detection rates. The results indicate that both hatchery and stream-reared smolts from the upper catchment will arrive at the mouth of the river later and experience higher overall mortality than fish from lower reaches, and that both size and gill NKA activity are related to survival during downstream migration.

The anaesthesia of fish by high carbon-dioxide concentrations

USGS Publications Warehouse

1942-01-01

A practical and economical method for anaesthetizing adult salmon and steelhead trout in the fish trucks used in the Grand Coulee fish salvage program is described. The method consists in generating a predetermined carbon-dioxide concentration in the 1000-gallon tanks of the trucks through the successive addition of predissolved sodium bicarbonate and dilute sulphuric acid in proper quantities. Carbon-dioxide anaesthesia effectively solved the acute problem of species segregation in the fish salvage program and, with minor modifications, could be used with equal success in certain hatchery operations necessitating the handling of large fish.

Migrational Characteristics of Columbia Basin Salmon and Steelhead Trout, Part II, Smolt Monitoring Program, 1984 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

McConnaha, Willis E.

1985-07-01

The report describes the travel time of marked yearling and sub-yearling chinook salmon (Oncorhynchus tshawytscha), sockeye salmon (O. nerka), and steelhead trout (Salmo gairdneri) between points within the system, and reports the arrival timing and duration of the migrations for these species as well as coho salmon (O. kisutch). A final listing of 1984 hatchery releases is also included. 8 refs., 26 figs., 20 tabs.

Re-Introduction of Lower Columbia River Chum Salmon into Duncan Creek, 2003-2004 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hillson, Todd D.

2004-09-01

Currently, two methods of reintroduction are being simultaneously evaluated at Duncan Creek. Recolonization is occurring by introducing adult chum salmon from the Lower Gorge (LG) population into Duncan Creek and allowing them to naturally reproduce. The supplementation strategy required adults to be collected and artificially spawned, incubated, reared, and released at the mouth of Duncan Creek. All eggs from the artificial crossings at Washougal Hatchery were incubated and the fry reared to release size at the hatchery. The Duncan Creek chum salmon project was very successful in 2003-04, providing knowledge and experience that will improve program execution in future years.more » The gear used to collect adult brood stock was changed from tangle nets to beach seines. This increased efficiency and the speed at which adults could be processed in the field, and most likely reduced stress on the adults handled. Certain weaknesses exposed in past seasons still exist and new ones were exposed (e.g. inadequate incubation and rearing space at Washougal Hatchery for any large salvage operation and having to move the rearing troughs outside the raceway in 2004). Egg-to-fry survival rates of 64% and 58% showed that the channels are functioning at the upper end of what can be expected from them. Possibly the most important event this season was the ability to strontium mark and release all naturally-produced fry from the spawning channels. Channel and floodplain modifications reduced the likelihood that floods will damage the channels and negatively impact survival rates.« less

PubMed Central

Lallier, R.; Olivier, G.; Chartier, P.; Turcotte, C.; Dionet, B.; Paulhus, P.

1981-01-01

Presence of the bacterial kidney disease in salmonid fish in Quebec During the summers of 1979 and 1980, wild and hatchery fish were analysed for the presence of the bacterial kidney disease (BKD) agent in salmonid fish in Quebec by the indirect immunofluorescence technique. The causative agent of BKD was detected in all hatcheries tested. Ten to 25% of the fish were positive. The presence of this agent was independent of age and species. We were unable to detect the BKD in fish from the rivers in the northern part of Quebec (over the 50th parallel). The first detection of BKD in Quebec was made in the spring of 1979 in a hatchery. A high mortality occurred in fish over a year old. The majority of the fish were positive by immunofluorescence and the bacteriun was isolated from some fish. Three weeks before the disease appeared, six ponds received fish from this hatchery. No mortality was observed in those ponds and in the middle of the summer the percentage of carrier fish by immunofluorescence was approximately 20%. PMID:7340922

Downstream migration and multiple dam passage by Atlantic Salmon smolts

USGS Publications Warehouse

Nyqvist, D.; McCormick, Stephen; Greenberg, L.; Ardren, W.R.; Bergman, E.; Calles, O.; Castro-Santos, Theodore R.

2017-01-01

The purpose of this study was to investigate behavior and survival of radio-tagged wild and hatchery-reared landlocked Atlantic Salmon Salmo salar smolts as they migrated past three hydropower dams equipped with fish bypass solutions in the Winooski River, Vermont. Among hatchery-reared smolts, those released early were more likely to initiate migration and did so after less delay than those released late. Once migration was initiated, however, the late-released hatchery smolts migrated at greater speeds. Throughout the river system, hatchery-reared fish performed similarly to wild fish. Dam passage rates varied between the three dams and was highest at the dam where unusually high spill levels occurred throughout the study period. Of the 50 fish that did migrate downstream, only 10% managed to reach the lake. Migration success was low despite the presence of bypass solutions, underscoring the need for evaluations of remedial measures; simply constructing a fishway is not synonymous with providing fish passage.

PEPA-1* genotype affects return rate for hatchery steelhead

USGS Publications Warehouse

Reisenbichler, R.R.; Hayes, M.C.; Rubin, S.P.; Wetzel, L.A.; Baker, B.M.

2006-01-01

Allozymes continue to be useful as genetic markers in a variety of studies; however, their utility often hinges on the selective neutrality of the allelic variation. Our study tested for neutrality between the two most common alleles (*100 and *110) at the cytosol nonspecific dipeptidase locus (PEPA-1*) in steelhead Oncorhynchus mykiss from Dworshak National Fish Hatchery in Idaho. We tested for differential growth and survival among fish with the * 100/100, *100/ 110, and *110/110 genotypes rearing in a hatchery or a natural stream. We repeated the study for two year-classes, using heterozygous (*100/110) adults to make the experimental crosses. This design avoided differences in family contribution among genotypes because each cross produced all three genotypes. We divided the progeny from each family into two groups. One group was reared in a hatchery for 1 year and then released for migration to the sea and subsequent return to the hatchery as adults. The other group was released into a natural stream and monitored for 3 years. We found no significant differences in size or survival among PEPA-1* genotypes for either the naturally reared fish or the hatchery-reared fish immediately prior to release as smolts. For females, survival to returning adult also was similar among genotypes; however, hatchery-reared males with the *110/110 genotype returned at a higher rate than did males with the *100/ 100 genotype; heterozygous males were intermediate. These results indicate that selection occurs at the PEPA-1* locus or at one or more loci tightly linked to it. The finding of nearly equal frequencies for these two alleles in the source population suggests that selection differentials among genotypes reverse or vary from year to year; otherwise, steady directional selection would drive the *100 allele to low frequencies or extinction. Locus PEPA-1* seems inappropriate for genetic marks in studies of steelhead that span the full life cycle and probably should be avoided for any portion of the life cycle. Inferences about gene flow and population structure from studies that are substantially influenced by PEPA-1* allele frequencies might be misleading. ?? Copyright by the American Fisheries Society 2006.

Differential survival among sSOD-1* genotypes in Chinook Salmon

USGS Publications Warehouse

Hayes, Michael C.; Reisenbichler, Reginald R.; Rubin, Stephen P.; Wetzel, Lisa A.; Marshall , Anne R.

2011-01-01

Differential survival and growth were tested in Chinook salmon Oncorhynchus tshawytscha expressing two common alleles, *–100 and *–260, at the superoxide dismutase locus (sSOD-1*). These tests were necessary to support separate studies in which the two alleles were used as genetic marks under the assumption of mark neutrality. Heterozygous adults were used to produce progeny with –100/–100, –100/–260, and –260/–260 genotypes that were reared in two natural streams and two hatcheries in the states of Washington and Oregon. The latter also were evaluated as returning adults. In general, the genotype ratios of juveniles reared at hatcheries were consistent with high survival and little or no differential survival in the hatchery. Adult returns at one hatchery were significantly different from the expected proportions, and the survival of the –260/–260 genotype was 0.56–0.89 times that of the –100/–100 genotype over four year-classes. Adult returns at a second hatchery (one year-class) were similar but not statistically significant: survival of the –260/–260genotype relative to the –100/–100 genotype was 0.76. The performance of the heterozygote group was intermediate at both hatcheries. Significant differences in growth were rarely observed among hatchery fish (one year-class of juveniles and one age-class of adult males) but were consistent with greater performance for the –100/–100 genotype. Results from two groups of juveniles reared in streams (one year-class from each stream) suggested few differences in growth, but the observed genotype ratios were significantly different from the expected ratios in one stream. Those differences were consistent with the adult data; survival for the –260/–260 genotype was 76% of that of the –100/–100 genotype. These results, which indicate nonneutrality among sSOD-1* genotypes, caused us to modify our related studies and suggest caution in the interpretation of results and analyses in which allozyme marks are assumed to be neutral.

Effect of size of unfed fry at release on survival and growth of juvenile steelhead in streams and a hatchery (Study sites: Dworshak Hatchery, Silver Creek, and Twenty-Mile Creek; Stock: Dworshak hatchery; Year classes: 1996 and 1999): Chapter 7

USGS Publications Warehouse

Rubin, Stephen P.; Reisenbichler, Reginald R.; Wetzel, Lisa A.; Stenberg, Karl D.

2012-01-01

We tested whether differences in size of unfed fry at release affected survival and growth of juvenile steelhead Oncorhynchus mykiss in hatchery ponds and streams. Differences in fry size were produced by selecting and spawning females that differed in the mean size of their eggs. Experiments were initiated in 1996 and 1999 with hatchery steelhead returning to the Clearwater River, Idaho. Fry size groups were small (mean fork length=26.7 mm, mean weight=0.149 g) and large (28.1 mm, 0.197 g) in 1996 and small (27.5 mm, 0.159 g), medium (28.2 mm, 0.190 g), and large (28.9 mm, 0.201 g) in 1999. Survival in the hatchery to near the end of the standard one year rearing period and in streams to late summer, three months after release, was higher for the large than for the small group in 1996 but was similar among groups in 1999. Survival in streams to age - 1 appeared to show the same pattern (large>small in 1996; no difference in 1999), but differences among fry size groups in emigration as well as mortality may have been involved. The inconsistency between years may have resulted because some 1996 female parents of the small group had exceptionally small eggs and were a year younger than the other 1996 females and all 1999 females. Growth in the hatchery was similar among groups in both years whereas growth in streams was faster for the large than for the small group in both years and intermediate for the medium group in 1999. Growth in streams appeared to be limited by food availability. Initially large fry probably out - competed smaller fry for limited food; however, we found no evidence that dispersal from release sites or emigration from streams was caused by competitive displacement of small by larger fish. 

Upstream Passage, Spawning, and Stock Identification of Fall Chinook in the Snake River, 1992 and 1993 : Final Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Blankenship, H. Lee; Mendel, Glen W.

This final report of the 3-year study summarizes activities and results for 1993. Study objectives were to: (1) determine the source of losses (or accounting errors) for adult chinook salmon between Ice Harbor Dam (IHR) and Lower Granite Dam (LGR), and upstream of LGR in the Snake River; (2) identify spawning locations upstream of LGR for calibration of aerial redd surveys, redd habitat mapping, carcass recovery for genetic stock profile analysis, and correction of estimated adult/redd ratios; and (3) estimate passage and migration times at Snake River. 200 fall chinook salmon were radio tagged and tracked with aerial, fixed-site, andmore » ground mobile tracking. Fish were released upstream of IHR at Charbonneau Park (CHAR). 190 of the fish were tracked or relocated away from CHAR. 59 fish descended to below IHR without crossing Lower Monumental Dam (LMO). Another 128 salmon passed upstream of LMO without falling back at IHR. Only 80 salmon passed Little Goose Dam (LGO) without falling back at a downstream dam; 66 of these fish passed LGR. Many fish that fell back reascended the dams. A total of 72 salmon released at CHAR passed upstream of LGR, including fish that had fallen back and reascended a dam. Over 80 percent of the salmon that entered Lyons Ferry Hatchery each year had reached LGO before descending to the hatchery. Extensive wandering was documented between LMO and upstream of LGR before salmon entered Lyons Ferry Hatchery or the Tucannon River. In 1993, 41 salmon were found to be of hatchery origin when recovered. These fish entered Lyons Ferry Hatchery with similar movements to unmarked salmon. Each year a few salmon have remained near the hatchery without entering, which suggests the hatchery may have inadequate attraction flows. Fall chinook passed lower Snake River dams in 2-5 days each on average. Median travel times through LMO and LGO were 1.0-1.3 days each, which was slower than for spring chinook or steelhead in 1993. 5 refs., 21 figs., 20 tabs.« less

Sedimentation in Hot Creek in vicinity of Hot Creek Fish Hatchery, Mono County, California

USGS Publications Warehouse

Burkham, D.E.

1978-01-01

An accumulation of fine-grained sediment in Hot Creek downstream from Hot Creek Fish Hatchery, Mono County, Calif., created concern that the site may be deteriorating as a habitat for trout. The accumulation is a phenomenon that probably occurs naturally in the problem reach. Fluctuation in the weather probably is the basic cause of the deposition of fine-grained sediment that has occurred since about 1970. Man 's activities and the Hot Creek Fish Hatchery may have contributed to the problem; the significance of these factors, however, probably was magnified because of drought conditions in 1975-77. (Woodard-USGS)

Coded wire tag recoveries from pink salmon in Prince William sound salmon fisheries, 1993. Restoration project 93067. Exxon Valdez oil spill restoration project final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sharr, S.; Peckham, C.J.; Sharp, D.G.

1995-11-01

Coded wire tags applied to pink salmon fry in 1992 at four hatcheries in Prince William Sound were recovered in the commercial catch of 1993 and used to provide inseason estimates of hatchery contributions. These estimates were used by fishery managers to target the numerically superior hatchery returns, and reduce the pressure on oil-damaged wild stocks. Inseason estimates were made in two stages. The postseason analysis revealed that of a catch of 3.51 million pink salmon, 1.12 million were estimated to be of wild origin.

9 CFR 145.6 - Specific provisions for participating hatcheries.

Code of Federal Regulations, 2011 CFR

2011-01-01

... hatcheries. 145.6 Section 145.6 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE LIVESTOCK IMPROVEMENT NATIONAL POULTRY IMPROVEMENT PLAN FOR BREEDING POULTRY... for sale under Plan terminology should be normal and typical of the breed, variety, cross, or other...

9 CFR 145.9 - Terminology and classification; hatcheries and dealers.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 9 Animals and Animal Products 1 2010-01-01 2010-01-01 false Terminology and classification; hatcheries and dealers. 145.9 Section 145.9 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE LIVESTOCK IMPROVEMENT NATIONAL POULTRY IMPROVEMENT PLAN FOR BREEDING...

9 CFR 145.9 - Terminology and classification; hatcheries and dealers.

Code of Federal Regulations, 2011 CFR

2011-01-01

... 9 Animals and Animal Products 1 2011-01-01 2011-01-01 false Terminology and classification; hatcheries and dealers. 145.9 Section 145.9 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE LIVESTOCK IMPROVEMENT NATIONAL POULTRY IMPROVEMENT PLAN FOR BREEDING...

9 CFR 145.6 - Specific provisions for participating hatcheries.

Code of Federal Regulations, 2010 CFR

2010-01-01

... hatcheries. 145.6 Section 145.6 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE LIVESTOCK IMPROVEMENT NATIONAL POULTRY IMPROVEMENT PLAN FOR BREEDING POULTRY... for sale under Plan terminology should be normal and typical of the breed, variety, cross, or other...

9 CFR 147.23 - Hatchery sanitation.

Code of Federal Regulations, 2013 CFR

2013-01-01

... rooms are provided for each of the four operations: Egg receiving, incubation and hatching, chick/poult processing, and egg tray and hatching basket washing. Traffic and airflow patterns in the hatchery should be... should be cleaned and sanitized after each use. (d) The hatching compartments of incubators, including...

9 CFR 147.23 - Hatchery sanitation.

Code of Federal Regulations, 2012 CFR

2012-01-01

... rooms are provided for each of the four operations: Egg receiving, incubation and hatching, chick/poult processing, and egg tray and hatching basket washing. Traffic and airflow patterns in the hatchery should be... should be cleaned and sanitized after each use. (d) The hatching compartments of incubators, including...

9 CFR 147.23 - Hatchery sanitation.

Code of Federal Regulations, 2014 CFR

2014-01-01

... rooms are provided for each of the four operations: Egg receiving, incubation and hatching, chick/poult processing, and egg tray and hatching basket washing. Traffic and airflow patterns in the hatchery should be... should be cleaned and sanitized after each use. (d) The hatching compartments of incubators, including...

9 CFR 145.9 - Terminology and classification; hatcheries and dealers.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 9 Animals and Animal Products 1 2014-01-01 2014-01-01 false Terminology and classification; hatcheries and dealers. 145.9 Section 145.9 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE LIVESTOCK IMPROVEMENT NATIONAL POULTRY IMPROVEMENT PLAN FOR BREEDING...

9 CFR 145.9 - Terminology and classification; hatcheries and dealers.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 9 Animals and Animal Products 1 2012-01-01 2012-01-01 false Terminology and classification; hatcheries and dealers. 145.9 Section 145.9 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE LIVESTOCK IMPROVEMENT NATIONAL POULTRY IMPROVEMENT PLAN FOR BREEDING...

9 CFR 145.9 - Terminology and classification; hatcheries and dealers.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 9 Animals and Animal Products 1 2013-01-01 2013-01-01 false Terminology and classification; hatcheries and dealers. 145.9 Section 145.9 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE LIVESTOCK IMPROVEMENT NATIONAL POULTRY IMPROVEMENT PLAN FOR BREEDING...

Hatchery mortalities of larval oysters caused by Vibrio tubiashii and Vibrio coralliilyticus

USDA-ARS?s Scientific Manuscript database

Hatchery production of bivalve shellfish has been hampered by the occasional presence of opportunistic pathogens, particularly Vibrio coralliilyticus and Vibrio tubiashii. The present study reports the results of several avenues of research to better define these pathogens and the roles they play i...

50 CFR 224.101 - Enumeration of endangered marine and anadromous species.

Code of Federal Regulations, 2011 CFR

2011-10-01

...(a) of the Act, as well as species listed under the Endangered Species Conservation Act of 1969 by... Atlantic Ocean, to the coast of Greenland. Included are all associated conservation hatchery populations used to supplement these natural populations; currently, such conservation hatchery populations are...

Epizootiology of the ectoparasitic protozoans Ichthyobodo salmonis and Trichodina truttae on wild chum salmon Oncorhynchus keta.

PubMed

Mizuno, Shinya; Urawa, Shigehiko; Miyamoto, Mahito; Saneyoshi, Hayato; Hatakeyama, Makoto; Koide, Nobuhisa; Ueda, Hiroshi

2017-10-18

Infestations of the ectoparasitic flagellate Ichthyobodo salmonis and the ciliate Trichodina truttae have caused acute mortalities of hatchery-reared juvenile chum salmon Oncorhynchus keta in Hokkaido, northern Japan. This study examined the epizootiology of I. salmonis and T. truttae on wild chum salmon as a possible infection source of the 2 parasitic protozoans in hatcheries. Infestations by both ectoparasites were detected on freshwater-adapted adult and juvenile chum salmon in all 4 rivers examined. This is the first study of an anadromous Pacific salmonid to report infestation of I. salmonis and T. truttae in adults returning for spawning. Among the marine-inhabiting phase of chum salmon, infestation with I. salmonis, but not T. truttae, was observed on adults and juveniles. The 2 protozoans were experimentally transmitted at the same time from wild to hatchery-reared chum salmon juveniles, and caused a high rate of mortality in the hatchery fish. In freshwater, the proliferation rate of T. truttae was greater than that of I. salmonis. These observations show that the euryhaline ectoparasite I. salmonis can infest chum salmon throughout their life cycle, in both river and ocean habitats, whereas T. truttae is able to infest these salmonids only in freshwater. Furthermore, wild chum salmon were shown to be a potential infestation source for both T. truttae and I. salmonis in hatchery fish.

Multistate outbreak of human Salmonella Typhimurium infections linked to live poultry from agricultural feed stores and mail-order hatcheries, United States 2013.

PubMed

Anderson, Tara C; Nguyen, Thai-An; Adams, Jennifer K; Garrett, Nancy M; Bopp, Cheryl A; Baker, Joe B; McNeil, Carrie; Torres, Paul; Ettestad, Paul J; Erdman, Matthew M; Brinson, Denise L; Gomez, Thomas M; Barton Behravesh, Casey

2016-12-01

Live poultry-associated salmonellosis is an emerging public health issue in the United States. Public and animal health officials collaborated to investigate one of the largest (356 cases, 39 states) of these outbreaks reported to date. A case was defined as illness in a person infected with the outbreak strain of Salmonella Typhimurium with illness onset between 1 March and 22 October 2013. The median patient age was seven years (range: < 1-87 years); 58% of ill persons were children ≤ 10 years, 51% were female, 25% were hospitalized; 189 (76%) of 250 patients reported live poultry exposure in the week before illness; and 149 (95%) of 157 reported purchasing live poultry from agricultural feed stores. Traceback investigations identified 18 live poultry sources, including 16 mail-order hatcheries. Environmental sampling was conducted at two mail-order hatcheries. One (2.5%) of 40 duplicate samples collected at one hatchery yielded the outbreak strain. Live poultry are an important source of human salmonellosis, particularly among children, highlighting the need for educational campaigns and comprehensive interventions at the mail-order hatchery and agricultural feed store levels. Prevention and control efforts depend on a One Health approach, involving cooperation between public and animal health officials, industry, health professionals, and consumers.

Augmented Fish Health Monitoring in Oregon, 1987-1988 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bauer, Jerry

1988-05-01

Diminished natural fish production in the Columbia River Basin has prompted increased artificial propagation to compensate both for losses of anadromous salmonids related to hydroelectric facilities and for other causes. The health and quality of artificially propagated smolts probably is a major influence on survival. Smolt survival varies greatly from one location to another, among different species and from one year to the next. Fish health monitoring is necessary to identify cause of mortality, assist in producing a healthy smolt, and provide a means for improving hatchery effectiveness. The Bonneville Power Administration (BPA) conducted a series of meetings to definemore » the minimum ''needed'' level of fish health monitoring, determine what was presently being done and what additional effort was needed in the Basin's 54 anadromous fish hatcheries. Funding for the additional effort in Oregon began June 2, 1987. The goal of this project is to increase smolt-to-adult survival by accomplishing the following: (1) increase monitoring for specific fish pathogens and fish health parameters; (2) measure hatchery water supply quality; (3) identify facility impediments to fish health; (4) create a database of hatchery and fish health information; (5) establish a technical steering committee to evaluate and refine the project annually; and (6) increase communication and technology application among personnel in hatcheries, research, management, other agencies and the public. 4 refs., 3 figs., 10 tabs.« less

An Enriched Environment Promotes Shelter-Seeking Behaviour and Survival of Hatchery-Produced Juvenile European Lobster (Homarus gammarus)

PubMed Central

Aspaas, Stian; Grefsrud, Ellen Sofie; Fernö, Anders; Jensen, Knut Helge; Trengereid, Henrik; Agnalt, Ann-Lisbeth

2016-01-01

The high loss of newly released hatchery-reared European lobster (Homarus gammarus) juveniles for stock enhancement is believed to be the result of maladaptive anti-predator behaviour connected to deprived stimuli in the hatchery environment. Our objective was to learn if an enriched hatchery environment enhances shelter-seeking behaviour and survival. In the “naïve” treatment, the juveniles were raised in single compartments without substrate and shelter whereas juveniles in the “exposed” treatment experienced substrate, shelter and interactions with conspecifics. Three experiments with increasing complexity were conducted. Few differences in shelter-seeking behaviour were found between treatments when one naïve or one exposed juvenile were observed alone. When observing interactions between one naïve and one exposed juvenile competing for shelter, naïve juveniles more often initiated the first aggressive encounter. The third experiment was set up to simulate a release for stock enhancement. Naïve and exposed juveniles were introduced to a semi-natural environment including substrate, a limited number of shelters and interactions with conspecifics. Shelter occupancy was recorded three times during a period of 35 days. Exposed juveniles occupied more shelters, grew larger and had higher survival compared with naïve juveniles. Our results demonstrate that experience of environmental complexity and social interactions increase shelter-seeking ability and survival in hatchery reared lobster juveniles. PMID:27560932

An Enriched Environment Promotes Shelter-Seeking Behaviour and Survival of Hatchery-Produced Juvenile European Lobster (Homarus gammarus).

PubMed

Aspaas, Stian; Grefsrud, Ellen Sofie; Fernö, Anders; Jensen, Knut Helge; Trengereid, Henrik; Agnalt, Ann-Lisbeth

2016-01-01

The high loss of newly released hatchery-reared European lobster (Homarus gammarus) juveniles for stock enhancement is believed to be the result of maladaptive anti-predator behaviour connected to deprived stimuli in the hatchery environment. Our objective was to learn if an enriched hatchery environment enhances shelter-seeking behaviour and survival. In the "naïve" treatment, the juveniles were raised in single compartments without substrate and shelter whereas juveniles in the "exposed" treatment experienced substrate, shelter and interactions with conspecifics. Three experiments with increasing complexity were conducted. Few differences in shelter-seeking behaviour were found between treatments when one naïve or one exposed juvenile were observed alone. When observing interactions between one naïve and one exposed juvenile competing for shelter, naïve juveniles more often initiated the first aggressive encounter. The third experiment was set up to simulate a release for stock enhancement. Naïve and exposed juveniles were introduced to a semi-natural environment including substrate, a limited number of shelters and interactions with conspecifics. Shelter occupancy was recorded three times during a period of 35 days. Exposed juveniles occupied more shelters, grew larger and had higher survival compared with naïve juveniles. Our results demonstrate that experience of environmental complexity and social interactions increase shelter-seeking ability and survival in hatchery reared lobster juveniles.

Capture locations and growth rates of Atlantic sturgeon in the Chesapeake Bay

USGS Publications Warehouse

Welsh, S.A.; Eyler, S.M.; Mangold, M.F.; Spells, A.J.

2002-01-01

Little information exists on temporal and spatial distributions of wild and hatchery-reared Atlantic sturgeon Acipenser oxyrinchus oxyrinchus in the Chesapeake Bay. Approximately 3,300 hatchery-reared Atlantic sturgeon comprised of two size groups were released into the Nanticoke River, a tributary of the Chesapeake Bay, on 8 July 1996. During January 1996-May 2000, 1099 Atlantic sturgeon were captured incidentally (i.e., bycatch) by commercial watermen in the Chesapeake Bay, including 420 hatchery-reared individuals. Wild and hatchery-reared Atlantic sturgeon were captured primarily in pound nets and gill nets. Biologists tagged each fish and recorded weight, length, and location of capture. Although two adults greater than 2000 mm fork length (FL) were captured in Maryland waters, wild sturgeon were primarily juveniles from Maryland and Virginia waters (415 and 259 individuals below 1000 mm FL, respectively). A growth rate of 0.565 mm/d (N = 15, SE = 0.081) was estimated for wild individuals (487-944 mm TL at release) at liberty from 30 to 622 d. The average growth of the group of hatchery-reared Atlantic sturgeon raised at 10??C exceeded that of the group raised at 17??C. Our distributional data based on capture locations are biased by fishery dependence and gear selectivity. These data are informative to managers, however, because commercial effort is widely distributed in the Chesapeake Bay, and little distributional data were available before this study.

"Research to Improve the Efficacy of Captive Broodstock Programs and Advance Hatchery Reform Throughout the Columbia River Basin." [from the Abstract], 2008-2009 Progress Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Berejikian, Barry A.

This project was developed to conduct research to improve the efficacy of captive broodstock programs and advance hatchery reform throughout the Columbia River Basin. The project has three objectives: (1) maintain adaptive life history characteristics in Chinook salmon, (2) improve imprinting in juvenile sockeye salmon, and (3) match wild phenotypes in Chinook and sockeye salmon reared in hatcheries. A summary of the results are as follows: Objective 1: The ratio of jack to adult male Chinook salmon were varied in experimental breeding populations to test the hypothesis that reproductive success of the two male phenotypes would vary with their relativemore » frequency in the population. Adult Chinook salmon males nearly always obtained primary access to nesting females and were first to enter the nest at the time of spawning. Jack male spawning occurred primarily by establishing satellite positions downstream of the courting pair, and 'sneaking' into the nest at the time of spawning. Male dominance hierarchies were fairly stable and strongly correlated with the order of nest entry at the time of spawning. Observed participation in spawning events and adult-to-fry reproductive success of jack and adult males was consistent with a negative frequency-dependent selection model. Overall, jack males sired an average of 21% of the offspring produced across a range of jack male frequencies. Implications of these and additional findings on Chinook salmon hatchery broodstock management will be presented in the FY 2009 Annual Report. Objective 2: To determine the critical period(s) for imprinting for sockeye salmon, juvenile salmon were exposed to known odorants at key developmental stages. Molecular assessments of imprinting-induced changes in odorant receptor gene expression indicated that regulation of odorant expression is influenced by developmental status and odor exposure history. Expression levels of basic amino acid receptor (BAAR) mRNA in the olfactory epithelium increased dramatically during final maturation in both Stanley Basin and Okanogan River sockeye. These increases appeared to be independent of odor exposure history, rising significantly in both arginine-naive and arginine-exposed fish. However, sockeye exposed to arginine during smolting demonstrated a larger increase in BAAR mRNA than arginine-naive fish. These results are consistent with the hypothesis that odorant receptors sensitive to home stream waters may be upregulated at the time of the homing migration and may afford opportunities to exploit this system to experimentally characterize imprinting success and ultimately identify hatchery practices that will minimize straying of artificially produced salmonids. Additional analysis of Sockeye salmon imprinting and further implications of these findings will be presented in the FY 2009 Annual Report. Objective 3: Photoperiod at emergence and ration after ponding were varied in Yakima River spring Chinook salmon to test the hypothesis that seasonal timing of emergence and growth during early stages of development alter seasonal timing of smoltification and age of male maturation. Fish reared under conditions to advance fry emergence and accelerate growth had the greatest variation in seasonal timing of smolting (fall, spring and summer) and highest rates of early male maturation with most males maturing at age 1 (35-40%). In contrast, fish with delayed emergence and slow growth had the least variation in phenotypes with most fish smolting as yearlings in the spring and no age-1 male maturation. Growth (not emergence timing) altered rates of age-2 male maturation. Results of this study demonstrate that altering fry development, as is often done in hatcheries, can profoundly affect later life history transitions and the range of phenotypes within a spring Chinook salmon population. Additional work in the next funding period will determine if these rearing regimes affected other aspects of smolt quality, which may affect ultimate survival upon ocean entry.« less

29 CFR 780.213 - Produce business.

Code of Federal Regulations, 2010 CFR

2010-07-01

... 29 Labor 3 2010-07-01 2010-07-01 false Produce business. 780.213 Section 780.213 Labor Regulations... Specific Situations Hatchery Operations § 780.213 Produce business. In some instances, hatcheries also engage in the produce business as such and commingle with the culled eggs and chickens other eggs and...

Nutritional supplement of hatchery eggshell membrane improves poultry performance and provides resistance against endotoxin stress

USDA-ARS?s Scientific Manuscript database

Eggshells are significant part of hatchery waste which consist of calcium carbonate crust, membranes, and proteins and peptides of embryonic origins along with other entrapped contaminants including microbes. We hypothesized that using this product as a nutritional additive in poultry diet may confe...

50 CFR 223.102 - Enumeration of threatened marine and anadromous species.

Code of Federal Regulations, 2012 CFR

2012-10-01

... townsendi Wherever found U.S.A. (Farallon Islands of CA) south to Mexico (Islas Revillagigedo) 50 FR 51252..., Lookingglass Hatchery, Upper Grande Ronde, Imnaha River, Big Sheep Creek, McCall Hatchery, Johnson Creek... found. Includes United States Florida, Puerto Rico, U.S. Virgin Islands, Navassa; and wider Caribbean...

Toxicity of Selected Mosquito Sprays to Channel Catfish Sac Fry

USDA-ARS?s Scientific Manuscript database

In the spring when channel catfish, Ictalurus punctatus, hatcheries are in full operation, the associated moisture and warm temperatures provide a haven for mosquitoes. Large swarms of biting mosquitoes in a hatchery can make the tedious work of egg-picking (i.e., removing dead and fungus-infested e...

29 CFR 780.213 - Produce business.

Code of Federal Regulations, 2012 CFR

2012-07-01

... 29 Labor 3 2012-07-01 2012-07-01 false Produce business. 780.213 Section 780.213 Labor Regulations... Specific Situations Hatchery Operations § 780.213 Produce business. In some instances, hatcheries also engage in the produce business as such and commingle with the culled eggs and chickens other eggs and...

29 CFR 780.213 - Produce business.

Code of Federal Regulations, 2014 CFR

2014-07-01

... 29 Labor 3 2014-07-01 2014-07-01 false Produce business. 780.213 Section 780.213 Labor Regulations... Specific Situations Hatchery Operations § 780.213 Produce business. In some instances, hatcheries also engage in the produce business as such and commingle with the culled eggs and chickens other eggs and...

29 CFR 780.213 - Produce business.

Code of Federal Regulations, 2013 CFR

2013-07-01

... 29 Labor 3 2013-07-01 2013-07-01 false Produce business. 780.213 Section 780.213 Labor Regulations... Specific Situations Hatchery Operations § 780.213 Produce business. In some instances, hatcheries also engage in the produce business as such and commingle with the culled eggs and chickens other eggs and...

29 CFR 780.213 - Produce business.

Code of Federal Regulations, 2011 CFR

2011-07-01

... 29 Labor 3 2011-07-01 2011-07-01 false Produce business. 780.213 Section 780.213 Labor Regulations... Specific Situations Hatchery Operations § 780.213 Produce business. In some instances, hatcheries also engage in the produce business as such and commingle with the culled eggs and chickens other eggs and...

Control of Saprolegniasis on sunshine bass eggs with copper sulfate

USDA-ARS?s Scientific Manuscript database

A major obstacle to successful hatchery production is water-mould (Saprolegniasis) growth on eggs. Copper sulfate (CuSO4) is commonly used to control Saprolegnia species in channel catfish hatcheries that use troughs, but the effectiveness of it on fish eggs hatched using different systems was not ...

Who’s your mama? Riverine hybridisation of threatened freshwater Trout Cod and Murray Cod

PubMed Central

Unmack, Peter J.; Dyer, Fiona J.; Lintermans, Mark

2016-01-01

Rates of hybridization and introgression are increasing dramatically worldwide because of translocations, restocking of organisms and habitat modifications; thus, determining whether hybridization is occuring after reintroducing extirpated congeneric species is commensurately important for conservation. Restocking programs are sometimes criticized because of the genetic consequences of hatchery-bred fish breeding with wild populations. These concerns are important to conservation restocking programs, including those from the Australian freshwater fish family, Percichthyidae. Two of the better known Australian Percichthyidae are the Murray Cod, Maccullochella peelii and Trout Cod, Maccullochella macquariensis which were formerly widespread over the Murray Darling Basin. In much of the Murrumbidgee River, Trout Cod and Murray Cod were sympatric until the late 1970s when Trout Cod were extirpated. Here we use genetic single nucleotide polymorphism (SNP) data together with mitochondrial sequences to examine hybridization and introgression between Murray Cod and Trout Cod in the upper Murrumbidgee River and consider implications for restocking programs. We have confirmed restocked riverine Trout Cod reproducing, but only as inter-specific matings, in the wild. We detected hybrid Trout Cod–Murray Cod in the Upper Murrumbidgee, recording the first hybrid larvae in the wild. Although hybrid larvae, juveniles and adults have been recorded in hatcheries and impoundments, and hybrid adults have been recorded in rivers previously, this is the first time fertile F1 have been recorded in a wild riverine population. The F1 backcrosses with Murray cod have also been found to be fertile. All backcrosses noted were with pure Murray Cod. Such introgression has not been recorded previously in these two species, and the imbalance in hybridization direction may have important implications for restocking programs. PMID:27812407

Matching watershed and otolith chemistry to establish natal origin of an endangered desert lake sucker

USGS Publications Warehouse

Strohm, Deanna D.; Budy, Phaedra; Crowl, Todd A.

2017-01-01

Stream habitat restoration and supplemental stocking of hatchery-reared fish have increasingly become key components of recovery plans for imperiled freshwater fish; however, determining when to discontinue stocking efforts, prioritizing restoration areas, and evaluating restoration success present a conservation challenge. In this study, we demonstrate that otolith microchemistry is an effective tool for establishing natal origin of the June Sucker Chasmistes liorus, an imperiled potamodromous fish. This approach allows us to determine whether a fish is of wild or hatchery origin in order to assess whether habitat restoration enhances recruitment and to further identify areas of critical habitat. Our specific objectives were to (1) quantify and characterize chemical variation among three main spawning tributaries; (2) understand the relationship between otolith microchemistry and tributary chemistry; and (3) develop and validate a classification model to identify stream origin using otolith microchemistry data. We quantified molar ratios of Sr:Ca, Ba:Ca, and Mg:Ca for water and otolith chemistry from three main tributaries to Utah Lake, Utah, during the summer of 2013. Water chemistry (loge transformed Sr:Ca, Ba:Ca, and Mg:Ca ratios) differed significantly across all three spawning tributaries. We determined that Ba:Ca and Sr:Ca ratios were the most important variables driving our classification models, and we observed a strong linear relationship between water and otolith values for Sr:Ca and Ba:Ca but not for Mg:Ca. Classification models derived from otolith element : Ca signatures accurately sorted individuals to their experimental tributary of origin (classification tree: 89% accuracy; random forest model: 91% accuracy) and determined wild versus hatchery origin with 100% accuracy. Overall, this study aids in evaluating the effectiveness of restoration, tracking progress toward recovery, and prioritizing future restoration plans for fishes of conservation concern. Our results have further application, such as identifying subpopulations that provide the greatest reproductive contribution to a metapopulation or finding the reproductive area and origin of invasive fishes.

Genetic variation in steelhead of Oregon and northern California

USGS Publications Warehouse

Reisenbichler, R.R.; McIntyre, J.D.; Solazzi, M.F.; Landino, S.W

1992-01-01

Steelhead Oncorhynchus mykiss from various sites between the Columbia River and the Mad River, California, were genetically characterized at 10 protein-coding loci or pairs of loci by starch gel electrophoresis. Fish from coastal streams differed from fish east of the Cascade Mountains and from fish of the Willamette River (a tributary of the Columbia River, west of the Cascade Mountains). Coastal steelhead from the northern part of the study area differed from those in the southern part. Genetic differentiation within and among drainages was not statistically significant; however, gene diversity analysis and the life history of steelhead suggested that fish from different drainages should be considered as separate populations. Genetic variation among fish in separate drainages was similar to that reported in northwestern Washington and less than that reported in British Columbia. Allele frequencies varied significantly among year-classes. Genetic variation within samples accounted for 98.3% of the total genetic variation observed in this study. Most hatchery populations differed from wild populations, suggesting that conservation of genetic diversity among and within wild populations could be facilitated by altering hatchery programs.

Tradeoffs between homing and habitat quality for spawning site selection by hatchery-origin Chinook salmon

USGS Publications Warehouse

Cram, Jeremy M.; Torgersen, Christian E.; Klett, Ryan S.; Pess, George R.; May, Darran; Pearsons, Todd N.; Dittman, Andrew H.

