Bridging the Gap between Scientific Data Producers and Consumers: A Provenance Approach

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stephan, Eric G.; Pinheiro da Silva, Paulo; Kleese van Dam, Kerstin

2013-06-03

Despite the methodical and painstaking efforts made by scientists to record their scientific findings and protocols, a knowledge gap problem continues to persist today between producers of scientific results and consumers because technology is performing the exchange of data as opposed to scientists making direct contact. Provenance is a means to formalize how this knowledge is transferred. However, for it to be meaningful to scientists, the provenance research community needs continued contributions from the scientific community to extend and leverage provenance-based vocabularies and technology from the provenance community. Going forward the provenance community must also be vigilant to meet scalabilitymore » needs of data intensive science« less

Application of Data Provenance in Healthcare Analytics Software: Information Visualisation of User Activities

PubMed Central

Xu, Shen; Rogers, Toby; Fairweather, Elliot; Glenn, Anthony; Curran, James; Curcin, Vasa

2018-01-01

Data provenance is a technique that describes the history of digital objects. In health data settings, it can be used to deliver auditability and transparency, and to achieve trust in a software system. However, implementing data provenance in analytics software at an enterprise level presents a different set of challenges from the research environments where data provenance was originally devised. In this paper, the challenges of reporting provenance information to the user is presented. Provenance captured from analytics software can be large and complex and visualizing a series of tasks over a long period can be overwhelming even for a domain expert, requiring visual aggregation mechanisms that fit with complex human cognitive activities involved in the process. This research studied how provenance-based reporting can be integrated into a health data analytics software, using the example of Atmolytics visual reporting tool. PMID:29888084

Distinguishing Provenance Equivalence of Earth Science Data

NASA Technical Reports Server (NTRS)

Tilmes, Curt; Yesha, Ye; Halem, M.

2010-01-01

Reproducibility of scientific research relies on accurate and precise citation of data and the provenance of that data. Earth science data are often the result of applying complex data transformation and analysis workflows to vast quantities of data. Provenance information of data processing is used for a variety of purposes, including understanding the process and auditing as well as reproducibility. Certain provenance information is essential for producing scientifically equivalent data. Capturing and representing that provenance information and assigning identifiers suitable for precisely distinguishing data granules and datasets is needed for accurate comparisons. This paper discusses scientific equivalence and essential provenance for scientific reproducibility. We use the example of an operational earth science data processing system to illustrate the application of the technique of cascading digital signatures or hash chains to precisely identify sets of granules and as provenance equivalence identifiers to distinguish data made in an an equivalent manner.

Provenance research: investigation of genetic diversity associated with geography

Treesearch

Robert Z. Callaham

1963-01-01

Provenance in forestry refers to the population of trees growing at n particular place of origin. Provenance research defines the genetic and environmental components of phenotypic variation associated with geographic source. Information on provenance is important in assuring sources of seed to give well-adapted, productive trees and in directing breeding of...

Scientific Reproducibility in Biomedical Research: Provenance Metadata Ontology for Semantic Annotation of Study Description.

PubMed

Sahoo, Satya S; Valdez, Joshua; Rueschman, Michael

2016-01-01

Scientific reproducibility is key to scientific progress as it allows the research community to build on validated results, protect patients from potentially harmful trial drugs derived from incorrect results, and reduce wastage of valuable resources. The National Institutes of Health (NIH) recently published a systematic guideline titled "Rigor and Reproducibility " for supporting reproducible research studies, which has also been accepted by several scientific journals. These journals will require published articles to conform to these new guidelines. Provenance metadata describes the history or origin of data and it has been long used in computer science to capture metadata information for ensuring data quality and supporting scientific reproducibility. In this paper, we describe the development of Provenance for Clinical and healthcare Research (ProvCaRe) framework together with a provenance ontology to support scientific reproducibility by formally modeling a core set of data elements representing details of research study. We extend the PROV Ontology (PROV-O), which has been recommended as the provenance representation model by World Wide Web Consortium (W3C), to represent both: (a) data provenance, and (b) process provenance. We use 124 study variables from 6 clinical research studies from the National Sleep Research Resource (NSRR) to evaluate the coverage of the provenance ontology. NSRR is the largest repository of NIH-funded sleep datasets with 50,000 studies from 36,000 participants. The provenance ontology reuses ontology concepts from existing biomedical ontologies, for example the Systematized Nomenclature of Medicine Clinical Terms (SNOMED CT), to model the provenance information of research studies. The ProvCaRe framework is being developed as part of the Big Data to Knowledge (BD2K) data provenance project.

Scientific Reproducibility in Biomedical Research: Provenance Metadata Ontology for Semantic Annotation of Study Description

PubMed Central

Sahoo, Satya S.; Valdez, Joshua; Rueschman, Michael

2016-01-01

Scientific reproducibility is key to scientific progress as it allows the research community to build on validated results, protect patients from potentially harmful trial drugs derived from incorrect results, and reduce wastage of valuable resources. The National Institutes of Health (NIH) recently published a systematic guideline titled “Rigor and Reproducibility “ for supporting reproducible research studies, which has also been accepted by several scientific journals. These journals will require published articles to conform to these new guidelines. Provenance metadata describes the history or origin of data and it has been long used in computer science to capture metadata information for ensuring data quality and supporting scientific reproducibility. In this paper, we describe the development of Provenance for Clinical and healthcare Research (ProvCaRe) framework together with a provenance ontology to support scientific reproducibility by formally modeling a core set of data elements representing details of research study. We extend the PROV Ontology (PROV-O), which has been recommended as the provenance representation model by World Wide Web Consortium (W3C), to represent both: (a) data provenance, and (b) process provenance. We use 124 study variables from 6 clinical research studies from the National Sleep Research Resource (NSRR) to evaluate the coverage of the provenance ontology. NSRR is the largest repository of NIH-funded sleep datasets with 50,000 studies from 36,000 participants. The provenance ontology reuses ontology concepts from existing biomedical ontologies, for example the Systematized Nomenclature of Medicine Clinical Terms (SNOMED CT), to model the provenance information of research studies. The ProvCaRe framework is being developed as part of the Big Data to Knowledge (BD2K) data provenance project. PMID:28269904

EFFECTS OF COLD STRATIFICATION AND GA3 ON GERMINATION OF ARBUTUS UNEDO SEEDS OF THREE PROVENANCES.

PubMed

Pipinis, Elias; Stampoulidis, Athanasios; Milios, Elias; Kitikidou, Kyriaki; Radoglou, Kalliopi

2017-01-01

Arbutus unedo is a valuable Mediterranean shrub as an ornamental plant as well as fruit tree. Fresh fruits of A. unedo are a good source of antioxidants, of vitamins C, E and carotenoids and also are characterized by the high content of mineral elements. The effects of gibberellic acid (GA 3 ) and cold stratification (CS) on seed germination performance were investigated in A. unedo seeds collected from three provenances in the Northern part of Greece. Seeds of each provenance were soaked in solutions of GA 3 (500, 1000 or 2000 ppm) for 24 h and subsequently were subjected to CS at 3 - 5°C for 0, 1, 2, and 3 months. Non-stratified seeds of the three A. unedo provenances which were not treated with GA 3 solutions exhibited very low germination. However, seed germination was significantly improved after a one-month period of CS. Similarly, the non-stratified seeds of all three provenances became non-dormant after the treatment with 2000 ppm GA 3 and they germinated at high percentages. However, in untreated seeds with GA3, after a one-month CS period the seeds of the Pieria provenance exhibited higher germination percentage than that of Rodopi provenance seeds. Furthermore, in non-stratified seeds, the Pieria provenance seeds treated with GA3 germinated at higher percentages and more rapidly than those of the other two provenances. The results indicated that untreated seeds exhibited very low germination at 20/25°C. However, in all three provenances seed germinability was significantly improved by a one-month period of CS or treatment of seeds with 2000 ppm GA3. Furthermore, there was a considerable variability among seed provenances in response to the treatments which were applied.

Lowering the Barrier to Reproducible Research by Publishing Provenance from Common Analytical Tools

NASA Astrophysics Data System (ADS)

Jones, M. B.; Slaughter, P.; Walker, L.; Jones, C. S.; Missier, P.; Ludäscher, B.; Cao, Y.; McPhillips, T.; Schildhauer, M.

2015-12-01

Scientific provenance describes the authenticity, origin, and processing history of research products and promotes scientific transparency by detailing the steps in computational workflows that produce derived products. These products include papers, findings, input data, software products to perform computations, and derived data and visualizations. The geosciences community values this type of information, and, at least theoretically, strives to base conclusions on computationally replicable findings. In practice, capturing detailed provenance is laborious and thus has been a low priority; beyond a lab notebook describing methods and results, few researchers capture and preserve detailed records of scientific provenance. We have built tools for capturing and publishing provenance that integrate into analytical environments that are in widespread use by geoscientists (R and Matlab). These tools lower the barrier to provenance generation by automating capture of critical information as researchers prepare data for analysis, develop, test, and execute models, and create visualizations. The 'recordr' library in R and the `matlab-dataone` library in Matlab provide shared functions to capture provenance with minimal changes to normal working procedures. Researchers can capture both scripted and interactive sessions, tag and manage these executions as they iterate over analyses, and then prune and publish provenance metadata and derived products to the DataONE federation of archival repositories. Provenance traces conform to the ProvONE model extension of W3C PROV, enabling interoperability across tools and languages. The capture system supports fine-grained versioning of science products and provenance traces. By assigning global identifiers such as DOIs, reseachers can cite the computational processes used to reach findings. And, finally, DataONE has built a web portal to search, browse, and clearly display provenance relationships between input data, the software used to execute analyses and models, and derived data and products that arise from these computations. This provenance is vital to interpretation and understanding of science, and provides an audit trail that researchers can use to understand and replicate computational workflows in the geosciences.

Geoscience Australia's enterprise application of provenance standards and systems for physical and digital objects

NASA Astrophysics Data System (ADS)

Kemp, C.; Car, N. J.

2016-12-01

Geoscience Australia (GA) is a government agency that provides advice on the geology and geography of Australia. It is the custodian of many digital and physical datasets of national significance. For several years GA has been implementing an enterprise approach to provenance management. The goal for transparency and reproducibility for all of GA's information products; an objective supported at the highest levels and explicitly listed in its Science Principles. Currently GA is finalising a set of enterprise tools to assist with provenance management and rolling out provenance reporting to different science areas. GA has adopted or developed: provenance storage systems; provenance collection code libraries (for use within automated systems); reporting interfaces (for manual use) and provenance representation capability within legacy catalogues. Using these tools within GA's science areas involves modelling the scenario first and then assessing whether the area has its data managed in such a way that allows links to data within provenance to be resolvable in perpetuity. We don't just want to represent provenance (demonstrating transparency), we want to access data via provenance (allowing for reproducibility). A subtask of GA's current work is to link physical samples to information products (datasets, reports, papers) by uniquely and persistently identifying samples using International GeoSample Numbers and then modelling automated & manual laboratory workflows and associated tasks, such as data delivery to corporate databases using the W3C's PROV Data Model. We use PROV DM throughout our modelling and systems. We are also moving to deliver all sample and digital dataset metadata across the agency in the Web Ontology Language (OWL) and exposing it via Linked Data methods in order to allow Semantic Web querying of multiple systems allowing provenance to be leveraged using as a single method and query point. Through the Science First Transformation Program GA is undergoing a significant rethinking of its data architecture, curation and access to support the Digital Science capability for which Provenance management is an output.

A coastal and an interior Douglas fir provenance exhibit different metabolic strategies to deal with drought stress.

PubMed

Du, Baoguo; Jansen, Kirstin; Kleiber, Anita; Eiblmeier, Monika; Kammerer, Bernd; Ensminger, Ingo; Gessler, Arthur; Rennenberg, Heinz; Kreuzwieser, Jürgen

2016-02-01

Drought is a major environmental stress affecting growth and vitality of forest ecosystems. In the present study, foliar nitrogen (N) and carbon (C) metabolism of two Douglas fir (Pseudotsuga menziesii) provenances with assumed different drought tolerance were investigated. We worked with 1-year-old seedlings of the interior provenance Fehr Lake (FEHR) originating from a dry environment and the coastal provenance Snoqualmie (SNO) from a more humid origin. Total C and N, structural N and the concentrations of soluble protein, total amino acids (TAAs) and individual amino acids as well as the relative abundance of polar, low-molecular-weight metabolites including antioxidants were determined in current-year needles exposed either to 42 days of drought or to 42 days drought plus 14 days of rewatering. The seedlings reacted in a provenance-specific manner to drought stress. Coastal provenance SNO showed considerably increased contents of TAAs, which were caused by increased abundance of the quantitatively most important amino acids arginine, ornithine and lysine. Additionally, the polyamine putrescine accumulated exclusively in drought-stressed trees of this provenance. In contrast, the interior provenance FEHR showed the opposite response, i.e., drastically reduced concentrations of these amino acids. However, FEHR showed considerably increased contents of pyruvate-derived and aromatic amino acids, and also higher drought-induced levels of the antioxidants ascorbate and α-tocopherol. In response to drought, both provenances produced large amounts of carbohydrates, such as glucose and fructose, most likely as osmolytes that can readily be metabolized for protection against osmotic stress. We conclude that FEHR and SNO cope with drought stress in a provenance-specific manner: the coastal provenance SNO was mainly synthesizing N-based osmolytes, a reaction not observed in the interior provenance FEHR; instead, the latter increased the levels of scavengers of reactive oxygen species. Our results underline the importance of provenance-specific reactions to abiotic stress. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Diverging drought resistance of Scots pine provenances revealed by infrared thermography and mortality

NASA Astrophysics Data System (ADS)

Seidel, Hannes; Schunk, Christian; Matiu, Michael; Menzel, Annette

2016-04-01

Climate warming and more frequent and severe drought events will alter the adaptedness and fitness of tree species. Especially, Scots pine forests have been affected above average by die-off events during the last decades. Assisted migration of adapted provenances might help alleviating impacts by recent climate change and successfully regenerating forests. However, the identification of suitable provenances based on established ecophysiological methods is time consuming, sometimes invasive, and data on provenance-specific mortality are lacking. We studied the performance, stress and survival of potted Scots pine seedlings from 12 European provenances grown in a greenhouse experiment with multiple drought and warming treatments. In this paper, we will present results of drought stress impacts monitored with four different thermal indices derived from infrared thermography imaging as well as an ample mortality study. Percent soil water deficit (PSWD) was shown to be the main driver of drought stress response in all thermal indices. In spite of wet and dry reference surfaces, however, fluctuating environmental conditions, mainly in terms of air temperature and humidity, altered the measured stress response. In linear mixed-effects models, besides PSWD and meteorological covariates, the factors provenance and provenance - PSWD interactions were included. The explanatory power of the models (R2) ranged between 0.51 to 0.83 and thus, provenance-specific responses to strong and moderate drought and subsequent recovery were revealed. However, obvious differences in the response magnitude of provenances to drought were difficult to explicitly link to general features such Mediterranean - continental type or climate at the provenances' origin. We conclude that seedlings' drought resistance may be linked to summer precipitation and their experienced stress levels are a.o. dependent on their above ground dimensions under given water supply. In respect to mortality, previous drought stress experience lowered the current risk and obvious provenance effects were largely related to different growth traits (dimensions). Our experimental results suggest besides evidence for abiotic stress hardening provenance-specific variation in drought resilience. Thus, there is room for provenance-based assisted migration as tool for climate change adaptation in forestry.

The Symbiotic Relationship between Scientific Workflow and Provenance (Invited)

NASA Astrophysics Data System (ADS)

Stephan, E.

2010-12-01

The purpose of this presentation is to describe the symbiotic nature of scientific workflows and provenance. We will also discuss the current trends and real world challenges facing these two distinct research areas. Although motivated differently, the needs of the international science communities are the glue that binds this relationship together. Understanding and articulating the science drivers to these communities is paramount as these technologies evolve and mature. Originally conceived for managing business processes, workflows are now becoming invaluable assets in both computational and experimental sciences. These reconfigurable, automated systems provide essential technology to perform complex analyses by coupling together geographically distributed disparate data sources and applications. As a result, workflows are capable of higher throughput in a shorter amount of time than performing the steps manually. Today many different workflow products exist; these could include Kepler and Taverna or similar products like MeDICI, developed at PNNL, that are standardized on the Business Process Execution Language (BPEL). Provenance, originating from the French term Provenir “to come from”, is used to describe the curation process of artwork as art is passed from owner to owner. The concept of provenance was adopted by digital libraries as a means to track the lineage of documents while standards such as the DublinCore began to emerge. In recent years the systems science community has increasingly expressed the need to expand the concept of provenance to formally articulate the history of scientific data. Communities such as the International Provenance and Annotation Workshop (IPAW) have formalized a provenance data model. The Open Provenance Model, and the W3C is hosting a provenance incubator group featuring the Proof Markup Language. Although both workflows and provenance have risen from different communities and operate independently, their mutual success is tied together, forming a symbiotic relationship where research and development advances in one effort can provide tremendous benefits to the other. For example, automating provenance extraction within scientific applications is still a relatively new concept; the workflow engine provides the framework to capture application specific operations, inputs, and resulting data. It provides a description of the process history and data flow by wrapping workflow components around the applications and data sources. On the other hand, a lack of cooperation between workflows and provenance can inhibit usefulness of both to science. Blindly tracking the execution history without having a true understanding of what kinds of questions end users may have makes the provenance indecipherable to the target users. Over the past nine years PNNL has been actively involved in provenance research in support of computational chemistry, molecular dynamics, biology, hydrology, and climate. PNNL has also been actively involved in efforts by the international community to develop open standards for provenance and the development of architectures to support provenance capture, storage, and querying. This presentation will provide real world use cases of how provenance and workflow can be leveraged and implemented to meet different needs and the challenges that lie ahead.

Height and diameter variation in twelve white ash provenance/progeny tests in eastern United States

Treesearch

G. Rink; F.H. Kung

1991-01-01

Results from 12- and 13-year old rangewide provenance/progeny tests of white ash (Fraxinus americana L.) planted at 12 locations throughout the eastern United States are reported. Although heritability of white ash tree height and dbh is high at both the provenance and family levels, the trend in variance components is for increasing provenance and...

Genetic Variation in Seed and Fruit Characters in Sugar Maple

Treesearch

William J. Gabriel

1978-01-01

A study of the seeds and fruits of sugar maples from 32 provenances has shown that: (1) dry weight of seed and percentage of filled fruit varied genetically among and within provenances; (2) dry weight of seed and latitude of provenance are positively correlated; provenances from higher latitudes and colder temperatures exhibited higher weights; (3) the percentage of...

Survival and growth of two intensively cultured jack pine provenances raised in Tubepak and Jiffy 7 containers

Treesearch

J. Zavitkovski; Howard M. Phipps

1983-01-01

Container type, provenance, and spacing affect survival, height and d.b.h, growth, and biomass production of intensively cultured jack pine. The Lower Michigan provenance and Tubepak grown plants performed better than the local (Wisconsin) provenance and plants raised in Jiffy 7 pellets. At age 5, biomass of Tubepak plantings was more than 100% higher than that of...

Drought effects on root and needle terpenoid content of a coastal and an interior Douglas fir provenance.

PubMed

Kleiber, Anita; Duan, Qiuxiao; Jansen, Kirstin; Verena Junker, Laura; Kammerer, Bernd; Rennenberg, Heinz; Ensminger, Ingo; Gessler, Arthur; Kreuzwieser, Jürgen

2017-12-01

Douglas fir (Pseudotsuga menziesii) is a conifer species that stores large amounts of terpenoids, mainly monoterpenoids in resin ducts of various tissues. The effects of drought on stored leaf terpenoid concentrations in trees are scarcely studied and published data are partially controversial, since reduced, unaffected or elevated terpenoid contents due to drought have been reported. Even less is known on the effect of drought on root terpenoids. In the present work, we investigated the effect of reduced water availability on the terpenoid content in roots and needles of Douglas fir seedlings. Two contrasting Douglas fir provenances were studied: an interior provenance (var. glauca) with assumed higher drought resistance, and a coastal provenance (var. menziesii) with assumed lower drought resistance. We tested the hypothesis that both provenances show specific patterns of stored terpenoids and that the patterns will change in response to drought in both, needles and roots. We further expected stronger changes in the less drought tolerant coastal provenance. For this purpose, we performed an experiment under controlled conditions, in which the trees were exposed to moderate and severe drought stress. According to our expectations, the study revealed clear provenance-specific terpenoid patterns in needles. However, such patterns were not detected in the roots. Drought slightly increased the needle terpenoid contents of the coastal but not of the interior provenance. We also observed increased terpenoid abundance mainly in roots of the moderately stressed coastal provenance. Overall, from the observed provenance-specific reactions with increased terpenoid levels in trees of the coastal origin in response to drought, we conclude on functions of terpenoids for abiotic stress tolerance that might be fulfilled by other, constitutively expressed mechanisms in drought-adapted interior provenances. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Defining the "proven technology" technical criterion in the reactor technology assessment for Malaysia's nuclear power program

NASA Astrophysics Data System (ADS)

Anuar, Nuraslinda; Kahar, Wan Shakirah Wan Abdul; Manan, Jamal Abdul Nasir Abd

2015-04-01

Developing countries that are considering the deployment of nuclear power plants (NPPs) in the near future need to perform reactor technology assessment (RTA) in order to select the most suitable reactor design. The International Atomic Energy Agency (IAEA) reported in the Common User Considerations (CUC) document that "proven technology" is one of the most important technical criteria for newcomer countries in performing the RTA. The qualitative description of five desired features for "proven technology" is relatively broad and only provides a general guideline to its characterization. This paper proposes a methodology to define the "proven technology" term according to a specific country's requirements using a three-stage evaluation process. The first evaluation stage screens the available technologies in the market against a predefined minimum Technology Readiness Level (TRL) derived as a condition based on national needs and policy objectives. The result is a list of technology options, which are then assessed in the second evaluation stage against quantitative definitions of CUC desired features for proven technology. The potential technology candidates produced from this evaluation is further narrowed down to obtain a list of proven technology candidates by assessing them against selected risk criteria and the established maximum allowable total score using a scoring matrix. The outcome of this methodology is the proven technology candidates selected using an accurate definition of "proven technology" that fulfills the policy objectives, national needs and risk, and country-specific CUC desired features of the country that performs this assessment. A simplified assessment for Malaysia is carried out to demonstrate and suggest the use of the proposed methodology. In this exercise, ABWR, AP1000, APR1400 and EPR designs assumed the top-ranks of proven technology candidates according to Malaysia's definition of "proven technology".

SEIS-PROV: Practical Provenance for Seismological Data

NASA Astrophysics Data System (ADS)

Krischer, L.; Smith, J. A.; Tromp, J.

2015-12-01

It is widely recognized that reproducibility is crucial to advance science, but at the same time it is very hard to actually achieve. This results in it being recognized but also mostly ignored by a large fraction of the community. A key ingredient towards full reproducibility is to capture and describe the history of data, an issue known as provenance. We present SEIS-PROV, a practical format and data model to store provenance information for seismological data. In a seismological context, provenance can be seen as information about the processes that generated and modified a particular piece of data. For synthetic waveforms the provenance information describes which solver and settings therein were used to generate it. When looking at processed seismograms, the provenance conveys information about the different time series analysis steps that led to it. Additional uses include the description of derived data types, such as cross-correlations and adjoint sources, enabling their proper storage and exchange. SEIS-PROV is based on W3C PROV (http://www.w3.org/TR/prov-overview/), a standard for generic provenance information. It then applies an additional set of constraints to make it suitable for seismology. We present a definition of the SEIS-PROV format, a way to check if any given file is a valid SEIS-PROV document, and two sample implementations: One in SPECFEM3D GLOBE (https://geodynamics.org/cig/software/specfem3d_globe/) to store the provenance information of synthetic seismograms and another one as part of the ObsPy (http://obspy.org) framework enabling automatic tracking of provenance information during a series of analysis and transformation stages. This, along with tools to visualize and interpret provenance graphs, offers a description of data history that can be readily tracked, stored, and exchanged.

Comparing the variation of needle and wood terpenoids in Scots pine provenances.

PubMed

Manninen, A M; Tarhanen, S; Vuorinen, M; Kainulaine, P

2002-01-01

We determined variation in both the concentration and composition of terpenoids in needles and wood within nine Scots pine (Pinus sylvestris) provenances. Seedlings of different provenances representing a 1200-km N-S transect from Estonia to northern Finland were cultivated in Suonenjoki nursery field, central Finland, for seven years. Growth of seedlings and the number of vertical resin ducts in wood were also determined. alpha-Pinene and 3-carene were the major monoterpenes both in the needles and wood. The total monoterpene concentration was about five times higher in the needles than in the wood. A strong positive correlation was found between proportional quantities of several terpenes of the needles and wood, particularly for 3-carene, sabinene, and terpinolene. The needles contained both labdane-type and tricyclic resin acids, whereas the wood contained only tricyclic ones. The wood had a four times higher tricyclic resin acid concentration than the needles. The highest total monoterpene concentration in the needles and in the wood occurred in the most northern Muonio provenance and in the most southern Saaremaa provenance plants, respectively. The amount of high 3-carene genotype trees decreased among the northern provenances. The wood of the most northern Muonio provenance showed the lowest total resin acid concentration, but provenance did not affect total tricyclic resin acids in the needles. Korpilahti provenance trees from central Finland had the best growth in height. In addition, Korpilahti and Ruokolahti provenance trees showed largest radial growth of stem and smallest number of vertical resin ducts. The results suggest that especially the proportional quantity of 3-carene in the needles could be used in estimating the amount of this compound in the wood and vice versa.

Fagus sylvatica L. provenances maintain different leaf metabolic profiles and functional response

NASA Astrophysics Data System (ADS)

Aranda, Ismael; Sánchez-Gómez, David; de Miguel, Marina; Mancha, Jose Antonio; Guevara, María Angeles; Cadahía, Estrella; Fernández de Simón, María Brígida

2017-07-01

Most temperate forest tree species will suffer important environmental changes as result of the climate change. Adaptiveness to local conditions could change at different sites in the future. In this context, the study of intra-specific variability is important to clarify the singularity of different local populations. Phenotypic differentiation between three beech provenances covering a wide latitudinal range (Spain/ES, Germany/DE and Sweden/SE), was studied in a greenhouse experiment. Non-target leaf metabolite profiles and ecophysiological response was analyzed in well-watered and water stressed seedlings. There was a provenance-specific pattern in the relative concentrations of some leaf metabolites regardless watering treatment. The DE and SE from the center and north of the distribution area of the species showed a clear differentiation from the ES provenance in the relative concentration of some metabolites. Thus the ES provenance from the south maintained larger relative concentration of some organic and amino acids (e.g. fumaric and succinic acids or valine and isoleucine), and in some secondary metabolites (e.g. kaempferol, caffeic and ferulic acids). The ecophysiological response to mild water stress was similar among the three provenances as a consequence of the moderate water stress applied to seedlings, although leaf N isotope composition (δ15N) and leaf C:N ratio were higher and lower respectively in DE than in the other two provenances. This would suggest potential differences in the capacity to uptake and post-process nitrogen according to provenance. An important focus of the study was to address for the first time inter-provenance leaf metabolic diversity in beech from a non-targeted metabolic profiling approach that allowed differentiation of the three studied provenances.

Applying the Karma Provenance tool to NASA's AMSR-E Data Production Stream

NASA Astrophysics Data System (ADS)

Ramachandran, R.; Conover, H.; Regner, K.; Movva, S.; Goodman, H. M.; Pale, B.; Purohit, P.; Sun, Y.

2010-12-01

Current procedures for capturing and disseminating provenance, or data product lineage, are limited in both what is captured and how it is disseminated to the science community. For example, the Advanced Microwave Scanning Radiometer for the Earth Observing System (AMSR-E) Science Investigator-led Processing System (SIPS) generates Level 2 and Level 3 data products for a variety of geophysical parameters. Data provenance and quality information for these data sets is either very general (e.g., user guides, a list of anomalous data receipt and processing conditions over the life of the missions) or difficult to access or interpret (e.g., quality flags embedded in the data, production history files not easily available to users). Karma is a provenance collection and representation tool designed and developed for data driven workflows such as the productions streams used to produce EOS standard products. Karma records uniform and usable provenance metadata independent of the processing system while minimizing both the modification burden on the processing system and the overall performance overhead. Karma collects both the process and data provenance. The process provenance contains information about the workflow execution and the associated algorithm invocations. The data provenance captures metadata about the derivation history of the data product, including algorithms used and input data sources transformed to generate it. As part of an ongoing NASA funded project, Karma is being integrated into the AMSR-E SIPS data production streams. Metadata gathered by the tool will be presented to the data consumers as provenance graphs, which are useful in validating the workflows and determining the quality of the data product. This presentation will discuss design and implementation issues faced while incorporating a provenance tool into a structured data production flow. Prototype results will also be presented in this talk.

Enabling Linked Science in Global Climate Uncertainty Quantification (UQ) Research

NASA Astrophysics Data System (ADS)

Elsethagen, T.; Stephan, E.; Lin, G.; Williams, D.; Banks, E.

2012-12-01

This paper shares a real-world global climate UQ science use case and illustrates how a linked science application called Provenance Environment (ProvEn), currently being developed, enables and facilitates scientific teams to publish, share, link, and discover new links over their UQ research results. UQ results include terascale datasets that are published to an Earth Systems Grid Federation (ESGF) repository. ProvEn demonstrates how a scientific team conducting UQ studies can discover dataset links using its domain knowledgebase, allowing them to better understand the UQ study research objectives, the experimental protocol used, the resulting dataset lineage, related analytical findings, ancillary literature citations, along with the social network of scientists associated with the study. This research claims that scientists using this linked science approach will not only allow them to greatly benefit from understanding a particular dataset within a knowledge context, a benefit can also be seen by the cross reference of knowledge among the numerous UQ studies being stored in ESGF. ProvEn collects native forms of data provenance resources as the UQ study is carried out. The native data provenance resources can be collected from a variety of sources such as scripts, a workflow engine log, simulation log files, scientific team members etc. Schema alignment is used to translate the native forms of provenance into a set of W3C PROV-O semantic statements used as a common interchange format which will also contain URI references back to resources in the UQ study dataset for querying and cross referencing. ProvEn leverages Fedora Commons' digital object model in a Resource Oriented Architecture (ROA) (i.e. a RESTful framework) to logically organize and partition native and translated provenance resources by UQ study. The ROA also provides scientists the means to both search native and translated forms of provenance.

Tracking Provenance of Earth Science Data

NASA Technical Reports Server (NTRS)

Tilmes, Curt; Yesha, Yelena; Halem, Milton

2010-01-01

Tremendous volumes of data have been captured, archived and analyzed. Sensors, algorithms and processing systems for transforming and analyzing the data are evolving over time. Web Portals and Services can create transient data sets on-demand. Data are transferred from organization to organization with additional transformations at every stage. Provenance in this context refers to the source of data and a record of the process that led to its current state. It encompasses the documentation of a variety of artifacts related to particular data. Provenance is important for understanding and using scientific datasets, and critical for independent confirmation of scientific results. Managing provenance throughout scientific data processing has gained interest lately and there are a variety of approaches. Large scale scientific datasets consisting of thousands to millions of individual data files and processes offer particular challenges. This paper uses the analogy of art history provenance to explore some of the concerns of applying provenance tracking to earth science data. It also illustrates some of the provenance issues with examples drawn from the Ozone Monitoring Instrument (OMI) Data Processing System (OMIDAPS) run at NASA's Goddard Space Flight Center by the first author.

Proven Weight Loss Methods

MedlinePlus

Fact Sheet Proven Weight Loss Methods What can weight loss do for you? Losing weight can improve your health in a number of ways. It can lower ... at www.hormone.org/Spanish . Proven Weight Loss Methods Fact Sheet www.hormone.org

Results of 1938 IUFRO Scotch pine provenance test in New York

Treesearch

Ernst J. Schreiner; E. W. Littlefield; E. J. Eliason

1961-01-01

The International Union of Forest Research Organizations (IUFRO) has sponsored several international provenance tests. This is a report on the practical aspects of an IUFRO provenance test with Scotch pine in New York.

Photosynthetic capacity and leaf nitrogen decline along a controlled climate gradient in provenances of two widely distributed Eucalyptus species.

PubMed

Crous, Kristine Y; Drake, John E; Aspinwall, Michael J; Sharwood, Robert E; Tjoelker, Mark G; Ghannoum, Oula

2018-05-27

Climate is an important factor limiting tree distributions and adaptation to different thermal environments may influence how tree populations respond to climate warming. Given the current rate of warming, it has been hypothesized that tree populations in warmer, more thermally stable climates may have limited capacity to respond physiologically to warming compared to populations from cooler, more seasonal climates. We determined in a controlled environment how several provenances of widely distributed Eucalyptus tereticornis and E. grandis adjusted their photosynthetic capacity to +3.5°C warming along their native distribution range (~16-38°S) and whether climate of seed origin of the provenances influenced their response to different growth temperatures. We also tested how temperature optima (T opt ) of photosynthesis and J max responded to higher growth temperatures. Our results showed increased photosynthesis rates at a standardized temperature with warming in temperate provenances, while rates in tropical provenances were reduced by about 40% compared to their temperate counterparts. Temperature optima of photosynthesis increased as provenances were exposed to warmer growth temperatures. Both species had ~30% reduced photosynthetic capacity in tropical and subtropical provenances related to reduced leaf nitrogen and leaf Rubisco content compared to temperate provenances. Tropical provenances operated closer to their thermal optimum and came within 3% of the T opt of J max during the daily temperature maxima. Hence, further warming may negatively affect C uptake and tree growth in warmer climates, whereas eucalypts in cooler climates may benefit from moderate warming. © 2018 John Wiley & Sons Ltd.

FHIR Healthcare Directories: Adopting Shared Interfaces to Achieve Interoperable Medical Device Data Integration.

PubMed

Tyndall, Timothy; Tyndall, Ayami

2018-01-01

Healthcare directories are vital for interoperability among healthcare providers, researchers and patients. Past efforts at directory services have not provided the tools to allow integration of the diverse data sources. Many are overly strict, incompatible with legacy databases, and do not provide Data Provenance. A more architecture-independent system is needed to enable secure, GDPR-compatible (8) service discovery across organizational boundaries. We review our development of a portable Data Provenance Toolkit supporting provenance within Health Information Exchange (HIE) systems. The Toolkit has been integrated with client software and successfully leveraged in clinical data integration. The Toolkit validates provenance stored in a Blockchain or Directory record and creates provenance signatures, providing standardized provenance that moves with the data. This healthcare directory suite implements discovery of healthcare data by HIE and EHR systems via FHIR. Shortcomings of past directory efforts include the ability to map complex datasets and enabling interoperability via exchange endpoint discovery. By delivering data without dictating how it is stored we improve exchange and facilitate discovery on a multi-national level through open source, fully interoperable tools. With the development of Data Provenance resources we enhance exchange and improve security and usability throughout the health data continuum.

Lightweight Provenance Service for High-Performance Computing

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dai, Dong; Chen, Yong; Carns, Philip

Provenance describes detailed information about the history of a piece of data, containing the relationships among elements such as users, processes, jobs, and workflows that contribute to the existence of data. Provenance is key to supporting many data management functionalities that are increasingly important in operations such as identifying data sources, parameters, or assumptions behind a given result; auditing data usage; or understanding details about how inputs are transformed into outputs. Despite its importance, however, provenance support is largely underdeveloped in highly parallel architectures and systems. One major challenge is the demanding requirements of providing provenance service in situ. Themore » need to remain lightweight and to be always on often conflicts with the need to be transparent and offer an accurate catalog of details regarding the applications and systems. To tackle this challenge, we introduce a lightweight provenance service, called LPS, for high-performance computing (HPC) systems. LPS leverages a kernel instrument mechanism to achieve transparency and introduces representative execution and flexible granularity to capture comprehensive provenance with controllable overhead. Extensive evaluations and use cases have confirmed its efficiency and usability. We believe that LPS can be integrated into current and future HPC systems to support a variety of data management needs.« less

40 CFR 63.90 - Program overview.

Code of Federal Regulations, 2011 CFR

2011-07-01

... “proven technology” (generally accepted by the scientific community as equivalent or better) that is... enforceable test method involving “proven technology” (generally accepted by the scientific community as... interest; and (3) “Combining” a federally required method with another proven method for application to...

40 CFR 63.90 - Program overview.

Code of Federal Regulations, 2010 CFR

2010-07-01

... “proven technology” (generally accepted by the scientific community as equivalent or better) that is... enforceable test method involving “proven technology” (generally accepted by the scientific community as... interest; and (3) “Combining” a federally required method with another proven method for application to...

DOE Office of Scientific and Technical Information (OSTI.GOV)

Anuar, Nuraslinda, E-mail: nuraslinda@uniten.edu.my; Kahar, Wan Shakirah Wan Abdul, E-mail: shakirah@tnb.com.my; Manan, Jamal Abdul Nasir Abd

Developing countries that are considering the deployment of nuclear power plants (NPPs) in the near future need to perform reactor technology assessment (RTA) in order to select the most suitable reactor design. The International Atomic Energy Agency (IAEA) reported in the Common User Considerations (CUC) document that “proven technology” is one of the most important technical criteria for newcomer countries in performing the RTA. The qualitative description of five desired features for “proven technology” is relatively broad and only provides a general guideline to its characterization. This paper proposes a methodology to define the “proven technology” term according to amore » specific country’s requirements using a three-stage evaluation process. The first evaluation stage screens the available technologies in the market against a predefined minimum Technology Readiness Level (TRL) derived as a condition based on national needs and policy objectives. The result is a list of technology options, which are then assessed in the second evaluation stage against quantitative definitions of CUC desired features for proven technology. The potential technology candidates produced from this evaluation is further narrowed down to obtain a list of proven technology candidates by assessing them against selected risk criteria and the established maximum allowable total score using a scoring matrix. The outcome of this methodology is the proven technology candidates selected using an accurate definition of “proven technology” that fulfills the policy objectives, national needs and risk, and country-specific CUC desired features of the country that performs this assessment. A simplified assessment for Malaysia is carried out to demonstrate and suggest the use of the proposed methodology. In this exercise, ABWR, AP1000, APR1400 and EPR designs assumed the top-ranks of proven technology candidates according to Malaysia’s definition of “proven technology”.« less

Data Provenance Hybridization Supporting Extreme-Scale Scientific WorkflowApplications

DOE Office of Scientific and Technical Information (OSTI.GOV)

Elsethagen, Todd O.; Stephan, Eric G.; Raju, Bibi

As high performance computing (HPC) infrastructures continue to grow in capability and complexity, so do the applications that they serve. HPC and distributed-area computing (DAC) (e.g. grid and cloud) users are looking increasingly toward workflow solutions to orchestrate their complex application coupling, pre- and post-processing needs To gain insight and a more quantitative understanding of a workflow’s performance our method includes not only the capture of traditional provenance information, but also the capture and integration of system environment metrics helping to give context and explanation for a workflow’s execution. In this paper, we describe IPPD’s provenance management solution (ProvEn) andmore » its hybrid data store combining both of these data provenance perspectives.« less

Provenance Usage in the OceanLink Project

NASA Astrophysics Data System (ADS)

Narock, T.; Arko, R. A.; Carbotte, S. M.; Chandler, C. L.; Cheatham, M.; Fils, D.; Finin, T.; Hitzler, P.; Janowicz, K.; Jones, M.; Krisnadhi, A.; Lehnert, K. A.; Mickle, A.; Raymond, L. M.; Schildhauer, M.; Shepherd, A.; Wiebe, P. H.

2014-12-01

A wide spectrum of maturing methods and tools, collectively characterized as the Semantic Web, is helping to vastly improve thedissemination of scientific research. The OceanLink project, an NSF EarthCube Building Block, is utilizing semantic technologies tointegrate geoscience data repositories, library holdings, conference abstracts, and funded research awards. Provenance is a vital componentin meeting both the scientific and engineering requirements of OceanLink. Provenance plays a key role in justification and understanding when presenting users with results aggregated from multiple sources. In the engineering sense, provenance enables the identification of new data and the ability to determine which data sources to query. Additionally, OceanLink will leverage human and machine computation for crowdsourcing, text mining, and co-reference resolution. The results of these computations, and their associated provenance, will be folded back into the constituent systems to continually enhance precision and utility. We will touch on the various roles provenance is playing in OceanLink as well as present our use of the PROV Ontology and associated Ontology Design Patterns.

Twenty-year performance in a white oak provenance test

Treesearch

Philip A. O' Connor

2005-01-01

In 1983 a limited-range provenance test for white oak (Quercus alba L.) was established at the Starve Hollow SRA in cooperation with the North Central Forest Experiment Station. The planting was made up of half-sib progeny of nine families/provenances representing six states from Mississippi through Minnesota.

Provenance Storage, Querying, and Visualization in PBase

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kianmajd, Parisa; Ludascher, Bertram; Missier, Paolo

2015-01-01

We present PBase, a repository for scientific workflows and their corresponding provenance information that facilitates the sharing of experiments among the scientific community. PBase is interoperable since it uses ProvONE, a standard provenance model for scientific workflows. Workflows and traces are stored in RDF, and with the support of SPARQL and the tree cover encoding, the repository provides a scalable infrastructure for querying the provenance data. Furthermore, through its user interface, it is possible to: visualize workflows and execution traces; visualize reachability relations within these traces; issue SPARQL queries; and visualize query results.

Restful Implementation of Catalogue Service for Geospatial Data Provenance

NASA Astrophysics Data System (ADS)

Jiang, L. C.; Yue, P.; Lu, X. C.

2013-10-01

Provenance, also known as lineage, is important in understanding the derivation history of data products. Geospatial data provenance helps data consumers to evaluate the quality and reliability of geospatial data. In a service-oriented environment, where data are often consumed or produced by distributed services, provenance could be managed by following the same service-oriented paradigm. The Open Geospatial Consortium (OGC) Catalogue Service for the Web (CSW) is used for the registration and query of geospatial data provenance by extending ebXML Registry Information Model (ebRIM). Recent advance of the REpresentational State Transfer (REST) paradigm has shown great promise for the easy integration of distributed resources. RESTful Web Service aims to provide a standard way for Web clients to communicate with servers based on REST principles. The existing approach for provenance catalogue service could be improved by adopting the RESTful design. This paper presents the design and implementation of a catalogue service for geospatial data provenance following RESTful architecture style. A middleware named REST Converter is added on the top of the legacy catalogue service to support a RESTful style interface. The REST Converter is composed of a resource request dispatcher and six resource handlers. A prototype service is developed to demonstrate the applicability of the approach.

Variation in short-term and long-term responses of photosynthesis and isoprenoid-mediated photoprotection to soil water availability in four Douglas-fir provenances

PubMed Central

Junker, Laura Verena; Kleiber, Anita; Jansen, Kirstin; Wildhagen, Henning; Hess, Moritz; Kayler, Zachary; Kammerer, Bernd; Schnitzler, Jörg-Peter; Kreuzwieser, Jürgen; Gessler, Arthur; Ensminger, Ingo

2017-01-01

For long-lived forest tree species, the understanding of intraspecific variation among populations and their response to water availability can reveal their ability to cope with and adapt to climate change. Dissipation of excess excitation energy, mediated by photoprotective isoprenoids, is an important defense mechanism against drought and high light when photosynthesis is hampered. We used 50-year-old Douglas-fir trees of four provenances at two common garden experiments to characterize provenance-specific variation in photosynthesis and photoprotective mechanisms mediated by essential and non-essential isoprenoids in response to soil water availability and solar radiation. All provenances revealed uniform photoprotective responses to high solar radiation, including increased de-epoxidation of photoprotective xanthophyll cycle pigments and enhanced emission of volatile monoterpenes. In contrast, we observed differences between provenances in response to drought, where provenances sustaining higher CO2 assimilation rates also revealed increased water-use efficiency, carotenoid-chlorophyll ratios, pools of xanthophyll cycle pigments, β-carotene and stored monoterpenes. Our results demonstrate that local adaptation to contrasting habitats affected chlorophyll-carotenoid ratios, pool sizes of photoprotective xanthophylls, β-carotene, and stored volatile isoprenoids. We conclude that intraspecific variation in isoprenoid-mediated photoprotective mechanisms contributes to the adaptive potential of Douglas-fir provenances to climate change. PMID:28071755

Persistent identifiers for web service requests relying on a provenance ontology design pattern

NASA Astrophysics Data System (ADS)

Car, Nicholas; Wang, Jingbo; Wyborn, Lesley; Si, Wei

2016-04-01

Delivering provenance information for datasets produced from static inputs is relatively straightforward: we represent the processing actions and data flow using provenance ontologies and link to stored copies of the inputs stored in repositories. If appropriate detail is given, the provenance information can then describe what actions have occurred (transparency) and enable reproducibility. When web service-generated data is used by a process to create a dataset instead of a static inputs, we need to use sophisticated provenance representations of the web service request as we can no longer just link to data stored in a repository. A graph-based provenance representation, such as the W3C's PROV standard, can be used to model the web service request as a single conceptual dataset and also as a small workflow with a number of components within the same provenance report. This dual representation does more than just allow simplified or detailed views of a dataset's production to be used where appropriate. It also allow persistent identifiers to be assigned to instances of a web service requests, thus enabling one form of dynamic data citation, and for those identifiers to resolve to whatever level of detail implementers think appropriate in order for that web service request to be reproduced. In this presentation we detail our reasoning in representing web service requests as small workflows. In outline, this stems from the idea that web service requests are perdurant things and in order to most easily persist knowledge of them for provenance, we should represent them as a nexus of relationships between endurant things, such as datasets and knowledge of particular system types, as these endurant things are far easier to persist. We also describe the ontology design pattern that we use to represent workflows in general and how we apply it to different types of web service requests. We give examples of specific web service requests instances that were made by systems at Australia's National Computing Infrastructure and show how one can 'click' through provenance interfaces to see the dual representations of the requests using provenance management tooling we have built.

Ten-year performance of ponderosa pine provenances in the Great Plains of North America

Treesearch

Ralph A. Read

1983-01-01

A cluster and discriminant analysis based on nine of the best plantations, partitioned the seed provenance populations into six geographic clusters according to their consistency of performance in the plantations.The Northcentral Nebraska cluster of three provenances performed consistently well above average in all plantations. These easternmost...

The New Zealand douglas-fir breeding program: proposed adjustments for a changing climate

Treesearch

Heidi Dungey; Charlie Low; Mark Miller; Kane Fleet; Alvin D. Yanchuk

2012-01-01

Genetic improvement of Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) in New Zealand was initiated in 1955 with large provenance trials established in the late 1950s. These trials showed that material of Oregon and Californian origin was growing faster than other provenances. Additional collections were made to further evaluate provenance...

Computational provenance in hydrologic science: a snow mapping example.

PubMed

Dozier, Jeff; Frew, James

2009-03-13

Computational provenance--a record of the antecedents and processing history of digital information--is key to properly documenting computer-based scientific research. To support investigations in hydrologic science, we produce the daily fractional snow-covered area from NASA's moderate-resolution imaging spectroradiometer (MODIS). From the MODIS reflectance data in seven wavelengths, we estimate the fraction of each 500 m pixel that snow covers. The daily products have data gaps and errors because of cloud cover and sensor viewing geometry, so we interpolate and smooth to produce our best estimate of the daily snow cover. To manage the data, we have developed the Earth System Science Server (ES3), a software environment for data-intensive Earth science, with unique capabilities for automatically and transparently capturing and managing the provenance of arbitrary computations. Transparent acquisition avoids the scientists having to express their computations in specific languages or schemas in order for provenance to be acquired and maintained. ES3 models provenance as relationships between processes and their input and output files. It is particularly suited to capturing the provenance of an evolving algorithm whose components span multiple languages and execution environments.

Impact of rhizobial inoculation on Acacia senegal (L.) Willd. growth in greenhouse and soil functioning in relation to seed provenance and soil origin.

PubMed

Bakhoum, Niokhor; Ndoye, Fatou; Kane, Aboubacry; Assigbetse, Komi; Fall, Dioumacor; Sylla, Samba Ndao; Noba, Kandioura; Diouf, Diégane

2012-07-01

Rhizobial inoculation has a positive impact on plants growth; however, there is little information about its effect on soil microbial communities and their activity in the rhizosphere. It was therefore necessary to test the effect of inoculation of Acacia senegal (L.) Willd. seedlings with selected rhizobia on plant growth, structure and diversity of soil bacterial communities and soil functioning in relation to plant provenance and soil origin. In order to carry out this experiment, three A. senegal seeds provenance from Kenya, Niger, and Senegal were inoculated with selected rhizobial strains. They have been further grown during 4 months in greenhouse conditions in two non-disinfected soils, Dahra and Goudiry coming respectively from arid and semi-arid areas. The principal component analysis (ACP) showed an inoculation effect on plant growth, rhizospheric bacterial diversity and soil functioning. However, the performances of the rhizobial strains varied in relation to the seed provenance and the soil origin. The selected rhizobial strains, the A. senegal provenance and the soil origin have modified the structure and the diversity of soil bacterial communities as measured by principal component analysis/denaturing gradient gel electrophoresis analyses. It is interesting to note that bacterial communities of Dahra soil were highly structured according to A. senegal provenance, whereas they were structured in relation to rhizobial inoculation in Goudiry soil. Besides, the impact of inoculation on soil microbial activities measured by fluorescein diacetate analyses varied in relation to plant provenance and soil origin. Nevertheless, total microbial activity was about two times higher in Goudiry, arid soil than in Dahra, semi-arid soil. Our results suggest that the rhizobial inoculation is a suitable tool for improving plants growth and soil fertility. Yet, the impact is dependent on inoculants, plant provenance and soil origin. It will, therefore, be crucial to identify the appropriate rhizobial strains and plant provenance or species in relation to the soil type.

Connecting Provenance with Semantic Descriptions in the NASA Earth Exchange (NEX)

NASA Astrophysics Data System (ADS)

Votava, P.; Michaelis, A.; Nemani, R. R.

2012-12-01

NASA Earth Exchange (NEX) is a data, modeling and knowledge collaboratory that houses NASA satellite data, climate data and ancillary data where a focused community may come together to share modeling and analysis codes, scientific results, knowledge and expertise on a centralized platform. Some of the main goals of NEX are transparency and repeatability and to that extent we have been adding components that enable tracking of provenance of both scientific processes and datasets produced by these processes. As scientific processes become more complex, they are often developed collaboratively and it becomes increasingly important for the research team to be able to track the development of the process and the datasets that are produced along the way. Additionally, we want to be able to link the processes and the datasets developed on NEX to an existing information and knowledge, so that the users can query and compare the provenance of any dataset or process with regard to the component-specific attributes such as data quality, geographic location, related publications, user comments and annotations etc. We have developed several ontologies that describe datasets and workflow components available on NEX using the OWL ontology language as well as a simple ontology that provides linking mechanism to the collected provenance information. The provenance is captured in two ways - we utilize existing provenance infrastructure of VisTrails, which is used as a workflow engine on NEX, and we extend the captured provenance using the PROV data model expressed through the PROV-O ontology. We do this in order to link and query the provenance easier in the context of the existing NEX information and knowledge. The captured provenance graph is processed and stored using RDFlib with MySQL backend that can be queried using either RDFLib or SPARQL. As a concrete example, we show how this information is captured during anomaly detection process in large satellite datasets.

Variation in short-term and long-term responses of photosynthesis and isoprenoid-mediated photoprotection to soil water availability in four Douglas-fir provenances

DOE PAGES

Junker, Laura Verena; Kleiber, Anita; Jansen, Kirstin; ...

2017-01-10

For long-lived forest tree species, the understanding of intraspecific variation among populations and their response to water availability can reveal their ability to cope with and adapt to climate change. Dissipation of excess excitation energy, mediated by photoprotective isoprenoids, is an important defense mechanism against drought and high light when photosynthesis is hampered. We used 50-year-old Douglas-fir trees of four provenances at two common garden experiments to characterize provenance-specific variation in photosynthesis and photoprotective mechanisms mediated by essential and non-essential isoprenoids in response to soil water availability and solar radiation. All provenances revealed uniform photoprotective responses to high solar radiation,more » including increased de-epoxidation of photoprotective xanthophyll cycle pigments and enhanced emission of volatile monoterpenes. In contrast, we observed differences between provenances in response to drought, where provenances sustaining higher CO2 assimilation rates also revealed increased water-use efficiency, carotenoid-chlorophyll ratios, pools of xanthophyll cycle pigments, β-carotene and stored monoterpenes. Our results demonstrate that local adaptation to contrasting habitats affected chlorophyll-carotenoid ratios, pool sizes of photoprotective xanthophylls, β-carotene, and stored volatile isoprenoids. We conclude that intraspecific variation in isoprenoid-mediated photoprotective mechanisms contributes to the adaptive potential of Douglas-fir provenances to climate change.« less

Variation in short-term and long-term responses of photosynthesis and isoprenoid-mediated photoprotection to soil water availability in four Douglas-fir provenances

DOE Office of Scientific and Technical Information (OSTI.GOV)

Junker, Laura Verena; Kleiber, Anita; Jansen, Kirstin

For long-lived forest tree species, the understanding of intraspecific variation among populations and their response to water availability can reveal their ability to cope with and adapt to climate change. Dissipation of excess excitation energy, mediated by photoprotective isoprenoids, is an important defense mechanism against drought and high light when photosynthesis is hampered. We used 50-year-old Douglas-fir trees of four provenances at two common garden experiments to characterize provenance-specific variation in photosynthesis and photoprotective mechanisms mediated by essential and non-essential isoprenoids in response to soil water availability and solar radiation. All provenances revealed uniform photoprotective responses to high solar radiation,more » including increased de-epoxidation of photoprotective xanthophyll cycle pigments and enhanced emission of volatile monoterpenes. In contrast, we observed differences between provenances in response to drought, where provenances sustaining higher CO2 assimilation rates also revealed increased water-use efficiency, carotenoid-chlorophyll ratios, pools of xanthophyll cycle pigments, β-carotene and stored monoterpenes. Our results demonstrate that local adaptation to contrasting habitats affected chlorophyll-carotenoid ratios, pool sizes of photoprotective xanthophylls, β-carotene, and stored volatile isoprenoids. We conclude that intraspecific variation in isoprenoid-mediated photoprotective mechanisms contributes to the adaptive potential of Douglas-fir provenances to climate change.« less

Five-year results of a ponderosa pine provenance study in the Black Hills

Treesearch

James L. Van Deusen

1974-01-01

Survival and height growth data were collected after five field growing seasons from ponderosa pine progeny representing 75 provenances of natural stands in the Great Plains and Northern Rockies. Results showed that trees from no other provenance survived significantly better or grew significantly taller than trees from the Black Hills. Trees from southern Colorado,...

The problem of site variation within red pine provenance experiments

Treesearch

Mark J. Holst

1966-01-01

In spite of care taken in the selection of site and experimental design of provenance experiments, site heterogenity within the experimental area may be more complex than was anticipated when the experiment was established. The present paper describes a problem of this nature encountered in a red pine (Pinus resinosa Ait.) provenance experiment at...

Adaptation of eastern whitepine provenances to planting sites

Treesearch

Maurice E., Jr. Demeritt; Peter W. Garrett

1996-01-01

Eastern white pine provenances from the extreme limits of the natural range of this species are changing from above- and below-average stability to average stability for height growth with increasing age. The regression method is useful for evaluating the stability of provenance to planting sites. The same general conclusions are reached for the performance at...

Genetic variation in ponderosa pine: A 15-year test of provenances in the Great Plains

Treesearch

David F. Van Haverbeke

1986-01-01

Survival was highest and height growth greatest in ponderosa pine provenances from northcentral Nebraska, southwest South Dakota, and the High Plains region. Genotype x environment interaction was minimal in central and northern Great Plains plantations. Age/age correlations indicate provenances expressing superior height growth can be identified after 5 or 10 years....

Sugar maple provenance study: West Virginia outplanting - 10-year results

Treesearch

G. W. Wendel; W. J. Gabriel

1980-01-01

After 10 years, survival of sugar maple (Acer saccharum Marsh.) provenances outplanted in West Virginia did not differ significantly. Total height, height growth and dbh measurements were significantly different among provenances. Fifty percent of the trees had major forks below 9.0 feet. Thirty-eight percent of the trees had no forks but 71 percent...

Performance of Australian provenances of Eucalyptus grandis and Eucalyptus saligna in Hawaii

Treesearch

Roger G. Skolmen

1986-01-01

Australian provenances of Eucalyptus grandis and E. saligna were compared at four locations on the island of Hawaii to seek seed sources better than those in current use which were introduced earlier from unrecorded locations in Australia. A broad range of latitude and elevation was represented among the provenances. At all four...

Provenance variation in Eucalyptus camaldulensis Dehnh. in California

Treesearch

B.M. Emery; F. Thomas Ledig

1987-01-01

In California, the Lake Albacutya provenance of river red gum was clearly superior in volume growth to 22 other provenances collected throughout the range of the species in Australia. It had at least 2.5 times the volume of the plantation mean at 5.5 years, consistent with its performance in other countries with Mediterranean climates like California's. Other...

Tracing dust provenance in paleoclimate records using mineralogical and isotopic fingerprints: additional clues from present-day studies

NASA Astrophysics Data System (ADS)

Bory, A. J.; Skonieczny, C.; Bout-Roumazeilles, V.; Grousset, F. E.; Biscaye, P. E.

2011-12-01

Dust records retrieved from ice and sediment cores represent some of our most valuable evidence for modifications of atmospheric circulation on various times scales over the last few Pleistocene glacial and interglacial climate cycles. These data also contribute to the documentation of changes in continental paleo-environments (e.g., changes in aridity), changes in iron inputs to the ocean, as well as changes in the hydrological cycle. Interpreting ice and sediment-core dust records, and using them for modelling purposes, requires firstly a good understanding of the dust provenance and its possible temporal variability. Specific intrinsic tracers such as clay mineralogy, major and trace elements, and radiogenic isotopes (strontium, neodymium, lead) have been used for this purpose, with variable effectiveness. One difficulty lies in the fact that these measurements require significant amount of mineral particles and can thus only be obtained at low temporal resolution, either because of the low dust concentration in ice cores or because of the low mass accumulation rates and bioturbation in marine sediments. As a result, dust samples extracted from ice and sediment cores for provenance investigation average long periods of time and may reflect mixtures from various source areas, complicating the interpretation of the data. Still, provenance tracers (clay mineralogy and Sr-Nd isotopes in particular) made possible for instance the discrimination of which continents provided most of the dust deposited in remote locations such as Greenland and Antarctica during the dusty glacial stages. The locations of the contributing source areas, however, were not precisely identified. During the low-dust, interglacial periods, provenance has proven more difficult to establish unambiguously, even at broad (i.e., continental) geographic scales. In other aeolian deposits, such as Asian loess or marine sediments off West Africa, the provenance of the dust is still poorly constrained, despite the fact that these archives are located close to the highest dust-emission areas in the world. Characterization of dust provenance (using mineralogical and isotopic fingerprints) at present, which can be achieved at much higher resolution and benefit from remote sensing data and well-constrained GMC outputs, may provide valuable clues for our understanding of dust provenance in paleoclimate records. We review some investigations carried out in Greenland and Antarctica over the last decade, and present new results from the West African margin. We discuss the extent to which these present-day time series may help us calibrating our paleo-dust provenance proxies, and improving our understanding of dust provenance in paleoclimate records.

Genetic variation, phenotypic stability, and repeatability of drought response in European larch throughout 50 years in a common garden experiment

PubMed Central

George, Jan-Peter; Grabner, Michael; Karanitsch-Ackerl, Sandra; Mayer, Konrad; Weißenbacher, Lambert; Schueler, Silvio

2017-01-01

Abstract Assessing intra-specific variation in drought stress response is required to mitigate the consequences of climate change on forest ecosystems. Previous studies suggest that European larch (Larix decidua Mill.), an important European conifer in mountainous and alpine forests, is highly vulnerable to drought. In light of this, we estimated the genetic variation in drought sensitivity and its degree of genetic determination in a 50-year-old common garden experiment in the drought-prone northeastern Austria. Tree ring data from larch provenances originating from across the species' natural range were used to estimate the drought reaction in four consecutive drought events (1977, 1981, 1990–1994, and 2003) with extremely low standardized precipitation- and evapotranspiration-index values that affected growth in all provenances. We found significant differences among provenances across the four drought periods for the trees’ capacity to withstand drought (resistance) and for their capacity to reach pre-drought growth levels after drought (resilience). Provenances from the species' northern distribution limit in the Polish lowlands were found to be more drought resistant and showed higher stability across all drought periods than provenances from mountainous habitats at the southern fringe. The degree of genetic determination, as estimated by the repeatability, ranged up to 0.39, but significantly differed among provenances, indicating varying degrees of natural selection at the provenance origin. Generally, the relationship between the provenances’ source climate and drought behavior was weak, suggesting that the contrasting patterns of drought response are a result of both genetic divergence out of different refugial lineages and local adaptation to summer or winter drought conditions. Our analysis suggests that European larch posseses high genetic variation among and within provenances that can be used for assisted migration and breeding programs. PMID:28173601

Comparative study of the detection of joint injury in early-stage rheumatoid arthritis by magnetic resonance imaging of the wrist and finger joints and physical examination.

PubMed

Tamai, Mami; Kawakami, Atsushi; Iwamoto, Naoki; Kawashiri, Shin-Ya; Fujikawa, Keita; Aramaki, Toshiyuki; Kita, Junko; Okada, Akitomo; Koga, Tomohiro; Arima, Kazuhiko; Kamachi, Makoto; Yamasaki, Satoshi; Nakamura, Hideki; Ida, Hiroaki; Origuchi, Tomoki; Takao, Shoichiro; Aoyagi, Kiyoshi; Uetani, Masataka; Eguchi, Katsumi

2011-03-01

To verify whether magnetic resonance imaging (MRI)-proven joint injury is sensitive as compared with joint injury determined by physical examination. MRI of the wrist and finger joints of both hands was examined in 51 early-stage rheumatoid arthritis (RA) patients by both plain and gadolinium diethylenetriaminepentaacetic acid-enhanced MRI. Synovitis, bone edema, and bone erosion (the latter two included as bone lesions at the wrist joints); metacarpophalangeal joints; and proximal interphalangeal joints were considered as MRI-proven joint injury. Japan College of Rheumatology-certified rheumatologists had given a physical examination just before the MRI study. The presence of tender and/or swollen joints in the same fields as MRI was considered as joint injury on physical examination. The association of MRI-proven joint injury with physical examination-proven joint injury was examined. A total of 1,110 sites were available to be examined. MRI-proven joint injury was found in 521 sites, whereas the other 589 sites were normal. Physical examination-proven joint injury was found in 305 sites, which was significantly low as compared with MRI-proven joint injury (P = 1.1 × 10(-12) versus MRI). Joint injury on physical examination was not found in 81.5% of the sites where MRI findings were normal. Furthermore, an association of the severity of MRI-proven joint injury with that of joint injury on physical examination was clearly demonstrated (P = 1.6 × 10(-15), r(s) = 0.469). Our present data suggest that MRI is not only sensitive but accurately reflects the joint injury in patients with early-stage RA. Copyright © 2011 by the American College of Rheumatology.

Survival and growth patterns of white spruce (Picea glauca [Moench] Voss) rangewide provenances and their implications for climate change adaptation

PubMed Central

Lu, Pengxin; Parker, William H; Cherry, Marilyn; Colombo, Steve; Parker, William C; Man, Rongzhou; Roubal, Ngaire

2014-01-01

Intraspecific assisted migration (ISAM) through seed transfer during artificial forest regeneration has been suggested as an adaptation strategy to enhance forest resilience and productivity under future climate. In this study, we assessed the risks and benefits of ISAM in white spruce based on long-term and multilocation, rangewide provenance test data. Our results indicate that the adaptive capacity and growth potential of white spruce varied considerably among 245 range-wide provenances sampled across North America; however, the results revealed that local populations could be outperformed by nonlocal ones. Provenances originating from south-central Ontario and southwestern Québec, Canada, close to the southern edge of the species' natural distribution, demonstrated superior growth in more northerly environments compared with local populations and performed much better than populations from western Canada and Alaska, United States. During the 19–28 years between planting and measurement, the southern provenances have not been more susceptible to freezing damage compared with local populations, indicating they have the potential to be used now for the reforestation of more northerly planting sites; based on changing temperature, these seed sources potentially could maintain or increase white spruce productivity at or above historical levels at northern sites. A universal response function (URF), which uses climatic variables to predict provenance performance across field trials, indicated a relatively weak relationship between provenance performance and the climate at provenance origin. Consequently, the URF from this study did not provide information useful to ISAM. The ecological and economic importance of conserving white spruce genetic resources in south-central Ontario and southwestern Québec for use in ISAM is discussed. PMID:25360273

Survival and growth patterns of white spruce (Picea glauca [Moench] Voss) rangewide provenances and their implications for climate change adaptation.

PubMed

Lu, Pengxin; Parker, William H; Cherry, Marilyn; Colombo, Steve; Parker, William C; Man, Rongzhou; Roubal, Ngaire

2014-06-01

Intraspecific assisted migration (ISAM) through seed transfer during artificial forest regeneration has been suggested as an adaptation strategy to enhance forest resilience and productivity under future climate. In this study, we assessed the risks and benefits of ISAM in white spruce based on long-term and multilocation, rangewide provenance test data. Our results indicate that the adaptive capacity and growth potential of white spruce varied considerably among 245 range-wide provenances sampled across North America; however, the results revealed that local populations could be outperformed by nonlocal ones. Provenances originating from south-central Ontario and southwestern Québec, Canada, close to the southern edge of the species' natural distribution, demonstrated superior growth in more northerly environments compared with local populations and performed much better than populations from western Canada and Alaska, United States. During the 19-28 years between planting and measurement, the southern provenances have not been more susceptible to freezing damage compared with local populations, indicating they have the potential to be used now for the reforestation of more northerly planting sites; based on changing temperature, these seed sources potentially could maintain or increase white spruce productivity at or above historical levels at northern sites. A universal response function (URF), which uses climatic variables to predict provenance performance across field trials, indicated a relatively weak relationship between provenance performance and the climate at provenance origin. Consequently, the URF from this study did not provide information useful to ISAM. The ecological and economic importance of conserving white spruce genetic resources in south-central Ontario and southwestern Québec for use in ISAM is discussed.

On the Faceting and Linking of PROV for Earth Science Data Systems

NASA Astrophysics Data System (ADS)

Hua, H.; Manipon, G.; Wilson, B. D.; Tan, D.; Starch, M.

2015-12-01

Faceted search has yielded powerful capabilities for discovery of information by applying multiple filters to explore information. This is often more effective when the information is decomposed into faceted components that can be sliced and diced during faceted navigation. We apply this approach to the representation of PROV for Earth Science (PROV-ES) to facilitate more atomic units of provenance for discovery. Traditional bundles of PROV are then decomposed to enable finer-grain discovery of provenance. Linkages across provenance components can then be explored across seemingly disparate bundles. We will show how mappings into this provenance approach can be used to explore more data life-cycle relationships from observation to data to findings. We will also show examples of how this approach can be used to improve the discovery, access, and transparency of NASA datasets and the science data systems that were used to capture, manage, and produce the provenance information.

Survival, growth, and juvenile-mature correlations in a West Virginia sugar maple provenance test 25 years after establishment

Treesearch

Thomas M. Schuler

1994-01-01

Survival, total height, diameter at breast height (d.b.h.), and stem quality of sugar maple trees of different provenances were compared 25 years after establishment in north-central West Virginia. Provenances were from Michigan, Minnesota, West Virginia, Massachusetts, New Hampshire, Vermont, Maine, and Quebec, Canada. There were significant differences between...

Implications of research on lodgepole pine introduction in interior Alaska.

Treesearch

John N. Alden

1988-01-01

Growth, winter injury, and mortality were evaluated for 12-year-old trees of 11 subarctic lodgepole pine provenances and a jack pine provenance at Fairbanks, Alaska. Provenances from northeast British Columbia grew more than 0.003 cubic meter of wood per tree annually from 9 to 12 years after outplanting. The species sustained snow damage and winter injury, however,...

Survival and height growth of northern white-cedar from 18 provenances

Treesearch

Richard M. Jeffers

1976-01-01

Northern white-cedar from 18 provenances was evaluated for total height in the nursery and for survival and total height in two field plantings in northern Wisconsin and in western Upper Michigan. There were significant differences among provenances in survival at one location and in height at both field locations 5 years after planting; there were no differences among...

Ontology development for provenance tracing in National Climate Assessment of the US Global Change Research Program

NASA Astrophysics Data System (ADS)

Fu, Linyun; Ma, Xiaogang; Zheng, Jin; Goldstein, Justin; Duggan, Brian; West, Patrick; Aulenbach, Steve; Tilmes, Curt; Fox, Peter

2014-05-01

This poster will show how we used a case-driven iterative methodology to develop an ontology to represent the content structure and the associated provenance information in a National Climate Assessment (NCA) report of the US Global Change Research Program (USGCRP). We applied the W3C PROV-O ontology to implement a formal representation of provenance. We argue that the use case-driven, iterative development process and the application of a formal provenance ontology help efficiently incorporate domain knowledge from earth and environmental scientists in a well-structured model interoperable in the context of the Web of Data.