2013-01-01

Spawning site selection by female salmon is based on complex and poorly understood tradeoffs between the homing instinct and the availability of appropriate habitat for successful reproduction. Previous studies have shown that hatchery-origin Chinook salmon (Oncorhynchus tshawytscha) released from different acclimation sites return with varying degrees of fidelity to these areas. To investigate the possibility that homing fidelity is associated with aquatic habitat conditions, we quantified physical habitat throughout 165 km in the upper Yakima River basin (Washington, USA) and mapped redd and carcass locations from 2004 to 2008. Principal components analysis identified differences in substrate, cover, stream width, and gradient among reaches surrounding acclimation sites, and canonical correspondence analysis revealed that these differences in habitat characteristics were associated with spatial patterns of spawning (p < 0.01). These analyses indicated that female salmon may forego spawning near their acclimation area if the surrounding habitat is unsuitable. Evaluating the spatial context of acclimation areas in relation to surrounding habitat may provide essential information for effectively managing supplementation programs and prioritizing restoration actions.

Biological consequences of the coaster brook trout restoration stocking program in Lake Superior tributaries with Pictured Rocks National Lakeshore

USGS Publications Warehouse

Leonard, Jill B.K.; Stott, Wendylee; Loope, Delora M.; Kusnierz, Paul C.; Sreenivasan, Ashwin

2013-01-01

The coaster Brook Trout Salvelinus fontinalis is a Lake Superior ecotype representing intraspecific variation that has been impacted by habitat loss and overfishing. Hatchery strains of Brook Trout derived from populations in Lake Superior were stocked into streams within Pictured Rocks National Lakeshore, Michigan, as part of an effort to rehabilitate adfluvial coaster Brook Trout. Wild and hatchery Brook Trout from three streams (Mosquito River, Hurricane River, and Sevenmile Creek) were examined for movement behavior, size, physiology, and reproductive success. Behavior and size of the stocked fish were similar to those of wild fish, and less than 15% of the stocked, tagged Brook Trout emigrated from the river into which they were stocked. There was little evidence of successful reproduction by stocked Brook Trout. Similar to the results of other studies, our findings suggest that the stocking of nonlocal Brook Trout strains where a local population already exists results in limited natural reproduction and should be avoided, particularly if the mechanisms governing the ecotype of interest are poorly understood.

Emigration of Natural and Hatchery Chinook Salmon and Steelhead Smolts from the Imnaha River, Oregon, October 20, 1999 to June 15, 2000 : 2000 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cleary, Peter J.

2002-12-01

This report details the smolt performance of natural and hatchery chinook salmon and steelhead from the Imnaha River to the Snake River and Columbia River dams during migration year 2000. Flow conditions in the Imnaha River and Snake River were appreciably lower during May and June in 2000, compared to historic levels at gauging stations, but flow conditions in the Imnaha and Snake River were above average during April. Overall, water conditions for the entire Columbia River were characterized by the Fish Passage Center as below normal levels. Spill occurred continuously at Lower Granite Dam (LGR), Little Goose Dam (LGO),more » and Lower Monumental Dam (LMO) from April 5, April 10, and April 4, respectively, to June 20, and encompassed the periods of migration of Imnaha River juvenile chinook salmon and steelhead, with a few exceptions. Outflow in the tailraces of LGR, LGO, and LMO decreased in May and June while temperatures increased. Chinook salmon and steelhead were captured using rotary screw traps at river kilometer (rkm) 74 and 7 during the fall from October 20 to November 24, 1999, and during the spring period from February 26 to June 15, 2000, at rkm 7. Spring trapping information was reported weekly to the Fish Passage Center's Smolt Monitoring Program. A portion of these fish were tagged weekly with passive integrated transponder (PIT) tags and were detected migrating past interrogation sites at Snake River and Columbia River dams. Survival of PIT tagged fish was estimated with the Survival Using Proportional Hazards model (SURPH model). Estimated survival of fall tagged natural chinook (with {+-} 95% confidence intervals in parenthesis) from the upper Imnaha (rkm 74) to LGR was 29.6% ({+-} 2.8 ). Natural chinook salmon tagged in the fall in the lower Imnaha River at rkm 7, which over wintered in the Snake River, had an estimated survival of 36.8% ({+-} 2.9%) to LGR. Spring tagged natural chinook salmon from the lower site had an estimated survival of 84.8% ({+-} 2.6%) to LGR. The season wide survival of spring tagged natural chinook salmon smolts from release in the Imnaha River to McNary Dam (MCN) was 67.9% ({+-} 6.3%). Post release survival of hatchery chinook salmon smolts, from release at the Imnaha River acclimation facility to the lower Imnaha River trap, was estimated at 94.7% ({+-} 4.7%). Hatchery chinook salmon, PIT tagged and released at the lower Imnaha River trap, had an estimated survival of 75.0% ({+-} 4.2%) to LGR. Estimated survival of hatchery chinook salmon smolts from the Imnaha River to McNary Dam (MCN) was 54.1% ({+-} 9.7%). Natural steelhead smolts had an estimated survival of 84.4% ({+-} 2.7%) to LGR and a survival estimate of 49.9% ({+-}12.2%) from the lower Imnaha River trap to MCN. The estimated survival of hatchery steelhead smolts to LGR was 85.8 ({+-} 2.4) and the survival from release to MCN was 40.2% ({+-}12.5%).« less

Mass loading of selected major and trace elements in Lake Fork Creek near Leadville, Colorado, September-October 2001

USGS Publications Warehouse

Walton-Day, Katherine; Flynn, Jennifer L.; Kimball, Briant A.; Runkel, Robert L.

2005-01-01

A mass-loading study of Lake Fork Creek of the Arkansas River between Sugarloaf Dam and the mouth was completed in September-October 2001 to help ascertain the following: (1) variation of pH and aqueous constituent concentrations (calcium, sulfate, alkalinity, aluminum, cadmium, copper, iron, manganese, lead, and zinc) and their relation to toxicity standards along the study reach; (2) location and magnitude of sources of metal loading to Lake Fork Creek; (3) amount and locations of metal attenuation; (4) the effect of streamside wetlands on metal transport from contributing mine tunnels; and (5) the effect of organic-rich inflow from the Leadville National Fish Hatchery on water quality in Lake Fork Creek. The study was done in cooperation with the Bureau of Land Management, U.S. Department of Agriculture Forest Service, and U.S. Fish and Wildlife Service. Constituent concentrations and pH showed variable patterns over the study reach. Hardness-based acute and chronic toxicity standards were exceeded for some inflows and some constituents. However, stream concentrations did not exceed standards except for zinc starting in the upper parts of the study reach and extending to just downstream from the inflow from the Leadville National Fish Hatchery. Dilution from that inflow lowered stream zinc concentrations to less than acute and chronic toxicity standards. The uppermost 800 meters of the study reach that contained inflow from the Bartlett, Dinero, and Nelson mine tunnels and the Dinero wetland was the greatest source of loading for manganese and zinc. A middle section of the study reach that extended approximately 2 kilometers upstream from the National Fish Hatchery inflow to just downstream from that inflow was the largest source of aluminum, copper, iron, and lead loading. The loading was partially from the National Fish Hatchery inflow but also from unknown sources upstream from that inflow, possibly ground water. The largest sources for calcium and sulfate load to the stream were the parts of the study reach containing inflow from the tribu-taries Halfmoon Creek (calcium) and Willow Creek (sulfate). The Arkansas River and its tributaries upstream from Lake Fork Creek were the source of most of the calcium (70 percent), sulfate (82 percent), manganese (77 percent), lead (78 percent), and zinc (95 percent) loads in the Arkansas River downstream from the Lake Fork confluence. In contrast, Lake Fork Creek was the major source of aluminum (68 percent), copper (65 percent), and iron (87 percent) loads to the Arkansas River downstream from the confluence. Attenuation was not important for calcium, sulfate, or iron. However, other metals loads were reduced up to 81 percent over the study reach (aluminum, 25 percent; copper, 20 percent; manganese, 81 percent; lead, 30 percent; zinc, 72 percent). Metal attenuation in the stream occurred primarily in three locations (1) the irrigation diversion ditch; (2) the beaver pond complex extending from upstream from the Colorado Gulch inflow to just downstream from that inflow; and (3) the stream reach that included the inflow from Willow Creek. The most likely attenuation mechanism is precipitation of metal oxides and hydroxides (primarily manganese), and sorption or coprecipitation of trace elements with the precipitating phase. A mass-balance calculation indicated that the wetland between the Dinero Tunnel and Lake Fork Creek removed iron, had little effect on zinc mass load, and was a source for, or was releasing, aluminum and manganese. In contrast, the wetland that occurred between the Siwatch Tunnel and Lake Fork Creek removed aluminum, iron, manganese, and zinc from the tunnel drainage before it entered the creek. Inflow from the National Fish Hatchery increased dissolved organic carbon concentrations in Lake Fork Creek and slightly changed the composition of the dissolved organic carbon. However, dissolved organic carbon loads increased in the stream reach downs

Stocking of Offsite Waters for Hungry Horse Dam Mitigation Creston National Fish Hatchery, FY 2006 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hooley, Sharon

2009-03-20

A total of 350,000, M012 strain, westslope cutthroat trout (WCT) eggs were received from Montana Fish Wildlife & Parks (MFWP), Washoe Park State Fish Hatchery in June of 2005 to accomplish this fishery management objective. These eggs were incubated, hatched and reared entirely inside the hatchery nursery building using a protected well water supply. Fish grew according to schedule and survival was excellent. The hatchery achieved a 0.78 feed fed to pounds gained conversion ratio for this group of WCT. Not all of the progenies from this fish lot were used for Hungry Horse Dam Fishery Mitigation Implementation. Some weremore » used for other regional fishery management projects. Westslope cutthroat trout were reared using approved fish culture techniques as recommended in the USFWS Fish Hatchery Management Handbook and also utilizing a regimen adapted for hatchery specific site conditions. The fish health for these WCT was very good. Survival from first feeding fry stage to stocking was 79%. The hatchery had an annual fish health inspection performed by the USFWS Bozeman Fish Health Center in mid March of 2006. This inspection found all fish lots at Creston to be disease free. The Montana State Fish Health Board has placed the hatchery under a limited quarantine since May of 2005 due to an epizootic of Furunculosis. This classification has allowed the Creston NFH to stock disease free fish in locations approved by regional fish managers. The hatchery has been working with the State Fish Pathologist to remove the limited quarantine classification from the facility. Although fish health for all station fish lots remains disease free, MFWP has asserted it will not remove the limited quarantine until the new influent water treatment system, including the ultraviolet disinfection unit, is running full time, year round. The USFWS is working to secure the additional funding necessary to operate the treatment building year round. Distribution of the WCT took place from March through June. The stocking locations on the Flathead Reservation and State managed waters were identified by Confederated Salish and Kootenai Tribe (CSKT) and MFWP fishery biologists. Post release survival and angler success is monitored routinely by CSKT and MFWP fishery technicians. Stocking numbers and locations vary annually based on the results of biological monitoring, creel evaluations and adaptive management decisions. A total of 99,126 WCT were stocked during nine distribution trips in management approved waters (see Table 1). The average size of WCT at stocking was 3.91-inches. A total of 101,600, Arlee strain, rainbow trout (RBT) eggs were received from the Ennis National Fish Hatchery, Ennis, Montana, in December of 2005 and 35,000 Kamloops strain eggs were received from Murray Springs SFH, Eureka, Montana, in March of 2006 to accomplish this fishery management objective. The RBT were reared using approved fish culture techniques as recommended in the USFWS Fish Hatchery Management Handbook. There was no fish health related problems associated with this lot of fish. Survival from swim up fry stage to stocking was 93% for the Arlee's and 79% for the Kamloops. The hatchery achieved a 0.68 feed fed to pounds gained conversion ratio for the Arlee and 0.97 for the Kamloops RBT. The excellent feed conversion ratio can be attributed to refined feeding techniques and the use of an extruded high performance fry feed made with premium fish meal and marine fish oil. The Arlee strain of rainbow trout is requested for this fishery mitigation objective because the chosen stocking locations are terminal basin reservoirs or lakes, habitat conditions prevent natural spawning runs and returns to the creel are more favorable then for native westslope cutthroat trout. MFWP also requested a fall plant of Kamloops strain RBT and they will be evaluated for performance and future fall stockings in Echo Lake. Post release survival and angler success is monitored routinely by the Confederated Salish and Kootenai Tribe (CSKT) and Montana Fish Wildlife & Parks (MFWP) fishery technicians. Stocking numbers and locations vary annually based on the results of biological monitoring, creel evaluations and habitat conditions. The RBT were stocked in six distribution trips from June through September. The number of fish stocked and the receiving waters are identified below (see Table 2).« less

Hood River Production Master Plan.

DOE Office of Scientific and Technical Information (OSTI.GOV)

O'Toole, Patty

1991-07-01

The Northwest Power Planning Council's 1987 Columbia River Fish and Wildlife Program authorizes the development of artificial production facilities to raise chinook salmon and steelhead for enhancement in the Hood, Umatilla, Walla Walla, Grande Ronde and Imnaha rivers and elsewhere. On February 26, 1991 the Council agreed to disaggregate Hood River from the Northeast Oregon Hatchery Project, and instead, link the Hood River Master Plan (now the Hood River Production Plan) to the Pelton Ladder Project (Pelton Ladder Master Plan 1991).

First evidence of successful natural reproduction by planted lake trout in Lake Huron

USGS Publications Warehouse

Nester, Robert T.; Poe, Thomas P.

1984-01-01

Twenty-two lake trout (Salvelinus namaycush) swim-up fry, 24-27 mm long, were captured with emergent fry traps and a tow net in northwestern Lake Huron on a small nearshore reef off Alpena, Michigan, between May 10 and June 1, 1982. These catches represent the first evidence of successful production of swim-up fry by planted, hatchery-reared lake trout in Lake Huron since the lake trout rehabilitation program began in 1973.

Fisheries and aquatic resources--fish health

USGS Publications Warehouse

Panek, Frank

2008-01-01

Fish health research at Leetown had its origin in the 1930’s when the Leetown Fish Hatchery and Experiment Station was constructed. In 1978, the National Fish Health Research Laboratory, now a component of the Leetown Science Center, was established to solve emerging and known disease problems affecting fish and other aquatic organisms critical to species restoration programs. Center scientists develop methods for the isolation, detection, and identification of fish pathogens and for prevention and control of fish diseases.

Genetic conservation and paddlefish propagation

USGS Publications Warehouse

Sloss, Brian L.; Klumb, Robert A.; Heist, Edward J.

2009-01-01

The conservation of genetic diversity of our natural resources is overwhelmingly one of the central foci of 21st century management practices. Three recommendations related to the conservation of paddlefish Polyodon spathula genetic diversity are to (1) identify genetic diversity at both nuclear and mitochondrial DNA loci using a suggested list of 20 sampling locations, (2) use genetic diversity estimates to develop genetic management units, and (3) identify broodstock sources to minimize effects of supplemental stocking on the genetic integrity of native paddlefish populations. We review previous genetic work on paddlefish and described key principles and concepts associated with maintaining genetic diversity within and among paddlefish populations and also present a genetic case study of current paddlefish propagation at the U.S. Fish and Wildlife Service Gavins Point National Fish Hatchery. This study confirmed that three potential sources of broodfish were genetically indistinguishable at the loci examined, allowing the management agencies cooperating on this program flexibility in sampling gametes. This study also showed significant bias in the hatchery occurred in terms of male reproductive contribution, which resulted in a shift in the genetic diversity of progeny compared to the broodfish. This shift was shown to result from differential male contributions, partially attributed to the mode of egg fertilization. Genetic insights enable implementation of a paddlefish propagation program within an adaptive management strategy that conserves inherent genetic diversity while achieving demographic goals.

Effects of Large-Scale Releases on the Genetic Structure of Red Sea Bream (Pagrus major, Temminck et Schlegel) Populations in Japan.

PubMed

Blanco Gonzalez, Enrique; Aritaki, Masato; Knutsen, Halvor; Taniguchi, Nobuhiko

2015-01-01

Large-scale hatchery releases are carried out for many marine fish species worldwide; nevertheless, the long-term effects of this practice on the genetic structure of natural populations remains unclear. The lack of knowledge is especially evident when independent stock enhancement programs are conducted simultaneously on the same species at different geographical locations, as occurs with red sea bream (Pagrus major, Temminck et Schlegel) in Japan. In this study, we examined the putative effects of intensive offspring releases on the genetic structure of red sea bream populations along the Japanese archipelago by genotyping 848 fish at fifteen microsatellite loci. Our results suggests weak but consistent patterns of genetic divergence (F(ST) = 0.002, p < 0.001). Red sea bream in Japan appeared spatially structured with several patches of distinct allelic composition, which corresponded to areas receiving an important influx of fish of hatchery origin, either released intentionally or from unintentional escapees from aquaculture operations. In addition to impacts upon local populations inhabiting semi-enclosed embayments, large-scale releases (either intentionally or from unintentional escapes) appeared also to have perturbed genetic structure in open areas. Hence, results of the present study suggest that independent large-scale marine stock enhancement programs conducted simultaneously on one species at different geographical locations may compromise native genetic structure and lead to patchy patterns in population genetic structure.

Family size and effective population size in a hatchery stock of coho salmon (Oncorhynchus kisutch)

USGS Publications Warehouse

Simon, R.C.; McIntyre, J.D.; Hemmingsen, A.R.

1986-01-01

Means and variances of family size measured in five year-classes of wire-tagged coho salmon (Oncorhynchus kisutch) were linearly related. Population effective size was calculated by using estimated means and variances of family size in a 25-yr data set. Although numbers of age 3 adults returning to the hatchery appeared to be large enough to avoid inbreeding problems (the 25-yr mean exceeded 4500), the numbers actually contributing to the hatchery production may be too low. Several strategies are proposed to correct the problem perceived. Argument is given to support the contention that the problem of effective size is fairly general and is not confined to the present study population.

Effects of a dry hydrogen peroxide (DHP) air sanitation system used in an egg cooler on hatchability and chick quality

USDA-ARS?s Scientific Manuscript database

In commercial poultry production, hatcheries are a source of continual contamination. Sanitation in the hatchery is a constant process, where minimal beneficial results are seen if done correctly, but drastic negative impacts are felt when done improperly. A sanitation method that could continually ...

29 CFR 780.211 - Contract production of hatching eggs.

Code of Federal Regulations, 2014 CFR

2014-07-01

... 29 Labor 3 2014-07-01 2014-07-01 false Contract production of hatching eggs. 780.211 Section 780... Agriculture as It Relates to Specific Situations Hatchery Operations § 780.211 Contract production of hatching... the production of hatching eggs which the hatchery agrees to buy. Ordinarily, the farmer furnishes the...

29 CFR 780.211 - Contract production of hatching eggs.

Code of Federal Regulations, 2012 CFR

2012-07-01

... 29 Labor 3 2012-07-01 2012-07-01 false Contract production of hatching eggs. 780.211 Section 780... Agriculture as It Relates to Specific Situations Hatchery Operations § 780.211 Contract production of hatching... the production of hatching eggs which the hatchery agrees to buy. Ordinarily, the farmer furnishes the...

29 CFR 780.211 - Contract production of hatching eggs.

Code of Federal Regulations, 2013 CFR

2013-07-01

... 29 Labor 3 2013-07-01 2013-07-01 false Contract production of hatching eggs. 780.211 Section 780... Agriculture as It Relates to Specific Situations Hatchery Operations § 780.211 Contract production of hatching... the production of hatching eggs which the hatchery agrees to buy. Ordinarily, the farmer furnishes the...

Using copper sulfate on hybrid striped bass eggs to control fungus and increase survival

USDA-ARS?s Scientific Manuscript database

A major obstacle in fish hatcheries is the inevitable fungal growth on eggs. Copper sulfate (CuSO4) is commonly used for fungus control in channel catfish hatcheries that use troughs, but effectiveness on fish eggs hatched using different systems has only recently been investigated. Fish were spawn...

Use of copper sulfate to control Saprolegniasis at a commercial sunshine bass hatchery

USDA-ARS?s Scientific Manuscript database

An obstacle to sunshine bass (female white bass Morone chrysops × male striped bass M. saxatilis) larval production is fungal growth on eggs caused by the water-mold Saprolegnia spp. Copper sulfate (CuSO4) is commonly used for fungus control in troughs of catfish hatcheries, but the effectiveness o...

Accumulation by fish of contaminants released from dredged sediments

USGS Publications Warehouse

Seelye, James G.; Hesselberg, Robert J.; Mac, Michael J.

1982-01-01

Inasmuch as the process of dredging and disposing of dredged materials causes a resuspension of these materials and an increase in bioavailability of associated contaminants, we conducted a series of experiments to examine the potential accumulation by fish of contaminants from suspended sediments. In the first experiment we compared accumulation of contaminants by yellow perch of hatchery and lake origin and found that after 10 days of exposure to nonaerated sediments, fish of hatchery origin accumulated PCBs and Fe, while fish of lake origin accumulated As, Cr, Fe, and Na. Two additional exposures were conducted to evaluate the effects of aerating the sediments prior to measuring bioavailability of associated contaminants. Fish of hatchery origin exposed to nonaerated sediments for 10 days accumulated PCBs and Hg, while fish of hatchery origin exposed to aerated sediments for 10 days accumulated PCBs, DDE, Zn, Fe, Cs, and Se. These results demonstrated not only the potential for uptake of contaminants by fish as a result of dredging but also the potential utility of fish bioassays in evaluating proposed dredging operations.

Simulated hatchery system to assess bacteriophage efficacy against Vibrio harveyi.

PubMed

Raghu Patil, J; Desai, Srividya Narayanamurthy; Roy, Panchali; Durgaiah, Murali; Saravanan, R Sanjeev; Vipra, Aradhana

2014-12-02

Vibriosis caused by luminous Vibrio harveyi commonly contributes to poor survival in shrimp hatcheries and aquaculture ponds. Lytic bacteriophages pathogenic for V. harveyi are currently being investigated as an alternative to antibiotics to prevent vibriosis. Here, 8 bacteriophages were isolated from oysters and clams using V. harveyi strains as baiting hosts. Among these bacteriophages, 1 strain (VHP6b) identified as broadly pathogenic for 27 V. harveyi strains examined was further characterized by electron microscopy and genome sequence analysis. Phage VHP6b possessed a tail and morphology consistent with it being a member of the family Siphoviridae, and its genome and proteome were most closely related to the Vibrio phages SSP02 and MAR10. An integrase gene essential for lysogeny was not evident. The ability of bacteriophage VHP6b to protect shrimp postlarvae against vibriosis caused by V. harveyi strain VH6 was demonstrated in a model system designed to simulate typical hatchery conditions. Bacteriophage treatment improved survival of postlarvae by 40 to 60% under these conditions, so therapies based on this or other bacteriophages may be useful in shrimp hatcheries.

Comparing life history characteristics of Lake Michigan’s naturalized and stocked Chinook Salmon

USGS Publications Warehouse

Kerns, Janice A; Rogers, Mark W.; Bunnell, David B.; Claramunt, Randall M.; Collingsworth, Paris D.

2016-01-01

Lake Michigan supports popular fisheries for Chinook Salmon Oncorhynchus tshawytscha that have been sustained by stocking since the late 1960s. Natural recruitment of Chinook Salmon in Lake Michigan has increased in the past few decades and currently contributes more than 50% of Chinook Salmon recruits. We hypothesized that selective forces differ for naturalized populations born in the wild and hatchery populations, resulting in divergent life history characteristics with implications for Chinook Salmon population production and the Lake Michigan fishery. First, we conducted a historical analysis to determine if life history characteristics changed through time as the Chinook Salmon population became increasingly naturalized. Next, we conducted a 2-year field study of naturalized and hatchery stocked Chinook Salmon spawning populations to quantify differences in fecundity, egg size, timing of spawning, and size at maturity. In general, our results did not indicate significant life history divergence between naturalized and hatchery-stocked Chinook Salmon populations in Lake Michigan. Although historical changes in adult sex ratio were correlated with the proportion of naturalized individuals, changes in weight at maturity were better explained by density-dependent factors. The field study revealed no divergence in fecundity, timing of spawning, or size at maturity, and only small differences in egg size (hatchery > naturalized). For the near future, our results suggest that the limited life history differences observed between Chinook Salmon of naturalized and hatchery origin will not lead to large differences in characteristics important to the dynamics of the population or fishery.

Comparison of Staphylococcus aureus recovered from personnel in a poultry hatchery and in broiler parent farms with those isolated from skeletal disease in broilers.

PubMed

Rodgers, J D; McCullagh, J J; McNamee, P T; Smyth, J A; Ball, H J

1999-09-15

Personnel from one broiler hatchery, and workers on 18 separate broiler parent farms which supply the hatchery, were tested for hand and nasal carriage of Staphylococcus aureus. In both locations, nasal carriage of S. aureus was more common than hand carriage. A total of 63 S. aureus strains were characterised by biotyping, protein A analysis and pulsed field gel electrophoresis (PFGE) typing. Of these, 36 were recovered from broiler hatchery personnel, 14 from broiler parent farm personnel and 13 from cases of skeletal disease in commercial broilers. Biotyping and protein A analysis indicated that none of the strains recovered from hatchery personnel were of the poultry biotype, but that two strains recovered from the hands of two broiler parent farm personnel could be grouped together with 12/13 of strains recovered from skeletal disease in broilers, as poultry biotypes. PFGE-typing could not distinguish 9/13 strains recovered from skeletal disease in broilers and one of the strains from the broiler parent farm personnel from isolate 24 (I. 24), which is the predominant S. aureus strain type associated with clinical disease in N. Ireland broiler flocks. The present study found no evidence of nasal carriage of S. aureus strains of poultry biotype by humans. The finding of hand carriage by broiler parent farm personnel, suggests that handling by personnel may contribute to the dissemination of I. 24 or other S. aureus strains associated with skeletal disease in broilers.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Knudsen, Curtis M.; Schroder, Steven L.; Johnston, Mark V.

This report is intended to satisfy two concurrent needs: (1) provide a contract deliverable from Oncorh Consulting to the Washington Department of Fish and Wildlife (WDFW), with emphasis on identification of salient results of value to ongoing Yakima/Klickitat Fisheries Project (YKFP) planning and (2) summarize results of research that have broader scientific relevance. This is the fourth in a series of reports that address reproductive ecological research and monitoring of spring chinook populations in the Yakima River basin. This annual report summarizes data collected between April 1, 2004 and March 31, 2005 and includes analyses of historical baseline data, asmore » well. Supplementation success in the Yakima Klickitat Fishery Project's (YKFP) spring chinook (Oncorhynchus tshawytscha) program is defined as increasing natural production and harvest opportunities, while keeping adverse ecological interactions and genetic impacts within acceptable bounds (Busack et al. 1997). Within this context demographics, phenotypic traits, and reproductive ecology have significance because they directly affect natural productivity. In addition, significant changes in locally adapted traits due to hatchery influence, i.e. domestication, would likely be maladaptive resulting in reduced population productivity and fitness (Taylor 1991; Hard 1995). Thus, there is a need to study demographic and phenotypic traits in the YKFP in order to understand hatchery and wild population productivity, reproductive ecology, and the effects of domestication (Busack et al. 1997). Tracking trends in these traits over time is also a critical aspect of domestication monitoring (Busack et al. 2004) to determine whether trait changes have a genetic component and, if so, are they within acceptable limits. The first chapter of this report compares first generation hatchery and wild upper Yakima River spring chinook returns over a suite of life-history, phenotypic and demographic traits. The second chapter deals specifically with identification of putative populations of wild spring chinook in the Yakima River basin based on differences in quantitative and genetic traits. The third chapter is a progress report on gametic traits and progeny produced by upper Yakima River wild and hatchery origin fish spawned in 2004 including some comparisons with Little Naches River fish. In the fourth chapter, we present a progress report on comparisons naturally spawning wild and hatchery fish in the upper Yakima River and in an experimental spawning channel at CESRF in 2004. The chapters in this report are in various stages of development. Chapters One and Two will be submitted for peer reviewed publication. Chapters Three and Four should be considered preliminary and additional fieldwork and/or analysis are in progress related to these topics. Readers are cautioned that any preliminary conclusions are subject to future revision as more data and analytical results become available.« less

Research, monitoring, and evaluation of emerging issues and measures to recover the Snake River Fall Chinook Salmon ESU, 1/1/2016 - 12/31/2016

USGS Publications Warehouse

Connor, William P.; Mullins, Frank L.; Tiffan, Kenneth F.; Plumb, John M.; Perry, Russell W.; Erhardt, John M.; Hemingway, Rulon J.; Bickford, Brad; Rhodes, Tobyn N.

2017-01-01

The portion of the Snake River fall Chinook Salmon Oncorhynchus tshawytscha ESU that spawns upstream of Lower Granite Dam transitioned from low to high abundance during 1992–2016 in association with U.S. Endangered Species Act recovery efforts and other federally mandated actions. This annual report focuses on (1) numeric and habitat use responses by natural- and hatchery-origin spawners, (2) phenotypic and numeric responses by natural-origin juveniles, and (3) predator responses in the Snake River upper and lower reaches as abundance of adult and juvenile fall Chinook Salmon increased. Spawners have located and used most of the available spawning habitat and that habitat is gradually approaching redd capacity. Timing of spawning and fry emergence has been relatively stable; whereas the timing of parr dispersal from riverine rearing habitat into Lower Granite Reservoir has become earlier as apparent abundance of juveniles has increased. Growth rate (g/d) and dispersal size of parr also declined as apparent abundance of juveniles increased. Passage timing of smolts from the two Snake River reaches has become earlier and downstream movement rate faster as estimated abundance of fall Chinook Salmon smolts in Lower Granite Reservoir has increased. In 2016, we described estimated the consumption rate and loss of subyearlings by Smallmouth Bass before, during, and after four hatchery releases. Before releases, Smallmouth Bass consumption rates of subyearling was low (0–0.36 fish/bass/d), but the day after the releases consumption rates reached as high as 1.6 fish/bass/d. Bass consumption in the upper portion of Hells Canyon was high for about 1–2 d before returning to pre-release levels, but in the lower river consumption rates were reduced but took longer to return to pre-release levels. We estimated that most of the subyearlings consumed by bass were of hatchery origin. Smallmouth Bass predation on subyearlings is intense following a hatchery release, but the predation pressure is relatively short-lived as subyearlings quickly disperse downstream. This information will allow us to better estimate subyearling loss to predation from our past efforts at time intervals less than 2 weeks. These findings coupled with stock-recruitment analyses presented in this report provide evidence for density-dependence in the Snake River reaches and in Lower Granite Reservoir that was influenced by the expansion of the recovery program. The long-term goal is to use the information covered here in a comprehensive modeling effort to conduct action effectiveness and uncertainty research and to inform Fish Population, Hydrosystem, Harvest, Hatchery, and Predation and Invasive Species Management RM&E.

Relying on fin erosion to identify hatchery-reared brown trout in a Tennessee river

USGS Publications Warehouse

Meerbeek, Jonathan R.; Bettoli, Phillip William

2012-01-01

Hatchery-induced fin erosion can be used to identify recently stocked catchable-size brown trout Salmo trutta during annual surveys to qualitatively estimate contributions to a fishery. However, little is known about the longevity of this mark and its effectiveness as a short-term (≤ 1 year) mass-marking technique. We evaluated hatchery-induced pectoral fin erosion as a mass-marking technique for short-term stocking evaluations by stocking microtagged brown trout in a tailwater and repeatedly sampling those fish to observe and measure their pectoral fins. At Dale Hollow National Fish Hatchery, 99.1% (228 of 230) of microtagged brown trout in outdoor concrete raceways had eroded pectoral fins 1 d prior to stocking. Between 34 and 68 microtagged and 26-35 wild brown trout were collected during eight subsequent electrofishing samples. In a blind test based on visual examination of pectoral fins at up to 322 d poststocking, one observer correctly identified 91.7% to 100.0% (mean of 96.9%) of microtagged brown trout prior to checking for microtags. In the laboratory, pectoral fin length and width measurements were recorded to statistically compare the fin measurements of wild and microtagged hatchery brown trout. With only one exception, all pectoral fin measurements on each date averaged significantly larger for wild trout than for microtagged brown trout. Based on the number of pectoral fin measurements falling below 95% prediction intervals, 93.7% (148 of 158) of microtagged trout were correctly identified as hatchery fish based on regression models up to 160 d poststocking. Only 72.2% (70 of 97) of microtagged trout were identified correctly after 160 d based on pectoral fin measurements and the regression models. We concluded that visual examination of pectoral fin erosion was a very effective way to identify stocked brown trout for up to 322 d poststocking.

Two alternative juvenile life history types for fall Chinook salmon in the Snake River basin

USGS Publications Warehouse

Connor, W.P.; Sneva, J.G.; Tiffan, K.F.; Steinhorst, R.K.; Ross, D.

2005-01-01

Fall Chinook salmon Oncorhynchus tshawytscha in the Snake River basin were listed under the Endangered Species Act in 1992. At the time of listing, it was assumed that fall Chinook salmon juveniles in the Snake River basin adhered strictly to an ocean-type life history characterized by saltwater entry at age 0 and first-year wintering in the ocean. Research showed, however, that some fall Chinook salmon juveniles in the Snake River basin spent their first winter in a reservoir and resumed seaward movement the following spring at age 1 (hereafter, reservoir-type juveniles). We collected wild and hatchery ocean-type fall Chinook salmon juveniles in 1997 and wild and hatchery reservoir-type juveniles in 1998 to assess the condition of the reservoir-type juveniles at the onset of seaward movement. The ocean-type juveniles averaged 112-139 mm fork length, and the reservoir-type juveniles averaged 222-224 mm fork length. The large size of the reservoir-type juveniles suggested a high potential for survival to salt water and subsequent return to freshwater. Scale pattern analyses of the fall Chinook salmon spawners we collected during 1998-2003 supported this point. Of the spawners sampled, an overall average of 41% of the wild fish and 51% of the hatchery fish had been reservoir-type juveniles. Males that had been reservoir-type juveniles often returned as small "minijacks" (wild, 16% of total; hatchery, 40% of total), but 84% of the wild males, 60% of the hatchery males, and 100% of the wild and hatchery females that had been reservoir-type juveniles returned at ages and fork lengths commonly observed in populations of Chinook salmon. We conclude that fall Chinook salmon in the Snake River basin exhibit two alternative juvenile life histories, namely ocean-type and reservoir-type. ?? Copyright by the American Fisheries Society 2005.

Effect of developmental stage of unfed fry on survival and growth of steelhead released in a stream and hatchery ponds (Study sites: Dworshak Hatchery and North Fork Palouse River; Stock: Dworshak hatchery; Year class: 1996): Chapter 6

USGS Publications Warehouse

Rubin, Stephen P.; Reisenbichler, Reginald R.; Wetzel, Lisa A.; Stenberg, Karl D.; Rubin, Stephen P.; Reisenbichler, Reginald R.; Wetzel, Lisa A.; Hayes, Michael C.

2012-01-01

We tested whether differences in developmental stage of unfed fry at release affected subsequent survival and growth of steelhead Oncorhynchus mykiss in a stream and hatchery ponds. Differences in development were created by artificially spawning hatchery steelhead from the Clearwater River, Idaho, and incubating their progeny at three different temperatures (means=10.9, 11.3, and 11.7°C). Time between fertilization and maximum alevin wet weight (MAWW) was predicted from incubation temperature using a model. MAWW is equivalent to the button - up fry stage of development. Developmental stages at release were “underdeveloped” (97.7% of model - predicted time to MAWW, mean weight=0.177 g, proportion yolk=0.087), “intermediate” (102.5%, 0.179 g, 0.044), and “overdeveloped” (107.9%, 0.156 g, 0.030). Neither survival nor growth in the hatchery to near the end of the standard one year rearing period differed among groups. In the stream, frequency of overdeveloped fish relative to the other two groups decreased fro m release in May to September, probably indicating lower survival for the overdeveloped fish during that interval since emigration of sub - yearlings is typically negligible. Length in September was less for overdeveloped than for intermediate fish and was in between for underdeveloped fish, suggesting that growth between May and September was less for overdeveloped fish than for intermediate fish. Although changes in relative frequency and size occurred among fry development groups from September to one ye ar later, those changes may have reflected differences in emigration rate during the interval rather than differential survival or growth. Our results show a cost to survival and growth in a stream, but not in a hatchery, from overdevelopment characterize d by loss of weight and yolk reserves relative to fry closer to MAWW at release. We didn’t find any cost from underdevelopment; however, our underdeveloped fry were closer to MAWW than the overdeveloped fry, and they may have been no farther from MAWW than the intermediate fry based on percentage of model - predicted time to MAWW at release. 

Yakima/Klickitat Fisheries Project Genetic Studies; Yakima/Klickitat Fisheries Project Monitoring and Evaluation Report 1 of 7, 2003-2004 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Busack, Craig A.; Frye, Alice; Kassler, Todd

2004-05-01

Genetic work for 2003, as in previous years, was quite diverse. In chapter 1 we report on the use of DNA microsatellite markers to sex spring chinook collected at Roza. We have learned through comparison of sex determinations at Roza and then at CESRF that sexing green fish on the basis of morphology is somewhat inaccurate, and accurate sexing of fish at Roza is needed to estimate sex ratios of fish on the spawning grounds. Using DNA microsatellite markers, sexing accuracy was high, but not perfect. In chapter 2 we report on new genetic risk concepts currently being developed andmore » their implications for the YKFP spring chinook program. The impact on domestication of gene flow between the natural and hatchery spawning components is now much better understood. It is now possible to compare the risk of different hatchery programs much more quantitatively in the past. Thus, we can now make good predictions of how much less domesticating the Yakima spring chinook supplementation effort is than other programs. In chapter 3 we present the initial results of morphological comparisons of adult (1) hatchery-origin Upper Yakima spring chinook, (2) natural-origin U. Yakima spring chinook, and (3) Naches spring chinook. Canonical variate analysis allowed both sexes of the three groups to be classified correctly with over accuracy. The differences are subtle, but hatchery-origin fish appear to be someone thinner than natural-origin fish. This is consistent with observations of hatchery vs wild morphology in coho. In chapter 4 we describe the ongoing work to refine the Domestication Research/Monitoring Plan. Work for last year included analysis of the impact of HC line precocious males spawning in the wild, development of a misting incubation system for off-site incubation of Naches eggs, and refinement of some aspects of experimental design. The misting incubation system has broad applicability outside the project. The most recent version of the domestication monitoring plan is included as an appendix. In chapter 5 we present a final report on computer simulations of factorial mating designs. Using three different schemes for combining breeding values of fish, we found that full factorial mating offers a substantial increase in effective size over single-pair mating. Although full factorial mating may be too difficult logistically, but a significant proportion of the full factorial mating advantage can be obtained by using 2 x 2 partial factorials. We have developed a method that allows us to determine the relative effective size advantage of mixed partial factorial designs. In chapter 6 we report on an analysis of stock origin of smolts collected at Chandler. The 702 Chinook salmon smolts collected at the Chandler trap in 2003 were screened at 12 microsatellite DNA loci. A new Yakima basin baseline, consisting of spring chinook from the upper Yakima, Naches, and American River populations and fall chinook from the Marion Drain and lower Yakima populations, was created for these same 12 loci. DNA template problems with the tissue collections from the Naches, and American River populations prompted the omission of four loci prior to analysis. The results indicated: 80% Naches spring, 13% American River spring, 7% upper Yakima spring, and less than 1% for the two fall populations combined. The estimated stock proportions in the 2003 Chandler collection differed substantially from those for the 2002 collection. The temporal pattern of sampling in both Chandler smolt collections was not proportional to the observed outmigration in each year, suggesting that both of these estimates should be regarded with caution. Strengthening of the baseline data set will be a high priority for future work with Chandler smolts.« less

Assessment of juvenile coho salmon movement and behavior in relation to rehabilitation efforts in the Trinity River, California, using PIT tags and radiotelemetry

USGS Publications Warehouse

Chase, Robert; Hemphill, Nina; Beeman, John; Juhnke, Steve; Hannon, John; Jenkins, Amy M.

2013-01-01

Coho salmon (Oncorhynchus kisutch) of the Southern Oregon/Northern California Coast (SONCC) Evolutionarily Significant Unit (ESU) is federally listed as a threatened species. The Trinity River Restoration Program (TRRP) is rehabilitating the Trinity River to restore coho salmon (coho) and other salmonid populations. In order to evaluate the program’s actions, several studies of movements and behavior of coho in the Trinity River were conducted from 2006 to 2009, including snorkel surveys and mark-recapture techniques based on Passive Integrated Transponder (PIT) tags, elastomer tags, and radio transmitters. Catch, recapture, and condition of natural sub-yearlings, along with site fidelity and emigration of hatchery-reared yearlings in rehabilitated and reference habitats, were studied. Location was important because coho were absent from the lower controlled and rehabilitated sites most of the time. However, rehabilitation did not have a significant effect on natural coho salmon at the site level. Apparent survival of radio-tagged, hatchery-reared yearling coho released downstream from Lewiston Dam was much lower in the first 10 km downstream from the release site than in other areas between Lewiston Dam and the Klamath River estuary. Estimated survival of yearling hatchery coho salmon per 100 km down to Blake’s Riffle was estimated at 64 % over the distance of the 239 km study area. Migration primarily occurred at night in the upper Trinity River; however, as yearlings moved through the lower Trinity River towards the Klamath River, estuary nocturnal migration became less. Apparent survival was generally lowest in areas upstream from the North Fork of the Trinity River.

Annual Coded Wire Tag Program; Oregon Stock Assessment, 2000 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lewis, Mark; Mallette, Christine; Murray, William

2002-03-01

This annual report is in fulfillment of contract obligations with Bonneville Power Administration which is the funding source for the Oregon Department of Fish and Wildlife's Annual Stock Assessment - Coded Wire Tag Program (ODFW) Project. Tule stock fall chinook were caught primarily in British Columbia and Washington ocean, and Columbia Basin fisheries. Up-river bright stock fall chinook contributed primarily to Alaska and British Columbia ocean commercial, Columbia Basin gillnet and freshwater sport fisheries. Contribution of Rogue stock fall chinook released in the lower Columbia River occurred primarily in Oregon ocean commercial, Columbia Basin gillnet and freshwater sport fisheries. Willamettemore » stock spring chinook contributed primarily to Alaska and British Columbia ocean, and Columbia Basin sport fisheries. Willamette stock spring chinook released by CEDC contributed to similar ocean fisheries, but had much higher catch in Columbia Basin gillnet fisheries than the same stocks released in the Willamette Basin. Up-river stocks of spring chinook contributed almost exclusively to Columbia Basin fisheries. The up-river stocks of Columbia River summer steelhead contributed almost exclusively to the Columbia Basin gillnet and freshwater sport fisheries. Coho ocean fisheries from Washington to California were closed or very limited from 1994 through 1999 (1991 through 1996 broods). This has resulted in a lower percent of catch in Washington, Oregon and California ocean fisheries, and a higher percent of catch in Alaska and British Columbia ocean and Columbia Basin freshwater fisheries. Coho stocks released by ODFW below Bonneville Dam were caught mainly in Oregon, Washington, and British Columbia ocean, Columbia Gillnet and freshwater sport fisheries. Coho stocks released in the Klaskanine River and Youngs Bay area had similar ocean catch distributions, but a much higher percent catch in gillnet fisheries than the other coho releases. Ocean catch distribution of coho stocks released above Bonneville Dam was similar to the other coho groups. However, they had a higher percent catch in gillnet fisheries above Bonneville Dam than coho released below the dam. Survival rates of salmon and steelhead are influenced, not only by factors in the hatchery (disease, density, diet, size and time of release) but also by environmental factors in the river and ocean. These environmental factors are influenced by large scale oceanic and weather patterns such as El Nino. Changes in rearing conditions in the hatchery do impact survival, however, these can be offset by impacts caused by environmental factors. Coho salmon released in the Columbia River generally experience better survival rates when released later in the spring. However, for the 1990 brood year June releases of Columbia River coho had much lower survival than May releases, for all ODFW hatcheries. In general survival of ODFW Columbia River hatchery coho has declined to low levels in recent years. Preliminary results from the evaluation of Visual Implant Elastomer (VIE) tags showed tagging rate and pre-release tag retention improved from the first to second years of tagging. Tagging rate remained identical from 1999 to 2000 while pre-release tag retention dropped to 95%. Returning jack and adult salmon were sampled for CWT and VIE tags in the fall of 2000. Of 606 adults recovered at Sandy Fish Hatchery in 2000, only 1 or 0.2%, retained their VIE tag. Of 36 jacks recovered in 2000, 13 or 36.1% retained their VIE tag.« less

INDIVIDUAL TISSUE TO TOTAL BODY-WEIGHT RELATIONSHIPS AND TOTAL, POLAR, AND NON-POLAR LIPIDS IN TISSUES OF HATCHERY LAKE TROUT

EPA Science Inventory

Tissue body weight relaltionships, total lipid, and major lipid subclasses were measured in 20 adult hatchery lake trout to obtain a more in-depth understanding of the major lipid compartments of the "lean" lake trout for use in modeling the disposition of xenobiotics. It is sug...

Rapid discovery of SNPs differentiating hatchery steelhead trout from ESA-listed wild steelhead trout using a 57K SNP array

USDA-ARS?s Scientific Manuscript database

Natural-origin steelhead in the Pacific Northwest USA are threatened by a number of factors including habitat destruction, disease, decline in marine survival and a potential erosion of genetic viability due to introgression from hatchery strains. The major goal of this study was to use a recently ...

Egg saprolegniasis in a commercial sunshine bass hatchery: Control regime developed using copper sulfate

USDA-ARS?s Scientific Manuscript database

An obstacle to sunshine bass (female white bass Morone chrysops × male striped bass M. saxatilis) larval production is fungal growth on eggs caused by the water-mold Saprolegnia spp. Copper sulfate (CuSO4) is commonly used for fungus control in troughs of catfish hatcheries, but the effectiveness o...

Use of recirculating aquaculture systems to increase production and quality of hatchery reared juvenile red drum for marine stock enhancement

USDA-ARS?s Scientific Manuscript database

The abundance of economically important marine sportfish has declined in Florida’s waters due to factors such as over-fishing and critical habitat disturbance. Hatchery production and enhancement stocking has traditionally been used in freshwater systems as a means of mitigating for effects such as ...

Techno-Arrogance and Halfway Technologies: Salmon Hatcheries on the Pacific Coast of North America.

ERIC Educational Resources Information Center

Meffe, Gary K.

1993-01-01

Discusses an attempt to recover Pacific salmonid fisheries with hatcheries as an example of a human attitude toward nature that places technological mastery over nature at the forefront of our approach to many environmental problems. Points out how this approach addresses the symptoms but not the causes of the salmon population decline. Suggests…

Pen rearing and imprinting of fall Chinook salmon. Annual report 1989

USGS Publications Warehouse

Beeman, J.W.; Novotny, J.F.

1990-01-01

The goal of this project is to compare net-pen rearing methods to traditional hatchery methods of rearing upriver bright fall chinook salmon (Oncorhvnchus tshawvtscha). Fish were reared at several densities in net pens at three Columbia River backwater sites during 1984-1987, and in a barrier net at one site during 1984-1986; methods included both fed and unfed treatments. The purpose of this report is to summarize the results obtained from the unfed treatments and the current return of adults from all fed treatments and the barrier net. Zooplankton were the primary food item of unfed fish. Fish reared in net pens utilized insects colonizing the nets as an additional food source, whereas those reared in the barrier net did not. Growth and production of fish reared in the unfed treatments were low. Instantaneous growth rates of unfed fish were much lower than those of the fed treatments and hatchery controls except when zooplankton densities were high and chironomid larvae were important in the diet of unfed fish reared in pens. Only fish in the barrier net treatment resulted in consistent net gains in growth and production over the rearing periods. Adult returns of fish from all fed and unfed treatments are lower than those of control fish reared at the hatchery. Returns appear to be inversely related to rearing density. Even though adult returns are lower than those of traditional hatchery methods, a cost-benefit analysis, as return data becomes more complete, may prove these methods to be an economical means of expanding current hatchery production, particularly if "thinning" releases were used.

Hatchery Contributions to Emerging Naturally Produced Lake Huron Lake Trout.

PubMed

Scribner, Kim; Tsehaye, Iyob; Brenden, Travis; Stott, Wendylee; Kanefsky, Jeannette; Bence, James

2018-06-19

Recent assessments indicate the emergence of naturally produced lake trout (Salvelinus namaycush) recruitment throughout Lake Huron in the North American Laurentian Great Lakes (>50% of fish <7 yrs). Because naturally produced fish derived from different stocked hatchery strains are unmarked, managers cannot distinguish strains contributing to natural recruitment. We used 15 microsatellite loci to identify strains of naturally produced lake trout (N=1567) collected in assessment fisheries during early (2002-2004) and late (2009-2012) sampling periods. Individuals from 13 American and Canadian hatchery strains (N=1143) were genotyped to develop standardized baseline information. Strain contributions were estimated using a Bayesian inferential approach. Deviance information criteria was used to compare models evaluating strain contributions at different spatial and temporal scales. The best performing models were the most complex models, suggesting that hatchery strain contributions to naturally produced lake trout varied spatially among management districts and temporally between time periods. Contributions of Seneca strain lake trout were consistently high across most management districts, with contributions increasing from early to late time periods (estimates ranged from 52-94% for the late period across eight of nine districts). Strain contributions deviated from expectations based on historical stocking levels, indicating strains differed with respect to survival, reproductive success, and/or dispersal. Knowledge of recruitment levels of strains stocked in different management districts, and how strain-specific recruitment varies temporally, spatially, and as a function of local or regional stocking is important to prioritize strains for future stocking and management of the transition process from primarily hatchery to naturally produced stocks.

Predation on Chinook Salmon parr by hatchery salmonids and Fallfish in the Salmon River, New York

USGS Publications Warehouse

Johnson, James H.; Nack, Christopher C.; Chalupnicki, Marc; Abbett, Ross; McKenna, James E.

2016-01-01

Naturally reproduced Chinook Salmon Oncorhynchus tshawytscha contribute substantially to the fishery in Lake Ontario. The Salmon River, a Lake Ontario tributary in New York, produces the largest numbers of naturally spawned Chinook Salmon, with parr abundance in the river often exceeding 10 million. In the spring of each year, large numbers of hatchery salmonid yearlings—potential predators of Chinook Salmon parr—are released into the Salmon River by the New York State Department of Environmental Conservation. We sought to examine predation on Chinook Salmon parr in the Salmon River during May and June prior to out-migration. Over the 4 years examined (2009–2012), annual consumption of Chinook Salmon parr by hatchery-released yearling steelhead O. mykiss and Coho Salmon O. kisutch ranged from 1.5 to 3.3 million and from 0.4 to 2.1 million, respectively. In 2009, Fallfish Semotilus corporalis were estimated to consume 2.9 million Chinook Salmon parr. Predation was higher in May, when the average TL of Chinook Salmon parr was 44.5 mm, than in June. Fallfish were also important predators of naturally reproduced steelhead subyearlings, consuming an estimated 800,000 steelhead in 2009. Hatchery-released yearling salmonids consumed 13.8–15.3% of the Chinook Salmon parr that were estimated to be present in the Salmon River during 2010–2012. Earlier releases of hatchery salmonid yearlings could reduce the riverine consumption of Chinook Salmon parr by facilitating the out-migration of yearlings prior to Chinook Salmon emergence.

Evaluation of partial water reuse systems used for Atlantic salmon smolt production at the White River National Fish Hatchery

USDA-ARS?s Scientific Manuscript database

Eight of the existing 9.1 m (30 ft) diameter circular culture tanks at the White River National Fish Hatchery in Bethel, Vermont, were retrofitted and plumbed into two 8,000 L/min partial water reuse systems to help meet the region's need for Atlantic salmon (Salmo salar) smolt production. The part...

Some problems of private trout hatchery operators

USGS Publications Warehouse

Rucker, Robert R.

1957-01-01

Disease, nutritional, and environmental problems in commercial production of trout are discussed, including mortality and age of spawners, copepod and gyrodactylid infections, suitable water temperatures, diseases (especially red mouth and back peel) and inspection of fish. It is concluded that experiences with hatchery procedures have varied greatly and often the commercial trout producer must adjust methods to fit his particular needs and conditions.

Treat - think - and be wary, for tomorrow they may die

USGS Publications Warehouse

Fish, F.F.

1938-01-01

For some very strange reason it is easy to minimize the villian's role, played by disease-producing organisms, in the theater of modern fish culture. Much concern is felt over the food bills footed each month by the hatcheries, but very little is thought about the dead fish which are picked from the hatchery troughs during the same period.

Discrimination among populations of sockeye salmon fry with Fourier analysis of otolith banding patterns formed during incubation

USGS Publications Warehouse

Finn, James E.; Burger, Carl V.; Holland-Bartels, Leslie E.

1997-01-01

We used otolith banding patterns formed during incubation to discriminate among hatchery- and wild-incubated fry of sockeye salmon Oncorhynchus nerka from Tustumena Lake, Alaska. Fourier analysis of otolith luminance profiles was used to describe banding patterns: the amplitudes of individual Fourier harmonics were discriminant variables. Correct classification of otoliths to either hatchery or wild origin was 83.1% (cross-validation) and 72.7% (test data) with the use of quadratic discriminant function analysts on 10 Fourier amplitudes. Overall classification rates among the six test groups (one hatchery and five wild groups) were 46.5% (cross-validation) and 39.3% (test data) with the use of linear discriminant function analysis on 16 Fourier amplitudes. Although classification rates for wild-incubated fry from any one site never exceeded 67% (cross-validation) or 60% (test data), location-specific information was evident for all groups because the probability of classifying an individual to its true incubation location was significantly greater than chance. Results indicate phenotypic differences in otolith microstructure among incubation sites separated by less than 10 km. Analysis of otolith luminance profiles is a potentially useful technique for discriminating among and between various populations of hatchery and wild fish.

Comparing the Reproductive Success of Yakima River Hatchery- and Wild-Origin Spring Chinook; Yakima/Klickitat Fisheries Project Monitoring and Evaluation, 2005-2006 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schroder, S.L.; Pearsons, T.N.; Knudsen, C.M.

Reproductive success in wild- and first generation hatchery-origin spring Chinook males was examined by allowing the fish to compete for spawning opportunities in two sections of an observation stream. Behavioral observations were used to characterize the frequency of aggression and courting activities. Microsatellite DNA from each male and fry collected from the observation stream were used in pedigree analyses to estimate reproductive success. The coefficient of variation in male reproductive success equaled 116 and 86% in the two populations. No differences were detected in reproductive success due to hatchery or wild origin. Nor were any behavioral differences found between hatcherymore » and wild males. Although statistical power was low due to intrinsic variation a great deal of overlap existed in the reproductive success values of hatchery and wild males. Significant disparities existed among the males on their ability to produce offspring. Males achieving high reproductive success mated with numerous females, were socially dominant, aggressive, and tended to stay in localized areas, courting and spawning with females that were adjacent to one another.« less

Comparing the Reproductive Success of Yakima River Hatchery- and Wild-Origin Spring Chinook; Yakima/Klickitat Fisheries Project Monitoring and Evaluation, 2001-2002 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schroder, Steven L.; Knudsen, Curtis M.; Watson, Bruce D.

In 2001 hatchery- and wild-origin spring chinook were placed into an observation stream located at the Cle Elum Supplementation Research Facility to compare their reproductive success. Two groups containing both wild- and hatchery fish of both sexes were brought into the stream and allowed to spawn. Their longevity, spawning participation, and reproductive success were assessed. In addition, wild- and hatchery-origin precocious males were also introduced into one of the sections and allowed to spawn. We found that hatchery and wild males generally lived longer than females. In one group hatchery and wild females lived for similar periods of time whilemore » in the other wild females lived longer than hatchery fish. Wild females were also more successful at burying their eggs and the eggs they buried had higher survival rates. This result occurred in both groups of fish. Spawning participation in males was estimated by using two statistics referred to as percent gonad depletion (PGD) and percent testes retention (PRT). Both of these measures assumed that loss of testes weight in males would reflect their spawning participation and therefore could be used to estimate reproductive success. Hatchery and wild males had similar PGD and PRT values. One of these measures, PRT, was negatively associated with male reproductive success, confirming the idea that reduction in testes weight can be used as a surrogate measure of a male's ability to produce offspring Fry from the observation stream were collected throughout the emergence period that ran from January through May. Proportionate sub-samples of these fish were removed and microsatellite DNA was extracted from them. Pedigree analyses were performed to ascertain which adult fish had produced them. These analyses disclosed that wild males were more successful at producing progeny in one of the groups. No difference occurred in the other group. Precocial males and jacks fathered fewer progeny than did fish maturing at ages 4 and 5. In addition, male reproductive success was more than twice as variable as that seen in females. Some males apparently never spawned and others produced more than 7,000 offspring an amount that was more than double the quantity generated by the most successful female. Behavioral observations showed that a number of factors besides male origin influenced their reproductive success. One was relative body size; larger males tended to dominate smaller opponents and therefore had greater access to females. However, male dominance was not always related to relative size. The ability to attack and chase opponents was, however, positively related to reproductive success. We also discovered that the reproductive status of females and the social status of males were often reflected by their nuptial coloration. Territorial females typically had a single broad purple black stripe, light green or brown backs and white or gray ventral surfaces. Dominate males on the other hand, were generally a uniform dark brown or black color. The percentage of time that a male possessed a dark color pattern was positively linked to his reproductive success, as was the percentage of time he was observed courting or defending a female. The number of times a male was chased or attacked by a female also affected his reproductive success, in this situation the greater the frequency of such attacks the lower the reproductive success of the male. The pedigree analyses also disclosed that both hatchery and wild precocious males were able to fertilize eggs and produce offspring under natural spawning conditions. In conclusion we found differences in the reproductive competency of hatchery- and wild origin spring chinook. Wild females were better at depositing their eggs and having those eggs produce fry. In one study group wild males were more successful at producing offspring than hatchery males. Additional replications of such evaluations are being carried out to determine if the differences seen can be replicated. A repeat of the work done in 2001, for example, was performed in 2002 and additional studies will take place this coming year.« less

Erosion of interspecific reproductive barriers resulting from hatchery supplementation of rainbow trout sympatric with cutthroat trout.

PubMed

Docker, Margaret F; Dale, Angie; Heath, Daniel D

2003-12-01

The frequency of hybridization between cutthroat (Onchorhynchus clarki clarki) and rainbow (O. mykiss irideus) trout from coastal habitats in British Columbia, Canada, was examined in seven populations where the two species are sympatric with no history of rainbow trout stocking and compared with areas where native rainbow trout populations have been supplemented with hatchery fish (three populations). Four nuclear markers were used to identify each species and interspecific hybrids and one mitochondrial marker showed the direction of gene exchange between species. The frequency of hybrids was significantly higher (Fisher exact test, P < 0.001) in river systems where hatchery rainbow trout have been introduced (50.6% hybrids) than in populations where the two species naturally co-occur without supplementation (9.9% hybrids).

Monitoring and Evaluation of Yearling Fall Chinook Salmon (Oncorhynchus tshawytscha) Released from Acclimation Facilities Upstream of Lower Granite Dam; 2001 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rocklage, Stephen J.; Kellar, Dale S.

2005-07-01

The Nez Perce Tribe, in cooperation with the U.S. Fish and Wildlife Service and Washington Department of Fish and Wildlife, conducted monitoring and evaluation studies on Lyons Ferry Hatchery reared yearling fall Chinook salmon Oncorhynchus tshawytscha that were acclimated and released at three Fall Chinook Acclimation Project sites upstream of Lower Granite Dam along with yearlings released on-station from Lyons Ferry Hatchery in 2001. This was the sixth year of a long-term project to supplement natural spawning populations of Snake River stock fall Chinook salmon upstream of Lower Granite Dam. The 318,932 yearlings released from the Fall Chinook Acclimation Projectmore » facilities were short of the 450,000 fish quota. We use Passive Integrated Transponder (PIT) tag technology to monitor the primary performance measures of survival to mainstem dams and migration timing. We also monitor size, condition and tag/mark retention at release. We released 7,503 PIT tagged yearlings from Pittsburg Landing, 7,499 from Big Canyon and 2,518 from Captain John Rapids. The Washington Department of Fish and Wildlife released 991 PIT tagged yearlings from Lyons Ferry Hatchery. Fish health sampling indicated that, overall, bacterial kidney disease levels could be considered relatively low. Compared to prior years, Quantitative Health Assessment Indices were relatively low at Big Canyon and Captain John Rapids and about average at Pittsburg Landing and Lyons Ferry Hatchery. Mean fork lengths (95% confidence interval) of the PIT tagged groups ranged from 155.4 mm (154.7-156.1 mm) at Captain John Rapids to 171.6 mm (170.7-172.5 mm) at Lyons Ferry Hatchery. Mean condition factors ranged from 1.02 at Lyons Ferry Hatchery to 1.16 at Big Canyon and Captain John Rapids. Estimated survival (95% confidence interval) of PIT tagged yearlings from release to Lower Granite Dam ranged from 74.4% (73.2-75.5%) for Big Canyon to 85.2% (83.5-87.0%) for Captain John Rapids. Estimated survival from release to McNary Dam ranged from 37.9% (36.0-40.0%) for Pittsburg Landing to 57.9% (53.0-62.8%) for Lyons Ferry Hatchery. Median migration rates to Lower Granite Dam, based on all observations of PIT tagged yearlings from the FCAP facilities, ranged from 6.3 river kilometers per day (rkm/d) for Big Canyon to 10.8 rkm/d for Pittsburg Landing. Median migration rates to McNary Dam ranged from 5.2 rkm/d for Lyons Ferry Hatchery to 10.9 rkm/d for Pittsburg Landing. Median travel times from the FCAP facilities were about 13-17 days to Lower Granite Dam and 31-37 days to McNary Dam. Median arrival dates at Lower Granite Dam, based on all observations of PIT tagged yearling groups from Pittsburg Landing, Big Canyon and Captain John Rapids, were all from April 26-27. Median arrival dates at McNary Dam for Pittsburg Landing, Big Canyon and Captain John Rapids groups were all from May 14-18. The median arrival date at McNary Dam was May 13 for Lyons Ferry Hatchery yearlings.« less

Pathogen Screening of Naturally Produced Yakima River Spring Chinook Smolts; Yakima/Klickitat Fisheries Project Monitoring and Evaluation Report 6 of 7, 2003-2004 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thomas, Joan B.

2004-05-01

In 1999 the Cle Elum Hatchery began releasing spring chinook salmon smolts into the upper Yakima River to increase natural production. Part of the evaluation of this program is to monitor whether introduction of hatchery produced smolts would impact the prevalence of specific pathogens in the naturally produced spring chinook smolts. Increases in prevalence of any of these pathogens could negatively impact the survival of these fish. In 1998 and 2000 through 2003 naturally produced smolts were collected for monitoring at the Chandler smolt collection facility on the lower Yakima River. Smolts were collected from mid to late outmigration, withmore » a target of 200 fish each year. The pathogens monitored were infectious hematopoeitic necrosis virus, infectious pancreatic necrosis virus, viral hemorrhagic septicemia virus, Flavobacterium psychrophilum, Flavobacterium columnare, Aeromonas salmonicida, Yersinia ruckeri, Edwardsiella ictaluri, Renibacterium salmoninarum and Myxobolus cerebralis. To date, only the bacterial pathogens have been detected and prevalences have been low. Prevalences have varied each year and these changes are attributed to normal fluctuation of prevalence. All of the pathogens detected are widely distributed in Washington State.« less

Umatilla Hatchery Satellite Facilities Operation and Maintenance; 1996 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rowan, Gerald D.

1997-06-01

The Confederated Tribes of the Umatilla Indian Reservation (CTUIR) and Oregon Department of Fish and Wildlife (ODFW) are cooperating in a joint effort to enhance steelhead and re-establish salmon runs in the Umatilla River Basin. As an integral part of this program, Bonifer Pond, Minthorn Springs, Imeques C-mem-ini-kem and Thornhollow satellite facilities are operated for acclimation and release of juvenile summer steelhead (Oncorhynchus mykiss), fall and spring chinook salmon (O. tshawytscha) and coho salmon (O. kisutch). Minthorn is also used for holding and spawning adult summer steelhead and Three Mile Dam is used for holding and spawning adult fall chinookmore » and coho salmon. Bonifer, Minthorn, Imeques and Thornhollow facilities are operated for acclimation and release of juvenile salmon and summer steelhead. The main goal of acclimation is to reduce stress from trucking prior to release and improve imprinting of juvenile salmonids in the Umatilla River Basin. Juveniles are transported to the acclimation facilities primarily from Umatilla and Bonneville Hatcheries. This report details activities associated with operation and maintenance of the Bonifer, Minthorn, Imeques, Thornhollow and Three Mile Dam facilities in 1996.« less

Reproductive success of captively bred and naturally spawned Chinook salmon colonizing newly accessible habitat

PubMed Central

Anderson, Joseph H; Faulds, Paul L; Atlas, William I; Quinn, Thomas P

2013-01-01

Captively reared animals can provide an immediate demographic boost in reintroduction programs, but may also reduce the fitness of colonizing populations. Construction of a fish passage facility at Landsburg Diversion Dam on the Cedar River, WA, USA, provided a unique opportunity to explore this trade-off. We thoroughly sampled adult Chinook salmon (Oncorhynchus tshawytscha) at the onset of colonization (2003–2009), constructed a pedigree from genotypes at 10 microsatellite loci, and calculated reproductive success (RS) as the total number of returning adult offspring. Hatchery males were consistently but not significantly less productive than naturally spawned males (range in relative RS: 0.70–0.90), but the pattern for females varied between years. The sex ratio was heavily biased toward males; therefore, inclusion of the hatchery males increased the risk of a genetic fitness cost with little demographic benefit. Measurements of natural selection indicated that larger salmon had higher RS than smaller fish. Fish that arrived early to the spawning grounds tended to be more productive than later fish, although in some years, RS was maximized at intermediate dates. Our results underscore the importance of natural and sexual selection in promoting adaptation during reintroductions. PMID:23467446

Salmonid Gamete Preservation in the Snake River Basin, Annual Report 2002.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Young, William; Kucera, Paul

2003-07-01

In spite of an intensive management effort, chinook salmon (Oncorhynchus tshawytscha) and steelhead (Oncorhynchus mykiss) populations in the Northwest have not recovered and are currently listed as threatened species under the Endangered Species Act. In addition to the loss of diversity from stocks that have already gone extinct, decreased genetic diversity resulting from genetic drift and inbreeding is a major concern. Reduced population and genetic variability diminishes the environmental adaptability of individual species and entire ecological communities. The Nez Perce Tribe (NPT), in cooperation with Washington State University and the University of Idaho, established a germplasm repository in 1992 inmore » order to preserve the remaining salmonid diversity in the region. The germplasm repository provides long-term storage for cryopreserved gametes. Although only male gametes can be cryopreserved, conserving the male component of genetic diversity will maintain future management options for species recovery. NPT efforts have focused on preserving salmon and steelhead gametes from the major river subbasins in the Snake River basin. However, the repository is available for all management agencies to contribute gamete samples from other regions and species. In 2002 a total of 570 viable semen samples were added to the germplasm repository. This included the gametes of 287 chinook salmon from the Lostine River, Catherine Creek, upper Grande Ronde River, Imnaha River (Lookingglass Hatchery), Lake Creek, South Fork Salmon River, Johnson Creek, Big Creek, Capehorn Creek, Marsh Creek, Pahsimeroi River (Pahsimeroi Hatchery), and upper Salmon River (Sawtooth Hatchery) and the gametes of 280 steelhead from the North Fork Clearwater River (Dworshak Hatchery), Fish Creek, Little Sheep Creek, Pahsimeroi River (Pahsimeroi Hatchery) and Snake River (Oxbow Hatchery). In addition, gametes from 60 Yakima River spring chinook and 34 Wenatchee River coho salmon were added to the repository by Washington Department of Fish and Wildlife and Columbia River Intertribal Fish Commission, respectively. To date, a total of 3,928 Columbia River salmon and steelhead gamete samples and three Kootenai River white sturgeon are preserved in the repository. Samples are stored in independent locations at the University of Idaho (UI) and Washington State University (WSU).« less

The influence of cage conditioning on the performance and behavior of Japanese flounder reared for stock enhancement: Burying, feeding, and threat response

NASA Astrophysics Data System (ADS)

Walsh, Michelle L.; Masuda, Reiji; Yamashita, Yoh

2014-01-01

Flatfish reared for stock enhancement often exhibit irregular behavioral patterns compared with wild conspecifics. These “deficits”, mostly attributed to the unnatural characteristics of the hatchery environment, are assumed to translate to increased predation risk. Initially releasing fish in predator-free conditioning cages may help flatfish adjust to the wild environment, establish burial skills, begin pigment change, recover from transport stress, and experience natural (live) food sources before full release into the wild. However, the impact of cage conditioning on the performance and behavior of flatfish has yet to be fully assessed. We conducted video trials with 10-cm, hatchery-reared Japanese flounder, Paralichthys olivaceus, in sand-bottomed aquaria to assess four treatments of flounder: (1) reared fish cage conditioned for 7 d in the shallow coast, (2) reared fish directly from hatchery tanks, (3) wild fish, and (4) reared fish released directly from hatchery tanks into the wild and then recaptured after 6 d at large. Burying ability, predation, and threat response to a model predator were examined. Wild fish buried most, followed by cage conditioned, and released-then-recaptured and non-conditioned (directly from tank) fish. Wild and conditioned fish revealed much lower variation in total movement duration, which corresponded with lower levels and variation in prey vertical movement. Fish of all condition types exhibited a lower number of attacks and off-bottom swimming events, and a lower movement duration when the model predator was in motion versus when it was still. This study is the first to evaluate the behavioral mechanisms of hatchery-reared flatfish that have been cage-conditioned or released-then-recaptured. In addition, we provide evidence that cage conditioning can enhance the performance of released flatfish.

Potential Factors Affecting Survival Differ by Run-Timing and Location: Linear Mixed-Effects Models of Pacific Salmonids (Oncorhynchus spp.) in the Klamath River, California

PubMed Central

Quiñones, Rebecca M.; Holyoak, Marcel; Johnson, Michael L.; Moyle, Peter B.

2014-01-01

Understanding factors influencing survival of Pacific salmonids (Oncorhynchus spp.) is essential to species conservation, because drivers of mortality can vary over multiple spatial and temporal scales. Although recent studies have evaluated the effects of climate, habitat quality, or resource management (e.g., hatchery operations) on salmonid recruitment and survival, a failure to look at multiple factors simultaneously leaves open questions about the relative importance of different factors. We analyzed the relationship between ten factors and survival (1980–2007) of four populations of salmonids with distinct life histories from two adjacent watersheds (Salmon and Scott rivers) in the Klamath River basin, California. The factors were ocean abundance, ocean harvest, hatchery releases, hatchery returns, Pacific Decadal Oscillation, North Pacific Gyre Oscillation, El Niño Southern Oscillation, snow depth, flow, and watershed disturbance. Permutation tests and linear mixed-effects models tested effects of factors on survival of each taxon. Potential factors affecting survival differed among taxa and between locations. Fall Chinook salmon O. tshawytscha survival trends appeared to be driven partially or entirely by hatchery practices. Trends in three taxa (Salmon River spring Chinook salmon, Scott River fall Chinook salmon; Salmon River summer steelhead trout O. mykiss) were also likely driven by factors subject to climatic forcing (ocean abundance, summer flow). Our findings underscore the importance of multiple factors in simultaneously driving population trends in widespread species such as anadromous salmonids. They also show that the suite of factors may differ among different taxa in the same location as well as among populations of the same taxa in different watersheds. In the Klamath basin, hatchery practices need to be reevaluated to protect wild salmonids. PMID:24866173

Protein profiles of hatchery egg shell membrane.

PubMed

Rath, N C; Liyanage, R; Makkar, S K; Lay, J O

2016-01-01

Eggshells which consist largely of calcareous outer shell and shell membranes, constitute a significant part of poultry hatchery waste. The shell membranes (ESM) not only contain proteins that originate from egg whites but also from the developing embryos and different contaminants of microbial and environmental origins. As feed supplements, during post hatch growth, the hatchery egg shell membranes (HESM) have shown potential for imparting resistance of chickens to endotoxin stress and exert positive health effects. Considering that these effects are mediated by the bioactive proteins and peptides present in the membrane, the objective of the study was to identify the protein profiles of hatchery eggshell membranes (HESM). Hatchery egg shell membranes were extracted with acidified methanol and a guanidine hydrochloride buffer then subjected to reduction/alkylation, and trypsin digestion. The methanol extract was additionally analyzed by matrix assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF-MS). The tryptic digests were analyzed by liquid chromatography and tandem mass spectrometry (LC-MS-MS) to identify the proteins. Our results showed the presence of several proteins that are inherent and abundant in egg white such as, ovalbumin, ovotransferrin, ovocleidin-116, and lysozyme, and several proteins associated with cytoskeletal, cell signaling, antimicrobial, and catalytic functions involving carbohydrate, nucleic acid, and protein metabolisms. There were some blood derived proteins most likely originating from the embryos and several other proteins identified with different aerobic, anaerobic, gram positive, gram negative, soil, and marine bacterial species some commensals and others zoonotic. The variety of bioactive proteins, particularly the cell signaling and enzymatic proteins along with the diverse microbial proteins, make the HESM suitable for nutritional and biological application to improve post hatch immunity of poultry.

Recent Salmon Declines: A Result of Lost Feeding Opportunities Due to Bad Timing?

PubMed Central

Chittenden, Cedar M.; Jensen, Jenny L. A.; Ewart, David; Anderson, Shannon; Balfry, Shannon; Downey, Elan; Eaves, Alexandra; Saksida, Sonja; Smith, Brian; Vincent, Stephen; Welch, David; McKinley, R. Scott

2010-01-01

As the timing of spring productivity blooms in near-shore areas advances due to warming trends in global climate, the selection pressures on out-migrating salmon smolts are shifting. Species and stocks that leave natal streams earlier may be favoured over later-migrating fish. The low post-release survival of hatchery fish during recent years may be in part due to static release times that do not take the timing of plankton blooms into account. This study examined the effects of release time on the migratory behaviour and survival of wild and hatchery-reared coho salmon (Oncorhynchus kisutch) using acoustic and coded-wire telemetry. Plankton monitoring and near-shore seining were also conducted to determine which habitat and food sources were favoured. Acoustic tags (n = 140) and coded-wire tags (n = 266,692) were implanted into coho salmon smolts at the Seymour and Quinsam Rivers, in British Columbia, Canada. Differences between wild and hatchery fish, and early and late releases were examined during the entire lifecycle. Physiological sampling was also carried out on 30 fish from each release group. The smolt-to-adult survival of coho salmon released during periods of high marine productivity was 1.5- to 3-fold greater than those released both before and after, and the fish's degree of smoltification affected their downstream migration time and duration of stay in the estuary. Therefore, hatchery managers should consider having smolts fully developed and ready for release during the peak of the near-shore plankton blooms. Monitoring chlorophyll a levels and water temperature early in the spring could provide a forecast of the timing of these blooms, giving hatcheries time to adjust their release schedule. PMID:20805978

Hatchery workers' IgG antibody profiles to airborne bacteria.

PubMed

Brauner, Paul; Gromöller, Silvana; Pfeifer, Yvonne; Wilharm, Gottfried; Jäckel, Udo

2017-04-01

Occupational exposure to high concentrations of airborne bacteria in poultry production is related to an increased risk of respiratory disorders. However, etiology and in particular microorganisms' potential role in pathogenesis still needs to be elucidated. Thus, detection of specific antibodies against occupational microbial antigens may lead to identification of potentially harmful species. For the purpose of IgG titer determination, indirect immunofluorescence on various bacterial isolates from duck hatchery air was combined with image-based quantification of fluorescence intensity. Moreover, in addition to established assays with pure bacterial cultures, a new approach utilized complex bioaerosol samples for detection of anti-microbial antibodies in human sera by determination of percentages of antibody-bound cells in different serum dilutions. Mean titers in sera from hatchery workers and a non-exposed control group did not display significant differences for most tested isolates and application of comprehensive cluster analysis to entire titer data revealed no structure reflecting workers and controls group. Furthermore, determination of immunoreactivity to the complete microbial community in workplace air displayed similar proportions of antibody-bound cells in both groups. Although no general differences in immunoreaction patterns were observed, mean titers to a Proteus mirabilis isolate and to 3 of 4 distinct Acinetobacter baumannii isolates were higher in the group of hatchery workers than in the reference group indicating a potential applicability as exposure markers. We conclude, despite long term bioaerosol exposure, hatchery workers' IgG antibody profiles to tested antigens did not differ substantially from those of the control group. However, increased workers' titers to A. baumannii and clinical relevance of this species should lead to further investigations regarding potential involvement in pathogenesis of occupational respiratory disorders. Copyright © 2017 Elsevier GmbH. All rights reserved.

Judging a salmon by its spots: environmental variation is the primary determinant of spot patterns in Salmo salar.

PubMed

Jørgensen, Katarina M; Solberg, Monica F; Besnier, Francois; Thorsen, Anders; Fjelldal, Per Gunnar; Skaala, Øystein; Malde, Ketil; Glover, Kevin A

2018-04-12

In fish, morphological colour changes occur from variations in pigment concentrations and in the morphology, density, and distribution of chromatophores in the skin. However, the underlying mechanisms remain unresolved in most species. Here, we describe the first investigation into the genetic and environmental basis of spot pattern development in one of the world's most studied fishes, the Atlantic salmon. We reared 920 salmon from 64 families of domesticated, F1-hybrid and wild origin in two contrasting environments (Hatchery; tanks for the freshwater stage and sea cages for the marine stage, and River; a natural river for the freshwater stage and tanks for the marine stage). Fish were measured, photographed and spot patterns evaluated. In the Hatchery experiment, significant but modest differences in spot density were observed among domesticated, F1-hybrid (1.4-fold spottier than domesticated) and wild salmon (1.7-fold spottier than domesticated). A heritability of 6% was calculated for spot density, and a significant QTL on linkage group SSA014 was detected. In the River experiment, significant but modest differences in spot density were also observed among domesticated, F1-hybrid (1.2-fold spottier than domesticated) and wild salmon (1.8-fold spottier than domesticated). Domesticated salmon were sevenfold spottier in the Hatchery vs. River experiment. While different wild populations were used for the two experiments, on average, these were 6.2-fold spottier in the Hatchery vs. River experiment. Fish in the Hatchery experiment displayed scattered to random spot patterns while fish in the River experiment displayed clustered spot patterns. These data demonstrate that while genetics plays an underlying role, environmental variation represents the primary determinant of spot pattern development in Atlantic salmon.