Douglas-fir plantations in Europe: a retrospective test of assisted migration to address climate change.

PubMed

Isaac-Renton, Miriam G; Roberts, David R; Hamann, Andreas; Spiecker, Heinrich

2014-08-01

We evaluate genetic test plantations of North American Douglas-fir provenances in Europe to quantify how tree populations respond when subjected to climate regime shifts, and we examined whether bioclimate envelope models developed for North America to guide assisted migration under climate change can retrospectively predict the success of these provenance transfers to Europe. The meta-analysis is based on long-term growth data of 2800 provenances transferred to 120 European test sites. The model was generally well suited to predict the best performing provenances along north-south gradients in Western Europe, but failed to predict superior performance of coastal North American populations under continental climate conditions in Eastern Europe. However, model projections appear appropriate when considering additional information regarding adaptation of Douglas-fir provenances to withstand frost and drought, even though the model partially fails in a validation against growth traits alone. We conclude by applying the partially validated model to climate change scenarios for Europe, demonstrating that climate trends observed over the last three decades warrant changes to current use of Douglas-fir provenances in plantation forestry throughout Western and Central Europe. © 2014 John Wiley & Sons Ltd.

MCloud: Secure Provenance for Mobile Cloud Users

DTIC Science & Technology

2016-10-03

Feasibility of Smartphone Clouds , 2015 15th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid). 04-MAY- 15, Shenzhen, China...final decision. MCloud: Secure Provenance for Mobile Cloud Users Final Report Bogdan Carbunar Florida International University Computing and...Release; Distribution Unlimited UU UU UU UU 03-10-2016 31-May-2013 30-May-2016 Final Report: MCloud: Secure Provenance for Mobile Cloud Users The views

Provenance and progeny variation in pitch pine from the Atlantic Coastal Plain

Treesearch

John E. Kuser; F. Thomas Ledig

1987-01-01

A test of open-pollinated pitch pine families from 17 different locations on the Atlantic Coastal Plain was evaluated at 12 years of age. Genetic variation for growth was almost totally on the provenance level and was detectable among families within provenances in only a few cases. Mean volume decreased with latitude and also with distance of the seed origin from the...

Secure Location Provenance for Mobile Devices

DTIC Science & Technology

2015-07-01

SECURE LOCATION PROVENANCE FOR MOBILE DEVICES UNIVERSITY OF ALABAMA AT BIRMINGHAM JULY 2015 FINAL TECHNICAL REPORT...PROVENANCE FOR MOBILE DEVICES 5a. CONTRACT NUMBER FA8750-12-2-0254 5b. GRANT NUMBER N/A 5c. PROGRAM ELEMENT NUMBER 69220K 6. AUTHOR(S) Ragib Hasan...based services allow mobile device users to access various services based on the users’ current physical location information. Path-critical applications

A Roadmap for Cybersecurity Research

DTIC Science & Technology

2009-11-01

Compile and compare existing studies relating to the insider threat. (Detect) �� Develop data collection mechanisms and collect data. (Detect...for capturing provenance. The model aims to make it easier for provenance to be exchanged between systems, to support development of provenance... It is the opinion of those involved in creating this research roadmap that government-funded research and development (R&D) must play an increasing

Genetic variation of whitebark pine (Pinus albicaulis) provenances and families from Oregon and Washington in juvenile height growth and needle color

Treesearch

Jim Hamlin; Angelia Kegley; Richard Sniezko

2011-01-01

A three year common garden study was conducted on whitebark pine (Pinus albicaulis) which included 215 families from the eight provenances or seed zones in Oregon and Washington. Total height and needle color were assessed. Height differed significantly among provenances and families, and was primarily associated with source elevation, longitude, and precipitation. A...

White oak growth after 23 Years in a three-site provenance/progeny trial on a latitudinal gradient in Indiana

Treesearch

Yen-Ning Huang; Hao Zhang; Scott Rogers; Mark Coggeshall; Keith Woeste

2015-01-01

To increase the availability of improved, adapted white oak (Quercus alba L.) for midwestern United States landowners, we analyzed data from three 23-year-old provenance/progeny tests of 70 open-pollinated progenies from 17 provenances. Our goal was to estimate the heritability of height growth and range of adaptation and ultimately to determine...

S-ProvFlow: provenance model and tools for scalable and adaptive analysis pipelines in geoscience.

NASA Astrophysics Data System (ADS)

Spinuso, A.; Mihajlovski, A.; Atkinson, M.; Filgueira, R.; Klampanos, I.; Sanchez, S.

2017-12-01

The reproducibility of scientific findings is essential to improve the quality and application of modern data-driven research. Delivering such reproducibility is challenging in the context of systems handling large data-streams with sophisticated computational methods. Similarly, the SKA (Square Kilometer Array) will collect an unprecedented volume of radio-wave signals that will have to be reduced and transformed into derived products, with impact on space-weather research. This highlights the importance of having cross-disciplines mechanisms at the producer's side that rely on usable lineage data to support validation and traceability of the new artifacts. To be informative, provenance has to describe each methods' abstractions and their implementation as mappings onto distributed platforms and their concurrent execution, capturing relevant internal dependencies at runtime. Producers and intelligent toolsets should be able to exploit the produced provenance, steering real-time monitoring activities and inferring adaptations of methods at runtime.We present a model of provenance (S-PROV) that extends W3C PROV and ProvONE, broadening coverage of provenance to aspects related to distribution, scale-up and steering of stateful streaming operators in analytic pipelines. This is supported by a technical framework for tuneable and actionable lineage, ensuring its relevance to the users' interests, fostering its rapid exploitation to facilitate research practices. By applying concepts such as provenance typing and profiling, users define rules to capture common provenance patterns and activate selective controls based on domain-metadata. The traces are recorded in a document-store with index optimisation and a web API serves advanced interactive tools (S-ProvFlow, https://github.com/KNMI/s-provenance). These allow different classes of consumers to rapidly explore the provenance data. The system, which contributes to the SKA-Link initiative, within technology and knowledge transfer events, will be discussed in the context of an existing data-intensive service for seismology (VERCE), and the newly funded project DARE - Delivering Agile Research Excellence. A generic solution for extreme data and methods in geosciences that domain experts can understand, change and use effectively.

Applying Content Management to Automated Provenance Capture

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schuchardt, Karen L.; Gibson, Tara D.; Stephan, Eric G.

2008-04-10

Workflows and data pipelines are becoming increasingly valuable in both computational and experimen-tal sciences. These automated systems are capable of generating significantly more data within the same amount of time than their manual counterparts. Automatically capturing and recording data prove-nance and annotation as part of these workflows is critical for data management, verification, and dis-semination. Our goal in addressing the provenance challenge was to develop and end-to-end system that demonstrates real-time capture, persistent content management, and ad-hoc searches of both provenance and metadata using open source software and standard protocols. We describe our prototype, which extends the Kepler workflow toolsmore » for the execution environment, the Scientific Annotation Middleware (SAM) content management software for data services, and an existing HTTP-based query protocol. Our implementation offers several unique capabilities, and through the use of standards, is able to pro-vide access to the provenance record to a variety of commonly available client tools.« less

[Genetic variation of geographical provenance of Pinus massoniana--review and analysis].

PubMed

Li, D; Peng, S

2000-04-01

Pinus massoniana is a significant tree species constituting the subtropical forests in China. Based on morphological, physio-ecological, chromosome, and molecular levels, the genetic variation of geographical provenance of P. massoniana and its distribution were reviewed, and the methodologies on genetic diversity and the genetic variation patterns of geographical provenance of P. massoniana were synthetically analyzed. The Key problems on molecular ecology of P. massoniana were discussed.

Significance of wood terpenoids in the resistance of Scots pine provenances against the old house borer, Hylotrupes bajulus, and brown-rot fungus, Coniophora puteana.

PubMed

Nerg, A M; Heijari, J; Noldt, U; Viitanen, H; Vuorinen, M; Kainulainen, P; Holopainen, J K

2004-01-01

We tested how terpenoid (i.e., monoterpenes and resin acids) composition and concentration in wood affects resistance against wood-borers and decaying fungi. Scots pine (Pinus sylvestris) wood from nine provenances having variable terpenoid profiles was studied against the old house borer, Hylotrupes bajulus, and the decay fungus, Coniophora puteana. Provenances represented a 1200-km N-S transect from Estonia to northern Finland, but they were all cultivated for 7 years in the same nursery field, in central Finland. Mean relative growth rate (MRGR) of small H. hajulus larvae positively correlated with the total monoterpene concentration of wood, and feeding was associated with high proportion of levopimaric+palustric acid in wood. Provenance did not affect the MRGR of small or big larvae, but big larvae consumed more wood and produced more frass on the northern Ylitornio trees than on the southern Rakvere and Ruokolahti trees. Low beta-pinene and total monoterpene concentration and low beta: alpha-pinene ratio in wood were all associated with a high number of eggs. The most northern Muonio provenance was the most favored as an oviposition site, differing significantly from Saaremaa, Tenhola, and Suomussalmi. Wood from Saaremaa, Tenhola, Ruokolahti, and Suomussalmi provenance was most resistant against decay fungus, differing significantly from that of Kinnula provenance. However, decay resistance was not clearly associated with the concentrations of wood terpenoids. These results suggest that monoterpene composition of wood affects resistance against wood-boring Cerambycid beetles, but resistance against wood-decaying fungi is not as clearly associated with wood terpenoids.

Impact of summer drought on isoprenoid emissions and carbon sink of three Scots pine provenances

PubMed Central

Lüpke, M.; Leuchner, M.; Steinbrecher, R.; Menzel, A.

2016-01-01

Scots pine (Pinus sylvestris L.) provenances cover broad ecological amplitudes. In a greenhouse study, we investigated the impact of drought stress and rewetting on gas exchange for three provenances (Italy: Emilia Romagna; Spain: Alto Ebro; Germany: East-German lowlands) of 2-year old Scots pine seedlings. CO2, water vapour and isoprenoid exchange of stressed and control trees were quantified with a four-chamber dynamic-enclosure system in the controlled environment of a climate chamber. The three provenances showed distinct isoprenoid emission patterns and were classified into a non-Δ3-carene, with either high α-/β-pinene or β-myrcene fraction, and a Δ3-carene dominated type. Isoprenoid emission rates, net-photosynthesis and transpiration were reduced during summer drought stress and significantly recovered after rewetting. A seasonal increase of isoprenoid emission rates towards autumn was observed for all control groups. Compared with the German provenance, the Spanish and Italian provenances revealed higher isoprenoid emission rates and more plastic responses to drought stress and seasonal development, which points to a local adaptation to climate. As a result of drought, net carbon uptake and transpiration of trees was reduced, but recovered after rewetting. We conclude from our study that Scots pine isoprenoid emission is more variable than expected and sensitive to drought periods, likely impacting regional air chemistry. Thus, a provenance-specific emission assessment accounting for reduced emission during prolonged (summer) drought is recommend for setting up biogenic volatile organic compound emission inventories used in air quality models. PMID:27591438

Provenance analysis of the Voirons Flysch (Gurnigel nappe, Haute-Savoie, France): stratigraphic and palaeogeographic implications

NASA Astrophysics Data System (ADS)

Ragusa, Jérémy; Kindler, Pascal; Segvic, Branimir; Ospina-Ostios, Lina Maria

2017-04-01

The Chablais Prealps (Haute-Savoie, France) represent a well-preserved accretionary wedge of the Western Alpine Tethys. They comprise a stack of sedimentary nappes related to palaeogeographic realms ranging from the Ultrahelvetic to the Southern Penninic. The provenance analysis is based on the Gazzi-Dickinson method and on QEMSCAN® for heavy-minerals. The Quartzose petrofacies is the most important of the two sources, and supplied three of the four formations of the Voirons Flysch. It is similar to the sources that fed the other flyschs from the Gurnigel nappe. It is characterised by a mature, quartz-rich assemblage and a heavy-mineral population dominated by apatite and the zircon-tourmaline-rutile mineral group. These observations suggest a Clastic wedge provenance. The Feldspathic petrofacies is derived from a feldspar-rich source associated with metamorphic clasts and a heavy-mineral population dominated by garnet. This provenance characterises only one formation of the Voirons Flysch, and is related to the axial belt provenance. This provenance analysis shows that the Middle Eocene to Early Oligocene Voirons Flysch was fed by two sources, in contrast to the other flyschs of the Gurnigel nappe, and further suggests that this flysch was not deposited in the Piemont Ocean but in the Valais domain. Based on the results and comparative provenance analysis with the other flyschs of the Gurnigel nappe, we propose a generic feeding model which involves the Sesia-Dent Blanche nappe, the sedimentary nappes incorporated in the accretionary prism, and probably the Briançonnais basement.

Quantification of the effects of secondary matrix on the analysis of sandstone composition, and a petrographic-chemical technique for retrieving original framework grain modes of altered sandstones.

PubMed

Cox, R; Lowe, D R

1996-05-01

Most studies of sandstone provenance involve modal analysis of framework grains using techniques that exclude the fine-grained breakdown products of labile mineral grains and rock fragments, usually termed secondary matrix or pseudomatrix. However, the data presented here demonstrate that, when the proportion of pseudomatrix in a sandstone exceeds 10%, standard petrographic analysis can lead to incorrect provenance interpretation. Petrographic schemes for provenance analysis such as QFL and QFR should not therefore be applied to sandstones containing more than 10% secondary matrix. Pseudomatrix is commonly abundant in sandstones, and this is therefore a problem for provenance analysis. The difficulty can be alleviated by the use of whole-rock chemistry in addition to petrographic analysis. Combination of chemical and point-count data permits the construction of normative compositions that approximate original framework grain compositions. Provenance analysis is also complicated in many cases by fundamental compositional alteration during weathering and transport. Many sandstones, particularly shallow marine deposits, have undergone vigorous reworking, which may destroy unstable mineral grains and rock fragments. In such cases it may not be possible to retrieve provenance information by either petrographic or chemical means. Because of this, pseudomatrix-rich sandstones should be routinely included in chemical-petrological provenance analysis. Because of the many factors, both pre- and post-depositional, that operate to increase the compositional maturity of sandstones, petrologic studies must include a complete inventory of matrix proportions, grain size and sorting parameters, and an assessment of depositional setting.

Impact of summer drought on isoprenoid emissions and carbon sink of three Scots pine provenances.

PubMed

Lüpke, M; Leuchner, M; Steinbrecher, R; Menzel, A

2016-11-01

Scots pine (Pinus sylvestris L.) provenances cover broad ecological amplitudes. In a greenhouse study, we investigated the impact of drought stress and rewetting on gas exchange for three provenances (Italy: Emilia Romagna; Spain: Alto Ebro; Germany: East-German lowlands) of 2-year old Scots pine seedlings. CO 2 , water vapour and isoprenoid exchange of stressed and control trees were quantified with a four-chamber dynamic-enclosure system in the controlled environment of a climate chamber. The three provenances showed distinct isoprenoid emission patterns and were classified into a non-Δ 3 -carene, with either high α-/β-pinene or β-myrcene fraction, and a Δ 3 -carene dominated type. Isoprenoid emission rates, net-photosynthesis and transpiration were reduced during summer drought stress and significantly recovered after rewetting. A seasonal increase of isoprenoid emission rates towards autumn was observed for all control groups. Compared with the German provenance, the Spanish and Italian provenances revealed higher isoprenoid emission rates and more plastic responses to drought stress and seasonal development, which points to a local adaptation to climate. As a result of drought, net carbon uptake and transpiration of trees was reduced, but recovered after rewetting. We conclude from our study that Scots pine isoprenoid emission is more variable than expected and sensitive to drought periods, likely impacting regional air chemistry. Thus, a provenance-specific emission assessment accounting for reduced emission during prolonged (summer) drought is recommend for setting up biogenic volatile organic compound emission inventories used in air quality models. © The Author 2016. Published by Oxford University Press.

Phorbol esters seed content and distribution in Latin American provenances of Jatropha curcas L.: potential for biopesticide, food and feed.

PubMed

Bueso, Francisco; Sosa, Italo; Chun, Roldan; Pineda, Renan

2016-01-01

Jatropha curcas L. (Jatropha) is believed to have originated from Mexico and Central America. So far, characterization efforts have focused on Asia, Africa and Mexico. Non-toxic, low phorbol ester (PE) varieties have been found only in Mexico. Differences in PE content in seeds and its structural components, crude oil and cake from Jatropha provenances cultivated in Central and South America were evaluated. Seeds were dehulled, and kernels were separated into tegmen, cotyledons and embryo for PE quantitation by RP-HPLC. Crude oil and cake PE content was also measured. No phenotypic departures in seed size and structure were observed among Jatropha cultivated in Central and South America compared to provenances from Mexico, Asia and Africa. Cotyledons comprised 96.2-97.5 %, tegmen 1.6-2.4 % and embryo represented 0.9-1.4 % of dehulled kernel. Total PE content of all nine provenances categorized them as toxic. Significant differences in kernel PE content were observed among provenances from Mexico, Central and South America (P < 0.01), being Mexican the highest (7.6 mg/g) and Cabo Verde the lowest (2.57 mg/g). All accessions had >95 % of PEs concentrated in cotyledons, 0.5-3 % in the tegmen and 0.5-1 % in the embryo. Over 60 % of total PE in dehulled kernels accumulated in the crude oil, while 35-40 % remained in the cake after extraction. Low phenotypic variability in seed physical, structural traits and PE content was observed among provenances from Latin America. Very high-PE provenances with potential as biopesticide were found in Central America. No PE-free, edible Jatropha was found among provenances currently cultivated in Central America and Brazil that could be used for human consumption and feedstock. Furthermore, dehulled kernel structural parts as well as its crude oil and cake contained toxic PE levels.

LA-ICP-MS as Tool for Provenance Analyses in Arctic Marine Sediments

NASA Astrophysics Data System (ADS)

Wildau, Antje; Garbe-Schönberg, Dieter

2015-04-01

The hydraulic transport of sediments is a major geological process in terrestrial and marine systems and is responsible for the loss, redistribution and accumulation of minerals. Provenance analyses are a powerful tool for assessing the origin and dispersion of material in ancient and modern fluvial and marine sediments. Provenance-specific heavy minerals (e.g., zircon, rutile, tourmaline) can therefore be used to provide valuable information on the formation of ore deposits (placer deposits), and the reconstruction of paleogeography, hydrology, climate conditions and developments. The application of provenances analyses for the latter reason is of specific interest, since there is need for research on the progressing climate change, and heavy minerals represent good proxies for the evaluation of recent and past changes in the climate. The study of these fine particles provides information about potential regional or long distance transport paths, glacial / ice drift and current flows, freezing and melting events as well as depositional centers for the released sediments. Classic methods applied for provenance analyses are mapping of the presence / absence of diagnostic minerals, their grain size distribution, modal mineralogy and the analysis of variations in ratio of two or more heavy minerals. Electron microprobe has been established to discover changes in mineral chemistry of individual mineral phases, which can indicate fluctuations or differences in the provenance. All these methods bear the potential of high errors that lower the validity of the provenance analyses. These are for example the misclassification of mineral species due to undistinguishable optical properties or the limitations in the detection / variations of trace elements using the election microprobe. For this case study, marine sediments from the Arctic Ocean have been selected to test if LA-ICP-MS can be established as a key technique for precise and reliable provenance analyses. The Laptev Sea is known to be a "sea ice formation factory" and represents a perfect source area with numerous sediment loaded rivers draining into the Arctic Ocean. Mineral grains become trapped in the sea ice, which is transported to the Fram Strait, the outflow area of the Transpolar Drift System. Thus, minerals in the Fram Strait and in the Laptev Sea should have the same provenance. In both areas zircon, garnet, ilmenite, magnetite, tourmaline, pyroxene and amphibole were identified (amongst others). The vast majority of potential source areas and the widespread occurrence of these accessory and rock forming minerals result in the absolute need for a highly sensitive and precise method such as LA-ICP-MS. We report new data on the eligibility of selected heavy minerals for provenance analyses in the Arctic Ocean. Based on the individual trace element composition, REE-pattern and isotopic ratios, reflecting the conditions during formation, we report individual fingerprints for single mineral species. This enables us to allocate specific minerals from Fram Strait and from Laptev Sea to one provenance. Furthermore we evaluate the eligibility of different heavy minerals as a geochemical proxy in Arctic sediments for provenance analyses using LA-ICP-MS.

Performance and genetic variation of big-leaf mahogany (Swietenia macrophylla King) in provenance and progeny trials in the Yucatan Peninsula of Mexico.

Treesearch

Kevyn E. Wightman; Sheila E. Ward; Jeremy P. Haggar; Bartolo Rodriguez Santiago; Jonathan P. Cornelius

2008-01-01

Stocks of the valuable big-leaf mahogany (Swietenia macrophylla King) are declining, and trials for growth and pest resistance are needed to select material for plantations. Seeds were collected from 67 open-pollinated trees from five provenances in the Yucatan Peninsula of Mexico and planted in three provenance/progeny trials in the state of Quintana Roo, Mexico, in...

Linked data and provenance in biological data webs.

PubMed

Zhao, Jun; Miles, Alistair; Klyne, Graham; Shotton, David

2009-03-01

The Web is now being used as a platform for publishing and linking life science data. The Web's linking architecture can be exploited to join heterogeneous data from multiple sources. However, as data are frequently being updated in a decentralized environment, provenance information becomes critical to providing reliable and trustworthy services to scientists. This article presents design patterns for representing and querying provenance information relating to mapping links between heterogeneous data from sources in the domain of functional genomics. We illustrate the use of named resource description framework (RDF) graphs at different levels of granularity to make provenance assertions about linked data, and demonstrate that these assertions are sufficient to support requirements including data currency, integrity, evidential support and historical queries.

Provenance in Data Interoperability for Multi-Sensor Intercomparison

NASA Technical Reports Server (NTRS)

Lynnes, Chris; Leptoukh, Greg; Berrick, Steve; Shen, Suhung; Prados, Ana; Fox, Peter; Yang, Wenli; Min, Min; Holloway, Dan; Enloe, Yonsook

2008-01-01

As our inventory of Earth science data sets grows, the ability to compare, merge and fuse multiple datasets grows in importance. This requires a deeper data interoperability than we have now. Efforts such as Open Geospatial Consortium and OPeNDAP (Open-source Project for a Network Data Access Protocol) have broken down format barriers to interoperability; the next challenge is the semantic aspects of the data. Consider the issues when satellite data are merged, cross-calibrated, validated, inter-compared and fused. We must match up data sets that are related, yet different in significant ways: the phenomenon being measured, measurement technique, location in space-time or quality of the measurements. If subtle distinctions between similar measurements are not clear to the user, results can be meaningless or lead to an incorrect interpretation of the data. Most of these distinctions trace to how the data came to be: sensors, processing and quality assessment. For example, monthly averages of satellite-based aerosol measurements often show significant discrepancies, which might be due to differences in spatio- temporal aggregation, sampling issues, sensor biases, algorithm differences or calibration issues. Provenance information must be captured in a semantic framework that allows data inter-use tools to incorporate it and aid in the intervention of comparison or merged products. Semantic web technology allows us to encode our knowledge of measurement characteristics, phenomena measured, space-time representation, and data quality attributes in a well-structured, machine-readable ontology and rulesets. An analysis tool can use this knowledge to show users the provenance-related distrintions between two variables, advising on options for further data processing and analysis. An additional problem for workflows distributed across heterogeneous systems is retrieval and transport of provenance. Provenance may be either embedded within the data payload, or transmitted from server to client in an out-of-band mechanism. The out of band mechanism is more flexible in the richness of provenance information that can be accomodated, but it relies on a persistent framework and can be difficult for legacy clients to use. We are prototyping the embedded model, incorporating provenance within metadata objects in the data payload. Thus, it always remains with the data. The downside is a limit to the size of provenance metadata that we can include, an issue that will eventually need resolution to encompass the richness of provenance information required for daata intercomparison and merging.

Biomechanical differences in the stem straightening process among Pinus pinaster provenances. A new approach for early selection of stem straightness.

PubMed

Sierra-de-Grado, Rosario; Pando, Valentín; Martínez-Zurimendi, Pablo; Peñalvo, Alejandro; Báscones, Esther; Moulia, Bruno

2008-06-01

Stem straightness is an important selection trait in Pinus pinaster Ait. breeding programs. Despite the stability of stem straightness rankings in provenance trials, the efficiency of breeding programs based on a quantitative index of stem straightness remains low. An alternative approach is to analyze biomechanical processes that underlie stem form. The rationale for this selection method is that genetic differences in the biomechanical processes that maintain stem straightness in young plants will continue to control stem form throughout the life of the tree. We analyzed the components contributing most to genetic differences among provenances in stem straightening processes by kinetic analysis and with a biomechanical model defining the interactions between the variables involved (Fournier's model). This framework was tested on three P. pinaster provenances differing in adult stem straightness and growth. One-year-old plants were tilted at 45 degrees, and individual stem positions and sizes were recorded weekly for 5 months. We measured the radial extension of reaction wood and the anatomical features of wood cells in serial stem cross sections. The integral effect of reaction wood on stem leaning was computed with Fournier's model. Responses driven by both primary and secondary growth were involved in the stem straightening process, but secondary-growth-driven responses accounted for most differences among provenances. Plants from the straight-stemmed provenance showed a greater capacity for stem straightening than plants from the sinuous provenances mainly because of (1) more efficient reaction wood (higher maturation strains) and (2) more pronounced secondary-growth-driven autotropic decurving. These two process-based traits are thus good candidates for early selection of stem straightness, but additional tests on a greater number of genotypes over a longer period are required.

Foliar nitrogen metabolism of adult Douglas-fir trees is affected by soil water availability and varies little among provenances.

PubMed

Du, Baoguo; Kreuzwieser, Jürgen; Dannenmann, Michael; Junker, Laura Verena; Kleiber, Anita; Hess, Moritz; Jansen, Kirstin; Eiblmeier, Monika; Gessler, Arthur; Kohnle, Ulrich; Ensminger, Ingo; Rennenberg, Heinz; Wildhagen, Henning

2018-01-01

The coniferous forest tree Douglas-fir (Pseudotsuga menziesii) is native to the pacific North America, and is increasingly planted in temperate regions worldwide. Nitrogen (N) metabolism is of great importance for growth, resistance and resilience of trees. In the present study, foliar N metabolism of adult trees of three coastal and one interior provenance of Douglas-fir grown at two common gardens in southwestern Germany (Wiesloch, W; Schluchsee, S) were characterized in two subsequent years. Both the native North American habitats of the seed sources and the common garden sites in Germany differ in climate conditions. Total and mineral soil N as well as soil water content were higher in S compared to W. We hypothesized that i) provenances differ constitutively in N pool sizes and composition, ii) N pools are affected by environmental conditions, and iii) that effects of environmental factors on N pools differ among interior and coastal provenances. Soil water content strongly affected the concentrations of total N, soluble protein, total amino acids (TAA), arginine and glutamate. Foliar concentrations of total N, soluble protein, structural N and TAA of trees grown at W were much higher than in trees at S. Provenance effects were small but significant for total N and soluble protein content (interior provenance showed lowest concentrations), as well as arginine, asparagine and glutamate. Our data suggest that needle N status of adult Douglas-fir is independent from soil N availability and that low soil water availability induces a re-allocation of N from structural N to metabolic N pools. Small provenance effects on N pools suggest that local adaptation of Douglas-fir is not dominated by N conditions at the native habitats.

Above-Ground Dimensions and Acclimation Explain Variation in Drought Mortality of Scots Pine Seedlings from Various Provenances

PubMed Central

Seidel, Hannes; Menzel, Annette

2016-01-01

Seedling establishment is a critical part of the life cycle, thus seedling survival might be even more important for forest persistence under recent and future climate change. Scots pine forests have been disproportionally more affected by climate change triggered forest-dieback. Nevertheless, some Scots pine provenances might prove resilient to future drought events because of the species’ large distributional range, genetic diversity, and adaptation potential. However, there is a lack of knowledge on provenance-specific survival under severe drought events and on how acclimation alters survival rates in Scots pine seedlings. We therefore conducted two drought-induced mortality experiments with potted Scots pine seedlings in a greenhouse. In the first experiment, 760 three-year-old seedlings from 12 different provenances of the south-western distribution range were subjected to the same treatment followed by the mortality experiment in 2014. In the second experiment, we addressed the question of whether acclimation to re-occurring drought stress events and to elevated temperature might decrease mortality rates. Thus, 139 four-year-old seedlings from France, Germany, and Poland were subjected to different temperature regimes (2012–2014) and drought treatments (2013–2014) before the mortality experiment in 2015. Provenances clearly differed in their hazard of drought-induced mortality, which was only partly related to the climate of their origin. Drought acclimation decreased the hazard of drought-induced mortality. Above-ground dry weight and height were the main determinants for the hazard of mortality, i.e., heavier and taller seedlings were more prone to mortality. Consequently, Scots pine seedlings exhibit a considerable provenance-specific acclimation potential against drought mortality and the selection of suitable provenances might thus facilitate seedling establishment and the persistence of Scots pine forest. PMID:27458477

Automated Generation of Technical Documentation and Provenance for Reproducible Research

NASA Astrophysics Data System (ADS)

Jolly, B.; Medyckyj-Scott, D.; Spiekermann, R.; Ausseil, A. G.

2017-12-01

Data provenance and detailed technical documentation are essential components of high-quality reproducible research, however are often only partially addressed during a research project. Recording and maintaining this information during the course of a project can be a difficult task to get right as it is a time consuming and often boring process for the researchers involved. As a result, provenance records and technical documentation provided alongside research results can be incomplete or may not be completely consistent with the actual processes followed. While providing access to the data and code used by the original researchers goes some way toward enabling reproducibility, this does not count as, or replace, data provenance. Additionally, this can be a poor substitute for good technical documentation and is often more difficult for a third-party to understand - particularly if they do not understand the programming language(s) used. We present and discuss a tool built from the ground up for the production of well-documented and reproducible spatial datasets that are created by applying a series of classification rules to a number of input layers. The internal model of the classification rules required by the tool to process the input data is exploited to also produce technical documentation and provenance records with minimal additional user input. Available provenance records that accompany input datasets are incorporated into those that describe the current process. As a result, each time a new iteration of the analysis is performed the documentation and provenance records are re-generated to provide an accurate description of the exact process followed. The generic nature of this tool, and the lessons learned during its creation, have wider application to other fields where the production of derivative datasets must be done in an open, defensible, and reproducible way.

Foliar nitrogen metabolism of adult Douglas-fir trees is affected by soil water availability and varies little among provenances

PubMed Central

Du, Baoguo; Kreuzwieser, Jürgen; Dannenmann, Michael; Junker, Laura Verena; Kleiber, Anita; Hess, Moritz; Jansen, Kirstin; Eiblmeier, Monika; Gessler, Arthur; Kohnle, Ulrich; Ensminger, Ingo; Rennenberg, Heinz

2018-01-01

The coniferous forest tree Douglas-fir (Pseudotsuga menziesii) is native to the pacific North America, and is increasingly planted in temperate regions worldwide. Nitrogen (N) metabolism is of great importance for growth, resistance and resilience of trees. In the present study, foliar N metabolism of adult trees of three coastal and one interior provenance of Douglas-fir grown at two common gardens in southwestern Germany (Wiesloch, W; Schluchsee, S) were characterized in two subsequent years. Both the native North American habitats of the seed sources and the common garden sites in Germany differ in climate conditions. Total and mineral soil N as well as soil water content were higher in S compared to W. We hypothesized that i) provenances differ constitutively in N pool sizes and composition, ii) N pools are affected by environmental conditions, and iii) that effects of environmental factors on N pools differ among interior and coastal provenances. Soil water content strongly affected the concentrations of total N, soluble protein, total amino acids (TAA), arginine and glutamate. Foliar concentrations of total N, soluble protein, structural N and TAA of trees grown at W were much higher than in trees at S. Provenance effects were small but significant for total N and soluble protein content (interior provenance showed lowest concentrations), as well as arginine, asparagine and glutamate. Our data suggest that needle N status of adult Douglas-fir is independent from soil N availability and that low soil water availability induces a re-allocation of N from structural N to metabolic N pools. Small provenance effects on N pools suggest that local adaptation of Douglas-fir is not dominated by N conditions at the native habitats. PMID:29566035

No difference in the competitive ability of introduced and native Trifolium provenances when grown with soil biota from their introduced and native ranges

PubMed Central

Shelby, Natasha; Hulme, Philip E.; van der Putten, Wim H.; McGinn, Kevin J.; Weser, Carolin; Duncan, Richard P.

2016-01-01

The evolution of increased competitive ability (EICA) hypothesis could explain why some introduced plant species perform better outside their native ranges. The EICA hypothesis proposes that introduced plants escape specialist pathogens or herbivores leading to selection for resources to be reallocated away from defence and towards greater competitive ability. We tested the hypothesis that escape from soil-borne enemies has led to increased competitive ability in three non-agricultural Trifolium (Fabaceae) species native to Europe that were introduced to New Zealand in the 19th century. Trifolium performance is intimately tied to rhizosphere biota. Thus, we grew plants from one introduced (New Zealand) and two native (Spain and the UK) provenances for each of three species in pots inoculated with soil microbiota collected from the rhizosphere beneath conspecifics in the introduced and native ranges. Plants were grown singly and in competition with conspecifics from a different provenance in order to compare competitive ability in the presence of different microbial communities. In contrast to the predictions of the EICA hypothesis, we found no difference in the competitive ability of introduced and native provenances when grown with soil microbiota from either the native or introduced range. Although plants from introduced provenances of two species grew more slowly than native provenances in native-range soils, as predicted by the EICA hypothesis, plants from the introduced provenance were no less competitive than native conspecifics. Overall, the growth rate of plants grown singly was a poor predictor of their competitive ability, highlighting the importance of directly quantifying plant performance in competitive scenarios, rather than relying on surrogate measures such as growth rate. PMID:26969431

An Ontology-Enabled Natural Language Processing Pipeline for Provenance Metadata Extraction from Biomedical Text (Short Paper).

PubMed

Valdez, Joshua; Rueschman, Michael; Kim, Matthew; Redline, Susan; Sahoo, Satya S

2016-10-01

Extraction of structured information from biomedical literature is a complex and challenging problem due to the complexity of biomedical domain and lack of appropriate natural language processing (NLP) techniques. High quality domain ontologies model both data and metadata information at a fine level of granularity, which can be effectively used to accurately extract structured information from biomedical text. Extraction of provenance metadata, which describes the history or source of information, from published articles is an important task to support scientific reproducibility. Reproducibility of results reported by previous research studies is a foundational component of scientific advancement. This is highlighted by the recent initiative by the US National Institutes of Health called "Principles of Rigor and Reproducibility". In this paper, we describe an effective approach to extract provenance metadata from published biomedical research literature using an ontology-enabled NLP platform as part of the Provenance for Clinical and Healthcare Research (ProvCaRe). The ProvCaRe-NLP tool extends the clinical Text Analysis and Knowledge Extraction System (cTAKES) platform using both provenance and biomedical domain ontologies. We demonstrate the effectiveness of ProvCaRe-NLP tool using a corpus of 20 peer-reviewed publications. The results of our evaluation demonstrate that the ProvCaRe-NLP tool has significantly higher recall in extracting provenance metadata as compared to existing NLP pipelines such as MetaMap.

Analysis of Antarctic glacigenic sediment provenance through geochemical and petrologic applications

NASA Astrophysics Data System (ADS)

Licht, Kathy J.; Hemming, Sidney R.

2017-05-01

The number of provenance studies of glacigenic sediments in Antarctica has increased dramatically over the past decade, providing an enhanced understanding of ice sheet history and dynamics, along with the broader geologic history. Such data have been used to assess glacial erosion patterns at the catchment scale, flow path reconstructions over a wide range of scales, and ice sheet fluctuations indicated by iceberg rafted debris in circumantarctic glacial marine sediments. It is notable that even though most of the bedrock of the continent is ice covered and inaccessible, provenance data can provide such valuable information about Antarctic ice and can even be used to infer buried rock types along with their geo- and thermochronologic history. Glacigenic sediments provide a broader array of provenance analysis opportunities than any other sediment type because of their wide range of grain sizes, and in this paper we review methods and examples from all size fractions that have been applied to the Antarctic glacigenic sedimentary record. Interpretations of these records must take careful consideration of the choice of analytical methods, uneven patterns of erosion, and spatial variability in sediment transport and rock types, which all may lead to a preferential identification of different elements of sources in the provenance analyses. Because of this, we advocate a multi-proxy approach and highlight studies that demonstrate the value of selecting complementary provenance methods.

Intraspecies variation in a widely distributed tree species regulates the responses of soil microbiome to different temperature regimes.

PubMed

Zhang, Cui-Jing; Delgado-Baquerizo, Manuel; Drake, John E; Reich, Peter B; Tjoelker, Mark G; Tissue, David T; Wang, Jun-Tao; He, Ji-Zheng; Singh, Brajesh K

2018-04-01

Plant characteristics in different provenances within a single species may vary in response to climate change, which might alter soil microbial communities and ecosystem functions. We conducted a glasshouse experiment and grew seedlings of three provenances (temperate, subtropical and tropical origins) of a tree species (i.e., Eucalyptus tereticornis) at different growth temperatures (18, 21.5, 25, 28.5, 32 and 35.5°C) for 54 days. At the end of the experiment, bacterial and fungal community composition, diversity and abundance were characterized. Measured soil functions included surrogates of microbial respiration, enzyme activities and nutrient cycling. Using Permutation multivariate analysis of variance (PerMANOVA) and network analysis, we found that the identity of tree provenances regulated both structure and function of soil microbiomes. In some cases, tree provenances substantially affected the response of microbial communities to the temperature treatments. For example, we found significant interactions of temperature and tree provenance on bacterial community and relative abundances of Chloroflexi and Zygomycota, and inorganic nitrogen. Microbial abundance was altered in response to increasing temperature, but was not affected by tree provenances. Our study provides novel evidence that even a small variation in biotic components (i.e., intraspecies tree variation) can significantly influence the response of soil microbial community composition and specific soil functions to global warming. © 2018 Society for Applied Microbiology and John Wiley & Sons Ltd.

Bridging the provenance gap: opportunities and challenges tracking in and ex silico provenance in sUAS workflows

NASA Astrophysics Data System (ADS)

Thomer, A.

2017-12-01

Data provenance - the record of the varied processes that went into the creation of a dataset, as well as the relationships between resulting data objects - is necessary to support the reusability, reproducibility and reliability of earth science data. In sUAS-based research, capturing provenance can be particularly challenging because of the breadth and distributed nature of the many platforms used to collect, process and analyze data. In any given project, multiple drones, controllers, computers, software systems, sensors, cameras, imaging processing algorithms and data processing workflows are used over sometimes long periods of time. These platforms and processing result in dozens - if not hundreds - of data products in varying stages of readiness-for-analysis and sharing. Provenance tracking mechanisms are needed to make the relationships between these many data products explicit, and therefore more reusable and shareable. In this talk, I discuss opportunities and challenges in tracking provenance in sUAS-based research, and identify gaps in current workflow-capture technologies. I draw on prior work conducted as part of the IMLS-funded Site-Based Data Curation project in which we developed methods of documenting in and ex silico (that is, computational and non-computation) workflows, and demonstrate this approaches applicability to research with sUASes. I conclude with a discussion of ontologies and other semantic technologies that have potential application in sUAS research.

Climate Data Provenance Tracking for Just-In-Time Computation

NASA Astrophysics Data System (ADS)

Fries, S.; Nadeau, D.; Doutriaux, C.; Williams, D. N.

2016-12-01

The "Climate Data Management System" (CDMS) was created in 1996 as part of the Climate Data Analysis Tools suite of software. It provides a simple interface into a wide variety of climate data formats, and creates NetCDF CF-Compliant files. It leverages the NumPy framework for high performance computation, and is an all-in-one IO and computation package. CDMS has been extended to track manipulations of data, and trace that data all the way to the original raw data. This extension tracks provenance about data, and enables just-in-time (JIT) computation. The provenance for each variable is packaged as part of the variable's metadata, and can be used to validate data processing and computations (by repeating the analysis on the original data). It also allows for an alternate solution for sharing analyzed data; if the bandwidth for a transfer is prohibitively expensive, the provenance serialization can be passed in a much more compact format and the analysis rerun on the input data. Data provenance tracking in CDMS enables far-reaching and impactful functionalities, permitting implementation of many analytical paradigms.

Standardization and program effect analysis (Study 2.4). Volume 2: Equipment commonality analysis. [cost savings of using flight-proven components in designing spacecraft

NASA Technical Reports Server (NTRS)

Shiokari, T.

1975-01-01

The feasibility and cost savings of using flight-proven components in designing spacecraft were investigated. The components analyzed were (1) large space telescope, (2) stratospheric aerosol and gas equipment, (3) mapping mission, (4) solar maximum mission, and (5) Tiros-N. It is concluded that flight-proven hardware can be used with not-too-extensive modification, and significant savings can be realized. The cost savings for each component are presented.

Signal or noise? Separating grain size-dependent Nd isotope variability from provenance shifts in Indus delta sediments, Pakistan

NASA Astrophysics Data System (ADS)

Jonell, T. N.; Li, Y.; Blusztajn, J.; Giosan, L.; Clift, P. D.

2017-12-01

Rare earth element (REE) radioisotope systems, such as neodymium (Nd), have been traditionally used as powerful tracers of source provenance, chemical weathering intensity, and sedimentary processes over geologic timescales. More recently, the effects of physical fractionation (hydraulic sorting) of sediments during transport have called into question the utility of Nd isotopes as a provenance tool. Is source terrane Nd provenance resolvable if sediment transport strongly induces noise? Can grain-size sorting effects be quantified? This study works to address such questions by utilizing grain size analysis, trace element geochemistry, and Nd isotope geochemistry of bulk and grain-size fractions (<63μm, 63-125 μm, 125-250 μm) from the Indus delta of Pakistan. Here we evaluate how grain size effects drive Nd isotope variability and further resolve the total uncertainties associated with Nd isotope compositions of bulk sediments. Results from the Indus delta indicate bulk sediment ɛNd compositions are most similar to the <63 µm fraction as a result of strong mineralogical control on bulk compositions by silt- to clay-sized monazite and/or allanite. Replicate analyses determine that the best reproducibility (± 0.15 ɛNd points) is observed in the 125-250 µm fraction. The bulk and finest fractions display the worst reproducibility (±0.3 ɛNd points). Standard deviations (2σ) indicate that bulk sediment uncertainties are no more than ±1.0 ɛNd points. This argues that excursions of ≥1.0 ɛNd points in any bulk Indus delta sediments must in part reflect an external shift in provenance irrespective of sample composition, grain size, and grain size distribution. Sample standard deviations (2s) estimate that any terrigenous bulk sediment composition should vary no greater than ±1.1 ɛNd points if provenance remains constant. Findings from this study indicate that although there are grain-size dependent Nd isotope effects, they are minimal in the Indus delta such that resolvable provenance-driven trends can be identified in bulk sediment ɛNd compositions over the last 20 k.y., and that overall provenance trends remain consistent with previous findings.

7 CFR 4279.2 - Definitions and abbreviations.

Code of Federal Regulations, 2010 CFR

2010-01-01

... projects utilizing technology that has a proven operating history, and for which there is an established... available energy projects that utilize technology that has a proven operating history, and for which there...

Proven Alternatives for Aboveground Treatment of Arsenic in Groundwater

EPA Pesticide Factsheets

This issue paper, developed for EPA's Engineering Forum, identifies and summarizes experiences with proven aboveground treatment alternatives for arsenic in groundwater, and provides information on their relative effectiveness and cost.

Structural Elements in a Persistent Identifier Infrastructure and Resulting Benefits for the Earth Science Community

NASA Astrophysics Data System (ADS)

Weigel, T.; Toussaiant, F.; Stockhause, M.; Höck, H.; Kindermann, S.; Lautenschlager, M.; Ludwig, T.

2012-12-01

We propose a wide adoption of structural elements (typed links, collections, trees) in the Handle System to improve identification and access of scientific data, metadata and software as well as traceability of data provenance. Typed links target the issue of data provenance as a means to assess the quality of scientific data. Data provenance is seen here as a directed acyclic graph with nodes representing data and vertices representing derivative operations (Moreau 2010). Landing pages can allow a human user to explore the provenance graph back to the primary unprocessed data, thereby also giving credit to the original data producer. As in Earth System Modeling no single infrastructure with complete data lifecycle coverage exists, we propose to split the problem domain in two parts. Project-specific infrastructures such as the German project C3-Grid or the Earth System Grid Federation (ESGF) for CMIP5 data are aware of data and data operations (Toussaint et al. 2012) and can thus detect and accumulate single nodes and vertices in the provenance graph, assigning Handles to data, metadata and software. With a common schema for typed links, the provenance graph is established as downstream infrastructures refer incoming Handles. Data in this context is for example hierarchically structured Earth System model output data, which receives DataCite DOIs only for the most coarse-granular elements. Using Handle tree structures, the lower levels of the hierarchy can also receive Handles, allowing authors to more precisely identify the data they used (Lawrence et al. 2011). We can e.g. define a DOI for just the 2m-temperature variable of CMIP5 data across many CMIP5 experiments or a DOI for model and observational data coming from different sources. The structural elements should be implemented through Handle values at the Handle infrastructure level for two reasons. Handle values are more durable than downstream websites or databases, and thus the provenance chain does not break if individual links become unavailable. Secondly, a single service cannot interpret links if downstream solutions differ in their implementation schemas. Emerging efforts driven by the European Persistent Identifier Consortium (EPIC) aim to establish a default mechanism for structural elements at the Handle level. We motivate to make applications, which take part in the data lifecycle, aware of data derivation provenance and let them provide additional elements to the provenance graph. Since they are also Handles, DataCite DOIs can act as a corner stone and provide an entry point to discover the provenance graph. References B. Lawrence, C. Jones, B. Matthews, S. Pepler, and S. Callaghan, "Citation and peer review of data: Moving towards formal data publication," Int. J. of Digital Curation, vol. 6, no. 2, 2011. L. Moreau, "The foundations for provenance on the web," Foundations and Trends® in Web Science, vol. 2, no. 2-3, pp. 99-241, 2010. F. Toussaint, T. Weigel, H. Thiemann, H. Höck, M. Stockhause: "Application Examples for Handle System Usage", submitted to AGU 2012 session IN009.

Using Domain Requirements to Achieve Science-Oriented Provenance

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stephan, Eric G; Halter, Todd D; Critchlow, Terence J

2010-06-18

Using Domain Requirements to Achieve Science-Oriented Provenance Eric Stephan1 Todd Halter1 Terence Critchlow1 Paulo Pinheiro da Silva2 Leonardo Salayandia2 1 Pacific Northwest National Laboratory, Richland WA, USA 2 University of Texas at El Paso, El Paso TX, USA Abstract. The US Department of Energy (DOE) Atmospheric Radi- ation Measurement Program (ARM) is adopting the use of formalized provenance to support observational data products produced by ARM operations and relied upon by researchers. Because of the diversity of needs in the climate community provenance will need to be conveyed in a domain-oriented context. This paper explores a use case where semanticmore » abstract workflows (SAW) are employed as a means to filter, aggregate, and contextually describe the historical events responsible for the ARM data product the scientist is relying upon.« less

Synchronisms between bud and cambium phenology in black spruce: early-flushing provenances exhibit early xylem formation.

PubMed

Perrin, Magali; Rossi, Sergio; Isabel, Nathalie

2017-05-01

Bud and cambial phenology represent the adaptation of species to the local environment that allows the growing season to be maximized while minimizing the risk of frost for the developing tissues. The temporal relationship between the apical and radial meristems can help in the understanding of tree growth as a whole process. The aim of this study was to compare cambial phenology in black spruce (Picea mariana (Mill.) B.S.P.) provenances classified as early and late bud flushing. The different phases of cambial phenology were assessed on wood microcores sampled weekly from April to October in 2014 and 2015 from 61 trees growing in a provenance trial in Quebec, Canada. Trees showing an early bud flush also exhibited early reactivation of xylem differentiation, although an average difference of 12 days for buds corresponded to small although significant differences of 4 days for xylem. Provenances with early bud flush had an early bud set and completed xylem formation earlier than late bud flush provenances. No significant difference in the period of xylem formation and total growth was observed between the flushing classes. Our results demonstrate that the ecotype differentiation of black spruce provenances represented by the phenological adaptation of buds to the local climate corresponds to specific growth dynamics of the xylem. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Nitrogen partitioning in oak leaves depends on species, provenance, climate conditions and soil type.

PubMed

Hu, B; Simon, J; Kuster, T M; Arend, M; Siegwolf, R; Rennenberg, H

2013-01-01

Climate-tolerant tree species and/or provenances have to be selected to ensure the high productivity of managed forests in Central Europe under the prognosticated climate changes. For this purpose, we studied the responses of saplings from three oak species (i.e. Quercus robur, Q. petraea and Q. pubescens) and provenances of different climatic origin (i.e. low or high rainfall, low or high temperature habitats) with regard to leaf nitrogen (N) composition as a measure of N nutrition. Saplings were grown in model ecosystems on either calcareous or acidic soil and subjected to one of four treatments (control, drought, air warming or a combination of drought and air warming). Across species, oak N metabolism responded to the influence of drought and/or air warming with an increase in leaf amino acid N concentration at the expense of structural N. Moreover, provenances or species from drier habitats were more tolerant to the climate conditions applied, as indicated by an increase in amino acid N (comparing species) or soluble protein N (comparing provenances within a species). Furthermore, amino acid N concentrations of oak leaves were significantly higher on calcareous compared to acidic soil. From these results, it can be concluded that seeds from provenances or species originating from drier habitats and - if available - from calcareous soil types may provide a superior seed source for future forest establishment. © 2012 German Botanical Society and The Royal Botanical Society of the Netherlands.

PIXE study on the provenance of Chinese ancient porcelain

NASA Astrophysics Data System (ADS)

Zhu, D.; Cheng, H. S.; Lin, J. W.; Yang, F. J.

2006-08-01

This paper reports the PIXE study on the provenance of Chinese ancient porcelain made in 7-10th century. The chemical compositions of Jun celadon samples made at Juntai, Linru and Hunyuan kilns, the white-glazed porcelain samples made at Ding, Huangye and Dangyangyu kilns, and the Ru celadon samples made at Qiangliang Temple were measured by external-beam PIXE, and the factor analysis was applied for identifying their provenances. Experimental results show that the porcelain products made at different kilns can be distinguished according to the compositional differences measured by PIXE.

Seamless Provenance Representation and Use in Collaborative Science Scenarios

NASA Astrophysics Data System (ADS)

Missier, P.; Ludaescher, B.; Bowers, S.; Altintas, I.; Anand, M. K.; Dey, S.; Sarkar, A.; Shrestha, B.; Goble, C.

2010-12-01

The notion of sharing scientific data has only recently begun to gain ground in science, where data is still considered a private asset. There is growing evidence, however, that the benefits of scientific collaboration through early data sharing during the course of a science project may outgrow the risk of losing exclusive ownership of the data. As exemplar success stories are making the headlines[1], principles of effective information sharing have become the subject of e-science research. In particular, any piece of published data should be self-describing, to the extent necessary for consumers to determine its suitability for reuse in their own projects. This is accomplished by associating a body of formally specified and machine-processable metadata to the data. When data is produced and reused by independent groups, however, metadata interoperability issues emerge. This is the case for provenance, a form of metadata that describes the history of a data product, Y. Provenance is typically expressed as a graph-structured set of dependencies that account for the sequence of computational or interactive steps that led to Y, often starting from some primary, observational data. Traversing dependency graphs is one of the mechanisms used to answer questions on data reliability. In the context of the NSF DataONE project[2], we have been studying issues of provenance interoperability in scientific collaboration scenarios. Consider a first scientist, Alice, who publishes a data product X along with its provenance, and a second scientist who further transforms X into a new product Y, also along with its provenance. A third scientist, who is interested in Y, expects to be able to trace Y's history up to the inputs used by Alice. This is only possible, however, if provenance accumulates into a single, uniform graph that can be seamlessly traversed. This becomes problematic when provenance is captured using different tools and computational models (i.e. workflow systems), as well as when data is published and reused using mechanisms that are not provenance-aware. In this presentation we discuss requirements for ensuring provenance-aware data publishing and reuse, and describe the design and implementation of a prototype toolkit that involves two specific, and broadly used, workflow models, Kepler [3] and Taverna [4]. The implementation is expected to be adopted as part of DataONE's investigators' toolkit, in support of its mission of large-scale data preservation. Refs. [1]Sharing of Data Leads to Progress on Alzheimer’s, G. Kolata, NYT, 8/12/2010 [2]http://www.dataone.org [3]Ludaescher B., Altintas I. et al. Scientific Workflow Management and the Kepler System. Special Issue: Workflow in Grid Systems. Concurrency and Computation: Practice & Experience 18(10): 1039-1065, 2006 [4]D. Hull, K. Wolstencroft, R. Stevens, C. Goble, M. R. Pocock, P. Li, T. Oinn. Taverna: a tool for building and running workflows of services. Nucl. Acids Res. 34: W729-W732, 2006

Use of genomic recursions and algorithm for proven and young animals for single-step genomic BLUP analyses--a simulation study.

PubMed

Fragomeni, B O; Lourenco, D A L; Tsuruta, S; Masuda, Y; Aguilar, I; Misztal, I

2015-10-01

The purpose of this study was to examine accuracy of genomic selection via single-step genomic BLUP (ssGBLUP) when the direct inverse of the genomic relationship matrix (G) is replaced by an approximation of G(-1) based on recursions for young genotyped animals conditioned on a subset of proven animals, termed algorithm for proven and young animals (APY). With the efficient implementation, this algorithm has a cubic cost with proven animals and linear with young animals. Ten duplicate data sets mimicking a dairy cattle population were simulated. In a first scenario, genomic information for 20k genotyped bulls, divided in 7k proven and 13k young bulls, was generated for each replicate. In a second scenario, 5k genotyped cows with phenotypes were included in the analysis as young animals. Accuracies (average for the 10 replicates) in regular EBV were 0.72 and 0.34 for proven and young animals, respectively. When genomic information was included, they increased to 0.75 and 0.50. No differences between genomic EBV (GEBV) obtained with the regular G(-1) and the approximated G(-1) via the recursive method were observed. In the second scenario, accuracies in GEBV (0.76, 0.51 and 0.59 for proven bulls, young males and young females, respectively) were also higher than those in EBV (0.72, 0.35 and 0.49). Again, no differences between GEBV with regular G(-1) and with recursions were observed. With the recursive algorithm, the number of iterations to achieve convergence was reduced from 227 to 206 in the first scenario and from 232 to 209 in the second scenario. Cows can be treated as young animals in APY without reducing the accuracy. The proposed algorithm can be implemented to reduce computing costs and to overcome current limitations on the number of genotyped animals in the ssGBLUP method. © 2015 Blackwell Verlag GmbH.

Provenance for Runtime Workflow Steering and Validation in Computational Seismology

NASA Astrophysics Data System (ADS)

Spinuso, A.; Krischer, L.; Krause, A.; Filgueira, R.; Magnoni, F.; Muraleedharan, V.; David, M.

2014-12-01

Provenance systems may be offered by modern workflow engines to collect metadata about the data transformations at runtime. If combined with effective visualisation and monitoring interfaces, these provenance recordings can speed up the validation process of an experiment, suggesting interactive or automated interventions with immediate effects on the lifecycle of a workflow run. For instance, in the field of computational seismology, if we consider research applications performing long lasting cross correlation analysis and high resolution simulations, the immediate notification of logical errors and the rapid access to intermediate results, can produce reactions which foster a more efficient progress of the research. These applications are often executed in secured and sophisticated HPC and HTC infrastructures, highlighting the need for a comprehensive framework that facilitates the extraction of fine grained provenance and the development of provenance aware components, leveraging the scalability characteristics of the adopted workflow engines, whose enactment can be mapped to different technologies (MPI, Storm clusters, etc). This work looks at the adoption of W3C-PROV concepts and data model within a user driven processing and validation framework for seismic data, supporting also computational and data management steering. Validation needs to balance automation with user intervention, considering the scientist as part of the archiving process. Therefore, the provenance data is enriched with community-specific metadata vocabularies and control messages, making an experiment reproducible and its description consistent with the community understandings. Moreover, it can contain user defined terms and annotations. The current implementation of the system is supported by the EU-Funded VERCE (http://verce.eu). It provides, as well as the provenance generation mechanisms, a prototypal browser-based user interface and a web API built on top of a NoSQL storage technology, experimenting ways to ensure a rapid and flexible access to the lineage traces. It supports the users with the visualisation of graphical products and offers combined operations to access and download the data which may be selectively stored at runtime, into dedicated data archives.

Petrogenesis of the NE Gondwanan uppermost Ediacaran-Lower Cretaceous siliciclastic sequence of Jordan: Provenance, tectonic, and climatic implications

NASA Astrophysics Data System (ADS)

Amireh, Belal S.

2018-04-01

Detrital framework modes of the NE Gondwanan uppermost Ediacaran-Lower Cretaceous siliciclastic sequence of Jordan are determined employing the routine polarized light microscope. The lower part of this sequence constitutes a segment of the vast lower Paleozoic siliciclastic sheet flanking the northern Gondwana margin that was deposited over a regional unconformity truncating the outskirts of the East African orogen in the aftermath of the Neoproterozoic amalgamation of Gondwana. The research aims to evaluate the factors governing the detrital light mineral composition of this sandstone. The provenance terranes of the Arabian craton controlled by plate tectonics appear to be the primary factor in most of the formations, which could be either directly inferred employing Dickinson's compositional triangles or implied utilizing the petrographic data achieved and the available tectonic and geological data. The Arabian-Nubian Shield constitutes invariably the craton interior or the transitional provenance terrane within the NE Gondwana continental block that consistently supplied sandy detritus through northward-flowing braided rivers to all the lower Paleozoic formations. On the other hand, the Lower Cretaceous Series received siliciclastic debris, through braided-meandering rivers having same northward dispersal direction, additionally from the lower Paleozoic and lower-middle Mesozoic platform strata in the Arabian Craton. The formations making about 50% of the siliciclastic sequence represent a success for Dickinson's plate tectonics-provenance approach in attributing the detrital framework components primarily to the plate tectonic setting of the provenance terranes. However, even under this success, the varying effects of the other secondary sedimentological and paleoclimatological factors are important and could be crucial. The inapplicability of this approach to infer the appropriate provenance terranes of the remaining formations could be ascribed either to the special influence of local intracratonic syn-rift rhyolitic extrusions, where their plate tectonic setting is not represented by the standard plate tectonics-provenance diagrams, or to the rather unusual effect of the Late Ordovician glacial event.

Degenerative disease of the lumbar spine.

PubMed

Kovacs, F M; Arana, E

2016-04-01

In the last 25 years, scientific research has brought about drastic changes in the concept of low back pain and its management. Most imaging findings, including degenerative changes, reflect anatomic peculiarities or the normal aging process and turn out to be clinically irrelevant; imaging tests have proven useful only when systemic disease is suspected or when surgery is indicated for persistent spinal cord or nerve root compression. The radiologic report should indicate the key points of nerve compression, bypassing inconsequential findings. Many treatments have proven inefficacious, and some have proven counterproductive, but they continue to be prescribed because patients want them and there are financial incentives for doing them. Following the guidelines that have proven effective for clinical management improves clinical outcomes, reduces iatrogenic complications, and decreases unjustified and wasteful healthcare expenditures. Copyright © 2016 SERAM. Published by Elsevier España, S.L.U. All rights reserved.

Representing annotation compositionality and provenance for the Semantic Web

PubMed Central

2013-01-01

Background Though the annotation of digital artifacts with metadata has a long history, the bulk of that work focuses on the association of single terms or concepts to single targets. As annotation efforts expand to capture more complex information, annotations will need to be able to refer to knowledge structures formally defined in terms of more atomic knowledge structures. Existing provenance efforts in the Semantic Web domain primarily focus on tracking provenance at the level of whole triples and do not provide enough detail to track how individual triple elements of annotations were derived from triple elements of other annotations. Results We present a task- and domain-independent ontological model for capturing annotations and their linkage to their denoted knowledge representations, which can be singular concepts or more complex sets of assertions. We have implemented this model as an extension of the Information Artifact Ontology in OWL and made it freely available, and we show how it can be integrated with several prominent annotation and provenance models. We present several application areas for the model, ranging from linguistic annotation of text to the annotation of disease-associations in genome sequences. Conclusions With this model, progressively more complex annotations can be composed from other annotations, and the provenance of compositional annotations can be represented at the annotation level or at the level of individual elements of the RDF triples composing the annotations. This in turn allows for progressively richer annotations to be constructed from previous annotation efforts, the precise provenance recording of which facilitates evidence-based inference and error tracking. PMID:24268021

Using Detrital Zircon Geochronology to Constrain Paleogene Provenance and Its Relationship to Rifting in the Zhu 1 Depression, Pearl River Mouth Basin, South China Sea

NASA Astrophysics Data System (ADS)

Wang, Wei; Ye, Jiaren; Bidgoli, Tandis; Yang, Xianghua; Shi, Hesheng; Shu, Yu

2017-11-01

Paleogene syn-rift successions in the South China Sea are poorly understood and systematic provenance analysis, which could provide clues to their history, is lacking. Here we report 409 new concordant U-Pb ages from detrital zircons separated from the Paleogene Wenchang, Enping, and Zhuhai formations in the Zhu 1 depression, Pearl River Mouth Basin. The new data, combined with the published age data from the region, document changes in the provenance of syn-rift successions. Detrital zircons from the Eocene Wenchang Formation are unimodal, with Jurassic-Cretaceous (180-80 Ma) ages making up >80% of grains. The ages are consistent with the geochronology of intrabasinal highs, dominated by igneous rocks emplaced during the Yanshanian orogeny, and suggest local provenance. By contrast, detrital zircons from the upper Eocene to lower Oligocene Enping Formation form three well-recognized age-clusters, with peaks at 150, 254, and 438 Ma that match documented tectonomagmatism in South China Block (SCB). Combined with increasing numbers of Precambrian zircons, the data suggest increasing influence of regional provenance of the SCB. Similar age peaks are also recognized from the limited number of zircons analyzed from the upper Oligocene Zhuhai Formation and comparability with modern shelf and river sediment indicates the unit was mainly sourced from the SCB and likely transported by a paleo-Pearl River. We infer that the change in provenance, from local uplifts within the Zhu 1 to the SCB, is related to distinct phases of PRMB rift development; however, later changes are best explained by SCB drainage evolution.

Sediment provenance in contractional orogens: The detrital zircon record from modern rivers in the Andean fold-thrust belt and foreland basin of western Argentina

NASA Astrophysics Data System (ADS)

Capaldi, Tomas N.; Horton, Brian K.; McKenzie, N. Ryan; Stockli, Daniel F.; Odlum, Margaret L.

2017-12-01

This study analyzes detrital zircon U-Pb age populations from Andean rivers to assess whether active synorogenic sedimentation accurately records proportional contributions from varied bedrock source units across different drainage areas. Samples of modern river sand were collected from west-central Argentina (28-33°S), where the Andes are characterized by active uplift and deposition in diverse contractional provinces, including (1) hinterland, (2) wedge-top, (3) proximal foreland, and (4) distal broken foreland basin settings. Potential controls on sediment provenance were evaluated by comparing river U-Pb age distributions with predicted age spectra generated by a sediment mixing model weighted by relative catchment exposure (outcrop) areas for different source units. Several statistical measures (similarity, likeness, and cross-correlation) are employed to compare how well the area-weighted model predicts modern river age populations. (1) Hinterland basin provenance is influenced by local relief generated along thrust-bounded ranges and high zircon fertility of exposed crystalline basement. (2) Wedge-top (piggyback) basin provenance is controlled by variable lithologic durability among thrust-belt bedrock sources and recycled basin sediments. (3) Proximal foreland (foredeep) basin provenance of rivers and fluvial megafans accurately reflect regional bedrock distributions, with limited effects of zircon fertility and lithologic durability in large (>20,000 km2) second-order drainage systems. (4) In distal broken segments of the foreland basin, regional provenance signatures from thrust-belt and hinterland areas are diluted by local contributions from foreland basement-cored uplifts.

A rare presentation of histologically proven sarcoidosis of the knee: A case report and brief review of the literature.

PubMed

Deschuyteneer, Evan; Rongé, R; Riffi, A; De Pierre, K; Vandenbroucke, F; Boulet, C; Goossens, A; Vincken, W

2017-06-01

We here report a patient with histologically proven sarcoidosis of the knee, a rare localization of sarcoidosis, which usually presents itself as a pulmonary disease. Case reports of radiological images that suggest osseous sarcoidosis of the appendicular skeleton are not so rare, however few are histologically proven. Since in our patient MRI could not distinguish between sarcoidosis and another (possibly malignant) disease, histological proof was obtained through a CT-guided biopsy. Imaging and treatment guidelines for extrapulmonary sarcoidosis are inexistent, due to lack of randomized trials.

Geochemical Identification in Sediment Provenance during Glacial/Interglacial Period: the Southern Drake Passage

NASA Astrophysics Data System (ADS)

Park, Y. K.; Jung, J.; Lee, J. I.; Yoo, K. C.; Kim, J. W.

2016-12-01

Clay mineralogy and crystal size distribution in marine sediment is used for the indication of a sediment provenance and climatic changes. Objective of this study is to trace the sediment provenances in the Southern Drake Passage with clay mineralogy, elemental composition and crystal size distributions (CSDs) of clay mineral. In the present study, X-Ray Diffractometer (XRD) measurements showed that smectite, illite and chlorite are dominant phases. The semi-quantitative analysis showed that the relatively proportion of smectite is 50 - 60% in interglacial stage, 30 - 39% in glacial stage. Comparing with REE data, sediments supply was influenced by Weddell sea current and Antarctic Circumpolar Current (ACC). Moreover, elemental composition and microscopic analysis of smectites were carried by Transmission Electron Microscopy (TEM) and energy dispersive spectroscopy (EDS). The composition of smectite clay minerals were plotted on the tertiary diagram indicating that Smectite in Drake Passage was transported from three provenances: South Shetland island, east and west side of Antarctic peninsula during glacial - interglacial period. The CSDs of smectite also indicate the various source of smectite. The variation in the values of α (mean thickness) and β2 (shape or uniformity of the distribution) of smectite grain size will be discussed in terms of the sediment provenance.

Assessing the role of detrital zircon sorting on provenance interpretations in an ancient fluvial system using paleohydraulics - Permian Cutler Group, Paradox Basin, Utah and Colorado

NASA Astrophysics Data System (ADS)

Findlay, C. P., III; Ewing, R. C.; Perez, N. D.

2017-12-01

Detrital zircon age signatures used in provenance studies are assumed to be representative of entire catchments from which the sediment was derived, but the extent to which hydraulic sorting can bias provenance interpretations is poorly constrained. Sediment and mineral sorting occurs with changes in hydraulic conditions driven by both allogenic and autogenic processes. Zircon is sorted from less dense minerals due to the difference in density, and any age dependence on zircon size could potentially bias provenance interpretations. In this study, a coupled paleohydraulic and geochemical provenance approach is used to identify changes in paleohydraulic conditions and relate them to spatial variations in provenance signatures from samples collected along an approximately time-correlative source-to-sink pathway in the Permian Cutler Group of the Paradox Basin. Samples proximal to the uplift have a paleoflow direction to the southwest. In the medial basin, paleocurrent direction indicates salt movement caused fluvial pathways divert to the north and northwest on the flanks of anticlines. Channel depth, flow velocity, and discharge calculations were derived from field measurements of grain size and dune and bar cross-stratification indicate that competency of the fluvial system decreased from proximal to the medial basin by up to a factor of 12. Based upon the paleohydraulic calculations, zircon size fractionation would occur along the transect such that the larger zircons are removed from the system prior to reaching the medial basin. Analysis of the size and age distribution of zircons from the proximal and distal fluvial system of the Cutler Group tests if this hydraulic sorting affects the expected Uncompahgre Uplift age distribution.

What Are We Tracking ... and Why?

NASA Astrophysics Data System (ADS)

Suarez-Sola, I.; Davey, A.; Hourcle, J. A.

2008-12-01

What Are We Tracking ... and Why? It is impossible to define what adequate provenance is without knowing who is asking the question. What determines sufficient provenance information is not a function of the data, but of the question being asked of it. Many of these questions are asked by people not affiliated with the mission and possibly from different disciplines. To plan for every conceivable question would require a significant burden on the data systems that are designed to answer the mission's science objectives. Provenance is further complicated as each system might have a different definition of 'data set'. Is it the raw instrument results? Is it the result of numerical processing? Does it include the associated metadata? Does it include packaging? Depending on how a system defines 'data set', it may not be able to track provenance with sufficient granularity to ask the desired question, or we may end up with a complex web of relationships that significantly increases the system complexity. System designers must also remember that data archives are not a closed system. We need mechanisms for tracking not only the provenance relationships between data objects and the systems that generate them, but also from journal articles back to the data that was used to support the research. Simply creating a mirror of the data used, as done in other scientific disciplines, is unrealistic for terabyte and petabyte scale data sets. We present work by the Virtual Solar Observatory on the assignment of identifiers that could be used for tracking provenance and compare it to other proposed standards in the scientific and library science communities. We use the Solar Dynamics Observatory, STEREO and Hinode missions as examples where the concept of 'data set' breaks many systems for citing data.