Molecular epidemiology reveals emergence of a virulent infectious hematopoietic necrosis (IHN) virus strain in wild salmon and its transmission to hatchery fish

USGS Publications Warehouse

Anderson, Eric D.; Engelking, H. Mark; Emmenegger, Eveline J.; Kurath, Gael

2000-01-01

Infectious hematopoietic necrosis virus (IHNV) has been known to be a significant salmonid pathogen in the Pacific Northwest of North America for decades. The goal of this study was to characterize the IHNV genetic heterogeneity and viral traffic over time at a study site in the Deschutes River watershed in Oregon, with an emphasis on the epidemiology of IHNV types causing epidemics in wild kokanee Oncorhynchus nerkabetween 1991 and 1995. The study site included kokanee spawning grounds in the Metolius River and Lake Billy Chinook downstream, in which the IHNV epidemics occurred in 2- and 3-year-old kokanee, and the Round Butte Fish Hatchery at the outflow of the lake. Forty-two IHNV isolates collected from this area between 1975 and 1995 were characterized on a genetic basis by ribonuclease (RNase) protection fingerprint analyses of the virus nucleocapsid, glycoprotein, and nonvirion genes. Analysis of the 16 identified composite haplotypes suggested that both virus evolution and introduction of new IHNV strains contributed to the genetic diversity observed. The results indicated that the 1991–1995 epidemics in kokanee from Lake Billy Chinook were due to a newly introduced IHNV type that was first detected in spawning adult kokanee in 1988 and that this virus type was transmitted from the wild kokanee to hatchery fish downstream in 1991. Twelve IHNV haplotypes were found at Round Butte Fish Hatchery, indicating a series of virus displacement events during the 20-year period examined. This work shows that IHNV traffic can be much more complex than was previously recognized, and the results have implications for fisheries management at the hatchery and throughout the watershed.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Novotny, Anthony J.; Zaugg, Waldo S.

The National Marine Fisheries Service (NMFS), under contract to the Bonneville Power Administration, is conducting research on imprinting salmon and steelhead for homing (Slatick et al. 1979, 1980; Novotny and Zaugg 1979). The studies were begun with little background knowledge of the effects of disease or certain physiological functions on imprinting and homing in salmonids. Consequently, work aimed at filling this void was begun by the authors in 1978 (Novotny and Zaugg 1979) and continued in 1979. In 1979, we examined random samples of normal populations of homing test fish at the hatcheries to determine the physiological readiness to migratemore » and adapt to seawater and general fish health. At the Manchester Marine Experimental Station, Manchester, Washington, we determined the survival of samples of the test fish maintained in marine net-pens after release from the hatcheries. Hatcheries and stocks sampled are listed in Table 1.« less

Spring Chinook Salmon Production for Confederated Tribes of the Umatilla Indian Reservation, Little White Salmon National Fish Hatchery, Annual Report 2006.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Doulas, Speros

2007-01-01

This annual report covers the period from January 1, 2006 through December 31, 2006. Work completed supports the Confederated Tribes of the Umatilla Indian Reservation (CTUIR) effort to restore a locally-adapted stock of spring Chinook to the Umatilla River Basin. During the year, staff at the Little White Salmon/Willard National Fish Hatchery Complex have completed the rearing of 218,764 Brood Year 2004 spring Chinook salmon for release into the Umatilla River during spring 2006 and initiated production of approximately 220,000 Brood Year 2005 spring Chinook for transfer and release into the Umatilla River during spring 2007. All work under thismore » contract is performed at the Little White Salmon and Willard National Fish Hatcheries (NFH), Cook, WA.« less

Survival and migration behavior of juvenile salmonids at Lower Granite Dam, 2006

USGS Publications Warehouse

Beeman, John W.; Fielding, Scott D.; Braatz, Amy C.; Wilkerson, Tamara S.; Pope, Adam C.; Walker, Christopher E.; Hardiman, Jill M.; Perry, Russell W.; Counihan, Timothy D.

2008-01-01

We described behavior and estimated passage and survival parameters of juvenile salmonids during spring and summer migration periods at Lower Granite Dam in 2006. During the spring, the study was designed to examine the effects of the Behavioral Guidance Structure (BGS) by using a randomized-block BGS Stored / BGS Deployed treatment design. The summer study was designed to compare passage and survival through Lower Granite Dam using a randomized-block design during two spill treatments while the BGS was in the stored position. We used the Route Specific Survival Model to estimate survival and passage probabilities of hatchery yearling Chinook salmon, hatchery juvenile steelhead, and hatchery and wild subyearling Chinook salmon. We also estimated fish guidance efficiency (FGE), fish passage efficiency (FPE), Removable Spillway Weir passage effectiveness (RPE), spill passage effectiveness (SPY), and combined spill and RSW passage effectiveness.

Development of an Implantable Fish Spawning Sensor Tag

DTIC Science & Technology

2013-09-24

Manatee Hatchery Facility, Port Manatee , Florida) using a Millar Instruments pressure catheter inserted a fixed distance (15cm) into the ovary before and...red drum aquaculture facility in Port Manatee , Florida (or similar aquaculture facility where spawning fishes are kept). This facility maintains a...at the Port Manatee hatchery and phase three tests on goliath grouper in the field. RESULTS *Please refer to other sections for more details and

Phytoplankton production systems in a shellfish hatchery: variations of the bacterial load and diversity of vibrios.

PubMed

Dubert, J; Fernández-Pardo, A; Nóvoa, S; Barja, J L; Prado, S

2015-06-01

Outbreaks of disease caused by some Vibrio species represent the main production bottleneck in shellfish hatcheries. Although the phytoplankton used as food is one of the main sources of bacteria, studies of the associated bacterial populations, specifically vibrios, are scarce. The aim of the study was the microbiological monitoring of the microalgae as the first step in assessing the risk disease for bivalve cultures. Two phytoplankton production systems were sampled weekly throughout 1-year period in a bivalve hatchery. Quantitative analysis revealed high levels of marine heterotrophic bacteria in both systems throughout the study. Presumptive vibrios were detected occasionally and at low concentrations. In most of the cases, they belonged to the Splendidus and Harveyi clades. The early detection of vibrios in the microalgae may be the key for a successful bivalve culture. Their abundance and diversity were affected by factors related to the hatchery environment. This work represents the first long study where the presence of vibrios was evaluated rigorously in phytoplankton production systems and provides a suitable microbiological protocol to control and guarantee the quality of the algal cultures to avoid the risk of transferring potential pathogens to shellfish larvae and/or broodstock. © 2015 The Society for Applied Microbiology.

Histopathology of kidney disease in fish

USGS Publications Warehouse

Wood, E.M.; Yasutake, W.T.

1956-01-01

Kidney disease is one of the most puzzling fish diseases known to exist in the United States. In less than Io years it has invaded the Pacific Northwest, exacting a heavy toll of hatchery salmon. Its first appearance apparently was in Massachusetts where Belding and Merrill' described a disease similar to that now seen on the Pacific Coast. In I946 it was diagnosed in Washington2 and since that time has been observed in an ever increasing number of hatcheries. There are unpublished reports of the same or similar diseases in both California and Washington in the early I93o's.3 The latest outbreaks occurred in the Federal hatcheries at Berlin, New Hampshire, and Cortland, New York, in brook, brown, and rainbow trout.4 There is evidence to indicate that the disease may be much more widely spread in New York State.5 The disease is especially dangerous since little is known of the origin or source of the causative agent. Indeed, the classification of the diplobacillus associated with kidney disease is still uncertain. Thus, with our present knowledge, it is difficult or impossible to eradicate the malady from an infected hatchery. Histopathologic studies were undertaken to clarify the pathology of the disease and to compare the eastern form with the western form.

Rapid discovery of SNPs differentiating hatchery steelhead trout from ESA-listed natural-origin steelhead trout using a 57K SNP array

USGS Publications Warehouse

Larson, Wesley; Palti, Yniv; Gao, G.; Warheit, Kenneth I.; Seeb, James E.

2017-01-01

Natural-origin steelhead trout (Oncorhynchus mykiss (Walbaum, 1792)) in the Pacific Northwest, USA, are threatened by a number of factors including habitat destruction, disease, decline in marine survival, and a potential erosion of genetic viability due to introgression from hatchery strains. Our major goal was to use a recently developed SNP array containing ∼57 000 SNPs to identify a subset of SNPs that differentiate hatchery and natural-origin populations. We analyzed 35 765 polymorphic SNPs in nine populations of steelhead trout sampled from Puget Sound, Washington, USA. We then conducted two outlier tests and found 360 loci that were candidates for divergent selection between hatchery and natural-origin populations (mean FCT = 0.29, maximum = 0.65) and 595 SNPs that were candidates for selection among natural-origin populations (mean FST = 0.25, maximum = 0.51). Comparisons with a linkage map revealed that two chromosomes (Omy05 and Omy25) contained significantly more outliers than other chromosomes, suggesting that regions on Omy05 and Omy25 may be of adaptive significance. Our results highlight several advantages of the 57 000 SNP array as a tool for population and conservation genomics studies.

Aggression and feeding of hatchery-reared and naturally reared steelhead (Oncorhynchus mykiss) fry in a laboratory flume and a comparison with observations in natural streams

USGS Publications Warehouse

Riley, S.C.; Tatara, C.P.; Scheurer, J.A.

2005-01-01

We quantified the aggression and feeding of naturally reared steelhead (Oncorhynchus mykiss) fry stocked into a laboratory flume with naturally reared fry or hatchery-reared fry from conventional and enriched rearing environments at three densities in the presence and absence of predators, and compared the aggression and feeding observed in the flume to that observed in two streams. Steelhead fry attack rate increased with density and was reduced in the presence of predators, but was not affected by rearing treatment. Threat rate appeared to increase with density and was significantly affected by rearing treatment combination, but was not significantly affected by predator presence. Feeding rate was not affected by density or rearing treatment, but was reduced in the presence of predators. The rate of aggression by steelhead fry in two streams was lower than that observed in the laboratory and did not increase with density. Rates of aggression and feeding of hatchery-reared and wild steelhead fry were not significantly different in the streams. Overall, we found no evidence that hatchery rearing environments caused higher aggression in steelhead fry. Laboratory observations of salmonid aggression, particularly at high density, may not reflect aggression levels in the wild. ?? 2005 NRC.

Understanding the Effects of Diet on Larval Crassostrea virginica: A Comparison of Commercial Concentrates and Live Algal Feed

NASA Astrophysics Data System (ADS)

Williams, C. T.; Krause, J. W.; Walton, W. C.

2016-02-01

Traditionally shellfish hatcheries produce live microalgal cultures to feed larvae. This process is time consuming, labor intensive, expensive, and requires a large and sterile environment. The use of commercial microalgal concentrates allows hatcheries to reduce operational costs and optimize floor space; however, there have been no systematic studies examining the relative yields from live algal vs. concentrate-based diets. The effects of diet type on the growth-rate, survival, and settling efficiency of Crassostrea virginica were explored by varying diet proportions in two-day old spawned larvae through metamorphosis and settlement. Live microalgal feed was blended from axenic Isochrysis, Tetraselmis, Pavlova, and Chaetoceros cultures to mimic typical hatchery recipes. The live microalgae was supplemented with variable amounts of the concentrate, Reed Mariculture Shellfish Diet 1800™, across multiple treatments ranging from 100% concentrate vs. 100% live diet. Caloric content was used to normalize between the diet types to achieve treatments with 25, 50 and 75% live diet supplemented with proportional amounts of concentrate (e.g. 75, 50, and 25% concentrate, respectively). The goal of this method was to show whether survival and settling rates depend on the proportion of live microalgal diet. Such data will inform a cost-benefit analysis of whether concentrates are a financially viable alternative for oyster hatcheries.

Pilot study to access the role of Ceratomyxa shasta infection in mortality of fall-run Chinook smolts migrating through the lower Klamath River in 2008

USGS Publications Warehouse

Foott, Scott; Stutzer, Greg; Fogerty, R.; Hansel, Hal; Juhnke, Steven; Beeman, John W.

2009-01-01

Apparent survival and migration rate of radio-tagged hatchery subyearling Chinook salmon released at Iron Gate Hatchery was monitored in the Klamath River to see if the timing of mortality coincided with observations of ceratomyxosis in re-captured coded wire tag cohorts. Despite rapid emigration, these relatively large (mean fork length 92 mm) smolts had a cumulative apparent survival to the estuary of 0.074 (SE 0.024) and standardized rates of survival per 100 km tended to decrease linearly with distance from the hatchery. The last fish detection occurred 26 days after release but median travel time between Iron Gate Hatchery (rkm 309) and the last receiver near the Klamath estuary (Blake’s Riffle rkm 13) was about 10 days. The majority of apparent mortality (8-10 d post-release) occurred before disease from Ceratomyxa shasta infection is expected after exposure to infectious waters. Despite numerous observations of ceratomyxosis in the Klamath R. during June, an obvious link between disease and apparent survival was not present in this study. Future studies should examine the acute (e.g., predator types and densities) and chronic (e.g., swimming performance impairment due to disease) mortality factors for juvenile Chinook salmon smolts in the Klamath River.

Comparative Survival Study (CSS) of PIT-Tagged Spring/Summer Chinook and Summer Steelhead : 2008 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Comparative Survival Study Oversight Committee and Fish Passage Center

2008-12-02

The Comparative Survival Study (CSS; BPA Project 199602000) began in 1996 with the objective of establishing a long term dataset of the survival rate of annual generations of salmon from their outmigration as smolts to their return to freshwater as adults to spawn (smolt-to-adult return rate; SAR). The study was implemented with the express need to address the question whether collecting juvenile fish at dams and transporting them downstream in barges and trucks and releasing them downstream of Bonneville Dam was compensating for the effect of the Federal Columbia River Power System (FCRPS) on survival of Snake Basin spring/summer Chinookmore » salmon migrating through the hydrosystem. The Completion of this annual report for the CSS signifies the 12th outmigration year of hatchery spring/summer Chinook salmon marked with Passive Integrated Transponder (PIT) tags as part of the CSS and the 9th complete brood year return as adults of those PIT-tagged fish (report covers adult returns from 1997-2006 hatchery Chinook juvenile migrations). In addition, the CSS has provided PIT-tags to on-going tagging operations for wild Chinook since 2002 (report covers adult returns from 1994-2006 wild Chinook juvenile migrations). The CSS tags wild steelhead on the lower Clearwater River and utilized wild and hatchery steelhead from other tagging operations in evaluations of transportation (report covers adult returns from 1997-2005 wild and hatchery steelhead migrations). The primary purpose of this report is to update the time series of smolt-to-adult survival rate data and related parameters with additional years of data since the completion of the CSS 10-yr retrospective analysis report (Schaller et al 2007). The 10-yr report provided a synthesis of the results from this ongoing study, the analytical approaches employed, and the evolving improvements incorporated into the study as reported in CSS annual progress reports. This current report specifically addresses the constructive comments of the most recent regional technical review conducted by the Independent Scientific Advisory Board and Independent Scientific Review Panel (ISAB and ISRP 2007). This report completes the 3-salt returns from migration years 2004 for wild and hatchery Chinook and steelhead (all returns are to Lower Granite Dam). For wild and hatchery Chinook, this report also provides 3-salt returns from migration year 2005 and 2-salt returns from migration year 2006 through a cutoff date of August 13, 2008. For wild and hatchery steelhead, it provides completed 2-salt returns for wild and hatchery steelhead that outmigrated in 2005 (any 3-salt returns of PIT-tagged steelhead are few, but will occur after July 1, 2008). All of the Chinook salmon evaluated in the CSS study exhibit a stream-type life history. All study fish used in this report were uniquely identifiable based on a PIT-tag implanted in the body cavity during (or before) the smolt life stage and retained through their return as adults. These tagged fish can then be detected as juveniles and adults at several locations of the Snake and Columbia rivers. Reductions in the number of individuals detected as the tagged fish grow older provide estimates of survival. This allows comparisons of survival over different life stages between fish with different experiences in the hydrosystem (e.g. transportation vs. in-river migrants and migration through various numbers of dams) as illustrated in Figure 1.1. The CSS is a long term study within the Northwest Power and Conservation Council's Columbia Basin Fish and Wildlife Program (NPCC FWP) and is funded by Bonneville Power Administration (BPA). Study design and analyses are conducted through a CSS Oversight Committee with representation from Columbia River Inter-Tribal Fish Commission (CRITFC), Idaho Department of Fish and Game (IDFG), Oregon Department of Fish and Wildlife (ODFW), U.S. Fish and Wildlife Service (USFWS), and Washington Department of Fish and Wildlife (WDFW). The Fish Passage Center (FPC) coordinates the PIT-tagging efforts, data management and preparation, and CSSOC work. The location of all tagging sites is identified in Figures 1.2 and 1.3. All draft and final written work products are subject to regional technical and public review and are available electronically on FPC and BPA websites: FPC: http://www.fpc.org/documents/CSS.html; and BPA: http://www.efw.bpa.gov/searchpublications/index.aspx?projid.« less

Genetic differences between hatchery and wild steelhead for survival, growth, dispersal, and male maturation in a natural stream (Study site: Twenty-Mile Creek; Stocks: Dworshak hatchery and Selway River wild; Year classes: 1994 and 1995): Chapter 3

USGS Publications Warehouse

Rubin, Stephen P.; Reisenbichler, Reginald R.; Hensleigh, Jay E.; Wetzel, Lisa A.; Baker, Bruce M.; Leonetti,; Stenberg, Karl D.; Slatton, Stacey L.; Rubin, Stephen P.; Reisenbichler, Reginald R.; Wetzel, Lisa A.; Hayes, Michael C.

2012-01-01

This study was initiated in the early 1990s to provide managers with data comparing genetic fitness for natural rearing, as measured by survival of juveniles in freshwater, between steelhead Oncorhynchus mykiss from Dworshak National Fish Hatchery and wild steelhead from the Clearwater River, Idaho. We artificially spawned hatchery steelhead and wild steelhead from the Selway River, a Clearwater River tributary, released the resulting genetically marked (at the PEPA allozyme locus) progeny (HxH, HxW from hatchery females and wild males, and WxW) as unfed fry in a second order tributary of the South Fork Clearwater River, and monitored fish residing in the stream or emigrating from it for five years. Barrier falls prevented access to the stream by naturally produced steelhead. Over 90% of the emigrants were one or two years of age and too small to be smolts (mean fork length at age-2 = 103 mm). Per fry released, the HxH cross produced 0.64-0.83 times as many emigrants as the WxW cross (P<0.05). The HxH cross produced 0.63 times as many age-4 residuals as the WxW cross for one year-class (P=0.051) and 0.68 times as many for the other (ns). Survival from age-1 to age-4 was lower for HxH than for WxW residuals of one year-class (P<0.05) and survival from age-2 to age-4 may have been lower for HxH than for WxW residuals of the other (P=0.062). Collectively, these results indicate lower survival for HxH than for WxW fish. Size was often greater for HxH than for WxW fish indicating faster growth for the former, and condition factor was also usually greater for HxH than for WxW fish. Dispersal of fry from release sites and emigration of one- and two-year olds from the study stream were greater for WxW than for HxH fish, and apparently neither was from competitive displacement of small by larger fish. Incidence of flowing milt was higher for HxH than for WxW fish at age-2. Peak incidence of flowing milt for older residuals was similar among crosses (about 50%), but the peak occurred at greater size and age for WxW than for HxH residuals. HxW fish were intermediate between HxH and WxW fish, not similar to HxH fish, in survival, growth, condition, dispersal, and maturation, so differences among crosses likely resulted from additive genetic differences between the hatchery and wild populations rather than from maternal differences between hatchery and wild females. During our study, local managers decided against supplementing most wild steelhead populations in the Clearwater basin. Our study indicates that supplementing with Dworshak Hatchery fish is likely to reduce the fitness of wild populations through interbreeding and therefore supports that decision. 

Monitoring and Evaluation of Smolt Migration in the Columbia Basin : Volume IX : Evaluation of the 2001 Predictions of the Run-Timing of Wild and Hatchery-Reared Migrant Salmon and Steelhead Trout Migrating to Lower Granite, Rock Island, McNary, and John Day Dams using Program RealTime.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Burgess, Caitlin; Skalski, John R.

2001-12-01

Program RealTime provided tracking and forecasting of the 2001 inseason outmigration via the internet for eighteen PIT-tagged stocks of wild salmon and steelhead to Lower Granite and/or McNary dams and eleven passage-indexed stocks to Rock Island, McNary, or John Day dams. Nine of the PIT-tagged stocks tracked this year were new to the project. Thirteen ESUs of wild subyearling and yearling chinook salmon and steelhead, and one ESU of hatchery-reared sockeye salmon were tracked and forecasted to Lower Granite Dam. Eight wild ESUs of subyearling and yearling chinook salmon, sockeye salmon and steelhead were tracked to McNary Dam for themore » first time this year. Wild PIT-tagged ESUs tracked to Lower Granite Dam included yearling spring/summer chinook salmon release-recovery stocks (from Bear Valley Creek, Catherine Creek, Herd Creek, Imnaha River, Johnson Creek, Lostine River, Minam River, South Fork Salmon River, Secesh River, and Valley Creek), PIT-tagged wild runs-at-large of yearling chinook salmon and steelhead, and a PIT-tagged stock of subyearling fall chinook salmon. The stock of hatchery-reared PIT-tagged summer-run sockeye salmon smolts outmigrating to Lower Granite Dam, consisted this year of a new stock of fish from Alturas Lake Creek, Redfish Lake Creek Trap and Sawtooth Trap. The passage-indexed stocks, counted using FPC passage indices, included combined wild- and hatchery-reared runs-at-large of subyearling and yearling chinook, coho, and sockeye salmon, and steelhead migrating to Rock Island and McNary dams, and, new this year, combined wild and hatchery subyearling chinook salmon to John Day Dam. Unusual run-timing and fish passage characteristics were observed in this low-flow, negligible-spill migration year. The period for the middle 80% of fish passage (i.e., progress from the 10th to the 90th percentiles) was unusually short for nine out of ten PIT-tagged yearling spring/summer chinook salmon stocks tracked to Lower Granite Dam. It was the shortest on record for seven of these ten stocks. The nine stocks recording unusually short middle 80% periods also recorded higher-than-average recovery percentages. However the opposite trend was observed for the PIT-tagged wild subyearling chinook salmon and hatchery sockeye salmon stocks whose middle 80% period of passage to Lower Granite Dam was average to above average. Recovery percentages for these two stocks were average, compared to historical recoveries. The performance results of Program RealTime to make accurate predictions of percentiles of fish passage at an index site were mixed this year. The release-recovery stocks of wild PIT-tagged spring/summer chinook salmon tracked to Lower Granite Dam were predicted less accurately than usual, on average, with two exceptions. One of these exceptions was a stock that had its best prediction (first-half, last-half, and season-wide) ever to occur. On average, however, performance was down for predicting these stocks. The RealTime Select composite season-wide MAD was 4.3%, larger than the historical average of 2.1%. Passage percentiles for PIT-tagged runs-at-large of wild Snake River yearling and subyearling chinook salmon and of wild steelhead outmigrating to Lower Granite Dam were predicted very well this year, their second year of inclusion in the project, with season-wide MADs of 3.6%, 4.7%, and 1.8% respectively. These results, too, were mixed with respect to comparison with last year's performance. The yearling chinook stock was predicted somewhat better last year (up from 1.7% last year to 3.6% this year) but the subyearling chinook salmon and steelhead stocks were predicted better this year than last, season-wide. The steelhead stock, in particular, was predicted much better this year than last year, down to 1.8% this year from 4.8% last year. The PIT-tagged runs-at-large of wild salmon and steelhead tracked to McNary Dam in 2001 for the first time, were also well-predicted. In particular, the Snake River stocks were well-predicted, with season-wide MADs of 4.7% for subyearling chinook salmon, 3.3% for yearling chinook salmon, and 1.4% for steelhead. All three Snake River stocks were better predicted at McNary Dam than they were at Lower Granite Dam. The Upper Columbia River PIT-tagged runs-at-large of wild subyearling chinook salmon and wild steelhead were not predicted with the remarkable accuracy of the Snake River stocks, but RealTime performance for these stocks was still good, with season-wide MADs of 7.9% and 4.9%, respectively. The results of RealTime predictions of FPC passage-indexed percentiles of combined wild and hatchery-reared salmonids to Rock Island and McNary dams were comparable to last year with respect to the large variability in performance. Like last year some runs were predicted very well while others were predicted very poorly. The stocks predicted best and worst last year were not necessarily the stocks predicted best and worst this year.« less

The nutrition of salmonid fishes. II. Studies on production diets

USGS Publications Warehouse

1957-01-01

The purpose of this paper is to describe the diets which are now used to raise salmonoid fishes in the Pacific Coast states, to present the variation which exists in the proximate an alysis of these diets and to relate the diet composition to the body composition of the hatchery product. The factors in strumental in producing the extreme differences in body com position between wild and hatchery fish Avere of particular interest.

Salmonella Virchow in a Chicken-packing Station and Associated Rearing Units

PubMed Central

Pennington, J. H.; Brooksbank, N. H.; Poole, Pauline M.; Seymour, F.

1968-01-01

In tracing the source of an outbreak of food-poisoning with Salmonella virchow a chicken-packing station and associated rearing farms were investigated. The serotype was found in chickens in 9 of the 14 rearing farms investigated and in the hatchery, but not in the breeding flocks supplying the hatchery. Several personnel on the farms were affected. The infection was most likely to have been introduced by contaminated feeding-stuffs. PMID:5750405

Wynoochee Hydropower/Fish Hatchery Study: Draft Feasibility Report and Environmental Impact Statement

DTIC Science & Technology

1981-11-01

c . Distribute any energy and capacity which is produced from the hydropower facility. d . Furnish power free of cost to the United States for...and the State of Washington would be the local sponsor of the fish C -35 L NPSEN-PL-HP Honorable John D . Spellman hatchery. The combined project would...sharing poli cy, provi~de a cash contribution equal to 10 percent of the allocated 3 C -

Corps of Engineers’ Acquisition of Fish Hatchery Proves Costly.

DTIC Science & Technology

1981-09-18

location, size, esti- mated cost, design , and construction timetables for facilities needed to meet the steelhead production requirements. To limit...hatchery "* * * is not recognized to be one of the more efficient and productive facilities in Idaho due to obvious con- straints in design , construction...agency’s decision to supply the product or service it- self because it would cost less must be supported by a comparativ , cost analysis. According to Corps

The bacterial diseases of fish

USGS Publications Warehouse

Fish, F.F.

1935-01-01

Of all the diseases responsible for the losses in the hatchery, those caused by the microscopic one-celled organisms, the bacteria, are the most common and present the most serious problem to the hatcheryman. They are found at practically every trout and salmon hatchery during some period of the year. The symptoms of the diseases they cause are difficult to recognize. This in itself is a hazard because treatment, to be successful, must be applied during the early stages or, in cases where no method of treatment is effective, the infected fish must be destroyed before the disease spreads to other parts of the hatchery. Here we have a group of diseases practically universal in distribution, difficult to recognize, and hard to treat even in those cases where a remedy is known. Every hatcheryman should be well acquainted with them for efficient and intelligent control. There follows a brief summary of the present status of our knowledge of the individual diseases.

Conceptual Model of Hydrologic and Thermal Conditions of the Eastbank Aquifer System near Rocky Reach Dam, Douglas County, Washington

USGS Publications Warehouse

van Heeswijk, Marijke; Cox, Stephen E.; Huffman, Raegan L.; Curran, Christopher A.

2008-01-01

The Lower and Combined Aquifers of the Eastbank Aquifer system, located in a river-terrace deposit along the Columbia River near Rocky Reach Dam, Washington, are primarily recharged by the Columbia River and provide water to the Eastbank Hatchery and the regional water system servicing the cities of Wenatchee, East Wenatchee, and parts of unincorporated Chelan and Douglas Counties. In 2006, mean annual pumpage from the aquifers by the hatchery and regional water system was about 43 and 16 cubic feet per second, respectively. Reportedly, temperatures of ground water pumped by the hatchery have been increasing, thereby making water potentially too warm for salmonid fish production. An evaluation of hourly ground-water and river temperatures from January 1991 through August 2007 indicates increasing interannual trends in temperatures in most of the Lower and Combined Aquifers from 1999 through 2006 that correspond to increasing trends in the annual mean and annual maximum river temperatures during the same period of 0.07 and 0.17?C per year, respectively. There were no trends in the annual minimum river temperatures from 1999 through 2006, and there were no trends in the annual minimum, mean, and maximum river temperatures from 1991 through 1998 and from 1991 through 2007. Increases in river temperatures from 1999 through 2006 are within the natural variability of the river temperatures. Most of the Lower and Combined Aquifers reached thermal equilibrium?defined by constant time lags between changes in river temperatures and subsequent changes in ground-water temperatures?during 1991?98. The only exceptions are the Combined Aquifer north of the well field of the regional water system, which had not reached thermal equilibrium by 2006, and the Lower Aquifer west of the well fields of the hatchery and the regional water system, which reached thermal equilibrium prior to 1991. Because most of the Lower and Combined Aquifers were in thermal equilibrium from 1999 through 2006 and seasonal pumpage patterns were relatively stable, reported trends of increasing temperatures of water pumped by the hatchery well field are most likely explained by increasing trends in river temperatures. Most of the water pumped by the hatchery well field recharges in an area west to southwest of the well field about 2 months prior to the time it is pumped from the aquifer. The northern extent of the hatchery well field may pump some colder water from a bedrock depression to the north and west of the well field. The conceptual model of hydrologic and thermal conditions is supported by analyses of historical water temperatures, water-level data collected on July 18, 2007, and dissolved-constituent and bacterial concentrations in samples collected on August 20?22, 2007.

Establishing a baseline and faunal history in amphibian monitoring programs: The amphibians of Harris Neck, GA

USGS Publications Warehouse

Dodd, C.K.; Barichivich, W.J.

2007-01-01

We conducted an intensive inventory of Harris Neck National Wildlife Refuge in coastal Georgia to determine the feasibility of establishing an amphibian monitoring program at this location. Thirteen semi-aquatic amphibian species were identified at 21 locations. Amphibian species richness at Harris Neck was similar to that of nearby barrier islands. The amphibian fauna of Harris Neck has long been affected by human-induced landscape changes, including the inadvertent introduction of tadpoles from distant fish hatcheries and the creation of artificial impoundments. Land-use history provides important information necessary to understand current amphibian distribution, especially when census data are used to establish a baseline from which to monitor future status and trends.

Yakima/Klickitat Production Preliminary Design Report, Appendix C: Yakima and Klickitat Preliminary Engineering Reports.

DOE Office of Scientific and Technical Information (OSTI.GOV)

CH2M Hill; R.W. Beck and Associates.

1990-03-01

This chapter describes the biological and physical fish culture requirements of the hatchery system from which the concepts for the design are formulated. It includes a discussion of the program goals for fish production in the Yakima Basin followed by a brief summary of selected sites. The biological criteria are presented for the water system, adult holding, incubation, rearing, and finally transportation and release. The biological criteria address the water and space requirements, the number and type of vessels, and the related support requirements. To be assured that the components of the system meet all program demands, each life phasemore » from adult capture to the juvenile or smolt transfer into the acclimation sites is analyzed.« less

Rock Island Dam Smolt Monitoring; 1994-1995 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Truscott, Keith B.; Fielder, Paul C.

1995-10-01

Downstream migrating salmon and steelhead trout (Oncorhynchus spp.) smolts were monitored at the Rock Island Dam bypass trap from April 1 - August 31, 1954. This was the tenth consecutive year that the bypass trap was monitored. Data collected included: (1) number of fish caught by species, (2) number of adipose clipped and/or Passive Integrated Transponder (PIT) tagged fish caught by species, (3) daily average riverflow, (4) daily average powerhouse No. 1 and No. 2 flows and daily average spill. These data were transmitted to the Fish Passage Center, which manages the Smolt Monitoring Program throughout the Columbia River Basin.more » The Smolt Monitoring Program is used to manage the {open_quotes}water budget{close_quotes}, releasing upstream reservoir water storage allocated to supplement river flows to enhance survival of downstream migrating juvenile salmonids. The Rock Island Dam trapping facility collected 37,795 downstream migrating salmonids in 1994. Collected fish included 4 yearling and 4 sub-yearling chinook salmon (O. tshawytscha) that had been previously PIT tagged to help determine migration rates. Additionally, 1,132 sub-yearling chinook, 4,185 yearling chinook, 6,627 steelhead, (O. mykiss) and 422 sockeye (O. nerka) with clipped adipose fins were collected. The middle 80% of the 1994 spring migration (excluding sub-yearling chinooks) passed Rock Island Dam during a 34 day period, April 25 - May 28. Passage rates of chinook and steelhead smolts released from hatcheries and the downstream migration timing of all salmonids are presented. The spring migration timing of juvenile salmonids is strongly influenced by hatchery releases above Rock Island Dam.« less

Behavior and dam passage of juvenile Chinook salmon at Cougar Reservoir and Dam, Oregon, March 2011 - February 2012

USGS Publications Warehouse

Beeman, John W.; Hansel, Hal C.; Hansen, Amy C.; Haner, Philip V.; Sprando, Jamie M.; Smith, Collin D.; Evans, Scott D.; Hatton, Tyson W.

2013-01-01

The movements and dam passage of juvenile Chinook salmon implanted with acoustic transmitters and passive integrated transponder tags were studied at Cougar Reservoir and Dam, near Springfield, Oregon. The purpose of the study was to provide information to aid with decisions about potential alternatives for improving downstream passage conditions for juvenile salmonids in this flood-control reservoir. In 2011, a total of 411 hatchery fish and 26 wild fish were tagged and released during a 3-month period in the spring, and another 356 hatchery fish and 117 wild fish were released during a 3-month period in the fall. A series of 16 autonomous hydrophones throughout the reservoir and 12 hydrophones in a collective system near the dam outlet were used to determine general movements and dam passage of the fish over the life of the acoustic transmitter, which was expected to be about 3 months. Movements within the reservoir were directional, and it was common for fish to migrate repeatedly from the head of the reservoir downstream to the dam outlet and back to the head of the reservoir. Most fish were detected near the temperature control tower at least once. The median time from release near the head of the reservoir to detection within about 100 meters of the dam outlet at the temperature control tower was between 5.7 and 10.8 days, depending on season and fish origin. Dam passage events occurred over a wider range of dates in the spring and summer than in the fall and winter, but dam passage numbers were greatest during the fall and winter. A total of 10.5 percent (43 of 411) of the hatchery fish and 15.4 percent (4 of 26) of the wild fish released in the spring are assumed to have passed the dam, whereas a total of 25.3 percent (90 of 356) of the hatchery fish and 16.9 percent (30 of 117) of the wild fish released in the fall are assumed to have passed the dam. A small number of fish passed the dam after their transmitters had stopped working and were detected at passive integrated transponder detectors at various locations downstream of the dam, indicating some tagged fish passed the dam undetected. The rate of dam passage was affected by diel period, discharge, and reservoir elevation. Diel period was the most influential factor of those examined, with nighttime dam passage rates about 9 times greater than daytime rates, depending on the distance of fish from the dam outlet. Dam passage rates also were positively related to dam discharge, and negatively related to reservoir elevation. In the operational condition used as an example, fish approached the dam outlet at the temperature control tower from the south and east and, when most fish got near the tower, they were directly in front of it. In many cases, the results for wild and hatchery fish were similar, or the results suggested hatchery fish could be reasonable surrogates for wild fish. Hatchery-origin and wild-origin fish behaved similarly in the following ways: their general movements in the reservoir; the timing of their dam passage; and the effects of diel period, discharge, and elevation on their passage rates. Parasitic copepods were present on most wild fish examined, and the mortality of wild fish during capture, handling and tagging was much greater than that of hatchery fish. This suggests that the ability of wild fish to cope with stressors may be less than that of fish directly from the hatchery.

A Bioassay Experiment to Determine Water Quality Impacts Related to Trout Mortality at a Hatchery Downstream of Lake Sidney Lanier, Georgia.

DTIC Science & Technology

1982-03-01

mercial products . v1i - - ~ - - . . . - ~ -- w ~ -~. -4~. ABSTRACT A major trout kill occurred at Buford Trout Hatchery in northern Georgia during its...Hydraulic Design Dean Scott, Construction Technician Eddie Taylor, Construction Technician Document Prod uction Deb Kramer, Document Production Manager...aroused no suspicion of any toxicant from municipal or industrial discharges nor from any non-point source. No abnormal levels of chlorinated hydrocar

A multiplex PCR method for rapid identification of Brachionus rotifers.

PubMed

Vasileiadou, Kalliopi; Papakostas, Spiros; Triantafyllidis, Alexander; Kappas, Ilias; Abatzopoulos, Theodore J

2009-01-01

Cryptic species are increasingly being recognized in many organisms. In Brachionus rotifers, many morphologically similar yet genetically distinct species/biotypes have been described. A number of Brachionus cryptic species have been recognized among hatchery strains. In this study, we present a simple, one-step genetic method to detect the presence of those Brachionus sp. rotifers that have been found in hatcheries. With the proposed technique, each of the B. plicatilis sensu stricto, B. ibericus, Brachionus sp. Nevada, Brachionus sp. Austria, Brachionus sp. Manjavacas, and Brachionus sp. Cayman species and/or biotypes can be identified with polymerase chain reaction (PCR) analysis. Based on 233 cytochrome c oxidase subunit I sequences, we reviewed all the available cryptic Brachionus sp. genetic polymorphisms, and we designed six nested primers. With these primers, a specific amplicon of distinct size is produced for every one of the involved species/biotypes. Two highly sensitive protocols were developed for using the primers. Many of the primers can be combined in the same PCR. The proposed method has been found to be an effective and practical tool to investigate the presence of the above six cryptic species/biotypes in both individual and communal (bulk) rotifer deoxyribonucleic acid extractions from hatcheries. With this technique, hatchery managers could easily determine their rotifer composition at the level of cryptic species and monitor their cultures more efficiently.

Evidence for size-selective mortality after the first summer of ocean growth by pink salmon

USGS Publications Warehouse

Moss, J.H.; Beauchamp, D.A.; Cross, A.D.; Myers, K.W.; Farley, Edward V.; Murphy, J.M.; Helle, J.H.

2005-01-01

Pink salmon Onchorhynchus gorbuscha with identifiable thermal otolith marks from Prince William Sound hatchery release groups during 2001 were used to test the hypothesis that faster-growing fish during their first summer in the ocean had higher survival rates than slower-growing fish. Marked juvenile pink salmon were sampled monthly in Prince William Sound and the Gulf of Alaska, and adults that survived to maturity were recovered at hatchery release sites the following year. Surviving fish exhibited significantly wider circuli spacing on the region of the scale formed during early marine residence than did juveniles collected at sea during their first ocean summer, indicating that marine survival after the first growing season was related to increases in early marine growth. At the same circuli, a significantly larger average scale radius for returning adults than for juveniles from the same hatchery would suggest that larger, faster-growing juveniles had a higher survival rate and that significant size-selective mortality occurred after the juveniles were sampled. Growth patterns inferred from intercirculi spacing on scales varied among hatchery release groups, suggesting that density-dependent processes differed among release groups and occurred across Prince William Sound and the coastal Gulf of Alaska. These observations support other studies that have found that larger, faster-growing fish are more likely to survive until maturity. ?? Copyright by the American Fisheries Society 2005.