A common thermal niche among geographically diverse populations of the widely distributed tree species Eucalyptus tereticornis: No evidence for adaptation to climate-of-origin.

PubMed

Drake, John E; Vårhammar, Angelica; Kumarathunge, Dushan; Medlyn, Belinda E; Pfautsch, Sebastian; Reich, Peter B; Tissue, David T; Ghannoum, Oula; Tjoelker, Mark G

2017-12-01

Impacts of climate warming depend on the degree to which plants are constrained by adaptation to their climate-of-origin or exhibit broad climatic suitability. We grew cool-origin, central and warm-origin provenances of Eucalyptus tereticornis in an array of common temperature environments from 18 to 35.5°C to determine if this widely distributed tree species consists of geographically contrasting provenances with differentiated and narrow thermal niches, or if provenances share a common thermal niche. The temperature responses of photosynthesis, respiration, and growth were equivalent across the three provenances, reflecting a common thermal niche despite a 2,200 km geographic distance and 13°C difference in mean annual temperature at seed origin. The temperature dependence of growth was primarily mediated by changes in leaf area per unit plant mass, photosynthesis, and whole-plant respiration. Thermal acclimation of leaf, stem, and root respiration moderated the increase in respiration with temperature, but acclimation was constrained at high temperatures. We conclude that this species consists of provenances that are not differentiated in their thermal responses, thus rejecting our hypothesis of adaptation to climate-of-origin and suggesting a shared thermal niche. In addition, growth declines with warming above the temperature optima were driven by reductions in whole-plant leaf area and increased respiratory carbon losses. The impacts of climate warming will nonetheless vary across the geographic range of this and other such species, depending primarily on each provenance's climate position on the temperature response curves for photosynthesis, respiration, and growth. © 2017 John Wiley & Sons Ltd.

Usefulness of Sofia Pneumococcal FIA® test in comparison with BinaxNOW® Pneumococcal test in urine samples for the diagnosis of pneumococcal pneumonia.

PubMed

Burgos, Joaquin; Garcia-Pérez, Jorge N; di Lauro, Sabina González; Falcó, Vicenç; Pumarola, Tomás; Almirante, Benito; Teresa Martín Gomez, M

2018-04-13

The Sofia Pneumococcal FIA® test is a recently introduced immunofluorescent assay automatically read aimed to detect Streptococcus pneumoniae antigen in urine. The aim of this study was to evaluate the usefulness of SofiaFIA® urinary antigen test (UAT) in comparison with classical immunochromatographic BinaxNOW® test for the diagnosis of pneumococcal pneumonia (PP). Observational study was conducted in the Hospital Universitari Vall d'Hebron from December 2015 to August 2016. Consecutive adult patients diagnosed of pneumonia and admitted to the emergency department in whom UAT was requested were prospectively enrolled. Paired pneumococcal UAT was performed (BinaxNOW® and SofiaFIA®) in urine samples. To assess the performance of both tests, patients were categorized into proven PP (isolation of S. pneumoniae in sterile fluid) or probable PP (isolation of S. pneumoniae in respiratory secretion). Sensitivity, specificity, and concordance were calculated. A total of 219 patients with pneumonia were enrolled, of whom 14% had a proven or probable PP, 22% a non-pneumococcal etiology, and 64% an unidentified pathogen. Concordance between tests was good (κ = 0.81). Sensitivity of SofiaFIA® and BinaxNOW® UAT was 78.6 and 50% for proven PP (p = 0.124), and 74.2 and 58% for proven/probable PP (p = 0.063). Specificity for both tests was 83.3 and 85.5% for proven and proven/probable PP. In patients without an identified pathogen, SofiaFIA® test was positive in 33 (23.6%) cases and BinaxNOW® in 25 (17.8%), so Sofia Pneumococcal FIA® detected 32.6% more cases than BinaxNOW® (p = 0.001). Sofia Pneumococcal FIA® test showed an improved sensitivity over visual reading of BinaxNOW® test without a noticeable loss of specificity.

Change in Sediment Provenance Near the Current Estuary of Yellow River Since the Holocene Transgression

NASA Astrophysics Data System (ADS)

Song, Sheng; Feng, Xiuli; Li, Guogang; Liu, Xiao; Xiao, Xiao; Feng, Li

2018-06-01

Sedimentary sequence and sediment provenance are important factors when it comes to the studies on marine sedimentation. This paper studies grain size distribution, lithological characteristics, major and rare earth elemental compositions, micropaleontological features and 14C ages in order to examine sedimentary sequence and sediment provenance of the core BH6 drilled at the mouth of the Yellow River in Bohai Sea. According to the grain size and the micropaleontological compositions, 4 sedimentary units have been identified. Unit 1 (0-8.08 mbsf) is of the delta sedimentary facies, Unit 2 (8.08-12.08 mbsf) is of the neritic shelf facies, Unit 3 (12.08-23.85 mbsf) is of near-estuary beach-tidal facies, and Unit 4 (23.85 mbsf-) is of the continental lake facies. The deposits from Unit 1 to Unit 3 have been found to be marine strata formed after the Holocene transgression at about 10 ka BP, while Unit 4 is continental lacustrine deposit formed before 10 ka BP. The provenances of core BH6 sediments show properties of the continental crust and vary in different sedimentary periods. For Unit 4 sediments, the source regions are dispersed while the main provenance is not clear, although the parent rock characteristics of a few samples are similar to the Luanhe River sediments. For Unit 3, sediments at 21.1-23.85 mbsf have been mainly transported from the Liaohe River, while sediments above 21.1 mbsf are mainly from the Yellow River and partially from the Liaohe River. For Unit 2, the sediments have been mainly transported from the Yellow River, with a small amount from other rivers. For Unit 1, the provenance is mainly the Yellow River catchment. These results help in better understanding the evolution of the Yellow River Delta.

Localizing chronic Q fever: a challenging query

PubMed Central

2013-01-01

Background Chronic Q fever usually presents as endocarditis or endovascular infection. We investigated whether 18F-FDG PET/CT and echocardiography were able to detect the localization of infection. Also, the utility of the modified Duke criteria was assessed. Methods Fifty-two patients, who had an IgG titre of ≥ 1024 against C. burnetii phase I ≥ 3 months after primary infection or a positive PCR ≥ 1 month after primary infection, were retrospectively included. Data on serology, the results of all imaging studies, possible risk factors for developing proven chronic Q fever and clinical outcome were recorded. Results According to the Dutch consensus on Q fever diagnostics, 18 patients had proven chronic Q fever, 14 probable chronic Q fever, and 20 possible chronic Q fever. Of the patients with proven chronic Q fever, 22% were diagnosed with endocarditis, 17% with an infected vascular prosthesis, and 39% with a mycotic aneurysm. 56% of patients with proven chronic Q fever did not recall an episode of acute Q fever. Ten out of 13 18F-FDG PET/CT-scans in patients with proven chronic Q fever localized the infection. TTE and TEE were helpful in only 6% and 50% of patients, respectively. Conclusions If chronic Q fever is diagnosed, 18F-FDG PET/CT is a helpful imaging technique for localization of vascular infections due to chronic Q fever. Patients with proven chronic Q fever were diagnosed significantly more often with mycotic aneurysms than in previous case series. Definite endocarditis due to chronic Q fever was less frequently diagnosed in the current study. Chronic Q fever often occurs in patients without a known episode of acute Q fever, so clinical suspicion should remain high, especially in endemic regions. PMID:24004470

28 CFR 552.24 - Use of four-point restraints.

Code of Federal Regulations, 2011 CFR

2011-07-01

... Section 552.24 Judicial Administration BUREAU OF PRISONS, DEPARTMENT OF JUSTICE INSTITUTIONAL MANAGEMENT... be used to restrain an inmate, unless: (1) Such restraints previously have proven ineffective with respect to that inmate, or (2) Such restraints are proven ineffective during the initial application...

28 CFR 552.24 - Use of four-point restraints.

Code of Federal Regulations, 2010 CFR

2010-07-01

... Section 552.24 Judicial Administration BUREAU OF PRISONS, DEPARTMENT OF JUSTICE INSTITUTIONAL MANAGEMENT... be used to restrain an inmate, unless: (1) Such restraints previously have proven ineffective with respect to that inmate, or (2) Such restraints are proven ineffective during the initial application...

Applying successfully proven measures in roadway safety to reduce harmful collisions in SC.

DOT National Transportation Integrated Search

2017-06-06

The overall goal of this research was to identify proven successful safety programs used in other states and assess the potential for safety improvement if similar programs were implemented in South Carolina. The research team not only sought out eng...

40 CFR 63.90 - Program overview.

Code of Federal Regulations, 2012 CFR

2012-07-01

... calibration gases or test cells; (4) Use of an analytical technology that differs from that specified by a... “proven technology” (generally accepted by the scientific community as equivalent or better) that is... enforceable test method involving “proven technology” (generally accepted by the scientific community as...

40 CFR 63.90 - Program overview.

Code of Federal Regulations, 2013 CFR

2013-07-01

... calibration gases or test cells; (4) Use of an analytical technology that differs from that specified by a... “proven technology” (generally accepted by the scientific community as equivalent or better) that is... enforceable test method involving “proven technology” (generally accepted by the scientific community as...

40 CFR 63.90 - Program overview.

Code of Federal Regulations, 2014 CFR

2014-07-01

... calibration gases or test cells; (4) Use of an analytical technology that differs from that specified by a... “proven technology” (generally accepted by the scientific community as equivalent or better) that is... enforceable test method involving “proven technology” (generally accepted by the scientific community as...

How to Get Information on Several Proven Programs for Accelerating the Progress of Low-Achieving Children (Literacy for All Children).

ERIC Educational Resources Information Center

Allington, Richard L.

1992-01-01

Offers summaries of three proven programs (Reading Recovery, Success for All, and Accelerated Schools) for accelerating the reading and writing progress of low-achieving, low-income children. Provides addresses for more information. (SR)

Providing Global Change Information for Decision-Making: Capturing and Presenting Provenance

NASA Technical Reports Server (NTRS)

Ma, Xiaogang; Fox, Peter; Tilmes, Curt; Jacobs, Katherine; Waple, Anne

2014-01-01

Global change information demands access to data sources and well-documented provenance to provide evidence needed to build confidence in scientific conclusions and, in specific applications, to ensure the information's suitability for use in decision-making. A new generation of Web technology, the Semantic Web, provides tools for that purpose. The topic of global change covers changes in the global environment (including alterations in climate, land productivity, oceans or other water resources, atmospheric composition and or chemistry, and ecological systems) that may alter the capacity of the Earth to sustain life and support human systems. Data and findings associated with global change research are of great public, government, and academic concern and are used in policy and decision-making, which makes the provenance of global change information especially important. In addition, since different types of decisions benefit from different types of information, understanding how to capture and present the provenance of global change information is becoming more of an imperative in adaptive planning.

Provenance of aeolian sands in the Hetao Plain, northwestern China

NASA Astrophysics Data System (ADS)

Yang, Xingchen; Cai, Maotang; Ye, Peisheng; Ye, Mengni; Li, Chenglu; Wu, Hang; Lu, Jing; Wang, Tao; Zhao, Zhirong; Luzhou, Yangfan; Liu, Chao

2018-06-01

Patches of aeolian sand are distributed throughout the Hetao Plain, which pose threats to farming and agriculture. Identification of the provenance of the aeolian sands may help with efforts to alleviate ecological stress in Inner Mongolia and in the paleoenvironmental interpretation of sandy sequences. This study uses geochemical data to determine the provenance of aeolian sands from the Hetao Plain. Provenance discrimination diagrams revealed that the aeolian sands were mainly derived from mixed source felsic granites and granodiorites, which have undergone weak sedimentary recycling. The chemical index of alteration and A-CN-K data indicated that the aeolian sediments were transported over a short distance. Comparison of trace element and rare earth element (REE) ratios of the aeolian sands with rock samples from potential source areas has revealed that aeolian sand deposits in the Hetao Plain were mainly derived from Sertengshan and Yellow River sediments. The Langshan and Ordos Plateau may represent additional sand sources for the Hetao Plain.

Repeated Summer Drought and Re-watering during the First Growing Year of Oak (Quercus petraea) Delay Autumn Senescence and Bud Burst in the Following Spring

PubMed Central

Vander Mijnsbrugge, Kristine; Turcsán, Arion; Maes, Jorne; Duchêne, Nils; Meeus, Steven; Steppe, Kathy; Steenackers, Marijke

2016-01-01

Climate change predicts harsher summer droughts for mid-latitudes in Europe. To enhance our understanding of the putative impacts on forest regeneration, we studied the response of oak seedlings (Quercus petraea) to water deficit. Potted seedlings originating from three locally sourced provenances were subjected to two successive drought periods during the first growing season each followed by a plentiful re-watering. Here, we describe survival and phenological responses after the second drought treatment, applying general linear mixed modeling. From the 441 drought treated seedlings 189 subsisted with higher chances of survival among smaller plants and among single plants per pot compared to doubles. Remarkably, survival was independent of the provenance, although relatively more plants had died off in two provenances compared to the third one with mean plant height being higher in one provenance and standard deviation of plant height being higher in the other. Timing of leaf senescence was clearly delayed after the severe drought treatment followed by re-watering, with two seedlings per pot showing a lesser retardation compared to single plants. This delay can be interpreted as a compensation time in which plants recover before entering the subsequent developmental process of leaf senescence, although it renders seedlings more vulnerable to early autumn frosts because of the delayed hardening of the shoots. Onset of bud flush in the subsequent spring still showed a significant but small delay in the drought treated group, independent of the number of seedlings per pot, and can be considered as an after effect of the delayed senescence. In both phenological models significant differences among the three provenances were detected independent from the treatment. The only provenance that is believed to be local of origin, displayed the earliest leaf senescence and the latest flushing, suggesting an adaptation to the local maritime climate. This provenance also displayed the highest standard deviation of plant height, which can be interpreted as an adaptation to variable and unpredictable weather conditions, favoring smaller plants in drought-prone summers and higher plants in more normal growing seasons. PMID:27064667

Inter- and intra-specific variation in drought sensitivity in Abies spec. and its relation to wood density and growth traits

PubMed Central

George, Jan-Peter; Schueler, Silvio; Karanitsch-Ackerl, Sandra; Mayer, Konrad; Klumpp, Raphael T.; Grabner, Michael

2016-01-01

Understanding drought sensitivity of tree species and its intra-specific variation is required to estimate the effects of climate change on forest productivity, carbon sequestration and tree mortality as well as to develop adaptive forest management measures. Here, we studied the variation of drought reaction of six European Abies species and ten provenances of Abies alba planted in the drought prone eastern Austria. Tree-ring and X-ray densitometry data were used to generate early- and latewood measures for ring width and wood density. Moreover, the drought reaction of species and provenances within six distinct drought events between 1970 and 2011, as identified by the standardized precipitation index, was determined by four drought response measures. The mean reaction of species and provenances to drought events was strongly affected by the seasonal occurrence of the drought: a short, strong drought at the beginning of the growing season resulted in growth reductions up to 50%, while droughts at the end of the growing season did not affect annual increment. Wood properties and drought response measures showed significant variation among Abies species as well as among A. alba provenances. Whereas A. alba provenances explained significant parts in the variation of ring width measures, the Abies species explained significant parts in the variation of wood density parameters. A consistent pattern in drought response across the six drought events was observed only at the inter-specific level, where A. nordmanniana showed the highest resistance and A. cephalonica showed the best recovery after drought. In contrast, differences in drought reaction among provenances were only found for the milder drought events in 1986, 1990, 1993 and 2000 and the ranking of provenances varied at each drought event. This indicates that genetic variation in drought response within A. alba is more limited than among Abies species. Low correlations between wood density parameters and drought response measures suggest that wood density is a poor predictor of drought sensitivity in Abies spec. PMID:27713591

Identification of provenance rocks based on EPMA analyses of heavy minerals

NASA Astrophysics Data System (ADS)

Shimizu, M.; Sano, N.; Ueki, T.; Yonaga, Y.; Yasue, K. I.; Masakazu, N.

2017-12-01

Information on mountain building is significant in the field of geological disposal of high-level radioactive waste, because this affects long-term stability in groundwater flow system. Provenance analysis is one of effective approaches for understanding building process of mountains. Chemical compositions of heavy minerals, as well as their chronological data, can be an index for identification of provenance rocks. The accurate identification requires the measurement of as many grains as possible. In order to achieve an efficient provenance analysis, we developed a method for quick identification of heavy minerals using an Electron Probe Micro Analyzer (EPMA). In this method, heavy mineral grains extracted from a sample were aligned on a glass slide and mounted in a resin. Concentration of 28 elements was measured for 300-500 grains per sample using EPMA. To measure as many grains as possible, we prioritized swiftness of measurement over precision, configuring measurement time of about 3.5 minutes for each grain. Identification of heavy minerals was based on their chemical composition. We developed a Microsoft® Excel® spread sheet input criteria of mineral identification using a typical range of chemical compositions for each mineral. The grains of <80 wt.% or >110 wt.% total were rejected. The criteria of mineral identification were revised through the comparison between mineral identification by optical microscopy and chemical compositions of grains classified as "unknown minerals". Provenance rocks can be identified based on abundance ratio of identified minerals. If no significant difference of the abundance ratio was found among source rocks, chemical composition of specific minerals was used as another index. This method was applied to the sediments of some regions in Japan where provenance rocks had lithological variations but similar formation ages. Consequently, the provenance rocks were identified based on chemical compositions of heavy minerals resistant to weathering, such as zircon and ilmenite.This study was carried out under a contract with Ministry of Economy, Trade and Industry of Japan as part of its R&D supporting program for developing geological disposal technology.

PAV ontology: provenance, authoring and versioning.

PubMed

Ciccarese, Paolo; Soiland-Reyes, Stian; Belhajjame, Khalid; Gray, Alasdair Jg; Goble, Carole; Clark, Tim

2013-11-22

Provenance is a critical ingredient for establishing trust of published scientific content. This is true whether we are considering a data set, a computational workflow, a peer-reviewed publication or a simple scientific claim with supportive evidence. Existing vocabularies such as Dublin Core Terms (DC Terms) and the W3C Provenance Ontology (PROV-O) are domain-independent and general-purpose and they allow and encourage for extensions to cover more specific needs. In particular, to track authoring and versioning information of web resources, PROV-O provides a basic methodology but not any specific classes and properties for identifying or distinguishing between the various roles assumed by agents manipulating digital artifacts, such as author, contributor and curator. We present the Provenance, Authoring and Versioning ontology (PAV, namespace http://purl.org/pav/): a lightweight ontology for capturing "just enough" descriptions essential for tracking the provenance, authoring and versioning of web resources. We argue that such descriptions are essential for digital scientific content. PAV distinguishes between contributors, authors and curators of content and creators of representations in addition to the provenance of originating resources that have been accessed, transformed and consumed. We explore five projects (and communities) that have adopted PAV illustrating their usage through concrete examples. Moreover, we present mappings that show how PAV extends the W3C PROV-O ontology to support broader interoperability. The initial design of the PAV ontology was driven by requirements from the AlzSWAN project with further requirements incorporated later from other projects detailed in this paper. The authors strived to keep PAV lightweight and compact by including only those terms that have demonstrated to be pragmatically useful in existing applications, and by recommending terms from existing ontologies when plausible. We analyze and compare PAV with related approaches, namely Provenance Vocabulary (PRV), DC Terms and BIBFRAME. We identify similarities and analyze differences between those vocabularies and PAV, outlining strengths and weaknesses of our proposed model. We specify SKOS mappings that align PAV with DC Terms. We conclude the paper with general remarks on the applicability of PAV.

New Insights into the Provenance of the Southern Junggar Basin in the Jurassic from Heavy Mineral Analysis and Sedimentary Characteristics

NASA Astrophysics Data System (ADS)

Zhou, T. Q.; Wu, C.; Zhu, W.

2017-12-01

Being a vital component of foreland basin of Central-western China, Southern Junggar Basin has observed solid evidences of oil and gas in recent years without a considerable advancement. The key reason behind this is the lack of systematic study on sedimentary provenance analysis of the Southern Junggar basin. Three parts of the Southern Junggar basin, including the western segment (Sikeshu Sag), the central segment (Qigu Fault-Fold Belt) and the eastern segment (Fukang Fault Zone), possess varied provenance systems, giving rise to difficulties for oil-gas exploration. In this study, 3468 heavy minerals data as well as the sedimentary environment analysis of 10 profiles and 7 boreholes were used to investigate the provenances of the deposits in the southern Junggar basin . Based on this research, it reveals that: Sikeshu sag initially shaped the foreland basin prototype in the Triassic and its provenance area of the sediments from the Sikeshu sag has primarily been situated in zhongguai uplift-chepaizi uplift depositional systems located in the northwestern margin of the Junggar Basin. From the early Jurassic, the key sources were likely to be late Carboniferous to early Permain post-collisional volcanic rocks from the North Tian Shan block to Centrao Tian Shan. In the Xishanyao formation, Abundant lithic metamorphic, epidote and garnet that suggests the source rocks were possibly late Carboniferous subduction-related arc volcanic rocks of the Central Tian Shan. In the Toutunhe formation, Bogda Mountains began uplifting and gradually becoming the major provenance. Moreover, the sedimentary boundaries of Junggar basin have also shifted towards the North Tian Shan again. In the late Jurassic, the conglomerates of the Kalazha formation directly overlie the fine-grained red beds of Qigu formation, which throw light on the rapid tectonic uplift of the North Tian Shan. In the eastern segment, meandering river delta and shore-lacustrine environments were fully developed in Badaowan formation indicating that the provenance of sediments mainly derived from the Kelameili Mountains. During the late Jurassic, the rapid uplift of Bogda Mountains could result into the distinct difference in heavy mineral assemblages between the eastern segment and the central segments.

PAV ontology: provenance, authoring and versioning

PubMed Central

2013-01-01

Background Provenance is a critical ingredient for establishing trust of published scientific content. This is true whether we are considering a data set, a computational workflow, a peer-reviewed publication or a simple scientific claim with supportive evidence. Existing vocabularies such as Dublin Core Terms (DC Terms) and the W3C Provenance Ontology (PROV-O) are domain-independent and general-purpose and they allow and encourage for extensions to cover more specific needs. In particular, to track authoring and versioning information of web resources, PROV-O provides a basic methodology but not any specific classes and properties for identifying or distinguishing between the various roles assumed by agents manipulating digital artifacts, such as author, contributor and curator. Results We present the Provenance, Authoring and Versioning ontology (PAV, namespace http://purl.org/pav/): a lightweight ontology for capturing “just enough” descriptions essential for tracking the provenance, authoring and versioning of web resources. We argue that such descriptions are essential for digital scientific content. PAV distinguishes between contributors, authors and curators of content and creators of representations in addition to the provenance of originating resources that have been accessed, transformed and consumed. We explore five projects (and communities) that have adopted PAV illustrating their usage through concrete examples. Moreover, we present mappings that show how PAV extends the W3C PROV-O ontology to support broader interoperability. Method The initial design of the PAV ontology was driven by requirements from the AlzSWAN project with further requirements incorporated later from other projects detailed in this paper. The authors strived to keep PAV lightweight and compact by including only those terms that have demonstrated to be pragmatically useful in existing applications, and by recommending terms from existing ontologies when plausible. Discussion We analyze and compare PAV with related approaches, namely Provenance Vocabulary (PRV), DC Terms and BIBFRAME. We identify similarities and analyze differences between those vocabularies and PAV, outlining strengths and weaknesses of our proposed model. We specify SKOS mappings that align PAV with DC Terms. We conclude the paper with general remarks on the applicability of PAV. PMID:24267948

Innocent Until Proven Guilty

ERIC Educational Resources Information Center

Case, Catherine; Whitaker, Douglas

2016-01-01

In the criminal justice system, defendants accused of a crime are presumed innocent until proven guilty. Statistical inference in any context is built on an analogous principle: The null hypothesis--often a hypothesis of "no difference" or "no effect"--is presumed true unless there is sufficient evidence against it. In this…

Scab susceptibility of a provenance collection of pecan

USDA-ARS?s Scientific Manuscript database

Scab (caused by Fusicladium effusum) is the most economically destructive disease of pecan in the Southeast US. Epidemics are favored by rainfall and high humidity. A provenance collection of ~950 pecan trees from 19 locations representing the native range of the species is located in Byron, Georgia...

Phenylpropanoids are key players in the antioxidant defense to ozone of European ash, Fraxinus excelsior.

PubMed

Cotrozzi, Lorenzo; Campanella, Alessandra; Pellegrini, Elisa; Lorenzini, Giacomo; Nali, Cristina; Paoletti, Elena

2018-03-01

Physiological and biochemical responses to ozone (O 3 ) (150 ppb, 8 h day -1 , 35 consecutive days) of two Italian provenances (Piedmont and Tuscany) of Fraxinus excelsior L. were evaluated, with special attention to the role of phenylpropanoids. Our results indicate (i) the high O 3 sensitivity especially of Piedmont provenance (in terms of visible injury, water status, and photosynthetic apparatus); (ii) although the intra-specific sensitivity to O 3 between provenances differs (mainly due to different stomatal behaviors since only Tuscany plants partially avoided the uptake of the pollutant gas), both provenances showed detoxification and defense mechanisms; (iii) the crucial participation of phenylpropanoids, with a key role played by flavonoids (especially quercitrin): among this class of metabolites, isoquercitrin is the principal player in the lower O 3 sensitivity of Tuscany plants, together with lignins; (iv) although coumarins (typical compounds of Fraxinus) were severely depressed by O 3 , isofraxidin was triggered suggesting a key role in reactive oxygen species (ROS) detoxification, as well as trans-chalcone. Furthermore, the different behavior of verbascoside and oleuropein among provenances lead us to speculate on their influence in the tentatively repair or acclimation shown by Piedmont plants at the end of the exposure. Finally, the intra-specific O 3 sensitivity may be also due to de novo peaks triggered by O 3 not yet associated to some chemicals.

Exploring natural variation of Pinus pinaster Aiton using metabolomics: Is it possible to identify the region of origin of a pine from its metabolites?

PubMed

Meijón, Mónica; Feito, Isabel; Oravec, Michal; Delatorre, Carolina; Weckwerth, Wolfram; Majada, Juan; Valledor, Luis

2016-02-01

Natural variation of the metabolome of Pinus pinaster was studied to improve understanding of its role in the adaptation process and phenotypic diversity. The metabolomes of needles and the apical and basal section of buds were analysed in ten provenances of P. pinaster, selected from France, Spain and Morocco, grown in a common garden for 5 years. The employment of complementary mass spectrometry techniques (GC-MS and LC-Orbitrap-MS) together with bioinformatics tools allowed the reliable quantification of 2403 molecular masses. The analysis of the metabolome showed that differences were maintained across provenances and that the metabolites characteristic of each organ are mainly related to amino acid metabolism, while provenances were distinguishable essentially through secondary metabolism when organs were analysed independently. Integrative analyses of metabolome, environmental and growth data provided a comprehensive picture of adaptation plasticity in conifers. These analyses defined two major groups of plants, distinguished by secondary metabolism: that is, either Atlantic or Mediterranean provenance. Needles were the most sensitive organ, where strong correlations were found between flavonoids and the water regime of the geographic origin of the provenance. The data obtained point to genome specialization aimed at maximizing the drought stress resistance of trees depending on their origin. © 2016 John Wiley & Sons Ltd.

A semantic proteomics dashboard (SemPoD) for data management in translational research.

PubMed

Jayapandian, Catherine P; Zhao, Meng; Ewing, Rob M; Zhang, Guo-Qiang; Sahoo, Satya S

2012-01-01

One of the primary challenges in translational research data management is breaking down the barriers between the multiple data silos and the integration of 'omics data with clinical information to complete the cycle from the bench to the bedside. The role of contextual metadata, also called provenance information, is a key factor ineffective data integration, reproducibility of results, correct attribution of original source, and answering research queries involving "What", "Where", "When", "Which", "Who", "How", and "Why" (also known as the W7 model). But, at present there is limited or no effective approach to managing and leveraging provenance information for integrating data across studies or projects. Hence, there is an urgent need for a paradigm shift in creating a "provenance-aware" informatics platform to address this challenge. We introduce an ontology-driven, intuitive Semantic Proteomics Dashboard (SemPoD) that uses provenance together with domain information (semantic provenance) to enable researchers to query, compare, and correlate different types of data across multiple projects, and allow integration with legacy data to support their ongoing research. The SemPoD platform, currently in use at the Case Center for Proteomics and Bioinformatics (CPB), consists of three components: (a) Ontology-driven Visual Query Composer, (b) Result Explorer, and (c) Query Manager. Currently, SemPoD allows provenance-aware querying of 1153 mass-spectrometry experiments from 20 different projects. SemPod uses the systems molecular biology provenance ontology (SysPro) to support a dynamic query composition interface, which automatically updates the components of the query interface based on previous user selections and efficiently prunes the result set usinga "smart filtering" approach. The SysPro ontology re-uses terms from the PROV-ontology (PROV-O) being developed by the World Wide Web Consortium (W3C) provenance working group, the minimum information required for reporting a molecular interaction experiment (MIMIx), and the minimum information about a proteomics experiment (MIAPE) guidelines. The SemPoD was evaluated both in terms of user feedback and as scalability of the system. SemPoD is an intuitive and powerful provenance ontology-driven data access and query platform that uses the MIAPE and MIMIx metadata guideline to create an integrated view over large-scale systems molecular biology datasets. SemPoD leverages the SysPro ontology to create an intuitive dashboard for biologists to compose queries, explore the results, and use a query manager for storing queries for later use. SemPoD can be deployed over many existing database applications storing 'omics data, including, as illustrated here, the LabKey data-management system. The initial user feedback evaluating the usability and functionality of SemPoD has been very positive and it is being considered for wider deployment beyond the proteomics domain, and in other 'omics' centers.

Barcode haplotype variation in North American agroecosystem ladybird beetles (Coleoptera: Coccinellidae

USDA-ARS?s Scientific Manuscript database

DNA barcodes have proven invaluable in identifying and distinguishing insect pests, for example for determining the provenance of exotic invasives, but relatively few insect natural enemies have been barcoded. We used Folmer et al.’s universal invertebrate primers (1994), and those designed by Heber...

Spanish melons (Cucumis melo L.) of the Madrid provenance: A unique germplasm reservoir

USDA-ARS?s Scientific Manuscript database

Melon (Cucumis melo L.) landraces of the Madrid provenance, Spain, have received national distinction for their high fruit quality and sensorial attributes. More specifically, a unique array of Group Inodorus landraces have been continuously cultivated and conserved by farmers in the municipality o...

Response of different white fir geographic provenances to Trichosporium symbioticum inoculation in California

Treesearch

William J. Otrosina; Stanley J. Zarnoch

2012-01-01

We inoculated the fir engraver (Scolytus ventralis LeConte) associated fungus Trichosporium symbioticum Wright onto 56 white fir (Abies concolor (Gordon & Glend.) Lindl. ex Hildebr.) trees planted in a common garden study near Camino, California, that represented five geographic provenances of this species....

Differential susceptibility of white fir provenances to balsam twig aphid

Treesearch

George T. Ferrell

1989-01-01

Susceptibility of Oregon, California, Nevada, Utah, and Arizona provenances of white fir (Abies concolor [Gord. & Glend.] Lindl.) to crown injury caused by balsam twig aphid (Mindarus abietinus Koch.) was assessed in an experimental plantation in the central Sierra Nevada in California. Bud phenology was observed to explore...

Quantifying sediment provenance using multiple composite fingerprints in a small watershed in Oklahoma

USDA-ARS?s Scientific Manuscript database

Quantitative information on sediment provenance is badly needed for calibration and validation of process-based soil erosion models. However, sediment source data are rather limited due to difficulties in direct measurement of various source contributions at a watershed scale. The objectives are t...

Geographic variation in red alder.

Treesearch

D.T. Lester; D.S. DeBell

1989-01-01

A test of 10 provenances was established in 1969 on the central coast of Oregon. The provenances tested included Juneau, Alaska, and Sandpoint, Idaho, in addition to eight well-spaced locations in Oregon, Washington, and the southern end of Vancouver Island, British Columbia. Periodic measurements through 15 years of plantation development revealed differences among...

Understanding bias in provenance studies

NASA Astrophysics Data System (ADS)

Garzanti, Eduardo; Andò, Sergio; Malusà, Marco; Vezzoli, Giovanni

2010-05-01

Innumerable pieces of information are stored in the sedimentary archive. Each single sediment layer contains billions of detrital grains, and every grain preserves imprints of its geological story. If we learn to read, compare, and combine these messages properly, through a deeper understanding of physical and chemical processes that modify sediment composition during the sedimentary cycle, provenance analysis may eventually enable us to reconstruct more accurately the geological processes that shaped the Earth's crust in the past. Interpreting detrital modes is not straightforward because provenance signals issued from source rocks become progressively blurred by multiple noises in the sedimentary environment ("environmental bias"; Komar, 2007), and finally during post-depositional history ("diagenetic bias"; Morton and Hallsworth, 2007). During transport and deposition, detrital minerals are segregated in different size fractions and environments according to their size, density and shape (Rubey, 1933; Garzanti et al., 2008). Heavy-mineral concentration can increase by an order of magnitude due to selective-entrainment effects, with potentially overwhelming impact on chemical composition and provenance estimates based on detrital-geochronology data (Garzanti et al., 2009). Conversely, heavy-mineral concentration is typically reduced by an order of magnitude in Alpine and Himalayan foreland-basin deposits older than the Pleistocene (Garzanti and Andò, 2007). Extensive chemical dissolution can occur even prior to deposition during weathering in hot humid climates (Velbel, 2007). Primary provenance signals can be isolated and assessed by studying first modern sediments in hyperarid settings (i.e., free from diagenetic and weathering bias). Next, weathering, hydraulic-sorting, and diagenetic effects can be singled out by analysing sediments of similar provenance produced in contrasting climatic conditions, sediments transported in diverse modes and deposited in different subenvironments within a same system, and sediments of approximately constant provenance and progressively older age. Detangling the various interacting factors controlling mineralogical and chemical compositional variability is a fundamental pre-requisite to improve decisively not only on our ability to unravel provenance, but also to understand much about climatic, hydraulic, and diagenetic processes. Garzanti E., Andò S., 2007, Heavy-mineral concentration in modern sands: implications for provenance interpretation. In: Mange, M.A., Wright, D.T., (Eds.), Heavy Minerals in Use, Elsevier, Amsterdam, Developments in Sedimentology Series 58, 517-545. Garzanti, E., Andò, S., Vezzoli, G., 2008. Settling-equivalence of detrital minerals and grain-size dependence of sediment composition. Earth Planet. Sci. Lett. 273, 138-151. Garzanti E., Ando' S., Vezzoli G., 2009, Grain-size dependence of sediment composition and environmental bias in provenance studies, Earth Planet. Sci. Lett., 277, 422-432. Komar, P.D., 2007. The entrainment, transport and sorting of heavy minerals by waves and currents In: Mange, M.A., Wright, D.T., (Eds.), Heavy Minerals in Use, Elsevier, Amsterdam, Developments in Sedimentology Series 58, 3-48. Morton A.C., Hallsworth, C., 2007. Stability of detrital heavy minerals during burial diagenesis. In: Mange, M.A., Wright, D.T., (Eds.), Heavy Minerals in Use, Elsevier, Amsterdam, Developments in Sedimentology Series 58, 215-245. Rubey, W.W., 1933. The size-distribution of heavy minerals within a water-laid sandstone. J. Sedim. Petrol. 3, 3-29. Velbel, M.A., 2007. Surface textures and dissolution processes of heavy minerals in the sedimentary cycle: examples from pyroxenes and amphiboles. In: Mange, M.A., Wright, D.T., (Eds.), Heavy Minerals in Use, Elsevier, Amsterdam, Developments in Sedimentology Series 58, 113-150.

Microbial composition analyses by 16S rRNA sequencing: A proof of concept approach to provenance determination of archaeological ochre.

PubMed

Lenehan, Claire E; Tobe, Shanan S; Smith, Renee J; Popelka-Filcoff, Rachel S

2017-01-01

Many archaeological science studies use the concept of "provenance", where the origins of cultural material can be determined through physical or chemical properties that relate back to the origins of the material. Recent studies using DNA profiling of bacteria have been used for the forensic determination of soils, towards determination of geographic origin. This manuscript presents a novel approach to the provenance of archaeological minerals and related materials through the use of 16S rRNA sequencing analysis of microbial DNA. Through the microbial DNA characterization from ochre and multivariate statistics, we have demonstrated the clear discrimination between four distinct Australian cultural ochre sites.

ACSM Fitness Book: A Proven Step-By-Step Program from the Experts. Third Edition.

ERIC Educational Resources Information Center

American Coll. of Sports Medicine, Indianapolis, IN.

This offers advice on the health benefits of regular physical activity. It includes a scientifically proven fitness test to determine one's starting point and monitor ongoing progress, offering step-by-step instructions, sample programs, and insights on nutrition, weight control, motivation, and overcoming setbacks. Seven chapters examine: (1)…

Preparing All Teachers to Use Proven, Effective Instructional Methods across the Curriculum.

ERIC Educational Resources Information Center

Southern Regional Education Board (SREB), 2012

2012-01-01

Research has shown that certain ways of teaching can make a difference in whether students learn standards-based content. Many strategies have proven to be effective in teaching literacy, mathematics, science and social studies. These strategies have facilitated blending academic and career/technical subjects to make learning more meaningful for…

Community Education Proven Practices II: Networking Strategies.

ERIC Educational Resources Information Center

Arkansas State Dept. of Education, Little Rock.

Designed to be used by those who wish to initiate or further develop community education programs at the state and local levels, this publication is one of a series of "Proven Practices" developed by federally-funded state and local community education projects. The booklet describes the administrative design and the process used to…

A Winning Bet

ERIC Educational Resources Information Center

Boulard, Garry

2011-01-01

Indian gaming has proven to be a very good thing for all students in Oklahoma, but particularly tribal college students. It also has proven to be remarkably popular, even in the face of the national recession. The Creek Nation operates several casinos in the state, the main one being the River Spirit in Tulsa. The performance of any gaming varies…

Scab susceptibility of a provenance collection of pecan in in the southeastern USA

USDA-ARS?s Scientific Manuscript database

Pecan scab is the most economically destructive disease of pecan in the Southeast US. It is spread in rain and is widespread in the Southeast where conditions conducive to epidemics. A provenance collection of pecan from 19 locations representing the native range of the tree is located in Byron, Geo...

Sycamore Seed Germination: The Effects of Provenance, Stratification, Temperature, and Parent Tree

Treesearch

Charles D. Webb; Robert E. Farmer

1968-01-01

Various stratification periods and germination temperatures were applied to sycamore seed collected along the Chattahoochee River from north Georgia to west Florida. Results showed that percent and speed of germination were greater for seed from southern than from northern provenances. Percent and speed of germination increased as temperature increased. The...

This idea worth anything? Mechanics of technology transfer.

PubMed

Goodson, J Max

2006-01-01

The path from a proven scientific idea to a commercially viable product is seldom easy. It often requires ten or more years and millions of dollars. The essential elements include a creative concept that has been proven sound, identification of the commercial applicability of the concept, and financing and management of the development process.

Leading Change Step-by-Step: Tactics, Tools, and Tales

ERIC Educational Resources Information Center

Spiro, Jody

2010-01-01

"Leading Change Step-by-Step" offers a comprehensive and tactical guide for change leaders. Spiro's approach has been field-tested for more than a decade and proven effective in a wide variety of public sector organizations including K-12 schools, universities, international agencies and non-profits. The book is filled with proven tactics for…

Performance of the definitions of the systemic inflammatory response syndrome and sepsis in neonates.

PubMed

Hofer, Nora; Zacharias, Eva; Müller, Wilhelm; Resch, Bernhard

2012-09-01

The aim of this study was to examine the applicability of the definitions of the systemic inflammatory response syndrome (SIRS) and sepsis to neonates during the first 3 days of life. This is a retrospective study of all term neonates hospitalized within the first 24 h of life from 2004 to 2010 at our neonatal intensive care unit. Of 476 neonates, 30 (6 %) had a diagnosis of culture-proven early-onset sepsis (EOS) and 81 (17 %) had culture-negative clinical EOS or suspected EOS. SIRS and sepsis criteria were applied to 116 (24 %) and 61 (13 %) neonates, respectively. Of 30 neonates with culture proven, EOS 14 (53 %) fulfilled SIRS and sepsis criteria. The single diagnostic criterion of SIRS applied to 20 % (hypothermia or fever), 43 % (white blood cell count/immature-to-total neutrophil ratio), 87 % (respiratory symptoms), and 33 % (cardiocirculatory symptoms) of all neonates with culture-proven EOS. The definitions of SIRS and sepsis did not apply to about half of all cases of culture-proven EOS. An evidence-based approach to find the appropriate criteria for defining EOS in the neonate is needed.

Provenance Representation in the Global Change Information System (GCIS)

NASA Technical Reports Server (NTRS)

Tilmes, Curt

2012-01-01

Global climate change is a topic that has become very controversial despite strong support within the scientific community. It is common for agencies releasing information about climate change to be served with Freedom of Information Act (FOIA) requests for everything that led to that conclusion. Capturing and presenting the provenance, linking to the research papers, data sets, models, analyses, observation instruments and satellites, etc. supporting key findings has the potential to mitigate skepticism in this domain. The U.S. Global Change Research Program (USGCRP) is now coordinating the production of a National Climate Assessment (NCA) that presents our best understanding of global change. We are now developing a Global Change Information System (GCIS) that will present the content of that report and its provenance, including the scientific support for the findings of the assessment. We are using an approach that will present this information both through a human accessible web site as well as a machine readable interface for automated mining of the provenance graph. We plan to use the developing W3C PROV Data Model and Ontology for this system.

Phenolic profile, antioxidant capacity of five Ziziphus spina-christi (L.) Willd provenances and their allelopathic effects on Trigonella foenum-graecum L. and Lens culinaris L. seeds.

PubMed

Elaloui, M; Ghazghazi, H; Ennajah, A; Manaa, S; Guezmir, W; Karray, N B; Laamouri, A

2017-05-01

The aim of this work was to evaluate some secondary metabolites, antioxidant activity of methanolic leaf extracts of five Ziziphus spina-christi provenances (INRGREF, Tozeur, Degueche, Nafta and Kebelli) and their allelopathic effects on Trigonella foenum-graecum and Lens culinaris. Leaves were collected during 2013 and 2014. Total phenols, flavonoids, tannins and antioxidant activity were evaluated using the Folin ciocalteux, Aluminum trichloride, vanillin and scavenging activity on 22-diphenyl-1-picrylhydrazyl (DPPH) radical methods, respectively. Total phenols, tannins and flavonoids were present, at levels of 57.41 mg GAE/g DW, 31.98 mg RE/g DW and 14.68 μg CE/g DW, respectively. The high antioxidant activity (0.086 μg/mL) was noted in kebelli provenance (2013). The highest germination, plumule and radicle lengths of tested species were observed in INRGREF provenance. Z. spina-christi leaf extracts may be suggested in foods and pharmaceutical industries. Leaf extracts could also provide a natural herbicide with a positive impact on the environment.

Lab and Field Warming Similarly Advance Germination Date and Limit Germination Rate for High and Low Elevation Provenances of Two Widespread Subalpine Conifers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kueppers, Lara; Faist, Akasha; Ferrenberg, Scott

Accurately predicting upslope shifts in subalpine tree ranges with warming requires understanding how future forest populations will be affected by climate change, as these are the seed sources for new tree line and alpine populations. Early life history stages are particularly sensitive to climate and are also influenced by genetic variation among populations. Here, we tested the climate sensitivity of germination and initial development for two widely distributed subalpine conifers, using controlled-environment growth chambers with one temperature regime from subalpine forest in the Colorado Rocky Mountains and one 5 °C warmer, and two soil moisture levels. We also tracked germinationmore » rate and timing, rate of seedling development, and seedling morphology for two seed provenances separated by ~300 m elevation. Warming advanced germination timing and initial seedling development by a total of ~2 weeks, advances comparable to mean differences between provenances. Advances were similar for both provenances and species; however, warming reduced the overall germination rate, as did low soil moisture, only for Picea engelmannii. A three-year field warming and watering experiment planted with the same species and provenances yielded responses qualitatively consistent with the lab trials. Altogether these experiments indicate that in a warmer, drier climate, P. engelmannii germination, and thus regeneration, could decline, which could lead to declining subalpine forest populations, while Pinus flexilis forest populations could remain robust as a seed source for upslope range shifts.« less

Lab and Field Warming Similarly Advance Germination Date and Limit Germination Rate for High and Low Elevation Provenances of Two Widespread Subalpine Conifers

DOE PAGES

Kueppers, Lara; Faist, Akasha; Ferrenberg, Scott; ...

2017-11-11

Accurately predicting upslope shifts in subalpine tree ranges with warming requires understanding how future forest populations will be affected by climate change, as these are the seed sources for new tree line and alpine populations. Early life history stages are particularly sensitive to climate and are also influenced by genetic variation among populations. Here, we tested the climate sensitivity of germination and initial development for two widely distributed subalpine conifers, using controlled-environment growth chambers with one temperature regime from subalpine forest in the Colorado Rocky Mountains and one 5 °C warmer, and two soil moisture levels. We also tracked germinationmore » rate and timing, rate of seedling development, and seedling morphology for two seed provenances separated by ~300 m elevation. Warming advanced germination timing and initial seedling development by a total of ~2 weeks, advances comparable to mean differences between provenances. Advances were similar for both provenances and species; however, warming reduced the overall germination rate, as did low soil moisture, only for Picea engelmannii. A three-year field warming and watering experiment planted with the same species and provenances yielded responses qualitatively consistent with the lab trials. Altogether these experiments indicate that in a warmer, drier climate, P. engelmannii germination, and thus regeneration, could decline, which could lead to declining subalpine forest populations, while Pinus flexilis forest populations could remain robust as a seed source for upslope range shifts.« less

Phenotypic plasticity facilitates resistance to climate change in a highly variable environment.

PubMed

Richter, Sarah; Kipfer, Tabea; Wohlgemuth, Thomas; Calderón Guerrero, Carlos; Ghazoul, Jaboury; Moser, Barbara

2012-05-01

Increased summer drought will exacerbate the regeneration of many tree species at their lower latitudinal and altitudinal distribution limits. In vulnerable habitats, introduction of more drought-tolerant provenances or species is currently considered to accelerate tree species migration and facilitate forest persistence. Trade-offs between drought adaptation and growth plasticity might, however, limit the effectiveness of assisted migration, especially if introductions focus on provenances or species from different climatic regions. We tested in a common garden experiment the performance of Pinus sylvestris seedlings from the continental Central Alps under increased temperatures and extended spring and/or summer drought, and compared seedling emergence, survival and biomass allocation to that of P. sylvestris and closely related Pinus nigra from a Mediterranean seed source. Soil heating had only minor effects on seedling performance but high spring precipitation doubled the number of continental P. sylvestris seedlings present after the summer drought. At the same time, twice as many seedlings of the Mediterranean than the continental P. sylvestris provenance were present, which was due to both higher emergence and lower mortality under dry conditions. Both P. sylvestris provenances allocated similar amounts of biomass to roots when grown under low summer precipitation. Mediterranean seedlings, however, revealed lower phenotypic plasticity than continental seedlings under high precipitation, which might limit their competitive ability in continental Alpine forests in non-drought years. By contrast, high variability in the response of individual seedlings to summer drought indicates the potential of continental P. sylvestris provenances to adapt to changing environmental conditions.

Citation and Recognition of contributions using Semantic Provenance Knowledge Captured in the OPeNDAP Software Framework

NASA Astrophysics Data System (ADS)

West, P.; Michaelis, J.; Lebot, T.; McGuinness, D. L.; Fox, P. A.

2014-12-01

Providing proper citation and attribution for published data, derived data products, and the software tools used to generate them, has always been an important aspect of scientific research. However, It is often the case that this type of detailed citation and attribution is lacking. This is in part because it often requires manual markup since dynamic generation of this type of provenance information is not typically done by the tools used to access, manipulate, transform, and visualize data. In addition, the tools themselves lack the information needed to be properly cited themselves. The OPeNDAP Hyrax Software Framework is a tool that provides access to and the ability to constrain, manipulate, and transform, different types of data from different data formats, into a common format, the DAP (Data Access Protocol), in order to derive new data products. A user, or another software client, specifies an HTTP URL in order to access a particular piece of data, and appropriately transform it to suit a specific purpose of use. The resulting data products, however, do not contain any information about what data was used to create it, or the software process used to generate it, let alone information that would allow the proper citing and attribution to down stream researchers and tool developers. We will present our approach to provenance capture in Hyrax including a mechanism that can be used to report back to the hosting site any derived products, such as publications and reports, using the W3C PROV recommendation pingback service. We will demonstrate our utilization of Semantic Web and Web standards, the development of an information model that extends the PROV model for provenance capture, and the development of the pingback service. We will present our findings, as well as our practices for providing provenance information, visualization of the provenance information, and the development of pingback services, to better enable scientists and tool developers to be recognized and properly cited for their contributions.

Full Life Cycle of Data Analysis with Climate Model Diagnostic Analyzer (CMDA)

NASA Astrophysics Data System (ADS)

Lee, S.; Zhai, C.; Pan, L.; Tang, B.; Zhang, J.; Bao, Q.; Malarout, N.

2017-12-01

We have developed a system that supports the full life cycle of a data analysis process, from data discovery, to data customization, to analysis, to reanalysis, to publication, and to reproduction. The system called Climate Model Diagnostic Analyzer (CMDA) is designed to demonstrate that the full life cycle of data analysis can be supported within one integrated system for climate model diagnostic evaluation with global observational and reanalysis datasets. CMDA has four subsystems that are highly integrated to support the analysis life cycle. Data System manages datasets used by CMDA analysis tools, Analysis System manages CMDA analysis tools which are all web services, Provenance System manages the meta data of CMDA datasets and the provenance of CMDA analysis history, and Recommendation System extracts knowledge from CMDA usage history and recommends datasets/analysis tools to users. These four subsystems are not only highly integrated but also easily expandable. New datasets can be easily added to Data System and scanned to be visible to the other subsystems. New analysis tools can be easily registered to be available in the Analysis System and Provenance System. With CMDA, a user can start a data analysis process by discovering datasets of relevance to their research topic using the Recommendation System. Next, the user can customize the discovered datasets for their scientific use (e.g. anomaly calculation, regridding, etc) with tools in the Analysis System. Next, the user can do their analysis with the tools (e.g. conditional sampling, time averaging, spatial averaging) in the Analysis System. Next, the user can reanalyze the datasets based on the previously stored analysis provenance in the Provenance System. Further, they can publish their analysis process and result to the Provenance System to share with other users. Finally, any user can reproduce the published analysis process and results. By supporting the full life cycle of climate data analysis, CMDA improves the research productivity and collaboration level of its user.

How the provenance of electronic health record data matters for research: a case example using system mapping.

PubMed

Johnson, Karin E; Kamineni, Aruna; Fuller, Sharon; Olmstead, Danielle; Wernli, Karen J

2014-01-01

The use of electronic health records (EHRs) for research is proceeding rapidly, driven by computational power, analytical techniques, and policy. However, EHR-based research is limited by the complexity of EHR data and a lack of understanding about data provenance, meaning the context under which the data were collected. This paper presents system flow mapping as a method to help researchers more fully understand the provenance of their EHR data as it relates to local workflow. We provide two specific examples of how this method can improve data identification, documentation, and processing. EHRs store clinical and administrative data, often in unstructured fields. Each clinical system has a unique and dynamic workflow, as well as an EHR customized for local use. The EHR customization may be influenced by a broader context such as documentation required for billing. We present a case study with two examples of using system flow mapping to characterize EHR data for a local colorectal cancer screening process. System flow mapping demonstrated that information entered into the EHR during clinical practice required interpretation and transformation before it could be accurately applied to research. We illustrate how system flow mapping shaped our knowledge of the quality and completeness of data in two examples: (1) determining colonoscopy indication as recorded in the EHR, and (2) discovering a specific EHR form that captured family history. Researchers who do not consider data provenance risk compiling data that are systematically incomplete or incorrect. For example, researchers who are not familiar with the clinical workflow under which data were entered might miss or misunderstand patient information or procedure and diagnostic codes. Data provenance is a fundamental characteristic of research data from EHRs. Given the diversity of EHR platforms and system workflows, researchers need tools for evaluating and reporting data availability, quality, and transformations. Our case study illustrates how system mapping can inform researchers about the provenance of their data as it pertains to local workflows.

Insights into the Geographic Sequence of Deglaciation in the Weddell Sea Embayment by Provenance of Ice-Rafted Debris

NASA Astrophysics Data System (ADS)

Williams, T.; Hemming, S. R.; Licht, K.; Agrios, L.; Brachfeld, S. A.; van de Flierdt, T.; Hillenbrand, C. D.; Ehrmann, W. U.; Zhai, X.; Cai, Y.; Corley, A. D.; Kuhn, G.

2017-12-01

The geochemical and geochronological fingerprint of rock debris eroded and carried by ice streams may be used to identify the provenance of iceberg-rafted debris (IRD) in the marine sediment record. During ice retreat following glacial maxima, it has been shown that there is an increase in IRD accumulation in marine sediments underlying the western limb of the Weddell Gyre. Here we present IRD provenance records from sediment core PS1571-1 in the NW Weddell Sea, and interpret these records in terms of the geographic sequence of ice sheet retreat in the Weddell Sea embayment during the most recent deglaciation. We first characterize the source areas of eroded debris around the Weddell Sea Embayment, using published mapping of the embayment and new material from: 1. Till in modern moraines at the edges of ice streams, including the Foundation Ice Stream, the Academy Glacier, and the Recovery Glacier; and 2. Subglacial till and proximal glaciomarine sediment from existing cores located along the front of the Filchner and Ronne Ice Shelves, collected on past expeditions of the RV Polarstern. The analyses on these samples include 40Ar/39Ar hornblende and biotite thermochronology and U-Pb zircon geochronology on individual mineral grains, and K-Ar thermochronology, Nd isotopes, and clay mineralogy on the clay grain size fraction. Results so far indicate that samples along the front of the Filchner and Ronne Ice Shelves record the geochemical and geochronological fingerprint that would be expected from tracing ice flow lines back to the bedrock terranes. The Ronne (west), Hughes (central), and Filchner (east) sectors have distinguishable provenance source signatures, and further subdivision is possible. In core PS1571-1, downcore IRD provenance changes reflect iceberg output and ice sheet retreat from the different sectors of the embayment through the last deglaciation. The detrital provenance method of interpreting the geographic sequence of ice retreat can equally be applied to previous deglaciations of the Weddell Sea Embayment.

PI-RADS version 2 for prediction of pathological downgrading after radical prostatectomy: a preliminary study in patients with biopsy-proven Gleason Score 7 (3+4) prostate cancer.

PubMed

Woo, Sungmin; Kim, Sang Youn; Lee, Joongyub; Kim, Seung Hyup; Cho, Jeong Yeon

2016-10-01

To evaluate PI-RADSv2 for predicting pathological downgrading after radical prostatectomy (RP) in patients with biopsy-proven Gleason score (GS) 7(3+4) PC. A total of 105 patients with biopsy-proven GS 7(3+4) PC who underwent multiparametric prostate MRI followed by RP were included. Two radiologists assigned PI-RADSv2 scores for each patient. Preoperative clinicopathological variables and PI-RADSv2 scores were compared between patients with and without downgrading after RP using the Wilcoxon rank sum test or Fisher's exact test. Logistic regression analyses with Firth's bias correction were performed to assess their association with downgrading. Pathological downgrading was identified in ten (9.5 %) patients. Prostate-specific antigen (PSA), PSA density, percentage of cores with GS 7(3+4), and greatest percentage of core length (GPCL) with GS 7(3+4) were significantly lower in patients with downgrading (p = 0.002-0.037). There was no significant difference in age and clinical stage (p = 0.537-0.755). PI-RADSv2 scores were significantly lower in patients with downgrading (3.8 versus 4.4, p = 0.012). At univariate logistic regression analysis, PSA, PSA density, and PI-RADSv2 scores were significant predictors of downgrading (p = 0.003-0.022). Multivariate analysis revealed only PSA density and PI-RADSv2 scores as independent predictors of downgrading (p = 0.014-0.042). The PI-RADSv2 scoring system was an independent predictor of pathological downgrading after RP in patients with biopsy-proven GS 7(3+4) PC. • PI-RADSv2 was an independent predictor of downgrading in biopsy-proven GS 7(3+4) PC • PSA density was also an independent predictor of downgrading • MRI may assist in identifying AS candidates in biopsy-proven GS 7(3+4) PC patients.

Provenance discrimination of sediments in the Zhejiang-Fujian mud belt, East China Sea: Implications for the development of the mud depocenter

NASA Astrophysics Data System (ADS)

Liu, Xiting; Li, Anchun; Dong, Jiang; Lu, Jian; Huang, Jie; Wan, Shiming

2018-01-01

In the past decade, the 800 km elongated mud belt off Zhejiang-Fujian coast, East China Sea (ECS), has been extensively studied for understanding the source to sink processes on the East Asian continental margin in the context of the Asian monsoon. However, to better understand the sediment source and dispersal pattern, the existing mineralogical and geochemical data of adjacent river systems, including the Changjiang River (CJR) and local rivers in Zhejiang, Fujian and Taiwan, need to be systematically reviewed. Therefore, various indicators from published literatures for the provenance discrimination in the mud belt have been summarised in this article. The results show that high diversity of clay mineral assemblages in fluvial sediments being supplied into the mud belt, e.g., dominant illite and chlorite in the CJR, absence of smectite in Taiwan rivers, similar amounts of the four clay mineral species in Zhejiang rivers, and dominant kaolinite in Fujian rivers. On heavy mineralogy, the CJR is dominated by dolomite, hornblende, and flaky minerals; and among of them, dolomite is distinctive for the CJR. For geochemical approaches, elemental compositions, combined with strontium and neodymium isotopes, reflect strong provenance control. However, geochemical and mineralogical compositions are found to vary with grain size, and thus extra caution should be taken when using these parameters as provenance indicator to discriminate the marine sediments with variety of grain-size fractions. In addition, pyrrhotite, occurred in fluvial sediments from western Taiwan, has not been found in sediments derived from mainland China, indicating that magnetic parameters could be used to discriminate sediment provenance. The mud belt formed during sea-level highstand, when modern current system in the ECS has been established, resulting in sediments derived from the CJR have been transported southward since 8 ka. In addition, sediment provenances have not been constant since initiation of the mud belt in response to climatic and oceanographic changes during the Holocene, which has been documented by mineral and geochemical signals. Nevertheless significant studies have been carried out, to better understand the formation mechanism for the mud belt and its implications for environmental changes, further studies on sediment provenance throughout the Holocene, in situ observation, and sedimentation dynamical modelling are required.

Ontology development for provenance tracing in National Climate Assessment of the US Global Change Research Program

NASA Astrophysics Data System (ADS)

Ma, X.; Zheng, J. G.; Goldstein, J.; Duggan, B.; Xu, J.; Du, C.; Akkiraju, A.; Aulenbach, S.; Tilmes, C.; Fox, P. A.

2013-12-01

The periodical National Climate Assessment (NCA) of the US Global Change Research Program (USGCRP) [1] produces reports about findings of global climate change and the impacts of climate change on the United States. Those findings are of great public and academic concerns and are used in policy and management decisions, which make the provenance information of findings in those reports especially important. The USGCRP is developing a Global Change Information System (GCIS), in which the NCA reports and associated provenance information are the primary records. We were modeling and developing Semantic Web applications for the GCIS. By applying a use case-driven iterative methodology [2], we developed an ontology [3] to represent the content structure of a report and the associated provenance information. We also mapped the classes and properties in our ontology into the W3C PROV-O ontology [4] to realize the formal presentation of provenance. We successfully implemented the ontology in several pilot systems for a recent National Climate Assessment report (i.e., the NCA3). They provide users the functionalities to browse and search provenance information with topics of interest. Provenance information of the NCA3 has been made structured and interoperable by applying the developed ontology. Besides the pilot systems we developed, other tools and services are also able to interact with the data in the context of the 'Web of data' and thus create added values. Our research shows that the use case-driven iterative method bridges the gap between Semantic Web researchers and earth and environmental scientists and is able to be deployed rapidly for developing Semantic Web applications. Our work also provides first-hand experience for re-using the W3C PROV-O ontology in the field of earth and environmental sciences, as the PROV-O ontology is recently ratified (on 04/30/2013) by the W3C as a recommendation and relevant applications are still rare. [1] http://www.globalchange.gov [2] Fox, P., McGuinness, D.L., 2008. TWC Semantic Web Methodology. Accessible at: http://tw.rpi.edu/web/doc/TWC_SemanticWebMethodology [3] https://scm.escience.rpi.edu/svn/public/projects/gcis/trunk/rdf/schema/GCISOntology.ttl [4] http://www.w3.org/TR/prov-o/

Graphical representations of the chemistry of garnets in a three-dimensional MATLAB based provenance plot

NASA Astrophysics Data System (ADS)

Knierzinger, Wolfgang; Palzer, Markus; Wagreich, Michael; Meszar, Maria; Gier, Susanne

2016-04-01

A newly developed, MATLAB based garnet provenance plot allows a three-dimensional tetrahedral representation of the chemistry of garnets for the endmembers almandine, pyrope, spessartine and grossular. Based on a freely accessible database of Suggate & Hall (2013) and additional EPMA-data on the internet, the chemistry of more than 2500 garnets was evaluated and used to create various subfields that correspond to different facies conditions of metapelitic, metasomatic and metaigneous rocks as well as granitic rocks. These triangulated subfields act as reference structures within the tetrahedron, facilitating assignments of garnet chemistries to different lithologies. In comparison with conventional tenary garnet discrimination diagrams by Mange & Morton (2007), Wright/Preston et al. (1938/2002) and Aubrecht et al. (2009), this tetrahedral provenance plot enables a better assessment of the conditions of formation of garnets by reducing the overlapping of certain subfields. In particular, a clearer distinction between greenschist facies rocks, amphibolite facies rocks and granitic rocks can be achieved. First applications of the tetrahedral garnet plot provided new insights on sedimentary processes during the Lower Miocene in the pre-Alpine Molasse basin. Bibliography Aubrecht, R., Meres, S., Sykora, M., Mikus, T. (2009). Provenance of the detrital garnets and spinels from the Albian sediments of the Czorsztyn Unit (Pieniny Klippen Belt , Western Carpathians, Slovakia). In: Geologica Carpathica, Dec. 2009, 60, 6, pp. 463-483. Mange, M.A., Morton, A.C. (2007). Geochemistry of Heavy Minerals. In: Mange, M.A. & Wright, D.T.(2007).Heavy Minerals in Use, Amsterdam, pp. 345-391. Preston, J., Hartley, A., Mange-Rajetzky, M., Hole, M., May, G., Buck, S., Vaughan, L. (2002). The provenance of Triassic continental sandstones from the Beryl Field, northern North Sea: Mineralogical, geochemical and sedimentological constraints. In: Journal of Sedimentary Research, 72, pp. 18-29. Suggate, S.M., Hall, R., (2013). Using detrital garnet compositions to determine provenance: a new compositional database and procedure. In: Scott, R.A., Smyth, H.R., Morton, A.C., Richardson, N. (Eds.), Sediment Provenance Studies in Hydrocarbon Exploration and Production. Geological Society of London, Special Publication, 386. http://dx.doi.org/10.1144/SP386.8 Wright, W.I., (1938).The composition and occurrence of garnets. In: American Mineralogist, 23,pp. 436 - 449.

Don't leave data unattended at any time!

NASA Astrophysics Data System (ADS)

Fleischer, D.; Czerniak, A.; Schirnick, C.

2013-12-01

The architecture of Kiel Data Management Infrastructure (KDMI) is setup to serve from the data creation process all the way to the data publication procedure. Accordingly the KDMI is managing data at the right beginning of the data life cycle and does not leave data unattended at this very crucial time. Starting from the chosen working procedure to handwritten protocols or lab notes the provenance of the resulting research data is captured within the KDMI. The provenance definition system is the fundamental (see figure 1) capturing tool for working procedures. The provenance definition is used to enable data input by file import, web client or hand writing recognition. The captured data in the provenance system for data is taking care of unpublished in house research data created directly on site. This system serves as a master for research data systems with more degrees of freedom in regard to technology, design or performance (e.g. GraphDB, etc). Such research systems can be regarded as compilations of unpublished data and public domain data e.g. from World Data Centers or archives. These compilations can be used to run statistical data mining and pattern finding algorithms on these specially designed platforms. The architecture of the KDMI ensures that a technical solution for data correction from the slave systems to the master system is possible and improves the quality of the stored data in the provenance system for data. After the research phase is over and the interpretation is finished the provenance system is used by a workflow based publication system called PubFlow. Within PubFlow it is possible to create repeatable workflows to publish data into various external long-term archives or World Data Center. The KDMI is based on the utilization of persistent identifiers for samples and person identities to support this automatized publication process. The publication process is the final step of the KDMI and the management responsibility of the long-term part of the data life cycle is handed over to the chosen archive. Nevertheless the provenance information remains at the KDMI and the definition maybe serves for future datasets again. Unattended data may get lost or be destroyed Usage cycle of the Kiel Data Management Infrastructure (KDMI)

Provenance testing at Michigan Technological University

Treesearch

Robert L. Sajdak

1970-01-01

The location of M.T.U. in the Keweenaw Peninsula of Upper Michigan provides some unique advantages and disadvantages in provenance testing and tree improvement research. Extremes in summer and winter temperatures are uncommon because of the moderating effect of Lake Superior. Near the Lake we have about 140 frost-free days while inland the frost-free season is only 80...

Missing Rings, Synchronous Growth, and Ecological Disturbance in a 36-Year Pitch Pine (Pinus rigida) Provenance Study

Treesearch

Caroline Leland; John Hom; Nicholas Skowronski; F. Thomas Ledig; Paul J. Krusic; Edward R. Cook; Dario Martin-Benito; Javier Martin-Fernandez; Neil Pederson; Dusan Gomory

2016-01-01

Provenance studies are an increasingly important analog for understanding how trees adapted to particular climatic conditions might respond to climate change. Dendrochronological analysis can illuminate differences among trees from different seed sources in terms of absolute annual growth and sensitivity to external growth factors. We analyzed annual radial growth of...

Height and seasonal growth pattern of jack pine full-sib families

Treesearch

Don E. Riemenschneider

1981-01-01

Total tree height, seasonal shoot elongation, dates of growth initiation and cessation, and mean daily growth rate were measured and analyzed for a population of jack pine full-sib families derived from inter-provenance crosses. Parental provenance had no effect on these variables although this may have been due to small sample size. Progenies differed significantly...

Using Motivational Interviewing with School-Age Bullies: A New Use for a Proven, Evidence-Based Intervention

ERIC Educational Resources Information Center

Juhnke, Brenna A.; Juhnke, Gerald A.; Curtis, Russell C.; Thompson, E. Heather; Coll, Kenneth M.; Yu, Fangzhou; Moyer, Michael S.; Mullett, Alison

2013-01-01

Motivational interviewing is a proven, evidence-based intervention. It has been successfully utilized as a potent intervention with students presenting a broad range of concerns from substance abuse to obesity. To date, however, no articles exist within the general counseling literature or the "Journal of School Counseling" specifically…

Provenance Store Evaluation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Paulson, Patrick R.; Gibson, Tara D.; Schuchardt, Karen L.

2008-03-01

Requirements for the provenance store and access API are developed. Existing RDF stores and APIs are evaluated against the requirements and performance benchmarks. The team’s conclusion is to use MySQL as a database backend, with a possible move to Oracle in the near-term future. Both Jena and Sesame’s APIs will be supported, but new code will use the Jena API

Scots pine in eastern Nebraska: A provenance study

Treesearch

Ralph A. Read

1971-01-01

Seedling progenies of 36 rangewide provenances of Scots pine (Pinus sylvestris) were established in a field test in eastern Nebraska. Results in growth and other characteristics after 8 years reveal that (1) southern origins bordering the Mediterranean grow slowly to moderately fast and remain dark green in winter, (2) central European origins grow very fast and turn...

Chemical Variation of Silicate Mineral Phases in Lunar Feldspathic Granulitic Impactites: Implications for Thermal Histories and Provenances

NASA Technical Reports Server (NTRS)

Fincke, E. M.; Ryder, G.

2001-01-01

We report on the internal variation and abundances of minor elements of silicate phases in lunar granulitic impactites to assess their thermal histories and the pre-metamorphic provenances of the minerals and the process that assembled the rocks. Additional information is contained in the original extended abstract.

Height growth and foliage color in a Scotch pine provenance study in northern Michigan

Treesearch

Peter W. Garrett

1969-01-01

A Scotch pine provenance study conducted in northern Michigan revealed important differences in height growth and foliage color among seedlings from 83 European sources. Seed from southern European sources produced seedlings with the best fall foliage coloration. Height growth was fastest among seedlings from sources with latitudes like that of the Michigan planting...