Comparison of fatty acids and lipids of smolting hatchery-fed and wild Atlantic salmon Salmo salar.

PubMed

Ackman, R G; Takeuchi, T

1986-02-01

In Atlantic Canada the Atlantic salmon Salmo salar change from the parr stage to the smolt stage while still in fresh water, preparatory to migration to salt water. In some stocks this takes place during the second overwintering. In several hatcheries where the water temperature drops to 0-0.5 C and the ponds ice over, there is a high incidence of erosion of the dorsal and pectoral fins and sometimes of the caudal fin. No disease organism has been identified, and the lesions heal over in most cases. Dietary fatty acids were thought to be a factor. A detailed study of lipid recoveries and classes has shown that in the skins of abnormal fish the total lipid is 7.8% compared to 4.7% in control fish. Unexpectedly, an analysis of one lot of healthy smoltstage wild fish showed that whole bodies have only a quarter of the lipid of comparable hatchery fish. Comparison of fatty acids showed that wild fish lipids include a higher proportion of arachidonic acid than those of the hatchery fish. In the latter, linoleic acid is provided readily by diet but the elongation to arachidonic acid evidently does not proceed. These results suggest that the smolt lipid is involved intimately with either the cause of the dermal lesion or is a defense mechanism, possibly mediated through oxygenase activity.

Evaluation of the Contribution of Fall Chinook Salmon Reared at Columbia River Hatcheries to the Pacific Salmon Fisheries, 1989 Final Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vreeland, Robert R.

1989-10-01

In 1979 this study was initiated to determine the distribution, contribution, and value of artificially propagated fall chinook salmon from the Columbia River. Coded wire tagging (CWT) of hatchery fall chinook salmon began in 1979 with the 1978 brood and was completed in 1982 with the 1981 brood of fish at rearing facilities on the Columbia River system. From 18 to 20 rearing facilities were involved in the study each brood year. Nearly 14 million tagged fish, about 4% of the production, were released as part of this study over the four years, 1979 through 1982. Sampling for recoveries ofmore » these tagged fish occurred from 1980 through 1986 in the sport and commercial marine fisheries from Alaska through California, Columbia River fisheries, and returns to hatcheries and adjacent streams. The National Marine Fisheries Service coordinated this study among three fishery agencies: US Fish and Wildfire Service, Oregon Department of Fish and Wildlife, and Washington Department of Fisheries. The objectives of this study were to determine the distribution, fishery contribution, survival, and value of the production of fall chinook salmon from each rearing facility on the Columbia River system to Pacific coast salmon fisheries. To achieve these objectives fish from each hatchery were given a distinctive CWT. 81 refs., 20 figs., 68 tabs.« less

Growth, food consumption, and energy status of juvenile pallid sturgeon fed natural or artificial diets

USGS Publications Warehouse

Meyer, Hilary A.; Chipps, Steven R.; Graeb, Brian D. S.; Klumb, Robert A.

2016-01-01

Stocking of hatchery-raised fish is an important part of the pallid sturgeon Scaphirhynchus albus recovery program. In the wild, juvenile pallid sturgeon consume primarily aquatic insects, although little is known about specific dietary needs. In hatchery settings, pallid sturgeon are fed commercial diets that are formulated for salmonids. To compare food consumption, growth, and energy status of pallid sturgeon fed artificial or natural diets, we conducted a laboratory study using 24 juvenile pallid sturgeon (initial fork length 153–236 mm). Pallid sturgeon were fed a daily ration of either commercial pellets (1 mm, slow sinking; 45% protein, 19% fat) or chironomid larvae for 5 wk. Natural-fed pallid sturgeon exhibited a greater specific growth rate (2.12% d−1) than pellet-fed fish (0.06% d−1). Similarly, relative condition was greater for natural-fed sturgeon (Kn = 1.11) than that observed for pellet-fed fish (Kn = 0.87). In contrast, the hepatosomatic index was significantly higher in pellet-fed fish (2.5%), indicating a high lipid diet compared with natural-fed sturgeon (1.4%). Given the importance of natural diets to fish digestion and growth, it is suggested that a more holistic approach be applied in the development of a practical diet for pallid sturgeon that incorporates attributes of natural prey.

Ecology of the Lake Huron fish community, 1970-1999

USGS Publications Warehouse

Dobiesz, Norine E.; McLeish, David A.; Eshenroder, Randy L.; Bence, James R.; Mohr, Lloyd C.; Ebener, Mark P.; Nalepa, Thomas F.; Woldt, Aaron P.; Johnson, James E.; Argyle, Ray L.; Makarewicz, Joseph C.

2005-01-01

We review the status of the Lake Huron fish community between 1970 and 1999 and explore the effects of key stressors. Offshore waters changed little in terms of nutrient enrichment, while phosphorus levels declined in inner Saginaw Bay. Introduced mussels (Dreissena spp.) proliferated and may have caused a decline in Diporeia spp. This introduction could have caused a decline in lake whitefish (Coregonus clupeaformis) growth and condition, with serious repercussions for commercial fisheries. Bythotrephes, an exotic predatory cladoceran, and other new exotics may be influencing the fish community. Sea lampreys (Petromyzon marinus) remained prevalent, but intensive control efforts on the St. Mary's River may reduce their predation on salmonines. Overfishing was less of a problem than in the past, although fishing continued to reduce the amount of lake trout (Salvelinus namaycush) spawning biomass resulting from hatchery-reared fish planted to rehabilitate this species. Massive stocking programs have increased the abundance of top predators, but lake trout were rehabilitated in only one area. Successful lake trout rehabilitation may require lower densities of introduced pelagic prey fish than were seen in the 1990s, along with continued stocking of hatchery-reared lake trout and control of sea lamprey. Such reductions in prey fish could limit Pacific salmon (Oncorhynchus spp.) fisheries.

Monitoring and Evaluation of Yearling Fall Chinook Salmon (Oncorhynchus tshawytscha) Released from Acclimation Facilities Upstream of Lower Granite Dam; 2000 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rocklage, Stephen J.; Kellar, Dale S.

2005-07-01

The Nez Perce Tribe, in cooperation with the U.S. Fish and Wildlife Service and Washington Department of Fish and Wildlife, conducted monitoring and evaluation studies on Lyons Ferry Hatchery reared yearling fall Chinook salmon Oncorhynchus tshawytscha that were acclimated and released at three Fall Chinook Acclimation Project sites upstream of Lower Granite Dam along with yearlings released on-station from Lyons Ferry Hatchery in 2000. This was the fifth year of a long-term project to supplement natural spawning populations of Snake River stock fall Chinook salmon upstream of Lower Granite Dam. The 397,339 yearlings released from the Fall Chinook Acclimation Projectmore » facilities were short of the 450,000 fish quota. We use Passive Integrated Transponder (PIT) tag technology to monitor the primary performance measures of survival to mainstem dams and migration timing. We also monitor size, condition and tag/mark retention at release. We released 7,477 PIT tagged yearlings from Pittsburg Landing, 7,421 from Big Canyon and 2,488 from Captain John Rapids. The Washington Department of Fish and Wildlife released 980 PIT tagged yearlings from Lyons Ferry Hatchery. Fish health sampling indicated that, overall, bacterial kidney disease levels could be considered relatively low. Compared to prior years, Quantitative Health Assessment Indices were relatively low at Big Canyon and Captain John Rapids and about average at Pittsburg Landing and Lyons Ferry Hatchery. Mean fork lengths (95% confidence interval) of the PIT tagged groups ranged from 157.7 mm (157.3-158.1 mm) at Big Canyon to 172.9 mm (172.2-173.6 mm) at Captain John Rapids. Mean condition factors ranged from 1.06 at Captain John Rapids and Lyons Ferry Hatchery to 1.12 at Big Canyon. Estimated survival (95% confidence interval) of PIT tagged yearlings from release to Lower Granite Dam ranged from 87.0% (84.7-89.4%) for Pittsburg Landing to 95.2% (91.5-98.9%) for Captain John Rapids. Estimated survival from release to McNary Dam ranged from 65.8% (58.5-73.1%) for Lyons Ferry Hatchery to 84.0% (76.2-91.8%) for Captain John Rapids. Median migration rates to Lower Granite Dam, based on all observations of PIT tagged yearlings from the FCAP facilities, ranged from 10.1 river kilometers per day (rkm/d) for Captain John Rapids to 19.1 rkm/d for Pittsburg Landing. Median migration rates to McNary Dam ranged from 6.0 rkm/d for Lyons Ferry Hatchery to 17.3 rkm/d for Pittsburg Landing. Median travel times from the FCAP facilities were about 9-10 days to Lower Granite Dam and 22-25 days to McNary Dam. Median arrival dates at Lower Granite Dam, based on all observations of PIT tagged yearling groups from Pittsburg Landing, Big Canyon and Captain John Rapids, were all from April 21-22. Median arrival dates at McNary Dam for Pittsburg Landing, Big Canyon and Captain John Rapids groups were all from May 5-6. The median arrival date at McNary Dam was April 24 for Lyons Ferry Hatchery yearlings.« less

Steelhead Supplementation in Idaho Rivers : 2001 Project Progress Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Byrne, Alan

In 2001, Idaho Department of Fish and Game (IDFG) continued an assessment of the Sawtooth Hatchery steelhead Oncorhynchus mykiss stock to reestablish natural populations in Beaver and Frenchman creeks in the upper Salmon River. Crews stocked both streams with 20 pair of hatchery adults, and I estimated the potential smolt production from the 2000 adult outplants. n the Red River drainage, IDFG stocked Dworshak hatchery stock fingerlings and smolts from 1993 to 1999 to assess which life stage produces more progeny when the adults return to spawn. In 2001, IDFG operated the Red River weir to trap adults that returnedmore » from these stockings, but none were caught from either group. Wild steelhead populations in the Lochsa and Selway river drainages were assessed and the chinook salmon Oncorhynchus tshawytscha escapement was enumerated in Fish Creek. I estimated that 75 wild adult steelhead and 122 adult chinook salmon returned to Fish Creek in 2001. I estimated that slightly more than 30,000 juvenile steelhead migrated out of Fish Creek. This is the largest number of steelhead to migrate out of Fish Creek in a single year since I began estimating the yearly migration in 1994. Juvenile steelhead densities in Lochsa and Selway tributaries were somewhat higher in 2001 than those observed in 2000. Crews from IDFG collected over 4,800 fin samples from wild steelhead in 74 streams of the Clearwater, Snake, and Salmon river drainages and from five hatchery stocks during the summer of 2000 for a DNA analysis to assess Idaho's steelhead stock structure. The DNA analysis was subcontracted to Dr. Jennifer Nielsen, Alaska Biological Science Center, Anchorage. Her lab developed protocols to use for the analysis in 2001 and is continuing to analyze the samples. Dr. Nielsen plans to have the complete set of wild and hatchery stocks analyzed in 2002.« less

Trials for the control of trichodinosis and gyrodactylosis in hatchery reared Oreochromis niloticus fries by using garlic.

PubMed

Abd El-Galil, Mohamed A A; Aboelhadid, Shawky M

2012-04-30

The present work was designed to study the prevalence of trichodinosis and gyrodactylosis in Oreochromis niloticus fries, and to test the therapeutic efficacy and preventive efficacy of garlic oil and crushed garlic cloves. Trichodinosis and gyrodactylosis are ectoparasitic diseases that affect most warm freshwater fish, especially fries and fingerlings. In a private O. niloticus fish hatchery, the prevalence of trichodinosis in 5-, 15- and 30-day-old-fries was 37%, 23% and 40.5%, respectively. The highest infection intensity was detected in 30-day-old-fries. The gyrodactylosis was reported only in combination with trichodinosis. In addition, we found that its prevalence in 5-, 15- and 30-day-old-fries was 17%, 19.5% and 29%, respectively. Mortality rate of fry in the first month of life was 53% as a result of injury to these two types of parasites. The garlic oil and crushed garlic cloves were tested in both in vitro and earthen ponds of the hatchery. Using 2-, 2.5- and 3-ppt (parts per thousand) garlic oil for 4h in vitro water bath treatment resulted in 100% recovery, while 1 and 1.5 ppt garlic oil, respectively, needed 24 and 16 h to treat the infected fries. The treatment by 3 ppt garlic oil as a water bath for 1h treated the two diseases in 55% in 7 days from application in the hatchery earthen pond. In the mean time, 300 mg L(-1) crushed garlic cloves as an indefinite bath in the hatchery earthen pond eliminated 68% of the diseases. The same protocol for preventing the two diseases resulted in obtaining 65% and 75% of parasite free fries, for garlic oil and crushed garlic cloves, respectively, compared to 53% of the control fries. Crown Copyright © 2011. Published by Elsevier B.V. All rights reserved.

Comparative evaluation of molecular diagnostic tests for Nucleospora salmonis and prevalence in migrating juvenile salmonids from the Snake River, USA

USGS Publications Warehouse

Badil, Samantha; Elliott, Diane G.; Kurobe, Tomofumi; Hedrick, Ronald P.; Clemens, Kathy; Blair, Marilyn; Purcell, Maureen K.

2011-01-01

Nucleospora salmonis is an intranuclear microsporidian that primarily infects lymphoblast cells and contributes to chronic lymphoblastosis and a leukemia-like condition in a range of salmonid species. The primary goal of this study was to evaluate the prevalence of N. salmonis in out-migrating juvenile hatchery and wild Chinook salmon Oncorhynchus tshawytscha and steelhead O. mykiss from the Snake River in the U.S. Pacific Northwest. To achieve this goal, we first addressed the following concerns about current molecular diagnostic tests for N. salmonis: (1) nonspecific amplification patterns by the published nested polymerase chain reaction (nPCR) test, (2) incomplete validation of the published quantitative PCR (qPCR) test, and (3) whether N. salmonis can be detected reliably from nonlethal samples. Here, we present an optimized nPCR protocol that eliminates nonspecific amplification. During validation of the published qPCR test, our laboratory developed a second qPCR test that targeted a different gene sequence and used different probe chemistry for comparison purposes. We simultaneously evaluated the two different qPCR tests for N. salmonis and found that both assays were highly specific, sensitive, and repeatable. The nPCR and qPCR tests had good overall concordance when DNA samples derived from both apparently healthy and clinically diseased hatchery rainbow trout were tested. Finally, we demonstrated that gill snips were a suitable tissue for nonlethal detection of N. salmonis DNA in juvenile salmonids. Monitoring of juvenile salmonid fish in the Snake River over a 3-year period revealed low prevalence of N. salmonis in hatchery and wild Chinook salmon and wild steelhead but significantly higher prevalence in hatchery-derived steelhead. Routine monitoring of N. salmonis is not performed for all hatchery steelhead populations. At present, the possible contribution of this pathogen to delayed mortality of steelhead has not been determined.

Abundance, stock origin, and length of marked and unmarked juvenile Chinook salmon in the surface waters of greater Puget Sound

USGS Publications Warehouse

Rice, C.A.; Greene, C.M.; Moran, P.; Teel, D.J.; Kuligowski, D.R.; Reisenbichler, R.R.; Beamer, E.M.; Karr, J.R.; Fresh, K.L.

2011-01-01

This study focuses on the use by juvenile Chinook salmon Oncorhynchus tshawytscha of the rarely studied neritic environment (surface waters overlaying the sublittoral zone) in greater Puget Sound. Juvenile Chinook salmon inhabit the sound from their late estuarine residence and early marine transition to their first year at sea. We measured the density, origin, and size of marked (known hatchery) and unmarked (majority naturally spawned) juveniles by means of monthly surface trawls at six river mouth estuaries in Puget Sound and the areas in between. Juvenile Chinook salmon were present in all months sampled (April-November). Unmarked fish in the northern portion of the study area showed broader seasonal distributions of density than did either marked fish in all areas or unmarked fish in the central and southern portions of the sound. Despite these temporal differences, the densities of marked fish appeared to drive most of the total density estimates across space and time. Genetic analysis and coded wire tag data provided us with documented individuals from at least 16 source populations and indicated that movement patterns and apparent residence time were, in part, a function of natal location and time passed since the release of these fish from hatcheries. Unmarked fish tended to be smaller than marked fish and had broader length frequency distributions. The lengths of unmarked fish were negatively related to the density of both marked and unmarked Chinook salmon, but those of marked fish were not. These results indicate more extensive use of estuarine environments by wild than by hatchery juvenile Chinook salmon as well as differential use (e.g., rearing and migration) of various geographic regions of greater Puget Sound by juvenile Chinook salmon in general. In addition, the results for hatchery-generated timing, density, and length differences have implications for the biological interactions between hatchery and wild fish throughout Puget Sound. ?? American Fisheries Society 2011.

Reintroduction of Lower Columbia River Chum Salmon into Duncan Creek, 2007 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hillson, Todd D.

2009-06-12

The National Marine Fisheries Service (NMFS) listed Lower Columbia River (LCR) chum salmon as threatened under the Endangered Species Act (ESA) in March, 1999 (64 FR 14508, March 25, 1999). The listing was in response to the reduction in abundance from historical levels of more than one-half million returning adults to fewer than 10,000 present-day spawners. Harvest, habitat degradation, changes in flow regimes, riverbed movement and heavy siltation have been largely responsible for this decline. The timing of seasonal changes in river flow and water temperatures is perhaps the most critical factor in structuring the freshwater life history of thismore » species. This is especially true of the population located directly below Bonneville Dam, where hydropower operations can block access to spawning sites, dewater redds, strand fry, cause scour or fill of redds and increase sedimentation of spawning gravels. Prior to 1997, only two chum salmon populations were recognized as genetically distinct in the Columbia River, although spawning had been documented in many Lower Columbia River tributaries. The first population was in the Grays River (RKm 34), a tributary of the Columbia River, and the second was a group of spawners utilizing the mainstem Columbia River just below Bonneville Dam (RKm 235) adjacent to Ives Island and in Hardy and Hamilton creeks. Using additional DNA samples, Small et al. (2006) grouped chum salmon spawning in the mainstem Columbia River and the Washington State tributaries into three groups: the Coastal, the Cascade and the Gorge. The Coastal group comprises those spawning in the Grays River, Skamokawa Creek and the broodstock used at the Sea Resources facility on the Chinook River. The Cascade group comprises those spawning in the Cowlitz (both summer and fall stocks), Kalama, Lewis, and East Fork Lewis rivers, with most supporting unique populations. The Gorge group comprises those spawning in the mainstem Columbia River from the I-205 Bridge up to Bonneville Dam and those spawning in Hamilton and Hardy creeks. Response to the federal ESA listing has been primarily through direct-recovery actions: reducing harvest, hatchery supplementation using local broodstock for populations at catastrophic risk, habitat restoration (including construction of spawning channels) and flow agreements to protect spawning and rearing areas. Both state and federal agencies have built controlled spawning areas. In 1998, the Washington Department of Fish and Wildlife (WDFW) began a chum salmon supplementation program using native stock on the Grays River. This program was expanded during 1999 - 2001 to include reintroduction into the Chinook River using eggs from the Grays River Supplementation Program. These eggs are incubated at the Grays River Hatchery, reared to release size at the Sea Resources Hatchery on the Chinook River, and the fry are released at the mouth of the Chinook River. Native steelhead, chum, and coho salmon are present in Duncan Creek, and are recognized as subpopulations of the Lower Gorge population, and are focal species in the Lower Columbia Fish Recovery Board (LCFRB) plan. Steelhead, chum and coho salmon that spawn in Duncan Creek are listed as Threatened under the ESA. Duncan Creek is classified by the LCFRB plan as a watershed for intensive monitoring (LCFRB 2004). This project was identified in the 2004 Federal Columbia River Power System (FCRPS) revised Biological Opinion (revised BiOp) to increase survival of chum salmon, 'BPA will continue to fund the program to re-introduce Columbia River chum salmon into Duncan Creek as long as NOAA Fisheries determines it to be an essential and effective contribution to reducing the risk of extinction for this ESU'. (USACE et al. 2004, page 85-86). The Governors Forum on Monitoring and Salmon Recovery and Watershed Health recommends one major population from each ESU have adult and juvenile monitoring. Duncan Creek chum salmon are identified in this plan to be intensively monitored. Planners recommended that a combination of natural and hatchery production would be the most likely way to produce the most rapid sustainable improvement in chum runs. Specifically, it was assumed that improving habitat conditions would promote efficient natural production, and that the most rapid way to rebuild the run would be to combine releases of an appropriate stock into the improved habitat. WDFW's recovery strategy for LCR chum salmon, as outlined in the WDFW Grays River and Washougal Hatchery Genetic Management Plans (HGMP), is as follows. First, determine if remnant populations of chum salmon exist in LCR tributaries. Second, if such populations exist, develop stock-specific recovery plans involving habitat restoration that include the creation of spawning refugias, supplementation where necessary, and a habitat and fish monitoring and evaluation plan.« less

Annual Coded Wire Tag Program; Oregon Missing Production Groups, 1996 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lewis, Mark A.; Mallette, Christine; Murray, William M.

1998-03-01

This annual report is in fulfillment of contract obligations with Bonneville Power Administration which is the funding source for the Oregon Department of Fish and Wildlife's Annual Coded Wire Tag Program - Oregon Missing Production Groups Project. Tule stock fall chinook were caught primarily in British Columbia and Washington ocean, and Oregon freshwater fisheries. Up-river bright stock fall chinook contributed primarily to Alaska and British Columbia ocean commercial, and Columbia River gillnet and other freshwater fisheries. Contribution of Rogue stock fall chinook released in the lower Columbia River occurred primarily in Oregon ocean commercial and Columbia river gillnet fisheries. Willamettemore » stock spring chinook contributed primarily to Alaska and British Columbia ocean commercial, Oregon freshwater sport and Columbia River gillnet fisheries. Willamette stock spring chinook released by CEDC contributed to similar fisheries as the same stocks released in the Willamette system. Up-river stocks of spring chinook contributed almost exclusively to Columbia River sport fisheries and other freshwater recovery areas. The up-river stocks of Columbia River summer steelhead contributed primarily to the Columbia River gillnet and other freshwater fisheries. Coho ocean fisheries from Washington to California were closed or very limited in 1994 and 1995 (1991 and 1992 broods). This has resulted in a greater average percent of catch for other fishery areas. Coho stocks released by ODFW below Bonneville Dam contributed mainly to Oregon and Washington ocean, Columbia Gillnet and other freshwater fisheries. Coho stocks released in the Klaskanine River and Youngs Bay area had much higher contribution to gillnet fisheries than the other coho releases. Coho stocks released above Bonneville Dam contributed to the same fisheries as those released below Bonneville Dam. Survival rates of salmon and steelhead are influenced, not only by factors in the hatchery (disease, density, diet, size and time of release) but also by environmental factors in the river and ocean. These environmental factors are controlled by large scale weather patterns such as El Nino over which man has no influence. Changes in rearing conditions in the hatchery, over which man has some influence, do impact the survival rates. However, these impacts can be offset by impacts caused by environmental factors. Brood years of salmon and steelhead that were in the ocean during the 1983 El Nino event exhibited poor survival all along the Pacific coast of California, Oregon, and Washington. However, stocks of chinook and coho that entered the ocean in the fall of 1984 following the El Nino experienced remarkably improved survival rates. In some instances, tule fall chinook experienced survival rates almost ten times higher than for the previous brood years of the same stock. Coho salmon released in the Columbia River generally experience better survival rates when released later in the spring. However, for the 1990 brood year June releases of Columbia River coho had much lower survival than May releases, for all ODFW hatcheries. In general survival of ODFW Columbia River hatchery coho has declined to low levels since the 1989 brood year.« less

Fish Passage Center; Columbia Basin Fish and Wildlife Authority, 2000 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

DeHart, Michele

2001-06-01

The year 2000 hydrosystem operations illustrated two main points: (1) that the NMFS Biological Opinion on the operations of the Federal Columbia River Power System (FCRPS) fish migration measures could not be met in a slightly below average water year, and; (2) the impacts and relationships of energy deregulation and volatile wholesale energy prices on the ability of the FCRPS to provide the Biological Opinion fish migration measures. In 2000, a slightly below average water year, the flow targets were not met and, when energy ''emergencies'' were declared, salmon protection measures were reduced. The 2000 migration year was a belowmore » average runoff volume year with an actual run off volume of 61.1 MAF or 96% of average. This year illustrated the ability of the hydro system to meet the migration protection measures established by the NMFS Biological Opinion. The winter operation of storage reservoirs was based upon inaccurate runoff volume forecasts which predicted a January-July runoff volume forecast at The Dalles of 102 to 105% of average, from January through June. Reservoir flood control drafts during the winter months occurred according to these forecasts. This caused an over-draft of reservoirs that resulted in less volume of water available for fish flow augmentation in the spring and the summer. The season Biological Opinion flow targets for spring and summer migrants at Lower Granite and McNary dams were not met. Several power emergencies were declared by BPA in the summer of 2000. The first in June was caused by loss of resources (WNP2 went off-line). The second and third emergencies were declared in August as a result of power emergencies in California and in the Northwest. The unanticipated effects of energy deregulation, power market volatility and rising wholesale electricity prices, and Californian energy deregulation reduced the ability of the FCRPS to implement fish protection measures. A Spill Plan Agreement was implemented in the FCRPS. Under this plan, spill hours were increased at Lower Monumental Dam. Spill volume at The Dalles was reduced and daytime spill tests were conducted at John Day and Bonneville Dams. Although provided for fish, most spill that occurred in 2000 was either in excess of project hydraulic capacity or excess generation. This effectively reduced the actual cost of the spill program. For the most part, spill in 2000 was managed to the waiver limits for total dissolved gas levels and the NMFS action criteria for dissolved gas signs were not exceeded. Hatchery spring chinook returns comprised an estimated 81.4% of the total spring chinook adult return to Lower Granite Dam. Smolt travel time and survival were similar to past years for most Smolt Monitoring Program groups. The notable exceptions were Snake River hatchery steelhead groups and mid-Columbia hatchery sub-yearling groups from Wells and Ringold hatcheries, which had significantly lower survival than previous years. Yearling chinook travel time showed variation from past years, reflecting the atypical flow shape in 2000 which had high flows in April, declining through May.« less

Pen rearing and imprinting of fall Chinook salmon

USGS Publications Warehouse

Beeman, J.W.; Novotny, J.F.

1994-01-01

Results of rearing upriver bright fall chinook salmon juveniles in net pens and a barrier net enclosure in two backwater areas and a pond along the Columbia River were compared with traditional hatchery methods. Growth, smoltification, and general condition of pen-reared fish receiving supplemental feeding were better than those of fish reared using traditional methods. Juvenile fish receiving no supplemental feeding were generally in poor condition resulting in a net loss of production. Rearing costs using pens were generally lower than in the hatchery. However, low adult returns resulted in greater cost per adult recovery than fish reared and released using traditional methods. Much of the differences in recovery rates may have been due to differences in rearing locations, as study sites were as much as 128 mi upstream from the hatcheries and study fish may have incurred higher mortality associated with downstream migration than control fish. Fish reared using these methods could be a cost-effective method of enhancing salmon production in the Columbia River Basin.

Role of shellfish hatchery as a reservoir of antimicrobial resistant bacteria.

PubMed

Miranda, Claudio D; Rojas, Rodrigo; Garrido, Marcela; Geisse, Julieta; González, Gerardo

2013-09-15

The main aim of this study was to determine the occurrence of resistant bacteria in florfenicol-treated and untreated scallop larval cultures from a commercial hatchery and to characterize some selected florfenicol-resistant strains. Larval cultures from untreated and treated rearing tanks exhibited percentages of copiotrophic bacteria resistant to florfenicol ranging from 0.03% to 10.67% and 0.49-18.34%, respectively, whereas florfenicol resistance among oligotrophic bacteria varied from 1.44% to 35.50% and 3.62-95.71%, from untreated and treated larvae, respectively. Florfenicol resistant microbiota from reared scallop larvae mainly belonged to the Pseudomonas and Pseudoalteromonas genus and were mainly resistant to florfenicol, chloramphenicol, streptomycin and co-trimoxazole. This is the first study reporting antimicrobial resistant bacteria associated to a shellfish hatchery and the results suggest that a continuous surveillance of antimicrobial resistance even in absence of antibacterial therapy is urgently required to evaluate potential undesirable consequences on the surrounding environments. Copyright © 2013 Elsevier Ltd. All rights reserved.

New Insights into Pathogenic Vibrios Affecting Bivalves in Hatcheries: Present and Future Prospects

PubMed Central

Dubert, Javier; Barja, Juan L.; Romalde, Jesús L.

2017-01-01

Hatcheries constitute nowadays the only viable solution to support the husbandry of bivalve molluscs due to the depletion and/or overexploitation of their natural beds. Hatchery activities include the broodstock conditioning and spawning, rearing larvae and spat, and the production of microalgae to feed all stages of the production cycle. However, outbreaks of disease continue to be the main bottleneck for successful larval and spat production, most of them caused by different representatives of the genus Vibrio. Therefore, attention must be paid on preventive and management measures that allow the control of such undesirable bacterial populations. The present review provides an updated picture of the recently characterized Vibrio species associated with disease of bivalve molluscs during early stages of development, including the controversial taxonomic affiliation of some of them and relevant advances in the knowledge of their virulence determinants. The problematic use of antibiotics, as well as its eco-friendly alternatives are also critically discussed. PMID:28515714

Involvement of hormones in olfactory imprinting and homing in chum salmon.

PubMed

Ueda, Hiroshi; Nakamura, Shingo; Nakamura, Taro; Inada, Kaoru; Okubo, Takashi; Furukawa, Naohiro; Murakami, Reiichi; Tsuchida, Shigeo; Zohar, Yonathan; Konno, Kotaro; Watanabe, Masahiko

2016-02-16

The olfactory hypothesis for salmon imprinting and homing to their natal stream is well known, but the endocrine hormonal control mechanisms of olfactory memory formation in juveniles and retrieval in adults remain unclear. In brains of hatchery-reared underyearling juvenile chum salmon (Oncorhynchus keta), thyrotropin-releasing hormone gene expression increased immediately after release from a hatchery into the natal stream, and the expression of the essential NR1 subunit of the N-methyl-D-aspartate receptor increased during downstream migration. Gene expression of salmon gonadotropin-releasing hormone (sGnRH) and NR1 increased in the adult chum salmon brain during homing from the Bering Sea to the natal hatchery. Thyroid hormone treatment in juveniles enhanced NR1 gene activation, and GnRHa treatment in adults improved stream odour discrimination. Olfactory memory formation during juvenile downstream migration and retrieval during adult homing migration of chum salmon might be controlled by endocrine hormones and could be clarified using NR1 as a molecular marker.

The protozoan diseases of hatchery fish

USGS Publications Warehouse

Fish, F.F.

1935-01-01

Following the somewhat bleak picture painted in the consideration of the bacterial diseases of hatchery fish in the last number of The Progressive Fish Culturist, it is a relief to turn to another large group of fish diseases caused by small, single-celled parasitic animals known as the protozoa. To the hatcheryman, the protozoan diseases of fish are just as important as the bacterial diseases for they are equally destructive if allowed to run unchecked. The protozoan diseases are just as common as those caused by bacteria, particularly at those hatcheries which depend upon lakes or streams for their water supplies. However, a very cheery point of difference exists between these two groups of diseases—the protozoan diseases are easier to recognize and, for the most part, they are exceedingly easy to eradicate. To the hatcheryman who has struggled day and night for weeks in an attempt to combat an epidemic wherein he is rewarded immediately by the satisfying sight of a complete recovery of his infected fish as the direct result of his labors.

Summary of survival data from juvenile coho salmon in the Klamath River, northern California, 2009

USGS Publications Warehouse

Beeman, John W.; Juhnke, Steven D.

2009-01-01

A study of the effects of the discharge from Iron Gate Dam on the Klamath River on juvenile coho salmon during their seaward migration began in 2005. Estimates of fish survival through various reaches of the river downstream of the dam were completed in 2006, 2007, 2008, and 2009. This report describes the estimates of survival during 2009, and is a complement to similar reports for 2006, 2007, and 2008. For each year, a series of numerical models were evaluated to determine apparent survival and recapture probabilities of radio-tagged fish in several river reaches between Iron Gate Hatchery at river kilometer 309 and a site at river kilometer 33. The evaluations indicate that the primary differences among years are in the survivals through reaches upstream of the confluence of the Scott River with the Klamath River. Data from 2009, one of two years when fish from both hatchery and wild origins were available for analysis, indicate that survival of wild and hatchery fish are similar.

Limestone fluidized bed treatment of acid-impacted water at the Craig Brook National Fish Hatchery, Maine, USA

USGS Publications Warehouse

Sibrell, P.L.; Watten, B.J.; Haines, T.A.; Spaulding, B.W.

2006-01-01

Decades of atmospheric acid deposition have resulted in widespread lake and river acidification in the northeastern U.S. Biological effects of acidification include increased mortality of sensitive aquatic species such as the endangered Atlantic salmon (Salmo salar). The purpose of this paper is to describe the development of a limestone-based fluidized bed system for the treatment of acid-impacted waters. The treatment system was tested at the Craig Brook National Fish Hatchery in East Orland, Maine over a period of 3 years. The product water from the treatment system was diluted with hatchery water to prepare water supplies with three different levels of alkalinity for testing of fish health and survival. Based on positive results from a prototype system used in the first year of the study, a larger demonstration system was used in the second and third years with the objective of decreasing operating costs. Carbon dioxide was used to accelerate limestone dissolution, and was the major factor in system performance, as evidenced by the model result: Alk = 72.84 ?? P(CO2)1/2; R2 = 0.975. No significant acidic incursions were noted for the control water over the course of the study. Had these incursions occurred, survivability in the untreated water would likely have been much more severely impacted. Treated water consistently provided elevated alkalinity and pH above that of the hatchery source water. ?? 2005 Elsevier B.V. All rights reserved.

Exploring life history characteristics of naturalized versus stocked chinook

USGS Publications Warehouse

Rogers, Mark W.; Kerns, Janice A; Bunnell, David B.; Claramunt, Randall M.; Collingsworth, Paris D.

2011-01-01

Naturalization of stocked populations can result in divergence of life-history traits from domestic stocks. Lake Michigan supports popular Chinook (Oncorhynchus tshawytscha) Salmon fisheries that have been sustained by stocking since the late 1960s. Natural recruitment of Chinook Salmon in Lake Michigan has increased in the last few decades and currently contributes over 50% of Chinook Salmon recruits. Samples collected as part of a lakewide mass-marking of Lake Michigan Chinook Salmon, starting with the 2006 year class, indicated hatchery fish average 30-mm longer and 130 grams heavier than naturalized fish at age-1. We hypothesized that selective forces differ for naturalized and hatchery populations resulting in divergent life-history characteristics with implications for Chinook Salmon population production and the Lake Michigan fishery. Specific life-history metrics of interest include: age- and size- at maturity, spawning run timing, fecundity, and sex ratio. Objectives: We evaluated life history characteristics between naturally recruited and stocked Chinook Salmon in Lake Michigan to help discern potential changes resulting from naturalization and implications for fisheries. A. Conduct an analysis of historical data to determine if life-history parameters changed through time as the Chinook Salmon population became increasingly naturalized. B. Conduct a two-year field study of naturalized and hatchery stocked Chinook Salmon spawning populations to quantify differences in life-history metrics of adults. C. Determine if reproductive potential differs between naturalized and hatchery stocked Chinook salmon by measuring egg thiamine levels.

Novel alternative to antibiotics in shrimp hatchery: effects of the essential oil of Cinnamosma fragrans on survival and bacterial concentration of Penaeus monodon larvae.

PubMed

Randrianarivelo, R; Danthu, P; Benoit, C; Ruez, P; Raherimandimby, M; Sarter, S

2010-08-01

The activity of two essential oils (EOs) of Cinnamosma fragrans, an endemic plant to Madagascar (B8: linalool-type and B143: 1,8-cineole-type), against bacterial isolates from a shrimp hatchery of Penaeus monodon and their effects on the survival and bacterial concentration of larvae were determined. Minimum inhibitory concentrations were determined using a broth dilution technique. The bacterial concentrations of both larvae and water tank were assessed on Marine agar and Thiosulfate Citrate Bile Sucrose agar. The assays took place in OSO Farming's shrimp hatchery in Madagascar. EOs were directly added to the water tank. Regarding the survival, the assays in larval culture (four replicates each of B8, B143, E and control) showed that B8 oil had a similar effect (P > 0.05) as the antibiotic (Erythromycin) and was more active than B143 (P < 0.05). A negative correlation was observed between the bacterial concentration and the survival of larvae for all assays. Both C. fragrans essential oils, as antibiotic, exhibited significantly higher survival rates and lower bacterial concentrations of the larvae than the control (oil and antibiotic free). The potential of C. fragrans essential oil to control the bacterial load in in vivo conditions, thereby enhancing survival rate of P. monodon larvae, makes it a relevant option for developing a novel alternative to antibiotics in shrimp hatchery culture.

Fluvial rainbow trout contribute to the colonization of steelhead (Oncorhynchus mykiss) in a small stream

USGS Publications Warehouse

Weigel, Dana E.; Connolly, Patrick J.; Powell, Madison S.

2013-01-01

Life history polymorphisms provide ecological and genetic diversity important to the long term persistence of species responding to stochastic environments. Oncorhynchus mykiss have complex and overlapping life history strategies that are also sympatric with hatchery populations. Passive integrated transponder (PIT) tags and parentage analysis were used to identify the life history, origin (hatchery or wild) and reproductive success of migratory rainbow/steelhead for two brood years after barriers were removed from a small stream. The fluvial rainbow trout provided a source of wild genotypes to the colonizing population boosting the number of successful spawners. Significantly more parr offspring were produced by anadromous parents than expected in brood year 2005, whereas significantly more parr offspring were produced by fluvial parents than expected in brood year 2006. Although hatchery steelhead were prevalent in the Methow Basin, they produced only 2 parr and no returning adults in Beaver Creek. On average, individual wild steelhead produced more parr offspring than the fluvial or hatchery groups. Yet, the offspring that returned as adult steelhead were from parents that produced few parr offspring, indicating that high production of parr offspring may not be related to greater returns of adult offspring. These data in combination with other studies of sympatric life histories of O. mykiss indicate that fluvial rainbow trout are important to the conservation and recovery of steelhead and should be included in the management and recovery efforts.

Management and recovery options for Ural river beluga sturgeon.

PubMed

Doukakis, Phaedra; Babcock, Elizabeth A; Pikitch, Ellen K; Sharov, Alexei R; Baimukhanov, Mirgaly; Erbulekov, Sagiden; Bokova, Yelena; Nimatov, Akhat

2010-06-01

Management of declining fisheries of anadromous species sometimes relies heavily on supplementation of populations with captive breeding, despite evidence that captive breeding can have negative consequences and may not address the root cause of decline. The beluga sturgeon (Huso huso), a species threatened by the market for black caviar and reductions in habitat quality, is managed through harvest control and hatchery supplementation, with an emphasis on the latter. We used yield per recruit and elasticity analyses to evaluate the population status and current levels of fishing and to identify the life-history stages that are the best targets for conservation of beluga of the Ural River. Harvest rates in recent years were four to five times higher than rates that would sustain population abundance. Sustainable rates of fishing mortality are similar to those for other long-lived marine species such as sharks and mammals. Yield per recruit, which is maximized if fish are first harvested at age 31 years, would be greatly enhanced by raising minimum size limits or reducing illegal take of subadults. Improving the survival of subadult and adult females would increase population productivity by 10 times that achieved by improving fecundity and survival from egg to age 1 year (i.e., hatchery supplementation). These results suggest that reducing mortality of subadults and adult wild fish is a more effective conservation strategy than hatchery supplementation. Because genetics is not factored into hatchery management practices, supplementation may even reduce the viability of the beluga sturgeon.

Increased natural reproduction and genetic diversity one generation after cessation of a steelhead trout (Oncorhynchus mykiss) conservation hatchery program.

PubMed

Berejikian, Barry A; Van Doornik, Donald M

2018-01-01

Spatial and temporal fluctuations in productivity and abundance confound assessments of captive propagation programs aimed at recovery of Threatened and Endangered populations. We conducted a 17 year before-after-control-impact experiment to determine the effects of a captive rearing program for anadromous steelhead trout (Oncorhynchus mykiss) on a key indicator of natural spawner abundance (naturally produced nests or 'redds'). The supplemented population exhibited a significant (2.6-fold) increase in redd abundance in the generation following supplementation. Four non-supplemented (control) populations monitored over the same 17 year period exhibited stable or decreasing trends in redd abundance. Expected heterozygosity in the supplemented population increased significantly. Allelic richness increased, but to a lesser (non-significant) degree. Estimates of the effective number of breeders increased from a harmonic mean of 24.4 in the generation before supplementation to 38.9 after supplementation. Several non-conventional aspects of the captive rearing program may have contributed to the positive response in the natural population.

Hood River and Pelton Ladder Evaluation Studies, Annual Report 2000-2001.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Olsen, Erik

The Bonneville Power Administration (BPA) funded the development of two master plans which outline the rationale, and general approach, for implementing a defined group of projects that are an integral part of a comprehensive watershed goal to 'Protect, enhance and restore wild and natural populations of anadromous and resident fish within the Hood River Subbasin'. The Hood River Production Master Plan and the Pelton Ladder Master Plan were completed in 1991 and subsequently approved by the Northwest Power Planning Council in 1992. Action items identified in the two master plans, as well as in a later document entitled 'Hood River/Peltonmore » Ladder Master Agreement' (ODFW and CTWSRO Undated), are designed to achieve two biological fish objectives: (1) to increase production of wild summer and winter steelhead (Oncorhynchus mykiss) to levels commensurate with the subbasins current carrying capacity and (2) re-establishing a self-sustaining population of spring chinook salmon (Oncorhynchus tshawytscha). Numerical fish objectives for subbasin escapement, spawner escapement, and subbasin harvest are defined for each of these species in Coccoli (2000). Several projects are presently funded by the BPA to achieve the Hood River subbasin's numerical fish objectives for summer and winter steelhead and spring chinook salmon. They include BPA project numbers 1998-021-00 (Hood River Fish Habitat), 1998-053-03 (Hood River Production Program - CTWSRO: M&E), 1998-053-07 (Parkdale Fish Facility), 1998-053-08 (Powerdale/Oak Springs O&M), and 1998-053-12 (Hood River Steelhead Genetics Study). Collectively, they are implemented under the umbrella of what has come to be defined as the Hood River Production Program (HRPP). The HRPP is jointly implemented by the Oregon Department of Fish and Wildlife (ODFW) and The Confederated Tribes of the Warm Springs Reservation of Oregon (CTWSRO). Strategies for achieving the HRPP's biological fish objectives for the Hood River subbasin were initially devised based on various assumptions about (1) subbasin carrying capacity, (2) survival rates for selected life history stages, and (3) historic and current escapements of wild, natural, and hatchery stocks of anadromous salmonids to the Hood River subbasin. The Oregon Department of Fish and Wildlife began funding a monitoring and evaluation (M&E) project in December 1991 to collect the quantitative biological information needed to (1) more accurately assess the validity of these assumptions and (2) evaluate the proposed hatchery supplementation component of the HRPP. Bonneville Power Administration assumed funding of the M&E project in August 1992. The M&E project was initially confined to sampling anadromous salmonids escaping to an adult trapping facility operated at Powerdale Dam; which is located at River Mile (RM) 4.5 on the mainstem of the Hood River. Stock specific life history and biological data was collected to (1) monitor subbasin spawner escapements and (2) collect pre-implementation data critical to evaluating the newly proposed HRPP's potential biological impact on indigenous populations of resident fish. The scope of the M&E project was expanded in 1994 to collect the data needed to quantify (1) subbasin smolt production and carrying capacity, (2) smolt to adult survival rates, and (3) the spatial distribution of indigenous populations of summer and winter steelhead, spring and fall chinook salmon, and coho salmon. A creel was incorporated into the M&E project in December 1996 to evaluate the HRPP with respect to its defined subbasin and spawner escapement objectives for Hood River stocks of wild and hatchery summer and winter steelhead and for natural and Deschutes stock hatchery spring chinook salmon. In 1996, the M&E project also began monitoring streamflow at various locations in the Hood River subbasin. Streamflow data will be used to correlate subbasin smolt production with summer streamflows. Data collected from 1991-1999 is reported in the following annual progress reports: Olsen et al. (1994), Olsen et al. (1995), Olsen and French (1996), Olsen et al. (1996), Olsen and French (1999), and Olsen and French (2000). The annual progress reports document information collected on (1) rearing densities of indigenous fish, (2) subbasin steelhead smolt production, (3) post-release survival of acclimated and direct released hatchery summer and winter steelhead smolts, (4) smolt to adult anadromous salmonid survival rates, (5) jack and adult anadromous salmonid escapements and harvest, (6) spatial distribution of adult anadromous salmonid holding in the Hood River subbasin, (7) selected life history patterns and morphological and meristic characteristics of wild, natural, and hatchery resident and anadromous salmonids, and (8) summer streamflows.« less

Fish mycobacteriosis (Tuberculosis)

USGS Publications Warehouse

Parisot, T.J.; Wood, J.W.

1959-01-01

The etiologic agent for the bacterial disease, "fish tuberculosis" (more correctly "mycobacteriosis"), was first observed in carp in 189& from a pond in France. Subsequently similar agents have been isolated from or observed in fish in fresh water, salt water, and brackish water, in fish in aquaria, hatcheries, and natural habitat~ (wild populations of fish). The disease has been recognized as an important infection among hatchery reared salmonid fishes on the West Coast of the United States, and in aquarium fishes such as the neon tetra, the Siamese fighting fish, and in salt water fish held in zoological displays.

Open-jaw syndrome in chinook salmon (Oncorhynchus tshawytscha) at a hatchery

USGS Publications Warehouse

Crouch, Dennis E.; Yasutake, William T.; Rucker, Robert R.

1973-01-01

Nearly 0.5% of the yearling spring chinook salmon (Oncorhynchus tshawytscha) at a national fish hatchery were observed with mouth agape, the condition occurring in two of 16 ponds. X-radiographs and histological preparations indicated that the articular bone of the lower jaw was malformed and dislocated dorsal and posterior to its normal point of attachment. The bone appeared to be embedded in the mandibular muscle and surrounded by an extensive fibrous tissue network. Genetic aberration, environmental interaction, and teratogenic substances are discussed as possible causes of the anomaly.

Simulation of Hydrologic-System Responses to Ground-Water Withdrawals in the Hunt-Annaquatucket-Pettaquamscutt Stream-Aquifer System, Rhode Island

USGS Publications Warehouse

Barlow, Paul M.; Ostiguy, Lance J.

2007-01-01

A numerical-modeling study was done to better understand hydrologic-system responses to ground-water withdrawals in the Hunt-Annaquatucket-Pettaquamscutt (HAP) stream-aquifer system of Rhode Island. System responses were determined by use of steady-state and transient numerical ground-water-flow models. These models were initially developed in the late 1990s as part of a larger study of the stream-aquifer system. The models were modified to incorporate new data made available since the original study and to meet the objectives of this study. Changes made to the models did not result in substantial changes to simulated ground-water levels, hydrologic budgets, or streamflows compared to those calculated by the original steady-state and transient models. Responses of the hydrologic system are described primarily by changes in simulated streamflows and ground-water levels throughout the basin and by changes to flow conditions in the aquifer in three wetland areas immediately east of the Lafayette State Fish Hatchery, which lies within the Annaquatucket River Basin in the town of North Kingstown. Ground water is withdrawn from the HAP aquifer at 14 large-capacity production wells, at an industrial well, and at 3 wells operated by the Rhode Island Department of Environmental Management at the fish hatchery. A fourth well has been proposed for the hatchery and an additional production well is under development by the town of North Kingstown. The primary streams of interest in the study area are the Hunt, Annaquatucket, and Pettaquamscutt Rivers and Queens Fort Brook. Total model-calculated streamflow depletions in these rivers and brook resulting from withdrawals at the production, industrial, and fish-hatchery wells pumping at average annual 2003 rates are about 4.8 cubic feet per second (ft3/s) for the Hunt River, 3.3 ft3/s for the Annaquatucket River, 0.5 ft3/s for the Pettaquamscutt River, and 0.5 ft3/s for Queens Fort Brook. The actual amount of streamflow reduction in the Annaquatucket River caused by pumping actually is less, 1.1 ft3/s, because ground water that is pumped at the fish-hatchery wells (2.2 ft3/s) is returned to the Annaquatucket River after use at the hatchery. One of the primary goals of the study was to evaluate the response of the hydrologic system to simulated withdrawals at the proposed well at the fish hatchery. Withdrawal rates at the proposed well would range from zero during April through September of each year to a maximum of 260 gallons per minute [about 0.4 million gallons per day (Mgal/d)] in March of each year. The average annual withdrawal rate at the fish hatchery resulting from the addition of the proposed well would increase by only 0.13 ft3/s, or about 5 percent of the 2003 withdrawal rate. The increased pumping rate at the hatchery would further reduce the average annual flow in Queens Fort Brook by less than 0.05 ft3/s and in the Annaquatucket River by about 0.1 ft3/s (which includes some model error). A new production well in the Annaquatucket River Basin is under development by the town of North Kingstown. A simulated pumping rate of 1.0 Mgal/d (1.6 ft3/s) at this new well resulted in additional streamflow depletions, compared to those calculated for the 2003 withdrawal conditions, of 0.8 and 0.2 ft3/s in the Annaquatucket and Pettaquamscutt Rivers, respectively. The source of water for about 30 percent of the well's pumping rate, or about 0.5 ft3/s, is derived from ground-water inflow from the Chipuxet River Basin across a natural ground-water drainage divide that separates the Annaquatucket and Chipuxet River Basins; the remaining 0.1 ft3/s of simulated pumping consists of reduced evapotranspiration from the water table. Model-calculated changes in water levels in the aquifer for the various withdrawal conditions simulated in this study indicate that ground-water-level declines caused by pumping are generally less than 5 feet (ft). However, ground-water-level declines of as

Effects of Iron Gate Dam discharge and other factors on the survival and migration of juvenile coho salmon in the lower Klamath River, northern California, 2006-09

USGS Publications Warehouse

Beeman, John; Juhnke, Steven; Stutzer, Greg; Wright, Katrina

2012-01-01

Current management of the Klamath River includes prescribed minimum discharges intended partly to increase survival of juvenile coho salmon during their seaward migration in the spring. To determine if fish survival was related to river discharge, we estimated apparent survival and migration rates of yearling coho salmon in the Klamath River downstream of Iron Gate Dam. The primary goals were to determine if discharge at Iron Gate Dam affected coho salmon survival and if results from hatchery fish could be used as a surrogate for the limited supply of wild fish. Fish from hatchery and wild origins that had been surgically implanted with radio transmitters were released into the Klamath River slightly downstream of Iron Gate Dam at river kilometer 309. Tagged fish were used to estimate apparent survival between, and passage rates at, a series of detection sites as far downstream as river kilometer 33. Conclusions were based primarily on data from hatchery fish, because wild fish were only available in 2 of the 4 years of study. Based on an information-theoretic approach, apparent survival of hatchery and wild fish was similar, despite differences in passage rates and timing, and was lowest in the 54 kilometer (km) reach between release and the Scott River. Models representing the hypothesis that a short-term tagging- or handling-related mortality occurred following release were moderately supported by data from wild fish and weakly supported by data from hatchery fish. Estimates of apparent survival of hatchery fish through the 276 km study area ranged from 0.412 (standard error [SE] 0.048) to 0.648 (SE 0.070), depending on the year, and represented an average of 0.790 per 100 km traveled. Estimates of apparent survival of wild fish through the study area were 0.645 (SE 0.058) in 2006 and 0.630 (SE 0.059) in 2009 and were nearly identical to the results from hatchery fish released on the same dates. The data and models examined supported positive effects of water temperature, river discharge, and fish weight as factors affecting apparent survival in the Klamath River upstream of the confluence with the Shasta River, but few of the variables examined were supported as factors affecting survival farther downstream. The effect of water temperature on apparent survival upstream of the Shasta River was greater than Iron Gate Dam discharge, which was greater than fish weight. The estimated effect on apparent survival between release and the Shasta River with each 1degree Celsius increase in water temperature was 1.4 times the effect of a 100 cubic feet per second increase in Iron Gate Dam discharge and 2.5 times the effect of a 1 gram increase in fish weight, and the effects of discharge and weight diminished at higher water temperatures up to the 17.91 degrees Celsius maximum present in the data examined. The rate of passage at the detection site near the confluence with the Shasta River was primarily affected by date of release, and water temperature was the only factor supported at the site near the confluence with the Scott River. Passage rates at sites downstream of the Scott River were affected by several of the variables examined, but the estimated effects were small and often imprecise. Results from this study indicate that discharge at Iron Gate Dam has a positive effect on apparent survival of yearling coho salmon in the Klamath River upstream of the Shasta River, but the effects are smaller than those of water temperature and are mediated by it. The results also support the use of hatchery fish as surrogates for wild fish in studies of apparent survival, but the available evidence suggests that study fish should be released well upstream of the area of interest, due to short-term differences in survival and migration behavior of hatchery and wild fish after release.

Yakima/Klickitat Fisheries Project: Short Project Overview of Spring Chinook Salmon Supplementation in the Upper Yakima Basin; Washington Department of Fish and Wildlife Policy/Technical Involvement and Planning, 2004-2005 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fast, David E.; Bosch, William J.

2005-09-01

The Yakima/Klickitat Fisheries Project (YKFP) is on schedule to ascertain whether new artificial production techniques can be used to increase harvest and natural production of spring Chinook salmon while maintaining the long-term genetic fitness of the fish population being supplemented and keeping adverse genetic and ecological interactions with non-target species or stocks within acceptable limits. The Cle Elum Supplementation and Research Facility (CESRF) collected its first spring chinook brood stock in 1997, released its first fish in 1999, and age-4 adults have been returning since 2001. In these initial years of CESRF operation, recruitment of hatchery origin fish has exceededmore » that of fish spawning in the natural environment, but early indications are that hatchery origin fish are not as successful at spawning in the natural environment as natural origin fish when competition is relatively high. When competition is reduced, hatchery fish produced similar numbers of progeny as their wild counterparts. Most demographic variables are similar between natural and hatchery origin fish, however hatchery origin fish were smaller-at-age than natural origin fish. Long-term fitness of the target population is being evaluated by a large-scale test of domestication. Slight changes in predation vulnerability and competitive dominance, caused by domestication, were documented. Distribution of spawners has increased as a result of acclimation site location and salmon homing fidelity. Semi-natural rearing and predator avoidance training have not resulted in significant increases in survival of hatchery fish. However, growth manipulations in the hatchery appear to be reducing the number of precocious males produced by the YKFP and consequently increasing the number of migrants. Genetic impacts to non-target populations appear to be low because of the low stray rates of YKFP fish. Ecological impacts to valued non-target taxa were within containment objectives or impacts that were outside of containment objectives were not caused by supplementation activities. Some fish and bird piscivores have been estimated to consume large numbers of salmonids in the Yakima Basin. Natural production of Chinook salmon in the upper Yakima Basin appears to be density dependent under current conditions and may constrain the benefits of supplementation. However, such constraints (if they exist) could be countered by YKFP habitat actions that have resulted in: the protection of over 900 acres of prime floodplain habitat, reconnection and screening of over 15 miles of tributary habitat, substantial water savings through irrigation improvements, and restoration of over 80 acres of floodplain and side channels. Harvest opportunities for tribal and non-tribal fishers have also been enhanced, but are variable among years. The YKFP is still in the early stages of evaluation, and as such the data and findings presented in this report should be considered preliminary until further data is collected and analyses completed. Nonetheless, the YKFP has produced significant findings, and produced methodologies that can be used to evaluate and improve supplementation. A summary table of topical area performance is presented.« less

Introduction [to Issue 3

USGS Publications Warehouse

Zimmerman, Christian E.; Nielsen, Jennifer L.

2004-01-01

Artificial propagation of aquatic organisms is increasing globally and currently accounts for approximately 32% of total world fishery production (Vannuccini, 2004). Between 1970 and 2000, aquaculture production of salmonids has grown from less than 200,000 metric tons per year to over 1.5 million metric tons (Tacon, 2003). In 1995, the number of Atlantic salmon (Salmo salar) far exceeded the carrying capacity of salmon in the wild but over 94% of all adult Atlantic salmon were in aquaculture environments (Gross, 1998).Since the 1970’s, concerns have arisen about interactions of hatchery and wild produced salmonids in native habitats. In response, research has addressed concerns about domestication and genetic impacts (Reisenbichler and McIntyre, 1977; Hindar et al., 1991; Waples, 1991; Clifford et al., 1998a; Fleming et al., 2000, 2002; Hard et al., 2000), transfer of disease and parasites (Johnsen and Jensen, 1994; Bakke and Harris, 1998), behavior of spawning adults (Fleming and Gross, 1992; Fleming et al., 1994; Økland et al., 1995; Youngston et al., 1998), differences in fitness traits and life history (Jonsson et al., 1991; Thodesen et al., 1999; McGinnity et al., 2003), and behavioral interactions between hatchery and wild juvenile salmon (Swain and Riddell, 1990; Johnsson et al., 1996; Clifford et al., 1998b). Much of this research has been driven by concerns about the impacts of escaped farmed Atlantic salmon in the North Atlantic Ocean (Hansen et al., 1991). Studies of the interactions between hatchery and wild salmonids, with few exceptions (see Myers et al., 2000), have primarily focused on interactions in freshwater environments.Interactions between hatchery and wild fishes in estuarine and marine environments have not received the same attention, but may have signifi- cant impacts on wild populations. To address this issue, we organized a symposium held at the 2003 annual meeting of the Western Division of the American Fisheries Society in San Diego, California. The session was titled Interactions of Hatchery and Wild Fishes in Marine and Estuarine Environments and included nine presentations. All but one presentation focused on salmonids. This Special Issue of Reviews in Fish Biology and Fisheries includes five papers that were submitted to the symposium.

Stocking of Offsite Waters for Hungry Horse Dam Mitigation; Creston National Fish Hatchery, 2002-2003 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

US Fish and Wildlife Service Staff,

2004-02-01

Mitigation Objective 1: Produce Native Westslope Cutthroat Trout at Creston NFH--Task: Acquire eggs and rear up to 100,000 Westslope Cutthroat trout annually for offsite mitigation stocking. Accomplishments: A total of 141,000 westslope cutthroat eggs (M012 strain) was acquired from the State of Montana Washoe Park State Fish Hatchery in May 2002 for this objective. We also received an additional 22,000 westslope cutthroat eggs, MO12 strain naturalized, from feral fish at Rogers Lake, Flathead County, Montana. The fish were reared using approved fish culture techniques as defined in the U.S. Fish and Wildlife Service, Fish Hatchery Management guidelines. Survival from themore » swim up fry stage to stocking was 95.6%. We achieved a 0.80 feed conversion this year on a new diet, Skretting ''Nutra Plus''. Post release survival and angler success is monitored annually by Montana Fish Wildlife and Parks (MFWP) and the Confederated Salish and Kootenai Tribe (CSKT). Stocking numbers and locations vary yearly based on results of biological monitoring and adaptive management. Mitigation Objective 2: Produce Rainbow Trout at Creston NFH--Task: Acquire and rear up to 100,000 Rainbow trout annually for offsite mitigation in closed basin waters. Accomplishments: A total of 54,000 rainbow trout eggs (Arlee strain) was acquired from the Ennis National Fish Hatchery in December 2002 for this objective. The fish were reared using approved fish culture techniques as defined in the U.S. Fish and Wildlife Service, Fish Hatchery Management guidelines. Survival from the swim up fry stage to stocking was 99.9%. We achieved a 0.79 feed conversion this year on a new diet, Skretting ''Nutra Plus''. Arlee rainbow trout are being used for this objective because the stocking locations are terminal basin reservoirs and habitat conditions and returns to the creel are unsuitable for native cutthroat. Post release survival and angler success is monitored annually by the Confederated Salish and Kootenai Tribe (CSKT). Stocking numbers and locations vary yearly based on results of biological monitoring and adaptive management.« less

On the Frontline: Tracking Ocean Acidification in an Alaskan Shellfish Hatchery

PubMed Central

Evans, Wiley; Mathis, Jeremy T.; Ramsay, Jacqueline; Hetrick, Jeff

2015-01-01

The invasion of anthropogenic carbon dioxide (CO2) into the ocean is shifting the marine carbonate system such that saturation states of calcium carbonate (CaCO3) minerals are decreasing, and this is having a detrimental impact on early life stages of select shellfish species. The global, secular decrease in CaCO3 saturation states is occurring on top of a backdrop of large natural variability in coastal settings; progressively shifting the envelope of variability and leading to longer and more frequent exposure to adverse conditions. This is a great concern in the State of Alaska, a high-latitude setting vulnerable to rapid changes in the marine carbonate system, where an emerging shellfish industry plans major growth over the coming decades. Currently, the Alutiiq Pride Shellfish Hatchery (APSH) in Seward, Alaska is the only hatchery in the state, and produces many shellfish species with early life stages known to be sensitive to low CaCO3 saturation states. Here we present the first land-based OA measurements made in an Alaskan shellfish hatchery, and detail the trends in the saturation state of aragonite (Ωarag), the more soluble form of CaCO3, over a 10-month period in the APSH seawater supply. These data indicate the largest changes are on the seasonal time scale, with extended periods of sub-optimal Ωarag levels (Ωarag < 1.5) in winter and autumn associated with elevated water column respiration and short-lived runoff events, respectively. The data pinpoint a 5-month window of reprieve with favorable Ωarag conditions above the sub-optimal Ωarag threshold, which under predicted upper-bound CO2 emissions trajectories is estimated to close by 2040. To date, many species in production at APSH remain untested in their response to OA, and the data presented here establish the current conditions at APSH as well as provide a framework for hatchery-based measurements in Alaska. The current and expected conditions seen at APSH are essential to consider for this developing Alaskan industry. PMID:26131723

Multidimensionality of behavioural phenotypes in Atlantic cod, Gadus morhua.

PubMed

Meager, Justin J; Fernö, Anders; Skjæraasen, Jon Egil; Järvi, Torbjörn; Rodewald, Petra; Sverdrup, Gisle; Winberg, Svante; Mayer, Ian

2012-06-25

Much of the inter-individual variation observed in animal behaviour is now attributed to the existence of behavioural phenotypes or animal personalities. Such phenotypes may be fundamental to fisheries and aquaculture, yet there have been few detailed studies of this phenomenon in exploited marine animals. We investigated the behavioural and neuroendocrine responses of Atlantic cod (Gadus morhua L.), to situations reflecting critical ecological challenges: predator attacks and territorial challenges. Both hatchery-reared and wild fish were tested and behavioural profiles were compared with baseline conditions. We then used an objective, multivariate approach, rather than assigning individuals along one-dimensional behavioural axes, to examine whether distinct behavioural phenotypes were present. Our results indicate that two distinct behavioural phenotypes were evident in fish from each background. In hatchery-reared fish, phenotypes displayed divergent locomotor activity, sheltering, brain monoamine concentrations and responses to competitive challenges. In wild fish, phenotypes were distinguished primarily by locomotor activity, sheltering and responsiveness to predator stimuli. Hatcheries presumably represent a more stressful social environment, and social behaviour and neuroendocrine responses were important in discerning behavioural phenotypes in hatchery fish, whereas antipredator responses were important in discerning phenotypes in wild fish that have previously encountered predators. In both fish types, behavioural and physiological traits that classified individuals into phenotypes were not the same as those that were correlated across situations. These results highlight the multidimensionality of animal personalities, and that the processes that regulate one suite of behavioural traits may be very different to the processes that regulate other behaviours. Copyright © 2012 Elsevier Inc. All rights reserved.

Use of a Fish Transportation Barge for Increasing Returns of Steelhead Imprinted for Homing, Final Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harmon, Jerrel R.

1989-08-01

The objective of this 7-year National Fisheries Service study, which began is 1982, was to determine if transporting juvenile steelhead (Oncorhynchus mykiss) by truck and barge from Dworshak National Fish Hatchery (NFH), on the Clearwater River, to a release site on the Columbia River below Bonneville Dam would result in increased returns of adults to the various fisheries and to the hatchery homing site. During 1982 and 1983, over 500,000 marked juvenile steelhead were serially released as controls from the hatchery or barged as test fish to below Bonneville Dam. Recoveries of marked adults to various recovery sites are complete.more » Fish released in 1983 showed a stronger homing ability and more rapid upstream migration than test fish released in 1982. Most adults from both control and test releases in 1983 and control releases in 1982 migrated a considerable distance upstream and overwintered in the Snake and Clearwater Rivers--behavior similar to Clearwater River fish previously transported from Lower Granite Dam. In contrast, many of the adults from test releases in 1982 failed to migrate upstream during the fall, overwintered in the Columbia River, and migrated upstream the following spring. Survival of control fish released at Dworshak NFH in late April 1982 was substantially higher than survival of those released in mid-May. Survival and homing of control fish released in late April and early May 1983 were over 10 times that for fish released in late May. Return of adults from normal hatchery releases in 1982 was the highest ever observed at Dworshak NFH.« less

Genome-wide nucleotide diversity of hatchery-reared Atlantic and Mediterranean strains of brown trout Salmo trutta compared to wild Mediterranean populations.

PubMed

Leitwein, M; Gagnaire, P-A; Desmarais, E; Guendouz, S; Rohmer, M; Berrebi, P; Guinand, B

2016-12-01

A genome-wide assessment of diversity is provided for wild Mediterranean brown trout Salmo trutta populations from headwater tributaries of the Orb River and from Atlantic and Mediterranean hatchery-reared strains that have been used for stocking. Double-digest restriction-site-associated DNA sequencing (dd-RADseq) was performed and the efficiency of de novo and reference-mapping approaches to obtain individual genotypes was compared. Large numbers of single nucleotide polymorphism (SNP) markers with similar genome-wide distributions were discovered using both approaches (196 639 v. 121 016 SNPs, respectively), with c. 80% of the loci detected de novo being also found with reference mapping, using the Atlantic salmon Salmo salar genome as a reference. Lower mapping density but larger nucleotide diversity (π) was generally observed near extremities of linkage groups, consistent with regions of residual tetrasomic inheritance observed in salmonids. Genome-wide diversity estimates revealed reduced polymorphism in hatchery strains (π = 0·0040 and π = 0·0029 in Atlantic and Mediterranean strains, respectively) compared to wild populations (π = 0·0049), a pattern that was congruent with allelic richness estimated from microsatellite markers. Finally, pronounced heterozygote deficiency was found in hatchery strains (Atlantic F IS = 0·18; Mediterranean F IS = 0·42), indicating that stocking practices may affect the genetic diversity in wild populations. These new genomic resources will provide important tools to define better conservation strategies in S. trutta. © 2016 The Fisheries Society of the British Isles.

Nutrient effects of broodstocks on the larvae in Patinopecten yessoensis

NASA Astrophysics Data System (ADS)

Bai, Yucen; Zhang, Tao; Qiu, Tianlong; Gao, Yan; Zhang, Xiaofang

2015-07-01

Patinopecten yessoensis is a commercial valuable species. This study deals with the effect of nutrient effects of the broodstock (mainly ovaries) on the larvae. Concentrations of total carbohydrate, total protein and total lipid in the gonads of P. yessoensis from three Hatcheries (Hatchery 1, Hatchery 2, and Hatchery 3) were determined before and after spawning. The relationship between the nutrient concentration in ovaries before spawning (BC) and that of larvae (LC) was assessed as well as the change in nutrient levels in ovaries after spawning (DC). Results indicate that the BC of total carbohydrate (7.66%) and total lipid (14.48%) in ovaries were significantly higher than in testes (5.20%, 5.20% respectively), whereas the BC of total protein in the ovaries was lower (61.76%) than in the testes (81.67%). The different gonadal composition suggests the different nutrient demands between male and female broodstocks in breeding season. Patinopecten yessoensis gonads contained a higher proportion of lipids, in comparison to other bivalves, which might be a response to the low ambient water temperatures. Further analysis of fatty acids showed that the concentrations of n-3PUFA, EPA and DHA in larvae (LC) were positively correlated with BC and DC, indicating the significant nutrient influence of broodstocks on the larvae. As these fatty acids are important in metabolism, and have been demonstrated to be influential to the viability of the larvae, larval growth and the settlement, spat growth, and juvenile survival in many bivalves, they could possibly be used as indexes to evaluate, and predict condition of broodstocks and larvae.

Application of a bioenergetics model for hatchery production: Largemouth bass fed commercial diets

USGS Publications Warehouse

Csargo, Isak J.; Michael L. Brown,; Chipps, Steven R.

2012-01-01

Fish bioenergetics models based on natural prey items have been widely used to address research and management questions. However, few attempts have been made to evaluate and apply bioenergetics models to hatchery-reared fish receiving commercial feeds that contain substantially higher energy densities than natural prey. In this study, we evaluated a bioenergetics model for age-0 largemouth bass Micropterus salmoidesreared on four commercial feeds. Largemouth bass (n ≈ 3,504) were reared for 70 d at 25°C in sixteen 833-L circular tanks connected in parallel to a recirculation system. Model performance was evaluated using error components (mean, slope, and random) derived from decomposition of the mean square error obtained from regression of observed on predicted values. Mean predicted consumption was only 8.9% lower than mean observed consumption and was similar to error rates observed for largemouth bass consuming natural prey. Model evaluation showed that the 97.5% joint confidence region included the intercept of 0 (−0.43 ± 3.65) and slope of 1 (1.08 ± 0.20), which indicates the model accurately predicted consumption. Moreover model error was similar among feeds (P = 0.98), and most error was probably attributable to sampling error (unconsumed feed), underestimated predator energy densities, or consumption-dependent error, which is common in bioenergetics models. This bioenergetics model could provide a valuable tool in hatchery production of largemouth bass. Furthermore, we believe that bioenergetics modeling could be useful in aquaculture production, particularly for species lacking historical hatchery constants or conventional growth models.

Bioenergetic model estimates of interannual and spatial patterns in consumption demand and growth potential of juvenile pink salmon ( Oncorhynchus gorbuscha) in the Gulf of Alaska

NASA Astrophysics Data System (ADS)

Moss, Jamal H.; Beauchamp, David A.; Cross, Alison D.; Farley, Edward V.; Murphy, James M.; Helle, John H.; Walker, Robert V.; Myers, Katherine W.

2009-12-01

A bioenergetic model of juvenile pink salmon ( Oncorhynchus gorbuscha) was used to estimate daily prey consumption and growth potential of four ocean habitats in the Gulf of Alaska during 2001 and 2002. Growth potential was not significantly higher in 2002 than in 2001 at an alpha level of 0.05 ( P=0.073). Average differences in growth potential across habitats were minimal (slope habitat=0.844 g d -1, shelf habitat=0.806 g d -1, offshore habitat=0.820 g d -1, and nearshore habitat=0.703 g d -1) and not significantly different ( P=0.630). Consumption demand differed significantly between hatchery and wild stocks ( P=0.035) when examined within year due to the interaction between hatchery verses wild origin and year. However, the overall effect of origin across years was not significant ( P=0.705) due to similar total amounts of prey consumed by all juvenile pink salmon in both study years. We anticipated that years in which ocean survival was high would have had high growth potential, but this relationship did not prove to be true. Therefore, modeled growth potential may not be useful as a tool for forecasting survival of Prince William Sound hatchery pink salmon stocks. Significant differences in consumption demand and a two-fold difference in nearshore abundance during 2001 of hatchery and wild pink salmon confirmed the existence of strong and variable interannual competition and the importance of the nearshore region as being a potential competitive bottleneck.

Bioenergetic model estimates of interannual and spatial patterns in consumption demand and growth potential of juvenile pink salmon (Oncorhynchus gorbuscha) in the Gulf of Alaska

USGS Publications Warehouse

Moss, J.H.; Beauchamp, D.A.; Cross, A.D.; Farley, E.V.; Murphy, J.M.; Helle, J.H.; Walker, R.V.; Myers, K.W.

2009-01-01

A bioenergetic model of juvenile pink salmon (Oncorhynchus gorbuscha) was used to estimate daily prey consumption and growth potential of four ocean habitats in the Gulf of Alaska during 2001 and 2002. Growth potential was not significantly higher in 2002 than in 2001 at an alpha level of 0.05 (P=0.073). Average differences in growth potential across habitats were minimal (slope habitat=0.844 g d-1, shelf habitat=0.806 g d-1, offshore habitat=0.820 g d-1, and nearshore habitat=0.703 g d-1) and not significantly different (P=0.630). Consumption demand differed significantly between hatchery and wild stocks (P=0.035) when examined within year due to the interaction between hatchery verses wild origin and year. However, the overall effect of origin across years was not significant (P=0.705) due to similar total amounts of prey consumed by all juvenile pink salmon in both study years. We anticipated that years in which ocean survival was high would have had high growth potential, but this relationship did not prove to be true. Therefore, modeled growth potential may not be useful as a tool for forecasting survival of Prince William Sound hatchery pink salmon stocks. Significant differences in consumption demand and a two-fold difference in nearshore abundance during 2001 of hatchery and wild pink salmon confirmed the existence of strong and variable interannual competition and the importance of the nearshore region as being a potential competitive bottleneck.

Using parentage analysis to estimate rates of straying and homing in Chinook salmon (Oncorhynchus tshawytscha).

PubMed

Ford, Michael J; Murdoch, Andrew; Hughes, Michael

2015-03-01

We used parentage analysis based on microsatellite genotypes to measure rates of homing and straying of Chinook salmon (Oncorhynchus tshawytscha) among five major spawning tributaries within the Wenatchee River, Washington. On the basis of analysis of 2248 natural-origin and 11594 hatchery-origin fish, we estimated that the rate of homing to natal tributaries by natural-origin fish ranged from 0% to 99% depending on the tributary. Hatchery-origin fish released in one of the five tributaries homed to that tributary at a far lower rate than the natural-origin fish (71% compared to 96%). For hatchery-released fish, stray rates based on parentage analysis were consistent with rates estimated using physical tag recoveries. Stray rates among major spawning tributaries were generally higher than stray rates of tagged fish to areas outside of the Wenatchee River watershed. Within the Wenatchee watershed, rates of straying by natural-origin fish were significantly affected by spawning tributary and by parental origin: progeny of naturally spawning hatchery-produced fish strayed at significantly higher rates than progeny whose parents were themselves of natural origin. Notably, none of the 170 offspring that were products of mating by two natural-origin fish strayed from their natal tributary. Indirect estimates of gene flow based on FST statistics were correlated with but higher than the estimates from the parentage data. Tributary-specific estimates of effective population size were also correlated with the number of spawners in each tributary. Published [2015]. This article is a U.S. Government work and is in the public domain in the USA.

Susceptibility to an inoculum of infectious hypodermal and haematopoietic necrosis virus (IHHNV) in three batches of whiteleg shrimp Litopenaeus vannamei (Boone, 1931)

PubMed Central

Escobedo-Bonilla, César Marcial; Rangel, José Luis Ibarra

2014-01-01

Abstract The present study evaluated the susceptibility of three different batches of whiteleg shrimp Litopenaeus vannamei from Mexico to an inoculum of infectious hypodermal and haematopoietic necrosis virus (IHHNV). Each of the three shrimp batches came from a different hatchery. Because of their origin, it was possible that the genetic makeup of these batches was different among each other. The three batches tested showed differences in IHHNV susceptibility. Here, susceptibility is defined as the capacity of the host to become infected, and it can be measured by the infectivity titer. Susceptibility to IHHNV was observed in decreasing order in shrimp from batch 1 (hatchery from El Rosario, Sinaloa), batch 3 (hatchery from Nayarit) and batch 2 (hatchery from El Walamo, Sinaloa), respectively. The largest susceptibility difference between batches was 5012 times, and that between early and late juveniles from the same batch was 25 times. These results indicate that within a species, susceptibility to a pathogen such as IHHNV can have large differences. Susceptibility to pathogens is an important trait to consider before performing studies on pathogenesis. It may influence virological parameters such as speed of replication, pathogenicity and virus titer. In order to evaluate the potential use of IHHNV as a natural control agent against white spot syndrome virus (WSSV), it is necessary to know host susceptibility and the kinetics of IHHNV infection. These features can help to determine the conditions in which IHHNV could be used as antagonist in a WSSV infection. PMID:25561847

The microscope in the hatchery

USGS Publications Warehouse

Fish, F.F.

1935-01-01

Without the aid of the microscope, it is safe to assume that fish Culture would now stand exactly where it did seventy-five years ago when methods of artificial fertilization were first applied. It is also safe to assume that the results from fish culture would be as unsatisfactory as they were at that time when the fishery resources were steadily declining in spite of the increased liberation of advanced fry from the hatcheries. During the past few years the microscope has saved millions of fish in our hatcheries which otherwise would have been sacrificed to disease. Moreover, the microscope has permitted all of the recent work in selective breeding, nutritional requirements, and disease control. This work marks most of the progress fish culture has made during the past twenty-five years. This progress forms the first definite step away from the old system of hatching and distributing fish, a system which was founded by the ancient Chinese. The microscope has been the key which enabled the fish culturist to solve the riddle of success which has stood, unanswered, for 2,500 years.

Summary of Findings from Coded Wire Tag Analysis from Spring Chinook Salmon Spawning Surveys in the Clearwater Basin, Technical Report 2001.

DOE Office of Scientific and Technical Information (OSTI.GOV)

S.P. Cramer & Associates, Inc.

2002-05-31

We recently received data on the decoded coded wire tags (CWT's) recovered from spring chinook snouts we collected during spawning surveys in the Clearwater Basin last fall (2001). We were curious about what could be learned from the tags recovered (even though our project is over), so we did some cursory analyses and have described our findings in the attached memo. Snouts were processed and codes determined by Idaho Department of Fish and Game. Most snouts did not contain CWTs, because most ad-clipped fish were not given a CWT. Further, because adults were outplanted live, we do not know whatmore » codes they contained. Each of the hatcheries from which outplanted adults were obtained had several CWT code groups returning. That means that the best we can do with the codes recovered is compare the hatchery of origin for the tag with the hatchery from which outplants were taken. The results are interesting and not exactly as we would have predicted.« less

Comparing the Reproductive Success of Yakima River Hatchery and Wild-Origin Spring Chinook; Yakima/Klickitat Fisheries Project Monitoring and Evaluation Report 4 of 7, 2003-2004 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schroder, S.L.; Knudsen, C.M.; Watson, B.D.