Library/IT Relations: Down the Hatch

ERIC Educational Resources Information Center

Schaffhauser, Dian

2010-01-01

Small and midsize institutions have proven the success of a blended library/IT organization, a hybrid model in which both librarians and IT professionals report to the same senior leader. What hasn't been proven is how well such a blend works for larger universities. There the challenge has become part of the larger institutional budget debate:…

Test of a natural enemy hypothesis on plant provenance: Spider abundance in native and exotic ornamental landscapes

USDA-ARS?s Scientific Manuscript database

There is heightened interest in effects that the provenance of plants in the landscape has on animals inhabiting them. There is an increasing body of research on insect herbivores, but less attention has been paid to arthropod natural enemies. This question is of great interest for designers of urba...

Protru: Leveraging Provenance to Enhance Network Trust in a Wireless Sensor Network

ERIC Educational Resources Information Center

Dogan, Gulustan

2013-01-01

Trust can be an important component of wireless sensor networks for believability of the produced data and historical value is a crucial asset in deciding trust of the data. A node's trust can change over time after its initial deployment due to various reasons such as energy loss, environmental conditions or exhausting sources. Provenance can…

Introduction of ponderosa pine and Douglas-fir to Argentina

Treesearch

Gerald E. Rehfeldt; Leonardo A. Gallo

2001-01-01

Patterns of shoot elongation of 2-yr seedlings from native North American populations of ponderosa pine and Douglas-fir were compared to those of Argentine land races originating from unknown provenances. The comparisons were conducted in Moscow, Idaho (USA), and suggested that the ponderosa pine land race was descended from a California provenance at low or middle...

Probiotics in Children: What Is the Evidence?

PubMed Central

2017-01-01

The number of papers discussing probiotics increases tremendously that limits the possibility for primary care physicians and clinicians to stay updated. Therefore, the aim of this paper will be to summarize available evidence of probiotic use in well-defined clinical indications of importance for pediatricians. Based on currently available evidence certain probiotic strains (Lactobacillus rhamnosus GG [LGG] and Saccharomyces boulardii) have proven effect in the treatment of acute gastroenteritis and prevention of antibiotic associated diarrhea. Furthermore, LGG was proven to be effective in prevention of nosocomial diarrhea and respiratory tract infection in day care centers. In conclusion, not all probiotic strains have same efficacy for all clinical indications, therefore, only strains with proven efficacy and safety should be recommended. PMID:29026729

Can Inferred Provenance and Its Visualisation Be Used to Detect Erroneous Annotation? A Case Study Using UniProtKB

PubMed Central

Bell, Michael J.; Collison, Matthew; Lord, Phillip

2013-01-01

A constant influx of new data poses a challenge in keeping the annotation in biological databases current. Most biological databases contain significant quantities of textual annotation, which often contains the richest source of knowledge. Many databases reuse existing knowledge; during the curation process annotations are often propagated between entries. However, this is often not made explicit. Therefore, it can be hard, potentially impossible, for a reader to identify where an annotation originated from. Within this work we attempt to identify annotation provenance and track its subsequent propagation. Specifically, we exploit annotation reuse within the UniProt Knowledgebase (UniProtKB), at the level of individual sentences. We describe a visualisation approach for the provenance and propagation of sentences in UniProtKB which enables a large-scale statistical analysis. Initially levels of sentence reuse within UniProtKB were analysed, showing that reuse is heavily prevalent, which enables the tracking of provenance and propagation. By analysing sentences throughout UniProtKB, a number of interesting propagation patterns were identified, covering over sentences. Over sentences remain in the database after they have been removed from the entries where they originally occurred. Analysing a subset of these sentences suggest that approximately are erroneous, whilst appear to be inconsistent. These results suggest that being able to visualise sentence propagation and provenance can aid in the determination of the accuracy and quality of textual annotation. Source code and supplementary data are available from the authors website at http://homepages.cs.ncl.ac.uk/m.j.bell1/sentence_analysis/. PMID:24143170

Discrimination of fine-grained sediment provenance using geochemical elements on the inner shelf of the Korean Strait (South Sea), Korea

NASA Astrophysics Data System (ADS)

Um, I. K.; Choi, M. S.

2017-12-01

The central South Sea mud (CSSM) is located between the Heuksan mud belt (HMB) in the Yellow Sea and Korea Strait shelf mud (KSSM) in the East Sea and developed along the eastward transport pathway in the South Sea. Major elements (Al, Fe, Mg, and Ti), trace elements (Li, Cs, Sc, and Rb), and rare earth elements (REEs) in the fine-grained sediments (<15 μm) of thirty-two surface sediment samples on the CSSM were analyzed to determine the fine-grained sediment provenance. The spatial distribution of the analyzed elements showed a clear separation of the western (W-CSSM) and eastern (E-CSSM) regions of the CSSM. Concentrations of Fe, Ti, Mg, Sc, and REEs were higher in the W-CSSM, whereas concentrations of Al, Cs, Li, and Rb were higher in the E-CSSM. The ratios of trace metals ((Cs+Sc)/Li and Rb/Li) can be successfully used as a provenance indicator in the study area but REEs compositions could not be used to track the provenance of fine-grained sediments because of a grain size effect. The mixing relationships of the provenance indicators showed that the fine-grained sediments of the CSSM comprise a mixture of the sediments discharged from the Seomjin River (SRS) and sediments eroded and transported from the Heuksan mud belt (HMBS) area by the Korean coastal current. Sediments originating from the HMB were deposited mostly in the W-CSSM, whereas those from the Seomjin River were deposited mostly in the E-CSSM

Provenance of sandstones in the Golconda terrane, north central Nevada

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jones, E.A.

1991-02-01

The upper Paleozoic Golconda terrane of north-central Nevada is a composite of several structurally bounded subterranes made of clastic, volcanic, and carbonate rocks. The clastic rocks provide important clues for the interpretation of the provenance and paleogeographic settings of the different lithologic assemblages found in these subterranes. Two petrographically distinct sandstones are identified in the Golconda terrane in the Osgood Mountains and the Hot springs Range of north-central Nevada. The sandstone of the Mississippian Farrel Canyon Formation, part of the Dry Hills subterrane, is characterized by quartzose and sedimentary and lithic-rich clasts with a small feldspar component. in contrast, themore » sandstone of the Permian Poverty Peak (II) subterrane is a silty quartzarenite with no lithic component, and a very limited feldspar component. The sandstone of the Farrel Canyon Formation is similar to nonvolcanic sandstones reported from elsewhere in the Golconda terrane. Modal data reflect a provenance of a recycled orogen and permit the interpretation that it could have been derived from the antler orogen as has been proposed for other sandstones of the golconda terrane. The sandstone of the Poverty Peak (II) subterrane is more mature than any of the other sandstones in either the Golconda terrane, the Antler overlap sequence, or the Antler foreland basin sequence. Modal data put the Poverty Peak (II) sandstone in the continental block provenance category. The distinct extrabasinal provenances represented in these different sandstones support the idea that the Golconda basin was made up of complex paleogeographic settings, which included multiple sources of extrabasinal sediment.« less

Seasonal growth in white pine seedlings from different provenances

Treesearch

Frank S., Jr. Santamour

1960-01-01

The Northeastern Forest Experiment Station, in cooperation with other experiment stations in the United States and Canada, began a range-wide provenance test of eastern white pine (Pinus strobus L.) in 1955. Seed was collected from 31 different locations in 17 states and 4 Canadian provinces. In most places collections were made from 10 trees at each location. The seed...

Dim prospects for earthquake prediction

NASA Astrophysics Data System (ADS)

Geller, Robert J.

I was misquoted by C. Lomnitz's [1998] Forum letter (Eos, August 4, 1998, p. 373), which said: [I wonder whether Sasha Gusev [1998] actually believes that branding earthquake prediction a ‘proven nonscience’ [Geller, 1997a] is a paradigm for others to copy.”Readers are invited to verify for themselves that neither “proven nonscience” norv any similar phrase was used by Geller [1997a].

Possibilities and limitations of using historic provenance tests to infer forest species growth responses to climate change

Treesearch

Laura P. Leites; Gerald E. Rehfeldt; Andrew P. Robinson; Nicholas L. Crookston; Barry Jaquish

2012-01-01

Under projected changes in global climate, the growth and survival of existing forests will depend on their ability to adjust physiologically in response to environmental change. Quantifying their capacity to adjust and whether the response is species- or population-specific is important to guide forest management strategies. New analyses of historic provenance tests...

Variation among northern red oak provenances in bark thickness:dbh ratios

Treesearch

Matthew S. Russell; Jeffrey O. Dawson

1995-01-01

Differences in bark thickness in relation to diameter at breast height were observed in a 30-32 year old Illinois planting of 32 provenances of northern red oak (Quercus rubra) from throughout its natural range. Bark thickness by itself is often a good indication of relative cambial insulation from fire. Fire resistance in trees can largely be...

Radial Growth of Nine Selected 18-Year-Old Baldcypress Provenances Under Prolonged Drought

Treesearch

P. Joy Young; Jim L. Chambers

2004-01-01

Coastal and bottomland restoration have prompted an interest in species that tolerate wetland and/or saline conditions. It has been suggested that provenance tests may be used to explore a species’ response to global climate change (Matyas 1994). Baldcypress, [Taxodium distichum (L.) Rich], a canopy dominant in the lower Atlantic and Gulf coast...

Drought tolerance and growth in populations of a wide-ranging tree species indicate climate change risks for the boreal north.

PubMed

Montwé, David; Isaac-Renton, Miriam; Hamann, Andreas; Spiecker, Heinrich

2016-02-01

Choosing drought-tolerant planting stock in reforestation programs may help adapt forests to climate change. To inform such reforestation strategies, we test lodgepole pine (Pinus contorta Doug. ex Loud. var latifolia Englm.) population response to drought and infer potential benefits of a northward transfer of seeds from drier, southern environments. The objective is addressed by combining dendroecological growth analysis with long-term genetic field trials. Over 500 trees originating from 23 populations across western North America were destructively sampled in three experimental sites in southern British Columbia, representing a climate warming scenario. Growth after 32 years from provenances transferred southward or northward over long distances was significantly lower than growth of local populations. All populations were affected by a severe natural drought event in 2002. The provenances from the most southern locations showed the highest drought tolerance but low productivity. Local provenances were productive and drought tolerant. Provenances from the boreal north showed lower productivity and less drought tolerance on southern test sites than all other sources, implying that maladaptation to drought may prevent boreal populations from taking full advantage of more favorable growing conditions under projected climate change. © 2015 John Wiley & Sons Ltd.

Rapid Elemental Analysis and Provenance Study of Blumea balsamifera DC Using Laser-Induced Breakdown Spectroscopy

PubMed Central

Liu, Xiaona; Zhang, Qiao; Wu, Zhisheng; Shi, Xinyuan; Zhao, Na; Qiao, Yanjiang

2015-01-01

Laser-induced breakdown spectroscopy (LIBS) was applied to perform a rapid elemental analysis and provenance study of Blumea balsamifera DC. Principal component analysis (PCA) and partial least squares discriminant analysis (PLS-DA) were implemented to exploit the multivariate nature of the LIBS data. Scores and loadings of computed principal components visually illustrated the differing spectral data. The PLS-DA algorithm showed good classification performance. The PLS-DA model using complete spectra as input variables had similar discrimination performance to using selected spectral lines as input variables. The down-selection of spectral lines was specifically focused on the major elements of B. balsamifera samples. Results indicated that LIBS could be used to rapidly analyze elements and to perform provenance study of B. balsamifera. PMID:25558999

Convergence and attractivity of memristor-based cellular neural networks with time delays.

PubMed

Qin, Sitian; Wang, Jun; Xue, Xiaoping

2015-03-01

This paper presents theoretical results on the convergence and attractivity of memristor-based cellular neural networks (MCNNs) with time delays. Based on a realistic memristor model, an MCNN is modeled using a differential inclusion. The essential boundedness of its global solutions is proven. The state of MCNNs is further proven to be convergent to a critical-point set located in saturated region of the activation function, when the initial state locates in a saturated region. It is shown that the state convergence time period is finite and can be quantitatively estimated using given parameters. Furthermore, the positive invariance and attractivity of state in non-saturated regions are also proven. The simulation results of several numerical examples are provided to substantiate the results. Copyright © 2014 Elsevier Ltd. All rights reserved.

Visualisation methods for large provenance collections in data-intensive collaborative platforms

NASA Astrophysics Data System (ADS)

Spinuso, Alessandro; Fligueira, Rosa; Atkinson, Malcolm; Gemuend, Andre

2016-04-01

This work investigates improving the methods of visually representing provenance information in the context of modern data-driven scientific research. It explores scenarios where data-intensive workflows systems are serving communities of researchers within collaborative environments, supporting the sharing of data and methods, and offering a variety of computation facilities, including HPC, HTC and Cloud. It focuses on the exploration of big-data visualization techniques aiming at producing comprehensive and interactive views on top of large and heterogeneous provenance data. The same approach is applicable to control-flow and data-flow workflows or to combinations of the two. This flexibility is achieved using the W3C-PROV recommendation as a reference model, especially its workflow oriented profiles such as D-PROV (Messier et al. 2013). Our implementation is based on the provenance records produced by the dispel4py data-intensive processing library (Filgueira et al. 2015). dispel4py is an open-source Python framework for describing abstract stream-based workflows for distributed data-intensive applications, developed during the VERCE project. dispel4py enables scientists to develop their scientific methods and applications on their laptop and then run them at scale on a wide range of e-Infrastructures (Cloud, Cluster, etc.) without making changes. Users can therefore focus on designing their workflows at an abstract level, describing actions, input and output streams, and how they are connected. The dispel4py system then maps these descriptions to the enactment platforms, such as MPI, Storm, multiprocessing. It provides a mechanism which allows users to determine the provenance information to be collected and to analyze it at runtime. For this work we consider alternative visualisation methods for provenance data, from infinite lists and localised interactive graphs, to radial-views. The latter technique has been positively explored in many fields, from text data visualisation to genomics and social networking analysis. Its adoption for provenance has been presented in literature (Borkin et al. 2013) in the context of parent-child relationships across processes, constructed from control-flow information. Computer graphics research has focused on the advantage of this radial distribution of interlinked information and on ways to improve the visual efficiency and tunability of such representations, like the Hierarchical Edge Bundles visualisation method, (Holten et al. 2006), which aims at reducing visual clutter of highly connected structures via the generation of bundles. Our approach explores the potential of the combination of these methods. It serves environments where the size of the provenance collection, coupled with the diversity of the infrastructures and the domain metadata, make the extrapolation of usage trends extremely challenging. Applications of such visualisation systems can engage groups of scientists, data providers and computational engineers, by serving visual snapshots that highlight relationships between an item and its connected processes. We will present examples of comprehensive views on the distribution of processing and data transfers during a workflow's execution in HPC, as well as cross workflows interactions and internal dynamics. The latter in the context of faceted searches on domain metadata values-range. These are obtained from the analysis of real provenance data generated by the processing of seismic traces performed through the VERCE platform.

Automated metadata, provenance cataloging and navigable interfaces: ensuring the usefulness of extreme-scale data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schissel, David; Greenwald, Martin

The MPO (Metadata, Provenance, Ontology) Project successfully addressed the goal of improving the usefulness and traceability of scientific data by building a system that could capture and display all steps in the process of creating, analyzing and disseminating that data. Throughout history, scientists have generated handwritten logbooks to keep track of data, their hypotheses, assumptions, experimental setup, and computational processes as well as reflections on observations and issues encountered. Over the last several decades, with the growth of personal computers, handheld devices, and the World Wide Web, the handwritten logbook has begun to be replaced by electronic logbooks. This transitionmore » has brought increased capability such as supporting multi-media, hypertext, and fast searching. However, content creation and metadata (a set of data that describes and gives information about other data) capturing has for the most part remained a manual activity just as it was with handwritten logbooks. This has led to a fragmentation of data, processing, and annotation that has only accelerated as scientific workflows continue to increase in complexity. From a scientific perspective, it is very important to be able to understand the lineage of any piece of data: who, what, when, how, and why. This is typically referred to as data provenance. The fragmentation discussed previously often means that data provenance is lost. As scientific workflows move to powerful computers and become more complex, the ability to track all of the steps involved in creating a piece of data become even more difficult. It was the goal of the MPO (Metadata, Provenance, Ontology) Project to create a system (the MPO System) that allows for automatic provenance and metadata capturing in such a way to allow easy searching and browsing. This goal needed to be accomplished in a general way so that it may be used across a broad range of scientific domains, yet allow the addition of vocabulary (Ontology) that is domain specific as is required for intelligent searching and browsing in the scientific context. Through the creation and deployment of the MPO system, the goals of the project were achieved. An enhanced metadata, provenance, and ontology storage system was created. This was combined with innovative methodologies for navigating and exploring these data using a web browser for both experimental and simulation-based scientific research. In addition, a system to allow scientists to instrument their existing workflows for automatic metadata and provenance is part of the MPO system. In that way, a scientist can continue to use their existing methodology yet easily document their work. Workflows and data provenance can be displayed either graphically or in an electronic notebook format and support advanced search features including via ontology. The MPO system was successfully used in both Climate and Magnetic Fusion Energy Research. The software for the MPO system is located at https://github.com/MPO-Group/MPO and is open source distributed under the Revised BSD License. A demonstration site of the MPO system is open to the public and is available at https://mpo.psfc.mit.edu/. A Docker container release of the command line client is available for public download using the command docker pull jcwright/mpo-cli at https://hub.docker.com/r/jcwright/mpo-cli.« less

Modal Analysis Using the Singular Value Decomposition and Rational Fraction Polynomials

DTIC Science & Technology

2017-04-06

information is estimated to average 1 hour per response, including the time for reviewing instructions, searching existing data sources, gathering and...results. The programs are designed for experimental datasets with multiple drive and response points and have proven effective even for systems with... designed for experimental datasets with multiple drive and response points and have proven effective even for systems with numerous closely-spaced

Obsidian provenance research in the Americas.

PubMed

Glascock, Michael D

2002-08-01

The characterization of archaeological materials to support provenance research has grown rapidly over the past few decades. Volcanic obsidian has several unique properties that make it the ideal archaeological material for studying prehistoric trade and exchange. This Account describes our laboratory's development of a systematic methodology for the characterization of obsidian sources and artifacts from Mesoamerica and other regions of North and South America in support of archaeological research.

Scotch pine for the northern Great Plains

Treesearch

Richard A. Cunningham

1973-01-01

A provenance test of 49 origins of Scotch pine (Pinus sylvestris L.) from eastern Europe, Russia, and Siberia was established at three locations in North Dakota and one in Nebraska. After 10 years (7 in Nebraska), trees from 50º to 55º latitude and 20º to 40º longitude survived best, were taller, and had greener winter foliage. Several provenances...

Comparative genetic responses to climate in the varieties of Pinus ponderosa and Pseudotsuga menziesii: clines in growth potential

Treesearch

Gerald E. Rehfeldt; Laura P. Leites; J. Bradley St Clair; Barry C. Jaquish; Cuauhtemoc Saenz-Romero; Javier Lopez-Upton; Dennis G. Joyce

2014-01-01

Height growth data were assembled from 10 Pinus ponderosa and 17 Pseudotsuga menziesii provenance tests. Data from the disparate studies were scaled according to climate similarities of the provenances to provide single datasets for 781 P. ponderosa and 1193 P. menziesii populations. Mixed effects models were used for two sub-specific varieties of each species to...

Survival and growth of white ash families and provenances 15 years after establishment in West Virginia

Treesearch

Thomas M. Schuler

1994-01-01

The survival, growth, and stem form of 45 white ash (Fraxinus americana L.) families nested within 22 provenances were evaluated 15 years after establishment in north central West Virginia. Geographic family origins encompassed a wide area in the eastern and central United States, including locations from Maine in the North to Mississippi in the South to Nebraska in...

Sap sugar parameters of silver maple provenances and clones grown on upland and bottomland sites

Treesearch

J. J. Zaczek; A. D. Carver; K. W. J. Williard; J. K. Buchheit; J. E. Preece; J. C. Mangun

2003-01-01

Sap sugar concentration (SSC), sap volume, and stem diameter were measured for 49 different silver maple clones representing a range-wide collection of 13 provenances within replicated upland and bottomland plantations in southern Illinois during the winter of 2001. For comparison, 42 sugar maple trees were sampled in a local sugarbush. Silver maple SSC averaged 1.51...

Performance of northern white-cedar in central Illinois

Treesearch

J.J. Jokela; C.L. Cyr

1977-01-01

Growth and survival of 20 provenances of northern white-cedar in the nursery and to age 12 in 3 test plantings in east central Illinois were examined. Survival at age 12 exceeded 95 percent in all tests. Total height differed significantly among provenances at age 4 in the nursery and at greater ages in all tests except after the first and second growing seasons...

Influence of tree provenance on biogenic VOC emissions of Scots pine (Pinus sylvestris) stumps

NASA Astrophysics Data System (ADS)

Kivimäenpää, Minna; Magsarjav, Narantsetseg; Ghimire, Rajendra; Markkanen, Juha-Matti; Heijari, Juha; Vuorinen, Martti; Holopainen, Jarmo K.

2012-12-01

Resin-storing plant species such as conifer trees can release substantial amounts of volatile organic compounds (VOCs) into the atmosphere under stress circumstances that cause resin flow. Wounding can be induced by animals, pathogens, wind or direct mechanical damage e.g. during harvesting. In atmospheric modelling of biogenic VOCs, actively growing vegetation has been mostly considered as the source of emissions. Root systems and stumps of resin-storing conifer trees could constitute a significant store of resin after tree cutting. Therefore, we assessed the VOC emission rates from the cut surface of Scots pine stumps and estimated the average emission rates for an area with a density of 2000 stumps per ha. The experiment was conducted with trees of one Estonian and three Finnish Scots pine provenances covering a 1200 km gradient at a common garden established in central Finland in 1991. VOC emissions were dominated by monoterpenes and less than 0.1% of the total emission was sesquiterpenes. α-Pinene (7-92% of the total emissions) and 3-carene (0-76% of the total emissions) were the dominant monoterpenes. Proportions of α-pinene and camphene were significantly lower and proportions of 3-carene, sabinene, γ-terpinene and terpinolene higher in the southernmost Saaremaa provenance compared to the other provenances. Total terpene emission rates (standardised to +20 °C) from stumps varied from 27 to 1582 mg h-1 m-2 when measured within 2-3 h after tree cutting. Emission rates decreased rapidly to between 2 and 79 mg h-1 m-2 at 50 days after cutting. The estimated daily terpene emission rates on a hectare basis from freshly cut stumps at a cut tree density of 2000 per ha varied depending on provenance. Estimated emission ranges were 100-710 g ha-1 d-1 and 137-970 g ha-1 d-1 in 40 and in 60 year-old forest stands, respectively. Our result suggests that emission directly from stump surfaces could be a significant source of monoterpene emissions for a few weeks after logging in a Scots pine stand, but provenance properties strongly affect resin flow from root to stump surface.

Elucidating tectonic events and processes from variably tectonized conglomerate clast detrital geochronology: examples from the Hongliuhe Formation in the southern Central Asian Orogenic Belt, NW China

NASA Astrophysics Data System (ADS)

Cleven, Nathan; Lin, Shoufa; Davis, Donald; Xiao, Wenjiao; Guilmette, Carl

2017-04-01

This work expands upon detrital zircon geochronology with a sampling and analysis strategy dating granitoid conglomerate clasts that exhibit differing degrees of internal ductile deformation. As deformation textures within clastic material reflect the variation and history of tectonization in the source region of a deposit, we outline a dating methodology that can provide details of the provenance's tectonomagmatic history from deformation-relative age distributions. The method involves bulk samples of solely granitoid clasts, as they are representative of the magmatic framework within the provenance. The clasts are classified and sorted into three subsets: undeformed, slightly deformed, and deformed. LA-ICPMS U-Pb geochronology is performed on zircon separates of each subset. Our case study, involving the Permian Hongliuhe Formation in the southern Central Asian Orogenic Belt, analyzes each of the three clast subsets, as well as sandstone detrital samples, at three stratigraphic levels to yield a profile of the unroofed provenance. The age spectra of the clast samples exhibit different, wider distributions than sandstone samples, considered an effect of proximity to the respective provenance. Comparisons of clast data to sandstone data, as well as comparisons between stratigraphic levels, yield indications of key tectonic processes, in addition to the typical characteristics provided by detrital geochronology. The clast data indicates a minimal lag time, implying rapid exhumation rates, whereas sandstone data alone would indicate a 90 m.y. lag time. Early Paleozoic arc building episodes appear as Ordovician peaks in sandstone data, and Silurian-Devonian peaks in clast data, indicating a younging of magmatism towards the proximal provenance. A magmatic hiatus starts in the Devonian, correlating with the latest age of deformed clasts, interpreted as timing of collisional tectonics. Provenance interpretation using the correlations seen between the clast and sandstone data proves to be more detailed and more robust than that determined from sandstone samples alone. The variably tectonized clast detrital geochronology method offers a regional reconnaissance tool that can address the practical limits of studying regional granitoid distributions.

Enabling data-driven provenance in NetCDF, via OGC WPS operations. Climate Analysis services use case.

NASA Astrophysics Data System (ADS)

Mihajlovski, A.; Spinuso, A.; Plieger, M.; Som de Cerff, W.

2016-12-01

Modern Climate analysis platforms provide generic and standardized ways of accessing data and processing services. These are typically supported by a wide range of OGC formats and interfaces. However, the problem of instrumentally tracing the lineage of the transformations occurring on a dataset and its provenance remains an open challenge. It requires standard-driven and interoperable solutions to facilitate understanding, sharing of self-describing data products, fostering collaboration among peers. The CLIPC portal provided us real use case, where the need of an instrumented provenance management is fundamental. CLIPC provides a single point of access for scientific information on climate change. The data about the physical environment which is used to inform climate change policy and adaptation measures comes from several categories: satellite measurements, terrestrial observing systems, model projections and simulations and from re-analyses. This is made possible through the Copernicus Earth Observation Programme for Europe. With a backbone combining WPS and OPeNDAP services, CLIPC has two themes: 1. Harmonized access to climate datasets derived from models, observations and re-analyses 2. A climate impact tool kit to evaluate, rank and aggregate indicators The climate impact tool kit is realised with the orchestration of a number of WPS that ingest, normalize and combine NetCDF files. The WPS allowing this specific computation are hosted by the climate4impact portal, which is a more generic climate data-access and processing service. In this context, guaranteeing validation and reproducibility of results, is a clearly stated requirement to improve the quality of the results obtained by the combined analysis Two core contributions made, are the enabling of a provenance wrapper around WPS services and the enabling of provenance tracing within the NetCDF format, which adopts and extends the W3C's PROV model. To disseminate indicator data and create transformed data products, a standardized provenance, metadata and processing infrastructure is researched for CLIPC. These efforts will lead towards the provision of tools for further web service processing development and optimisation, opening up possibilities to scale and administer abstract users and data driven workflows.

Provenance evolution in the northern South China Sea and its implication of paleo-drainage systems from Eocene to Miocene

NASA Astrophysics Data System (ADS)

Cui, Y.; Shao, L.; Qiao, P.

2017-12-01

Geochemistry analysis and detrital zircon U-Pb geochronology aim to fully investigate the "source to sink" patterns of northern South China Sea (SCS) from Eocene to Miocene. Evolutional history of the surrounding drainage system has been highly focused on, in comparison to sedimentary characteristics of the SCS basins. Rapid local provenances were prevailed while large-scale fluvial transport remained to evolve during Eocene. Since early Oligocene, sediments from the South China were more abundantly delivered to the northeastern Pearl River Mouth Basin in addition to Dongsha volcanism supplement. Aside from intrabasinal provenances, long-distance transport started to play significant role in Zhu1 Depression, possibly reaching western and southern Baiyun Sag, partially. Western Qiongdongnan Basin might accept sediments from central Vietnam with its eastern area more affected from Hainan Island and Southern Uplift. In the late Oligocene, due to drastic sea-level changes and rapid exhumation, mafic to altramafic sediments were transported in abundance to Central Depression from Kontum Massif, while multiple provenances casted integrated influence on eastern sedimentary sequences. Southern Baiyun Sag was also affected by an increased supplement from the west Shenhu Uplift or even central Vietnam. Overall pattern did not change greatly since early Miocene, but long-distance transport has become dominant in the northern SCS. Under controlled by regional tectonic cycles, Pearl River gradually evolved into the present scale and exerted its influence on basinal provenances by several stages. Zhu1 Depression was partially delivered sediments from its tributaries in early Oligocene while northern Zhu2 Depression has not been provided abundant materials until late Oligocene. Meanwhile, although detailed transportation routine remains uncertain and controversial, an impressive paleo-channel spanning the whole Qiongdongnan Basin was presumed to supply huge amount of mafic to ultramafic sediments from central Vietnam drainage systems to the further eastern regions, which even reaching Baiyun Sag since the late Oligocene or even earlier. This unique channel was later likely to be replaced by the adjacent provenance of Hainan Island after early Miocene.

Climate-related Indicators and Data Provenance: Evaluating Coupled Boundary Objects for Science, Innovation, and Decision-Making

NASA Astrophysics Data System (ADS)

Wiggins, A.; Young, A.; Brody, C.; Gerst, M.; Kenney, M. A.; Lamoureux, A.; Rice, A.; Wolfinger, F.

2015-12-01

Boundary object theory focuses on the role of artifacts, such as indicator images, in translation and communication across the boundaries of social groups. We use this framework for understanding how data can communicate across contexts to answer the question: Can coupling climate-related indicators with data provenance support scientific innovation and science translation? To address this question we conducted a study to understand the features and capabilities necessary for indicators and data provenance for scientific uses, using the recently online-released U.S. Global Change Research Program (USGCRP) Indicators and Global Change Information System (GCIS) as linked boundary objects. We conducted semi-structured interviews with professional researchers in which we asked the researchers to explore and describe what they observed that was useful or frustrating for a subset of the USGCRP Indicators, related GCIS content, and other similar indicator and metadata websites. Participants found these sites' navigation and the labeling and description of their assets frustrating and confusing, but were able to clearly articulate the metadata and provenance information they needed to both understand and trust the indicators. In addition to identifying desired features that are likely to be specific to this audience (e.g., references or citations for indicators), scientists wanted clear, easier-to-access provenance information of the type usually recommended for documenting research data. Notably, they felt the information would be best presented in a fashion accessible to a broader audience, as those with more technical expertise should be able to infer additional contextual details given the provenance information that they had identified as key. Such results are useful for the improvement of indicator systems, such as the prototype released by USGCRP. We note in particular that the consistency of responses across the multi-disciplinary sample, which included scholars in astrophysics, geography, marine biology, and conservation ecology, suggests that data and indicators have strong potential to serve as boundary objects to bridge diverse spaces, and may provide a useful point of reference for establishing interdisciplinary collaboration.

Making Sense of 'Big Data' in Provenance Studies

NASA Astrophysics Data System (ADS)

Vermeesch, P.

2014-12-01

Huge online databases can be 'mined' to reveal previously hidden trends and relationships in society. One could argue that sedimentary geology has entered a similar era of 'Big Data', as modern provenance studies routinely apply multiple proxies to dozens of samples. Just like the Internet, sedimentary geology now requires specialised statistical tools to interpret such large datasets. These can be organised on three levels of progressively higher order:A single sample: The most effective way to reveal the provenance information contained in a representative sample of detrital zircon U-Pb ages are probability density estimators such as histograms and kernel density estimates. The widely popular 'probability density plots' implemented in IsoPlot and AgeDisplay compound analytical uncertainty with geological scatter and are therefore invalid.Several samples: Multi-panel diagrams comprising many detrital age distributions or compositional pie charts quickly become unwieldy and uninterpretable. For example, if there are N samples in a study, then the number of pairwise comparisons between samples increases quadratically as N(N-1)/2. This is simply too much information for the human eye to process. To solve this problem, it is necessary to (a) express the 'distance' between two samples as a simple scalar and (b) combine all N(N-1)/2 such values in a single two-dimensional 'map', grouping similar and pulling apart dissimilar samples. This can be easily achieved using simple statistics-based dissimilarity measures and a standard statistical method called Multidimensional Scaling (MDS).Several methods: Suppose that we use four provenance proxies: bulk petrography, chemistry, heavy minerals and detrital geochronology. This will result in four MDS maps, each of which likely show slightly different trends and patterns. To deal with such cases, it may be useful to use a related technique called 'three way multidimensional scaling'. This results in two graphical outputs: an MDS map, and a map with 'weights' showing to what extent the different provenance proxies influence the horizontal and vertical axis of the MDS map. Thus, detrital data can not only inform the user about the provenance of sediments, but also about the causal relationships between the mineralogy, geochronology and chemistry.

ECG findings in comparison to cardiovascular MR imaging in viral myocarditis.

PubMed

Deluigi, Claudia C; Ong, Peter; Hill, Stephan; Wagner, Anja; Kispert, Eva; Klingel, Karin; Kandolf, Reinhard; Sechtem, Udo; Mahrholdt, Heiko

2013-04-30

We sought (1) to assess prevalence and type of ECG abnormalities in patients with biopsy proven myocarditis and signs of myocardial damage indicated by LGE, and (2) to evaluate whether ECG abnormalities are related to the pattern of myocardial damage. Prevalence and type of ECG abnormalities in patients presenting biopsy proven myocarditis, as well as any relation between ECG abnormalities and the in vivo pattern of myocardial damage are unknown. Eighty-four consecutive patients fulfilled the following criteria: (1) newly diagnosed biopsy proven viral myocarditis, and (2) non-ischemic LGE, and (3) standard 12-lead-ECG upon admission. Sixty-five patients with biopsy proven myocarditis had abnormal ECGs upon admission (77%). In this group, ST-abnormalities were detected most frequently (69%), followed by bundle-branch-block in 26%, and Q-waves in 8%. Atrial fibrillation was present in 6%, and AV-Block in two patients. In patients with septal LGE ST-abnormalities were more frequently located in anterolateral leads compared to patients with lateral LGE, in whom ST-abnormalities were most frequently observed in inferolateral leads. Bundle-branch-block occurred more often in patients with septal LGE (11/17). Four of five patients with Q-waves had severe and almost transmural LGE in the lateral wall. ECG abnormalities can be found in most patients with biopsy proven viral myocarditis at initial presentation. However, similar to suspected acute myocardial infarction, a normal ECG does not rule out myocarditis. ECG findings are related to the amount and area of damage as indicated by LGE, which confirms the important clinical role of ECG. Copyright © 2011 Elsevier Ireland Ltd. All rights reserved.

Climatic control of bud burst in young seedlings of nine provenances of Norway spruce.

PubMed

Søgaard, Gunnhild; Johnsen, Oystein; Nilsen, Jarle; Junttila, Olavi

2008-02-01

Detailed knowledge of temperature effects on the timing of dormancy development and bud burst will help evaluate the impacts of climate change on forest trees. We tested the effects of temperature applied during short-day treatment, duration of short-day treatment, duration of chilling and light regime applied during forcing on the timing of bud burst in 1- and 2-year-old seedlings of nine provenances of Norway spruce (Picea abies (L.) Karst.). High temperature during dormancy induction, little or no chilling and low temperature during forcing all delayed dormancy release but did not prevent bud burst or growth onset provided the seedlings were forced under long-day conditions. Without chilling, bud burst occurred in about 20% of seedlings kept in short days at 12 degrees C, indicating that young Norway spruce seedlings do not exhibit true bud dormancy. Chilling hastened bud burst and removed the long photoperiod requirement, but the effect of high temperature applied during dormancy induction was observed even after prolonged chilling. Extension of the short-day treatment from 4 to 8 or 12 weeks hastened bud burst. The effect of treatments applied during dormancy development was larger than that of provenance; in some cases no provenance effect was detected, but in 1-year-old seedlings, time to bud burst decreased linearly with increasing latitude of origin. Differences among provenances were complicated by different responses of some origins to light conditions under long-day forcing. In conclusion, timing of bud burst in Norway spruce seedlings is significantly affected by temperature during bud set, and these effects are modified by chilling and environmental conditions during forcing.

Nonalbumin proteinuria predominates in biopsy-proven tenofovir nephrotoxicity.

PubMed

Sise, Meghan E; Hirsch, Jamie S; Canetta, Pietro A; Herlitz, Leal; Mohan, Sumit

2015-05-15

Tenofovir disoproxil fumarate (TDF) nephrotoxicity is characterized by proximal renal tubular injury and dysmorphic mitochondria resulting in proteinuria, orthoglycemic glycosuria, and other markers of proximal tubular dysfunction. The objective of this study was to determine the pattern of proteinuria in patients with biopsy-proven TDF nephrotoxicity. Retrospective chart review. Patients with biopsy-proven TDF nephrotoxicity were identified and their medical charts and biopsy reports were reviewed. Comparison was made with HIV-infected patients not on TDF who underwent kidney biopsy. We identified 43 biopsy-proven cases of TDF nephrotoxicity; mean age 54.7 ± 0.4 years, 53% men, 42% whites. Thirty-seven cases reported proteinuria by dipstick of which only 60% had at least 2+ proteinuria. Twenty-seven patients had urine protein quantified by either 24-h collection or spot urine protein-to-creatinine ratio; median proteinuria was 1742 mg/day [interquartile range (IQR) 1200-2000 mg] and 1667 mg/g creatinine (IQR 851-1967 mg/g), respectively. Ten patients had concurrent urinary albumin measured, with a median 236 mg/g creatinine (IQR 137-343 mg/g). The mean urine albumin-to-urine protein ratio (uAPR) was 0.17 (IQR 0.14-0.19), confirming that TDF nephrotoxicity is primarily associated with nonalbumin proteinuria. Control cases had a uAPR of 0.65 (IQR 0.55-0.79) P < 0.001. Histopathology showed the predominance of proximal tubular injury with characteristic mitochondrial abnormalities. In the largest published cohort of patients with biopsy-proven TDF nephrotoxicity, we show that low uAPR is a reliable feature of this disease. Because of the predominance of nonalbumin proteinuria, dipstick urinalysis may be unreliable in TDF nephrotoxicity.

A case study on the application of isotope ratio mass spectrometry (IRMS) in determining the provenance of a rock used in an alleged nickel switching incident.

PubMed

Roelofse, F; Horstmann, U E

2008-01-15

The application of isotope ratio mass spectrometry (IRMS) in forensic science to establish the provenance of a range of questioned substances including soils, drugs, explosives, currency, ivory and rhino horn has been widely documented. The present study wishes to highlight the applicability of IRMS and specifically stable carbon IRMS in determining the provenance of a carbonate rock that was switched for nickel metal exported from South Africa to Israel. The technique employed effectively argued against a South African origin for the rock whilst simultaneously supporting an Israeli origin, enabling investigators to focus their attention accordingly. The study represents the first documented instance known to the authors where IRMS has been employed in the forensic geo-location of a rock.

Tracking and Establishing Provenance of Earth Science Datasets: A NASA-based Example

NASA Technical Reports Server (NTRS)

Ramapriyan, Hampapuram K.; Goldstein, Justin C.; Hua, Hook; Wolfe, Robert E.

2016-01-01

Information quality is of paramount importance to science. Accurate, scientifically vetted and statistically meaningful and, ideally, reproducible information engenders scientific trust and research opportunities. Therefore, so-called Highly Influential Scientific Assessments (HISA) such as the U.S. Third National Climate Assessment undergo a very rigorous process to ensure transparency and credibility. As an activity to support the transparency of such reports, the U.S. Global Change Research Program has developed the Global Change Information System (GCIS). Specifically related to the transparency of NCA3, a recent activity was carried out to trace the provenance as completely as possible for all figures in the NCA3 report that predominantly used NASA data. This paper discusses lessons learned from this activity that trace the provenance of NASA figures in a major HISA-class pdf report.

Antimicrobial-Coated Granules for Disinfecting Water

NASA Technical Reports Server (NTRS)

Akse, James R.; Holtsnider, John T.; Kliestik, Helen

2011-01-01

Methods of preparing antimicrobialcoated granules for disinfecting flowing potable water have been developed. Like the methods reported in the immediately preceding article, these methods involve chemical preparation of substrate surfaces (in this case, the surfaces of granules) to enable attachment of antimicrobial molecules to the surfaces via covalent bonds. A variety of granular materials have been coated with a variety of antimicrobial agents that include antibiotics, bacteriocins, enzymes, bactericides, and fungicides. When employed in packed beds in flowing water, these antimicrobial-coated granules have been proven effective against gram-positive bacteria, gram-negative bacteria, fungi, and viruses. Composite beds, consisting of multiple layers containing different granular antimicrobial media, have proven particularly effective against a broad spectrum of microorganisms. These media have also proven effective in enhancing or potentiating the biocidal effects of in-line iodinated resins and of very low levels of dissolved elemental iodine.

Diabetes mellitus and the skin*

PubMed Central

Mendes, Adriana Lucia; Miot, Helio Amante; Haddad Junior, Vidal

2017-01-01

Several dermatoses are routinely associated with diabetes mellitus, especially in patients with chronic disease. This relationship can be easily proven in some skin disorders, but it is not so clear in others. Dermatoses such necrobiosis lipoidica, granuloma annulare, acanthosis nigricans and others are discussed in this text, with an emphasis on proven link with the diabetes or not, disease identification and treatment strategy used to control those dermatoses and diabetes. PMID:28225950

Variation in pin knot frequency in black walnut lumber cut from a small provenance/progeny test

Treesearch

Peter Y. S. Chen; Robert E. Bodkin; J. W. Van Sambeek

1995-01-01

This small study examined the frequency of knots (> 1 growth ring), pin knots (latent or suppressed buds), and pin knot clusters in 414 black walnut (Juglans nigra L.) lumber from 42 logs. 18 to 21 cm dbh, cut from a 14-year-old provenance/progeny test. Two boards from opposite sides of each log were analyzed for number of knots, pin knots, and...

Establishing a range-wide provenance test in valley oak (Quercus lobata Née) at two California sites

Treesearch

Annette Delfino-Mix; Jessica W. Wright; Paul F. Gugger; Christina Liang; Victoria L. Sork

2015-01-01

We present the methods used to establish a provenance test in valley oak, Quercus lobata. Nearly 11,000 acorns were planted and 88 percent of those germinated. The resulting seedlings were measured after 1 and 2 years of growth, and were outplanted in the field in the winter of 2014-2015. This test represents a long-term resource for both research...

Provenance study through analysis of microstructural characteristics using an optical microscope and scanning electron microscopy for Goryeo celadon excavated from the seabed.

PubMed

Min-su, Han

2013-08-01

This paper aims at identifying the provenance of Goryeo celadons by understanding its microstructural characteristics, such as particles, blisters, forms and amount of pores, and the presence of crystal formation, bodies, and glazes and its boundary, using an optical microscope and scanning electron microscopy (SEM). The analysis of the reproduced samples shows that the glazed layer of the sherd fired at higher temperatures has lower viscosity and therefore it encourages the blisters to be combined together and the layer to become more transparent. In addition, the result showed that the vitrification and melting process of clay minerals such as feldspars and quartzs on the bodies was accelerated for those samples. To factor such characteristics of the microstructure and apply it to the sherds, the samples could be divided into six categories based on status, such as small particles with many small pores or mainly large and small circular pores in the bodies, only a limited number of varied sized blisters in the glazes, and a few blisters and needle-shaped crystals on the boundary surface. In conclusion, the analysis of the microstructural characteristics using an optical microscope and SEM have proven to be useful as a categorizing reference factor in a provenance study on Goryeo celadons.

Strontium isotopes in otoliths of a non-migratory fish (slimy sculpin): Implications for provenance studies

USGS Publications Warehouse

Brennan, Sean R.; Fernandez, Diego P.; Zimmerman, Christian E.; Cerling, Thure E.; Brown, Randy J.; Wooller, Matthew J.

2015-01-01

Heterogeneity in 87Sr/86Sr ratios of river-dissolved strontium (Sr) across geologically diverse environments provides a useful tool for investigating provenance, connectivity and movement patterns of various organisms and materials. Evaluation of site-specific 87Sr/86Sr temporal variability throughout study regions is a prerequisite for provenance research, but the dynamics driving temporal variability are generally system-dependent and not accurately predictable. We used the time-keeping properties of otoliths from non-migratory slimy sculpin (Cottus cognatus) to evaluate multi-scale 87Sr/86Sr temporal variability of river waters throughout the Nushagak River, a large (34,700 km2) remote watershed in Alaska, USA. Slimy sculpin otoliths incorporated site-specific temporal variation at sub-annual resolution and were able to record on the order of 0.0001 changes in the 87Sr/86Sr ratio. 87Sr/86Sr profiles of slimy sculpin collected in tributaries and main-stem channels of the upper watershed indicated that these regions were temporally stable, whereas the Lower Nushagak River exhibited some spatio-teporal variability. This study illustrates how the behavioral ecology of a non-migratory organism can be used to evaluate sub-annual 87Sr/86Sr temporal variability and has broad implications for provenance studies employing this tracer.

Geochemistry of loess-paleosol sediments of Kashmir Valley, India: Provenance and weathering

NASA Astrophysics Data System (ADS)

Ahmad, Ishtiaq; Chandra, Rakesh

2013-04-01

Middle to Late Pleistocene loess-paleosol sediments of Kashmir Valley, India, were analyzed for major, trace and REE elements in order to determine their chemical composition, provenance and intensity of palaeo-weathering of the source rocks. These sediments are generally enriched with Fe2O3, MgO, MnO, TiO2, Y, Ni, Cu, Zn, Th, U, Sc, V and Co while contents of SiO2, K2O, Na2O, P2O5, Sr, Nb and Hf are lower than the UCC. Chondrite normalized REE patterns are characterized by moderate enrichment of LREEs, relatively flat HREE pattern (GdCN/YbCN = 1.93-2.31) and lack of prominent negative Eu anomaly (Eu/Eu* = 0.73-1.01, average = 0.81). PAAS normalized REE are characterized by slightly higher LREE, depleted HREE and positive Eu anomaly. Various provenance discrimination diagrams reveal that the Kashmir Loess-Paleosol sediments are derived from the mixed source rocks suggesting large provenance with variable geological settings, which apparently have undergone weak to moderate recycling processes. Weathering indices such as CIA, CIW and PIA values (71.87, 83.83 and 80.57 respectively) and A-CN-K diagram imply weak to moderate weathering of the source material.

Climate Data Analytics Workflow Management

NASA Astrophysics Data System (ADS)

Zhang, J.; Lee, S.; Pan, L.; Mattmann, C. A.; Lee, T. J.

2016-12-01

In this project we aim to pave a novel path to create a sustainable building block toward Earth science big data analytics and knowledge sharing. Closely studying how Earth scientists conduct data analytics research in their daily work, we have developed a provenance model to record their activities, and to develop a technology to automatically generate workflows for scientists from the provenance. On top of it, we have built the prototype of a data-centric provenance repository, and establish a PDSW (People, Data, Service, Workflow) knowledge network to support workflow recommendation. To ensure the scalability and performance of the expected recommendation system, we have leveraged the Apache OODT system technology. The community-approved, metrics-based performance evaluation web-service will allow a user to select a metric from the list of several community-approved metrics and to evaluate model performance using the metric as well as the reference dataset. This service will facilitate the use of reference datasets that are generated in support of the model-data intercomparison projects such as Obs4MIPs and Ana4MIPs. The data-centric repository infrastructure will allow us to catch richer provenance to further facilitate knowledge sharing and scientific collaboration in the Earth science community. This project is part of Apache incubator CMDA project.

Spatial and Temporal Patterns of IRD Provenance in Glacial North Atlantic Sediments

NASA Astrophysics Data System (ADS)

Hemming, S. R.; Grousset, F. E.; Roy, M.; Julien, E.

2004-05-01

A full picture of ocean-atmosphere-ice sheet interactions awaits a thorough assessment of the array of different types of IRD layers with observations as well as models. Factors that must be considered in the observational studies are provenance (including geographic region of origin and whether icebergs or sea ice was the transporting agent), flux, relationship to sedimentological patterns such as grain size variations, and lateral sediment redistribution on the seafloor. We focus here on the provenance observations and their implications during the intervals of Heinrich layers H3 through H2, approximately 31 to 20 kyr. During the last glacial interval and prior to H3 (ca. 60-31 kyr), ice sheets had not achieved their maximum positions, and the abundance of IRD in marine sediments was generally lower as evidenced by standard measures such as %IRD and number of lithic grains per gram. H3 appears to be related to a modest IRD flux and it has been inferred to be a low foraminifera zone more than and IRD event. The map pattern of provenance variation within the H3 interval appears to be clearly relatable to surface current patterns and a significant portion of the continental derived detritus in eastern North Atlantic cores must have a European and/or Iceland+Greenland origin. In eastern Atlantic core VM28-82, the provenance varies abruptly across the low foraminifera interval of H3. In the Labrador Sea H3 has a composition like those of H1, H2, H4 and H5, suggesting a Hudson Strait source. Accordingly, the evidence appears to favor multiple sources of detritus (none of which overwhelmed the sediment load in the IRD belt) with a depositional pattern that is consistent with known surface currents. H1, H2, H4 and H5 can be traced far across the Atlantic to near Britain and Iberia based on the overwhelming Hudson Strait provenance. A difficulty in assessing geographical variations in the precursory intervals of Heinrich events is the rapid temporal variation in composition combined with the generally low resolution sampling. Hornblende 40Ar/39Ar ages within H2 cluster at 1.8 Ga (~75%), with most other grains being older. Below H2 in cores from Orphan Knoll (GGC31), off Newfoundland (VM23-14), in the Heinrich layer thickness maximum (SU90-11) the ages are much more scattered. Although more data are needed to make a firm conclusion, it appears that the interval just below the Hudson Strait provenance has a large Paleozoic source and just below that appears to be a mixture of Cenozoic (Icelandic hot spot) and ancient (Greenland?) grains. These observations are consistent with published petrological and Nd isotope evidence in the precursory interval of H2. Published evidence indicates a contrast between the precursory intervals of H2 and H4, consistent with the glaciers' not being at their maximum positions until after H3. It is expected that the precursory interval in eastern North Atlantic sources might be composed of largely different sources, similar to the implied provenance from the H3 map pattern.

Provenance Data in Social Media

DTIC Science & Technology

2013-04-01

B A R B I E R • F E N G • G U N D E C H A • L I U P R O...least h -hops (a positive integer constant) away from terminals. For user B , the Provenance Data Framework proposed in Section 4.1, accurately identifies...Anderson, R. May, and B . Anderson. Infectious Diseases of Humans: Dynamics and Control, volume 28. Wiley Online Library, 1992. 31, 32 [7] G. Barbier and H

Suggestions for the New Social Entrepreneurship Initiative: Focus on Building a Body of Research-Proven Programs, Shown to Produce Major Gains in Education, Poverty Reduction, Crime Prevention, and Other Areas

ERIC Educational Resources Information Center

Coalition for Evidence-Based Policy, 2009

2009-01-01

This paper outlines a possible approach to implementing the Social Entrepreneurship initiative, focused on building a body of research-proven program models/strategies, and scaling them up, so as to produce major progress in education, poverty reduction, crime prevention, and other areas. The paper summarizes the rationale for this approach, then…

Drug Prohibition in the United States: Costs, Consequences, and Alternatives

NASA Astrophysics Data System (ADS)

Nadelmann, Ethan A.

1989-09-01

``Drug legalization'' increasingly merits serious consideration as both an analytical model and a policy option for addressing the ``drug problem.'' Criminal justice approaches to the drug problem have proven limited in their capacity to curtail drug abuse. They also have proven increasingly costly and counterproductive. Drug legalization policies that are wisely implemented can minimize the risks of legalization, dramatically reduce the costs of current policies, and directly address the problems of drug abuse.

Ten years of provenance research at Michigan State University and the next steps in tree improvement

Treesearch

Jonathan W. Wright

1970-01-01

Michigan State University's first provenance test was started in 1958, a little more than a decade ago. Tests in three more species were started in 1959. Others have been added until the list of species covered now totals 28. There are such experiments in eight species of pine, six of elm, three of spruce, two each of larch and the true firs, and one each of...

Occult pulmonary embolism: a common occurrence in deep venous thrombosis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dorfman, G.S.; Cronan, J.J.; Tupper, T.B.

1987-02-01

Ventilation-perfusion scans were used in a prospective study to determine the prevalence of occult pulmonary embolus in proven deep venous thrombosis. Fifty-eight patients without symptoms of pulmonary embolism, but with venographically proven deep venous thrombosis, were subjected to chest radiographs, /sup 99m/Tc macroaggregated-albumin perfusion scans, and /sup 133/Xe ventilation scans. Of the 49 patients with deep venous thrombosis proximal to the calf veins, 17 (35%) had high-probability scans. Of all 58 patients, only 12 (21%) had normal scans. When the study population was compared with a group of 430 patients described in reports of pulmonary perfusion in asymptomatic persons, amore » significantly higher percentage of high-probability scans was found in the study population with deep venous thrombosis. Baseline ventilation-perfusion lung scanning is valuable for patients with proven above-knee deep venous thrombosis.« less

Provenance establishment of coffee using solution ICP-MS and ICP-AES.

PubMed

Valentin, Jenna L; Watling, R John

2013-11-01

Statistical interpretation of the concentrations of 59 elements, determined using solution based inductively coupled plasma mass spectrometry (ICP-MS) and inductively coupled plasma emission spectroscopy (ICP-AES), was used to establish the provenance of coffee samples from 15 countries across five continents. Data confirmed that the harvest year, degree of ripeness and whether the coffees were green or roasted had little effect on the elemental composition of the coffees. The application of linear discriminant analysis and principal component analysis of the elemental concentrations permitted up to 96.9% correct classification of the coffee samples according to their continent of origin. When samples from each continent were considered separately, up to 100% correct classification of coffee samples into their countries, and plantations of origin was achieved. This research demonstrates the potential of using elemental composition, in combination with statistical classification methods, for accurate provenance establishment of coffee. Copyright © 2013 Elsevier Ltd. All rights reserved.

BioQ: tracing experimental origins in public genomic databases using a novel data provenance model.

PubMed

Saccone, Scott F; Quan, Jiaxi; Jones, Peter L

2012-04-15

Public genomic databases, which are often used to guide genetic studies of human disease, are now being applied to genomic medicine through in silico integrative genomics. These databases, however, often lack tools for systematically determining the experimental origins of the data. We introduce a new data provenance model that we have implemented in a public web application, BioQ, for assessing the reliability of the data by systematically tracing its experimental origins to the original subjects and biologics. BioQ allows investigators to both visualize data provenance as well as explore individual elements of experimental process flow using precise tools for detailed data exploration and documentation. It includes a number of human genetic variation databases such as the HapMap and 1000 Genomes projects. BioQ is freely available to the public at http://bioq.saclab.net.

Quantitative Metrics for Provenance in the Global Change Information System

NASA Astrophysics Data System (ADS)

Sherman, R. A.; Tipton, K.; Elamparuthy, A.

2017-12-01

The Global Change Information System (GCIS) is an open-source web-based resource to provide traceable provenance for government climate information, particularly the National Climate Assessment and other climate science reports from the U.S. Global Change Research Program. Since 2014, GCIS has been adding and updating information and linking records to make the system as complete as possible for the key reports. Our total count of records has grown to well over 20,000, but until recently there hasn't been an easy way to measure how well all those records were serving the mission of providing provenance. The GCIS team has recently established quantitative measures of whether each record has sufficient metadata and linkages to be useful for users of our featured climate reports. We will describe our metrics and show how they can be used to guide future development of GCIS and aid users of government climate data.

Interoperability Using Lightweight Metadata Standards: Service & Data Casting, OpenSearch, OPM Provenance, and Shared SciFlo Workflows

NASA Astrophysics Data System (ADS)

Wilson, B. D.; Manipon, G.; Hua, H.; Fetzer, E.

2011-12-01

Under several NASA grants, we are generating multi-sensor merged atmospheric datasets to enable the detection of instrument biases and studies of climate trends over decades of data. For example, under a NASA MEASURES grant we are producing a water vapor climatology from the A-Train instruments, stratified by the Cloudsat cloud classification for each geophysical scene. The generation and proper use of such multi-sensor climate data records (CDR's) requires a high level of openness, transparency, and traceability. To make the datasets self-documenting and provide access to full metadata and traceability, we have implemented a set of capabilities and services using known, interoperable protocols. These protocols include OpenSearch, OPeNDAP, Open Provenance Model, service & data casting technologies using Atom feeds, and REST-callable analysis workflows implemented as SciFlo (XML) documents. We advocate that our approach can serve as a blueprint for how to openly "document and serve" complex, multi-sensor CDR's with full traceability. The capabilities and services provided include: - Discovery of the collections by keyword search, exposed using OpenSearch protocol; - Space/time query across the CDR's granules and all of the input datasets via OpenSearch; - User-level configuration of the production workflows so that scientists can select additional physical variables from the A-Train to add to the next iteration of the merged datasets; - Efficient data merging using on-the-fly OPeNDAP variable slicing & spatial subsetting of data out of input netCDF and HDF files (without moving the entire files); - Self-documenting CDR's published in a highly usable netCDF4 format with groups used to organize the variables, CF-style attributes for each variable, numeric array compression, & links to OPM provenance; - Recording of processing provenance and data lineage into a query-able provenance trail in Open Provenance Model (OPM) format, auto-captured by the workflow engine; - Open Publishing of all of the workflows used to generate products as machine-callable REST web services, using the capabilities of the SciFlo workflow engine; - Advertising of the metadata (e.g. physical variables provided, space/time bounding box, etc.) for our prepared datasets as "datacasts" using the Atom feed format; - Publishing of all datasets via our "DataDrop" service, which exploits the WebDAV protocol to enable scientists to access remote data directories as local files on their laptops; - Rich "web browse" of the CDR's with full metadata and the provenance trail one click away; - Advertising of all services as Google-discoverable "service casts" using the Atom format. The presentation will describe our use of the interoperable protocols and demonstrate the capabilities and service GUI's.

K/Ar Dating of Fine Grained Sediments Near Prydz Bay, Antarctica: East Antarctic Ice Sheet Behavior During the Middle-Miocene Climate Transition

NASA Astrophysics Data System (ADS)

Duchesne, A. E.; Pierce, E. L.; Williams, T.; Hemming, S. R.; Johnson, D. L.; May, T.; Gombiner, J.; Torfstein, A.

2012-12-01

¶ The Middle Miocene Climate Transition (MMCT) (~14 Ma) represents a time of major East Antarctic Ice-Sheet (EAIS) expansion, with research suggesting major global sea level fall on the order of ~60 meters (John et al., 2011, EPSL). Ocean Drilling Program (ODP) core data from Site 1165B near Prydz Bay shows an influx of cobbles deposited ~13.8-13.5 Ma, representing a sudden burst of ice-rafted detritus (IRD) during the MMCT. Based on 40Ar/39Ar dating of hornblendes and/or biotite grains, 5 of 6 dated pebbles from a companion study show Wilkes Land origins, indicating transport from over 1500 kilometers away. However, samples throughout this time interval have an anomalously low abundance of sand, thus we seek to understand the sedimentary processes that led to the deposition of these isolated dropstones in a fine matrix through provenance studies of the core's terrigenous fine fraction. Geochemical provenance studies of the terrigenous fraction of marine sediments can aid in identifying past dynamic EAIS behavior; the few outcrops available on the continent provide specific rock characterizations and age constraints from which cored marine sediments can then be matched to using established radiogenic isotope techniques. Here we apply the K/Ar dating method as a provenance tool for identifying the source area(s) of fine-grained terrigenous sediments (<63 μm) deposited during the MMCT. ¶ After source area characterization, we find that the fine-grained sediments from the mid-Miocene show a mixture of both local Prydz Bay sourcing (~400 Ma signature) and Wilkes Land provenance (~900 Ma signature). While locally-derived Prydz Bay sediments are likely to have been delivered via meltwater from ice and deposited as hemipelagic sediments (with some possible bottom current modification, as this is a drift site), sediments sourced from Wilkes Land required transport via large icebergs. Future work will involve further provenance determination on both the fine-grained sediments and the abundant dropstones deposited at ODP Site 1165B during the MMCT. We anticipate that the use of the K/Ar radiometric dating technique as a proxy for the study of glacially transported fine-grained terrigenous materials will enable future Antarctic provenance research and further aid in providing insight into past EAIS behavior.; ODP Core 34X from Site 1165B

Capturing and Understanding Experiment Provenance using NiNaC

NASA Astrophysics Data System (ADS)

Rosati, C.

2017-12-01

A problem the model development team faces at the GFDL is determining climate model experiment provenance. Each experiment is configured with at least one configuration file which may reference other files. The experiment then passes through three phases before completion. Configuration files or other input files may be modified between phases. Finding the modifications later is tedious due to the expanse of the experiment input and duplication across phases. Determining provenance may be impossible if any file has been changed or deleted. To reduce these efforts and address these problems, we propose a new toolset, NiNaC, for archiving experiment provenance from the beginning of the experiment to the end and every phase in-between. Each of the three phases, check-out, build, and run, of the experiment depends on the previous phase. We use a graph to model the phase dependencies. Let each phase be represented by a node. Let each edge correspond to a dependency between phases where the node incident with the tail depends on the node incident with the head. It follows that the dependency graph is a tree. We reduce the problem to finding the lowest common ancestor and diffing the successor nodes. All files related to input for a phase are assigned a checksum. A new file is created to aggregate the checksums. Then each phase is assigned a checksum of aforementioned file as an identifier. Any change to part of a phase configuration will create unique checksums in all subsequent phases. Finding differences between experiments with this toolset is as simple as diffing two files containing checksums found by traversing the tree. One new benefit is that this toolset now allows differences in source code to be found after experiments are run, which was previously impossible for executables that cannot be linked to a known version controlled source code. Knowing that these changes exist allows us to give priority to help desk tickets concerning unmodified supported experiment releases, and minimize effort spent on unsupported experiments. It is also possible that a change is made, either by mistake or by system error. NiNaC would find the exact file in the precise phase with the change. In this way, NiNaC makes provenance tracking less tedious and solves problems where tracking provenance may previously have been impossible to do.

Features of Scots pine radial growth in conditions of provenance trial.

NASA Astrophysics Data System (ADS)

Kuzmin, Sergey; Kuzmina, Nina

2013-04-01

Provenance trial of Scots pine in Boguchany forestry of Krasnoyarsk krai is conducted on two different soils - dark-grey loam forest soil and sod-podzol sandy soil. Complex of negative factors for plant growth and development appears in dry conditions of sandy soil. It could results in decrease of resistance to diseases. Sandy soils in different climatic zones have such common traits as low absorbing capacity, poorness of elemental nutrition, low microbiological activity and moisture capacity, very high water permeability. But Scots pine trees growing in such conditions could have certain advantages and perspectives of use. In the scope of climate change (global warming) the study of Scots pine growth on sandy soil become urgent because of more frequent appearance of dry seasons. Purpose of the work is revelation of radial growth features of Scots pine with different origin in dry conditions of sandy soil and assessment of external factors influence. The main feature of radial growth of majority of studied pine provenances in conditions of sandy soil is presence of significant variation of increment with distinct decline in 25-years old with loss of tree rings in a number of cases. The reason of it is complex of factors: deficit of June precipitation and next following outbreak of fungal disease. Found «frost rings» for all trees of studied clymatypes in 1992 are the consequence of temperature decline from May 21 to June 2 - from 23 down to 2 degree Celsius. Perspective climatypes with biggest radial increments and least sensitivity to fungal disease were revealed. Eniseysk and Vikhorevka (from Krasnoyarsk krai and Irkutsk oblast)provenances of pine have the biggest radial increments, the least sensitivity to Cenangium dieback and smallest increments decline. These climatypes are in the group of perspective provenances and in present time they are recommended for wide trial in the region for future use in plantation forest growing. Kandalaksha (Murmansk oblast) climatype from northern taiga with good resistance to pathogen have nonsignificant decline in radial increment during epiphytoty in comparison with local and southern climatypes. Southern Chemal provenance (Altai) after influence of Cenangium dieback has more than others losses of tree rings as the result of nonresistance to this fungal disease.

Translations on Eastern Europe, Political, Sociological, and Military Affairs, Number 1494

DTIC Science & Technology

1978-01-12

the joining of scientific forces together to achieve it. A New Process for the Chemical Industry In this way...possibility of paid exemption from work until the first birthday of the second and every additional child. The fact that the 40- hour workweek has taken...34 Time has proven us right and " the new ," helped by these journals, has proven to be a terrible fiasco. The price? Human lives . I wonder why

Twenty-two year results of a Scots pine (Pinus sylvestris L.) provenance test in North Dakota

Treesearch

Richard A. Cunningham; David F. Van Haverbeke

1991-01-01

A provenance test of 49 seed sources of Scots pine (Pinus sylvestris L.) from eastern Europe, Russia, and Siberia was established in two plantations in north-central North Dakota. After 22 years, trees from seed sources within the region bounded by 20° to 57° east longitude and 50° to 58° north latitude were taller, and larger in diameter, and had denser crown and...

Performance of Panfungal- and Specific-PCR-Based Procedures for Etiological Diagnosis of Invasive Fungal Diseases on Tissue Biopsy Specimens with Proven Infection: a 7-Year Retrospective Analysis from a Reference Laboratory

PubMed Central

Bernal-Martinez, L.; Castelli, M. V.; Rodriguez-Tudela, J. L.; Cuenca-Estrella, M.

2014-01-01

A retrospective analysis of real-time PCR (RT-PCR) results for 151 biopsy samples obtained from 132 patients with proven invasive fungal diseases was performed. PCR-based techniques proved to be fast and sensitive and enabled definitive diagnosis in all cases studied, with detection of a total of 28 fungal species. PMID:24574295

Integrating prediction, provenance, and optimization into high energy workflows

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schram, M.; Bansal, V.; Friese, R. D.

We propose a novel approach for efficient execution of workflows on distributed resources. The key components of this framework include: performance modeling to quantitatively predict workflow component behavior; optimization-based scheduling such as choosing an optimal subset of resources to meet demand and assignment of tasks to resources; distributed I/O optimizations such as prefetching; and provenance methods for collecting performance data. In preliminary results, these techniques improve throughput on a small Belle II workflow by 20%.

The urban risk and migration risk factors for schizophrenia: are cats the answer?

PubMed

Torrey, E Fuller; Yolken, Robert H

2014-11-01

Being born in and/or raised in an urban area is a proven risk factor for developing schizophrenia. Migrating from countries such as Jamaica or Morocco to countries such as England or the Netherlands is also a proven risk factor for developing schizophrenia. The transmission of Toxoplasma gondii oocysts to children is reviewed and proposed as a partial explanation for both of these risk factors. Copyright © 2014 Elsevier B.V. All rights reserved.

Quantitative and Qualitative Analysis of Flavonoids and Phenolic Acids in Snow Chrysanthemum (Coreopsis tinctoria Nutt.) by HPLC-DAD and UPLC-ESI-QTOF-MS.

PubMed

Yang, Yinjun; Sun, Xinguang; Liu, Jinjun; Kang, Liping; Chen, Sibao; Ma, Baiping; Guo, Baolin

2016-09-30

A simple, accurate and reliable high performance liquid chromatography coupled with photodiode array detection (HPLC-DAD) method was developed and then successfully applied for simultaneous quantitative analysis of eight compounds, including chlorogenic acid ( 1 ), ( R / S )-flavanomarein ( 2 ), butin-7- O -β-d-glucopyranoside ( 3 ), isookanin ( 4 ), taxifolin ( 5 ), 5,7,3',5'-tetrahydroxyflavanone-7- O -β-d-glucopyranoside ( 6 ), marein ( 7 ) and okanin ( 8 ), in 23 batches of snow chrysanthemum of different seed provenance and from various habitats. The results showed total contents of the eight compounds in the samples with seed provenance from Keliyang (Xinjiang, China), are higher than in samples from the other five provenances by 52.47%, 15.53%, 19.78%, 21.17% and 5.06%, respectively, which demonstrated that provenance has a great influence on the constituents in snow chrysanthemum. Meanwhile, an ultra performance liquid chromatography coupled with electrospray ionization and quadrupole time-of-flight-mass spectrometry (UPLC-ESI-QTOF-MS) was also employed to rapidly separate and identify flavonoids and phenolic acids in snow chrysanthemum from Keliyang. As a result, a total of 30 constituents, including 26 flavonoids and four phenolic acids, were identified or tentatively identified based on the exact mass information, the fragmentation characteristics, and retention times of eight reference standards. This work may provide an efficient approach to comprehensively evaluate the quality of snow chrysanthemum.

Provenance of fine-grained sediments in the inner shelf of the Korea Strait (South Sea), Korea

NASA Astrophysics Data System (ADS)

Um, In kwon; Choi, Man Sik; Bae, Sung Ho; Song, Yunho; Kong, Gee Soo

2017-12-01

Major metals (Al, Fe, Mg, and Ti), trace metals (Li, Cs, Sc, and Rb), and rare earth elements (REEs) in the fine-grained sediments (< 15 μm) of the central South Sea mud (CSSM) were analyzed to determine the sediment provenance. The spatial distribution of the analyzed elements showed a clear separation between the western (W-CSSM) and eastern (E-CSSM) regions of the CSSM. Concentrations of Fe, Ti, Mg, Sc, and REEs were higher in the WCSSM, whereas concentrations of Al, Cs, Li, and Rb were higher in the E-CSSM. Unlike the ratios of trace metals ((Cs+Sc)/Li and Rb/Li), REEs could not be used to track the provenance of fine-grained sediments because of a grain size effect. The mixing relationships of the provenance indicators showed that the fine-grained sediments of the CSSM comprise a mixture of the sediments discharged from the Seomjin River (SRS) and sediments eroded and transported from the Heuksan mud belt (HMBS) area by the Korean Coastal Current. Sediments originating from the HMB were deposited mostly in the W-CSSM, whereas those from the Seomjin River were deposited mostly in the E-CSSM. This study indicated that sediments from Chinese rivers as well as the Geum River are important even in the inner shelf of the South Sea of Korea.