In September of 2003, twenty-nine hatchery and twenty-eight wild spring chinook adults were placed into the observation stream located at the Cle Elum Supplementation Research Facility. In, addition 20 precocious males, 7 hatchery and 13 wild, were simultaneously released into the structure. As in previous years, the fish had small amounts of fin material removed prior to being introduced into the stream so that microsatellite DNA based pedigree analyses could be performed on their subsequent progeny. The entire 127 m long by 7.9 m wide stream was made available to this group of fish. Continuous behavioral observations were made whilemore » the females prepared nests and spawned. Moreover, standard measurements of adult longevity, spawning participation, water velocity, redd sizes, gravel composition, water temperature and flow were taken. Fry produced from these fish started to emigrate from the stream in early January 2004. They were trapped and sub-sampled for later microsatellite DNA analyses. In mid May of 2004 fry emergence from the channel was complete and residual fish were captured by seine and electro-fishing so that the entire juvenile population could be proportionately sampled. Audiotape records of the behavior of wild and hatchery adults spawning in the observation stream in 2001 were transcribed into continuous ethograms. Courting, agonistic, and location data were extracted from these chronological records and analyzed to characterize the reproductive behavior of both hatchery and wild fish. In addition, a ''gold standard'' pedigree analysis was completed on the fry originating from the adults placed into the observation stream in 2001. Behavioral and morphological data collected on hatchery and wild males were linked to the results of the pedigree analysis to ascertain what factors affected their reproductive success (RS) or capacity to produce fry. Individual RS values were calculated for each male placed into the observation stream and the coefficient of variation calculated from these values was greater than 100%. To determine what might be responsible for this degree of variation we examined the relative importance of a variety of physical and behavioral traits. Relative body size, for example, was found not be an important predictor of reproductive success. Instead, the capacity to court females and dominate sexual rivals was directly associated with male RS. However, males that had low dominance scores were also successful at producing offspring. These individuals utilized alternative behavioral strategies to gain close proximity to females and were successful in their attempts to fertilize eggs. Observations made on the color patterns of males showed dominance was closely linked with the possession of an overall black or dark brown color pattern. In addition, we discovered that males that had multiple mates achieved higher RS values than those who spawned with fewer females. The approach we are taking to compare the reproductive competency of hatchery and wild fish is to first determine the factors that are strongly linked to reproductive behavior and then assess whether significant differences occur in the expression of these traits based on the fish origin. Transcriptions of audiotapes are continuing and a second gold standard pedigree analyses on the fry produced from adults placed into the observation stream in 2002 is nearing completion. Future work will be directed at discovering the factors that affect female RS values. In the fall of 2004 we will again liberate hatchery and wild fish simultaneously into the entire observation stream to continue our efforts to objectively determine if differences in RS are caused by fish origin.« less

Progress toward lake trout restoration in Lake Michigan

USGS Publications Warehouse

Holey, Mark E.; Rybicki, Ronald W.; Eck, Gary W.; Brown, Edward H.; Marsden, J. Ellen; Lavis, Dennis S.; Toneys, Michael L.; Trudeau, Tom N.; Horrall, Ross M.

1995-01-01

Progress toward lake trout restoration in Lake Michigan is described through 1993. Extinction of the native lake trout fishery by sea lamprey predation, augmented by exploitation and habitat destruction, resulted in an extensive stocking program of hatchery-reared lake trout that began in 1965. Sea lamprey abundance was effectively controlled using selective chemical toxicants. The initial stocking produced a measurable wild year class of lake trout by 1976 in Grand Traverse Bay, but failed to continue probably due to excessive exploitation. The overall lack of successful reproduction lakewide by the late 1970s led to the development and implementation in 1985 of a focused inter-agency lakewide restoration plan by a technical committee created through the Lake Committee structure of the Great Lakes Fishery Commission. Strategies implemented in 1985 by the plan included setting a 40% total mortality goal lakewide, creating two large refuges designed to encompass historically the most productive spawning habitat and protect trout stocked over their home range, evaluating several lake trout strains, and setting stocking priorities throughout the lake. Target levels for stocking in the 1985 Plan have never been reached, and are much less than the estimated lakewide recruitment of yearlings by the native lake trout stocks. Since 1985, over 90% of the available lake trout have been stocked over the best spawning habitat, and colonization of the historically productive offshore reefs has occurred. Concentrations of spawning lake trout large enough for successful reproduction, based on observations of successful hatchery and wild stocks, have developed at specific reefs. Continued lack of recruitment at these specific sites suggests that something other than stotk abundance has limited success. Poor survival of lake trout eggs, assumed to be related to contaminant burden, occurred in the late 1970s and early 1980s, but survival has since increased to equal survival in the hatchery. A recent increase in lamprey wounding rates in northern Lake Michigan appears to be related to the uncontrolled build-up of lampreys in the St. Marys River a tributary of Lake Huron. If left uncontrolled, further progress toward restoration in the Northern Refuge may be limited.

Assessment of smolt condition for travel time analysis. Annual report 1988

USGS Publications Warehouse

Rondorf, D.W.; Beeman, J.W.; Faler, J.C.; Free, M.E.; Wagner, E.J.

1989-01-01

Estimates of migration rates and travel times of juvenile salmonids within index reaches of the Columbia River basin are collected through the Smolt Monitoring Program for use by the Fish Passage Center. With increased reliance upon travel time estimates in 1988 by the Fish Passage Center, this study was implemented to monitor the biological attributes of juvenile chinook salmon Oncorhynchus tshawytscha and steelhead trout 0.- mykiss used for the travel time estimates, The physiological ability of fish to respond to stress was assessed by measuring levels of plasma cortisol, glucose, and chloride before and after a stress-challenge test. Most mid-Columbia and Snake river groups responded normally to the stress challenge exhibiting an increase in plasma glucose and cortisol and a slight decrease in chloride. Fish trucked to release sites were more stressed than those released directly from the hatchery, but most still responded to the stress challenge test normally. An abnormal or extreme stress response occurred when there were deviations from preferred protocol, disease problems at hatcheries, or when fish were trucked over long periods (7h). The development of smoltification was evaluated by measuring gill Na+K+-ATPase, plasma thyroxine, purines, and body morphology. Most groups were similar at the hatcheries but differed as the migration to McNary Dam proceeded. Gill ATPase activity increased 2-3 fold during the first 20 days of migration, after which it changed little. Fish with longer in-river travel times appeared to be more smolted than those which were in the river for a shorter period of time. The prevalence of bacterial kidney disease (BKD) in spring chinook salmon was evaluated using the enzyme linked immunosorbent assay (ELISA) and fluorescent antibody technique (FAT). Prevalence of BKD in groups tested using the ELISA method was as high as 99% at some downstream locations. A review of indices is presented as a guide, to the development of an index of smolt condition and preliminary data are presented. An index could be used as a tool to synthesize information on fish condition to assist with management and evaluation of the Water Budget.

Washington Department of Fish and Wildlife Fish Program Hatcheries Division: Ford Hatchery, Annual Report 2001-2002.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lewis, Mike; Polacek, Matt; Knuttgen, Kamia

2002-11-01

The Washington Department of Fish and Wildlife implemented the Banks Lake Fishery Evaluation Project (BLFEP) in September 2001 with funds from the Bonneville Power Administration. The first year of the BLFEP was used to gather historic information, establish methods and protocols, collect limnology data, and conduct the first seasonal fish surveys. Water quality parameters were collected monthly from February to May and bi-monthly from June to August. Banks Lake water temperatures began to increase in April and stratification was apparent by June at all 3 limnology collection sites. By late August, the thermocline had dropped to nearly 20 m deep,more » with 19-20 C temperatures throughout the epilimnion. Dissolved oxygen levels were generally above 10 mg/L until mid summer when dissolved oxygen dropped near or below 5 mg/L below 20-m deep. Secchi depths ranged from 3-10 m and varied by location and date. Nearshore and offshore fish surveys were conducted in May and July using boat electrofishing, fyke net, gill net, and hydroacoustic surveys. Smallmouth bass Micropterous dolomieui (24%) and lake whitefish Coregonus clupeaformis (20%) dominated the nearshore species composition in May; however, by July yellow perch Perca flavescens (26%) were the second most common species to smallmouth bass (30%). Lake whitefish dominated the offshore catch during May (72%) and July (90%). The May hydroacoustic survey revealed highest densities of fish in the upper 1/3 of the water column in the mid- to northern sections of the reservoir near Steamboat Rock. In the future, data from seasonal surveys will be used to identify potential factors that may limit the production and harvest of kokanee, rainbow trout, and various spiny-rayed fishes in Banks Lake. The limiting factors that will be examined consist of: abiotic factors including water temperature, dissolved oxygen levels, habitat, exploitation and entrainment; and biotic factors including food limitation and predation. The BLFEP will also evaluate the success of several rearing and stocking strategies for hatchery kokanee in Banks Lake.« less

Contaminant levels in rainbow trout, Oncorhynchus mykiss, and their diets from Missouri coldwater hatcheries

USGS Publications Warehouse

McKee, M.J.; Kromrey, G.B.; May, T.W.; Orazio, C.E.

2008-01-01

Organochlorine and metal contaminants often occur in commercial fish diets and can accumulate in fish to levels of concern for human consumption. Contaminant levels were investigated in diet and rainbow trout fillets from Missouri coldwater hatcheries used in 'put and take' fisheries. The average fillet:diet ratio was <0.1 for lead and cadmium, 0.4-0.6 for organochlorine compounds, and about 0.8 for mercury. Trout fillet concentrations for all contaminants were low (<50 ng/g) and below Missouri's fish consumption advisory trigger levels. ?? 2008 Springer Science+Business Media, LLC.

Disease control in hatchery fish

USGS Publications Warehouse

Fish, F.F.

1947-01-01

The method described herein has been extensively tested, both in the laboratory and at the producing hatchery, over a period of several years. Once familiarity with the details of application have been mastered, th8 reduction in effort required to treat fish is amazing. For example, two men have treated 20 large ponds containing several million fish, in one morning with no significant increase in mortality of the fish, whereas a crew of eight men required a full day to treat a single similar pond by hand dipping the fish with a subsequent loss approximating 50 percent of the stock.

Assessment of smolt condition for travel time analysis. Annual report 1989

USGS Publications Warehouse

Beeman, J.W.; Rondorf, D.W.; Faler, J.C.; Free, M.E.; Haner, P.V.

1990-01-01

The Water Budget is a volume of water used to enhance environmental conditions (flows) in the Columbia and Snake rivers for juvenile salmonids during their seaward migration. To manage the Water Budget, the Fish Passage Center estimates travel times of juvenile salmonids in index reaches of the main-stem rivers, using information on river flows and the migrational characteristics of the juvenile salmonids. This study was initiated to provide physiological information on the juvenile salmonids used for these travel time estimates. The physiological ability to respond to stressors was evaluated by measuring concentrations of plasma cortisol, glucose, and chlorides before and after a 30-s handling-stress challenge test. As in 1988, most groups responded satisfactorily to the challenge. The scope for response was compromised among two groups of juvenile chinook salmon that were trucked to release sites and in steelhead from one hatchery after unusual marking and transportation protocols were used. The development of smoltification was assessed by measuring gill Na+-K+ ATPase activity and plasma thyroxine concentrations. Mean ATPase activities of marked hatchery groups of juvenile chinook salmon and steelhead changed little during the month before release and rose sharply for about the first 20 d of the migration after release. Mean plasma thyroxine was highest during the first 20 d after release. Mean gill ATPase activity of spring chinook salmon from the migration-at-large peaked at about the 90th percentile of passage at Rock Island and Lower Granite dams, and at about the 50th percentile of passage at McNary Dam. Mean gill ATPase activity of wild steelhead was higher than gill ATPase activity of hatchery steelhead at Rock Island Dam, the Snake River Trap, and Lower Granite Dam, but not at McNary Dam. This was attributed to a time-dependent relationship between increases in ATPase activity and the number of days fish migrated before recapture. Correlations of gill ATPase activity and/or plasma thyroxine concentrations with condition factor, morphology, or skin guanine concentration may be useful as non-lethal indicators of smoltification for inclusion in a smoltification index. Prevalence of bacterial kidney disease in spring chinook salmon was generally higher than in 1988, ranging from 81-100% using an enzyme-linked immunosorbent assay (ELISA) method. Fish from Snake River hatcheries had more severe infections than those from mid-Columbia hatcheries. The percentage of fish with severe infections was lower at two downstream dams than at the Snake River hatcheries of origin, suggesting a bias in dam collection facilities or that these fish ceased to migrate, either of which could lead to biases in travel time estimates.

Steelhead Supplementation in Idaho Rivers, 2000 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Byrne, Alan

In 2000, we continued our assessment of the Sawtooth Hatchery steelhead stock to reestablish natural populations in Beaver and Frenchman creeks in the upper Salmon River. We stocked both streams with 15 pair of hatchery adults and estimated the potential smolt production from the 1999 outplant. I estimated that about nine smolts per female could be produced in both streams from the 1999 outplant. The smolt-to-adult return would need to exceed 20% to return two adults at this level of production. In the Red River drainage, we stocked Dworshak hatchery stock fingerlings and smolts, from 1993 to 1999, to assessmore » which life-stage produces more progeny when the adults return to spawn. In 2000, we operated the Red River weir to trap adults that returned from these stockings, but none were caught from either group. We continued to monitor wild steelhead populations in the Lochsa and Selway river drainages. We estimated that 26 wild adult steelhead returned to Fish Creek. This is the lowest adult escapement we have documented (when the weir was intact all spring) since we began monitoring Fish Creek in 1992. I estimated that nearly 25,000 juvenile steelhead migrated out of Fish Creek this year. Juvenile steelhead densities in Lochsa and Selway tributaries were similar to those observed in 1999. In 2000, we obtained funding for a DNA analysis to assess Idaho's steelhead stock structure. We collected fin samples from wild steelhead in 70 streams of the Clearwater, Snake, and Salmon River drainages and from our five hatchery stocks. The DNA analysis was subcontracted to Dr. Jennifer Nielsen, Alaska Biological Science Center, Anchorage, and will be completed in 2001.« less

Population dynamics and potential of fisheries stock enhancement: practical theory for assessment and policy analysis.

PubMed

Lorenzen, Kai

2005-01-29

The population dynamics of fisheries stock enhancement, and its potential for generating benefits over and above those obtainable from optimal exploitation of wild stocks alone are poorly understood and highly controversial. I review pertinent knowledge of fish population biology, and extend the dynamic pool theory of fishing to stock enhancement by unpacking recruitment, incorporating regulation in the recruited stock, and accounting for biological differences between wild and hatchery fish. I then analyse the dynamics of stock enhancement and its potential role in fisheries management, using the candidate stock of North Sea sole as an example and considering economic as well as biological criteria. Enhancement through release of recruits or advanced juveniles is predicted to increase total yield and stock abundance, but reduce abundance of the naturally recruited stock component through compensatory responses or overfishing. Economic feasibility of enhancement is subject to strong constraints, including trade-offs between the costs of fishing and hatchery releases. Costs of hatchery fish strongly influence optimal policy, which may range from no enhancement at high cost to high levels of stocking and fishing effort at low cost. Release of genetically maladapted fish reduces the effectiveness of enhancement, and is most detrimental overall if fitness of hatchery fish is only moderately compromised. As a temporary measure for the rebuilding of depleted stocks, enhancement cannot substitute for effort limitation, and is advantageous as an auxiliary measure only if the population has been reduced to a very low proportion of its unexploited biomass. Quantitative analysis of population dynamics is central to the responsible use of stock enhancement in fisheries management, and the necessary tools are available.

Antimicrobial effects of essential oils of Cinnamosma fragrans on the bacterial communities in the rearing water of Penaeus monodon larvae.

PubMed

Sarter, Samira; Randrianarivelo, Roger; Ruez, Philippe; Raherimandimby, Marson; Danthu, Pascal

2011-04-01

Farmed shrimps are vectors of various Vibrio species that are considered a potential health hazard. Previous study has shown that Vibrio parahaemolyticus, Vibrio vulnificus, and Vibrio alginolyticus dominated in the water and larval samples of shrimp hatchery (Randrianarivelo et al. 2010 ). The effects of two essential oils (EOs) of Cinnamosma fragrans, an endemic plant to Madagascar (B8: linalool-type and B143: 1,8-cineole-type), were determined on the total heterotrophic aerobic bacteria and the Vibrio concentrations in the rearing water of Penaeus monodon hatchery. The assays took place in OSO Farming's shrimp hatchery in Madagascar. EOs were directly added to the water tank. The bacterial concentrations of water tank were assessed on marine agar and thiosulfate citrate bile sucrose agar. The larvae culture corresponded to four replicates each of B8, B143, erythromycin (E), and control (oil and antibiotic free). The bacterial concentration of the rearing water in B8, B143, and antibiotic (E) tanks were significantly lower (p < 0.05) than in the control. Further, there was no significant difference (p > 0.05) between the three treatments B8, B143, and E. This study demonstrated that both EOs of C. fragrans, like antibiotic, inhibited bacterial growth in the rearing water of P. monodon larvae. The potential of C. fragrans EO to control the bacterial load in in vivo conditions of P. monodon hatchery makes it a relevant option for producers to minimize risk of Vibrio growth in the rearing water of larvae, which is the primary source of colonization of shrimp larvae.

Appendices of an appraisal for the use of geothermal energy in state-owned buildings in Colorado. Section D. Durango

DOE Office of Scientific and Technical Information (OSTI.GOV)

Meyer, R.T.; Coe, B.A.; Dick, J.D.

1981-01-01

Four state-owned building complexes ahve been evaluated within the city of Durango: The State Fish Hatchery, Fort Lewis College, new State Highway Department Building near the Bodo Industrial Park, and the National Guard Building. Three of the state facilities in Durango are evaluated for geothermal systems on thea ssumption of taking geothermal water from a trunk-line originating at the area northof Durango: State Fish Hatchery, Fort Lewis College and new State Highway Department Building. The National Guard Building is evaluated on the basis of a water-to-air heat pump, with warm water derived from a hypothetical shallow aquifer immediately below themore » building site. Two geothermal options were separately evaluated for Fort Lewis College: a central heat exchanger system for delivery of 145/sup 0/F heating water to the campus buildings and a central heat pump system for boosting the heating water to 200/sup 0/F prior to delivery to the buildings; both systems require the installation of a distribution piping network for the entire campus area. Retrofit engineering for the State Fish Hatchery provides for the installation of a small scale central distribution piping system to the several buildings, a central heat excanger coupled to the geothermal trunk line, and the use of various fan coil and unit heaters for space heating. An option is provided for discharge-mixing the geothermal water into the fish ponds and runs in order to raise the hatchery water temperature a couple degrees for increasing fish production and yield. The heating system for the new State Highway Department Building is redesigned to replace the natural-gas-fired forced-air furnaces with a heat exchanger, hot water fan coils and unit heaters.« less

Who's your momma? Recognizing maternal origin of juvenile steelhead using injections of strontium chloride to create transgenerational marks

USGS Publications Warehouse

Shippentower, Gene E.; Schreck, Carl B.; Heppell, Scott A.

2011-01-01

We sought to determine whether a strontium chloride injection could be used to create a transgenerational otolith mark in steelhead Oncorhynchus mykiss. Two strontium injection trials and a survey of strontium: calcium (Sr:Ca) ratios in juvenile steelhead from various steelhead hatcheries were conducted to test the feasibility of the technique. In both trials, progeny of fish injected with strontium had significantly higher Sr:Ca ratios in the primordial region of their otoliths, as measured by an electron wavelength dispersive microprobe. In trial 1, the 5,000-mg/L treatment level showed that 56.8% of the otoliths were correctly classified, 12.2% being misclassified as belonging to the 0-mg/L treatment. In trial 2, the 20,000-mg/L treatment level showed that 30.8% of the otoliths were correctly classified, 13.5% being misclassified as belonging to the 0-mg/L treatment. There were no differences in the fertilization rates of eggs or survival rates of fry between the treatment and control groups. The Sr:Ca ratios in otoliths collected from various hatchery populations of steelhead varied and were greater than those found in otoliths from control fish in both of our injection trials. This study suggests that the marking technique led to recognizable increases in Sr:Ca ratios in some otoliths collected from fry produced by injected females. Not all progeny showed such increases, however, suggesting that the method holds promise but requires further refinement to reduce variation. Overall, there was a correct classification of about 40% across all treatments and trials; the variation in Sr:Ca ratios found among experimental trials and hatcheries indicates that care must be taken if the technique is employed where fish from more than one hatchery could be involved.

Estimates of lake trout (Salvelinus namaycush) diet in Lake Ontario using two and three isotope mixing models

USGS Publications Warehouse

Colborne, Scott F.; Rush, Scott A.; Paterson, Gordon; Johnson, Timothy B.; Lantry, Brian F.; Fisk, Aaron T.

2016-01-01

Recent development of multi-dimensional stable isotope models for estimating both foraging patterns and niches have presented the analytical tools to further assess the food webs of freshwater populations. One approach to refine predictions from these analyses is to include a third isotope to the more common two-isotope carbon and nitrogen mixing models to increase the power to resolve different prey sources. We compared predictions made with two-isotope carbon and nitrogen mixing models and three-isotope models that also included sulphur (δ34S) for the diets of Lake Ontario lake trout (Salvelinus namaycush). We determined the isotopic compositions of lake trout and potential prey fishes sampled from Lake Ontario and then used quantitative estimates of resource use generated by two- and three-isotope Bayesian mixing models (SIAR) to infer feeding patterns of lake trout. Both two- and three-isotope models indicated that alewife (Alosa pseudoharengus) and round goby (Neogobius melanostomus) were the primary prey items, but the three-isotope models were more consistent with recent measures of prey fish abundances and lake trout diets. The lake trout sampled directly from the hatcheries had isotopic compositions derived from the hatchery food which were distinctively different from those derived from the natural prey sources. Those hatchery signals were retained for months after release, raising the possibility to distinguish hatchery-reared yearlings and similarly sized naturally reproduced lake trout based on isotopic compositions. Addition of a third-isotope resulted in mixing model results that confirmed round goby have become an important component of lake trout diet and may be overtaking alewife as a prey resource.

Development of a Systemwide Program: Stepwise Implementation of a Predation Index, Predator Control Fisheries and Evaluation Plan in the Columbia River Basin, Volume 1, 1992 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ward, David L.

1994-06-01

Results of the second year are reported of a basinwide program to harvest northern squawfish in an effort to reduce mortality due to squawfish predation on juvenile salmonids during their migration from natal streams to the ocean. Six papers are included in this report. They are entitled: feasibility investigation of a commercial longline fishery for northern squawfish in the Columbia River downstream from Bonneville dam; evaluation of the northern squawfish sport-reward fishery in the Columbia and Snake Rivers; controlled angling for northern squawfish at selected dams on the Columbia and Snake Rivers in 1992; evaluation of harvest technology for squawfishmore » control in Columbia River reservoirs; effectiveness of predator-removal for protecting juvenile fall chinook salmon released from Bonneville Hatchery; and Northern squawfish sport-reward payments.« less

Nez Perce Tribal Hatchery Project : Combined-Planning & Design and Operations & Maintenance Reports, 2000 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Larson, Roy Edward; Walker, Grant W.

2002-12-31

Nez Perce Tribal Hatchery (NPTH) Year-2000 Combined Maintenance and Operations (O&M) and Planning and Design (P&D) contract is hereby completed based on this annual report patterned after the Statement of Work (SOW) for the project as contracted with Bonneville Power Administration. Primary project activities focused on completion of the Northwest Power Planning Council Step-3 process that: (1) Accepted final design, (2) Authorized a capital construction amount of $16,050,000, and (3) Authorized contractor selection, and (4) Provided construction site dedication, and (5) Implemented construction activities over an anticipated 2-year period of July 2000 through October 2002.

Parasite burdens in experimental families of coho salmon.

USGS Publications Warehouse

Yasutake, W.T.; McIntyre, J.D.; Hemmingsen, A.R.

1986-01-01

We examined the possibility that parasites affect survival rates of anadromous hatchery coho salmon Oncorhynchus kisutch during their period in the wild. Survival was estimated from the rates at which adults returned to the hatchery. The frequency of infection of heart tissue by metacercariae of Nanophyetus sp. was higher in individuals from families with relatively high survival. Various degrees of parasitic and bacterial infection were observed in all groups. We frequently saw extensive infection and tissue reaction to trophozoites of Ceratomyxa sp. (probably C. shasta) in the apparent absence of spores, suggesting that the clinical method now used to determine the presence of Ceratomyxa infection needs to be reassessed.

Humpback whales feed on hatchery-released juvenile salmon

PubMed Central

Straley, Janice M.; McPhee, Megan V.; Atkinson, Shannon; Reifenstuhl, Steve

2017-01-01

Humpback whales are remarkable for the behavioural plasticity of their feeding tactics and the diversity of their diets. Within the last decade at hatchery release sites in Southeast Alaska, humpback whales have begun exploiting juvenile salmon, a previously undocumented prey. The anthropogenic source of these salmon and their important contribution to local fisheries makes the emergence of humpback whale predation a concern for the Southeast Alaska economy. Here, we describe the frequency of observing humpback whales, examine the role of temporal and spatial variables affecting the probability of sighting humpback whales and describe prey capture behaviours at five hatchery release sites. We coordinated twice-daily 15 min observations during the spring release seasons 2010–2015. Using logistic regression, we determined that the probability of occurrence of humpback whales increased after releases began and decreased after releases concluded. The probability of whale occurrence varied among release sites but did not increase significantly over the 6 year study period. Whales were reported to be feeding on juvenile chum, Chinook and coho salmon, with photographic and video records of whales feeding on coho salmon. The ability to adapt to new prey sources may be key to sustaining their population in a changing ocean. PMID:28791145

Humpback whales feed on hatchery-released juvenile salmon.

PubMed

Chenoweth, Ellen M; Straley, Janice M; McPhee, Megan V; Atkinson, Shannon; Reifenstuhl, Steve

2017-07-01

Humpback whales are remarkable for the behavioural plasticity of their feeding tactics and the diversity of their diets. Within the last decade at hatchery release sites in Southeast Alaska, humpback whales have begun exploiting juvenile salmon, a previously undocumented prey. The anthropogenic source of these salmon and their important contribution to local fisheries makes the emergence of humpback whale predation a concern for the Southeast Alaska economy. Here, we describe the frequency of observing humpback whales, examine the role of temporal and spatial variables affecting the probability of sighting humpback whales and describe prey capture behaviours at five hatchery release sites. We coordinated twice-daily 15 min observations during the spring release seasons 2010-2015. Using logistic regression, we determined that the probability of occurrence of humpback whales increased after releases began and decreased after releases concluded. The probability of whale occurrence varied among release sites but did not increase significantly over the 6 year study period. Whales were reported to be feeding on juvenile chum, Chinook and coho salmon, with photographic and video records of whales feeding on coho salmon. The ability to adapt to new prey sources may be key to sustaining their population in a changing ocean.

Molecular epidemiology of infectious hematopoietic necrosis virus reveals complex virus traffic and evolution within southern Idaho aquaculture

USGS Publications Warehouse

Troyer, R.M.; Kurath, G.

2003-01-01

Infectious hematopoietic necrosis virus (IHNV) is a rhabdovirus which infects salmon and trout and may cause disease with up to 90% mortality. In the Hagerman Valley of Idaho, IHNV is endemic or epidemic among numerous fish farms and resource mitigation hatcheries. A previous study characterizing the genetic diversity among 84 IHNV isolates at 4 virus-endemic rainbow trout farms indicated that multiple lineages of relatively high diversity co-circulated at these facilities (Troyer et al. 2000 J Gen Virol. 81:2823-2832). We tested the hypothesis that high IHNV genetic diversity and co-circulating lineages are present in aquaculture facilities throughout this region. In this study, 73 virus isolates from 14 rainbow trout farms and 3 state hatcheries in the Hagerman Valley, isolated between 1978 and 1999, were genetically characterized by sequence analysis of a 303 nucleotide region of the glycoprotein gene. Phylogenetic and epidemiological analyses showed that multiple IHNV lineages co-circulate in a complex pattern throughout private trout farms and state hatcheries in the valley. IHNV maintained within the valley appears to have evolved significantly over the 22 yr study period.

Comparative survival and growth of Atlantic salmon from egg stocking and fry releases

USGS Publications Warehouse

Johnson, James H.

2004-01-01

First summer survival and subsequent growth of Atlantic salmon Salmo salar planted as eggs and fry in a tributary of Cayuga Lake, New York, were examined for 3 years. Atlantic salmon were planted in December 1999-2001 in 20 Whitlock-Vibert (W-V) egg incubators, each containing 300 eyed eggs. The following May, 500 fin-clipped Atlantic salmon fry were released in the same stream section. In autumn, a backpack electroshocker was used to capture fry to assess survival and growth. Mean survival was significantly greater for fry (27.9%) than eggs (0.8%). In autumn, mean length was significantly greater for Atlantic salmon released as fry (90.1 mm) than those planted as eggs (76.2 mm), probably owing to accelerated growth in the hatchery caused by warmer water temperatures (i.e., hatchery, 9.4A?C; stream, 5.1A?C). Releasing Atlantic salmon fry in May was nearly 11 times more costly in terms of hatchery effort than was releasing eggs in December. Although the survival of Atlantic salmon eggs in W-V incubators was low, when considering production costs, the use of egg plantings may warrant consideration under certain restoration or enhancement situations.

Hungry Horse Dam Fisheries Mitigation; Kokanee Stocking and Monitoring in Flathead Lake, 1996 Progress Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carty, Daniel; Knoetek, W. Ladd

1997-06-01

Kokanee salmon Oncorhynchus nerka were introduced into Flathead Lake in 1916. The kokanee population declined in the 1960s and 1970s, and kokanee disappeared from Flathead Lake in the late 1980s. Their disappearance has been attributed to the long-term effects of the construction and operation of Hungry Horse and Kerr dams, excessive harvest by anglers, and changes in the lake food web induced by the introduction of opossum shrimp Mysis relicta. Attempts to reestablish kokanee in the Flathead Lake ecosystem between 1988 and 1991 were unsuccessful. In 1991, Montana Fish, Wildlife and Parks (MFWP) and the Confederated Salish and Kootenai Tribesmore » (CSKT) wrote a mitigation plan to restore kokanee to Flathead Lake. In 1993, MFWP, CSKT, and the U.S. Fish and Wildlife Service wrote a mitigation implementation plan that initiated a 5-year test program to use hatchery-reared fish to reintroduce kokanee to the lake. Stocking hatchery-reared kokanee into Flathead Lake began in 1993; the 5-year {open_quotes}kokanee test{close_quotes} started in 1994 and is scheduled to continue through 1998. The annual stocking objective is 1 million yearling kokanee (6-8 in long). Criteria used to evaluate the success of the 5-year test are (1) 30% survival of kokanee 1 year after stocking, (2) yearling-to-adult survival of 10%, and (3) annual harvest of 50,000 kokanee ({ge} 11 in) and fishing effort {ge} 100,000 angler hours.« less

Size selection from fishways and potential evolutionary responses in a threatened Atlantic salmon population

USGS Publications Warehouse

Maynard, George A.; Kinnison, M.T.; Zydlewski, Joseph D.

2017-01-01

The evolutionary effects of harvest on wild fish populations have been documented around the world; however, sublethal selective pressures can also cause evolutionary changes in phenotypes. For migratory fishes, passage facilities may represent instances of nonlethal selective pressure. Our analysis of 6 years of passage data suggests that certain fish passage facilities on the Penobscot River have been exerting selective pressure against large-bodied, anadromous Atlantic salmon (Salmo salar). At the second and third dams in the river, a 91-cm salmon was 21%–27% and 12%–16% less likely to pass than a 45-cm salmon, respectively. Fish size positively influences egg survival and number and is a heritable trait. Therefore, in a wild-reproducing population, exclusion of large fish from spawning areas may have population-level impacts. In the Penobscot River, most returning adults derive from a hatchery program that collects its broodstock after passing the first dam in the river. Analysis of fork lengths of salmon returning to the Penobscot River from 1978 to 2012 provided mixed support for evolution of size at maturity in different age classes in a pattern that may be expected from interactions with conservation hatchery operations. Additionally, slow-maturing and iteroparous individuals that represent the largest salmon size classes were essentially lost from the population during that time, and Penobscot River fish have shorter fork lengths at maturity than Atlantic salmon in undammed systems.

Yakima/Klickitat Fisheries Project; Washington Department of Fish and Wildlife Policy/Technical Involvement and Planning, 2001-2002 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Easterbrooks, John A.; Pearsons, Todd N.

2003-03-01

The Yakima/Klickitat Fisheries Project (YKFP) is a supplementation project sponsored by the Northwest Power Planning Council (Columbia River Basin Fish and Wildlife Program 1994, Measure 7.4K). The objectives of the YKFP are: (1) to test the hypothesis that new supplementation techniques can be used in the Yakima River Basin to increase natural production and to improve harvest opportunities while maintaining the long-term genetic fitness of the wild and native salmonid populations and keeping adverse ecological interactions within acceptable limits (Yakima Fisheries Project Final Environment Impact Statement, 1996); (2) provide knowledge about the use of supplementation, so that it may bemore » used to mitigate effects on anadromous fisheries throughout the Columbia River Basin; (3) to maintain and improve the quantity and productivity of salmon and steelhead habitat, including those areas made accessible by habitat improvements; (4) to ensure that Project implementation remains consistent with the Council's Fish and Wildlife Program; and (5) to implement the Project in a prudent and environmentally sound manner. Current YKFP operations have been designed to test the principles of supplementation (Busack et al. 1997). The Project's experimental design has focused on the following critical uncertainties affecting supplementation: (1) The survival and reproductive success of hatchery fish after release from the hatchery; (2) The impacts of hatchery fish as they interact with non-target species and stocks; and, (3) The effects of supplementation on the long-term genetic fitness of fish stocks. The YKFP endorses an adaptive management policy applied through a project management framework as described in the Yakima/Klickitat Fisheries Project Planning Status Report (1995), Fast and Craig (1997), Clune and Dauble 1991. The project is managed by a Policy Group consisting of a representative of the Yakama Nation (YN, lead agency) and a representative of the Washington Department of Fish and Wildlife (WDFW). The functions of the parties are described in an MOU between the YN and the WDFW. A Scientific and Technical Advisory Committee (STAC) consisting of one representative from each management entity reports to the Policy Group and provides technical input on policy and other issues. Additional committee's, such as the Monitoring Implementation and Planning Team (MIPT), serve as the discretion of STAC. The Policy Group and STAC meet periodically (usually monthly) to conduct the business of the YKFP. Although the YKFP is an all stocks initiative (BPA 1996), most effort to date has been directed at spring chinook salmon and coho salmon. This report is a compilation of the year's activities between August 1, 2001 and July 31, 2002. All findings should be considered preliminary until data collection is completed or the information is published in a peer-reviewed journal.« less

Post-Release Performance of Natural and Hatchery Subyearling Fall Chinook Salmon in the Snake and Clearwater Rivers.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Connor, William P.

2008-04-01

In 2006, we continued a multi-year study to compare smolt-to-adult return rate (SAR) ratios between two groups of Snake River Basin fall Chinook salmon Oncorhynchus tshawytscha that reached the sea through a combination of either (1) transportation and inriver migration or (2) bypass and inriver migration. We captured natural subyearlings rearing along the Snake and Clearwater rivers and implanted them with passive integrated transponder (PIT) tags, but knew in advance that sample sizes of natural fish would not be large enough for precise comparisons of SAR ratios. To increase sample sizes, we also cultured Lyons Ferry Hatchery subyearlings under amore » surrogate rearing strategy, implanted them with PIT tags, and released them into the Snake and Clearwater rivers to migrate seaward. The surrogate rearing strategy involved slowing growth at Dworshak National Fish Hatchery to match natural subyearlings in size at release as closely as possible, while insuring that all of the surrogate subyearlings were large enough for tagging (i.e., 60-mm fork length). Surrogate subyearlings were released from late May to early July 2006 to coincide with the historical period of peak beach seine catch of natural parr in the Snake and Clearwater rivers. We also PIT tagged a large representative sample of hatchery subyearlings reared under a production rearing strategy and released them into the Snake and Clearwater rivers in 2006 as part of new research on dam passage experiences (i.e., transported from a dam, dam passage via bypass, dam passage via turbine intakes or spillways). The production rearing strategy involved accelerating growth at Lyons Ferry Hatchery, sometimes followed by a few weeks of acclimation at sites along the Snake and Clearwater rivers before release from May to June. Releasing production subyearlings has been suggested as a possible alternative for making inferences on the natural population if surrogate fish were not available. Smoltto-adult return rates are not reported here, but will be presented in future reports written after workshops and input by federal, state, and tribal researchers. In this report, we compared the postrelease performance of natural subyearlings to the postrelease performance of surrogate and production subyearlings. We made this comparison to help the fisheries community determine which of the two hatchery rearing strategies produced fish that were more similar to natural subyearlings. We compared the following attributes of postrelease performance (1) detection dates at dams, (2) detections during the implementation of summer spill, (3) travel times, (4) migrant sizes, and (5) the joint probability of migration and survival. Overall, we found that postrelease performance was more similar between natural and surrogate subyearlings than between natural and production subyearlings. Further, the similarity between natural and surrogate subyearlings was greater in 2006 than in 2005, partly as the result of changes in incubation and early rearing practices we recommended based on 2005 results.« less

Research, monitoring, and evaluation of emerging issues and measures to recover the Snake River fall Chinook salmon ESU, 1/1/2014 - 12/31/2014

USGS Publications Warehouse

Connor, William P.; Mullins, Frank L.; Tiffan, Kenneth F.; Perry, Russell W.; Erhardt, John M.; St John, Scott J.; Bickford, Brad; Rhodes, Tobyn N.

2015-01-01

The portion of the Snake River fall Chinook Salmon Oncorhynchus tshawytscha ESU that spawns upstream of Lower Granite Dam transitioned from low to high abundance during 1992–2014 in association with U.S. Endangered Species Act recovery efforts and other Federally mandated actions. This annual report focuses on (1) numeric and habitat use responses by natural- and hatchery-origin spawners, (2) phenotypic and numeric responses by natural-origin juveniles, and (3) predator responses in the Snake River upper and lower reaches as abundance of adult and juvenile fall Chinook Salmon increased. Spawners have located and used most of the available spawning habitat and that habitat is gradually approaching redd capacity. Timing of spawning and fry emergence has been relatively stable; whereas the timing of parr dispersal from riverine rearing habitat into Lower Granite Reservoir has become earlier as apparent abundance of juveniles has increased. Growth rate (g/d) and dispersal size of parr also declined as apparent abundance of juveniles increased. Passage timing of smolts from the two Snake River reaches has become earlier and downstream movement rate faster as estimated abundance of fall Chinook Salmon smolts in Lower Granite Reservoir has increased. In 2014, consumption of subyearlings by Smallmouth Bass was highest in the upper reach which had the highest abundance of Bass. With a few exceptions, predation tended to decrease seasonally from April through early July. A release of hatchery fish in mid-May significantly increased subyearling consumption by the following day. We estimated that over 600,000 subyearling fall Chinook Salmon were lost to Smallmouth Bass predation along the free-flowing Snake River in 2014. More information on predation is presented in Appendix A.3 (page 51). These findings coupled with stock-recruitment analyses presented in this report provide evidence for density-dependence in the Snake River reaches and in Lower Granite Reservoir that was influenced by the expansion of the recovery program. The long-term goal is to use the information covered here in a comprehensive modeling effort to conduct action effectiveness and uncertainty research and to inform fish population, hydrosystem, harvest, hatchery, and predation and invasive species management RM&E.