Ion Beam Analysis for the provenance attribution of lapis lazuli used in glyptic art: The case of the "Collezione Medicea"

NASA Astrophysics Data System (ADS)

Re, Alessandro; Angelici, Debora; Lo Giudice, Alessandro; Corsi, Jacopo; Allegretti, Silvia; Biondi, Alessia Fabiola; Gariani, Gianluca; Calusi, Silvia; Gelli, Nicla; Giuntini, Lorenzo; Massi, Mirko; Taccetti, Francesco; La Torre, Leonardo; Rigato, Valentino; Pratesi, Giovanni

2015-04-01

The first part of this study reports on the wide campaign for the extension of the database of both trace and minor elements concentration in diopside by means of μ-PIXE measurements and of luminescence spectra in diopside and wollastonite by means of μ-IL measurements. Diopside and wollastonite are actually two of the most common lapis lazuli-forming minerals. For this former part of the study, we analysed rocks of known provenance at the microbeam line of the LNL laboratories in Legnaro (PD) of the Istituto Nazionale di Fisica Nucleare (INFN). The latter part of the paper is dedicated to the non-invasive Ion Beam Analyses (IBA) characterisation of six pieces of the "Collezione Medicea". The collection is exhibited at the Museum of Natural History (University of Firenze) and belonged to the Medici family. It includes artworks made of lapis lazuli manufactured in the 16th and 17th centuries but there is not precise information about the provenance of the used raw material. Results on the artworks show, as expected, that the Chilean provenance of the material used for the analysed artworks has to be excluded. Lapis lazuli used for five of the analysed artworks can be ascribed to the Afghan quarry district, while one object cannot be attributed only on the base of diopside and wollastonite analysis.

Provenance of Fine-grained Sediments in the Inner Shelf of the Korea Strait (South Sea), Korea

NASA Astrophysics Data System (ADS)

Um, In kwon; Choi, Man Sik; Bae, Sung Ho; Song, Yunho; Kong, Gee Soo

2018-03-01

Major metals (Al, Fe, Mg, and Ti), trace metals (Li, Cs, Sc, and Rb), and rare earth elements (REEs) in the fine-grained sediments (< 15 μm) of the central South Sea mud (CSSM) were analyzed to determine the sediment provenance. The spatial distribution of the analyzed elements showed a clear separation between the western (W-CSSM) and eastern (E-CSSM) regions of the CSSM. Concentrations of Fe, Ti, Mg, Sc, and REEs were higher in the WCSSM, whereas concentrations of Al, Cs, Li, and Rb were higher in the E-CSSM. Unlike the ratios of trace metals ((Cs+Sc)/Li and Rb/Li), REEs could not be used to track the provenance of fine-grained sediments because of a grain size effect. The mixing relationships of the provenance indicators showed that the fine-grained sediments of the CSSM comprise a mixture of the sediments discharged from the Seomjin River (SRS) and sediments eroded and transported from the Heuksan mud belt (HMBS) area by the Korean Coastal Current. Sediments originating from the HMB were deposited mostly in the W-CSSM, whereas those from the Seomjin River were deposited mostly in the E-CSSM. This study indicated that sediments from Chinese rivers as well as the Geum River are important even in the inner shelf of the South Sea of Korea.

Early-onset neonatal sepsis is associated with a high heart rate during automatically selected stationary periods.

PubMed

Nguyen, Nga; Vandenbroucke, Laurent; Hernández, Alfredo; Pham, Tu; Beuchée, Alain; Pladys, Patrick

2017-05-01

This study examined the heart rate variability characteristics associated with early-onset neonatal sepsis in a prospective, observational controlled study. Eligible patients were full-term neonates hospitalised with clinical signs that suggested early-onset sepsis and a C-reactive protein of >10 mg/L. Sepsis was considered proven in cases of symptomatic septicaemia, meningitis, pneumonia or enterocolitis. Heart rate variability parameters (n = 16) were assessed from five-, 15- and 30-minute stationary sequences automatically selected from electrocardiographic recordings performed at admission and compared with a control group using the U-test with post hoc Benjamini-Yekutieli correction. Stationary sequences corresponded to the periods with the lowest changes of heart rate variability over time. A total of 40 full-term infants were enrolled, including 14 with proven sepsis. The mean duration of the cardiac cycle length was lower in the proven sepsis group than in the control group (n = 11), without other significant changes in heart rate variability parameters. These durations, measured in five-minute stationary periods, were 406 (367-433) ms in proven sepsis group versus 507 (463-522) ms in the control group (p < 0.05). Early-onset neonatal sepsis was associated with a high mean heart rate measured during automatically selected stationary periods. ©2017 Foundation Acta Paediatrica. Published by John Wiley & Sons Ltd.

The capacity to cope with climate warming declines from temperate to tropical latitudes in two widely distributed Eucalyptus species.

PubMed

Drake, John E; Aspinwall, Michael J; Pfautsch, Sebastian; Rymer, Paul D; Reich, Peter B; Smith, Renee A; Crous, Kristine Y; Tissue, David T; Ghannoum, Oula; Tjoelker, Mark G

2015-01-01

As rapid climate warming creates a mismatch between forest trees and their home environment, the ability of trees to cope with warming depends on their capacity to physiologically adjust to higher temperatures. In widespread species, individual trees in cooler home climates are hypothesized to more successfully acclimate to warming than their counterparts in warmer climates that may approach thermal limits. We tested this prediction with a climate-shift experiment in widely distributed Eucalyptus tereticornis and E. grandis using provenances originating along a ~2500 km latitudinal transect (15.5-38.0°S) in eastern Australia. We grew 21 provenances in conditions approximating summer temperatures at seed origin and warmed temperatures (+3.5 °C) using a series of climate-controlled glasshouse bays. The effects of +3.5 °C warming strongly depended on home climate. Cool-origin provenances responded to warming through an increase in photosynthetic capacity and total leaf area, leading to enhanced growth of 20-60%. Warm-origin provenances, however, responded to warming through a reduction in photosynthetic capacity and total leaf area, leading to reduced growth of approximately 10%. These results suggest that there is predictable intraspecific variation in the capacity of trees to respond to warming; cool-origin taxa are likely to benefit from warming, while warm-origin taxa may be negatively affected. © 2014 John Wiley & Sons Ltd.

New markers to identify the provenance of lapis lazuli: trace elements in pyrite by means of micro-PIXE

NASA Astrophysics Data System (ADS)

Re, A.; Angelici, D.; Lo Giudice, A.; Maupas, E.; Giuntini, L.; Calusi, S.; Gelli, N.; Massi, M.; Borghi, A.; Gallo, L. M.; Pratesi, G.; Mandò, P. A.

2013-04-01

Lapis lazuli has been used for glyptics and carving since the fifth millennium BC to produce jewels, amulets, seals, inlays, etc; the identification of the origin of the stone used for carving artworks may be valuable for reconstructing old trade routes. Since ancient lapis lazuli art objects are precious, only non-destructive techniques can be used to identify their provenance, and ion beam analysis (IBA) techniques allow us to characterise this stone in a fully non-invasive way. In addition, by using an ion microprobe, we have been able to focus the analysis on single crystals, as their typical dimensions may range from a few microns to hundreds of microns. Provenance markers, identified in previous IBA studies and already presented elsewhere, were based on the presence/absence of mineral phases, on the presence/quantity of trace elements inside a phase and on characteristic features of the luminescence spectra. In this work, a systematic study on pyrite crystals, a common accessory mineral in lapis lazuli, was carried out, following a multi-technique approach: optical microscopy and SEM-EDX to select crystals for successive trace element micro-PIXE measurements at two Italian facilities, the INFN Laboratori Nazionali di Legnaro and the INFN LABEC laboratory in Firenze. The results of this work allowed us to obtain new markers for lapis lazuli provenance identification.

Underestimation of malignancy in biopsy-proven cases of stromal fibrosis

PubMed Central

Lad, S; Seely, J M; Schweitzer, M E

2014-01-01

Objective: To determine the rate of underestimation of malignancy in patients with biopsy-proven stromal fibrosis. Methods: Following institutional review board approval, we retrospectively reviewed the charts of patients with biopsy-proven stromal fibrosis who underwent percutaneous breast biopsy in the 5-year period between 1 January 2005 and 31 December 2009. The medical records and the histopathology in patients who underwent repeat biopsy and/or surgical excision at the site of stromal fibrosis within 2 years were reviewed. Interval stability for up to 2 years was documented in patients who did not undergo additional biopsy or surgical excision. An upgrade was defined as any patient with biopsy-proven stromal fibrosis or fibroadenoma with evidence of malignancy at the site of biopsy within 2 years. Results: 365 cases of stromal fibrosis were identified, of which 25 (7%) were upgraded to in situ or invasive malignancy on repeat biopsy or surgical excision. 7 were upgraded to ductal carcinoma in situ and 18 were upgraded to invasive cancer. Of the upgraded cases, 8 out of 24 (32%) were considered concordant with a benign diagnosis. The false-negative rate, that is, cases of stromal fibrosis concordant with benignity, but with subsequent upgrade, comprised 2% of all cases. Conclusion: In biopsy-proven cases of stromal fibrosis, there is a 7% upgrade to malignancy. We recommend that all instances of stromal fibrosis with radiology–pathology discordance undergo repeat biopsy or surgical excision. Cases that demonstrate radiology–pathology concordance can be safely categorized as a Breast Imaging Reporting and Data System 3 (BI-RADS® 3) lesion with a 6-month follow-up, owing to a false-negative rate for missed cancer of 2%. Advances in knowledge: We now recommend that concordant cases of stromal fibrosis be categorized as BI-RADS 3 with a short-term follow-up, as this results in a missed cancer rate of 2%. PMID:24846442

Evaluation and Quality Control for the Copernicus Seasonal Forecast Systems

NASA Astrophysics Data System (ADS)

Manubens, N.; Hunter, A.; Bedia, J.; Bretonnière, P. A.; Bhend, J.; Doblas-Reyes, F. J.

2017-12-01

The EU funded Copernicus Climate Change Service (C3S) will provide authoritative information about past, current and future climate for a wide range of users, from climate scientists to stakeholders from a wide range of sectors including insurance, energy or transport. It has been recognized that providing information about the products' quality and provenance is paramount to establish trust in the service and allow users to make best use of the available information. This presentation outlines the work being conducted within the Quality Assurance for Multi-model Seasonal Forecast Products project (QA4Seas). The aim of QA4Seas is to develop a strategy for the evaluation and quality control (EQC) of the multi-model seasonal forecasts provided by C3S. First, we present the set of guidelines the data providers must comply with, ensuring the data is fully traceable and harmonized across data sets. Second, we discuss the ongoing work on defining a provenance and metadata model that is able to encode such information, and that can be extended to describe the steps followed to obtain the final verification products such as maps and time series of forecast quality measures. The metadata model is based on the Resource Description Framework W3C standard, being thus extensible and reusable. It benefits from widely adopted vocabularies to describe data provenance and workflows, as well as from expert consensus and community-support for the development of the verification and downscaling specific ontologies. Third, we describe the open source software being developed to generate fully reproducible and certifiable seasonal forecast products, which also attaches provenance and metadata information to the verification measures and enables the user to visually inspect the quality of the C3S products. QA4Seas is seeking collaboration with similar initiatives, as well as extending the discussion to interested parties outside the C3S community to share experiences and establish global common guidelines or best practices regarding data provenance.

Enhanced provenance interpretation using combined U-Pb and (U-Th)/He double dating of detrital zircon grains from lower Miocene strata, proximal Gulf of Mexico Basin, North America

NASA Astrophysics Data System (ADS)

Xu, Jie; Stockli, Daniel F.; Snedden, John W.

2017-10-01

Detrital zircon U-Pb analysis is an effective approach for investigating sediment provenance by relating crystallization age to potential crystalline source terranes. Studies of large passive margin basins, such as the Gulf of Mexico Basin, that have received sediment from multiple terranes with non-unique crystallization ages or sedimentary strata, benefit from additional constraints to better elucidate provenance interpretation. In this study, U-Pb and (U-Th)/He double dating analyses on single zircons from the lower Miocene sandstones in the northern Gulf of Mexico Basin reveal a detailed history of sediment source evolution. U-Pb age data indicate that most zircon originated from five major crystalline provinces, including the Western Cordillera Arc (<250 Ma), the Appalachian-Ouachita orogen (500-260 Ma), the Grenville (1300-950 Ma) orogen, the Mid-Continent Granite-Rhyolite (1500-1300 Ma), and the Yavapai-Mazatzal (1800-1600 Ma) terranes as well as sparse Pan-African (700-500 Ma) and Canadian Shield (>1800 Ma) terranes. Zircon (U-Th)/He ages record tectonic cooling and exhumation in the U.S. since the Mesoproterozoic related to the Grenville to Laramide Orogenies. The combined crystallization and cooling information from single zircon double dating can differentiate volcanic and plutonic zircons. Importantly, the U-Pb-He double dating approach allows for the differentiation between multiple possible crystallization-age sources on the basis of their subsequent tectonic evolution. In particular, for Grenville zircons that are present in all of lower Miocene samples, four distinct zircon U-Pb-He age combinations are recognizable that can be traced back to four different possible sources. The integrated U-Pb and (U-Th)/He data eliminate some ambiguities and improves the provenance interpretation for the lower Miocene strata in the northern Gulf of Mexico Basin and illustrate the applicability of this approach for other large-scale basins to reconstruct sediment provenance and dispersal patterns.

A Clinical Framework to Facilitate Risk Stratification When Considering an Active Surveillance Alternative to Immediate Biopsy and Surgery in Papillary Microcarcinoma.

PubMed

Brito, Juan P; Ito, Yasuhiro; Miyauchi, Akira; Tuttle, R Michael

2016-01-01

The 2015 American Thyroid Association thyroid cancer management guidelines endorse an active surveillance management approach as an alternative to immediate biopsy and surgery in subcentimeter thyroid nodules with highly suspicious ultrasonographic characteristics and in cytologically confirmed very low risk papillary thyroid cancer (PTC). However, the guidelines provide no specific recommendations with regard to the optimal selection of patients for an active surveillance management approach. This article describes a risk-stratified clinical decision-making framework that was developed by the thyroid cancer disease management team at Memorial Sloan Kettering Cancer Center as the lessons learned from Kuma Hospital in Japan were applied to a cohort of patients with probable or proven papillary microcarcinoma (PMC) who were being evaluated for an active surveillance management approach in the United States. A risk-stratified approach to the evaluation of patients with probable or proven PMC being considered for an active surveillance management approach requires an evaluation of three interrelated but distinct domains: (i) tumor/neck ultrasound characteristics (e.g., size of the primary tumor, the location of the tumor within the thyroid gland); (ii) patient characteristics (e.g., age, comorbidities, willingness to accept observation); and (iii) medical team characteristics (e.g., availability and experience of the multidisciplinary team). Based on an analysis of the critical factors within each of these domains, patients with probable or proven PTC can then be classified as ideal, appropriate, or inappropriate candidates for active surveillance. Risk stratification utilizing the proposed decision-making framework will improve the ability of clinicians to recognize individual patients with proven or probable PMC who are most likely to benefit from an active surveillance management option while at the same time identifying patients with proven or probable PMC that would be better served with an upfront biopsy and surgical management approach.

Targeted versus statistical approaches to selecting parameters for modelling sediment provenance

NASA Astrophysics Data System (ADS)

Laceby, J. Patrick

2017-04-01

One effective field-based approach to modelling sediment provenance is the source fingerprinting technique. Arguably, one of the most important steps for this approach is selecting the appropriate suite of parameters or fingerprints used to model source contributions. Accordingly, approaches to selecting parameters for sediment source fingerprinting will be reviewed. Thereafter, opportunities and limitations of these approaches and some future research directions will be presented. For properties to be effective tracers of sediment, they must discriminate between sources whilst behaving conservatively. Conservative behavior is characterized by constancy in sediment properties, where the properties of sediment sources remain constant, or at the very least, any variation in these properties should occur in a predictable and measurable way. Therefore, properties selected for sediment source fingerprinting should remain constant through sediment detachment, transportation and deposition processes, or vary in a predictable and measurable way. One approach to select conservative properties for sediment source fingerprinting is to identify targeted tracers, such as caesium-137, that provide specific source information (e.g. surface versus subsurface origins). A second approach is to use statistical tests to select an optimal suite of conservative properties capable of modelling sediment provenance. In general, statistical approaches use a combination of a discrimination (e.g. Kruskal Wallis H-test, Mann-Whitney U-test) and parameter selection statistics (e.g. Discriminant Function Analysis or Principle Component Analysis). The challenge is that modelling sediment provenance is often not straightforward and there is increasing debate in the literature surrounding the most appropriate approach to selecting elements for modelling. Moving forward, it would be beneficial if researchers test their results with multiple modelling approaches, artificial mixtures, and multiple lines of evidence to provide secondary support to their initial modelling results. Indeed, element selection can greatly impact modelling results and having multiple lines of evidence will help provide confidence when modelling sediment provenance.

Capturing, Harmonizing and Delivering Data and Quality Provenance

NASA Technical Reports Server (NTRS)

Leptoukh, Gregory; Lynnes, Christopher

2011-01-01

Satellite remote sensing data have proven to be vital for various scientific and applications needs. However, the usability of these data depends not only on the data values but also on the ability of data users to assess and understand the quality of these data for various applications and for comparison or inter-usage of data from different sensors and models. In this paper, we describe some aspects of capturing, harmonizing and delivering this information to users in the framework of distributed web-based data tools.

Use of the LANDSAT-2 Data Collection System in the Colorado River Basin Weather Modification Program. [San Juan Mountains, Colorado

NASA Technical Reports Server (NTRS)

Kahan, A. M. (Principal Investigator)

1975-01-01

The author has identified the following significant results. The LANDSAT data collection system has proven itself to be a valuable tool for control of cloud seeding operations and for verification of weather forecasts. These platforms have proven to be reliable weather resistant units suitable for the collection of hydrometeorological data from remote severe weather environments. The detailed design of the wind speed and direction system and the wire-wrapping of the logic boards were completed.

Finalizing the Dtag: implementation and testing of design improvements for reliability and availability

DTIC Science & Technology

2016-10-14

ABSTRACT DTAGs have proven to be a valuable tool for the study of marine mammal acoustics and fine scale motion. The success of the DTAG has resulted in...Underwater Acoustics , Digital Communications 16. SECURITY CLASSIFICATION OF: 17. LIMITATION OF a. REPORT b. ABSTRACT c. THIS PAGE ABSTRACT u u u...continuously monitor and improve the tag design.\\ OBJECTIVES Dtags have proven to be a valuable tool for the study of marine mammal acoustics and fine

Inflatable Structures Technology Handbook. Chapter 21; Inflatable Habitats

NASA Technical Reports Server (NTRS)

Kennedy, Kriss J.; Raboin, Jasen; Spexarth, Gary; Valle, Gerard

2000-01-01

The technologies required to design, fabricate, and utilize an inflatable module for space applications has been demonstrated and proven by the TransHab team during the development phase of the program. Through testing and hands-on development several issues about inflatable space structures have been addressed , such as: ease of manufacturing, structural integrity, micrometeorite protection, folding , and vacuum deployment. The TransHab inflatable technology development program has proven that not only are inflatable structures a viable option, but they also offer significant advantages over conventional metallic structures.

J-2X Upper Stage Engine: Hardware and Testing 2009

NASA Technical Reports Server (NTRS)

Buzzell, James C.

2009-01-01

Mission: Common upper stage engine for Ares I and Ares V. Challenge: Use proven technology from Saturn X-33, RS-68 to develop the highest Isp GG cycle engine in history for 2 missions in record time . Key Features: LOX/LH2 GG cycle, series turbines (2), HIP-bonded MCC, pneumatic ball-sector valves, on-board engine controller, tube-wall regen nozzle/large passively-cooled nozzle extension, TEG boost/cooling . Development Philosophy: proven hardware, aggressive schedule, early risk reduction, requirements-driven.

Potential Impacts of Ultra-High-Pressure (UHP) Technology of National Fire Protection Agency (NFPA) Standard 403 (POSTPRINT)

DTIC Science & Technology

2007-06-25

AFFF tests, and one-tenth the NFPA 403 standard. r 2007 Elsevier Ltd. All rights reserved. Keywords: Aqueous film forming foam ( AFFF ...proven to reduce water- aqueous film forming foam ( AFFF ) agent quantities 2–3 times over conventional water- foam systems on 325–480m2 (3500–5200 ft2...and combined agent firefighting systems (CAFFS) have proven to enhance the performance of firefighting equipment using water and aqueous

NAVAIR - U.S. Navy Naval Air Systems Command - Navy and Marine Corps

Science.gov Websites

FOIA Aircraft & Weapons Fixed Wing AV-8B C-2 C-9 C-12 C-20 C-26 C-37 / C-38 C-40 C-130 E-2 E-6B EA -6B EA-18G F-5 F-16 F-35 F/A-18 P-3 P-8 Trainers UC-35 Specialized and Proven Aircraft Rotorcraft H-1 H-53 H-60 V-22 Presidential Helicopter Trainers Specialized and Proven Aircraft Weapons AARGM

Preliminary Climate Uncertainty Quantification Study on Model-Observation Test Beds at Earth Systems Grid Federation Repository

NASA Astrophysics Data System (ADS)

Lin, G.; Stephan, E.; Elsethagen, T.; Meng, D.; Riihimaki, L. D.; McFarlane, S. A.

2012-12-01

Uncertainty quantification (UQ) is the science of quantitative characterization and reduction of uncertainties in applications. It determines how likely certain outcomes are if some aspects of the system are not exactly known. UQ studies such as the atmosphere datasets greatly increased in size and complexity because they now comprise of additional complex iterative steps, involve numerous simulation runs and can consist of additional analytical products such as charts, reports, and visualizations to explain levels of uncertainty. These new requirements greatly expand the need for metadata support beyond the NetCDF convention and vocabulary and as a result an additional formal data provenance ontology is required to provide a historical explanation of the origin of the dataset that include references between the explanations and components within the dataset. This work shares a climate observation data UQ science use case and illustrates how to reduce climate observation data uncertainty and use a linked science application called Provenance Environment (ProvEn) to enable and facilitate scientific teams to publish, share, link, and discover knowledge about the UQ research results. UQ results include terascale datasets that are published to an Earth Systems Grid Federation (ESGF) repository. Uncertainty exists in observation data sets, which is due to sensor data process (such as time averaging), sensor failure in extreme weather conditions, and sensor manufacture error etc. To reduce the uncertainty in the observation data sets, a method based on Principal Component Analysis (PCA) was proposed to recover the missing values in observation data. Several large principal components (PCs) of data with missing values are computed based on available values using an iterative method. The computed PCs can approximate the true PCs with high accuracy given a condition of missing values is met; the iterative method greatly improve the computational efficiency in computing PCs. Moreover, noise removal is done at the same time during the process of computing missing values by using only several large PCs. The uncertainty quantification is done through statistical analysis of the distribution of different PCs. To record above UQ process, and provide an explanation on the uncertainty before and after the UQ process on the observation data sets, additional data provenance ontology, such as ProvEn, is necessary. In this study, we demonstrate how to reduce observation data uncertainty on climate model-observation test beds and using ProvEn to record the UQ process on ESGF. ProvEn demonstrates how a scientific team conducting UQ studies can discover dataset links using its domain knowledgebase, allowing them to better understand and convey the UQ study research objectives, the experimental protocol used, the resulting dataset lineage, related analytical findings, ancillary literature citations, along with the social network of scientists associated with the study. Climate scientists will not only benefit from understanding a particular dataset within a knowledge context, but also benefit from the cross reference of knowledge among the numerous UQ studies being stored in ESGF.

Shifts in reproductive assurance strategies and inbreeding costs associated with habitat fragmentation in Central American mahogany

PubMed Central

Breed, Martin F; Gardner, Michael G; Ottewell, Kym M; Navarro, Carlos M; Lowe, Andrew J

2012-01-01

The influence of habitat fragmentation on mating patterns and progeny fitness in trees is critical for understanding the long-term impact of contemporary landscape change on the sustainability of biodiversity. We examined the relationship between mating patterns, using microsatellites, and fitness of progeny, in a common garden trial, for the insect-pollinated big-leaf mahogany, Swietenia macrophylla King, sourced from forests and isolated trees in 16 populations across Central America. As expected, isolated trees had disrupted mating patterns and reduced fitness. However, for dry provenances, fitness was negatively related to correlated paternity, while for mesic provenances, fitness was correlated positively with outcrossing rate and negatively with correlated paternity. Poorer performance of mesic provenances is likely because of reduced effective pollen donor density due to poorer environmental suitability and greater disturbance history. Our results demonstrate a differential shift in reproductive assurance and inbreeding costs in mahogany, driven by exploitation history and contemporary landscape context. PMID:22381041

Stable Isotope Ratio and Elemental Profile Combined with Support Vector Machine for Provenance Discrimination of Oolong Tea (Wuyi-Rock Tea)

PubMed Central

Lou, Yun-xiao; Fu, Xian-shu; Yu, Xiao-ping; Zhang, Ya-fen

2017-01-01

This paper focused on an effective method to discriminate the geographical origin of Wuyi-Rock tea by the stable isotope ratio (SIR) and metallic element profiling (MEP) combined with support vector machine (SVM) analysis. Wuyi-Rock tea (n = 99) collected from nine producing areas and non-Wuyi-Rock tea (n = 33) from eleven nonproducing areas were analysed for SIR and MEP by established methods. The SVM model based on coupled data produced the best prediction accuracy (0.9773). This prediction shows that instrumental methods combined with a classification model can provide an effective and stable tool for provenance discrimination. Moreover, every feature variable in stable isotope and metallic element data was ranked by its contribution to the model. The results show that δ2H, δ18O, Cs, Cu, Ca, and Rb contents are significant indications for provenance discrimination and not all of the metallic elements improve the prediction accuracy of the SVM model. PMID:28473941

Archaeology Through Computational Linguistics: Inscription Statistics Predict Excavation Sites of Indus Valley Artifacts.

PubMed

Recchia, Gabriel L; Louwerse, Max M

2016-11-01

Computational techniques comparing co-occurrences of city names in texts allow the relative longitudes and latitudes of cities to be estimated algorithmically. However, these techniques have not been applied to estimate the provenance of artifacts with unknown origins. Here, we estimate the geographic origin of artifacts from the Indus Valley Civilization, applying methods commonly used in cognitive science to the Indus script. We show that these methods can accurately predict the relative locations of archeological sites on the basis of artifacts of known provenance, and we further apply these techniques to determine the most probable excavation sites of four sealings of unknown provenance. These findings suggest that inscription statistics reflect historical interactions among locations in the Indus Valley region, and they illustrate how computational methods can help localize inscribed archeological artifacts of unknown origin. The success of this method offers opportunities for the cognitive sciences in general and for computational anthropology specifically. Copyright © 2015 Cognitive Science Society, Inc.

The Platelia Aspergillus ELISA in diagnosis of invasive pulmonary aspergilosis (IPA).

PubMed

Siemann, M; Koch-Dörfler, M

2001-01-01

The sensitivity of a sandwich enzyme-linked immunosorbent assay (ELISA) for detecting Aspergillus galactomannan was evaluated with 66 serum samples and 113 specimens of the respiratory tract obtained from 52 patients with pulmonary diseases. The patients were divided into five groups: proven invasive pulmonary aspergillosis (IPA) (five patients), probable IPA (seven patients), Aspergillus colonization (eight patients) or unlikely Aspergillus infection (27 patients). Another five patients with doubtful diagnostic test results are discussed in detail. The results of the Platelia Aspergillus ELISA (Sanofi Pasteur, Freiburg, Germany) in testing specimens of the respiratory tract were 90% sensitivity in proven (serum 38%), 60% in probable (serum 37%) and 71% in Aspergillus colonization (serum 0%). Furthermore, 85% of the Aspergillus spp. from positive cultures of specimens of the respiratory tract were also detected in the ELISA. A total of 57% of the culture negative specimens of patients with a least one positive culture or proven aspergillosis in a series of specimens were positive in the ELISA.

BioQ: tracing experimental origins in public genomic databases using a novel data provenance model

PubMed Central

Saccone, Scott F.; Quan, Jiaxi; Jones, Peter L.

2012-01-01

Motivation: Public genomic databases, which are often used to guide genetic studies of human disease, are now being applied to genomic medicine through in silico integrative genomics. These databases, however, often lack tools for systematically determining the experimental origins of the data. Results: We introduce a new data provenance model that we have implemented in a public web application, BioQ, for assessing the reliability of the data by systematically tracing its experimental origins to the original subjects and biologics. BioQ allows investigators to both visualize data provenance as well as explore individual elements of experimental process flow using precise tools for detailed data exploration and documentation. It includes a number of human genetic variation databases such as the HapMap and 1000 Genomes projects. Availability and implementation: BioQ is freely available to the public at http://bioq.saclab.net Contact: ssaccone@wustl.edu Supplementary information: Supplementary data are available at Bioinformatics online. PMID:22426342

[Study on chemical diversity of volatile oils in Houttuynia cordata and their genetic basis].

PubMed

Wu, Lingshang; Si, Jinping; Zhou, Hui; Zhu, Yan; Lan, Yunlong

2009-01-01

To reveal chemical diversify of volatile oils in Houttuynia cordata from major producing areas in China and their genetic basis, lay a foundation for breeding a quality H. cordata variety. The volatile oils in H. cordata from 22 provenances were determined by GC. And the relationship among the peak areas of volatile oils, biological characteristics and RAPD makers were analyzed. There were common and special volatile oils in H. cordata from different provenances. The peak areas of common volatile oils in samples were significantly different. The clustering figure based on the peak areas or the relative peak areas of common volatile oils was almost agreed with the one based on RAPD makers analysis. And the differences in chromatograms could be distinguished according to the biological characteristics. The diversity of volatile oils exists in H. cordata from different provenances which relate with biological characteristics and has genetic basis. H. cordata can be divided into 2 types according to volatile oils, biological characteristics or RAPD marker.

Mineralogy and provenance of clays in miarolitic cavities of the Pikes Peak Batholith, Colorado

USGS Publications Warehouse

Kile, D.E.

2005-01-01

Clay samples from 105 cavities within miarolitic granitic pegmatites throughout the Pikes Peak batholith, in Colorado, were analyzed by powder X-ray diffraction (XRD). Smectite (beidellite), illite, and kaolinite were found within the cavities. Calculation of crystallite-thickness distribution (CTD), mean thickness of the crystallites, and variance in crystallite thickness, as deduced from XRD patterns, allowed a determination of provenance and mode of formation for illite and smectite. Authigenic miarolitic-cavity illite and smectite show lognormal CTDs and larger mean thicknesses of crystallites than do their soil-derived counterparts; non-lognormal illite in a cavity results from mixing of cavity and soil illite. Analysis of mean thickness and thickness variance shows that crystal growth of illite is initiated by a nucleation event of short duration, followed by surface-controlled kinetics. Crystallization of the miarolitic cavity clays is presumed to occur by neoformation from hydrothermal fluids. The assessment of provenance allows a determination of regional and local distributions of clay minerals in miarolitic cavities within the Pikes Peak batholith.

Proven practices for reducing aggressive and noncompliant behaviors exhibited by young children at home and at school.

PubMed

Vanderheyden, A; Witt, J C

2000-10-01

One of the single most powerful predictors of aggressive and noncompliant behaviors exhibited in early childhood is coercive parent-child interaction. Coercive parent-child interaction has been linked to multiple negative outcomes in the lives of children. When children learn to relate to their parents and the world in the context of coercive interaction, they are likely to experience significant deficits in the prosocial skills critical to school success. These children are much more likely to experience school failure and teacher and peer rejection. Further, when noncompliant and aggressive children enter school, they are most frequently exposed to a series of ineffective and increasingly restrictive treatments. Proven strategies exist to teach parents and children prosocial ways of interacting and to address these problems in the classroom, but in many cases these types of services are not easily accessible or routinely available. This paper makes recommendations for identifying effective, proven treatment strategies when practitioners observe coercive parent-child interaction or child noncompliance and aggression.

Evaluation methodology for comparing memory and communication of analytic processes in visual analytics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ragan, Eric D; Goodall, John R

2014-01-01

Provenance tools can help capture and represent the history of analytic processes. In addition to supporting analytic performance, provenance tools can be used to support memory of the process and communication of the steps to others. Objective evaluation methods are needed to evaluate how well provenance tools support analyst s memory and communication of analytic processes. In this paper, we present several methods for the evaluation of process memory, and we discuss the advantages and limitations of each. We discuss methods for determining a baseline process for comparison, and we describe various methods that can be used to elicit processmore » recall, step ordering, and time estimations. Additionally, we discuss methods for conducting quantitative and qualitative analyses of process memory. By organizing possible memory evaluation methods and providing a meta-analysis of the potential benefits and drawbacks of different approaches, this paper can inform study design and encourage objective evaluation of process memory and communication.« less

Molecular extended thermodynamics of rarefied polyatomic gases and wave velocities for increasing number of moments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arima, Takashi, E-mail: tks@stat.nitech.ac.jp; Mentrelli, Andrea, E-mail: andrea.mentrelli@unibo.it; Ruggeri, Tommaso, E-mail: tommaso.ruggeri@unibo.it

Molecular extended thermodynamics of rarefied polyatomic gases is characterized by two hierarchies of equations for moments of a suitable distribution function in which the internal degrees of freedom of a molecule is taken into account. On the basis of physical relevance the truncation orders of the two hierarchies are proven to be not independent on each other, and the closure procedures based on the maximum entropy principle (MEP) and on the entropy principle (EP) are proven to be equivalent. The characteristic velocities of the emerging hyperbolic system of differential equations are compared to those obtained for monatomic gases and themore » lower bound estimate for the maximum equilibrium characteristic velocity established for monatomic gases (characterized by only one hierarchy for moments with truncation order of moments N) by Boillat and Ruggeri (1997) (λ{sub (N)}{sup E,max})/(c{sub 0}) ⩾√(6/5 (N−1/2 )),(c{sub 0}=√(5/3 k/m T)) is proven to hold also for rarefied polyatomic gases independently from the degrees of freedom of a molecule. -- Highlights: •Molecular extended thermodynamics of rarefied polyatomic gases is studied. •The relation between two hierarchies of equations for moments is derived. •The equivalence of maximum entropy principle and entropy principle is proven. •The characteristic velocities are compared to those of monatomic gases. •The lower bound of the maximum characteristic velocity is estimated.« less

Breast cancers missed by screening radiologists can be detected by reading mammograms at a distance.

PubMed

Schreutelkamp, Ineke L; Kwee, Robert M; Veekmans, Peter; Adriaensen, Miraude E A P M

2018-05-03

During locally organized quality assurance evaluation sessions for screening radiologists, we noticed that individual screening radiologists did miss tumours which in our opinion could be detected at a distance. To determine whether tumours missed by individual screening radiologists can be detected at a distance. Twenty-eight screening mammograms of 28 females (mean age 63 years, range 49-73) with a pathologically proven malignant tumour missed by individual screening radiologists were mixed with 56 normal screening mammograms of 56 females (mean age 63 years, range 53-74). This test set was independently assessed by a senior screening radiologist and by a radiology resident without prior training in screening mammography at 1.5 m distance from the screen display. Readers were unaware of the prevalence of pathologically proven malignant tumours in the test set. Primary outcome was whether the reader would recall the woman. The senior screening radiologist recalled 28 of 28 women with a pathologically proven malignant tumour (sensitivity of 100%) and 16 of 56 women without pathology (specificity of 71%). The radiology resident recalled 25 of 28 women with a pathologically proven malignant tumour (sensitivity of 89%) and 10 of 56 women without pathology (specificity of 82%). Some malignant tumours missed by an individual screening radiologist can be detected from 1.5 m distance. Therefore, we recommend that screening radiologists consciously take a distant view before closely evaluating the mammogram in detail.

The accuracy of serum galactomannan assay in diagnosing invasive pulmonary aspergillosis.

PubMed

Sarrafzadeh, Shokooh Azam; Hoseinpoor Rafati, Ali; Ardalan, Maryam; Mansouri, Davood; Tabarsi, Payam; Pourpak, Zahra

2010-09-01

Galactomannan (GM) antigen is an aspergillus specific antigen that is released during the growth phase of invasive aspergillosis. We aimed to find the optimum cutoff and accuracy of serum Galactomannan assay in immunocompromised patients. Immunocompromised patients diagnosed with invasive pulmonary aspergillosis (IPA) based on the European Organization for Research and Treatment of Cancer/Invasive Mycosis Study Group (EORTC/MSG) with three levels of certainty proven, probable and possible, referred for GM antigen measurement at Immunology, Asthma and Allergy Research Institute (IAARI) from 2006 to 2009 and if they met the criteria were enrolled in this study. Totally 49 patients with IPA were enrolled in our study. According to EORTC/MSG, patients categorized into three levels of certainty: They were diagnosed as 'proven' invasive pulmonary aspergillosis 16(32.7%), 'probable' 18(36.7%) and 'possible' 15(30.6%). The most common host risk factor was solid tumors 17(34.7%). The accuracy of Galactomannan assay increased from 0.5 to 2 cutoffs. The optimum sensitivity and specificity obtained at the index cutoff of ≥1.5 for diagnosis of "proven" IPA; which were respectively, 69.2% and 72.2%. Other cutoffs had high variance between sensitivity and specificity for diagnosis of IPA. The calculated cutoff gained by receiver operating characteristic (ROC) analysis for detecting proven IPA was 1.5. Intermediate accuracy of serum GM test in conjunct with clinical findings would help early IPA detection among immunocompromised patients.

Provenance, tectonic setting and source-area weathering of the lower Cambrian sediments of the Parahio valley in the Spiti basin, India

NASA Astrophysics Data System (ADS)

Pandey, Shivani; Parcha, Suraj K.

2017-03-01

The geochemical study of siliciclastic rocks from the Lower Cambrian of Parahio Valley has been studied to describe the provenance, chemical weathering and tectonic setting. The K2O/Al2O3 ratio and positive correlation of Co ( r=0.85), Ni ( r=0.86), Zn ( r=0.82), Rb ( r=0.98) with K2O reflects that the presence of clay minerals control the abundances of these elements and suggests a warm and humid climate for this region. The chondrite normalized REE pattern of the samples is equivalent to upper continental crust, which reflects enriched LREE and flat HREE with negative Eu anomaly. The tectonic setting discriminant diagram log[K2O/Na2O] vs. SiO2; [SiO2/Al2O3] vs. log[K2O/Na2O]; [SiO2/20] - [K2O+Na2O] - [TiO2+Fe2O3+MgO] indicates transitional tectonic setting from an active continental margin to a passive margin. The discriminant function plot indicates quartzose sedimentary provenance, and to some extent, the felsic igneous provenance, derived from weathered granite, gneissic terrain and/or from pre-existing sedimentary terrain. The CIA value indicates low to moderate degree of chemical weathering and the average ICV values suggests immature sediments deposited in tectonically active settings. The A-CN-K diagram indicates that these sediments were generated from source rocks of the upper continental crust.

Quantifying the provenance of aeolian sediments using multiple composite fingerprints

NASA Astrophysics Data System (ADS)

Liu, Benli; Niu, Qinghe; Qu, Jianjun; Zu, Ruiping

2016-09-01

We introduce a new fingerprinting method that uses multiple composite fingerprints for studies of aeolian sediment provenance. We used this method to quantify the provenance of sediments on both sides of the Qinghai-Tibetan Railway (QTR) in the Cuona Lake section of the Tibetan Plateau (TP), in an environment characterized by aeolian and fluvial interactions. The method involves repeatedly solving a linear mixing model based on mass conservation; the model is not limited to spatial scale or transport types and uses all the tracer groups that passed the range check, Kruskal-Wallis H-test, and a strict analytical solution screening. The proportional estimates that result from using different composite fingerprints are highly variable; however, the average of these fingerprints has a greater accuracy and certainty than any single fingerprint. The results show that sand from the lake beach, hilly surface, and gullies contribute, respectively, 48%, 31% and 21% to the western railway sediments and 43%, 33% and 24% to the eastern railway sediments. The difference between contributions from various sources on either side of the railway, which may increase in the future, was clearly related to variations in local transport characteristics, a conclusion that is supported by grain size analysis. The construction of the QTR changed the local cycling of materials, and the difference in provenance between the sediments that are separated by the railway reflects the changed sedimentary conditions on either side of the railway. The effectiveness of this method suggests that it will be useful in other studies of aeolian sediments.

Chronic Q Fever in the Netherlands 5 Years after the Start of the Q Fever Epidemic: Results from the Dutch Chronic Q Fever Database

PubMed Central

Delsing, Corine E.; Groenwold, Rolf H. H.; Wegdam-Blans, Marjolijn C. A.; Bleeker-Rovers, Chantal P.; de Jager-Leclercq, Monique G. L.; Hoepelman, Andy I. M.; van Kasteren, Marjo E.; Buijs, Jacqueline; Renders, Nicole H. M.; Nabuurs-Franssen, Marrigje H.; Oosterheert, Jan Jelrik; Wever, Peter C.

2014-01-01

Coxiella burnetii causes Q fever, a zoonosis, which has acute and chronic manifestations. From 2007 to 2010, the Netherlands experienced a large Q fever outbreak, which has offered a unique opportunity to analyze chronic Q fever cases. In an observational cohort study, baseline characteristics and clinical characteristics, as well as mortality, of patients with proven, probable, or possible chronic Q fever in the Netherlands, were analyzed. In total, 284 chronic Q fever patients were identified, of which 151 (53.7%) had proven, 64 (22.5%) probable, and 69 (24.3%) possible chronic Q fever. Among proven and probable chronic Q fever patients, vascular infection focus (56.7%) was more prevalent than endocarditis (34.9%). An acute Q fever episode was recalled by 27.0% of the patients. The all-cause mortality rate was 19.1%, while the chronic Q fever-related mortality rate was 13.0%, with mortality rates of 9.3% among endocarditis patients and 18% among patients with a vascular focus of infection. Increasing age (P = 0.004 and 0.010), proven chronic Q fever (P = 0.020 and 0.002), vascular chronic Q fever (P = 0.024 and 0.005), acute presentation with chronic Q fever (P = 0.002 and P < 0.001), and surgical treatment of chronic Q fever (P = 0.025 and P < 0.001) were significantly associated with all-cause mortality and chronic Q fever-related mortality, respectively. PMID:24599987

Retrospective and statistical analysis of breeding management on the Italian Heavy Draught Horse breed.

PubMed

Mantovani, R; Sartori, C; Pigozzi, G

2013-07-01

This study investigated some aspects of breeding management in the Italian Heavy Draught Horse breed, aiming at improving its efficiency at stud farm level. A first aim was to evaluate the risk of unsuccessful reproduction in mares after an early (3 years) or normal (4 years) age at first foaling, in interaction with different stud rearing systems. A second objective was the examination of the mean time length in which young 2-year-old stallions maintain a genetic superiority on older proven stallions, identifying a 'genetic lifespan' in which young stallions can be safely used for reducing the cost of services. Reproductive performance at first and second foaling of 1513 mares were used. Mares had a normal first foal at 3 (n = 745) or 4 years of age (n = 768) in stud farms on the basis of stable (n = 488), feral (n = 345) or semi-feral (n = 680) rearing systems. Logistic regression analysis was performed by modeling the risk of unsuccessful reproduction in the subsequent season (i.e., results at second foaling), as affected by the interaction of age at first foaling × rearing system (six classes). Genetic lifespan of young stallions was estimated by regressing the least square means from a mixed model analysis for repeated measures of individual differences in 'total merit' estimated breeding values (EBVs) between young stallions (mean no. of 45/year) and the mean EBV of all proven stallions in a given year of genetic evaluation (mean no. of 483/year). Young stallions born between 1999 and 2005 were used, following each generation (i.e., birth year) from 2 to 7 subsequent yearly genetic evaluations. In comparison with the best reproductive success of second foaling at 4 years in stable systems, the greatest risk of unsuccessful reproduction was at 3 years in feral (+167%) and 3 years in semi-feral conditions (+91%). Young stallions showed a 0.50 s.d. greater EBV at the first evaluation than proven stallions, with a mean annual decrease in EBV of 0.07 s.d./year on proven stallions. Optimal breeding management could be obtained in stud farms by limiting foaling at 3 years, particularly in feral and semi-feral rearing systems, and using young stallions for 3 to 4 years to maintain a perceptible selection differential with older proven stallions and to reduce cost of services. Later, the selection differential with proven stallions become less consistent and genetic improvement could be slowed down.

Provenance for actionable data products and indicators in marine ecosystem assessments

NASA Astrophysics Data System (ADS)

Beaulieu, S. E.; Maffei, A. R.; Fox, P. A.; West, P.; Di Stefano, M.; Hare, J. A.; Fogarty, M.

2013-12-01

Ecosystem-based management of Large Marine Ecosystems (LMEs) involves the sharing of data and information products among a diverse set of stakeholders - from environmental and fisheries scientists to policy makers, commercial entities, nonprofits, and the public. Often the data products that are shared have resulted from a number of processing steps and may also have involved the combination of a number of data sources. The traceability from an actionable data product or indicator back to its original data source(s) is important not just for trust and understanding of each final data product, but also to compare with similar data products produced by the different stakeholder groups. For a data product to be traceable, its provenance, i.e., lineage or history, must be recorded and preferably machine-readable. We are collaborating on a use case to develop a software framework for the bi-annual Ecosystem Status Report (ESR) for the U.S. Northeast Shelf LME. The ESR presents indicators of ecosystem status including climate forcing, primary and secondary production, anthropogenic factors, and integrated ecosystem measures. Our software framework retrieves data, conducts standard analyses, provides iterative and interactive visualization, and generates final graphics for the ESR. The specific process for each data and information product is updated in a metadata template, including data source, code versioning, attribution, and related contextual information suitable for traceability, repeatability, explanation, verification, and validation. Here we present the use of standard metadata for provenance for data products in the ESR, in particular the W3C provenance (PROV) family of specifications, including the PROV-O ontology which maps the PROV data model to RDF. We are also exploring extensions to PROV-O in development (e.g., PROV-ES for Earth Science Data Systems, D-PROV for workflow structure). To associate data products in the ESR to domain-specific ontologies we are also exploring the Global Change Information System ontology, BCO-DMO Ocean Data Ontology, and other relevant published ontologies (e.g., Integrated Ocean Observing System ontology). We are also using the mapping of ISO 19115-2 Lineage to PROV-O and comparing both strategies for traceability of marine ecosystem indicators. The use of standard metadata for provenance for data products in the ESR will enable the transparency, and ultimately reproducibility, endorsed in the recent NOAA Information Quality Guidelines. Semantically enabling not only the provenance but also the data products will yield a better understanding of the connected web of relationships between marine ecosystem and ocean health assessments conducted by different stakeholder groups.

Leapfrogging of tree species provenances? Interaction of microclimate and genetics on upward shifts in tree species' range limits

NASA Astrophysics Data System (ADS)

Reinhardt, K.; Castanha, C.; Germino, M. J.; Kueppers, L. M.

2011-12-01

The elevation limit of tree growth (alpine treeline) is considered to be constrained by environmental (i.e., thermal) and genetic (i.e., inability to adapt to climatic conditions) limitations to growth. Warming conditions due to climate change are predicted to cause upward shifts in the elevation of alpine treelines, through relief of cold-induced physiological limitations on seedling recruitment beyond current treeline boundaries. To determine how genetics and climate may interact to affect seedling establishment, we transplanted recently germinated seedlings from high- and low-elevation provenances (HI and LO, respectively) of Pinus flexilis in common gardens arrayed along an elevation and canopy gradient from subalpine forest into the alpine zone at Niwot Ridge, CO. We compared differences in microclimate and seedling ecophysiology among sites and between provenances. During the first summer of growth, frequently cloudy skies resulted in similar solar radiation incidence and air and soil temperatures among sites, despite nearly a 500 m-span in elevation across all sites. Preliminary findings suggest that survival of seedlings was similar between the lowest and highest elevations, with greater survival of LO (60%) compared to HI (40%) seedlings at each of these sites. Photosynthesis, carbon balance (photosynthesis/respiration), and conductance increased more than 2X with elevation for both provenances, and were 35-77% greater in LO seedlings compared to HI seedlings. There were no differences in dark-adapted chlorophyll fluorescence (Fv/Fm) among sites or between provenances. However, in a common-garden study at low elevation, we observed no differences in carbon or water relations between two naturally-germinated mitochondrial haplotypes of P. flexilis (of narrow and wide-ranging distributions). We did observe water-related thresholds on seedling carbon balance and survival that occurred when soil volumetric water content dropped below 10% and seedling water potentials went below -4 MPa. Our preliminary results suggest that for high-elevation conifer seedlings such as P. flexilis: 1) individuals can survive and even have enhanced physiological performance at and above treeline when/where clouds or other conditions minimize factors like cold-induced photoinhibition; 2) in the field, provenances selected for aboveground growth may out-perform those selected for stress-resistance in the absence of harsh climatic conditions, even well above the species' range limits in the alpine; 3) water, and not thermal, limitations might explain treeline altitude in this particular mountain range; 4) forest genetics may be important to understanding and managing species' range adjustments due to climate change.

On the Asymptotic Stability of Steady Flows with Nonzero Flux in Two-Dimensional Exterior Domains

NASA Astrophysics Data System (ADS)

Guillod, Julien

2017-05-01

The Navier-Stokes equations in a two-dimensional exterior domain are considered. The asymptotic stability of stationary solutions satisfying a general hypothesis is proven under any L 2-perturbation. In particular, the general hypothesis is valid if the steady solution is the sum of the critically decaying flux carrier with flux {| Φ | < 2 π} and a small subcritically decaying term. Under the central symmetry assumption, the general hypothesis is also proven for any critically decaying steady solutions under a suitable smallness condition.

Development of a statistically proven injection molding method for reaction bonded silicon nitride, sintering reaction bonded silicon nitride, and sintered silicon nitride

NASA Astrophysics Data System (ADS)

Steiner, Matthias

A statistically proven, series injection molding technique for ceramic components was developed for the construction of engines and gas turbines. The flow behavior of silicon injection-molding materials was characterized and improved. Hot-isostatic-pressing reaction bonded silicon nitride (HIPRBSN) was developed. A nondestructive component evaluation method was developed. An injection molding line for HIPRBSN engine components precombustion chamber, flame spreader, and valve guide was developed. This line allows the production of small series for engine tests.

On the Daubechies-based wavelet differentiation matrix

NASA Technical Reports Server (NTRS)

Jameson, Leland

1993-01-01

The differentiation matrix for a Daubechies-based wavelet basis is constructed and superconvergence is proven. That is, it will be proven that under the assumption of periodic boundary conditions that the differentiation matrix is accurate of order 2M, even though the approximation subspace can represent exactly only polynomials up to degree M-1, where M is the number of vanishing moments of the associated wavelet. It is illustrated that Daubechies-based wavelet methods are equivalent to finite difference methods with grid refinement in regions of the domain where small-scale structure is present.

The Apollo 16 Mare Component: Petrography, Geochemistry, and Provenance

NASA Technical Reports Server (NTRS)

Zeigler, R. A.; Haskin, L. A.; Korotev, R. L.; Jolliff, B. L.; Gillis, J. J.

2003-01-01

The A16 (Apollo16) site in the lunar nearside highlands is 220 km from the nearest mare. Thus it is no surprise that mare basalt samples are uncommon at the site. Here, we present the petrography and geochemistry of 5 new mare basalt samples found at the A16 site. We also discuss possible provenances of all A16 mare basalt samples using high-resolution global data for the distribution of Fe and Ti on the lunar surface derived from Clementine UV-VIS data [1-2].

QEMSCAN+LA-ICP-MS: a 'big data' generator for sedimentary provenance analysis

NASA Astrophysics Data System (ADS)

Vermeesch, Pieter; Rittner, Martin; Garzanti, Eduardo

2017-04-01

Sedimentary provenance may be traced by 'fingerprinting' sediments with chemical, mineralogical or isotopic means. Normally, each of these provenance proxies is characterised on a separate aliquot of the same sample. For example, the chemical composition of the bulk sample may be analysed by X-ray fluorescence (XRF) on one aliquot, framework petrography on another, heavy mineral analysis on a density separate of a third split, and zircon U-Pb dating on a further density separate of the heavy mineral fraction. The labour intensity of this procedure holds back the widespread application of multi-method provenance studies. We here present a new method to solve this problem and avoid mineral separation by coupling a QEMSCAN electron microscope to an LA-ICP-MS instrument and thereby generate all four aforementioned provenance datasets as part of the same workflow. Given a polished hand specimen, a petrographic thin section, or a grain mount, the QEMSCAN+LA-ICP-MS method produces chemical and mineralogical maps from which the X-Y coordinates of the datable mineral are extracted. These coordinates are subsequently passed on to the laser ablation system for isotopic and, hence, geochronological analysis. In the process of finding all the zircons in a sediment grain mount, the QEMSCAN yields the compositional and mineralogical compositions as byproducts. We have applied the new QEMSCAN+LA-ICP-MS instrument suite to over 100 samples from three large sediment routing systems: (1) the Tigris-Euphrates river catchments and Rub' Al Khali desert in Arabia; (2) the Nile catchment in northeast Africa and (3) desert and beach sands between the Orange and Congo rivers in southwest Africa. These studies reveal (1) that Rub' Al Khali sand is predominantly derived from the Arabian Shield and not from Mesopotamia; (2) that the Blue Nile is the principal source of Nile sand; and (3) that Orange River sand is carried northward by longshore drift nearly 1,800km from South Africa to southern Angola. In addition to these geological findings, the first applications of QEMSCAN+LA-ICP-MS highlight some key advantages of the new workflow over traditional provenance analysis: (a) the new method not only increases sample throughput but also improves data quality by reducing significant biases associated with mineral separation and grain selection; (b) the three case studies highlight the importance of zircon 'fertility' for interpreting detrital zircon U-Pb datasets, and the ability of QEMSCAN to quantify this crucial parameter semi-automatically; (c) QEMSCAN+LA-ICP-MS provides an opportunity to add textural information to detrital geochronology and, for example, quantify possible grain-size dependence of U-Pb age distributions. But besides these advantages, the three case studies also reveal a number of limitations: (a) mineral identification by QEMSCAN is not as reliable as commonly achieved by human observers; (b) heavy mineral compositions obtained by QEMSCAN cannot easily be compared with conventional point counting data; and (c) apparent grain sizes can be greatly affected by polishing artefacts. In conclusion, QEMSCAN+LA-ICP-MS is a transformational new technique for provenance analysis but should be used with caution, in combination with conventional petrographic and heavy mineral techniques.

How do you assign persistent identifiers to extracts from large, complex, dynamic data sets that underpin scholarly publications?

NASA Astrophysics Data System (ADS)

Wyborn, Lesley; Car, Nicholas; Evans, Benjamin; Klump, Jens

2016-04-01

Persistent identifiers in the form of a Digital Object Identifier (DOI) are becoming more mainstream, assigned at both the collection and dataset level. For static datasets, this is a relatively straight-forward matter. However, many new data collections are dynamic, with new data being appended, models and derivative products being revised with new data, or the data itself revised as processing methods are improved. Further, because data collections are becoming accessible as services, researchers can log in and dynamically create user-defined subsets for specific research projects: they also can easily mix and match data from multiple collections, each of which can have a complex history. Inevitably extracts from such dynamic data sets underpin scholarly publications, and this presents new challenges. The National Computational Infrastructure (NCI) has been experiencing and making progress towards addressing these issues. The NCI is large node of the Research Data Services initiative (RDS) of the Australian Government's research infrastructure, which currently makes available over 10 PBytes of priority research collections, ranging from geosciences, geophysics, environment, and climate, through to astronomy, bioinformatics, and social sciences. Data are replicated to, or are produced at, NCI and then processed there to higher-level data products or directly analysed. Individual datasets range from multi-petabyte computational models and large volume raster arrays, down to gigabyte size, ultra-high resolution datasets. To facilitate access, maximise reuse and enable integration across the disciplines, datasets have been organized on a platform called the National Environmental Research Data Interoperability Platform (NERDIP). Combined, the NERDIP data collections form a rich and diverse asset for researchers: their co-location and standardization optimises the value of existing data, and forms a new resource to underpin data-intensive Science. New publication procedures require that a persistent identifier (DOI) be provided for the dataset that underpins the publication. Being able to produce these for data extracts from the NCI data node using only DOIs is proving difficult: preserving a copy of each data extract is not possible due to data scale. A proposal is for researchers to use workflows that capture the provenance of each data extraction, including metadata (e.g., version of the dataset used, the query and time of extraction). In parallel, NCI is now working with the NERDIP dataset providers to ensure that the provenance of data publication is also captured in provenance systems including references to previous versions and a history of data appended or modified. This proposed solution would require an enhancement to new scholarly publication procedures whereby the reference to underlying dataset to a scholarly publication would be the persistent identifier of the provenance workflow that created the data extract. In turn, the provenance workflow would itself link to a series of persistent identifiers that, at a minimum, provide complete dataset production transparency and, if required, would facilitate reconstruction of the dataset. Such a solution will require strict adherence to design patterns for provenance representation to ensure that the provenance representation of the workflow does indeed contain information required to deliver dataset generation transparency and a pathway to reconstruction.

DNA barcode and identification of the varieties and provenances of Taiwan's domestic and imported made teas using ribosomal internal transcribed spacer 2 sequences.

PubMed

Lee, Shih-Chieh; Wang, Chia-Hsiang; Yen, Cheng-En; Chang, Chieh

2017-04-01

The major aim of made tea identification is to identify the variety and provenance of the tea plant. The present experiment used 113 tea plants [Camellia sinensis (L.) O. Kuntze] housed at the Tea Research and Extension Substation, from which 113 internal transcribed spacer 2 (ITS2) fragments, 104 trnL intron, and 98 trnL-trnF intergenic sequence region DNA sequences were successfully sequenced. The similarity of the ITS2 nucleotide sequences between tea plants housed at the Tea Research and Extension Substation was 0.379-0.994. In this polymerase chain reaction-amplified noncoding region, no varieties possessed identical sequences. Compared with the trnL intron and trnL-trnF intergenic sequence fragments of chloroplast cpDNA, the proportion of ITS2 nucleotide sequence variation was large and is more suitable for establishing a DNA barcode database to identify tea plant varieties. After establishing the database, 30 imported teas and 35 domestic made teas were used in this model system to explore the feasibility of using ITS2 sequences to identify the varieties and provenances of made teas. A phylogenetic tree was constructed using ITS2 sequences with the unweighted pair group method with arithmetic mean, which indicated that the same variety of tea plant is likely to be successfully categorized into one cluster, but contamination from other tea plants was also detected. This result provides molecular evidence that the similarity between important tea varieties in Taiwan remains high. We suggest a direct, wide collection of made tea and original samples of tea plants to establish an ITS2 sequence molecular barcode identification database to identify the varieties and provenances of tea plants. The DNA barcode comparison method can satisfy the need for a rapid, low-cost, frontline differentiation of the large amount of made teas from Taiwan and abroad, and can provide molecular evidence of their varieties and provenances. Copyright © 2016. Published by Elsevier B.V.

Identifying Provenance of Archaean Basal Conglomerates: An Evidence from Sigegudda and Bababudan Conglomerate Quartzites, India

NASA Astrophysics Data System (ADS)

Mitra, A.; Dey, S.

2017-12-01

Geochemical characteristics of clastic sedimentary rocks deposited and later preserved in ancient supracrustal sequences of Archaean terrain are competent representation of their source rocks in provenance. These rocks usually sample a wide geographic area and bear signature of subsequently destroyed and dismembered terrains. In this study the quartz pebble conglomerate-quartz sandstone association of Sigegudda and Bababudan belt of western Dharwar craton (WDC), Southern India have been studied to understand the nature of their provenance. Both Sigegudda and Bababudan belt represent younger (2.8-2.6 Ga) greenstone sequences of WDC. They start with a prominent band of conglomerate-quartzite lying over Palaeo to Meso Archaean Peninsular Gneiss (3.35-3.29 Ga) with older Sargur greentone (3.35-3.28 Ga) enclaves along an unconformity. Here, we present a comprehensive provenance (mainly source rock characterization) study of major and trace element composition of low to moderately metamorphosed basal siliciclastics of the younger greenstone sequences of WDC. Chemically they are enriched in Th, U, HFSE (Hf, Nb, Zr) and depleted in Sc, Co, Cr and Eu content with elevated La/Sc and Th/Sc values depicting a differentiated felsic source. This is further supported by fractionated LREE (10.64 - 14.66), significant negative Eu anomaly (0.67 - 0.55) and nearly flat HREE indicating granitoid rocks as source. In La-Th-Cr/100 and La-Th-Sc triangular diagram, quartz arenite field overlap with the Peninsular Gneiss and plotted far away from the mafic-ultramafics of Sargur. The chemical index of alteration (CIA) values of arenites of Sigegudda (71) and Bababudan (75), Peninsular Gneisses (avg-50) and Sargur group (avg-30) implies their derivation from the underlying gneisses associated with a prolonged weathering. The presence of a thick conglomerate-quartz sandstone association with differently sized quartz in their framework and matrix, depicts the development of a stable craton in WDC during the Mesoarchaean. The geochemical results of conglomerate - quartzites along with their supported petrography strongly recommend the Peninsular gneiss as their provenance with prolonged erosion and sediment recycling.

Using Sediment Provenance to Study Ice Streams in the Weddell Sea Embayment of Antarctica

NASA Astrophysics Data System (ADS)

Hemming, S. R.; Williams, T.; Boswell, S.; Licht, K.; Agrios, L.; Brachfeld, S. A.; van de Flierdt, T.; Kuhn, G.; Hillenbrand, C. D.; Zhai, X.

2016-12-01

The geochemical and geochronological fingerprint of rock debris eroded and carried by ice streams may be used to identify the provenance of iceberg-rafted debris (IRD) in the marine sediment record. During deglacial times it has been shown that there is an increase in IRD accumulation in marine sediments underlying the western limb of the Weddell Gyre. We seek to find the provenance of this IRD, identify the ice streams contributing to the IRD load, and interpret the geographic sequence of ice sheet retreat in the Weddell Sea embayment for the last three deglaciations. In December 2014 we conducted fieldwork to collect samples of rock and sediment debris carried by three of the major ice streams draining the Weddell Sea embayment: the Foundation Ice Stream, the Academy Glacier, and the Recovery Glacier. We sampled both modern moraines at the edges of the ice streams and older till on hillsides next to the ice streams. In addition to rocks representing the geology of local outcrops, we found that each of the three ice streams carries a characteristic set of erratic lithologies from further upstream, giving clues to the geology hidden under the ice sheet. Downstream, subglacial till and proximal glaciomarine sediment from existing core sites located at the edge of the Filchner and Ronne Ice Shelves, collected on past expeditions of the RV Polarstern, characterize the geochemical and geochronological fingerprint along ice flow lines extending from the ice streams. Finally, two deep-water RV Polarstern sites contain a continuous record of IRD sourced from the set of Weddell embayment ice streams over the last few glacial cycles. Here we present new 40Ar/39Ar hornblende and biotite thermochronological data from individual mineral grains, K-Ar from the silt fraction, and U-Pb zircon geochronology from the onshore tills and offshore sediments. Using this data we will discuss provenance matching between the IRD and the ice streams, and the possibilities for using provenance to understand ice sheet dynamics over the course of glacial cycles.

Intraspecific Variation in Wood Anatomical, Hydraulic, and Foliar Traits in Ten European Beech Provenances Differing in Growth Yield

PubMed Central

Hajek, Peter; Kurjak, Daniel; von Wühlisch, Georg; Delzon, Sylvain; Schuldt, Bernhard

2016-01-01

In angiosperms, many studies have described the inter-specific variability of hydraulic-related traits and little is known at the intra-specific level. This information is however mandatory to assess the adaptive capacities of tree populations in the context of increasing drought frequency and severity. Ten 20-year old European beech (Fagus sylvatica L.) provenances representing the entire distribution range throughout Europe and differing significantly in aboveground biomass increment (ABI) by a factor of up to four were investigated for branch wood anatomical, hydraulic, and foliar traits in a provenance trial located in Northern Europe. We quantified to which extend xylem hydraulic and leaf traits are under genetic control and tested whether the xylem hydraulic properties (hydraulic efficiency and safety) trades off with yield and wood anatomical and leaf traits. Our results showed that only three out of 22 investigated ecophysiological traits showed significant genetic differentiations between provenances, namely vessel density (VD), the xylem pressure causing 88% loss of hydraulic conductance and mean leaf size. Depending of the ecophysiological traits measured, genetic differentiation between populations explained 0–14% of total phenotypic variation, while intra-population variability was higher than inter-population variability. Most wood anatomical traits and some foliar traits were additionally related to the climate of provenance origin. The lumen to sapwood area ratio, vessel diameter, theoretical specific conductivity and theoretical leaf-specific conductivity as well as the C:N-ratio increased with climatic aridity at the place of origin while the carbon isotope signature (δ13C) decreased. Contrary to our assumption, none of the wood anatomical traits were related to embolism resistance but were strong determinants of hydraulic efficiency. Although ABI was associated with both VD and δ13C, both hydraulic efficiency and embolism resistance were unrelated, disproving the assumed trade-off between hydraulic efficiency and safety. European beech seems to compensate increasing water stress with growing size mainly by adjusting vessel number and not vessel diameter. In conclusion, European beech has a high potential capacity to cope with climate change due to the high degree of intra-population genetic variability. PMID:27379112

Intraspecific Variation in Wood Anatomical, Hydraulic, and Foliar Traits in Ten European Beech Provenances Differing in Growth Yield.

PubMed

Hajek, Peter; Kurjak, Daniel; von Wühlisch, Georg; Delzon, Sylvain; Schuldt, Bernhard

2016-01-01

In angiosperms, many studies have described the inter-specific variability of hydraulic-related traits and little is known at the intra-specific level. This information is however mandatory to assess the adaptive capacities of tree populations in the context of increasing drought frequency and severity. Ten 20-year old European beech (Fagus sylvatica L.) provenances representing the entire distribution range throughout Europe and differing significantly in aboveground biomass increment (ABI) by a factor of up to four were investigated for branch wood anatomical, hydraulic, and foliar traits in a provenance trial located in Northern Europe. We quantified to which extend xylem hydraulic and leaf traits are under genetic control and tested whether the xylem hydraulic properties (hydraulic efficiency and safety) trades off with yield and wood anatomical and leaf traits. Our results showed that only three out of 22 investigated ecophysiological traits showed significant genetic differentiations between provenances, namely vessel density (VD), the xylem pressure causing 88% loss of hydraulic conductance and mean leaf size. Depending of the ecophysiological traits measured, genetic differentiation between populations explained 0-14% of total phenotypic variation, while intra-population variability was higher than inter-population variability. Most wood anatomical traits and some foliar traits were additionally related to the climate of provenance origin. The lumen to sapwood area ratio, vessel diameter, theoretical specific conductivity and theoretical leaf-specific conductivity as well as the C:N-ratio increased with climatic aridity at the place of origin while the carbon isotope signature (δ(13)C) decreased. Contrary to our assumption, none of the wood anatomical traits were related to embolism resistance but were strong determinants of hydraulic efficiency. Although ABI was associated with both VD and δ(13)C, both hydraulic efficiency and embolism resistance were unrelated, disproving the assumed trade-off between hydraulic efficiency and safety. European beech seems to compensate increasing water stress with growing size mainly by adjusting vessel number and not vessel diameter. In conclusion, European beech has a high potential capacity to cope with climate change due to the high degree of intra-population genetic variability.

Changing Dust Provenance to the South Atlantic Since the Last Glacial Maximum and Implications for the Southern Hemisphere Wind Belts

NASA Astrophysics Data System (ADS)

Franzese, A. M.; Goldstein, S. L.; Hemming, S. R.

2017-12-01

The Southern Hemisphere Westerly Winds are known to be important for climate due to their effects on the global carbon cycle and on the global thermohaline circulation (THC). Numerous proxy records have been interpreted to indicate significant glacial to interglacial changes in the SHWW. There is no clear consensus regarding their strength and position during the Last Glacial Maximum (LGM), though most observations are consistent with an equatorward displacement of the glacial wind belts. We test this hypothesis using geochemical provenance measurements of deep-sea sediments deposited along the Mid-Atlantic Ridge between 24°S and 37°S. In the central South Atlantic, dust can be delivered from South America via the Westerlies, or from Africa via the Trade Winds. The dust sources on South America and Africa have very different geochemical signatures, making it possible to distinguish between eolian transport via the Westerlies vs. the Trade Winds. Any northward shift in the Southern Hemisphere Westerlies should increase the northward extent of a South American provenance in sediments dominated by eolian sources. We measured major and trace element concentrations, and radiogenic isotopes of Ar, Sr, Nd, and Pb on the <5 μm lithogenic sediments from a latitudinal transect of cores along the flanks of the Mid-Atlantic Ridge. In general, the data point to an older continental provenance for the northernmost sites, and a much younger provenance for the southernmost sites, consistent with western Africa as the primary source of sediment in the north, and South American sediments being delivered to the south. Glacial sediments display a clear compositional boundary near 30°S, which likely reflects the boundary between the Westerlies and the Trade Winds. The data are therefore not consistent with northward shifted wind belts at the LGM. The observed variations in terrigenous sediment composition at these sites may, however, be consistent with an equatorward displacement of the SHWW through the deglaciation. The results may also point to changes in the continental source regions supplying dust to the atmosphere as the glaciers retreated.

Heritability and quantitative genetic divergence of serotiny, a fire-persistence plant trait

PubMed Central

Hernández-Serrano, Ana; Verdú, Miguel; Santos-del-Blanco, Luís; Climent, José; González-Martínez, Santiago C.; Pausas, Juli G.

2014-01-01

Background and Aims Although it is well known that fire acts as a selective pressure shaping plant phenotypes, there are no quantitative estimates of the heritability of any trait related to plant persistence under recurrent fires, such as serotiny. In this study, the heritability of serotiny in Pinus halepensis is calculated, and an evaluation is made as to whether fire has left a selection signature on the level of serotiny among populations by comparing the genetic divergence of serotiny with the expected divergence of neutral molecular markers (QST–FST comparison). Methods A common garden of P. halepensis was used, located in inland Spain and composed of 145 open-pollinated families from 29 provenances covering the entire natural range of P. halepensis in the Iberian Peninsula and Balearic Islands. Narrow-sense heritability (h2) and quantitative genetic differentiation among populations for serotiny (QST) were estimated by means of an ‘animal model’ fitted by Bayesian inference. In order to determine whether genetic differentiation for serotiny is the result of differential natural selection, QST estimates for serotiny were compared with FST estimates obtained from allozyme data. Finally, a test was made of whether levels of serotiny in the different provenances were related to different fire regimes, using summer rainfall as a proxy for fire regime in each provenance. Key Results Serotiny showed a significant narrow-sense heritability (h2) of 0·20 (credible interval 0·09–0·40). Quantitative genetic differentiation among provenances for serotiny (QST = 0·44) was significantly higher than expected under a neutral process (FST = 0·12), suggesting adaptive differentiation. A significant negative relationship was found between the serotiny level of trees in the common garden and summer rainfall of their provenance sites. Conclusions Serotiny is a heritable trait in P. halepensis, and selection acts on it, giving rise to contrasting serotiny levels among populations depending on the fire regime, and supporting the role of fire in generating genetic divergence for adaptive traits. PMID:25008363

Natural Gas Value-Chain and Network Assessments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kobos, Peter H.; Outkin, Alexander V.; Beyeler, Walter E.

2015-09-01

The current expansion of natural gas (NG) development in the United States requires an understanding of how this change will affect the natural gas industry, downstream consumers, and economic growth in order to promote effective planning and policy development. The impact of this expansion may propagate through the NG system and US economy via changes in manufacturing, electric power generation, transportation, commerce, and increased exports of liquefied natural gas. We conceptualize this problem as supply shock propagation that pushes the NG system and the economy away from its current state of infrastructure development and level of natural gas use. Tomore » illustrate this, the project developed two core modeling approaches. The first is an Agent-Based Modeling (ABM) approach which addresses shock propagation throughout the existing natural gas distribution system. The second approach uses a System Dynamics-based model to illustrate the feedback mechanisms related to finding new supplies of natural gas - notably shale gas - and how those mechanisms affect exploration investments in the natural gas market with respect to proven reserves. The ABM illustrates several stylized scenarios of large liquefied natural gas (LNG) exports from the U.S. The ABM preliminary results demonstrate that such scenario is likely to have substantial effects on NG prices and on pipeline capacity utilization. Our preliminary results indicate that the price of natural gas in the U.S. may rise by about 50% when the LNG exports represent 15% of the system-wide demand. The main findings of the System Dynamics model indicate that proven reserves for coalbed methane, conventional gas and now shale gas can be adequately modeled based on a combination of geologic, economic and technology-based variables. A base case scenario matches historical proven reserves data for these three types of natural gas. An environmental scenario, based on implementing a $50/tonne CO 2 tax results in less proven reserves being developed in the coming years while demand may decrease in the absence of acceptable substitutes, incentives or changes in consumer behavior. An increase in demand of 25% increases proven reserves being developed by a very small amount by the end of the forecast period of 2025.« less

Abrupt Late Holocene Shift in Atmospheric Circulation Recorded by Mineral Dust in the Siple Dome Ice Core, Antarctica

NASA Astrophysics Data System (ADS)

Koffman, B. G.; Goldstein, S. L.; Kaplan, M. R.; Winckler, G.; Bory, A. J. M.; Biscaye, P.

2015-12-01

Atmospheric dust directly influences Earth's climate by altering the radiative balance and by depositing micronutrients in the surface ocean, affecting global biogeochemical cycling. In addition, mineral dust particles provide observational evidence constraining past atmospheric circulation patterns. Because dust can originate from both local and distant terrestrial sources, knowledge of dust provenance can substantially inform our understanding of past climate history, atmospheric transport pathways, and differences in aerosol characteristics between glacial and interglacial climate states. Dust provenance information from Antarctic ice cores has until now been limited to sites in East Antarctica. Here we present some of the first provenance data from West Antarctica. We use Sr-Nd isotopes to characterize dust extracted from late Holocene ice (~1000-1800 C.E.) from the Siple Dome ice core. The data form a tight array in Sr-Nd isotope space, with 87Sr/86Sr ranging between ~0.7087 and 0.7102, and ɛNd ranging between ~ -7 and -16. This combination is unique for Antarctica, with low Nd and low Sr isotope ratios compared to high-elevation East Antarctic sites, requiring a dust source from ancient (Archean to early Proterozoic) and unweathered continental crust, which mixes with young volcanic material. Both components are likely sourced from Antarctica. We also observe significant, systematic variability in Sr and Nd isotopic signatures through time, reflecting changes in the mixing ratio of these sources, and hypothesize that these changes are driven by shifts in circulation patterns. A large change occurs over about 10 years at ca. 1125 C.E. (ΔɛNd = +3 and Δ87Sr/86Sr = -0.0014). This shift coincides with changes in climate proxies in Southern Hemisphere paleoclimate records reflecting variability in the Westerlies. We therefore interpret the shift in dust provenance at Siple Dome to be related to larger-scale circulation changes. In general, the observed shifts in the particle source signatures indicate that dust transport pathways to and around the West Antarctic Ice Sheet are highly responsive to perturbations in atmospheric circulation, and can record rapid shifts in provenance.

Providing traceability for neuroimaging analyses.

PubMed

McClatchey, Richard; Branson, Andrew; Anjum, Ashiq; Bloodsworth, Peter; Habib, Irfan; Munir, Kamran; Shamdasani, Jetendr; Soomro, Kamran

2013-09-01

With the increasingly digital nature of biomedical data and as the complexity of analyses in medical research increases, the need for accurate information capture, traceability and accessibility has become crucial to medical researchers in the pursuance of their research goals. Grid- or Cloud-based technologies, often based on so-called Service Oriented Architectures (SOA), are increasingly being seen as viable solutions for managing distributed data and algorithms in the bio-medical domain. For neuroscientific analyses, especially those centred on complex image analysis, traceability of processes and datasets is essential but up to now this has not been captured in a manner that facilitates collaborative study. Few examples exist, of deployed medical systems based on Grids that provide the traceability of research data needed to facilitate complex analyses and none have been evaluated in practice. Over the past decade, we have been working with mammographers, paediatricians and neuroscientists in three generations of projects to provide the data management and provenance services now required for 21st century medical research. This paper outlines the finding of a requirements study and a resulting system architecture for the production of services to support neuroscientific studies of biomarkers for Alzheimer's disease. The paper proposes a software infrastructure and services that provide the foundation for such support. It introduces the use of the CRISTAL software to provide provenance management as one of a number of services delivered on a SOA, deployed to manage neuroimaging projects that have been studying biomarkers for Alzheimer's disease. In the neuGRID and N4U projects a Provenance Service has been delivered that captures and reconstructs the workflow information needed to facilitate researchers in conducting neuroimaging analyses. The software enables neuroscientists to track the evolution of workflows and datasets. It also tracks the outcomes of various analyses and provides provenance traceability throughout the lifecycle of their studies. As the Provenance Service has been designed to be generic it can be applied across the medical domain as a reusable tool for supporting medical researchers thus providing communities of researchers for the first time with the necessary tools to conduct widely distributed collaborative programmes of medical analysis. Copyright © 2013 Elsevier Ireland Ltd. All rights reserved.

Permian arc evolution associated with Panthalassa subduction along the eastern margin of the South China block, based on sandstone provenance and U-Pb detrital zircon ages of the Kurosegawa belt, Southwest Japan

NASA Astrophysics Data System (ADS)

Hara, Hidetoshi; Hirano, Miho; Kurihara, Toshiyuki; Takahashi, Toshiro; Ueda, Hayato

2018-01-01

We have studied the petrography, geochemistry, and detrital zircon U-Pb ages of sandstones from shallow-marine forearc sediments, accretionary complexes (ACs), and metamorphosed accretionary complexes (Meta-ACs) within the Kurosegawa belt of Southwest Japan. Those rocks formed in a forearc region of a Permian island arc associated with subduction of the Panthalassa oceanic crust along the eastern margin of the South China block (Yangtze block). The provenance of the shallow-marine sediments was dominated by basaltic to andesitic volcanic rocks and minor granitic rocks during the late Middle to Late Permian. The ACs were derived from felsic to andesitic volcanic rocks during the Late Permian. The provenance of Meta-ACs was dominated by andesitic volcanic rocks in the Middle Permian. The provenance, source rock compositions, and zircon age distribution for the forearc sediments, ACs and Meta-ACs have allowed us to reconstruct the geological history of the Permian arc system of the Kurosegawa belt. During the Middle Permian, the ACs were accreted along the eastern margin of the South China block. The Middle Permian arc was an immature oceanic island arc consisting of andesitic volcanic rocks. During the Late Permian, the ACs formed in a mature arc, producing voluminous felsic to andesitic volcanic rocks. A forearc basin developed during the late Middle to Late Permian. Subsequently, the Middle Permian ACs and part of the Late Permian AC underwent low-grade metamorphism in the Late to Early Jurassic, presenting the Meta-ACs.

Towards structured sharing of raw and derived neuroimaging data across existing resources

PubMed Central

Keator, D.B.; Helmer, K.; Steffener, J.; Turner, J.A.; Van Erp, T.G.M.; Gadde, S.; Ashish, N.; Burns, G.A.; Nichols, B.N.

2013-01-01

Data sharing efforts increasingly contribute to the acceleration of scientific discovery. Neuroimaging data is accumulating in distributed domain-specific databases and there is currently no integrated access mechanism nor an accepted format for the critically important meta-data that is necessary for making use of the combined, available neuroimaging data. In this manuscript, we present work from the Derived Data Working Group, an open-access group sponsored by the Biomedical Informatics Research Network (BIRN) and the International Neuroimaging Coordinating Facility (INCF) focused on practical tools for distributed access to neuroimaging data. The working group develops models and tools facilitating the structured interchange of neuroimaging meta-data and is making progress towards a unified set of tools for such data and meta-data exchange. We report on the key components required for integrated access to raw and derived neuroimaging data as well as associated meta-data and provenance across neuroimaging resources. The components include (1) a structured terminology that provides semantic context to data, (2) a formal data model for neuroimaging with robust tracking of data provenance, (3) a web service-based application programming interface (API) that provides a consistent mechanism to access and query the data model, and (4) a provenance library that can be used for the extraction of provenance data by image analysts and imaging software developers. We believe that the framework and set of tools outlined in this manuscript have great potential for solving many of the issues the neuroimaging community faces when sharing raw and derived neuroimaging data across the various existing database systems for the purpose of accelerating scientific discovery. PMID:23727024

Esophageal involvement is frequent in lichen planus: study in 32 patients with suggestion of clinicopathologic diagnostic criteria and therapeutic implications.

PubMed

Kern, Johannes S; Technau-Hafsi, Kristin; Schwacha, Henning; Kuhlmann, Jan; Hirsch, Gunther; Brass, Volker; Deibert, Peter; Schmitt-Graeff, Anette; Kreisel, Wolfgang

2016-12-01

Lichen planus (LP) is a classic skin disease that can involve the skin, hair, and nails, as well as the oral and genital mucosa. Histopathology is characterized by a T-lymphocytic, lichenoid, and interface dermatitis. Multiple case reports and small case series have shown that LP can involve the esophagus. However, the diagnostic criteria, incidence, and best treatment options remain uncertain. This study aimed to refine the diagnostic criteria, estimate prevalence, and present an outlook on treatment options to prevent long-term sequelae. Thirty-two consecutive patients with LP of the skin, hair, nails, oral mucosa, and/or genital mucosa underwent a comprehensive clinicopathologic assessment. Esophagogastroduodenoscopy was performed, and biopsies were evaluated histologically, immunohistochemically, and by direct immunofluorescence. Patients diagnosed with esophageal lichen planus (ELP) were followed up prospectively where possible. In total, 20 of 32 patients had ELP. Ten of these 20 patients were classified as having proven ELP, with clear-cut endoscopically visible lesions; the other 10 were classified as having probable ELP. Eight of 10 patients with proven ELP were started on new or additional therapy because of esophageal findings. Treatment with a topical budesonide formulation or systemic corticosteroids was successful in most patients with proven ELP and reversed functional esophageal stenosis. ELP can be found in more than 50% of patients with proven mucocutaneous LP when clinical and pathologic findings are correlated carefully. Topical or systemic corticosteroids are the first-line therapy for ELP. Timely medical therapy seems to prevent scarring stenosis of the esophagus.

Surgical volume and conversion rate in laparoscopic hysterectomy: does volume matter? A multicenter retrospective cohort study.

PubMed

Keurentjes, José H M; Briët, Justine M; de Bock, Geertruida H; Mourits, Marian J E

2018-02-01

A multicenter, retrospective, cohort study was conducted in the Netherlands. The aim was to evaluate whether surgical volume of laparoscopic hysterectomies (LHs) performed by proven skilled gynecologists had an impact on the conversion rate from laparoscopy to laparotomy. In 14 hospitals, all LHs performed by 19 proven skilled gynecologists between 2007 and 2010 were included in the analysis. Surgical volume, conversion rate and type of conversion (reactive or strategic) were retrospectively assessed. To estimate the impact of surgical volume on the conversion rate, logistic regressions were performed. These regressions were adjusted for patient's age, Body Mass Index (BMI), ASA classification, previous abdominal surgery and the indication (malignant versus benign) for the LH. During the study period, 19 proven skilled gynecologists performed a total of 1051 LHs. Forty percent of the gynecologists performed over 20 LHs per year (median 17.3, range 5.4-49.5). Conversion to laparotomy occurred in 5.0% of all LHs (53 of 1051); 38 (3.6%) were strategic and 15 (1.4%) were reactive conversions. Performing over 20 LHs per year was significantly associated with a lower overall conversion rate (OR adjusted 0.43, 95% CI 0.24-0.77), a lower strategic conversion rate (OR adjusted 0.32, 95% CI 0.16-0.65), but not with a lower reactive conversion rate (OR adjusted 0.96, 95% CI 0.33-2.79). A higher annual surgical volume of LHs by proven skilled gynecologists is inversely related to the conversion rate to laparotomy, and results in a lower strategic conversion rate.

Evidence that divergent selection shapes a developmental cline in a forest tree species complex.

PubMed

Costa E Silva, João; Harrison, Peter A; Wiltshire, Robert; Potts, Brad M

2018-05-19

Evolutionary change in developmental trajectories (heterochrony) is a major mechanism of adaptation in plants and animals. However, there are few detailed studies of the variation in the timing of developmental events among wild populations. We here aimed to identify the climatic drivers and measure selection shaping a genetic-based developmental cline among populations of an endemic tree species complex on the island of Tasmania. Seed lots from 38 native provenances encompassing the clinal transition from the heteroblastic Eucalyptus tenuiramis to the homoblastic Eucalyptus risdonii were grown in a common-garden field trial in southern Tasmania for 20 years. We used 27 climatic variables to model the provenance variation in vegetative juvenility as assessed at age 5 years. A phenotypic selection analysis was used to measure the fitness consequences of variation in vegetative juvenility based on its impact on the survival and reproductive capacity of survivors at age 20 years. Significant provenance divergence in vegetative juvenility was shown to be associated with home-site aridity, with the retention of juvenile foliage increasing with increasing aridity. Our results indicated that climate change may lead to different directions of selection across the geographic range of the complex, and in our mesic field site demonstrated that total directional selection within phenotypically variable provenances was in favour of reduced vegetative juvenility. We provide evidence that heteroblasty is adaptive and argue that, in assessing the impacts of rapid global change, developmental plasticity and heterochrony are underappreciated processes which can contribute to populations of long-lived organisms, such as trees, persisting and ultimately adapting to environmental change.

Evaluation of simple geochemical indicators of aeolian sand provenance: Late Quaternary dune fields of North America revisited

USGS Publications Warehouse

Muhs, Daniel

2017-01-01

Dune fields of Quaternary age occupy large areas of the world's arid and semiarid regions. Despite this, there has been surprisingly little work done on understanding dune sediment provenance, in part because many techniques are time-consuming, prone to operator error, experimental, highly specialized, expensive, or require sophisticated instrumentation. Provenance of dune sand using K/Rb and K/Ba values in K-feldspar in aeolian sands of the arid and semiarid regions of North America is tested here. Results indicate that K/Rb and K/Ba can distinguish different river sands that are sediment sources for dunes and dune fields themselves have distinctive K/Rb and K/Ba compositions. Over the Basin and Range and Great Plains regions of North America, the hypothesized sediment sources of dune fields are reviewed and assessed using K/Rb and K/Ba values in dune sands and in hypothesized source sediments. In some cases, the origins of dunes assessed in this manner are consistent with previous studies and in others, dune fields are found to have a more complex origin than previously thought. Use of K/Rb and K/Ba for provenance studies is a robust method that is inexpensive, rapid, and highly reproducible. It exploits one of the most common minerals found in dune sand, K-feldspar. The method avoids the problem of using simple concentrations of key elements that may be subject to interpretative bias due to changes in mineralogical maturity of Quaternary dune fields that occur over time.

Effects of temperature and drought manipulations on seedlings of Scots pine provenances.

PubMed

Taeger, S; Sparks, T H; Menzel, A

2015-03-01

Rising temperatures and more frequent and severe climatic extremes as a consequence of climate change are expected to affect growth and distribution of tree species that are adapted to current local conditions. Species distribution models predict a considerable loss of habitats for Pinus sylvestris. These models do not consider possible intraspecific differences in response to drought and warming that could buffer those impacts. We tested 10 European provenances of P. sylvestris, from the southwestern to the central European part of the species distribution, for their response to warming and to drought using a factorial design. In this common-garden experiment the air surrounding plants was heated directly to prevent excessive soil heating, and drought manipulation, using a rain-out shelter, permitted almost natural radiation, including high light stress. Plant responses were assessed as changes in phenology, growth increment and biomass allocation. Seedlings of P. sylvestris revealed a plastic response to drought by increased taproot length and root-shoot ratios. Strongest phenotypic plasticity of root growth was found for southwestern provenances, indicating a specific drought adaptation at the cost of overall low growth of aboveground structures even under non-drought conditions. Warming had a minor effect on growth but advanced phenological development and had a contrasting effect on bud biomass and diameter increment, depending on water availability. The intraspecific variation of P. sylvestris provenances could buffer climate change impacts, although additional factors such as the adaptation to other climatic extremes have to be considered before assisted migration could become a management option. © 2014 German Botanical Society and The Royal Botanical Society of the Netherlands.

ProvenCare perinatal: a model for delivering evidence/ guideline-based care for perinatal populations.

PubMed

Berry, Scott A; Laam, Leslie A; Wary, Andrea A; Mateer, Harry O; Cassagnol, Hans P; McKinley, Karen E; Nolan, Ruth A

2011-05-01

Geisinger Health System (GHS) has applied its ProvenCare model to demonstrate that a large integrated health care delivery system, enabled by an electronic health record (EHR), could reengineer a complicated clinical process, reduce unwarranted variation, and provide evidence-based care for patients with a specified clinical condition. In 2007 GHS began to apply the model to a more complicated, longer-term condition of "wellness"--perinatal care. ADAPTING PROVENCARE TO PERINATAL CARE: The ProvenCare Perinatal initiative was more complex than the five previous ProvenCare endeavors in terms of breadth, scope, and duration. Each of the 22 sites created a process flow map to depict the current, real-time process at each location. The local practice site providers-physicians and mid-level practitioners-reached consensus on 103 unique best practice measures (BPMs), which would be tracked for every patient. These maps were then used to create a single standardized pathway that included the BPMs but also preserved some unique care offerings that reflected the needs of the local context. A nine-phase methodology, expanded from the previous six-phase model, was implemented on schedule. Pre- to postimplementation improvement occurred for all seven BPMs or BPM bundles that were considered the most clinically relevant, with five statistically significant. In addition, the rate of primary cesarean sections decreased by 32%, and birth trauma remained unchanged as the number of vaginal births increased. Preliminary experience suggests that integrating evidence/guideline-based best practices into work flows in inpatient and outpatient settings can achieve improvements in daily patient care processes and outcomes.

Impact of fresh and saline water flooding on leaf gas exchange in two Italian provenances of Tamarix africana Poiret.

PubMed

Abou Jaoudé, R; de Dato, G; Palmegiani, M; De Angelis, P

2013-01-01

In Mediterranean coastal areas, changes in precipitation patterns and seawater levels are leading to increased frequency of flooding and to salinization of estuaries and freshwater systems. Tamarix spp. are often the only woody species growing in such environments. These species are known for their tolerance to moderate salinity; however, contrasting information exists regarding their tolerance to flooding, and the combination of the two stresses has never been studied in Tamarix spp. Here, we analyse the photosynthetic responses of T. africana Poiret to temporary flooding (45 days) with fresh or saline water (200 mm) in two Italian provenances (Simeto and Baratz). The measurements were conducted before and after the onset of flooding, to test the possible cumulative effects of the treatments and effects on twig aging, and to analyse the responses of twigs formed during the experimental period. Full tolerance was evident in T. africana with respect to flooding with fresh water, which did not affect photosynthetic performances in either provenance. Saline flooding was differently tolerated by the two provenances. Moreover, salinity tolerance differently affected the two twig generations. In particular, a reduction in net assimilation rate (-48.8%) was only observed in Baratz twigs formed during the experimental period, compared to pre-existing twigs. This reduction was a consequence of non-stomatal limitations (maximum carboxylation rate and electron transport), probably as a result of higher Na transport to the twigs, coupled with reduced Na storage in the roots. © 2012 German Botanical Society and The Royal Botanical Society of the Netherlands.

ProvenCare: Geisinger's Model for Care Transformation through Innovative Clinical Initiatives and Value Creation.

PubMed

2009-04-01

Geisinger's system of care can be seen as a microcosm of the national delivery of healthcare, with implications for decision makers in other health plans. In this interview, Dr Ronald A. Paulus focuses on Geisinger's unique approach to patient care. In its core, this approach represents a system of quality and value initiatives based on 3 major programs-Proven Health Navigation (medical home); the ProvenCare model; and transitions of care. The goal of such an approach is to optimize disease management by using a rational reimbursement paradigm for appropriate interventions, providing innovative incentives, and engaging patients in their own care as part of any intervention. Dr Paulus explains the reasons why, unlike Geisinger, other stakeholders, including payers, providers, patients, and employers, have no intrinsic reasons to be concerned with quality and value initiatives. In addition, he says, an electronic infrastructure that could be modified as management paradigms evolve is a necessary tool to ensure the healthcare delivery system's ability to adapt to new clinical realities quickly to ensure the continuation of delivering best value for all stakeholders.

Malignant head and neck tumours in Radiology Department JPMC Karachi -- a tertiary care experience.

PubMed

Kadri, Shazia; Uddin, Sami; Ahmed, Naveed; Mahmood, Tariq

2015-08-01

To study age, gender and sites of malignant head and neck tumours on contrast-enhanced computed tomography and to elucidate its role. The retrospective study was conducted at the Jinnah Postgraduate Medical Centre, Karachi, and comprised data of patients with histologically proven malignant head and neck tumours reporting from February 2013 to February 2014. Contrast enhanced computed tomography with puffed cheek technique was done in cases of oral cancer, while routine contrast computed tomography was done in cases of other head and neck tumours. SPSS 19 was used for statistical analysis. A total of 100 biopsy-proven cases of malignant tumours comprised the study sample. The male: female ratio was 1.5:1 with an overall mean age of 46.4±16-76 years. . The most common histopathologically proven tumour was squamous cell carcinoma affecting oral mucosa 43(43%), followed by larynx 27(27%) and pharynx 10(10%) . Oral squamous cell carcinoma was the commonest tumour. Compute tomography scan with puffed cheek technique played a beneficial role in locating the site of primary tumour.

Signatures of mountain building: Detrital zircon U/Pb ages from northeast Tibet

USGS Publications Warehouse

Lease, Richard O.; Burbank, Douglas W.; Gehrels, George E.; Wang, Zhicai; Yuan, Daoyang

2007-01-01

Although detrital zircon has proven to be a powerful tool for determining provenance, past work has focused primarily on delimiting regional source terranes. Here we explore the limits of spatial resolution and stratigraphic sensitivity of detrital zircon in ascertaining provenance, and we demonstrate its ability to detect source changes for terranes separated by only a few tens of kilometers. For such an analysis to succeed for a given mountain, discrete intrarange source terranes must have unique U/Pb zircon age signatures and sediments eroded from the range must have well-defined depositional ages. Here we use ∼1400 single-grain U/Pb zircon ages from northeastern Tibet to identify and analyze an area that satisfies these conditions. This analysis shows that the edges of intermontane basins are stratigraphically sensitive to discrete, punctuated changes in local source terranes. By tracking eroding rock units chronologically through the stratigraphic record, this sensitivity permits the detection of the differential rock uplift and progressive erosion that began ca. 8 Ma in the Laji Shan, a 10-25-km-wide range in northeastern Tibet with a unique U/Pb age signature.

Preliminary results on time-resolved ion beam induced luminescence applied to the provenance study of lapis lazuli

NASA Astrophysics Data System (ADS)

Czelusniak, C.; Palla, L.; Massi, M.; Carraresi, L.; Giuntini, L.; Re, A.; Lo Giudice, A.; Pratesi, G.; Mazzinghi, A.; Ruberto, C.; Castelli, L.; Fedi, M. E.; Liccioli, L.; Gueli, A.; Mandò, P. A.; Taccetti, F.

2016-03-01

This work will present preliminary results concerning the use of time-resolved ion beam induced luminescence applied to provenance studies of lapis lazuli. Measurements were performed at the pulsed beam facility at LABEC laboratory in Florence. Lapis lazuli is a semi-precious gemstone, used as ornament since the early civilizations that can be found in few places on Earth. The importance of this work lies in understanding the origin of various samples of lapis lazuli, from which it may be possible to gain insight into trade routes from ancient times. The samples studied in this work originated from Chile, Afghanistan, Tajikistan, Myanmar, and Siberia. The stones were irradiated with 3 MeV protons and the resulting luminescence was detected by a photomultiplier tube, whose output was acquired using a sampling digitizer VME module (CAEN/V1720). Wavelength discrimination was performed at 430 nm utilizing a range of beam currents. The results showed that, by changing the beam current intensity, one can study different features of lapis lazuli, and this may aid in distinguishing lapis lazuli from different provenances.

Sediment provenance and paleoenvironmental changes in the northwestern shelf mud area of the South China Sea since the mid-Holocene

NASA Astrophysics Data System (ADS)

Xu, Fangjian; Hu, Bangqi; Dou, Yanguang; Liu, Xiting; Wan, Shiming; Xu, Zhaokai; Tian, Xu; Liu, Zhaoqing; Yin, Xuebo; Li, Anchun

2017-07-01

The late Quaternary paleoceanography and paleoenvironment of the South China Sea (SCS) have been well reconstructed over the last decade. In contrast, the provenance of the terrigenous sediments that have accumulated in the northwestern continental shelf mud area remains enigmatic. This study investigated the provenance of these sediments and the paleoenvironmental changes archived in Core X2 via the analysis of geochemical elements, grain size, and accelerator mass spectrometry (AMS) 14C ages. Based on the upper continental crust (UCC)-normalized REE patterns and REE fractionation parameters, southwestern and western Taiwanese rivers and the Pearl River were identified as the main sources of the fine-grained sediment deposited in the northwestern shelf mud area off Hainan Island. This finding further confirms the long-distance transport (> 1000 km) of fine-grained sediment from Taiwanese rivers to the northern SCS shelf and slope. Obvious changes in the grain size and Chemical Index of Alteration (CIA) record occurred at approximately 4.0 cal kyr BP and were likely caused by increased Hainan Island inputs due to sea level changes.

Multivariate analysis in provenance studies: Cerrillos obsidians case, Peru

NASA Astrophysics Data System (ADS)

Bustamante, A.; Delgado, M.; Latini, R. M.; Bellido, A. V. B.

2007-02-01

We present the preliminary results of a provenance study of obsidians samples from Cerrillos (ca. 800 100 b.c.) using Mössbauer Spectroscopy. The Cerrillos archaeological site, located in the Upper Ica Valley, Peru, is the only Paracas ceremonial center excavated so far. The archaeological data collected suggest the existence of a complex social and economic organization on the south coast of Peru. Provenance research of obsidian provides valuable information about the selection of lithic resources by our ancestors and eventually about the existence of communication routes and exchange networks. We characterized 18 obsidian artifacts samples by Mössbauer spectroscopy from Cerrillos. The spectra, recorded at room temperature using different velocities, are mainly composed of broad asymmetric doublets due to the superposition of at least two quadrupole doublets corresponding to Fe2+ in two different sites (species A and B), one weak Fe3+ doublet (specie C) and magnetic components associated to the presence of small particles of magnetite. Multivariate statistical analysis of the Mössbauer data (hyperfine parameters) allows to defined two main groups of obsidians, reflecting different geographical origins.

The IRIS-GUS Shuttle Borne Upper Stage System

NASA Technical Reports Server (NTRS)

Tooley, Craig; Houghton, Martin; Bussolino, Luigi; Connors, Paul; Broudeur, Steve (Technical Monitor)

2002-01-01

This paper describes the Italian Research Interim Stage - Gyroscopic Upper Stage (IRIS-GUS) upper stage system that will be used to launch NASA's Triana Observatory from the Space Shuttle. Triana is a pathfinder earth science mission being executed on rapid schedule and small budget, therefore the mission's upper stage solution had to be a system that could be fielded quickly at relatively low cost and risk. The building of the IRIS-GUS system wa necessary because NASA lost the capability to launch moderately sized upper stage missions fro the Space Shuttle when the PAM-D system was retired. The IRIS-GUS system restores this capability. The resulting system is a hybrid which mates the existing, flight proven IRIS (Italian Research Interim Stage) airborne support equipment to a new upper stage, the Gyroscopic Upper Stage (GUS) built by the GSFC for Triana. Although a new system, the GUS exploits flight proven hardware and design approaches in most subsystems, in some cases implementing proven design approaches with state-of-the-art electronics. This paper describes the IRIS-GUS upper stage system elements, performance capabilities, and payload interfaces.

Cyclone tolerance in new world arecaceae: biogeographic variation and abiotic natural selection.

PubMed

Griffith, M Patrick; Noblick, Larry R; Dowe, John L; Husby, Chad E; Calonje, Michael A

2008-10-01

Consistent abiotic factors can affect directional selection; cyclones are abiotic phenomena with near-discrete geographic limits. The current study investigates selective pressure of cyclones on plants at the species level, testing for possible natural selection. New World Arecaceae (palms) are used as a model system, as plants with monopodial, unbranched arborescent form are most directly affected by the selective pressure of wind load. Living specimens of known provenance grown at a common site were affected by the same cyclone. Data on percentage mortality were compiled and analysed in biogeographic and phylogenetic contexts. Palms of cyclone-prone provenance exhibited a much lower (one order of magnitude) range in cyclone tolerance, and significantly lower (P < 0.001) mean percentage mortality than collections from cyclone-free areas. Palms of cyclone-free provenance had much greater variation in tolerance, and significantly greater mean percentage mortality. A test for serial independence recovered no significant phylogenetic autocorrelation of percentage mortality. Variation in cyclone tolerance in New World Arecaceae correlates with biogeography, and is not confounded with phylogeny. These results suggest natural selection of cyclone tolerance in cyclone-prone areas.

Statistical analysis for validating ACO-KNN algorithm as feature selection in sentiment analysis

NASA Astrophysics Data System (ADS)

Ahmad, Siti Rohaidah; Yusop, Nurhafizah Moziyana Mohd; Bakar, Azuraliza Abu; Yaakub, Mohd Ridzwan

2017-10-01

This research paper aims to propose a hybrid of ant colony optimization (ACO) and k-nearest neighbor (KNN) algorithms as feature selections for selecting and choosing relevant features from customer review datasets. Information gain (IG), genetic algorithm (GA), and rough set attribute reduction (RSAR) were used as baseline algorithms in a performance comparison with the proposed algorithm. This paper will also discuss the significance test, which was used to evaluate the performance differences between the ACO-KNN, IG-GA, and IG-RSAR algorithms. This study evaluated the performance of the ACO-KNN algorithm using precision, recall, and F-score, which were validated using the parametric statistical significance tests. The evaluation process has statistically proven that this ACO-KNN algorithm has been significantly improved compared to the baseline algorithms. The evaluation process has statistically proven that this ACO-KNN algorithm has been significantly improved compared to the baseline algorithms. In addition, the experimental results have proven that the ACO-KNN can be used as a feature selection technique in sentiment analysis to obtain quality, optimal feature subset that can represent the actual data in customer review data.

Dupuytren in a Child: Rare Presentation of a Rare Clinical Entity.

PubMed

Spyropoulou, Georgia-Alexandra; Pavlidis, Leonidas; Milothridis, Panagiotis; Zaraboukas, Thomas; Demiri, Efterpi

2016-12-01

Dupuytren disease in children younger than 10 years is rare and only 8 histologically proven cases have been reported. A histologically proven Dupuytren disease in a 10-year-old with an uncommon clinical presentation as a nodule on the radial side of the middle phalanx of the little finger is documented. Dupuytren's disease should be in the differential diagnosis in cases of nodules and contractures in the palm and fingers of children. Copyright © 2016 American Society for Surgery of the Hand. Published by Elsevier Inc. All rights reserved.

Control system design and analysis using the INteractive Controls Analysis (INCA) program

NASA Technical Reports Server (NTRS)

Bauer, Frank H.; Downing, John P.

1987-01-01

The INteractive Controls Analysis (INCA) program was developed at the Goddard Space Flight Center to provide a user friendly efficient environment for the design and analysis of linear control systems. Since its inception, INCA has found extensive use in the design, development, and analysis of control systems for spacecraft, instruments, robotics, and pointing systems. Moreover, the results of the analytic tools imbedded in INCA have been flight proven with at least three currently orbiting spacecraft. This paper describes the INCA program and illustrates, using a flight proven example, how the package can perform complex design analyses with relative ease.

The use of a tracking test battery in the quantitative evaluation of neurological function

NASA Technical Reports Server (NTRS)

Repa, B. S.

1973-01-01

A number of tracking tasks that have proven useful to control engineers and psychologists measuring skilled performance have been evaluated for clinical use. Normal subjects as well as patients with previous diagnoses of Parkinson's disease, multiple sclerosis, and cerebral palsy were used in the evaluation. The tests that were studied included step tracking, random tracking, and critical tracking. The results of the present experiments encourage the continued use of tracking tasks as assessment precedures in a clinical environment. They have proven to be reliable, valid, and sensitive measures of neurological function.

A detrital zircon provenance study of the Lower Carboniferous sequences in the East Fife section of the Midland Valley of Scotland

NASA Astrophysics Data System (ADS)

Murchie, Sean; Robinson, Ruth, ,, Dr; Lancaster, Penelope, ,, Dr

2014-05-01

Detrital zircons from the Lower Carboniferous clastic rocks of the Midland Valley of Scotland have been dated using U-Pb laser ablation inductively coupled plasma mass spectrometry (LA-ICPMS) to determine which source areas contributed sediment to the basin during its development, and to investigate whether provenance changed during deposition of these units. Specific provenance detection using U/Pb dating of zircons has never been attempted in these rocks, and there are uncertainties remaining about the regional paleogeographic setting for the Midland Valley. Four samples from the Dinantian Strathclyde Group have been analysed, and the units are locally known as the Fife Ness, Anstruther, Pittenweem, Sandy Craig, and Pathhead formations. The formations are composed of shallow marine, deltaic, fluvial and floodplain deposits and these predominantly siliciclastic sedimentary rocks are interbedded with thin fossiliferous carbonate bands. The samples are quartz arenitic, sub-arkosic and lithic arkosic medium-grained sandstones, predominantly from a fluvial origin. The British Geological Survey developed a lithostratigraphy which is the most used framework for the Strathclyde Group (Browne et al., 1997), but a different biostratigraphical framework based on palynology has been proposed by Owens et al. (2005). In addition to identifying provenance, the zircon age populations for each formation are compared to test which stratigraphic framework is correct. More broadly, the provenance data provides a way to improve the regional palaeogeographic setting for the Midland Valley. Zircon ages in the Strathclyde Group are dominated by Late Mesoproterozoic to Late Palaeoproterozoic (0.9 - 2.0 Ga) and Early Palaeozoic (350 - 450 Ma) ages which reflect Caledonide (Laurentian-Baltica margin including Scotland, Scandinavia, Greenland, Newfoundland), Grampian and internal Midland Valley source areas. Notable peaks occur at 400 Ma, 1.0 --1.1 Ga, 1.3 Ga, 1.6 - 1.7 Ga, and 2.7 Ga, and the Proterozoic age peaks are consistent with a Dalradian source. Although the age spectra for each formation are broadly similar, the proportions of age populations differ and age peaks present in the Anstruther Formation are absent in other formations. For instance, the Anstruther Formation has a significantly larger proportion of Archaean-aged zircons compared to the Pittenweem Formation, and contains a 1.3 Ga peak which is absent in the other formations. This suggests that source areas evolved throughout the deposition of the Strathclyde Group. The dominance of Mesoproterozoic and Palaeoproterozoic ages relative to Palaeozoic ages contrasts to similar ages units in the Pennine Basin and offshore North Sea, where the latter dominate the age spectra (Hallsworth et al., 2000; Morton et al., 2001). This may reflect the proximity of the Dalradian terrane and organisation of river systems draining into the Fife section of the Midland Valley during the Dinantian. References: Browne, M.A. et al. (1997). A lithostratigraphical framework for the Carboniferous rocks of the Midland Valley of Scotland. BGS Technical Report WA/96/29 Owens, B. et al. (2005). Reappraisal of the Mississippian palynostratigraphy of the East Fife coast, Scotland, United Kingdom. Palynology, 29, 23-47 Hallsworth et al (2000). Carboniferous sand provenance in the Pennine Basin. Sedimentary Geology, 137, 137-145 Morton et al (2001). Zircon age and heavy mineral constraints on provenance of North Sea Carboniferous sandstones. Marine and petroleum geology, 18, 319-337

Geochemical compositions of Neoproterozoic to Lower Palaeozoic (?) shales and siltstones in the Volta Basin (Ghana): Constraints on provenance and tectonic setting

NASA Astrophysics Data System (ADS)

Amedjoe, Chiri G.; Gawu, S. K. Y.; Ali, B.; Aseidu, D. K.; Nude, P. M.

2018-06-01

Many researchers have investigated the provenance and tectonic setting of the Voltaian sediments using the geochemistry of sandstones in the basin. The shales and siltstones in the basin have not been used much in the provenance studies. In this paper, the geochemistry of shales and siltstones in the Kwahu Group and Oti Group of the Voltaian Supergroup from Agogo and environs in the southeastern section of the basin has constrained the provenance and tectonic setting. Trace element ratios La/Sc, Th/Sc and Cr/Th and REEs sensitive to average source compositions revealed sediments in the shales and siltstones may mainly be from felsic rocks, though contributions from old recycled sediments and some andesitic rock sediments were identified. The felsic rocks may be granites and/or granodiorites. Some intermediate rocks of andesitic composition are also identified, while the recycled sediments were probably derived from the basement metasedimentary rocks. The enrichment of light REE (LaN/YbN c. 7.47), negative Eu anomalies (Eu/Eu* c. 0.59), and flat heavy REE chondrite-normalized patterns, denote an upper-continental-crustal granitic source materials for the sediments. Trace-element ternary discriminant diagrams reveal passive margin settings for sediments, though some continental island arc settings sediments were also depicted. Mixing calculations based on REE concentrations and modeled chondrite-normalized REE patterns suggest that the Birimian basement complex may be the source of detritus in the Voltaian Basin. REEs are more associated with shales than siltstones. On this basis chondrite-normalized REE patterns show that shale lithostratigraphic units may be distinguished from siltstone lithostratigraphic units. The significant variability in shales elemental ratios can therefore be used to distinguish between shales of the Oti Group from that of the Kwahu Group.

Femoral head avascular necrosis: a frequently missed incidental finding on multidetector CT.

PubMed

Barille, M F; Wu, Jim S; McMahon, Colm J

2014-03-01

To determine the incidence of missed femoral head avascular necrosis (AVN) on pelvic computed tomography (CT) performed for clinical indications other than assessment for AVN. The study was a Health Insurance Portability and Accountability Act (HIPAA)-compliant retrospective study. The picture archiving and communication system (PACS) database was queried for patients with diagnosis of femoral head AVN on magnetic resonance imaging (MRI), who also underwent pelvic multidetector CT after or <30 days before the MRI examination. The MRI and CT images of 144 hips of 72 patients (39 patients with reported AVN on MRI and 33 age-matched controls; mean age = 60 years, 28 male, 44 female), were reviewed in consensus by two readers in a randomized, blinded manner. Using MRI-proven CT-visible AVN as a reference standard, the incidence of missed AVN on initial CT interpretation was determined. Readers confirmed AVN in 33 patients on the MRI images. Nine hips with AVN underwent joint replacement of the affected joint(s) prior to subsequent CT and were excluded. Forty-three MRI-proven AVN cases in 28 patients (15 bilateral, 13 unilateral) were available for analysis. The study readers diagnosed 35/43 (81%) MRI-proven AVN cases in 22/28 (79%) patients. Four of the 35 (11%) cases of MRI-proven, CT-visible AVN were prospectively reported in 3/22 (14%) patients at initial clinical interpretation, with a miss rate of 89% per hip and 86% per patient. Multidetector CT has high accuracy for detection of AVN; however, this is frequently missed as an incidental finding (89% missed in the present study). Assessment for signs of femoral AVN should be part of routine search pattern in interpretation of pelvic CT. Copyright © 2013 The Royal College of Radiologists. Published by Elsevier Ltd. All rights reserved.

The tectonic origin of the Western Transverse Ranges microplate, southern California: Sedimentologic evidence of rotation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Campbell, M.D.; Reed, W.E.

1993-04-01

Most workers currently working on the problem of Southern California tectonic history and development are in agreement that the Western Transverse Ranges are allochthonous. The major point of contention revolves around the question of the distance the various terranes have traveled and their point of origin. Two tectonic models have been developed over the years to explain the emplacement of the WTRM: (1) accretion of exotic, far-traveled terranes; or (2) rotation, possibly with a small amount of translation, of a native or locally-derived terrane. Both of these reconstructions rely heavily on paleomagnetic data, with minimal input from field studies ofmore » sediment provenance or depositional systems. Examination of published reconstructions and models reveals that each would require a totally different provenance for sediments, and radically divergent transport directions for these sediments. Thus, examination of Cretaceous sediments exposed in the Western Transverse Ranges provides an independent test of the models, and will contribute to the resolution of the controversy. Paleocurrent measurements from several different tectonic blocks all yield a northerly flow direction. Removal of approximately 90[degree] of clockwise rotation and 70 km of right-lateral slip would align these data with westerly flow indicators in Cretaceous conglomeratic fan deposits in the San Diego area. Analysis of point count data indicate a mixed provenance for these rocks, both the conglomerates, and the associated sandstone units. Data indicate mixed magmatic arc/recycled orogen, as well as dissected/transitional arc as the dominant provenance terranes. These data are consistent with deposition in a Cretaceous forearc basin, which, in the reconstruction, would have been located immediately west of the San Diego area. Tertiary rotation and right-lateral offset have slivered the margin, and transported the forearc basin northward, forming the present Western Transverse Ranges.« less

Dynamic Data Citation through Provenance - new approach for reproducible science in Geoscience Australia.

NASA Astrophysics Data System (ADS)

Bastrakova, I.; Car, N.

2017-12-01

Geoscience Australia (GA) is recognised and respected as the National Repository and steward of multiple nationally significance data collections that provides geoscience information, services and capability to the Australian Government, industry and stakeholders. Internally, this brings a challenge of managing large volume (11 PB) of diverse and highly complex data distributed through a significant number of catalogues, applications, portals, virtual laboratories, and direct downloads from multiple locations. Externally, GA is facing constant changer in the Government regulations (e.g. open data and archival laws), growing stakeholder demands for high quality and near real-time delivery of data and products, and rapid technological advances enabling dynamic data access. Traditional approach to citing static data and products cannot satisfy increasing demands for the results from scientific workflows, or items within the workflows to be open, discoverable, thrusted and reproducible. Thus, citation of data, products, codes and applications through the implementation of provenance records is being implemented. This approach involves capturing the provenance of many GA processes according to a standardised data model and storing it, as well as metadata for the elements it references, in a searchable set of systems. This provides GA with ability to cite workflows unambiguously as well as each item within each workflow, including inputs and outputs and many other registered components. Dynamic objects can therefore be referenced flexibly in relation to their generation process - a dataset's metadata indicates where to obtain its provenance from - meaning the relevant facts of its dynamism need not be crammed into a single citation object with a single set of attributes. This allows for simple citations, similar to traditional static document citations such as references in journals, to be used for complex dynamic data and other objects such as software code.

[Different responses of growth and root development of Schima superba provenance to the adjacent plant competition in different nutrient conditions].

PubMed

Yao, Jia Bao; Chu, Xiu Li; Zhou, Zhi Chun; Tong, Jian She; Wang, Hui; Yu, Jia Zhong

2017-04-18

Growth and root development of three Schima superba seedling provenances were influenced by adjacent plant competition in the homogeneous and heterogeneous nutrient environment, which revealed the reasons of S. superba competition differences in the different genotypes. The results indicated that, compared with homogeneous nutrient environment, all three S. superba provenances showed higher seedling height, more dry matter accumulation, and significant root proliferation in heterogeneous nutrient environment. Under heterogeneous nutrient environment, the seedlings of S. superba from Jian'ou of Fujian exhibited higher competitive advantage in growth than that of S. superba from Longquan of Zhejiang and Xinfeng of Jiangxi, especially standing out under mixed cultivation with seedlings of Cunninghamia lanceolata. Under mixed cultivation, the root growth parameters of S. superba such as root length, root surface area and volume increased by 20.4%-69.0% compared with the single plant, which enhanced the foraging ability and growth advantage. To some extent, however, the root development in Longquan of Zhejiang and Xinfeng of Jiangxi was suppressed when subjected to the pattern of mixed cultivation. Besides, the root growth and development of all three S. superba provenances were suppressed, which might be due to their root self-recognition in the pattern of mono cultivation. Therefore, the seedling growth in Jian'ou of Fujian decreased significantly, but seedling growth in Longquan of Zhejiang and Xinfeng of Jiangxi was not suppressed, even increased evidently, as their root physiological plasticity might play the crucial role in seedling growth. Hence the S. superba from Jian'ou of Fujian with high foraging efficiency and competition ability was suggested with the method of mixed forestation to improve the S. superba forest plantation productivity.

Entity Linking Leveraging the GeoDeepDive Cyberinfrastructure and Managing Uncertainty with Provenance.

NASA Astrophysics Data System (ADS)

Maio, R.; Arko, R. A.; Lehnert, K.; Ji, P.

2017-12-01

Unlocking the full, rich, network of links between the scientific literature and the real world entities to which data correspond - such as field expeditions (cruises) on oceanographic research vessels and physical samples collected during those expeditions - remains a challenge for the geoscience community. Doing so would enable data reuse and integration on a broad scale; making it possible to inspect the network and discover, for example, all rock samples reported in the scientific literature found within 10 kilometers of an undersea volcano, and associated geochemical analyses. Such a capability could facilitate new scientific discoveries. The GeoDeepDive project provides negotiated access to 4.2+ million documents from scientific publishers, enabling text and document mining via a public API and cyberinfrastructure. We mined this corpus using entity linking techniques, which are inherently uncertain, and recorded provenance information about each link. This opens the entity linking methodology to scrutiny, and enables downstream applications to make informed assessments about the suitability of an entity link for consumption. A major challenge is how to model and disseminate the provenance information. We present results from entity linking between journal articles, research vessels and cruises, and physical samples from the Petrological Database (PetDB), and incorporate Linked Data resources such as cruises in the Rolling Deck to Repository (R2R) catalog where possible. Our work demonstrates the value and potential of the GeoDeepDive cyberinfrastructure in combination with Linked Data infrastructure provided by the EarthCube GeoLink project. We present a research workflow to capture provenance information that leverages the World Wide Web Consortium (W3C) recommendation PROV Ontology.

Prognostic factors and clinical outcomes in patients with leptomeningeal metastasis from solid tumors.

PubMed

Waki, Fusako; Ando, Masashi; Takashima, Atsuo; Yonemori, Kan; Nokihara, Hiroshi; Miyake, Mototaka; Tateishi, Ukihide; Tsuta, Koji; Shimada, Yasuhiro; Fujiwara, Yasuhiro; Tamura, Tomohide

2009-06-01

Leptomeningeal metastasis (LM) occurs in 4-15% of patients with solid tumors. Although the clinical outcomes in cancer patients have been improving recently, no standard treatment for LM has been established as yet. The purpose of this study was to identify the prognostic factors in patients with solid tumors with cytologically proven LM. We retrospectively analyzed a series of 85 consecutive patients with cytologically proven LM who were treated between 1997 and 2005. The primary diseases were as follows; lung cancer (n = 36), breast cancer (n = 33), gastric cancer (n = 8), and others (n = 8). Forty-nine patients had brain metastasis at the time of diagnosis of the LM, and in 51 patients, MRI revealed meningeal dissemination in the brain or spine. The performance status (PS) was 0-1 in 26 patients and 2-4 in 59 patients. Thirty-one patients, including 19 with breast cancer, four with lung cancer, five with gastric cancer and three with other cancers, were treated by intrathecal (IT) chemotherapy. The response rate to the IT was 52% (95% confidence interval (CI): 41.4-62.6%). The median survival was 51 days (range, 3-759 days). A univariate analysis identified breast cancer, good PS (0-1), time to development of the LM (>1 year), and treatment by IT chemotherapy as being associated with a good prognosis, and multivariate analysis identified poor PS (HR: 1.72 (95% CI, 1.04-2.86) P = 0.04) and MRI-proven LM (HR: 1.82 (95% CI, 1.11-2.98) P = 0.02) as being associated with a poor prognosis. In patients with poor prognostic factors, such as poor PS or MRI-proven LM, palliative therapy might be the most suitable treatment strategy.

U-Pb Dating and Lu-Hf Isotopes of Detrital Zircons From the Southern Sikhote-Alin Orogenic Belt, Russian Far East: Tectonic Implications for the Early Cretaceous Evolution of the Northwest Pacific Margin

NASA Astrophysics Data System (ADS)

Liu, Kai; Zhang, Jinjiang; Wilde, Simon A.; Liu, Shiran; Guo, Feng; Kasatkin, Sergey A.; Golozoubov, Vladimir V.; Ge, Maohui; Wang, Meng; Wang, Jiamin

2017-11-01

The Sikhote-Alin orogenic belt in Russian Far East is comprised of several N-S trending belts, including the Late Jurassic to Early Cretaceous accretionary prisms and turbidite basin which are now separated by thrusts and strike-slip faults. The origin and collage of the belts have been studied for decades. However, the provenance of the belts remains unclear. Six sandstone samples were collected along a 200 km long east-west traverse across the major belts in the southern Sikhote-Alin for U-Pb dating and Lu-Hf isotope analysis to constrain the provenance and evaluate the evolution of the northwest Pacific margin at this time. The result reveals that the sediments from the main Samarka belt was mainly from the adjacent Bureya-Jiamusi-Khanka Block (BJKB); the eastern Samarka belt and the Zhuravlevka turbidite basin were supplied by detritus from both the North China Craton (NCC) and the BJKB; the Taukha belt was mainly fed by sediments from the NCC; whereas the data from the Sergeevka nappes are insufficient to resolve their provenance. In the Late Jurassic to Early Cretaceous, collision and subduction was important in the initial collage of most belts in Sikhote-Alin. However, merely E-W trending collage cannot explain the increasing importance of the NCC provenance from west to east. It is proposed that the main Samarka belt was located adjacent to the BJKB when deposited, whereas the other belts were farther south to accept the materials from the NCC. Sinistral strike-slip faulting transported the eastern belts northward after their initial collage by thrusting.

High mass (>18g) of late gadolinium enhancement on CMR imaging is associated with major cardiac events on long-term outcome in patients with biopsy-proven extracardiac sarcoidosis.

PubMed

Agoston-Coldea, Lucia; Kouaho, Sylvain; Sacre, Karim; Dossier, Antoine; Escoubet, Brigitte; Chillon, Sylvie; Laissy, Jean-Pierre; Rouzet, François; Kutty, Shelby; Extramiana, Fabrice; Leenhardt, Antoine; Borie, Raphael; Crestani, Bruno; Ou, Phalla

2016-11-01

Cardiac involvement is the most important cause of mortality in patients with systemic sarcoidosis. Late gadolinium enhancement (LGE) on cardiovascular magnetic resonance imaging (CMR) has been shown to be a predictor of major cardiovascular adverse events (MACE) in the setting of systemic sarcoidosis. We sought to evaluate the relationship between LGE mass and adverse long-term outcome in patients with biopsy-proven extracardiac sarcoidosis. Between 2001 and 2013, 197 consecutive patients with suspected cardiac sarcoidosis were identified in our institution database. Of them, 56 patients have had biopsy-proven extracardiac sarcoidosis and represented our studied population. Patients were divided into two groups based on LGE mass by a median value (mild LGE<18g, high LGE>18g) for comparison of MACE. Twenty-eight patients had a high mass of LGE. Of them, 15 (54%) experienced MACE (OR=31.15, 95% CI 3.7-262). Except for 1 patient, no patient with mild LGE presented with any MACE during follow-up (median of 32months). Patients with high LGE had lower CMR-derived left (53.6±14.9 vs. 62.2±6.7, p<0.01) and right (49.1±11.5 vs. 56.4±9.2, p<0.05) ventricular ejection fractions. LGE mass of 18g discriminated patients with and without MACE (93% sensitivity, 88% specificity, AUC=0.972). LGE mass was the only independent predictor of MACE on multivariate Cox analysis adjusted (OR=1.7, 95% CI 1.06 to 2.72, p=0.03). In biopsy-proven extracardiac sarcoidosis patients, a high mass of LGE >18g was associated with MACE. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

An examination of the predictive validity of the risk matrix 2000 in England and wales.

PubMed

Barnett, Georgia D; Wakeling, Helen C; Howard, Philip D

2010-12-01

This study examined the predictive validity of an actuarial risk-assessment tool with convicted sexual offenders in England and Wales. A modified version of the RM2000/s scale and the RM2000 v and c scales (Thornton et al., 2003) were examined for accuracy in predicting proven sexual violent, nonsexual violent, and combined sexual and/or nonsexual violent reoffending in a sample of sexual offenders who had either started a community sentence or been released from prison into the community by March 2007. Rates of proven reoffending were examined at 2 years for the majority of the sample (n = 4,946), and 4 years ( n = 578) for those for whom these data were available. The predictive validity of the RM2000 scales was also explored for different subgroups of sexual offenders to assess the robustness of the tool. Both the modified RM2000/s and the complete v and c scales effectively classified offenders into distinct risk categories that differed significantly in rates of proven sexual and/or nonsexual violent reoffending. Survival analyses on the RM2000/s and v scales (N = 9,284) indicated that the higher risk groups offended more quickly and at a higher rate than lower risk groups. The relative predictive validity of the RM2000/s, v, and c, as calculated using Receiver Operating Characteristics (ROC) analyses, were moderate (.68) for RM2000/s and large for both the RM2000/c (.73) and RM2000/v (.80), at the 2-year follow-up. RM2000/s was moderately accurate in predicting relative risk of proven sexual reoffending for a variety of subgroups of sexual offenders.

Geographic variation of stable isotopes in African elephant ivory

NASA Astrophysics Data System (ADS)

Ziegler, S.; Merker, S.; Jacob, D.

2012-04-01

In 1989, the international community listed the African elephant in Appendix I of the Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES) thus prohibiting commercial ivory trade. Recent surveillance data show that the illegal trade in ivory has been growing worldwide. Long-term preservation of many of the African elephant populations can be supported with a control mechanism that helps with the implementation of remedial conservation action. Therefore, setting up a reference database that predicts the origin of ivory specimens can assist in determining smuggling routes and the provenance of illegal ivory. Our research builds on earlier work to seek an appropriate method for determining the area of origin for individual tusks. Several researchers have shown that the provenance of elephant ivory can be traced by its isotopic composition, but this is the first attempt to produce an integrated isotopic reference database of elephant ivory provenance. We applied a combination of various routine geochemical analyses to measure the stable isotope ratios of hydrogen, carbon, nitrogen, oxygen, and sulphur. Up to now, we analysed 606 ivory samples of known geographical origin from African range states, museums and private collections, comprising 22 African elephant range states. The isotopic measurements were superimposed with data layers from vegetation, geology and climate. A regression function for the isotope composition of the water isotopes in precipitation and collagen in ivory was developed to overcome the problem of imprecise origin of some of the sampled material. Multivariate statistics, such as nearest neighborhood and discriminate analysis were applied to eventually allow a statistical determination of the provenance for ivory of unknown origin. Our results suggest that the combination of isotopic parameters have the potential to provide predictable and complementary markers for estimating the origin of seized elephant ivory.

Adding Semantics and OPM Ontology for the Provenance of Multi-sensor Merged Climate Data Records. Now What About Reproducibility?

NASA Astrophysics Data System (ADS)

Hua, H.; Wilson, B. D.; Manipon, G.; Pan, L.; Fetzer, E.

2011-12-01

Multi-decadal climate data records are critical to studying climate variability and change. These often also require merging data from multiple instruments such as those from NASA's A-Train that contain measurements covering a wide range of atmospheric conditions and phenomena. Multi-decadal climate data record of water vapor measurements from sensors on A-Train, operational weather, and other satellites are being assembled from existing data sources, or produced from well-established methods published in peer-reviewed literature. However, the immense volume and inhomogeneity of data often requires an "exploratory computing" approach to product generation where data is processed in a variety of different ways with varying algorithms, parameters, and code changes until an acceptable intermediate product is generated. This process is repeated until a desirable final merged product can be generated. Typically the production legacy is often lost due to the complexity of processing steps that were tried along the way. The data product information associated with source data, processing methods, parameters used, intermediate product outputs, and associated materials are often hidden in each of the trials and scattered throughout the processing system(s). We will discuss methods to help users better capture and explore the production legacy of the data, metadata, ancillary files, code, and computing environment changes used during the production of these merged and multi-sensor data products. By leveraging existing semantic and provenance tools, we can capture sufficient information to enable users to track, perform faceted searches, and visualize the provenance of the products and processing lineage. We will explore if sufficient provenance information can be captured to enable science reproducibility of these climate data records.

Provenance-Powered Automatic Workflow Generation and Composition

NASA Astrophysics Data System (ADS)

Zhang, J.; Lee, S.; Pan, L.; Lee, T. J.

2015-12-01

In recent years, scientists have learned how to codify tools into reusable software modules that can be chained into multi-step executable workflows. Existing scientific workflow tools, created by computer scientists, require domain scientists to meticulously design their multi-step experiments before analyzing data. However, this is oftentimes contradictory to a domain scientist's daily routine of conducting research and exploration. We hope to resolve this dispute. Imagine this: An Earth scientist starts her day applying NASA Jet Propulsion Laboratory (JPL) published climate data processing algorithms over ARGO deep ocean temperature and AMSRE sea surface temperature datasets. Throughout the day, she tunes the algorithm parameters to study various aspects of the data. Suddenly, she notices some interesting results. She then turns to a computer scientist and asks, "can you reproduce my results?" By tracking and reverse engineering her activities, the computer scientist creates a workflow. The Earth scientist can now rerun the workflow to validate her findings, modify the workflow to discover further variations, or publish the workflow to share the knowledge. In this way, we aim to revolutionize computer-supported Earth science. We have developed a prototyping system to realize the aforementioned vision, in the context of service-oriented science. We have studied how Earth scientists conduct service-oriented data analytics research in their daily work, developed a provenance model to record their activities, and developed a technology to automatically generate workflow starting from user behavior and adaptability and reuse of these workflows for replicating/improving scientific studies. A data-centric repository infrastructure is established to catch richer provenance to further facilitate collaboration in the science community. We have also established a Petri nets-based verification instrument for provenance-based automatic workflow generation and recommendation.

Relict basin closure accommodates continental convergence with minimal crustal shortening or deceleration of plate motion as inferred from detrital zircon provenance in the Caucasus

NASA Astrophysics Data System (ADS)

Cowgill, E.; Forte, A. M.; Niemi, N. A.; Avdeev, B.; Tye, A. R.; Trexler, C. C.; Javakhishvili, Z.; Elashvili, M.; Godoladze, T.

2016-12-01

Comparison of plate convergence with the timing and magnitude of upper-crustal shortening in collisional orogens indicates both shortening deficits (200-1700 km) and significant (30-40%) plate deceleration during collision, the cause(s) for which remain debated. The Greater Caucasus Mountains, which result from post-collisional Cenozoic closure of a relict Mesozoic back-arc basin on the northern margin of the Arabia-Eurasia collision zone, help reconcile these debates. Here we use U-Pb detrital zircon provenance data and the regional geology of the Caucasus to investigate the width of the now-consumed Mesozoic back-arc basin and its closure history. The provenance data record distinct southern and northern provenance domains that persisted until at least the Miocene; maximum basin width was likely 350-400 km. We propose that closure of the back-arc basin initiated at 35 Ma, coincident with initial (soft) Arabia-Eurasia collision along the Bitlis suture, eventually leading to 5 Ma (hard) collision between the Lesser Caucasus arc and the Scythian platform to form the Greater Caucasus Mountains. Final basin closure triggered deceleration of plate convergence and tectonic reorganization throughout the collision. Post-collisional subduction of such small (500-1000 km wide) relict ocean basins can account for both shortening deficits and delays in plate deceleration by accommodating convergence via subduction/underthrusting, although such shortening is easily missed if it occurs along structures hidden within flysch/slate belts. Relict-basin closure is likely typical early in continental collision at the end of a Wilson cycle due to the irregularity of colliding margins and extensive back-arc basin development during closure of long-lived ocean basins.

Proven and novel strategies for efficient editing of the human genome.

PubMed

Mussolino, Claudio; Mlambo, Tafadzwa; Cathomen, Toni

2015-10-01

Targeted gene editing with designer nucleases has become increasingly popular. The most commonly used designer nuclease platforms are engineered meganucleases, zinc-finger nucleases, transcription activator-like effector nucleases and the clustered regularly interspaced short palindromic repeat/Cas9 system. These powerful tools have greatly facilitated the generation of plant and animal models for basic research, and harbor an enormous potential for applications in biotechnology and gene therapy. This review recapitulates proven concepts of targeted genome engineering in primary human cells and elaborates on novel concepts that became possible with the dawn of RNA-guided nucleases and RNA-guided transcription factors. Copyright © 2015 Elsevier Ltd. All rights reserved.

[Host-microbiota crosstalk and cardiovascular diseases].

PubMed

Amar, Jacques

2018-06-13

When analyzing the microbiota-host crosstalk, we have to consider three participants in this dialogue: the gut microbiota, the intestinal barrier and bacterial translocation. Experimental data demonstrate that host microbiota crosstalk plays a causal on the regulation of blood pressure, glucose metabolism and the development of atherosclerosis. Host microbiota crosstalk is associated in humans with main cardiovascular risk factors notably hypertension and type 2 diabetes. Host microbiota crosstalk is associated in humans with the onset of cardiovascular diseases. The Mediterranean diet has proven as proven to be an effective strategy in improving cardiovascular prognosis and in changing gut microbiota. Copyright © 2018. Published by Elsevier Masson SAS.

μ-SRXRF characterization of Brazilian emeralds

NASA Astrophysics Data System (ADS)

Curado, J. F.; Radtke, M.; Buzanich, G.; Reinholz, U.; Riesemeier, H.; Guttler, R. A. S.; Rizzutto, M. A.

2014-04-01

The aim of the present study is to characterize emeralds from different mines of Brazil by using Synchrotron Radiation X-ray Fluorescence Microanalysis (μ-SRXRF). The advantage of this technique is that we can analyze a homogeneous, inclusion free area of the stone with the microbeam to distinguish the elemental fingerprint according to the provenance of the emerald. A total of 47 samples belonging to 5 different Brazilian mines were studied in this work and 28 elements were identified. By means of Principal Component Analysis (PCA) it is possible to build different groups according to the provenance of the stones, which allows to assign samples of unknown origin to the according mine.

Rhetoric, logic, and experiment in the quantum nonlocality debate

NASA Astrophysics Data System (ADS)

Graft, Donald A.

2017-09-01

This paper argues that quantum nonlocality (QNL) has not been rigorously proven, despite the existence of recent Einstein-Podolsky-Rosen-Bohm (EPRB) experiments that are claimed to be `loophole-free'. First, readers are alerted to rhetorical arguments, which are unfortunately often appealed to in the QNL debate, to empower readers to identify and reject such arguments. Second, logical problems in QNL proofs are described and exemplified by a discussion of the projection postulate problem. Third, experimental issues are described and exemplified by a discussion of the postselection problem. The paper concludes that QNL has not been proven and that locality cannot be excluded.

Rare earth elements in weathering profiles and sediments of Minnesota: Implications for provenance studies

USGS Publications Warehouse

Morey, G.B.; Setterholm, D.R.

1997-01-01

The relative abundance of rare earth elements in sediments has been suggested as a tool for determining their source rocks. This correlation requires that weathering, erosion, and sedimentation do not alter the REE abundances, or do so in a predictable manner. We find that the rare earth elements are mobilized and fractionated by weathering, and that sediments derived from the weathered materials can display modifications of the original pattern of rare earth elements of some due to grain-size sorting of the weathered material. However, the REE distribution pattern of the provenance terrane can be recognized in the sediments.

Comment on "Relict Basin Closure and Crustal Shortening Budgets During Continental Collision: An Example From Caucasus Sediment Provenance" by Cowgill et al. (2016)

NASA Astrophysics Data System (ADS)

Vincent, Stephen J.; Saintot, Aline; Mosar, Jon; Okay, Aral I.; Nikishin, Anatoly M.

2018-03-01

The southern slope of the Greater Caucasus mountains is the site of a former rift basin. In order to explain shortening deficits, plate deceleration, and the 5 Ma reorganization of the Arabia-Eurasia collision zone Cowgill et al. (2016) proposed that this basin closed 5 Myrs ago. Within the western Greater Caucasus, at least, careful examination of sedimentological, provenance, and seismic data, however, supports an earlier 35 Ma basin closure age. Basin closure cannot therefore be the driving mechanism for the 5 Ma deceleration of the Arabian plate and reorganization of the Arabia-Eurasia collision zone.

Just-in-time and stockless programs for hospitals: fad or trend?

PubMed

Lynch, D

1991-05-01

The JIT and stockless approach to provider-supplier relationships has proven to be a win-win proposition for the partners that have implemented it in many manufacturing industries and health care organizations as well. This strategy will fundamentally impact the entire cost structure within the hospital supply distribution chain. rewards have proven attainable and more comprehensive than had been hoped in the health care applications. The sweeping changes the health care industry experienced during the 1980s are leading creative materiel managers to seize the initiative to improve the current operating costs of their hospitals. They do not want to be left behind "holding the inventory."

Space Flight Operations Center local area network

NASA Technical Reports Server (NTRS)

Goodman, Ross V.

1988-01-01

The existing Mission Control and Computer Center at JPL will be replaced by the Space Flight Operations Center (SFOC). One part of the SFOC is the LAN-based distribution system. The purpose of the LAN is to distribute the processed data among the various elements of the SFOC. The SFOC LAN will provide a robust subsystem that will support the Magellan launch configuration and future project adaptation. Its capabilities include (1) a proven cable medium as the backbone for the entire network; (2) hardware components that are reliable, varied, and follow OSI standards; (3) accurate and detailed documentation for fault isolation and future expansion; and (4) proven monitoring and maintenance tools.