Research, monitoring, and evaluation of emerging issues and measures to recover the Snake River fall Chinook salmon ESU, 1/1/2012 – 12/31/2013: Annual report, 1991-029-00

USGS Publications Warehouse

Connor, William P.; Mullins, Frank; Tiffan, Kenneth F.; Perry, Russell W.; Erhardt, John M.; St. John, Scott J.; Bickford, Brad; Rhodes, Tobyn N.

2014-01-01

The portion of the Snake River fall Chinook Salmon Oncorhynchus tshawytscha ESU that spawns upstream of Lower Granite Dam transitioned from low to high abundance during 1992–2014 in association with U.S. Endangered Species Act recovery efforts and other Federally mandated actions. This annual report focuses on (1) numeric and habitat use responses by natural- and hatchery-origin spawners, (2) phenotypic and numeric responses by natural-origin juveniles, and (3) predator responses in the Snake River upper and lower reaches as abundance of adult and juvenile fall Chinook Salmon increased. Spawners have located and used most of the available spawning habitat and that habitat is gradually approaching redd capacity. Timing of spawning and fry emergence has been relatively stable; whereas the timing of parr dispersal from riverine rearing habitat into Lower Granite Reservoir has become earlier as apparent abundance of juveniles has increased. Growth rate (g/d) and dispersal size of parr also declined as apparent abundance of juveniles increased. Passage timing of smolts from the two Snake River reaches has become earlier and downstream movement rate faster as estimated abundance of fall Chinook Salmon smolts in Lower Granite Reservoir has increased. In 2014, consumption of subyearlings by Smallmouth Bass was highest in the upper reach which had the highest abundance of Bass. With a few exceptions, predation tended to decrease seasonally from April through early July. A release of hatchery fish in mid-May significantly increased subyearling consumption by the following day. We estimated that over 600,000 subyearling fall Chinook Salmon were lost to Smallmouth Bass predation along the free-flowing Snake River in 2014. More information on predation is presented in Appendix A.3 (page 51). These findings coupled with stock-recruitment analyses presented in this report provide evidence for density-dependence in the Snake River reaches and in Lower Granite Reservoir that was influenced by the expansion of the recovery program. The long-term goal is to use the information covered here in a comprehensive modeling effort to conduct action effectiveness and uncertainty research and to inform fish population, hydrosystem, harvest, hatchery, and predation and invasive species management RM&E.

Seasonal changes in androgen levels in stream- and hatchery-reared Atlantic salmon parr and their relationship to smolting

USGS Publications Warehouse

Shrimpton, J.M.; McCormick, S.D.

2002-01-01

In stream-reared Atlantic salmon Salmo salar, plasma androgens were significantly greater in mature male parr than immature males and females in October, but had declined by January and did not differ significantly from immature fish throughout the spring. Immature fish in March were significantly larger and had greater gill Na+,K+-ATPase activity than their previously mature counterparts. Bimodal growth distribution was seen in hatchery-reared Atlantic salmon and a proportion of the male fish in the lower mode matured. Plasma testosterone (T) and 11-ketotestosterone (11-KT) were significantly elevated from September to December in mature male (1+ year) parr. In January, plasma androgens had declined in mature males and did not differ significantly from immature fish. By May all the hatchery fish were large enough to smolt and a proportion of the previously mature males had increased gill Na+,K+-ATPase activity. Therefore elevated androgens in the previous autumn do not prevent smolting. Parr with higher plasma T and 11-KT in April and May, that are presumably beginning to mature, had lower gill Na+,K+-ATPase activity, indicating that future maturation and associated increases in androgens may inhibit smolting. ?? 2002 The Fisheries Society of the British Isles. Published by Elsevier Science Ltd. All rights reserved.

Efficacy of iodine for disinfection of Lake Sturgeon eggs from the St. Lawrence River, New York

USGS Publications Warehouse

Chalupnicki, Marc A.; Dittman, Dawn E.; Starliper, Clifford E.; Iwanowicz, Deborah

2014-01-01

Optimal fish husbandry to reduce the risk of disease is particularly important when using wild fish as the source for gametes. The propagation and reestablishment of Lake Sturgeon Acipenser fulvescens in New York waters to become a viable self-sustaining population is considered a high priority by managers. While standard hatchery egg disinfection practices have been used to prevent the transmission of diseases, data on the bacterial loads present on egg surfaces following iodine disinfection is lacking. Our study investigated the bacteria present on the outer surface of Lake Sturgeon eggs and the effectiveness of an iodine disinfection treatment in eliminating bacteria that could pose a threat to egg survival and cause hatchery disease outbreaks. During the springs of 2011–2013, 12 to 41 different species of bacteria were recovered from the outer egg surfaces prior to an iodine treatment; Aeromonas, Pseudomonas, Shewanella, and Chryseobacterium were the most common genera identified. Cohort eggs treated using the standard protocol of a single treatment of 50 mg/L iodine for 30 min resulted in an average of 57.8% reduction in bacterial CFU/g. While this is a significant reduction, bacteria were not completely eliminated and hatchery managers should be aware that pathogens could remain on Lake Sturgeon eggs following the standard iodine disinfection treatment.

Sublethal responses of largemouth bass to parasites and organochlorines

DOE Office of Scientific and Technical Information (OSTI.GOV)

MacRury, N.K.; Johnson, B.M.

1999-05-01

Largemouth bass (Micropterus salmoides) at the Rocky Mountain Arsenal National Wildlife Refuge (RMA) experience chronic organochlorine exposures and parasitism by nematodes (Contracaecum spiculigerum) and digenean flukes (Posthodiplostomum minimum centrarchi). The authors investigated the influences of nematode intensity, fluke intensity, and whole-body organochlorine concentrations on growth of juvenile RMA bass. Lifetime growth, or age-specific lengths, of bass in three RMA lakes were within the range observed for bass in five reference lakes. However, interlake comparisons can be confounded by differing environmental conditions. Therefore, they conducted mesocosm and laboratory studies to compare growth, consumption, and feeding behavior between RMA bass and bassmore » that had little contaminant or parasite exposure. Mean growth rates of RMA bass were 45% lower compared with hatchery bass in experimental ponds. However, regression analysis revealed that parasite and organochlorine burdens were not negatively associated with either short-term growth or age-specific lengths of RMA bass. Hatchery bass growth was likely higher due to their experience with culture pond conditions. In feeding trials, RMA bass exhibited similar food conversion efficiency and consumption rates and significantly elevated feeding activity compared with hatchery bass. This research demonstrates that current parasite and organochlorine loads had benign influences on growth of juvenile RMA bass.« less

Results of a survey of U.S. Fish and Wildlife Service Endangered Species and Ecological Services Field Offices, Refuges, Hatcheries, and Research Centers

USGS Publications Warehouse

Gladwin, Douglas N.; Asherin, Duane A.; Manci, Karen M.

1988-01-01

The National Ecology Research Center (Center), as part of an ongoing research study on the effects of low altitude aircraft operations on fish and wildlife, conducted a survey in January 1987 of all U.S. Fish and Wildlife Service (Service) regional directors, research center directors, Ecological Services and Endangered Species field offices supervisors, refuge manager, and hatchery manager. The objective of the survey was to determine the nature and extent of aircraft-induced impacts on fish and wildlife species, populations, and habitat utilization. The field installation managers and biologists were asked to provide background information or data on fish and wildlife reactions to low-altitude aircraft disturbances, including physiological, behavioral, and reproductive/population effects. Specifically, the survey asked for information such as: (1) observations of animal reaction(s) to aircraft operations, e.g., desert bighorn sheep scare behavior in response to aircraft overflights and hatchery fish seizures and death following intense sonic booms; and instances of areas where aircraft noise is known or believed to be responsible for reduced population size, e.g. areas along heavily used aircraft flight corridors where breeding waterfowl densities are lower than in similar habitat away from the noise area.

Inactivation of infectious hematopoietic necrosis virus by low levels of iodine

USGS Publications Warehouse

Batts, William N.; Landolt, Marsha L.; Winton, James R.

1991-01-01

The fish rhabdovirus infectious hematopoietic necrosis virus (IHNV) was rapidly inactivated by extremely low concentrations of iodine in water. A 99.9% virus reduction was obtained in 7.5 s when virus (105PFU/ml) and iodine (0.1 mg/liter, final concentration) were combined in distilled-deionized or hatchery water. Iodine efficacy decreased at pHs greater than 7.5 or when proteinaceous material was added to the water. Bovine serum albumin blocked iodine inactivation of the virus more effectively than did equal concentrations of fetal bovine serum or river sediment. Sodium thiosulfate effectively neutralized free iodine. Powder, iodophor, and crystalline iodine solutions inactivated IHNV equally. Iodine rapidly inactivated IHNV isolates representing each of the five electropherotypes. Under the conditions used in this study, inactivation was not affected by temperature, salinity, or water hardness. When Dworshak National Fish Hatchery water was continuously treated to provide a free iodine concentration of 0.14 mg/liter, a 7.5-s exposure to iodine was sufficient to inactivate 99.9% of the IHNV. Iodine added to water that contained IHNV prevented infection of rainbow trout (Oncorhynchus mykiss) fry. These results suggest that the waterborne route of IHNV transmission can be blocked by adding low iodine concentrations to the water supplies of hatcheries.

Testing archival tag technology in coho salmon

USGS Publications Warehouse

Nielsen, Jennifer L.; Richards, Philip; Tingey, Thor; Wilson, Derek; Zimmerman, Chris

2004-01-01

Archive tags with temperature and light-geolocation sensors will be monitored for post-smolt coho salmon in Cook Inlet. Light/location relationships specific to the Gulf of Alaska developed under Project 00478 will be applied in this study of movement and migration paths for coho salmon during maturation in ocean environments in Cook Inlet. Salmon for this study will be reared in captivity (at the Alaska Department of Fish and Game hatchery at Fort Richardson) to 1+ year of age (200-250mm) and released in Cook Inlet as part of the department's Ship Creek sport-fishing hatchery release. FY 01 includes pilot studies of tag retention, behavior, and growth for coho in captivity. Ship Creek coho will be tagged mid-May. A spring release experiment in the first year will be contingent on the successful implementation and retention of these tags. Surveys for early jack recoveries will be done at the Ship Creek weir and among sport fishers. Monitoring for adult tag recoveries will be done in the coho commercial fishery in Cook Inlet and the derby sport fishery on Ship Creek. Archive tagged fish will be used to document coho salmon use of marine habitats, migration routes, contribution to the sport fishery, and hatchery/wild interactions for salmon in Cook Inlet.

Reduced fitness of Atlantic salmon released in the wild after one generation of captive breeding

PubMed Central

Milot, Emmanuel; Perrier, Charles; Papillon, Lucie; Dodson, Julian J; Bernatchez, Louis

2013-01-01

Salmonids rank among the most socioeconomically valuable fishes and the most targeted species by stocking with hatchery-reared individuals. Here, we used molecular parentage analysis to assess the reproductive success of wild- and hatchery-born Atlantic salmon over three consecutive years in a small river in Québec. Yearly restocking in this river follows a single generation of captive breeding. Among the adults returning to the river to spawn, between 11% and 41% each year were born in hatchery. Their relative reproductive success (RRS) was nearly half that of wild-born fish (0.55). RRS varied with life stage, being 0.71 for fish released at the fry stage and 0.42 for fish released as smolt. The lower reproductive success of salmon released as smolt was partly mediated by the modification of the proportion of single-sea-winter/multi-sea-winter fish. Overall, our results suggest that modifications in survival and growth rates alter the life-history strategies of these fish at the cost of their reproductive success. Our results underline the potential fitness decrease, warn on long-term evolutionary consequences for the population of repeated stocking and support the adoption of more natural rearing conditions for captive juveniles and their release at a younger stage, such as unfed fry. PMID:23745139

Comparative Survival Rate Study (CSS) of Hatchery PIT-tagged Chinook; Oregon Department of Fish and Wildlife, Annual Report 2002-2003.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jonasson, Brian

2004-02-01

We PIT-tagged juvenile spring chinook salmon reared at Lookingglass Hatchery in October 2002 as part of the Comparative Survival Rate Study (CSS) for migratory year (MY) 2003. We tagged 20,950 Imnaha stock spring chinook salmon, and after mortality and tag loss, we allowed the remaining 20,904 fish to leave the acclimation pond at our Imnaha River satellite facility beginning 1 April 2003 to begin their seaward migration. The fish remaining in the pond were forced out on 15 April 2003. We tagged 20,820 Catherine Creek stock captive and conventional brood progeny spring chinook salmon, and after mortality and tag loss,more » we allowed the remaining 20,628 fish to leave the acclimation ponds at our Catherine Creek satellite facility beginning during two acclimation periods. The volitional release for the early acclimation group began 12 March 2003, and all remaining fish were forced out of the ponds on 23 March 2003. The volitional release for the late acclimation group began 31 March 2003, and all remaining fish were forced out of the ponds on 14 April 2003. We estimated survival rates, from release to Lower Granite Dam in MY 2003, for three stocks of hatchery spring chinook salmon tagged at Lookingglass Hatchery to determine their relative migration performance. Survival rates for the Imnaha River, Lostine River, and Catherine Creek stocks were 0.714, 0.557, and 0.350, respectively. We PIT-tagged 20,944 BY 2002 Imnaha River stock and 20,980 BY 2002 Catherine Creek stock captive and conventional brood progeny in October and November 2003 as part of the CSS for MY 2004. From tagging to January 28, 2004, the rates of mortality and tag loss for Imnaha River stock were 0.16% and 0.04%, respectively. Catherine Creek stock, during the same period, had rates of mortality and tag loss of 0.19% and 0.06%, respectively.« less

A survey of chemical constituents in National Fish Hatchery fish feed

USGS Publications Warehouse

Maule, Alec G.; Gannam, Ann; Davis, Jay

2006-01-01

Recent studies have demonstrated that various fish feeds contain significant concentrations of contaminants, many of which can bioaccumulate and bioconcentrate in fish. It appears that numerous organochlorine (OC) contaminants are present in the fish oils and fish meals used in feed manufacture, and some researchers speculate that all fish feeds contain measurable levels of some contaminants. To determine the presence and concentration of contaminants in feeds used in National Fish Hatcheries managed by the U.S. Fish & Wildlife Service, we systematically collected samples of feed from 11 hatcheries that raise cold-water species, and analyzed them for a suite of chemical contaminants. All of the samples (collected from October 2001 to October 2003) contained measurable concentrations of at least one dioxin, furan, polychlorinated biphenyl (PCB) congener, or dichlorodiphenyltrichloroethane (DDT) metabolite. All samples which were assayed for all contaminants contained one or more of those classes of compounds and most contained more than one; dioxin was detected in 39 of the 55 samples for which it was assayed, 24 of 55 contained furans and 24 of 55 samples contained DDT or its metabolites. There with 10- to 150-fold differences in the range in concentrations of the additive totals for PCBs, dioxins, furans and DDT. Although PCBs were the most commonly detected contaminant in our study (all samples in which it was assayed), the concentrations (range: 0.07 to 10.46 ng g·1 wet weight) were low compared to those reported previously. In general, we also found lower levels of organochlorine contaminants than have been reported previously in fish feed. Perhaps most notable is the near absence of OC pesticides~xcept for DDT (and its metabolites) and just two samples containing benzene hexachloride (Lindane). While contaminant concentrations were generally low, the ecological impacts can not be determined without a measure of the bioaccumulation of these compounds in the fish and the fate of these compounds after the fish are released from the hatcheries.

Survival of hatchery-reared lake trout stocked near shore and off shore in Lake Ontario

USGS Publications Warehouse

Elrod, Joseph H.

1997-01-01

Establishing a stock of mature, hatchery-reared fish is necessary to restore a self-sustaining population of lake trout Salvelinus namaycush in Lake Ontario. Stocking fish off shore rather than near shore to reduce predation on these fish by large lake trout or piscivorous birds may enhance survival of hatchery-reared fish and accelerate establishment of a population of adults. Results of an earlier study did not support routinely stocking fish off shore by helicopter in Lake Ontario, but stresses associated with helicopter stocking suggested another method of transporting fish off shore might enhance survival. I conducted this study to determine whether stocking lake trout off shore by barge would enhance first-year survival. Two lots of yearling lake trout were stocked at each of four locations in Lake Ontario in May 1992. One lot was stocked from shore, and an identical lot was transported by barge 3.4–10.4 km off shore of nearshore locations and stocked in water 46–52 m deep. Fish were recovered during trawl, gillnet, and creel surveys in 1992–1996. First-year survival of lake trout stocked off shore tended to be better than that of fish stocked near shore. Predation by double-crested cormorantsPhalacrocorax auritus likely affected survival of fish stocked near shore at two locations, 7 and 37 km, respectively, from a nesting colony of 5,443 pairs of double-crested cormorants. Predation by large lake trout remains a viable hypothesis, which explains, at least partially, lower survival of lake trout stocked near shore at two other locations. Stocking lake trout off shore of traditional nearshore stocking sites likely will enhance first-year survival of hatchery-reared fish and promote accumulation of an adult population, especially for those occassions where nearshore stocking locations are near nesting colonies of double-crested cormorants.

Restitution and genetic differentiation of salmon populations in the southern Baltic genotyped with the Atlantic salmon 7K SNP array.

PubMed

Poćwierz-Kotus, Anita; Bernaś, Rafał; Kent, Matthew P; Lien, Sigbjørn; Leliűna, Egidijus; Dębowski, Piotr; Wenne, Roman

2015-05-06

Native populations of Atlantic salmon in Poland, from the southern Baltic region, became extinct in the 1980s. Attempts to restitute salmon populations in Poland have been based on a Latvian salmon population from the Daugava river. Releases of hatchery reared smolts started in 1986, but to date, only one population with confirmed natural reproduction has been observed in the Slupia river. Our aim was to investigate the genetic differentiation of salmon populations in the southern Baltic using a 7K SNP (single nucleotide polymorphism) array in order to assess the impact of salmon restitution in Poland. One hundred and forty salmon samples were collected from: the Polish Slupia river including wild salmon and individuals from two hatcheries, the Swedish Morrum river and the Lithuanian Neman river. All samples were genotyped using an Atlantic salmon 7K SNP array. A set of 3218 diagnostic SNPs was used for genetic analyses. Genetic structure analyses indicated that the individuals from the investigated populations were clustered into three groups i.e. one clade that included individuals from both hatcheries and the wild population from the Polish Slupia river, which was clearly separated from the other clades. An assignment test showed that there were no stray fish from the Morrum or Neman rivers in the sample analyzed from the Slupia river. Global FST over polymorphic loci was high (0.177). A strong genetic differentiation was observed between the Lithuanian and Swedish populations (FST = 0.28). Wild juvenile salmon specimens that were sampled from the Slupia river were the progeny of fish released from hatcheries and, most likely, were not progeny of stray fish from Sweden or Lithuania. Strong genetic differences were observed between the salmon populations from the three studied locations. Our recommendation is that future stocking activities that aim at restituting salmon populations in Poland include stocking material from the Lithuanian Neman river because of its closer geographic proximity.

Electrofishing mark-recapture and depletion methodologies evoke behavioral and physiological changes in cutthroat trout

USGS Publications Warehouse

Mesa, M. G.; Schreck, C.B.

1989-01-01

We examined the behavioral and physiological responses of wild and hatchery-reared cutthroat trout Oncorhynchus clarki subjected to a single electroshock, electroshock plus marking, and multiple electroshocks in natural and artificial streams. In a natural stream, cutthroat trout released after capture by electrofishing and marking showed distinct behavioral changes: fish immediately sought cover, remained relatively inactive, did not feed, and were easily approached by a diver. An average of 3–4 h was required for 50% of the fish to return to a seemingly normal mode of behavior, although responses varied widely among collection sites. Using the depletion method, we observed little change in normal behavior offish remaining in the stream section (i.e., uncaptured fish) after successive passes with electrofishing gear. In an artificial stream, hatchery-reared and wild cutthroat trout immediately decreased their rates of feeding and aggression after they were electroshocked and marked. Hatchery fish generally recovered in 2–3 h; wild fish required at least 24 h to recover. Analysis of feeding and aggression data by hierarchical rank revealed no distinct recovery trends among hatchery fish of different ranks; among wild cutthroat trout, however, socially dominant fish seemed to recover faster than intermediate and subordinate fish. Physiological indicators of stress (plasma cortisol and blood lactic acid) increased significantly in cutthroat trout subjected to electroshock plus marking or single or multiple electroshocks. As judged by the magnitude of the greatest change in cortisol and lactate, multiple electroshocks elicited the most severe stress response; however, plasma concentrations of both substances had returned to unstressed control levels by 6 h after treatment. It was evident that electrofishing and the procedures involved with estimating fish population size elicited a general stress response that was manifested not only physiologically but also behaviorally. These responses may affect the accuracy of population size estimates by violating key assumptions of the methods, especially the assumption of equal catchability offish.

Prevalence and characterization of multidrug-resistant (type ACSSuT) Salmonella enterica serovar Typhimurium strains in isolates from four gosling farms and a hatchery farm.

PubMed

Yu, Chang-You; Chou, Shih-Jen; Yeh, Chia-Ming; Chao, Maw-Rong; Huang, Kwo-Ching; Chang, Yung-Fu; Chiou, Chien-Shun; Weill, Francois-Xavier; Chiu, Cheng-Hsun; Chu, Chi-Hong; Chu, Chishih

2008-02-01

Salmonella enterica serovar Typhimurium strains of phage types DT104 and U302 are often resistant to ampicillin, chloramphenicol, streptomycin, sulfonamides, and tetracycline (the ACSSuT resistance type) and are major zoonotic pathogens. Increased consumption of goose meat may enhance the risk of transferring S. enterica serovar Typhimurium and other enteric pathogens from geese to human due to the consumption of meats from infected geese or improper preparation of meats. Therefore, we characterized S. enterica serovar Typhimurium strains isolated from four goose farms (farms A, B, C, and D) and one hatchery farm (farm E) to determine the epidemic and genetic differences among them. Antibiotic susceptibility tests and multiplex PCR confirmed that 77.6% (52/67) of strains were ACSSuT strains isolated from farms A, C, and E. Antibiotic-susceptible strains were isolated mostly from farm B, and no strain was observed in farm D. All ACSSuT strains harbored a 94.7-kb virulence plasmid and contained one 1.1-kb conserved segment identical to that of Salmonella genomic island 1. Four genotypes were determined among these S. enterica serovar Typhimurium isolates by pulsed-field gel electrophoresis analysis of XbaI-digested DNA fragments. Most isolates (85.29%; 29/34) of major genotype Ib were ACSSuT strains isolated mainly from goslings of farm C and egg membranes of farm E, a hatchery farm, suggesting that S. enterica serovar Typhimurium strains in isolates from goslings might originate from its hatchery, from the egg membranes to the gosling fluff after hatching. Multiple phage types, types 8, 12, U283, DT104, and U302, were identified. In conclusion, geese were a reservoir of diverse multidrug-resistant (type ACSSuT) S. enterica serovar Typhimurium strains, and each farm was colonized with genetically closely related S. enterica serovar Typhimurium strains.

Initiation of migration and movement rates of Atlantic salmon smolts in fresh water

USGS Publications Warehouse

Stich, Daniel S.; Kinnison, Michael T.; Kocik, John F.; Zydlewski, Joseph D.

2015-01-01

Timing of ocean entry is critical for marine survival of both hatchery and wild Atlantic salmon (Salmo salar) smolts. Management practices and barriers to migration such as dams may constrain timing of smolt migrations resulting in suboptimal performance at saltwater entry. We modeled influences of stocking location, smolt development, and environmental conditions on (i) initiation of migration by hatchery-reared smolts and (ii) movement rate of hatchery- and wild-reared Atlantic salmon smolts in the Penobscot River, Maine, USA, from 2005 through 2014 using acoustic telemetry data. We also compared movement rates in free-flowing reaches with rates in reaches with hydropower dams and head ponds. We compared movement rates before and after (1) removal of two mainstem dams and (2) construction of new powerhouses. Initiation of movement by hatchery fish was influenced by smolt development, stocking location, and environmental conditions. Smolts with the greatest gill Na+, K+-ATPase (NKA) activity initiated migration 24 h sooner than fish with the lowest gill NKA activity. Fish with the greatest cumulative thermal experience initiated migration 5 days earlier than those with lowest cumulative thermal experience. Smolts released furthest from the ocean initiated migration earlier than those released downstream, but movement rate increased by fivefold closer to the ocean, indicating behavioral trade-offs between initiation and movement rate. Dams had a strong effect on movement rate. Movement rate increased from 2.8 to 5.4 km·h−1 in reaches where dams were removed, but decreased from 2.1 to 0.1 km·h−1 in reaches where new powerhouses were constructed. Movement rate varied throughout the migratory period and was inversely related to temperature. Fish moved slower at extreme high or low discharge. Responses in fish movement rates to dam removal indicate the potential scope of recovery for these activities.

Characterization of estuary use by Nisqually Hatchery Chinook based on Otolith analysis

USGS Publications Warehouse

Lind-Null, Angie M.; Larsen, Kim A.; Reisenbichler, Reg

2008-01-01

INTRODUCTION The Nisqually Fall Chinook population is one of 27 stocks in the Puget Sound evolutionarily significant unit listed as threatened under the federal Endangered Species Act (ESA). Preservation and extensive restoration of the Nisqually delta ecosystem are planned to assist in recovery of the stock. A pre-restoration baseline including life history types, estuary residence time, growth rates, and habitat use are needed to evaluate the potential response of hatchery and wild Chinook salmon to restoration. Otolith analysis has been selected as a means to examine Chinook salmon life history, growth, and residence in the Nisqually estuary. Over time, the information from the otolith analyses will be used to: 1) determine if estuary restoration actions cause changes to the population structure (i.e. frequency of the different life history trajectories) for Nisqually River Chinook, 2) compare pre- and post- restoration residence times and growth rates, 3) suggest whether estuary restoration yields substantial benefits for Chinook salmon through (1) and (2), and 4) compare differences in habitat use between hatchery and wild Chinook to further protect ESA listed stock. Otoliths are calcium carbonate structures in the inner ear that grow in proportion to the overall growth of the fish. Daily growth increments can be measured so date and fish size at various habitat transitions can be back-calculated. Careful analysis of otolith microstructure can be used to determine the number of days that a fish resided in the estuary as a juvenile (increment counts), size at entrance to the estuary, size at egress, and the amount that the fish grew while in the estuary. Juvenile hatchery Chinook salmon are generally released as smolts that move quickly through the delta with much shorter residence times than for many wild fish and are not dependent on the delta as nursery habitat (Myers and Horton 1982; Mace 1983; Levings et al. 1986). The purpose of this study is to use and evaluate otolith microstructure analysis as a tool for assessing the role of the estuary in the life history of hatchery Chinook salmon in the Nisqually River before and after restoration efforts at the Nisqually National Wildlife Refuge (Nisqually NWR). This tool is used to quantify changes in rate of growth, length of residence and habitat use to help predict restoration benefits to the federally threatened Nisqually River hatchery and wild Chinook salmon populations. Analysis of otolith microstructure typically is superior to the alternative of traditional mark-recapture methods. The latter are extremely expensive or inadequate in estuary habitats, typically are biased and substantially underestimate use, and do not directly reveal the importance or contribution to adult recruitment (i.e., they do not account for any differential survival afterward in Puget Sound or the ocean). Analysis of otolith microstructure for these purposes is proving successful for the Nisqually wild Chinook stock as well as a similar study that USGS and partners are conducting in the Skagit River estuary system located in northern Puget Sound. This work is based on research by Neilson et al. (1985). We expect to use the Skagit River as a reference for the before/after restoration comparison in the Nisqually River.

7 CFR 760.802 - Definitions.

Code of Federal Regulations, 2012 CFR

2012-01-01

... limited to, a laboratory, concrete pond, hatchery, rearing pond, raceway, pen, incubator, or other..., excessive moisture, hail, freeze, tornado, hurricane, typhoon, excessive wind, excessive heat, weather...

7 CFR 760.802 - Definitions.

Code of Federal Regulations, 2013 CFR

2013-01-01

... limited to, a laboratory, concrete pond, hatchery, rearing pond, raceway, pen, incubator, or other..., excessive moisture, hail, freeze, tornado, hurricane, typhoon, excessive wind, excessive heat, weather...

7 CFR 760.802 - Definitions.

Code of Federal Regulations, 2014 CFR

2014-01-01

... limited to, a laboratory, concrete pond, hatchery, rearing pond, raceway, pen, incubator, or other..., excessive moisture, hail, freeze, tornado, hurricane, typhoon, excessive wind, excessive heat, weather...

Hungry Horse Dam Fisheries Mitigation, 1992-1993 Progress Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

DosSantos, Joe; Vashro, Jim; Lockard, Larry

1994-06-01

In February of 1900, over forty agency representatives and interested citizens began development of the 1991 Mitigation Plan. This effort culminated in the 1993 Implementation Plan for mitigation of fish losses attributable to the construction and operation of Hungry Horse Dam. The primary purpose of this biennial report is to inform the public of the status of ongoing mitigation activities resulting from those planning efforts. A habitat improvement project is underway to benefit bull trout in Big Creek in the North Fork drainage of the Flathead River and work is planned in Hay Creek, another North Fork tributary. Bull troutmore » redd counts have been expanded and experimental programs involving genetic evaluation, outmigrant monitoring, and hatchery studies have been initiated, Cutthroat mitigation efforts have focused on habitat improvements in Elliott Creek and Taylor`s Outflow and improvements have been followed by imprint plants of hatchery fish and/or eyed eggs in those streams. Rogers Lake west of Kalispell and Lion Lake, near Hungry Horse, were chemically rehabilitated. Cool and warm water fish habitat has been improved in Halfmoon Lake and Echo Lake. Public education and public interest is important to the future success of mitigation activities. As part of the mitigation team`s public awareness responsibility we have worked with numerous volunteer groups, public agencies, and private landowners to stimulate interest and awareness of mitigation activities and the aquatic ecosystem. The purpose of this biennial report is to foster public awareness of, and support for, mitigation activities as we move forward in implementing the Hungry Horse Dam Fisheries Mitigation Implementation Plan.« less

7 CFR 57.100 - Specific exemptions.

Code of Federal Regulations, 2010 CFR

2010-01-01

... processing in nonofficial plants, including but not limited to bakeries, restaurants, and other food... grading operations; (2) Hatcheries; (3) Transporters; (4) Laboratories, pharmaceutical companies; and (5...

Physiological effects of handling and hauling stress on smallmouth bass

USGS Publications Warehouse

Carmichael, G.J.; Wedemeyer, G.A.; McCraren, J.P.; Millard, J.L.

1983-01-01

Basic physiological information on the stress caused by current hatchery practices is helpful in developing new and improved techniques to increase survival. In view of the present fishery management requirements for stocking smallmouth bas (Micropterus dolomieu), baseline information on the physiological effects of handling and hauling hatchery-reared fish is needed to serve as the foundation for improving transport methods. Shell (1959) summarized several physiological characteristics of smallmouth bass, but little information on their physiological tolerance to stress exists. The present study was designed to determine the physiological effects of handling and short-term hauling in small mouth bass. Plasma chloride, sodium, potassium, and glucose dynamics were monitored in indicate the severity of the resulting stress and the recovery time needed.

Fall Chinook Salmon Survival and Supplementation Studies in the Snake River Reservoirs, 1996 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Williams, John G.; Bjornn

1998-05-01

In 1996, the National Marine Fisheries Service, the Nez Perce Tribe, and the U.S. Fish and Wildlife Service completed the second year of cooperative research to investigate migrational characteristics of subyearling fall chinook salmon in the Snake River Basin. In spring and early summer, we captured natural subyearling fall chinook salmon by beach seine, PIT tagged them, and released them in two reaches of the Snake River. Also, subyearling fall chinook salmon reared at Lyons Ferry Hatchery were PIT tagged at the hatchery, transported, and released weekly at Pittsburg Landing on the Snake River and Big Canyon Creek on themore » Clearwater River to collect data on survival detection probabilities, and travel time.« less

A possible cause of sunburn in fish

USGS Publications Warehouse

1958-01-01

A LESION DESCRIBED AS A GRAY ΡATCH GENERALLY LOCATED ΑΝΤΕRIOR TO THE DORSAL FIN has been associated with high mortality of fish on numerous occasions in production hatcheries throughout the United States. This lesion has been called "sunburn" or "backpeel." No bacteria or other pathogens have been found in fish with these symptoms. For example, at a Montana hatchery in April 1956, mortality of 10 to 15 percent occurred daily and this lesion was the only syndrome found.  On occasion, shade has prevented this condition and even restored affected fish to an apparent normal condition; thus there has seemed to be a correlation between sunshine and the condition in fish. To our knowledge, this has been the only therapy attempted.

Relative yield of two transferrin phenotypes in coho salmon

USGS Publications Warehouse

McIntyre, John D.; Johnson, A. Kenneth

1977-01-01

Experimental groups of coho salmon (Oncorhynchus kisutch) of transferring types AA and AC were compared to determine relative growth and survival before release, yields from the fishery, and returns of fish to the hatchery as 2- and 3-yr-olds. In the hatchery, growth was faster and survival higher in the AA than in the AC types. However, yields of AA and AC types were equal, although the yield of AC types as 3-yr-olds was greater than that of AA types because more of the AA males matured in 2 years. We concluded that it would be futile to attempt to increase the yield of coho salmon by maximizing the frequency of biochemical phenotypes that display only a temporary advantage over other types.

9 CFR 147.23 - Hatchery sanitation.

Code of Federal Regulations, 2011 CFR

2011-01-01

... AGRICULTURE LIVESTOCK IMPROVEMENT AUXILIARY PROVISIONS ON NATIONAL POULTRY IMPROVEMENT PLAN Sanitation... for transportation of hatching eggs. Soiled egg case fillers should be destroyed. (g) Day-old chicks...

Genetic diversity and associated pathology of rhabdovirus infections in farmed and wild perch Perca fluviatilis in Ireland.

PubMed

Ruane, N M; Rodger, H D; McCarthy, L J; Swords, D; Dodge, M; Kerr, R C; Henshilwood, K; Stone, D M

2014-12-02

Rhabdovirus infections are an emerging problem for both wild and farmed freshwater fish in Northern Europe. In October 2005, a clinical outbreak with an approximate mortality rate of 40% occurred in a single batch of juvenile perch on a farm in the Republic of Ireland. Clinical signs developed slowly and were consistent with a perch rhabdovirus infection: signs included haemorrhages at the base of the fins and apparent impairment of the central nervous system (manifested as loss of equilibrium and erratic swimming behaviour). Studies suggest that the infected fish originated from a hatchery within the country which relied on wild fish broodstock to supplement the production of perch juveniles. A related rhabdovirus was subsequently isolated from this hatchery. Virus isolation studies have shown that rhabdoviruses were often isolated from wild fish in the vicinity of the hatchery between 1993 and 2005. All isolates were analysed using a generic primer set specific for the L gene of fish vesiculotype viruses. Phylogenetic analysis revealed that all isolates recovered from perch clustered together with the European lake trout rhabdovirus (903/87) of the genus Perhabdovirus. In addition to this, anguillid rhabdovirus was isolated from eel, and the partial L-gene sequence of a previously reported isolate from tench clustered with the pike fry rhabdoviruses, in the genus Sprivivirus.

Genetic characterization of naturally spawned Snake River fall-run Chinook salmon

USGS Publications Warehouse

Marshall, A.R.; Blankenship, H.L.; Connor, W.P.

1999-01-01

We sampled juvenile Snake River chinook salmon Oncorhynchus tshawytscha to genetically characterize the endangered Snake River fall-run population. Juveniles from fall and spring–summer lineages coexisted in our sampling areas but were differentiated by large allozyme allele frequency differences. We sorted juveniles by multilocus genotypes into putative fall and spring lineage subsamples and determined lineage composition using maximum likelihood estimation methods. Paired sMEP-1* and PGK-2* genotypes—encoding malic enzyme (NADP+) and phosphoglycerate kinase, respectively—were very effective for sorting juveniles by lineage, and subsamples estimated to be 100% fall lineage were obtained in four annual samples. We examined genetic relationships of these fall lineage juveniles with adjacent populations from the Columbia River and from Lyons Ferry Hatchery, which was established to perpetuate the Snake River fall-run population. Our samples of naturally produced Snake River fall lineage juveniles were most closely aligned with Lyons Ferry Hatchery samples. Although fall-run strays of Columbia River hatchery origin found on spawning grounds threaten the genetic integrity of the Snake River population, juvenile samples (a) showed distinctive patterns of allelic diversity, (b) were differentiated from Columbia River populations, and (c) substantiate earlier conclusions that this population is an important genetic resource. This first characterization of naturally produced Snake River fall chinook salmon provides a baseline for monitoring and recovery planning.

Experiments upon the control of Trichodiniasis of salmonid fishes by the prolonged recirculation of formalin solutions

USGS Publications Warehouse

1940-01-01

In a search for more effective disinfectants to combat parasitic diseases of hatchery fish, the authors report results from a series of experiments designed to determine the toxicity of varying exposures to concentrations of formalin, sodium p-phenolsulphonate, ammonium sulphate, and sodium benzoate. Non-toxic concentrations of these disinfectants were tested, in addition to the usual hatchery methods of salt treatment and hand dipping in copper sulphate and acetic acid solutions, on No. 1 brook trout fingerlings which had been experimentally infected with the protozoan parasite Trichodina sp. (previously known as Cyclochaeta sp.).Of the disinfectants tested, only formalin completely removed all parasites. Salt treatment in a 5 per cent solution, by weight, as well as hand dipping in 1:500 acetic acid, failed to eradicate all parasites present, although a marked reduction in their numbers did occur. The hand dipping in a 1:2,000 copper sulphate solution was found to be without practical value for the removal of parasites.The authors recommend a prolonged treatment for sixty minutes by recirculating a 1:4,000 solution of formalin, or, where circumstances permit, a 120- to 150-minute exposure to a 1:6,000 concentration of formalin, as the most effective, most economical, and least toxic treatments for combating infections of Trichodina sp., and presumably those of other external parasites as well, among hatchery fish.

Estimating Common Growth Patterns in Juvenile Chinook Salmon (Oncorhynchus tshawytscha) from Diverse Genetic Stocks and a Large Spatial Extent.

PubMed

Goertler, Pascale A L; Scheuerell, Mark D; Simenstad, Charles A; Bottom, Daniel L

2016-01-01

Life history variation in Pacific salmon (Oncorhynchus spp.) supports species resilience to natural disturbances and fishery exploitation. Within salmon species, life-history variation often manifests during freshwater and estuarine rearing, as variation in growth. To date, however, characterizing variability in growth patterns within and among individuals has been difficult via conventional sampling methods because of the inability to obtain repeated size measurements. In this study we related otolith microstructures to growth rates of individual juvenile Chinook salmon (O. tshawytscha) from the Columbia River estuary over a two-year period (2010-2012). We used dynamic factor analysis to determine whether there were common patterns in growth rates within juveniles based on their natal region, capture location habitat type, and whether they were wild or of hatchery origin. We identified up to five large-scale trends in juvenile growth rates depending on month and year of capture. We also found that hatchery fish had a narrower range of trend loadings for some capture groups, suggesting that hatchery fish do not express the same breadth of growth variability as wild fish. However, we were unable to resolve a relationship between specific growth patterns and habitat transitions. Our study exemplifies how a relatively new statistical analysis can be applied to dating or aging techniques to summarize individual variation, and characterize aspects of life history diversity.