Provenance and depositional environment of epi-shelf lake sediment from Schirmacher Oasis, East Antarctica, vis-à-vis scanning electron microscopy of quartz grain, size distribution and chemical parameters

NASA Astrophysics Data System (ADS)

Shrivastava, Prakash K.; Asthana, Rajesh; Roy, Sandip K.; Swain, Ashit K.; Dharwadkar, Amit

2012-07-01

The scientific study of quartz grains is a powerful tool in deciphering the depositional environment and mode of transportation of sediments, and ultimately the origin and classification of sediments. Surface microfeatures, angularity, chemical features, and grain-size analysis of quartz grains, collectively reveal the sedimentary and physicochemical processes that acted on the grains during different stages of their geological history. Here, we apply scanning electron microscopic (SEM) analysis to evaluating the sedimentary provenance, modes of transport, weathering characteristics, alteration, and sedimentary environment of selected detrital quartz grains from the peripheral part of two epi-shelf lakes (ESL-1 and ESL-2) of the Schirmacher Oasis of East Antarctica. Our study reveals that different styles of physical weathering, erosive signatures, and chemical precipitation variably affected these quartz grains before final deposition as lake sediments. Statistical analysis (central tendencies, sorting, skewness, and kurtosis) indicates that these quartz-bearing sediments are poorly sorted glaciofluvial sediments. Saltation and suspension seem to have been the two dominant modes of transportation, and chemical analysis of these sediments indicates a gneissic provenance.

Provenance information as a tool for addressing engineered nanoparticle reproducibility challenges

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baer, Donald R.; Munusamy, Prabhakaran; Thrall, Brian D.

Nanoparticles of various types are of increasing research and technological importance in biological and other applications. Difficulties in the production and delivery of nanoparticles with consistent and well defined properties appear in many forms and have a variety of causes. Among several issues are those associated with incomplete information about the history of particles involved in research studies including the synthesis method, sample history after synthesis including time and nature of storage and the detailed nature of any sample processing or modification. In addition, the tendency of particles to change with time or environmental condition suggests that the time betweenmore » analysis and application is important and some type of consistency or verification process can be important. The essential history of a set of particles can be identified as provenance information tells the origin or source of a batch of nano-objects along with information related to handling and any changes that may have taken place since it was originated. A record of sample provenance information for a set of particles can play a useful role in identifying some of the sources and decreasing the extent of particle variability and the observed lack of reproducibility observed by many researchers.« less

Glacial sediment causing regional-scale elevated arsenic in drinking water.

PubMed

Erickson, Melinda L; Barnes, Randal J

2005-01-01

In the upper Midwest, USA, elevated arsenic concentrations in public drinking water systems are associated with the lateral extent of northwest provenance late Wisconsin-aged drift. Twelve percent of public water systems located within the footprint of this drift (212 of 1764) exceed 10 microg/L arsenic, which is the U.S. EPA's drinking water standard. Outside of the footprint, only 2.4% of public water systems (52 of 2182) exceed 10 microg/L arsenic. Both glacial drift aquifers and shallow bedrock aquifers overlain by northwest provenance late Wisconsin-aged sediment are affected by arsenic contamination. Evidence suggests that the distinct physical characteristics of northwest provenance late Wisconsin-aged drift--its fine-grained matrix and entrained organic carbon that fosters biological activity--cause the geochemical conditions necessary to mobilize arsenic via reductive mechanisms such as reductive desorption and reductive dissolution of metal oxides. This study highlights an important and often unrecognized phenomenon: high-arsenic sediment is not necessary to cause arsenic-impacted ground water--when "impacted" is now defined as >10 microg/L. This analysis also demonstrates the scientific and economic value of using existing large but imperfect statewide data sets to observe and characterize regional-scale environmental problems.

Transition of Suomi National Polar-Orbiting Partnership (S-NPP) Data Products for Operational Weather Forecasting Applications

NASA Technical Reports Server (NTRS)

Smith, Matthew R.; Molthan, Andrew L.; Fuell, Kevin K.; Jedlovec, Gary J.

2012-01-01

SPoRT is a team of NASA/NOAA scientists focused on demonstrating the utility of NASA and future NOAA data and derived products on improving short-term weather forecasts. Work collaboratively with a suite of unique products and selected WFOs in an end-to-end transition activity. Stable funding from NASA and NOAA. Recognized by the science community as the "go to" place for transitioning experimental and research data to the operational weather community. Endorsed by NWS ESSD/SSD chiefs. Proven paradigm for transitioning satellite observations and modeling capabilities to operations (R2O). SPoRT s transition of NASA satellite instruments provides unique or higher resolution data products to complement the baseline suite of geostationary data available to forecasters. SPoRT s partnership with NWS WFOs provides them with unique imagery to support disaster response and local forecast challenges. SPoRT has years of proven experience in developing and transitioning research products to the operational weather community. SPoRT has begun work with CONUS and OCONUS WFOs to determine the best products for maximum benefit to forecasters. VIIRS has already proven to be another extremely powerful tool, enhancing forecasters ability to handle difficult forecasting situations.

Sulfur isotope analysis of cinnabar from Roman wall paintings by elemental analysis/isotope ratio mass spectrometry--tracking the origin of archaeological red pigments and their authenticity.

PubMed

Spangenberg, Jorge E; Lavric, Jost V; Meisser, Nicolas; Serneels, Vincent

2010-10-15

The most valuable pigment of the Roman wall paintings was the red color obtained from powdered cinnabar (Minium Cinnabaris pigment), the red mercury sulfide (HgS), which was brought from mercury (Hg) deposits in the Roman Empire. To address the question of whether sulfur isotope signatures can serve as a rapid method to establish the provenance of the red pigment in Roman frescoes, we have measured the sulfur isotope composition (δ(34)S value in ‰ VCDT) in samples of wall painting from the Roman city Aventicum (Avenches, Vaud, Switzerland) and compared them with values from cinnabar from European mercury deposits (Almadén in Spain, Idria in Slovenia, Monte Amiata in Italy, Moschellandsberg in Germany, and Genepy in France). Our study shows that the δ(34)S values of cinnabar from the studied Roman wall paintings fall within or near to the composition of Almadén cinnabar; thus, the provenance of the raw material may be deduced. This approach may provide information on provenance and authenticity in archaeological, restoration and forensic studies of Roman and Greek frescoes. Copyright © 2010 John Wiley & Sons, Ltd.

Predictors of Acute Bacterial Meningitis in Children from a Malaria-Endemic Area of Papua New Guinea

PubMed Central

Laman, Moses; Manning, Laurens; Greenhill, Andrew R.; Mare, Trevor; Michael, Audrey; Shem, Silas; Vince, John; Lagani, William; Hwaiwhanje, Ilomo; Siba, Peter M.; Mueller, Ivo; Davis, Timothy M. E.

2012-01-01

Predictors of acute bacterial meningitis (ABM) were assessed in 554 children in Papua New Guinea 0.2–10 years of age who were hospitalized with culture-proven meningitis, probable meningitis, or non-meningitic illness investigated by lumbar puncture. Forty-seven (8.5%) had proven meningitis and 36 (6.5%) had probable meningitis. Neck stiffness, Kernig’s and Brudzinski’s signs and, in children < 18 months of age, a bulging fontanel had positive likelihood ratios (LRs) ≥ 4.3 for proven/probable ABM. Multiple seizures and deep coma were less predictive (LR = 1.5–2.1). Single seizures and malaria parasitemia had low LRs (≤ 0.5). In logistic regression including clinical variables, Kernig’s sign and deep coma were positively associated with ABM, and a single seizure was negatively associated (P ≤ 0.01). In models including microscopy, neck stiffness and deep coma were positively associated with ABM and parasitemia was negatively associated with ABM (P ≤ 0.04). In young children, a bulging fontanel added to the model (P < 0.001). Simple clinical features predict ABM in children in Papua New Guinea but malaria microscopy augments diagnostic precision. PMID:22302856

Reproductive performance and fertility testing in strain 13 and Hartley guinea pigs.

PubMed

Doyle, R E; Sharp, G C; Irvin, W S; Berck, K

1976-08-01

A study to test the effects of certain experimental manipulation on the reproductive capacity of male guinea pigs required verifying the fertility of the male guinea pigs before and after manipulation. Methods of testing fertility were evaluated, and normal reproductive data from preexperimental and control groups were tabulated and analyzed. No data from the actual experiments were included. Virgin and proven fertile males were mated with 1 (1:1) or 2 (2:1) virgin or proven fertile females. Inbred (13/N Umm) and conventional (Mfi:CFDH-ML (DH) ) guinea pigs were used. Ninety-five percent of both groups of males were fertile. Eighty-four percent of both groups of females were fertile. Male guinea pigs previously proven fertile had the same subsequent fertility rate as virgin males. Over one-third of the conceptions did not take place during the first estrus cycle (16 da) during which the males and females were mated. Strain 13 and Hartley females had litters of approximately the same size (3.1 vs 3.0), but the neonatal mortality was statistically lower (P less than 0.001) in the Hartley stock (9.3%) than in the Strain 13 guinea pigs (28.4%).

Detrital zircon age and isotopic constraints on the provenance of turbidites from the southernmost part of the Beishan orogen, NW China

NASA Astrophysics Data System (ADS)

Guo, Q. Q.; Chung, S. L.; Lee, H. Y.; Xiao, W.; Hou, Q.; Li, S.

2017-12-01

The Altaids in Central and East Asia is one of the largest accretionary orogenic collages in the world. The Beishan orogen, linked the Tianshan and Xingmeng orogens, occupy a key position to trace the terminal processes of the Altaids. It comprises an assemblage of magmatic arcs and ophiolitic mélanges. The Permian clastic turbidites, situated between the Huaniushan arc and the Shibanshan arc, are the youngest reported deep-marine clasts in the Beishan orogen. They are separated into the Liuyuan turbidites (NT) to the north and the Heishankou turbidites (ST) to the south by the Liuyuan complex. Detrital zircon grains from the NT yielded a wide range, from 254-3111 Ma, with two age clusters at 273 Ma and 424 Ma, indicating they provenance from the Huaniushan arc to the north. Those from the ST yielded ages from 260-2209 Ma, with age clusters at 270 Ma, 295 Ma, 420 Ma and 878 Ma, indicating the provenance from the Shibanshan arc to the south. The youngest three grains from the NT yield a weighted mean age of 260 Ma and those from the ST an age of 255 Ma, indicating an End-Permian maximum depositional age. The Precambrian zircons of the NT have diverse ɛHf(t) values (-12.6 to +10.4), while those of the ST from -6 to -2.6, indicating distinguishing histories of their provenances. The NT have more positive ɛNd(t) values than the ST, suggesting more juvenile or less evolved crustal components in the source. Two contrasting provenances, together with data in the literature, define the latest suture in the Beishan region at 240-250 Ma. The younger peak of U-Pb analysis results of detrital zircons from the northern part of the final suture zone in the southern Altaids is younging eastward from 288 Ma to 247 Ma, which may characterize the closure of the Paleo-Asian Ocean from west to east in about 40 Ma. This identification of the latest suture in the southern Altaids provides new constraints on the Paleo-Asian Ocean - specifically the nature and timing of the end of the subduction - but also on the amalgamation of the super continental of Eurasia that consists of micro blocks with a variety of histories.

Reproducibility and Knowledge Capture Architecture for the NASA Earth Exchange (NEX)

NASA Astrophysics Data System (ADS)

Votava, P.; Michaelis, A.; Nemani, R. R.

2015-12-01

NASA Earth Exchange (NEX) is a data, supercomputing and knowledge collaboratory that houses NASA satellite, climate and ancillary data where a focused community can come together to address large-scale challenges in Earth sciences. As NEX has been growing into a platform for analysis, experiments and production of data on the order of petabytes in volume, it has been increasingly important to enable users to easily retrace their steps, identify what datasets were produced by which process or chain of processes, and give them ability to readily reproduce their results. This can be a tedious and difficult task even for a small project, but is almost impossible on large processing pipelines. For example, the NEX Landsat pipeline is deployed to process hundreds of thousands of Landsat scenes in a non-linear production workflow with many-to-many mappings of files between 40 separate processing stages where over 100 million processes get executed. At this scale it is almost impossible to easily examine the entire provenance of each file, let alone easily reproduce it. We have developed an initial solution for the NEX system - a transparent knowledge capture and reproducibility architecture that does not require any special code instrumentation and other actions on user's part. Users can automatically capture their work through a transparent provenance tracking system and the information can subsequently be queried and/or converted into workflows. The provenance information is streamed to a MongoDB document store and a subset is converted to an RDF format and inserted into our triple-store. The triple-store already contains semantic information about other aspects of the NEX system and adding provenance enhances the ability to relate workflows and data to users, locations, projects and other NEX concepts that can be queried in a standard way. The provenance system has the ability to track data throughout NEX and across number of executions and can recreate and re-execute the entire history and reproduce the results. The information can also be used to automatically create individual workflow components and full workflows that can be visually examined, modified, executed and extended by researchers. This provides a key component for accelerating research through knowledge capture and scientific reproducibility on NEX.

40Ar- 39Ar dating of detrital muscovite in provenance investigations: a case study from the Adelaide Rift Complex, South Australia

NASA Astrophysics Data System (ADS)

Haines, Peter W.; Turner, Simon P.; Kelley, Simon P.; Wartho, Jo-Anne; Sherlock, Sarah C.

2004-11-01

Detrital zircon ages are commonly used to investigate sediment provenance and supply routes. Here, we explore the advantages of employing multiple, complimentary techniques via a case study of the Neoproterozoic and Cambrian of the Adelaide Rift Complex, South Australia. Detrital muscovite Ar-Ar ages are presented from stratigraphic units, or equivalents, that have previously been the subject of U-Pb detrital zircon dating, and, in some cases, whole-rock Sm-Nd isotope studies. The zircon age ranges and whole-rock Sm-Nd isotope data suggest that early Neoproterozoic sediments from near the base of the Adelaide Rift Complex comprise a mixture of detritus derived from the adjacent Gawler Craton (Palaeoproterozoic to earliest Mesoproterozoic) and overlying Gairdner flood basalts. In contrast, detrital muscovites from this level have a broad scatter of Mesoproterozoic infrared (IR) laser total fusion Ar-Ar ages, while UV laser traverses indicate that the age spread reflects partial resetting by multiple heating events, rather than a mixture of sources. Younger Neoproterozoic sediments document replacement of the Gawler Craton by the more distant Musgrave and/or Albany-Fraser Orogens as the main provenance. The Cambrian Kanmantoo Group marks an abrupt change in depositional style and a new sediment source. The Kanmantoo Group have older Nd model ages than underlying strata, yet are dominated by near to deposition-aged (˜500-650 Ma) detrital zircons and muscovites, suggesting rapid cooling and exhumation of a tectonically active provenance region. Although this source remains uncertain, evidence points towards the distant Pan-African orogenic belts. Deposition in the Adelaide Rift Complex was terminated in the late Early Cambrian by the Delamerian Orogeny, and the results of previous detrital mineral dating studies from the Lachlan Fold Belt to the east are consistent with at least partial derivation of these sediments from reworked upper Adelaide Rift Complex (Kanmantoo Group), rather than a continuation of sediment supply from the Kanmantoo Group sediment source. More broadly, the data suggest a close link between basin formation and orogen exhumation, and we also speculate that mantle plumes have played a significant role in crustal evolution at this Palaeo-Pacific margin of Gondwanaland, challenging the notion that subduction zones are the principle sites of crustal growth and sediment provenance.

Using pebble lithology and roundness to interpret gravel provenance in piedmont fluvial systems of the Rocky Mountains, USA

USGS Publications Warehouse

Lindsey, D.A.; Langer, W.H.; Van Gosen, B. S.

2007-01-01

Clast populations in piedmont fluvial systems are products of complex histories that complicate provenance interpretation. Although pebble counts of lithology are widely used, the information provided by a pebble count has been filtered by a potentially large number of processes and circumstances. Counts of pebble lithology and roundness together offer more power than lithology alone for the interpretation of provenance. In this study we analyze pebble counts of lithology and roundness in two contrasting fluvial systems of Pleistocene age to see how provenance varies with drainage size. The two systems are 1) a group of small high-gradient incised streams that formed alluvial fans and terraces and 2) a piedmont river that formed terraces in response to climate-driven cycles of aggradation and incision. We first analyze the data from these systems within their geographic and geologic context. After this is done, we employ contingency table analysis to complete the interpretation of pebble provenance. Small tributary streams that drain rugged mountains on both sides of the Santa Cruz River, southeast Arizona, deposited gravel in fan and terrace deposits of Pleistocene age. Volcanic, plutonic and, to a lesser extent, sedimentary rocks are the predominant pebble lithologies. Large contrasts in gravel lithology are evident among adjacent fans. Subangular to subrounded pebbles predominate. Contingency table analysis shows that hard volcanic rocks tend to remain angular and, even though transport distances have been short, soft tuff and sedimentary rocks tend to become rounded. The Wind River, a major piedmont stream in Wyoming, drains rugged mountains surrounding the northwest part of the Wind River basin. Under the influence of climate change and glaciation during the Pleistocene, the river deposited an extensive series of terrace gravels. In contrast to Santa Cruz tributary gravel, most of the Wind River gravel is relatively homogenous in lithology and is rounded to well-rounded. Detailed analysis reveals a multitude of sources in the headwaters and the basin itself, but lithologies from these sources are combined downstream. Well-rounded volcanic and recycled quartzite clasts were derived from the headwaters. Precambrian igneous and metamorphic clasts were brought down tributary valleys to the Wind River by glaciers, and sandstone was added where the river enters the Wind River structural basin.

Role of genetics in adapting forests under climate change: lessons learned from common garden experiments in central Europe

NASA Astrophysics Data System (ADS)

Chakraborty, Debojyoti; Schueler, Silvio

2017-04-01

Adaptive management aiming at reducing vulnerability and enhancing the resilience of forested ecosystems is a key to preserving the potential of forests to provide multiple ecosystem services under climate change. Planting alternative or non native tree species adapted to future conditions and also utilizing the genetic variation within tree species has also been suggested as an important adaptive management strategy under climate change. Therefore, knowledge on suitable provenances/populations is a key issue. Provenance trial experiments, where several populations of a species are planted in a particular climate or throughout an appropriate climatic gradient offers a great opportunity to understand adaptive genetic variation within a tree species. These trials were primarily established, for identifying populations with desired growth and fitness characteristics. Due to the increasing interest in climate change, such trials were revisited to understand the relation between growth performance and climate and to recommend suitable populations for future conditions. Here we present the lessons learned from provenance trials of Norway spruce and Douglas -fir in central Europe. With data from provenance trials planted across a wide range of environmental conditions in central Europe we developed multivariate models, Universal Response Functions (URFs). The URFs predict growth performance as a function of climate of planting locations (i.e. environmental factors) and provenance/ population origin (i.e. genetic factors). The flexibility of the URFs as a decision making tool is remarkable. The model can be used as to identify suitable planting material for a give site, and vice versa and also as a species distribution model (SDM) with integrated genetic variation. Under current and climate change scenarios, the URFs were applied to predict populations with higher growth performance in central Europe and also as species distribution models for Douglas-fir (Pseudotsuga menziesii [Mirbel] Franco) and Norway spruce (Picea abies (L.) Karst). For both Douglas-fir and Norway spruce wide variation in growth performance were detected. Populations of Douglas-fir identified by the URFs to be optimum for central Europe current climate and climate change scenarios originate from western Cascades and coastal areas of British Columbia, Washington and Oregon. The current seed stands of Douglas-fir in North America, providing planting materials for Central Europe under the legal framework of the Organization for Economic Cooperation and Development (OECD) were found to be suitable for under future conditions. In case of Norway spruce provenances originating from warm and drier regions of south east Europe were found to be suitable for central Europe under future conditions. Even though calibrated with data from Central Europe, when applied as SDMs, the URFs predicted the observed occurrence of Douglas-fir in its native range in North America with reasonable accuracy compared to contemporary SDMs developed in North America. For both Douglas-fir and Norway spruce significant variation in habitat suitability was found depending on the planted population or seed source indicating the role of intraspecific variation in buffering effects of climate change.

The importance of XRD analysis in provenance and palaeoenvironmental studies of the Piedras de Afilar Formation, Neoproterozoic of Uruguay

NASA Astrophysics Data System (ADS)

Pamoukaghlian, K.; Poiré, D. G.; Gaucher, C.; Uriz, N.; Cingolani, C.; Frigeiro, P.

2009-04-01

The Piedras de Afilar Formation crops out in the southeast part of Uruguay, forming part of the Tandilia Terrane (sensu Bossi et al. 2005). Pamoukaghlian et al. (2006) and Gaucher et al. (2008) have published δ13C, δ18O and U/Pb SHRIMP results, which indicate a Neoproterozoic age for this formation. The palaeoenvironment has been defined as a shallow marine platform based on the presence of interference ripples, hummocky and mega-hummocky cross-stratification. X-ray diffraction (XRD) analyses help to better constrain the palaeoenvironment: the presence of chlorite/smectite found in black shales, suggest a reducing environment, and abundant illite indicates a cold to temperate climate. Provenance studies have been undertaken that utilise a combination of detailed palaeocurrent measurements, petrographic descriptions, XRD analyses, and geochemical isotopic analyses, including U/Pb SHRIMP determinations. Mineral compositional diagrams for sandstones suggest a stable cratonic provenance. Palaeocurrents are mainly from the NNE, indicating a provenance from the cratonic areas of the Tandilia Terrane. The illite crystal index indicates diagenetic to low-metamorphic conditions for the sequence; this is important to confirm that the identified minerals are authigenic. Clay minerals identified by XRD analysis of sandstones from the siliciclastic member are illite (80 - 90%), kaolinite (5 - 10%), and chlorite (5 - 10%). This is consistent with a provenance from the cratonic areas (quartz-feldspar dominated rock types). Isotopic analyses have been undertaken to provide better constraints on the tectonic setting. U/Pb SHRIMP ages for the youngest zircons are 990 Ma (Gaucher et al. 2008), and the basal granite (Granito de la Paz) is 2056 ± 11 Ma (Hartmann et al. 2001), suggesting a provenance from the Archaean basement for the Piedras de Afilar Formation, like its counterparts in the Rio de la Plata Craton. References Bossi, J., Piñeyro, D., Cingolani, C. (2005). El límite norte del Terreno Piedra Alta (Uruguay). Importancia de la faja milonítica sinestral de Colonia. Actas XVI Congreso Argentino de Geología, de La Plata. Gaucher, C., Poiré, D.G., Finney, S.C., Valencia, V.a., Blanco, G., Pamoukaghlian, K., Gómez Peral, L. (2008). Detrital zircón ages of Neoproterozoic sedimentary successions in Uruguay and Argentina: Insights into the geological evolution of the Rio de la Plata Craton. Precambrian Research. Hartmann, L.A., Campal, N., Santos, J.O., Mc. Neughton, N.J., Schipilov, A., Lafon, J.M. (2001). Archean crust in the Rio de la Plata Craton, Uruguay - SHRIMP U-Pb zircon reconnaissance geochronology. Journal of South American Earth Science, 14, 557-570. Pamoukaghlian, K., Gaucher, C., Bossi, J., Sial, N., Poire, D.G. (2006). First C and O isotopic data for the Piedras de Afilar Formation, Tandilia Terrane, Uruguay: their bearing on correlation and age. Fifth South American Symposium on Isotope Geology, Punta del Este.

Black and red granites in the Egyptian Antiquity Museum of Turin. A minero-petrographic and provenance study.

NASA Astrophysics Data System (ADS)

Serra, M.; Borghi, A.; Vaggelli, G.; D'Amicone, E.; Vigna, L.

2009-04-01

The University of Turin, in cooperation with the Egyptian Antiquity Museum, has recently undertaken several projects aimed at developing a scientific approach to the analysis of ancient Egyptian finds. In particular, a straightforward project to investigate the stony handcrafts preserved in the statuary rooms started in 2006 to obtain their systematic petrographic classification and their possible geological sources. The main intent of the project was to understand the provenance of the materials used in Pharaonic period, setting the base for the identification of the ancient quarry sites and for a correct interpretation of the extraction and working techniques, in order to provide fundamental information about economical and social development of Egyptian civilization through historical times. The choice to focus attention on black and red granites came from the statement of the percentage relevance (40 of the 54 sculptures actually exposed) of these materials in the statuary rooms. Moreover, especially for black granites, the need of detailed minero-petrographic analysis arose from the difficulty in making a macroscopic classification of the fine-grained dark-coloured rock varieties. Therefore, five black granite statues, belonging to the Drovetti collection were sampled in a micro-invasive way: three sculptures of goddess Sekhmet (cat. 260, 251, 247), the statue of Ramses II (cat. 1380) and the statue of goddess Hathor (cat. 694). The choice to analyse even three of the twenty-one statues of goddess Sekhmet (cat. 247, cat. 251, cat. 260), originally located in the same Egyptian temple but ichnographically different, derived from the need of answering the archaeological questions about their provenance. On the other hand, the opportunity of studying the fine-grained black rocks used for the sculptures of goddess Hathor (cat. 694) and of Ramses II in Majesty (cat. 1380), symbol of the Egyptian museum of Turin, provided the opportunity to analyse and classify the materials used for two of the best known masterpieces of Egyptian art. As regards to red granites, it has been observed that most of the exposed sculptures were made of rocks closely akin to Aswan granite. Just in one case, the Ram headed sphinx (cat. 836), macroscopic differences in colour index, grain size and isoorientation of feldspar phenocrysts, suggested a different provenance of the source material and determined the choice of picking up a small fragment for minero-petrographic analysis. The sample collected from the sarcophagus of Nefertari (suppl. 5153) during the recent restoration of the sculpture, was analysed in order to test the accuracy of the results, as the provenance of the material used for its realization was already certain. Petrographic observations and chemical analysis were undertaken by a scanning electron microscope equipped with an energy-dispersive spectrometer. Minero-petrographic data primarily showed that all samples vary in composition from granite (red granites) to granodiorite and tonalite (black granites). The main sialic phases are represented by plagioclase (albite to oligoclase), alkali-feldspar (microcline) and quartz, while femic phases are amphibole (green horneblende) and biotite (Fe- to Mg-biotite), always coexisting in variable relative percentages. Minor amount of apatite (≈ 1 wt.%), magnetite, ilmenite, often associated to sphene, zircon, pyrite and allanite also occur. The identification of some compositional markers in all samples suggested a common provenance for all the rocks used for the sculptures. Thus, it was supposed that they could all have been quarried in the famous district of Aswan, well known at least since Dynastic period. This provenance hypothesis was confirmed by geological literature and archeological evidences, considering the relative proximity of Aswan quarries to Nile river and to the key centres of power in the New Kingdom. Therefore, several geological samples were collected in Aswan area, in order to perform a minero - petrographical and geochemical comparison with the rocks of the statues. According to the petrographic and minero-chemical results, it was possible to define the provenance of the granitoids used for the realization of the sculptures and finally to highlight the importance of an archaeometric approach to historical and archaeological problems.

Fourth order exponential time differencing method with local discontinuous Galerkin approximation for coupled nonlinear Schrodinger equations

DOE PAGES

Liang, Xiao; Khaliq, Abdul Q. M.; Xing, Yulong

2015-01-23

In this paper, we study a local discontinuous Galerkin method combined with fourth order exponential time differencing Runge-Kutta time discretization and a fourth order conservative method for solving the nonlinear Schrödinger equations. Based on different choices of numerical fluxes, we propose both energy-conserving and energy-dissipative local discontinuous Galerkin methods, and have proven the error estimates for the semi-discrete methods applied to linear Schrödinger equation. The numerical methods are proven to be highly efficient and stable for long-range soliton computations. Finally, extensive numerical examples are provided to illustrate the accuracy, efficiency and reliability of the proposed methods.

A case of acute kidney injury caused by granulomatous interstitial nephritis associated with sarcoidosis.

PubMed

Horino, Taro; Matsumoto, Tatsuki; Inoue, Kosuke; Ichii, Osamu; Terada, Yoshio

2018-05-01

Sarcoidosis affects multiple organs including lung, heart and kidney. Sarcoidosis causes hypercalcemia, hypergammaglobulinemia, and rarely, granulomatous interstitial nephritis, resulting in renal stromal damage. Granulomatous interstitial nephritis is characterized as interstitial nephritis with noncaseating epithelioid granulomas. Diagnosing granulomatous interstitial nephritis before patient's death is challenging; hence, only few cases proven by renal biopsy have been reported till date. We present a case of acute kidney injury caused by granulomatous interstitial nephritis as a renal manifestation of sarcoidosis proven by renal biopsy, which can be confirmed by 18 F-fluorodeoxyglucose positron emission tomography/computed tomography. Glucocorticoid therapy was helpful for improving and maintaining her renal function over a 6-year period.

Stem cell secretome-rich nanoclay hydrogel: a dual action therapy for cardiovascular regeneration

NASA Astrophysics Data System (ADS)

Waters, Renae; Pacelli, Settimio; Maloney, Ryan; Medhi, Indrani; Ahmed, Rafeeq P. H.; Paul, Arghya

2016-03-01

A nanocomposite hydrogel with photocrosslinkable micro-porous networks and a nanoclay component was successfully prepared to control the release of growth factor-rich stem cell secretome. The proven pro-angiogenic and cardioprotective potential of this new bioactive system provides a valuable therapeutic platform for cardiac tissue repair and regeneration.A nanocomposite hydrogel with photocrosslinkable micro-porous networks and a nanoclay component was successfully prepared to control the release of growth factor-rich stem cell secretome. The proven pro-angiogenic and cardioprotective potential of this new bioactive system provides a valuable therapeutic platform for cardiac tissue repair and regeneration. Electronic supplementary information (ESI) available. See DOI: 10.1039/c5nr07806g

The case for physician assisted suicide: how can it possibly be proven?

PubMed Central

Dahl, E; Levy, N

2006-01-01

In her paper, The case for physician assisted suicide: not (yet) proven, Bonnie Steinbock argues that the experience with Oregon's Death with Dignity Act fails to demonstrate that the benefits of legalising physician assisted suicide outweigh its risks. Given that her verdict is based on a small number of highly controversial cases that will most likely occur under any regime of legally implemented safeguards, she renders it virtually impossible to prove the case for physician assisted suicide. In this brief paper, we suggest some ways that may enable us to weigh the risks and benefits of legalisation more fairly and, hopefully, allow us to close the case for physician assisted suicide. PMID:16731731

Through Life Costing

NASA Astrophysics Data System (ADS)

Newnes, Linda; Mileham, A. R.; Cheung, W. M.; Goh, Y. M.

When an innovation is launched in such a market, reliable information about the life cost of the novel product is naturally lacking. This has proven to be a key obstacle to venture capital funded cleantech companies with innovations that are conceptually proven and that deliver significant improvements to conventional alternatives, but that lack enough reference installations to provide reliable data on life costs. One way out of this dilemma that is increasingly discussed among practitioners is servitization, i.e., the notion that the owner of the innovation should be an agency that is specialised in using and maintaining the product, letting the end customer become a buyer of the product's service (such as heat) rather than the product itself.

Australian bat lyssavirus: implications for public health.

PubMed

Francis, Joshua R; McCall, Bradley J; Hutchinson, Penny; Powell, Jodie; Vaska, Vikram L; Nourse, Clare

2014-12-11

Australian bat lyssavirus (ABLV) infection in humans is rare but fatal, with no proven effective therapy. ABLV infection can be prevented by administration of a post-exposure prophylaxis regimen of human rabies immunoglobulin and rabies vaccine. All Australian bats (flying foxes and microbats) should be considered to be carrying ABLV unless proven otherwise. Any bat-related injury (bite, scratch or mucosal exposure to bat saliva or neural tissue) should be notified immediately to the relevant public health unit - no matter how small the injury or how long ago it occurred. Human-to-human transmission of ABLV has not been reported but is theoretically possible. Standard infection control precautions should be employed when managing patients with suspected or confirmed ABLV infection.

Constipation and the preached trio: diet, fluid intake, exercise.

PubMed

Annells, Merilyn; Koch, Tina

2003-11-01

A survey of 90 older community-dwelling people's constipation experience is reported in part. The focus is the participants' efforts to use diet, fluid intake and exercise as preventive strategies. Most feel that they have been preached to in this regard. However, constraints may prevent full adherence to the trio and although some have gained from diet adjustment, the majority is disillusioned about these strategies. Nurses should be aware that scientific and medical literature is discussing evidence that dietary fibre intake preventing constipation is not proven, that fluid intake does not necessarily determine stool bulk or speed colon transit time, and that there is no proven link between exercise levels and chronic constipation.

Genetically engineered mouse models for epithelial ovarian cancer: are we there yet?

PubMed

Howell, Viive M

2014-03-01

The development of preclinical spontaneous genetically engineered mouse models (GEMMs) requires an understanding of the genetic basis of the human disease. Such robust models have proven invaluable for increasing understanding of human malignancies as well as identifying new biomarkers and testing new therapies for these diseases. While GEMMs have been reported for ovarian cancer, the majority have proven disappointing overall in their recapitulation of paired genetic and histological features especially for serous ovarian epithelial cancer. This review describes GEMMs for ovarian cancer, in particular, high grade serous ovarian cancer and assesses these in light of recent changes in our understanding of the human malignancy. Copyright © 2014 Elsevier Ltd. All rights reserved.

Advance in diagnosis of female genital tract tumor with laser fluorescence

NASA Astrophysics Data System (ADS)

Ding, Ai-Hua; Tseng, Quen; Lian, Shao-Hui

1998-11-01

In order to improve the diagnostic accuracy of malignant tumors with laser fluorescence, in 1996, our group successfully created the computerized laser fluorescence spectrograph type II with more reliable images shown overshadowing the naked eye method before 74 cases of female genital tract diseases had been examined by the LFS II resulting in 10 positive cases which were also proven pathologically as malignant tumors, without nay false negative, 3 cases presented suspicious positive but all were proven pathologically as non-tumors lesions, the false positive rate was 4 percent. Our work showed that the method of LFS II can provide a more rapid and accurate diagnosis for the clinical malignant tumors.

Unified reduction principle for the evolution of mutation, migration, and recombination

PubMed Central

Altenberg, Lee; Liberman, Uri; Feldman, Marcus W.

2017-01-01

Modifier-gene models for the evolution of genetic information transmission between generations of organisms exhibit the reduction principle: Selection favors reduction in the rate of variation production in populations near equilibrium under a balance of constant viability selection and variation production. Whereas this outcome has been proven for a variety of genetic models, it has not been proven in general for multiallelic genetic models of mutation, migration, and recombination modification with arbitrary linkage between the modifier and major genes under viability selection. We show that the reduction principle holds for all of these cases by developing a unifying mathematical framework that characterizes all of these evolutionary models. PMID:28265103

Humic acid provenance influence to the adsorption capacity in uranium and thorium removal

NASA Astrophysics Data System (ADS)

Prasetyo, E.

2018-01-01

It is common knowledge that humic acid is organic compound without certain chemical composition since it is derived from different organic materials. Further this raises question whether the different humic acid sample used could lead to different adsorbent properties e.g. adsorption capacity. To address the problem, this paper is aimed to clarify the relation between the provenances of humic acid and synthesized adsorbent properties especially adsorption capacities by quantitative and qualitative functional groups determination including discussion on their effect to the metal ion adsorption mechanism using three humic acid samples. Two commercial samples were derived from recent compost while the other extracted from tertiary carbonaceous mudstone strata.

Radio frequency energy for non-invasive and minimally invasive skin tightening.

PubMed

Mulholland, R Stephen

2011-07-01

This article reviews the non-invasive and minimally invasive options for skin tightening, focusing on peer-reviewed articles and presentations and those technologies with the most proven or promising RF non-excisional skin-tightening results for excisional surgeons. RF has been the mainstay of non-invasive skin tightening and has emerged as the "cutting edge" technology in the minimally invasive skin-tightening field. Because these RF skin-tightening technologies are capital equipment purchases with a significant cost associated, this article also discusses some business issues and models that have proven to work in the plastic surgeon's office for non-invasive and minimally invasive skin-tightening technologies. Copyright © 2011 Elsevier Inc. All rights reserved.

External-beam PIXE spectrometry for the study of Punic jewellery (SW Spain): The geographical provenance of the palladium-bearing gold

NASA Astrophysics Data System (ADS)

Ontalba Salamanca, M. Á.; Gómez-Tubío, B.; Ortega-Feliu, I.; Respaldiza, M. Á.; Luisa de la Bandera, M.; Ovejero Zappino, G.; Bouzas, A.; Gómez-Morón, A.

2006-08-01

This paper presents the study of a set of Punic gold items (400 B.C.), from the Museum of Cádiz (Spain). An external beam set-up has been employed for the absolutely non-destructive analysis of the objects. PIXE spectrometry has been performed in order to characterize the metallic alloys and the manufacturing techniques. Compositional differences have been found and soldering procedures have been identified. By comparison with the rings and other coetaneous jewellery, the presence of palladium in the bulk alloy of the earrings can be pointed out. The geographical provenance of the palladium-bearing gold is discussed based on geological and archaeological considerations.

Householder transformations and optimal linear combinations

NASA Technical Reports Server (NTRS)

Decell, H. P., Jr.; Smiley, W., III

1974-01-01

Several theorems related to the Householder transformation and separability criteria are proven. Orthogonal transformations, topology, divergence, mathematical matrices, and group theory are discussed.

Invasive fungal infection following chemotherapy for acute myeloid leukaemia-Experience from a developing country.

PubMed

Korula, Anu; Abraham, Aby; Abubacker, Fouzia N; Viswabandya, Auro; Lakshmi, Kavitha M; Abraham, O C; Rupali, Priscilla; Varghese, George M; Michael, Joy S; Srivastava, Alok; Mathews, Vikram; George, Biju

2017-10-01

The incidence of invasive fungal infections (IFI) is believed to be higher in patients with acute myeloid leukaemia (AML) undergoing chemotherapy in non-HEPA-filtered rooms. The aim of this study is to review the incidence of IFI in a large cohort of patients with AML treated at a single centre in India. Two hundred and twenty-two patients with AML treated with either induction chemotherapy or salvage chemotherapy between 2008 and 2013 were studied retrospectively. IFI was defined as per the revised EORTC-MSG criteria. Data on type of chemotherapy, prophylactic strategies, engraftment (ANC>500), the presence of IFI and survival were collected. IFI was diagnosed in 86 patients (38.7%) with proven IFI in 12 (5.4%). Use of posaconazole prophylaxis (P=.001) was the only factor associated with reduced incidence of IFI. Survival in patients with proven IFI was lower than those without proven IFI, but not statistically significant (59.4% vs 78.5%; P=.139). There is a high incidence of IFI during induction chemotherapy for acute myeloid leukaemia in developing countries. Posaconazole prophylaxis was associated with a significantly lower incidence of IFI. Optimal yet cost-effective strategies for prevention and early diagnosis of IFI are required to improve survival in patients undergoing chemotherapy for AML. © 2017 Blackwell Verlag GmbH.

Test plan for Geo-Cleanse{reg_sign} demonstration (in situ destruction of dense non-aqueous phase liquid (DNAPL))

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jerome, K.M.; Looney, B.B.; Accorsi, F.

1996-09-01

Soils and groundwater beneath an abandoned process sewer line in the A/M Area of the Savannah River Site (SRS) contain elevated levels of volatile organic compounds, specifically trichloroethylene (TCE) and tetrachloroethylene (PCE), two common chlorinated solvents. These compounds have low aqueous solubilities, thus when released to the subsurface in sufficient quantity, tend to exist as immiscible fluids or nonaqueous phase liquids (NAPLs). Because chlorinated solvents are also denser than water, they are referred to by the acronym DNAPLs, or dense non-aqueous phase liquids. Technologies targeted at the efficient characterization or removal of DNAPL are not currently proven. For example, mostmore » DNAPL studies rely on traditional soil and water sampling and the fortuitous observation of immiscible solvent. Once DNAPL is identified, soil excavation (which is only applicable to small contained spill sites) is the only proven cleanup method. New cleanup approaches based on destruction of DNAPL either in situ or ex situ have been proposed and tested at the pilot scale. The proposed demonstration, as described in this report will evaluate the applicability to DNAPL plumes of a technology proven for in situ destruction of light non-aqueous phase liquids (LNAPLs) such as oils.« less

Triangulating the provenance of African elephants using mitochondrial DNA

PubMed Central

Ishida, Yasuko; Georgiadis, Nicholas J; Hondo, Tomoko; Roca, Alfred L

2013-01-01

African elephant mitochondrial (mt) DNA follows a distinctive evolutionary trajectory. As females do not migrate between elephant herds, mtDNA exhibits low geographic dispersal. We therefore examined the effectiveness of mtDNA for assigning the provenance of African elephants (or their ivory). For 653 savanna and forest elephants from 22 localities in 13 countries, 4258 bp of mtDNA was sequenced. We detected eight mtDNA subclades, of which seven had regionally restricted distributions. Among 108 unique haplotypes identified, 72% were found at only one locality and 84% were country specific, while 44% of individuals carried a haplotype detected only at their sampling locality. We combined 316 bp of our control region sequences with those generated by previous trans-national surveys of African elephants. Among 101 unique control region haplotypes detected in African elephants across 81 locations in 22 countries, 62% were present in only a single country. Applying our mtDNA results to a previous microsatellite-based assignment study would improve estimates of the provenance of elephants in 115 of 122 mis-assigned cases. Nuclear partitioning followed species boundaries and not mtDNA subclade boundaries. For taxa such as elephants in which nuclear and mtDNA markers differ in phylogeography, combining the two markers can triangulate the origins of confiscated wildlife products. PMID:23798975

Electroconvulsive therapy stimulus titration: Not all it seems.

PubMed

Rosenman, Stephen J

2018-05-01

To examine the provenance and implications of seizure threshold titration in electroconvulsive therapy. Titration of seizure threshold has become a virtual standard for electroconvulsive therapy. It is justified as individualisation and optimisation of the balance between efficacy and unwanted effects. Present day threshold estimation is significantly different from the 1960 studies of Cronholm and Ottosson that are its usual justification. The present form of threshold estimation is unstable and too uncertain for valid optimisation or individualisation of dose. Threshold stimulation (lowest dose that produces a seizure) has proven therapeutically ineffective, and the multiples applied to threshold to attain efficacy have never been properly investigated or standardised. The therapeutic outcomes of threshold estimation (or its multiples) have not been separated from simple dose effects. Threshold estimation does not optimise dose due to its own uncertainties and the different short-term and long-term cognitive and memory effects. Potential harms of titration have not been examined. Seizure threshold titration in electroconvulsive therapy is not a proven technique of dose optimisation. It is widely held and practiced; its benefit and harmlessness assumed but unproven. It is a prematurely settled answer to an unsettled question that discourages further enquiry. It is an example of how practices, assumed scientific, enter medicine by obscure paths.

Using Computer-extracted Image Phenotypes from Tumors on Breast MRI to Predict Breast Cancer Pathologic Stage

PubMed Central

Burnside, Elizabeth S.; Drukker, Karen; Li, Hui; Bonaccio, Ermelinda; Zuley, Margarita; Ganott, Marie; Net, Jose M.; Sutton, Elizabeth; Brandt, Kathleen R.; Whitman, Gary; Conzen, Suzanne; Lan, Li; Ji, Yuan; Zhu, Yitan; Jaffe, Carl; Huang, Erich; Freymann, John; Kirby, Justin; Morris, Elizabeth; Giger, Maryellen

2015-01-01

Background To demonstrate that computer-extracted image phenotypes (CEIPs) of biopsy-proven breast cancer on MRI can accurately predict pathologic stage. Methods We used a dataset of de-identified breast MRIs organized by the National Cancer Institute in The Cancer Imaging Archive. We analyzed 91 biopsy-proven breast cancer cases with pathologic stage (stage I = 22; stage II = 58; stage III = 11) and surgically proven nodal status (negative nodes = 46, ≥ 1 positive node = 44, no nodes examined = 1). We characterized tumors by (a) radiologist measured size, and (b) CEIP. We built models combining two CEIPs to predict tumor pathologic stage and lymph node involvement, evaluated them in leave-one-out cross-validation with area under the ROC curve (AUC) as figure of merit. Results Tumor size was the most powerful predictor of pathologic stage but CEIPs capturing biologic behavior also emerged as predictive (e.g. stage I+II vs. III demonstrated AUC = 0.83). No size measure was successful in the prediction of positive lymph nodes but adding a CEIP describing tumor “homogeneity,” significantly improved this discrimination (AUC = 0.62, p=.003) over chance. Conclusions Our results indicate that MRI phenotypes show promise for predicting breast cancer pathologic stage and lymph node status. PMID:26619259

A comparative study of three tissue-cultured Dendrobium species and their wild correspondences by headspace gas chromatography-mass spectrometry combined with chemometric methods.

PubMed

Chen, Nai-Dong; You, Tao; Li, Jun; Bai, Li-Tao; Hao, Jing-Wen; Xu, Xiao-Yuan

2016-10-01

Plant tissue culture technique is widely used in the conservation and utilization of rare and endangered medicinal plants and it is crucial for tissue culture stocks to obtain the ability to produce similar bioactive components as their wild correspondences. In this paper, a headspace gas chromatography-mass spectrometry method combined with chemometric methods was applied to analyze and evaluate the volatile compounds in tissue-cultured and wild Dendrobium huoshanense Cheng and Tang, Dendrobium officinale Kimura et Migo and Dendrobium moniliforme (Linn.) Sw. In total, 63 volatile compounds were separated, with 53 being identified from the three Dendrobium spp. Different provenances of Dendrobiums had characteristic chemicals and showed remarkable quantity discrepancy of common compositions. The similarity evaluation disclosed that the accumulation of volatile compounds in Dendrobium samples might be affected by their provenance. Principal component analysis showed that the first three components explained 85.9% of data variance, demonstrating a good discrimination between samples. Gas chromatography-mass spectrometry techniques, combined with chemometrics, might be an effective strategy for identifying the species and their provenance, especially in the assessment of tissue-cultured Dendrobium quality for use in raw herbal medicines. Copyright © 2016. Published by Elsevier B.V.

Magnetic Susceptibility and Mineral Zonations Controlled by Provenance in Loess along the Illinois and Central Mississippi River Valleys

USGS Publications Warehouse

Grimley, D.A.; Follmer, L.R.; McKay, E.D.

1998-01-01

Magnetic susceptibility (MS) patterns have proven useful for regional stratigraphic correlations of zones within thick, oxidized Peoria and Roxana Silts along the Illinois and Central Mississippi River valleys for more than 350 km. Variations in MS of C horizon loess are controlled by silt-sized magnetite content and are interpreted to reflect changes in sediment provenance due to fluctuations of the Superior and Lake Michigan glacier lobes and the diversion of the Mississippi River to its present course. Grain size distributions and scanning electron microscopic observations indicate that stratigraphic changes in MS are not significantly influenced by eolian sorting or diagenetic dissolution, respectively. Three compositional zones (lower, middle, and upper) are delineated within Peoria Silt which usually can be traced in the field by MS, the occurrence of clay beds, interstadial soils, and/or subtle color changes. These zones can be correlated with, but are generally of more practical use than, previously studied dolomite zones (McKay, 1977) or clay mineral zones (Frye et al., 1968). However, mineralogical analyses can help to substantiate zone boundaries when in question. MS and compositional zones may indirectly record a climatic signal, primarily through the effect that global cooling has had on ice lobe fluctuations in the Upper Mississippi drainage basin. ?? 1998 University of Washington.

A proven knowledge-based approach to prioritizing process information

NASA Technical Reports Server (NTRS)

Corsberg, Daniel R.

1991-01-01

Many space-related processes are highly complex systems subject to sudden, major transients. In any complex process control system, a critical aspect is rapid analysis of the changing process information. During a disturbance, this task can overwhelm humans as well as computers. Humans deal with this by applying heuristics in determining significant information. A simple, knowledge-based approach to prioritizing information is described. The approach models those heuristics that humans would use in similar circumstances. The approach described has received two patents and was implemented in the Alarm Filtering System (AFS) at the Idaho National Engineering Laboratory (INEL). AFS was first developed for application in a nuclear reactor control room. It has since been used in chemical processing applications, where it has had a significant impact on control room environments. The approach uses knowledge-based heuristics to analyze data from process instrumentation and respond to that data according to knowledge encapsulated in objects and rules. While AFS cannot perform the complete diagnosis and control task, it has proven to be extremely effective at filtering and prioritizing information. AFS was used for over two years as a first level of analysis for human diagnosticians. Given the approach's proven track record in a wide variety of practical applications, it should be useful in both ground- and space-based systems.

Warming and provenance limit tree recruitment across and beyond the elevation range of subalpine forest

USGS Publications Warehouse

Kueppers, Lara M.; Conlisk, Erin; Castanha, Cristina; Moyes, Andrew B.; Germino, Matthew; de Valpine, Perry; Torn, Margaret S.; Mitton, Jeffry B.

2017-01-01

Climate niche models project that subalpine forest ranges will extend upslope with climate warming. These projections assume that the climate suitable for adult trees will be adequate for forest regeneration, ignoring climate requirements for seedling recruitment, a potential demographic bottleneck. Moreover, local genetic adaptation is expected to facilitate range expansion, with tree populations at the upper forest edge providing the seed best adapted to the alpine. Here, we test these expectations using a novel combination of common gardens, seeded with two widely distributed subalpine conifers, and climate manipulations replicated at three elevations. Infrared heaters raised temperatures in heated plots, but raised temperatures more in the forest than at or above treeline because strong winds at high elevation reduced heating efficiency. Watering increased season-average soil moisture similarly across sites. Contrary to expectations, warming reduced Engelmann spruce recruitment at and above treeline, as well as in the forest. Warming reduced limber pine first-year recruitment in the forest, but had no net effect on fourth-year recruitment at any site. Watering during the snow-free season alleviated some negative effects of warming, indicating that warming exacerbated water limitations. Contrary to expectations of local adaptation, low-elevation seeds of both species initially recruited more strongly than high-elevation seeds across the elevation gradient, although the low-provenance advantage diminished by the fourth year for Engelmann spruce, likely due to small sample sizes. High- and low-elevation provenances responded similarly to warming across sites for Engelmann spruce, but differently for limber pine. In the context of increasing tree mortality, lower recruitment at all elevations with warming, combined with lower quality, high-provenance seed being most available for colonizing the alpine, portends range contraction for Engelmann spruce. The lower sensitivity of limber pine to warming indicates a potential for this species to become more important in subalpine forest communities in the coming centuries.

Warming and provenance limit tree recruitment across and beyond the elevation range of subalpine forest.

PubMed

Kueppers, Lara M; Conlisk, Erin; Castanha, Cristina; Moyes, Andrew B; Germino, Matthew J; de Valpine, Perry; Torn, Margaret S; Mitton, Jeffry B

2017-06-01

Climate niche models project that subalpine forest ranges will extend upslope with climate warming. These projections assume that the climate suitable for adult trees will be adequate for forest regeneration, ignoring climate requirements for seedling recruitment, a potential demographic bottleneck. Moreover, local genetic adaptation is expected to facilitate range expansion, with tree populations at the upper forest edge providing the seed best adapted to the alpine. Here, we test these expectations using a novel combination of common gardens, seeded with two widely distributed subalpine conifers, and climate manipulations replicated at three elevations. Infrared heaters raised temperatures in heated plots, but raised temperatures more in the forest than at or above treeline because strong winds at high elevation reduced heating efficiency. Watering increased season-average soil moisture similarly across sites. Contrary to expectations, warming reduced Engelmann spruce recruitment at and above treeline, as well as in the forest. Warming reduced limber pine first-year recruitment in the forest, but had no net effect on fourth-year recruitment at any site. Watering during the snow-free season alleviated some negative effects of warming, indicating that warming exacerbated water limitations. Contrary to expectations of local adaptation, low-elevation seeds of both species initially recruited more strongly than high-elevation seeds across the elevation gradient, although the low-provenance advantage diminished by the fourth year for Engelmann spruce, likely due to small sample sizes. High- and low-elevation provenances responded similarly to warming across sites for Engelmann spruce, but differently for limber pine. In the context of increasing tree mortality, lower recruitment at all elevations with warming, combined with lower quality, high-provenance seed being most available for colonizing the alpine, portends range contraction for Engelmann spruce. The lower sensitivity of limber pine to warming indicates a potential for this species to become more important in subalpine forest communities in the coming centuries. © 2016 John Wiley & Sons Ltd.

Detrital Zircon Provenance Record of Pre-Andean to Modern Tectonics in the Northern Andes: Examples from Peru, Ecuador, and Colombia

NASA Astrophysics Data System (ADS)

George, S. W. M.; Jackson, L. J.; Horton, B. K.

2015-12-01

Detrital zircon U-Pb age distributions from modern rivers and Mesozoic-Cenozoic basin fill in the northern Andes provide insights into pre-Andean, Andean, and active uplift and exhumation of distinctive sediment source regions. Diagnostic age signatures enable straightforward discrimination of competing sediment sources within the Andean magmatic arc (Western Cordillera-Central Cordillera), retroarc fold-thrust belt (Eastern Cordillera-Subandean Zone), and Amazonian craton (composed of several basement provinces). More complex, however, are the mid/late Cenozoic provenance records generated by recycling of basin fill originally deposited during early/mid Mesozoic extension, late Mesozoic thermal subsidence, and early Cenozoic shortening. Although subject to time-transgressive trends, regionally significant provenance patterns in Peru, Ecuador, and Colombia reveal: (1) Triassic-Jurassic growth of extensional subbasins fed by local block uplifts (with commonly unimodal 300­-150 Ma age peaks); (2) Cretaceous deposition in an extensive postrift setting fed by principally cratonic sources (with common 1800-900 Ma ages); and (3) Cenozoic growth of a broad flexural basin fed initially fed by magmatic-arc rocks (100-0 Ma), then later dominance by thrust-belt sedimentary rocks with progressively greater degrees of basin recycling (yielding diverse and variable age populations from the aforementioned source regions). U-Pb results from modern rivers and smaller subbasins prove useful in evaluating source-to-sink relationships, downstream mixing relationships, hinterland-foreland basin connectivity, paleodrainage integration, and tectonic/paleotopographic reconstructions. Most but not all of the elevated intermontane basins in the modern hinterland of the northern Andes contain provenance records consistent with genesis in a broader foreland basin developed at low elevation. Downstream variations within modern axial rivers and Cenozoic axial basins inform predictive models of Andean contributions from the >1500 km Marañon river to the broader Amazon drainage system, and help pinpoint the late Miocene birth of the >1500 km Magdalena river and associated submarine fan along the southern Caribbean margin.

Mineralogy of Nicobar Fan turbidites (IODP Leg 362): Himalayan provenance and diagenetic control.

NASA Astrophysics Data System (ADS)

Limonta, M.; Garzanti, E.; Ando, S.; Carter, A.; Milliken, K. L.; Pickering, K. T.

2017-12-01

In this study we use quantitative petrographic and heavy-mineral data on silt-sized and sand-sized sediments from the Nicobar Fan turbiditic depositional system to unravel their provenance and discriminate between pre-depositional and post-depositional processes controlling sediment mineralogy. Eighteen samples from the two drill sites U1480 e U1481, collected down to a depth of 1400 m during International Ocean Discovery Expedition 362, were selected for analysis. A complete section of the sedimentary section overlying oceanic basaltic basement was recovered at the U1480 drill site, whereas the U1481 drill site, located 35 km to the southeast, focused on the deeper interval of the sedimentary section overlying oceanic basement. Here we illustrate the compositional trends observed throughout the recovered succession, and compare heavy-mineral suites characterizing sediments drilled at the two U1480 and U1481 sites to check for potential differences in sediment provenance over a relatively short distance in trench settings. Diagenetic control with increasing burial depth was also specifically investigated. In Pleistocene sediments at depths of a few tens of meters only, rich heavy-mineral assemblages include mainly hornblende, epidote, and garnet, associated with apatite, clinopyroxene, tourmaline, sillimanite, kyanite, zircon, titanite, and rare staurolite and rutile, testifying to long-distance provenance from the Himalayan range via the Ganga-Brahmaputra fluvio-deltaic-turbiditic system. Heavy-mineral concentration shows a progressive decrease with burial depth, pointing to selective diagenetic dissolution of less durable detrital minerals. Clinopyroxene becomes rare below 400 m depth and was not recorded below 500 m depth, where amphibole decreases notably in relative abundance. More durable heavy minerals, including zircon, tourmaline, apatite, garnet and epidote, consequently tend to be relatively enriched with increasing age and burial depth. Petrographic and heavy-mineral data, combined with biostratigraphic, paleomagnetic, and geochemical evidence, allow us to unravel the sedimentary history of the Nicobar Fan as related to Himalayan uplift, erosion, and monsoon development during the last 10 Ma.

Basin evolution during the transition from continental rifting to subduction: Evidence from the lithofacies and modal petrology of the Jurassic Latady Group, Antarctic Peninsula

NASA Astrophysics Data System (ADS)

Willan, Robert C. R.; Hunter, Morag A.

2005-12-01

The Jurassic Latady Basin (southern Antarctic Peninsula) developed in a broad rift zone associated with the early stages of Gondwana extension. Early Jurassic sedimentation (˜185 Ma) occurred in small, isolated terrestrial to lacustrine rift basins in the present-day northwest and west and became shallow marine by the early Middle Jurassic. Quantitative modal analysis reveals a high proportion of mature, quartzose sandstone derived from cratonic and quartzose recycled-orogen provenances, most likely in the direction of the Ellsworth-Whitmore Mountains in the Gondwana interior. Sandstones with a more volcanolithic provenance probably represent an influx of sands from a Permian volcanic source in West Antarctica. The Early Jurassic Latady sequence contains abundant volcanic quartz and rhyodacite grains, locally derived from the nearby ignimbrites of the rift-related Mount Poster Formation (˜185 Ma). Between the Middle and Late Jurassic (?160-150 Ma), there was a dramatic change throughout the Latady Basin to higher-energy conditions with marked lateral facies variations. Sandstones contain abundant fresh volcanic detritus and plot in the transitional arc field. Their source was a nearby, active continental margin arc, but there is no outcrop of arc material on the Antarctic Peninsula from this time. A possible source area is preserved on the Thurston Island block to the southwest. However, some fluvial systems still had access to areas of uplifted metamorphic/plutonic basement and quartzose, cratonic sources. Evidence of mixing of fluvial systems from different provenances and the lack of mixing of other fluvial systems suggest a complex topography of variably uplifted fault blocks with fluvial systems constrained in narrow valleys. The change from continental rift- to arc-related sources illustrates the shift from plume- (continental provenances) to continental margin arc-dominated tectonics. Thermal relaxation in the Late Jurassic led to the final phase of deposition in anoxic, deep-water conditions in a sediment-starved marine basin stretching from Ellsworth northward into southern South America.

The Correlation between Radon Emission Concentration and Subsurface Geological Condition

NASA Astrophysics Data System (ADS)

Kuntoro, Yudi; Setiawan, Herru L.; Wijayanti, Teni; Haerudin, Nandi

2018-03-01

Exploration activities with standard methods have already encountered many obstacles in the field. Geological survey is often difficult to find outcrop because they are covered by vegetation, alluvial layer or as a result of urban development and housing. Seismic method requires a large expense and licensing in the use of dynamite is complicated. Method of gravity requires the operator to go back (looping) to the starting point. Given some of these constraints, therefore it needs a solution in the form of new method that can work more efficiently with less cost. Several studies in various countries have shown a correlation between the presence of hydrocarbons and Radon gas concentration in the earth surface. By utilizing the properties of Radon that can migrate to the surface, the value of Radon concentration in the surface is suggested to provide information about the subsurface structure condition. Radon is the only radioactive substance that gas-phased at atmospheric temperature. It is very abundant in the earth mantle. The vast differences of temperatures and pressures between the mantle and the earth crust cause the convection flow toward earth surface. Radon in gas phase will be carried by convection flow to the surface. The quantity of convection currents depend on the porosity and permeability of rocks where Radon travels within, so that Radon concentration in the earth surface delineates the porosity and permeability of subsurface rock layers. Some measurements were carried out at several locations with various subsurface geological conditions, including proven oil fields, proven geothermal field, and frontier area as a comparison. These measurements show that the average and the background concentration threshold in the proven oil field (11,200 Bq/m3) and proven geothermal field (7,820 Bq/m3) is much higher than the quantity in frontier area (329 and 1,620 Bq/m3). Radon concentration in the earth surface is correlated with the presence of geological faults. Peak concentrations of Radon takes place along the fault.

["Wise be aware of your sayings"--about gaps between epidemiological data base, experimental results and decision making in health administration].

PubMed

Hefer, Elioz

2005-12-01

When scientific researches are being published one should consider carefully the different possible influences which may change the results. These influences may be of two kinds: Non-Causal explanations, and Casual explanations. Researchers may arrive at their results and not have considered all the causative explanations. Occams's Razor is the basic rule by which most reasonable explanations are chosen. A statistical result and an appropriate simple theory to explain it, is not sufficient to prove causative effect. In many cases though, the media and public tend to accept a statistically significant result as if it was a proven cause and effect relation. There are several conditional demands called Bradford Hill criteria of which epidemiological data and results are only one, the more results arrived by using the Bradford Hill criteria, the better chances exist that the examined variable is the cause for the effect. Finally, there is a gap between a proven causal factor for disease or the harmful effects of treatment and a "clear cut" health policy. There are several intermediate powerful influences which are involved in the process of stating a new health policy. These influences include among others, the involvement of decision makers, political influences and civil service professionals. As an example three different issues of a well proven clinical research will be presented. The research of Rofecoxib = "Vioxx" cardiac effects, the research of Hormonal Replacement Treatment health effects on post menopausal women and the last of Health risks presented by mobile phone use. Although the results of those researches were proven to be statistically significant, Health Policy in each case is different and less clear. Health Policy is not based solely on figures and statistical results, but rather on a far wider and more complex influences and judgment.

Provenance and paleogeography of the Devonian Durazno Group, southern Parana Basin in Uruguay

NASA Astrophysics Data System (ADS)

Uriz, N. J.; Cingolani, C. A.; Basei, M. A. S.; Blanco, G.; Abre, P.; Portillo, N. S.; Siccardi, A.

2016-03-01

A succession of Devonian cover rocks occurs in outcrop and in the subsurface of central-northern Uruguay where they were deposited in an intracratonic basin. This Durazno Group comprises three distinct stratigraphic units, namely the Cerrezuelo, Cordobés and La Paloma formations. The Durazno Group does not exceed 300 m of average thickness and preserves a transgressive-regressive cycle within a shallow-marine siliciclastic shelf platform, and is characterized by an assemblage of invertebrate fossils of Malvinokaffric affinity especially within the Lower Devonian Cordobés shales. The sedimentary provenance of the Durazno Group was determined using petrography, geochemistry, and morphological studies of detrital zircons as well as their U-Pb ages. Sandstone petrography of Cerrezuelo and La Paloma sequences shows that they have a dominantly quartz-feldspathic composition with a minor contribution of other minerals. Whole-rock geochemical data indicate that alteration was strong in each of the three formations studied; chondritic-normalized REE patterns essentially parallel to PAAS, the presence of a negative Eu-anomaly, and Th/Sc and La/Hf ratios point to an average source composition similar to UCC or slightly more felsic. Within the Cerrezuelo Formation, recycling of older volcano-metasedimentary sources is interpreted from Zr/Sc ratios and high Hf, Zr, and REE concentrations. U-Pb detrital zircon age populations of the Cerrezuelo and La Paloma formations indicate that the principal source terranes are of Neoproterozoic age, but include also minor populations derived from Mesoproterozoic and Archean-Paleoproterozoic rocks. A provenance from the Cuchilla Dionisio-Dom Feliciano, Nico Pérez and Piedra Alta terranes of Uruguay and southern Brazil is likely. This study establishes an intracratonic extensional tectonic setting during Durazno time. Considering provenance age sources, regional paleocurrent distributions and the established orogenic history recorded in SW Gondwana, we suggest that the basin fill was derived from paleohighs located in what is currently SE Uruguay.

Genetic variation at the Th2 immune gene IL13 is associated with IgE-mediated paediatric food allergy.

PubMed

Ashley, S E; Tan, H-T T; Peters, R; Allen, K J; Vuillermin, P; Dharmage, S C; Tang, M L K; Koplin, J; Lowe, A; Ponsonby, A-L; Molloy, J; Matheson, M C; Saffery, R; Ellis, J A; Martino, D

2017-08-01

Food allergies pose a considerable world-wide public health burden with incidence as high as one in ten in 12-month-old infants. Few food allergy genetic risk variants have yet been identified. The Th2 immune gene IL13 is a highly plausible genetic candidate as it is central to the initiation of IgE class switching in B cells. Here, we sought to investigate whether genetic polymorphisms at IL13 are associated with the development of challenge-proven IgE-mediated food allergy. We genotyped nine IL13 "tag" single nucleotide polymorphisms (tag SNPs) in 367 challenge-proven food allergic cases, 199 food-sensitized tolerant cases and 156 non-food allergic controls from the HealthNuts study. 12-month-old infants were phenotyped using open oral food challenges. SNPs were tested using Cochran-Mantel-Haenszel test adjusted for ancestry strata. A replication study was conducted in an independent, co-located sample of four paediatric cohorts consisting of 203 food allergic cases and 330 non-food allergic controls. Replication sample phenotypes were defined by clinical history of reactivity, 95% PPV or challenge, and IL13 genotyping was performed. IL13 rs1295686 was associated with challenge-proven food allergy in the discovery sample (P=.003; OR=1.75; CI=1.20-2.53). This association was also detected in the replication sample (P=.03, OR=1.37, CI=1.03-1.82) and further supported by a meta-analysis (P=.0006, OR=1.50). However, we cannot rule out an association with food sensitization. Carriage of the rs1295686 variant A allele was also associated with elevated total plasma IgE. We show for the first time, in two independent cohorts, that IL13 polymorphism rs1295686 (in complete linkage disequilibrium with functional variant rs20541) is associated with challenge-proven food allergy. © 2017 John Wiley & Sons Ltd.

Trace-element and Nd-isotope systematics in detrital apatite of the Po river catchment: Implications for provenance discrimination and the lag-time approach to detrital thermochronology

NASA Astrophysics Data System (ADS)

Malusà, Marco G.; Wang, Jiangang; Garzanti, Eduardo; Liu, Zhi-Chao; Villa, Igor M.; Wittmann, Hella

2017-10-01

Detrital thermochronology is often employed to assess the evolutionary stage of an entire orogenic belt using the lag-time approach, i.e., the difference between the cooling and depositional ages of detrital mineral grains preserved in a stratigraphic succession. The impact of different eroding sources to the final sediment sink is controlled by several factors, including the short-term erosion rate and the mineral fertility of eroded bedrock. Here, we use apatite fertility data and cosmogenic-derived erosion rates in the Po river catchment (Alps-Apennines) to calculate the expected percentage of apatite grains supplied to the modern Po delta from the major Alpine and Apenninic eroding sources. We test these predictions by using a cutting-edge dataset of trace-element and Nd-isotope signatures on 871 apatite grains from 14 modern sand samples, and we use apatite fission-track data to validate our geochemical approach to provenance discrimination. We found that apatite grains shed from different sources are geochemically distinct. Apatites from the Lepontine dome in the Central Alps show relative HREE enrichment, lower concentrations in Ce and U, and higher 147Sm/144Nd ratios compared to apatites derived from the External Massifs. Derived provenance budgets point to a dominant apatite contribution to the Po delta from the high-fertility Lepontine dome, consistent with the range independently predicted from cosmonuclide and mineral-fertility data. Our results demonstrate that the single-mineral record in the final sediment sink can be largely determined by high-fertility source rocks exposed in rapidly eroding areas within the drainage. This implies that the detrital thermochronology record may reflect processes affecting relatively small parts of the orogenic system under consideration. A reliable approach to lag-time analysis would thus benefit from an independent provenance discrimination of dated mineral grains, which may allow to proficiently reconsider many previous interpretations of detrital thermochronology datasets in terms of orogenic-wide steady state.

Warming and provenance limit tree recruitment across and beyond the elevation range of subalpine forest

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kueppers, Lara M.; Conlisk, Erin; Castanha, Cristina

Climate niche models project that subalpine forest ranges will extend upslope with climate warming. These projections assume that the climate suitable for adult trees will be adequate for forest regeneration, ignoring climate requirements for seedling recruitment, a potential demographic bottleneck. Moreover, local genetic adaptation is expected to facilitate range expansion, with tree populations at the upper forest edge providing the seed best adapted to the alpine. Here, we test these expectations using a novel combination of common gardens, seeded with two widely distributed subalpine conifers, and climate manipulations replicated at three elevations. Infrared heaters raised temperatures in heated plots, butmore » raised temperatures more in the forest than at or above treeline because strong winds at high elevation reduced heating efficiency. Watering increased season-average soil moisture similarly across sites. Contrary to expectations, warming reduced Engelmann spruce recruitment at and above treeline, as well as in the forest. Warming reduced limber pine first-year recruitment in the forest, but had no net effect on fourth-year recruitment at any site. Watering during the snow-free season alleviated some negative effects of warming, indicating that warming exacerbated water limitations. Contrary to expectations of local adaptation, low-elevation seeds of both species initially recruited more strongly than high-elevation seeds across the elevation gradient, although the low-provenance advantage diminished by the fourth year for Engelmann spruce, likely due to small sample sizes. High- and low-elevation provenances responded similarly to warming across sites for Engelmann spruce, but differently for limber pine. In the context of increasing tree mortality, lower recruitment at all elevations with warming, combined with lower quality, high-provenance seed being most available for colonizing the alpine, portends range contraction for Engelmann spruce. The lower sensitivity of limber pine to warming indicates a potential for this species to become more important in subalpine forest communities in the coming centuries.« less

Reliability of kinetic visual field testing in children with mutation-proven retinal dystrophies: Implications for therapeutic clinical trials.

PubMed

Dedania, Vaidehi S; Liu, Jerry Y; Schlegel, Dana; Andrews, Chris A; Branham, Kari; Khan, Naheed W; Musch, David C; Heckenlively, John R; Jayasundera, K Thiran

2018-01-01

Kinetic visual field testing is used to monitor disease course in retinal dystrophy clinical care and treatment response in treatment trials, which are increasingly recruiting children. This study investigates Goldmann visual field (GVF) changes in young children with mutation-proven retinal dystrophies as they age and with progression of the retinal degeneration. Retrospective review of children ≤ 17 years old with a mutation-proven retinal dystrophy. Objective clinical disease activity was assessed by a retinal degeneration specialist masked to GVF results. Digital quantification of GVF area was performed. Twenty-nine children (58 eyes), ages 5-16, were identified. GVF area increased with age despite progression in 20 children and clinical stability in nine children. Mean ± standard error increase in GVF area/year was 333 ± 130 mm 2 (I4e, p = 0.012), 720 ± 155 mm 2 (III4e, p < 0.001), and 759 ± 167 mm 2 (IV4e, p < 0.001), with greater increases at earlier ages. Repeatability coefficients were 7381 mm 2 (I4e), 9379 mm 2 (III4e), and 10346 mm 2 (IV4e), indicating a large variability. At 2.5 years after the baseline GVF the area increased ≥ 20%, the criterion for positive treatment outcome defined in recent published therapeutic trials, in 38% (I4e), 34% (III4e), and 33% (IV4e) of eyes. In a substantial proportion of children with mutation-proven retinal dystrophies, there is a significant increase in GVF area with age, particularly those < 12 years, despite progression or stability of disease. These findings suggest that change in GVF area in children with retinal dystrophies can be an unreliable measure of response to treatment and on which to base appropriate counseling about visual impairment.

Provenance of sediments from Sumatra, Indonesia - Insights from detrital U-Pb zircon geochronology, heavy mineral analyses and Raman spectroscopy

NASA Astrophysics Data System (ADS)

Liebermann, C.; Hall, R.; Gough, A.

2017-12-01

The island of Sumatra is situated at the southwestern margin of the Indonesian archipelago. Although it is the sixth largest island in the world, the geology of the Sumatra sedimentary basins and their underlying basement is relatively poorly understood in terms of their provenance. This work is a multi-proxy provenance study utilizing U-Pb detrital zircon dating by LA-ICP-MS combined with optical and Raman spectroscopy-based heavy mineral analysis. It will help to unravel the stratigraphy of Sumatra, contribute to paleogeographic reconstruction of western SE Asia, and aid a wider understanding of Sumatran petroleum plays. Thin section analyses, heavy mineral assemblages, and >3500 concordant U-Pb zircon ages, from samples acquired during two fieldwork seasons indicate a mixed provenance for Cenozoic sedimentary formations, including both local igneous sources and mature basement rocks. Characteristic Precambrian zircon age spectra are found in all analysed Cenozoic sedimentary strata. These can be correlated with zircon age populations found in Sumatran basement rocks; Neoproterozoic and Mesoproterozoic age groups are dominant (c. 500-600 Ma, c. 850-1000 Ma, c. 1050-1200 Ma). Paleoproterozoic to Archaean zircons occur as minor populations. The Phanerozoic age spectra of the Cenozoic formations are characterised by distinct Carboniferous, Permo-Triassic, and Jurassic-Cretaceous zircon populations. Permo-Triassic zircons are interpreted to come from granitoids in the Malay peninsula or Sumatra itself. Eocene to Lower Miocene strata are characterised by ultrastable heavy minerals such as zircon, tourmaline, and rutile, which together with garnet, suggest the principal sources were igneous and metamorphic basement rocks. Cenozoic zircons appear only from the Middle Miocene onwards. This change is interpreted to indicate a new contribution from a local volcanic arc, and is supported by the occurrence of unstable heavy minerals such as apatite and clinopyroxene, and the presence of volcanic quartz. The absence of an earlier volcanic contribution is surprising since subduction is widely considered to have been active from the Eocene.

Warming and provenance limit tree recruitment across and beyond the elevation range of subalpine forest

DOE PAGES

Kueppers, Lara M.; Conlisk, Erin; Castanha, Cristina; ...

2016-12-15

Climate niche models project that subalpine forest ranges will extend upslope with climate warming. These projections assume that the climate suitable for adult trees will be adequate for forest regeneration, ignoring climate requirements for seedling recruitment, a potential demographic bottleneck. Moreover, local genetic adaptation is expected to facilitate range expansion, with tree populations at the upper forest edge providing the seed best adapted to the alpine. Here, we test these expectations using a novel combination of common gardens, seeded with two widely distributed subalpine conifers, and climate manipulations replicated at three elevations. Infrared heaters raised temperatures in heated plots, butmore » raised temperatures more in the forest than at or above treeline because strong winds at high elevation reduced heating efficiency. Watering increased season-average soil moisture similarly across sites. Contrary to expectations, warming reduced Engelmann spruce recruitment at and above treeline, as well as in the forest. Warming reduced limber pine first-year recruitment in the forest, but had no net effect on fourth-year recruitment at any site. Watering during the snow-free season alleviated some negative effects of warming, indicating that warming exacerbated water limitations. Contrary to expectations of local adaptation, low-elevation seeds of both species initially recruited more strongly than high-elevation seeds across the elevation gradient, although the low-provenance advantage diminished by the fourth year for Engelmann spruce, likely due to small sample sizes. High- and low-elevation provenances responded similarly to warming across sites for Engelmann spruce, but differently for limber pine. In the context of increasing tree mortality, lower recruitment at all elevations with warming, combined with lower quality, high-provenance seed being most available for colonizing the alpine, portends range contraction for Engelmann spruce. The lower sensitivity of limber pine to warming indicates a potential for this species to become more important in subalpine forest communities in the coming centuries.« less

The Comparison of Detrital Zircon Ages to Point Count Provenance Analysis for the Pottsville Sandstone in the Northern Appalachian Foreland Basin Venango County, Pennsylvania

NASA Astrophysics Data System (ADS)

Loveday, S.; Harris, D. B.; Schiappa, T.; Pecha, M.

2017-12-01

The specific sources of sediments deposited in the Appalachian basin prior to and immediately following the Alleghenian orogeny has long been a topic of debate. Recent advances in U-Pb dating of detrital zircons have greatly helped to determine some of the sources of these sediments. For this study, sandstone samples were collected from the Pottsville Formation in the northern Appalachian Foreland Basin, Venango County, Pennsylvania to provide supplementary data for previous work that sought to describe the provenance of the same sediments by point counts of thin sections of the same units. Results of this previous work established that the provenance for these units was transitional recycled orogenic, including multiple recycled sediments, and that a cratonic contribution was not able to be determined clearly. The previous results suggested that the paleoenvironment was a fluvial dominated delta prograding in the northern direction. However, no geochronologic data was found during this study to confirm this interpretation. We sought to verify these results by U-Pb analysis of detrital zircons. Samples were collected from the areas where the previous research took place. U-Pb ages were found from sample at the highest elevation and lowest elevation. In the first sample, sample 17SL01 (younger sample stratigraphically), the zircons yield U-Pb age range peaks at 442-468 ma and 1037-1081 ma. The probability density plot for this specific sample displays a complete age gap from 500 ma to 811 ma. In the second sample, sample 17SL03 (older rock stratigraphically), the zircons yield U-Pb ages range peaks of 424-616 ma and 975-1057 ma. This sample doesn't show any ages younger than 424 ma and it doesn't display the sample age gap as sample 17SL01 does. The ages of zircons are consistent with thin section point counting provenance results from previous research suggesting zircon transport from the northern direction.

Provenance history of detrital diamond deposits, West Coast of Namaqualand, South Africa

NASA Astrophysics Data System (ADS)

Phillips, David; Harris, Jeffrey W.; de Wit, Michiel C. J.; Matchan, Erin L.

2018-05-01

The West Coast of Namaqualand in South Africa hosts extensive detrital diamond deposits, but considerable debate exists as to the provenance of these diamonds. Some researchers have suggested derivation of the diamonds from Cretaceous-Jurassic kimberlites (also termed Group I kimberlites) and orangeites (also termed Group II kimberlites) located on the Kaapvaal Craton. However, others favour erosion of diamonds from the ca.300 Ma Dwyka Group sediments, with older, pre-Karoo kimberlites being the original source(s). Previous work has demonstrated that 40Ar/39Ar analyses of clinopyroxene inclusions, extracted from diamonds, yield ages approaching the time(s) of source kimberlite emplacement, which can be used to constrain the provenance of placer diamond deposits. In the current study, 40Ar/39Ar analyses were conducted on clinopyroxene inclusions from two similar batches of Namaqualand detrital diamonds, yielding (maximum) ages ranging from 117.5 ± 43.6 Ma to 3684 ± 191 Ma (2σ) and 120.6 ± 15.4 Ma to 688.8 ± 4.9 Ma (2σ), respectively. The vast majority of inclusions (88%) produced ages younger than 500 Ma, indicating that most Namaqualand diamonds originated from Cretaceous-Jurassic kimberlites/orangeites, with few, if any, derived from the Dwyka tillites. The provenance of the Namaqualand diamonds from ca.115-200 Ma orangeites is consistent with Late Cretaceous paleo-drainage reconstructions, as these localities could have been sampled by the `paleo-Karoo' River and transported to the West Coast via an outlet close to the current Olifants River mouth. At ca.90 Ma, this drainage system appears to have been captured by the `paleo-Kalahari' River, a precursor to the modern Orange River system. This latter drainage is considered to have transported diamonds eroded from both ca.80-90 Ma kimberlites and ca.115-200 Ma orangeites to the West Coast, which were subsequently reworked along the Namibian coast, forming additional placer deposits.

A systematic review: can one prescribe carbapenems to patients with IgE-mediated allergy to penicillins or cephalosporins?

PubMed

Kula, Brittany; Djordjevic, Gordana; Robinson, Joan L

2014-10-15

Cross-reactivity between penicillins or cephalosporins and carbapenems is anticipated as all have a beta lactam ring. However, the true incidence of immunoglobulin (Ig)E-mediated cross-reactivity is not known. A systematic review was conducted to collect and combine all published data on children and adults reported to have a clinical history of IgE-mediated hypersensitivity to a penicillin and/or cephalosporin who were subsequently given a carbapenem. Reactions were classified as proven, suspected, or possible IgE-mediated and non-IgE-mediated. Ten studies and 12 case reports describing 854 participants fit the study criteria. For patients with previous proven, suspected, or possible IgE-mediated penicillin reactions (N = 838), the incidence of any type of suspected hypersensitivity reaction to a carbapenem was 36/838 (4.3%; 95% confidence interval [CI], 3.1%-5.9%) and the incidence of proven (1/838), suspected (0/838), or possible (19/838) IgE-mediated reactions was 20/838 (2.4%; 95% CI, 1.6%-3.7%). Of the subset of patients with positive penicillin skin tests (n = 295), only 1 had a hypersensitivity reaction (0.3%; 95% CI, .06%-1.9%), and this was a possible IgE-mediated reaction. For patients with previous proven, suspected, or possible IgE-mediated cephalosporin reactions (N = 12), the incidence of any type of hypersensitivity reaction to a carbapenem was 3/12 (25%); this included 2 non-IgE-mediated reactions and 1 possible IgE-mediated reaction. The cross-reactivity between penicillins and carbapenems for IgE-mediated reactions is very low, but caution is still advised. Cross-reactivity rates may be higher between cephalosporins and carbapenems; however, minimal data are available. © The Author 2014. Published by Oxford University Press on behalf of the Infectious Diseases Society of America. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Management of recurrent vulvo-vaginal candidosis as a chronic illness.

PubMed

Donders, Gilbert G G; Bellen, Gert; Mendling, Werner

2010-01-01

For sporadic acute Candida vaginitis, any oral or local antifungal therapy can be used. For women with recurrent vulvo-vaginal candidosis (RVC), on the other hand, such simple approaches are insufficient, regardless of the product chosen. Instead, RVC should be managed as any other chronic disease and requires long-term, prophylactic, suppressive antifungal treatment. A regimen using individualized, decreasing doses of oral fluconazole (the ReCiDiF regimen) was proven to be highly efficient and offered great comfort to the patients. During this regimen, it is crucial that patients are carefully examined by anamnestic, clinical, microscopic and culture-proven absence of Candida. If a relapse occurs, the medication is adjusted and efforts are taken to find a possible triggering factor for the reactivation of the infection. Care has to be taken not to accumulate 'don't do's', unless the efficiency of a measure has been proven, by trying to eliminate one risk factor at a time for 2 months. Known possible triggers to be kept in mind are (1) antibiotic use, (2) use of specific contraceptives, especially combined contraceptive pills, (3) disturbed glucose metabolism, (4) the use of personal hygienic products, and (5) tight clothing or plastic panty liners. In therapy-resistant cases, non-albicans infection must be ruled out, and alternative therapies should be tried. Boric acid is proven to be efficient in most of these resistant cases, but other non-azoles like amphotericin B, flucytosine, gentian violet, and even caspofungin may have to be tried. As a final remark it has to be said that many patients feel poorly understood and inefficiently managed by many care-givers, increasing their feelings of guilt and sexual inferiority. Therefore, attention has to be given to take the disease seriously, follow strict treatment regimens, and advise precisely and based on individual evidence concerning any possible risk factors for recurrence. In case of therapy-resistant vulvo-vaginitis, reconsider your diagnosis and/or consider referral to specialized therapists. Copyright © 2010 S. Karger AG, Basel.

Chronic bacterial osteomyelitis: prospective comparison of (18)F-FDG imaging with a dual-head coincidence camera and (111)In-labelled autologous leucocyte scintigraphy.

PubMed

Meller, J; Köster, G; Liersch, T; Siefker, U; Lehmann, K; Meyer, I; Schreiber, K; Altenvoerde, G; Becker, W

2002-01-01

Indium-111-labelled white blood cells ((111)In-WBCs) are currently considered the tracer of choice in the diagnostic work-up of suspected active chronic osteomyelitis (COM). Previous studies in a limited number of patients, performed with dedicated PET systems, have shown that [(18)F]2'-deoxy-2-fluoro- D-glucose (FDG) imaging may offer at least similar diagnostic accuracy. The aim of this prospective study was to compare FDG imaging with a dual-head coincidence camera (DHCC) and (111)In-WBC imaging in patients with suspected COM. Thirty consecutive non-diabetic patients with possible COM underwent combined skeletal scintigraphy (30/30 patients), (111)In-WBC imaging (28/30 patients) and FDG-PET with a DHCC (30/30 patients). During diagnostic work-up, COM was proven in 11/36 regions of suspected skeletal infection and subsequently excluded in 25/36 regions. In addition, soft tissue infection was present in five patients and septic arthritis in three. (111)In-WBC imaging in 28 patients was true positive in 2/11 regions with proven COM and true negative in 21/23 regions without further evidence of COM. False-positive results occurred in two regions and false-negative results in nine regions suspected for COM. Most of the false-negative results (7/9) occurred in the central skeleton. If the analysis was restricted to the 18 regions with available histology ( n=17) or culture ( n=1), (111)In-WBC imaging was true positive in 2/18 regions, true negative in 8/18 regions, false negative in 7/18 regions and false positive in 1/18 regions. FDG-DHCC imaging was true positive in 11/11 regions with proven COM and true negative in 23/25 regions without further evidence of COM. False-positive results occurred in two regions. If the analysis was restricted to the 19 regions with available histology ( n=18) or culture ( n=1), FDG-DHCC imaging was true positive in 9/9 regions with proven COM and true negative in 10/10 regions without further evidence of COM. It is concluded that FDG-DHCC imaging is superior to (111)In-WBC scintigraphy in the diagnosis of COM in the central skeleton and therefore should be considered the method of choice for this indication. This seems to hold true for peripheral lesions as well, but in our series the number of cases with proven infection was too small to permit a final conclusion.

Unraveling multiple provenance areas using sandstone petrofacies and geochemistry: An example in the southern flank of the Golfo San Jorge Basin (Patagonia, Argentina)

NASA Astrophysics Data System (ADS)

Limarino, Carlos Oscar; Giordano, Sergio Roberto

2016-03-01

The aim of this paper is to study the provenance of Late Cretaceous sandstones deposited along the south flank of the Golfo San Jorge Basin. For this purpose, detrital modes of three hundred thirty-seven sandstone samples collected in the Mina del Carmen, Bajo Barreal, and Cañadón Seco Formations were studied in ten oil fields. According to the modal composition of the sandstones, six petrofacies were defined allowing the identification of not only principal, but also secondary provenance areas. The QVM and VQM petrofacies are more than 20% metamorphic, sedimentary, and polycrystalline quartz clasts (Lm + Ls + Qpg > 20%), evidencing a secondary signal of basement supply masked by a predominant volcanic provenance. The petrofacies VP and VF are characterized by Lm + Ls + Qpg <20% and more than 20% total feldspar (Pm + Om >20%.), which indicate a supply of sediment from volcanic terrains and scarce derivation of materials from basement rocks. Based on the plagioclase/k-feldspar ratio, the VF petrofacies is interpreted to be dominated by the supply of sand grains from the Andean volcanic-arc, while VP is supposed have originated through the erosion of intermediate volcanic rock outcroppings in the Macizo del Deseado. Finally, both the VQ and QV petrofacies show Lm + Ls + Qpg <20% and Pm + Om<20%, indicating a provenance of volcanic areas coupled with minor contributions from basement rocks. During the Late Cretaceous, the Golfo San Jorge Basin underwent a sag phase that was characterized by very scarce volcanism and tectonic activity. Although these conditions did not favor defined patterns in the vertical stacking of petrofacies, the sandstones exhibit remarkable changes in their regional distribution, which were determined by the paleogeography of the basin and differences in basement composition within the source areas. Finally, a paleogeographic model for sediment circulation in the basin is proposed. This model recognizes the main fluvial dispersal trends that flowed northwest to southeast and transported large amounts of volcanic clasts (associated with petrofacies VF-VQ). To the extent that rivers flowed eastward, a secondary supply from the Precambrian basement, which were composed of low-to high-grade metamorphic rocks, was also important (petrofacies association VQM and QVM). The southwestern area of the basin is dominated by VP petrofacies that record the supply of plagioclase-rich volcanic clasts. This petrofacies likely corresponds to the erosion of Jurassic volcanic units that crop out in the Macizo del Deseado.

Associating uncertainty with datasets using Linked Data and allowing propagation via provenance chains

NASA Astrophysics Data System (ADS)

Car, Nicholas; Cox, Simon; Fitch, Peter

2015-04-01

With earth-science datasets increasingly being published to enable re-use in projects disassociated from the original data acquisition or generation, there is an urgent need for associated metadata to be connected, in order to guide their application. In particular, provenance traces should support the evaluation of data quality and reliability. However, while standards for describing provenance are emerging (e.g. PROV-O), these do not include the necessary statistical descriptors and confidence assessments. UncertML has a mature conceptual model that may be used to record uncertainty metadata. However, by itself UncertML does not support the representation of uncertainty of multi-part datasets, and provides no direct way of associating the uncertainty information - metadata in relation to a dataset - with dataset objects.We present a method to address both these issues by combining UncertML with PROV-O, and delivering resulting uncertainty-enriched provenance traces through the Linked Data API. UncertProv extends the PROV-O provenance ontology with an RDF formulation of the UncertML conceptual model elements, adds further elements to support uncertainty representation without a conceptual model and the integration of UncertML through links to documents. The Linked ID API provides a systematic way of navigating from dataset objects to their UncertProv metadata and back again. The Linked Data API's 'views' capability enables access to UncertML and non-UncertML uncertainty metadata representations for a dataset. With this approach, it is possible to access and navigate the uncertainty metadata associated with a published dataset using standard semantic web tools, such as SPARQL queries. Where the uncertainty data follows the UncertML model it can be automatically interpreted and may also support automatic uncertainty propagation . Repositories wishing to enable uncertainty propagation for all datasets must ensure that all elements that are associated with uncertainty (PROV-O Entity and Activity classes) have UncertML elements recorded. This methodology is intentionally flexible to allow uncertainty metadata in many forms, not limited to UncertML. While the more formal representation of uncertainty metadata is desirable (using UncertProv elements to implement the UncertML conceptual model ), this will not always be possible, and any uncertainty data stored will be better than none. Since the UncertProv ontology contains a superset of UncertML elements to facilitate the representation of non-UncertML uncertainty data, it could easily be extended to include other formal uncertainty conceptual models thus allowing non-UncertML propagation calculations.

Provenance of the lower Miocene of the Gulf of Mexico from detrital zircon double dating

NASA Astrophysics Data System (ADS)

xu, J.

2013-12-01

The lower Miocene interval of the Gulf of Mexico (GOM) has recently gained increasing attention from oil and gas industry due to its hydrocarbon potential below the salt canopy. However, it has been less well studied than both the underlying Oligocene and overlying middle Miocene strata. The lower Miocene worldwide is a transitional period of tectonic, climatic, and oceanographic change. In particular, it is a period of major tectonic reorganization in the western interior of North America (Rocky Mountains), involving a shift from the Oligocene thermal phase, with abundant volcanic activity recorded in the thick Frio/Vicksburg succession of the GOM, to the Miocene Basin-Range extensional phase. Climatic conditions also changed from a relatively arid Oligocene to wetter Miocene, resulting in increased sediment yields from exhumed tectonic structures. Previous provenance studies used proportions of quartz, feldspar and lithic fragments and consideration of likely river courses through known paleogeomorphological elements. Only limited detrital zircon (DZ) U-Pb studies on Paleocene strata have been undertaken and there has been no previous U-Pb and (U-Th)/He double dating in the GOM. In this study we apply the latest analytical approaches, such as DZ U-Pb dating to gain robust source terranes ages and more fully elucidate the complex sediment provenance and dispersal history of GOM. We also employ DZ (U-Th)/He (ZHe) dating, combined with DZ U-Pb, to not only define sedimentary provenance but also the exhumation histories of detrital source regions. Samples of lower Miocene outcrop exposures in Texas and Louisiana have been collected to discriminate the varied tectonic and drainage system changes across the basin in lateral. In addition, samples from the Eocene, Oligocene and middle Miocene have been obtained to reveal vertical shift of source terranes contributions. Our initial age data show detrital zircons of lower Miocene sediments come from a wide range of source terranes including a large populations from the western interior of North America (Rocky Mountains), Grenville, Mid-Continent, and Yavapai-Mazatzal provinces, with smaller populations from the Appalachian-Ouachita, Wyoming or Superior regions. Based on U-Pb dating results, we will carry out (U-Th)/He dating on selected zircons to reveal the detailed exhumation histories of the sediment source regions. Using the dual criteria of DZ crystallization age (U-Pb) and cooling age (U-Th/He) to constrain provenance will enable us to generate rigorous reconstructions of the lower Miocene depositional systems from source terrane to deep-water sink for this key transitional period in geologic history.

Petrography and geochemistry of modern river sediments in an equatorial environment (Rwenzori Mountains and Albertine rift, Uganda) - Implications for weathering and provenance

NASA Astrophysics Data System (ADS)

Schneider, Sandra; Hornung, Jens; Hinderer, Matthias; Garzanti, Eduardo

2016-05-01

In hot-humid equatorial climate chemical weathering may be so strong that provenance signatures may be largely lost and even detritus derived from crystalline basement rocks reduced to quartzose sand. We tested this hypothesis in western Uganda, where stable plateau areas contrast with the active tectonic setting of the Albertine Rift (western branch of the East African Rift System, EARS), culminating in the strongly exhumed fault block of the > 5000 m high Rwenzori Mountains. In this setting, sediments derived from similar types of basement rocks including gneiss, schist, amphibolite, metasediments and granites can be traced from rapidly eroding high-altitude areas to low-altitude areas undergoing prolonged weathering. Sand and mud carried by 51 rivers overall in these two contrasting landscapes were sampled to study how and to what extent detrital modes are modified by the selective loss of unstable detrital minerals. Sediments generated in the high-relief Rwenzori Mountains show abundant feldspar (up to 32%) and rock fragments (up to 52%), which together with low SiO2/Al2O3 ratio and composition close to the Upper Continental Crust (UCC standard) reflect erosion in weathering-limited conditions. In the central Rwenzoris, low Th/Sc and Zr/Sc ratios, weak negative Eu anomaly, lower LaN/YbN values, and heavy-mineral assemblages with hornblende and epidote reflect the lithology of source rocks in the Buganda-Toro-Greenstone Belt. In contrast, sediments produced on the low-relief plateau have quartz content up to 98% and higher SiO2/Al2O3 ratio. Systematic loss of mobile elements is indicated by high chemical weathering indices CIA, PIA and WIP. However, provenance from metamorphic basement rocks is still indicated by heavy-mineral assemblages dominated by epidote and amphibole, whereas provenance from granitic rocks is revealed by high Th/Sc and Zr/Sc ratio, negative Eu anomaly and higher LaN/YbN values. We conclude that first-cycle sediments generated in high-relief areas preserve the original imprint of parent lithologies even in very humid equatorial climate. In low-relief areas, although weathering processes have proceeded over millions of years turning basement-derived detritus into an almost pure quartzose resistate, provenance signals are not erased entirely, and can be still retrieved from the residual heavy-mineral suite and relative abundance of high-field-strength trace elements.

Efficacy and safety of micafungin for the treatment of patients with proven or probable invasive aspergillosis: A non-comparative, multicenter, phase IV, open-label study.

PubMed

Ji, Yu; Song, Yongping; Zhou, Fang; Liu, Ting; Jiang, Ming; Zhao, Xielan; Huang, Xiaojun

2017-12-01

Few studies have assessed the efficacy and safety of micafungin in patients with proven or probable invasive aspergillosis (IA). This was the aim of the current study, which was conducted in 22 hospitals in China, where micafungin was approved for treatment of IA in 2006. This was a non-comparative, phase IV open-label study (NCT02646774). Eligible patient were adults with proven or probable IA. Efficacy endpoints included rates of overall treatment success (primary endpoint) and clinical improvement, fungal clearance, mortality, and the site of Aspergillus infection (all secondary endpoints). Safety endpoints included incidences of treatment-emergent adverse events (TEAEs), serious AEs (SAEs), and adverse drug reactions (ADRs). These endpoints were reported descriptively with associated 95% confidence intervals (CI); no hypotheses were tested. The study was discontinued early due to low patient recruitment, which did not allow for the planned sample size to be reached. In total, 68 patients were enrolled: 42 into the full analysis set (for efficacy) and 61 into the safety analysis set. All patients were Han Chinese; the majority were male (n = 26; 61.9%) and ≤60 years of age (n = 35; 83.3%). Rates of overall treatment success, clinical improvement, fungal clearance, and mortality were 45.2% (n = 19/42; 95% CI: 29.85-61.33); 59.5% (n = 25/42; 95% CI: 43.28-74.37), 80.0% (n = 4/5; 95% CI: 28.36-99.49), and 7.1% (n = 3/42; 95% CI: 1.50-19.48), respectively. All patients were diagnosed with pulmonary Aspergillus infection. Overall, 155 TEAEs and 8 SAEs were reported by 37 (60.7%) and 7 (11.5%) patients. The most common TEAEs were decreased platelet count and fatigue (both n = 5; 8.2%) and the most common SAEs were intracranial hemorrhage and lung infection (n = 3; 4.9% and n = 2; 3.3%). Eight ADRs (n = 6; 9.8%) were reported but all were completely remitted or remitting during follow-up. Results suggest that micafungin is efficacious and well-tolerated in patients with proven or probable IA in China. However, these findings should be interpreted with care, due to the small number of patients included in this study. Further comparative trials should be used to confirm the efficacy and safety of micafungin in patients with proven or probable IA. Copyright © 2017 The Authors. Published by Wolters Kluwer Health, Inc. All rights reserved.

Reliability and longitudinal change of detrital-zircon age spectra in the Snake River system, Idaho and Wyoming: An example of reproducing the bumpy barcode

NASA Astrophysics Data System (ADS)

Link, Paul Karl; Fanning, C. Mark; Beranek, Luke P.

2005-12-01

Detrital-zircon age-spectra effectively define provenance in Holocene and Neogene fluvial sands from the Snake River system of the northern Rockies, U.S.A. SHRIMP U-Pb dates have been measured for forty-six samples (about 2700 zircon grains) of fluvial and aeolian sediment. The detrital-zircon age distributions are repeatable and demonstrate predictable longitudinal variation. By lumping multiple samples to attain populations of several hundred grains, we recognize distinctive, provenance-defining zircon-age distributions or "barcodes," for fluvial sedimentary systems of several scales, within the upper and middle Snake River system. Our detrital-zircon studies effectively define the geochronology of the northern Rocky Mountains. The composite detrital-zircon grain distribution of the middle Snake River consists of major populations of Neogene, Eocene, and Cretaceous magmatic grains plus intermediate and small grain populations of multiply recycled Grenville (˜950 to 1300 Ma) grains and Yavapai-Mazatzal province grains (˜1600 to 1800 Ma) recycled through the upper Belt Supergroup and Cretaceous sandstones. A wide range of older Paleoproterozoic and Archean grains are also present. The best-case scenario for using detrital-zircon populations to isolate provenance is when there is a point-source pluton with known age, that is only found in one location or drainage. We find three such zircon age-populations in fluvial sediments downstream from the point-source plutons: Ordovician in the southern Beaverhead Mountains, Jurassic in northern Nevada, and Oligocene in the Albion Mountains core complex of southern Idaho. Large detrital-zircon age-populations derived from regionally well-defined, magmatic or recycled sedimentary, sources also serve to delimit the provenance of Neogene fluvial systems. In the Snake River system, defining populations include those derived from Cretaceous Atlanta lobe of the Idaho batholith (80 to 100 Ma), Eocene Challis Volcanic Group and associated plutons (˜45 to 52 Ma), and Neogene rhyolitic Yellowstone-Snake River Plain volcanics (˜0 to 17 Ma). For first-order drainage basins containing these zircon-rich source terranes, or containing a point-source pluton, a 60-grain random sample is sufficient to define the dominant provenance. The most difficult age-distributions to analyze are those that contain multiple small zircon age-populations and no defining large populations. Examples of these include streams draining the Proterozoic and Paleozoic Cordilleran miogeocline in eastern Idaho and Pleistocene loess on the Snake River Plain. For such systems, large sample bases of hundreds of grains, plus the use of statistical methods, may be necessary to distinguish detrital-zircon age-spectra.

Primary and secondary arterial fistulas during chronic Q fever.

PubMed

Karhof, Steffi; van Roeden, Sonja E; Oosterheert, Jan J; Bleeker-Rovers, Chantal P; Renders, Nicole H M; de Borst, Gert J; Kampschreur, Linda M; Hoepelman, Andy I M; Koning, Olivier H J; Wever, Peter C

2018-04-20

After primary infection with Coxiella burnetii, patients may develop acute Q fever, which is a relatively mild disease. A small proportion of patients (1%-5%) develop chronic Q fever, which is accompanied by high mortality and can be manifested as infected arterial or aortic aneurysms or infected vascular prostheses. The disease can be complicated by arterial fistulas, which are often fatal if they are left untreated. We aimed to assess the cumulative incidence of arterial fistulas and mortality in patients with proven chronic Q fever. In a retrospective, observational study, the cumulative incidence of arterial fistulas (aortoenteric, aortobronchial, aortovenous, or arteriocutaneous) in patients with proven chronic Q fever (according to the Dutch Chronic Q Fever Consensus Group criteria) was assessed. Proven chronic Q fever with a vascular focus of infection was defined as a confirmed mycotic aneurysm or infected prosthesis on imaging studies or positive result of serum polymerase chain reaction for C. burnetii in the presence of an arterial aneurysm or vascular prosthesis. Of 253 patients with proven chronic Q fever, 169 patients (67%) were diagnosed with a vascular focus of infection (42 of whom had a combined vascular focus and endocarditis). In total, 26 arterial fistulas were diagnosed in 25 patients (15% of patients with a vascular focus): aortoenteric (15), aortobronchial (2), aortocaval (4), and arteriocutaneous (5) fistulas (1 patient presented with both an aortocaval and an arteriocutaneous fistula). Chronic Q fever-related mortality was 60% for patients with and 21% for patients without arterial fistula (P < .0001). Primary fistulas accounted for 42% and secondary fistulas for 58%. Of patients who underwent surgical intervention for chronic Q fever-related fistula (n = 17), nine died of chronic Q fever-related causes (53%). Of patients who did not undergo any surgical intervention (n = 8), six died of chronic Q fever-related causes (75%). The proportion of patients with proven chronic Q fever developing primary or secondary arterial fistulas is high; 15% of patients with a vascular focus of infection develop an arterial fistula. This observation suggests that C. burnetii, the causative agent of Q fever, plays a role in the development of fistulas in these patients. Chronic Q fever-related mortality in patients with arterial fistula is very high, in both patients who undergo surgical intervention and patients who do not. Copyright © 2018 Society for Vascular Surgery. Published by Elsevier Inc. All rights reserved.

Provenance of sediments from Sumatra, Indonesia

NASA Astrophysics Data System (ADS)

Liebermann, Christof; Hall, Robert; Gough, Amy

2017-04-01

The island of Sumatra is situated at the south-western margin of the Indonesian archipelago. Sumatra is affected by active continental margin volcanism along the Sunda Trench, west of Sumatra as a result of active northeast subduction of the Indian plate under the Eurasian plate. Exposures of the Palaeozoic meta-sedimentary basement are mainly limited in extent to the northeast-southwest trending Barisan Mountain chain. The younger Cenozoic rocks are widespread across Sumatra, but can be grouped into structurally subdivided 'fore-arc', 'intramontane', and 'back-arc' basins. However, the formation of the basins pre-dates the current magmatic arc, thus a classical arc-related generation model can not be applied. The Cenozoic formations are well studied due to hydrocarbon enrichment, but little is known about their provenance history. A comprehensive sedimentary provenance study of the Cenozoic formations can aid in the wider understanding of Sumatran petroleum plays, can contribute to palaeographic reconstruction of western SE Asia, and might help to simplify the overall stratigraphy of Sumatra. This work represents a multi-proxy provenance study of sedimentary rocks from the main Cenozoic basins of Sumatra, alongside sediment from present-day river systems. The project refines the provenance in two ways: first, by studying the heavy mineral assemblages of the targeted formations, and secondly, by U-Pb detrital zircon dating using LA-ICP-MS to identify the age-range of the potential sediment sources. Preliminary U-Pb zircon age-data of >1500 concordant grains (10% discordant cut-off), heavy mineral compositions, and thin section analysis from two fieldwork seasons indicate a mixed provenance model, with a proximal igneous source, and mature basement rocks. An increase of the proximal signature in Lower-Miocene strata indicated by the occurrence of unstable heavy mineral phases such as apatite, and clinopyroxene suggests a major change of the source at the Oligocene-Miocene boundary. This can be interpreted as a pulse in the uplift of the Barisan Mountains. The presence of volcanic quartz in thin section supports this hypothesis. On the contrary, older sedimentary strata are characterised by ultra-stable heavy minerals such as zircon, tourmaline, and rutile; the presence of garnet in both pre-, and post-uplift affected strata indicates a contribution from metamorphic basement rocks, either from the local Sumatran basement or the Malay-Peninsula. Detrital zircon ages as old as Archean are present in all sedimentary formations; a prominent Triassic age group can be correlated with the Main Range Province granitoids reported from the Malay-Peninsula. It is noteworthy that zircon age spectra from Sumatra lack some diagnostic age groups commonly found in central- and western SE Asia, such as Cretaceous ages, correlated with igneous rock in the Schwaner Mountains, SW Borneo. The analysis of modern river sands suggests that the current sedimentary fluvial systems are mainly sourced from the recent Barisan-related volcanic arc. Zircon age patterns of the modern river sands resemble the populations found in the sedimentary strata, whereas, the heavy mineral composition is highly diluted by the recent igneous sources.

Axial Belt Provenance: modern river sands from the core of collision orogens

NASA Astrophysics Data System (ADS)

Resentini, A.; Vezzoli, G.; Paparella, P.; Padoan, M.; Andò, S.; Malusà, M.; Garzanti, E.

2009-04-01

Collision orogens have a complex structure, including diverse rock units assembled in various ways by geodynamic processes. Consequently, orogenic detritus embraces a varied range of signatures, and unravelling provenance of clastic wedges accumulated in adjacent foreland basins, foredeeps, or remnant-ocean basins is an arduous task. Dickinson and Suczek (1979) and Dickinson (1985) recognized the intrinsically composite nature of orogenic detritus, but did not attempt to establish clear conceptual and operational distinctions within their broad "Recycled Orogenic Provenance". In the Alpine and Himalayan belts, the bulk of the detritus is produced by focused erosion of the central backbone of the orogen, characterized by high topography and exhumation rates (Garzanti et al., 2004; Najman, 2006). Detritus derived from such axial nappe pile, including slivers of thinned continental-margin lithosphere metamorphosed at depth during early collisional stages, has diagnostic general features, which allows us to define an "Axial Belt Provenance" (Garzanti et al., 2007). In detail, "Axial Belt" detrital signatures are influenced by metamorphic grade of source rocks and relative abundance of continental versus oceanic protoliths, typifying distinct subprovenances. Metasedimentary cover nappes shed lithic to quartzolithic detritus, including metapelite, metapsammite, and metacarbonate grains of various ranks; only amphibolite-facies metasediments supply abundant heavy minerals (e.g., almandine garnet, staurolite, kyanite, sillimanite, diopsidic clinopyroxene). Continental-basement nappes shed hornblende-rich quartzofeldspathic detritus. Largely retrogressed blueschist to eclogite-facies metaophiolites supply albite, metabasite and foliated antigorite-serpentinite grains, along with abundant heavy minerals (epidote, zoisite, clinozoisite, lawsonite, actinolitic to barroisitic amphiboles, glaucophane, omphacitic clinopyroxene). Increasing metamorphic grade and deeper tectonostratigraphic level of source rocks are reflected by: a) increasing rank of metamorphic rock fragments (as indicated by progressive development of schistosity and growth of micas and other index minerals; MI index of Garzanti and Vezzoli, 2003); b) increasing feldspars; c) increasing heavy-mineral concentration (HMC index); d) increasing hornblende, changing progressively in color from blue/green to green/brown (HCI index); e) successive appearance of chloritoid, staurolite, kyanite, fibrolitic and prismatic sillimanite (MMI index; Garzanti and Andò, 2007). Dickinson W.R. 1985. Interpreting provenance relations from detrital modes of sandstones. In: Zuffa G.G. (ed.), Reidel, NATO ASI Series 148: 333-361. Dickinson W.R. and C.A. Suczek. 1979. Plate tectonics and sandstone composition. Am. Assoc. Pet. Geol. Bull. 63: 2164-2172. Garzanti E. and S. Andò. 2007, Plate tectonics and heavy-mineral suites of modern sands. In: Mange M. and D. Wright (eds.), Elsevier, Developments in Sedimentology Series 58: 741-763. Garzanti E. and G. Vezzoli. 2003. A classification of metamorphic grains in sands based on their composition and grade. J. Sedimentary Res. 73: 830-837. Garzanti E., C. Doglioni, G. Vezzoli and S. Andò. 2007. Orogenic Belts and Orogenic Sediment Provenances. J. Geology 115: 315-334. Garzanti E., G. Vezzoli, S. Andó, C. France-Lanord, S.K. Singh and G. Foster. 2004. Sediment composition and focused erosion in collision orogens: the Brahmaputra case. Earth Planet. Sci. Lett. 220: 157-174. Najman Y. 2006. The detrital record of orogenesis: a review of approaches and techniques used in the Himalayan sedimentary basins. Earth Sci. Rev. 74: 1-72.

Transfers of proven oil and gas properties from individuals to controlled corporations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cash, L.S.; Dickens, T.L.

1985-12-01

Code Section 613A(c) (10) sets forth an exception, for transfers by individuals to their controlled corporations, to the general rule of section 613A(c)(9) denying percentage depletion to transferees of proven oil and gas properties. The proposed regulations attempt to provide guidelines to help taxpayers comply, and, although these regulations are not all-inclusive, they should be helpful to taxpayers who must rely on these provisions to prevent the loss of deductions for percentage depletion. Because of some apparent ambiguities in this area of the Internal Revenue Code and Treasury's inability to flesh out these ambiguities in its proposed regulations, affected taxpayersmore » should be cautious. 2 tables.« less

The Safe Drinking Water Act of 1974 and Its Role in Providing Access to Safe Drinking Water in the United States.

PubMed

Weinmeyer, Richard; Norling, Annalise; Kawarski, Margaret; Higgins, Estelle

2017-10-01

In 1974, President Gerald Ford signed into law the Safe Drinking Water Act, the first piece of legislation of its kind to provide a comprehensive regulatory framework for overseeing the nation's drinking water supply. The law has proven instrumental in setting standards for ensuring that the US population can access drinking water that is safe. However, the law delegates much of its monitoring requirements to states, creating, at times, a confusing and complicated system of standards that must be adhered to and enforced. Although it has proven valuable in the safety standards it specifies, the law's administration and enforcement poses tremendous challenges. © 2017 American Medical Association. All Rights Reserved.

Growth, shoot phenology and physiology of diverse seed sources of black spruce: II 23-year-old field trees

Treesearch

Kurt H. Johnsen; John R. Seiler; John E. Major

1996-01-01

Four sources of 23-year-old black spruce (Picea mariana (Mill.) B.S.P.) from a provenance test at the Petawawa National Forestry Institute (46° N, 77°30¢ W) were assessed for height growth, shoot phenology and seasonal gas exchange. The provenances were designated 7000 (Yukon, 63°34¢ N, 135°55¢ W), 6979 (Alberta 52°22¢ N, 115°15¢ W), 6908 (Ontario, 48°59¢ N, 80°38¢ W)...

Dermoscopy in differential diagnosis of palmar psoriasis and chronic hand eczema.

PubMed

Errichetti, Enzo; Stinco, Giuseppe

2016-04-01

Clinical differentiation between palmar psoriasis and chronic hand eczema may sometimes be a diagnostic challenge; in such cases histopathological analysis helps to differentiate the two conditions. In the present study, palmar psoriasis and chronic hand eczema were investigated using dermoscopy and the significance of specific dermoscopic features was assessed in order to improve their non-invasive differentiation. Ten patients with biopsy-proven palmar psoriasis and 11 patients with biopsy-proven chronic hand eczema were included in the study. We found that the presence of diffuse white scales was significant in palmar psoriasis whereas the presence of yellowish scales, brownish-orange dots/globules and yellowish-orange crusts was significant in chronic hand eczema. © 2015 Japanese Dermatological Association.

Common antigenic determinants of haemoglobin as basis of immunological cross-reactivity between chironomid species (Diptera, Chironomidae): studies with human and animal sera.

PubMed Central

Baur, X; Dewair, M; Haegele, K; Prelicz, H; Scholl, A; Tichy, H

1983-01-01

Chironomids, of which approximately 10,000 species exist, are reported to cause severe immediate type allergic diseases in man. In the present study, immunological cross-reactivity between 14 chironomid species from different continents was proven by RAST inhibition, double immunodiffusion and a new allergoprint technique, based upon PAGE separation of insect crude extracts. Using isolated chironomid haemoglobins and sera of sensitized persons, as well as rabbit antibodies against larval crude extract or against the haemoglobin fraction of Chironomus thummi, it could be proven that cross-reactivity derives at least predominantly from haemoglobin components with common antigenic determinants in the different species. Images Fig. 2 Fig. 7 Fig. 8 Fig. 9 PMID:6197219

Open access chemical probes for epigenetic targets

PubMed Central

Brown, Peter J; Müller, Susanne

2015-01-01

Background High attrition rates in drug discovery call for new approaches to improve target validation. Academia is filling gaps, but often lacks the experience and resources of the pharmaceutical industry resulting in poorly characterized tool compounds. Discussion The SGC has established an open access chemical probe consortium, currently encompassing ten pharmaceutical companies. One of its mandates is to create well-characterized inhibitors (chemical probes) for epigenetic targets to enable new biology and target validation for drug development. Conclusion Epigenetic probe compounds have proven to be very valuable and have not only spurred a plethora of novel biological findings, but also provided starting points for clinical trials. These probes have proven to be critical complementation to traditional genetic targeting strategies and provided sometimes surprising results. PMID:26397018

Rare earth element patterns in Archean high-grade metasediments and their tectonic significance

NASA Technical Reports Server (NTRS)

Taylor, Stuart Ross; Rudnick, Roberta L.; Mclennan, Scott M.; Eriksson, Kenneth A.

1986-01-01

REE data on metasedimentary rocks from two different types of high-grade Archean terrains are presented and analyzed. The value of REEs as indicators of crustal evolution is explained; the three geologic settings (in North America, Southern Africa, and Australia) from which the samples were obtained are described; and the data are presented in extensive tables and graphs and discussed in terms of metamorphic effects, the role of accessory phases, provenance, and tectonic implications (recycling, the previous extent of high-grade terrains, and a model of Archean crustal growth). The diversity of REE patterns in shallow-shelf metasediments is attributed to local provenance, while the Eu-depleted post-Archean patterns are associated with K-rich plutons from small, stable early Archean terrains.

Pharmacological properties of Datura stramonium L. as a potential medicinal tree: An overview

PubMed Central

Soni, Priyanka; Siddiqui, Anees Ahmad; Dwivedi, Jaya; Soni, Vishal

2012-01-01

India has a great wealth of various naturally occurring plant drugs which have great potential pharmacological activities. Datura stramonium (D. stramonium) is one of the widely well known folklore medicinal herbs. The troublesome weed, D. stramonium is a plant with both poisonous and medicinal properties and has been proven to have great pharmacological potential with a great utility and usage in folklore medicine. D. stromonium has been scientifically proven to contain alkaloids, tannins, carbohydrates and proteins. This plant has contributed various pharmacological actions in the scientific field of Indian systems of medicines like analgesic and antiasthmatic activities. The present paper presents an exclusive review work on the ethnomedical, phytochemical, pharmacological activities of this plant. PMID:23593583

Middle and inner ear malformations in mutation-proven branchio-oculo-facial (BOF) syndrome: case series and review of the literature.

PubMed

Carter, Melissa T; Blaser, Susan; Papsin, Blake; Meschino, Wendy; Reardon, Willie; Klatt, Regan; Babul-Hirji, Riyana; Milunsky, Jeff; Chitayat, David

2012-08-01

Hearing impairment is common in individuals with branchio-oculo-facial (BOF) syndrome. The majority of described individuals have conductive hearing impairment due to malformed ossicles and/or external canal stenosis or atresia, although a sensorineural component to the hearing impairment in BOF syndrome is increasingly being reported. Sophisticated computed tomography (CT) of the temporal bone has revealed middle and inner ear malformations in three previous reports. We present middle and inner ear abnormalities in three additional individuals with mutation-proven BOF syndrome. We suggest that temporal bone CT imaging be included in the medical workup of a child with BOF syndrome, in order to guide management. Copyright © 2012 Wiley Periodicals, Inc.

Space exploration initiative (SEI) logistics support lessons from the DoD

NASA Astrophysics Data System (ADS)

Cox, John R.; McCoy, Walbert G.; Jenkins, Terence

Proven and innovative logistics management approaches and techniques used for developing and supporting DoD and Strategic Defense Initiative Office (SDIO) systems are described on the basis of input from DoD to the SEI Synthesis Group; SDIO-developed logistics initiatives, innovative tools, and methodologies; and logistics planning support provided to the NASA/Johnson Planet Surface System Office. The approach is tailored for lunar/Martian surface operations, and provides guidelines for the development and management of a crucial element of the SEI logistics support program. A case study is presented which shows how incorporation of DoD's proven and innovative logistics management approach, tools, and techniques can substantially benefit early logistics planning for SEI, while also implementing many of DoD's recommendations for SEI.

Effect of light regime and provenance on leaf characteristics, growth and flavonoid accumulation in Cyclocarya paliurus (Batal) Iljinskaja coppices.

PubMed

Liu, Yang; Qian, Chenyun; Ding, Sihui; Shang, Xulan; Yang, Wanxia; Fang, Shengzuo

2016-12-01

As a highly valued and multiple function tree species, Cyclocarya paliurus is planted and managed for timber production and medical use. However, limited information is available on its genotype selection and cultivation for growth and phytochemicals. Responses of growth and secondary metabolites to light regimes and genotypes are useful information to determine suitable habitat conditions for the cultivation of medicinal plants. Both light regime and provenance significantly affected the leaf characteristics, leaf flavonoid contents, biomass production and flavonoid accumulation per plant. Leaf thickness, length of palisade cells and chlorophyll a/b decreased significantly under shading conditions, while leaf areas and total chlorophyll content increased obviously. In the full light condition, leaf flavonoid contents showed a bimodal temporal variation pattern with the maximum observed in August and the second peak in October, while shading treatment not only reduced the leaf content of flavonoids but also delayed the peak appearing of the flavonoid contents in the leaves of C. paliurus. Strong correlations were found between leaf thickness, palisade length, monthly light intensity and measured flavonoid contents in the leaves of C. paliurus. Muchuan provenance with full light achieved the highest leaf biomass and flavonoid accumulation per plant. Cyclocarya paliurus genotypes show diverse responses to different light regimes in leaf characteristics, biomass production and flavonoid accumulation, highlighting the opportunity for extensive selection in the leaf flavonoid production.

Incidence and Severity of Acute Cellular Rejection in Recipients Undergoing Adult Living Donor or Deceased Donor Liver Transplantation123

PubMed Central

Shaked, Abraham; Ghobrial, R. Mark; Merion, Robert M.; Shearon, Tempie H.; Emond, Jean C.; Fair, Jeffrey H.; Fisher, Robert A.; Kulik, Laura M.; Pruett, Timothy L.; Terrault, Norah A.

2013-01-01

Living donor liver transplantation (LDLT) may have better immunological outcomes compared to deceased donor liver transplantation (DDLT). The aim of this study was to analyze the incidence of acute cellular rejection (ACR) after LDLT and DDLT. Data from the Adult-to-Adult Living Donor Liver Transplantation (A2ALL) Retrospective Cohort Study on 593 liver transplants done between May 1998 and March 2004 were studied (380 LDLT; 213 DDLT). Median LDLT and DDLT follow-up was 778 and 713 days, respectively. Rates of clinically treated and biopsy-proven ACR were compared. There were 174 (46%) LDLT and 80 (38%) DDLT recipients with ≥1 clinically treated episodes of ACR, whereas 103 (27%) LDLT and 58 (27%) DDLT recipients had ≥1 biopsy-proven ACR episode. A higher proportion of LDLT recipients had clinically treated ACR (P=0.052), but this difference was largely attributable to one center. There were similar proportions of biopsy-proven rejection (P=0.97) and graft loss due to rejection (P=0.16). Longer cold ischemia time was associated with a higher rate of ACR in both groups despite much shorter median cold ischemia time in LDLT. These data do not show an immunological advantage for LDLT, and therefore do not support the application of unique post-transplant immunosuppression protocols for LDLT recipients. PMID:19120082

Surgical treatment of atrial fibrillation.

PubMed

Pagé, Pierre; Skanes, Allan C

2005-09-01

Surgery aims to eliminate atrial fibrillation (AF) through direct modification of the arrhythmogenic substratum. The Maze procedure, developed two decades ago, has proven to be clearly effective in restoring sinus rhythm in AF patients with or without associated organic cardiac disorders. Indications for surgery may be tailored to the clinical situation involved. In patients with continuous AF associated with structural heart disease (eg, valvular, congenital or coronary artery disease), the performance of a concomitant AF ablation procedure proven to add minimal morbidity to the operation may be highly beneficial to patient outcome. It is likely, although not entirely proven, that the restoration and maintenance of sinus rhythm after mitral valve surgery promotes survival by preventing tachycardia-induced cardiomyopathy and stroke. Novel strategies for AF surgery involve the use of alternate energy sources to create the lines of block in the atria and the simplification of the lesion pattern compared with the earlier Cox-Maze procedure. Published clinical data support the contention that left atrial ablation techniques performed concomitantly with valvular and/or coronary artery bypass surgery are likely to result in a 70% to 90% cure rate of AF in patients with preoperatively documented AF. Despite the lack of evidence for long-term outcome benefit, intraoperative pulmonary vein ablation, feasible with minimal morbidity, clearly appears to be an improvement over simply ignoring AF in patients undergoing cardiac surgery. Left atrial appendectomy appears warranted in patients with chronic persistent AF.

Provenance tracking for scientific software toolchains through on-demand release and archiving

NASA Astrophysics Data System (ADS)

Ham, David

2017-04-01

There is an emerging consensus that published computational science results must be backed by a provenance chain tying results to the exact versions of input data and the code which generated them. There is also now an impressive range of web services devoted to revision control of software, and the archiving in citeable form of both software and input data. However, much scientific software itself builds on libraries and toolkits, and these themselves have dependencies. Further, it is common for cutting edge research to depend on the latest version of software in online repositories, rather than the official release version. This creates a situation in which an author who wishes to follow best practice in recording the provenance chain of their results must archive and cite unreleased versions of a series of dependencies. Here, we present an alternative which toolkit authors can easily implement to provide a semi-automatic mechanism for creating and archiving custom software releases of the precise version of a package used in a particular simulation. This approach leverages the excellent services provided by GitHub and Zenodo to generate a connected set of citeable DOIs for the archived software. We present the integration of this workflow into the Firedrake automated finite element framework as a practical example of this approach in use on a complex geoscientific tool chain in practical use.

Late to middle Pleistocene Arctic glacial history implied from a sedimentary record from the Northwind Ridge

NASA Astrophysics Data System (ADS)

Liu, Y.; Dong, L.; Shi, X.; Zhu, A.

2017-12-01

Abstract: Sediment core ARC6-C21 collected from the Northwind Ridge, western Arctic Ocean, covers the late to middle Quaternary (Marine Isotope Stages (MIS) 1-11), as estimated by correlation to earlier proposed Arctic Ocean stratigraphies and AMS14C dating of the youngest sediments. Detailed examination of the elemental composition of sediment along with grain size in core ARC6-C21 provides important new information about sedimentary environments and provenance. We use increased contents of coarse debris as an indicator of glacier collapse events at the margins of the western Arctic Ocean, and identify the provenance of these events from geochemical composition. Notably, peaks of MgO and CaO, including large dropstones, presumably track the Laurentide Ice Sheet (LIS) discharge events to the Arctic Ocean. Major LIS inputs occurred during the stratigraphic intervals estimated as MIS 3, intra-MIS 5 and 7 events, MIS 8, and MIS 10. Inputs from the East Siberian Ice Sheet (ESIS) and/or Eurasia Ice Sheet (EIS)are inferred from peaks of SiO2, K2O and Na2O associated with coarse sediment. Major ESIS and/or EIS sedimentary events occurred in the intervals estimated as MIS 2, MIS 4, MIS 6, MIS 8 and MIS 10. Keywords: Sediment core, Pleistocene, western Arctic Ocean, geochemistry, grain size, sediment provenance, glaciations

Antral follicle count in normal (fertility-proven) and infertile Indian women.

PubMed

Agarwal, Arjit; Verma, Ashish; Agarwal, Shubhra; Shukla, Ram Chandra; Jain, Madhu; Srivastava, Arvind

2014-07-01

Antral follicle count (AFC) has been labeled as the most accurate biomarker to assess female fecundity. Unfortunately, no baseline Indian data exists, and we continue using surrogate values from the Western literature (inferred from studies on women, grossly different than Indian women in morphology and genetic makeup). (1) To establish the role of AFC as a function of ovarian reserve in fertility-proven and in subfertile Indian women. (2) To establish baseline cut-off AFC values for Indian women. Prospective observational case-control study. Thirty patients undergoing workup for infertility were included and compared to equal number of controls (women with proven fertility). The basal ovarian volume and AFC were measured by endovaginal. USG the relevant clinical data and hormonal assays were charted for every patient. SPSS platform was used to perform the Student's t-test and Mann-Whitney U-test for intergroup comparisons. Correlations were determined by Pearson's ranked correlation coefficient. Regression analysis revealed the highest correlation of AFC and age in fertile and infertile patients with difference in mean AFC of both the groups. Comparison of the data recorded for cases and controls showed no significant difference in the mean ovarian volume. AFC has the closest association with chronological age in normal and infertile Indian women. The same is lower in infertile women than in matched controls. Baseline and cut-off values in Indian women are lower than that mentioned in the Western literature.

Geographical and genetic factors do not account for significant differences in the clinical spectrum of giant cell arteritis in southern europe.

PubMed

Gonzalez-Gay, Miguel A; Boiardi, Luigi; Garcia-Porrua, Carlos; Macchioni, Pierluigi; Amor-Dorado, Juan C; Salvarani, Carlo

2004-03-01

To investigate whether genetic and geographical differences may influence the clinical spectrum of giant cell arteritis (GCA), we compared the demographic and clinical features of patients with biopsy-proven GCA from Reggio Emilia (Northern Italy) and Lugo (Northwest Spain) during a 15-year period. We performed a retrospective review of the case records of all patients diagnosed with biopsy-proven GCA at Hospital Xeral-Calde (Lugo, Spain) and Hospital Santa Maria Nuova (Reggio Emilia, Italy) between 1 January 1986 and 31 December 2001. Both hospitals are the only referral centers for populations living in central Galicia and central Emilia Romagna, respectively. During the period of study, 194 Lugo residents and 126 Reggio Emilia residents were diagnosed with biopsy proven GCA. Reggio Emilia patients were more likely to be female (74% vs 54%; p = 0.0001). Although Lugo patients complained of headache (86%) more commonly than did those from Reggio Emilia (77%), the difference was only marginally significant (p = 0.05). The proportion of patients with visual manifestations or visual loss was remarkably similar (22% for visual manifestations and 17% for visual loss in Lugo and 29% and 21% for Reggio Emilia residents). The mean erythrocyte sedimentation rate prior to the onset of therapy was also similar. Apart from differences in sex, the clinical spectrum of GCA in these 2 Southern European regions was similar.

Probiotics--a helpful additional therapy for bacterial vaginosis.

PubMed

Bodean, O; Munteanu, O; Cirstoiu, C; Secara, D; Cirstoiu, M

2013-01-01

Bacterial vaginosis is a condition of unknown etiology, associated with an imbalance of the normal vaginal microbiota, characterized by a high recurrence rate despite of classical therapy solutions. Probiotics are microorganisms, which taken in adequate amounts, are proven to bring health benefits in human and animal bodies, by re-establishing the normal flora at different levels. The present article studies the possibility of using probiotic treatment as an adjuvant therapy for nonspecific vaginosis and reducing its recurrence rate. We have evaluated the evolution of patients with bacterial vaginosis who received the classical antibiotic therapy and a probiotic product. The study group consisted of 173 non-pregnant, sexually active patients, 20-45 years old, with no additional health problems and no contraceptive undergoing treatment, which have been admitted to the department of Obstetrics and Gynecology of the Bucharest Emergency University Hospital between 1.01.2012-31.12.2012.The bacteriological evaluation was made on cervical and vaginal cultures. From a total of 173 patients, those who used probiotics oral capsules while taking an antibiotic had lower recurrence rates. More than a half of women who did not use any probiotic product had 3 or more relapse episodes per year. Vaginal capsules with probiotics have also proven to be useful in lowering the recurrence rate, but research is still needed. Probiotic products are proven to be a helpful adjuvant therapy for bacterial vaginosis, with no adverse outcomes.

Metabolic brain imaging correlated with clinical features of brain tumors

DOE Office of Scientific and Technical Information (OSTI.GOV)

Alavi, J.; Alavi, A.; Dann, R.

1985-05-01

Nineteen adults with brain tumors have been studied with positron emission tomography utilizing FDG. Fourteen had biopsy proven cerebral malignant glioma, one each had meningioma, hemangiopericytoma, primitive neuroectodermal tumor (PNET), two had unbiopsied lesions, and one patient had an area of biopsy proven radiation necrosis. Three different patterns of glucose metabolism are observed: marked increase in metabolism at the site of the known tumor in (10 high grade gliomas and the PNET), lower than normal metabolism at the tumor (in 1 grade II glioma, 3 grade III gliomas, 2 unbiopsied low density nonenhancing lesions, and the meningioma), no abnormality (1more » enhancing glioma, the hemangiopericytoma and the radiation necrosis.) The metabolic rate of the tumor or the surrounding brain did not appear to be correlated with the history of previous irradiation or chemotherapy. Decreased metabolism was frequently observed in the rest of the affected hemisphere and in the contralateral cerebellum. Tumors of high grade or with enhancing CT characteristics were more likely to show increased metabolism. Among the patients with proven gliomas, survival after PETT scan tended to be longer for those with low metabolic activity tumors than for those with highly active tumors. The authors conclude that PETT may help to predict the malignant potential of tumors, and may add useful clinical information to the CT scan.« less

Geochemical provenance of sediments from the northern East China Sea document a gradual migration of the Asian Monsoon belt over the past 400,000 years

NASA Astrophysics Data System (ADS)

Beny, François; Toucanne, Samuel; Skonieczny, Charlotte; Bayon, Germain; Ziegler, Martin

2018-06-01

The reconstruction of the long-term evolution of the East Asian Monsoon remains controversial. In this study, we aim to give a new outlook on this evolution by studying a 400 kyr long sediment record (U1429) from the northern East China Sea recovered during IODP Expedition 346. Neodymium isotopic ratios and rare earth element concentrations of different grain-size fractions reveal significant provenance changes of the sediments in the East China Sea between East Asian continental sources (mainly Yellow River) and sediment contributions from the Japanese Archipelago. These provenance changes are interpreted as the direct impact of sea level changes, due to the reorganization of East Asian river mouth locations and ocean circulation on the East China Sea shelf, and latitudinal shifts of the intertropical convergence zone (ITCZ) from the interior of Asia to the western North Pacific Ocean. Our data reveal the dominance of winter and summer monsoons during glacial and interglacial periods, respectively, except for glacial MIS 6d (∼150-180 ka) during which unexpected summer monsoon dominated conditions prevailed. Finally, our data suggests a possible strengthening of the interglacial summer monsoon rainfalls over the East Asian continent and Japan throughout the past 400 kyr, and between MIS 11 and MIS 5 in particular. This could result from a gradual northward migration of the ITCZ.

Neuroimaging Study Designs, Computational Analyses and Data Provenance Using the LONI Pipeline

PubMed Central

Dinov, Ivo; Lozev, Kamen; Petrosyan, Petros; Liu, Zhizhong; Eggert, Paul; Pierce, Jonathan; Zamanyan, Alen; Chakrapani, Shruthi; Van Horn, John; Parker, D. Stott; Magsipoc, Rico; Leung, Kelvin; Gutman, Boris; Woods, Roger; Toga, Arthur

2010-01-01

Modern computational neuroscience employs diverse software tools and multidisciplinary expertise to analyze heterogeneous brain data. The classical problems of gathering meaningful data, fitting specific models, and discovering appropriate analysis and visualization tools give way to a new class of computational challenges—management of large and incongruous data, integration and interoperability of computational resources, and data provenance. We designed, implemented and validated a new paradigm for addressing these challenges in the neuroimaging field. Our solution is based on the LONI Pipeline environment [3], [4], a graphical workflow environment for constructing and executing complex data processing protocols. We developed study-design, database and visual language programming functionalities within the LONI Pipeline that enable the construction of complete, elaborate and robust graphical workflows for analyzing neuroimaging and other data. These workflows facilitate open sharing and communication of data and metadata, concrete processing protocols, result validation, and study replication among different investigators and research groups. The LONI Pipeline features include distributed grid-enabled infrastructure, virtualized execution environment, efficient integration, data provenance, validation and distribution of new computational tools, automated data format conversion, and an intuitive graphical user interface. We demonstrate the new LONI Pipeline features using large scale neuroimaging studies based on data from the International Consortium for Brain Mapping [5] and the Alzheimer's Disease Neuroimaging Initiative [6]. User guides, forums, instructions and downloads of the LONI Pipeline environment are available at http://pipeline.loni.ucla.edu. PMID:20927408

Current controlled vocabularies are insufficient to uniquely map molecular entities to mass spectrometry signal.

PubMed

Smith, Rob; Taylor, Ryan M; Prince, John T

2015-01-01

The comparison of analyte mass spectrometry precursor (MS1) signal is central to many proteomic (and other -omic) workflows. Standard vocabularies for mass spectrometry exist and provide good coverage for most experimental applications yet are insufficient for concise and unambiguous description of data concepts spanning the range of signal provenance from a molecular perspective (e.g. from charged peptides down to fine isotopes). Without a standard unambiguous nomenclature, literature searches, algorithm reproducibility and algorithm evaluation for MS-omics data processing are nearly impossible. We show how terms from current official ontologies are too vague or ambiguous to explicitly map molecular entities to MS signals and we illustrate the inconsistency and ambiguity of current colloquially used terms. We also propose a set of terms for MS1 signal that uniquely, succinctly and intuitively describe data concepts spanning the range of signal provenance from full molecule downs to fine isotopes. We suggest that additional community discussion of these terms should precede any further standardization efforts. We propose a novel nomenclature that spans the range of the required granularity to describe MS data processing from the perspective of the molecular provenance of the MS signal. The proposed nomenclature provides a chain of succinct and unique terms spanning the signal created by a charged molecule down through each of its constituent subsignals. We suggest that additional community discussion of these terms should precede any further standardization efforts.

Testing palaeotectonic models for the Internal Hellenides with sediment provenance

NASA Astrophysics Data System (ADS)

Meinhold, G.

2009-04-01

The Internal Hellenides of Greece are a result of the Alpine-Himalayan orogen. The relationships between different pre-Alpine crustal fragments of the Internal Hellenides are now masked by younger (Mesozoic to Cenozoic) complex structural and metamorphic events. This, together with the scarcity of biostratigraphic, geochronological and palaeomagnetic data, has given rise to equivocal palaeotectonic models and interpretations. However, the age and origin of pre-Alpine basement units in the Internal Hellenides has important implications for our in-depth understanding of the evolution of North Gondwana-derived terranes and consequently for alternative palaeotectonic reconstructions for the Palaeozoic and Mesozoic. A multidisciplinary sediment provenance study was undertaken since sedimentary rocks can provide information about rock lithologies in the source area, which have often been destroyed and recycled during ancient plate tectonic processes. Palaeozoic and Mesozoic sedimentary rocks from key areas of the Internal Hellenides were analysed using whole-rock major- and trace-element geochemistry (XRF, ICPMS), detrital chrome spinel, garnet, white mica and rutile chemistry (EMP), detrital zircon geochronology (SHRIMP, LA-ICPMS) and biostratigraphic analysis. These new data are used to constrain terrane accretion processes and the provenance of crustal sources for sediments during Palaeozoic and Mesozoic times and thus will test palaeotectonic models for the Internal Hellenides. This is expected to shed light on the Palaeo- and Neotethyan evolution in the Eastern Mediterranean.

Hoeffding Type Inequalities and their Applications in Statistics and Operations Research

NASA Astrophysics Data System (ADS)

Daras, Tryfon

2007-09-01

Large Deviation theory is the branch of Probability theory that deals with rare events. Sometimes, these events can be described by the sum of random variables that deviates from its mean more than a "normal" amount. A precise calculation of the probabilities of such events turns out to be crucial in a variety of different contents (e.g. in Probability Theory, Statistics, Operations Research, Statistical Physics, Financial Mathematics e.t.c.). Recent applications of the theory deal with random walks in random environments, interacting diffusions, heat conduction, polymer chains [1]. In this paper we prove an inequality of exponential type, namely theorem 2.1, which gives a large deviation upper bound for a specific sequence of r.v.s. Inequalities of this type have many applications in Combinatorics [2]. The inequality generalizes already proven results of this type, in the case of symmetric probability measures. We get as consequences to the inequality: (a) large deviations upper bounds for exchangeable Bernoulli sequences of random variables, generalizing results proven for independent and identically distributed Bernoulli sequences of r.v.s. and (b) a general form of Bernstein's inequality. We compare the inequality with large deviation results already proven by the author and try to see its advantages. Finally, using the inequality, we solve one of the basic problems of Operations Research (bin packing problem) in the case of exchangeable r.v.s.

Integration of bed characteristics, geochemical tracers, current measurements, and numerical modeling for assessing the provenance of beach sand in the San Francisco Bay Coastal System

USGS Publications Warehouse

Barnard, Patrick L.; Foxgrover, Amy C.; Elias, Edwin P.L.; Erikson, Li H.; Hein, James; McGann, Mary; Mizell, Kira; Rosenbauer, Robert J.; Swarzenski, Peter W.; Takesue, Renee K.; Wong, Florence L.; Woodrow, Don

2013-01-01

Over 150 million m3 of sand-sized sediment has disappeared from the central region of the San Francisco Bay Coastal System during the last half century. This enormous loss may reflect numerous anthropogenic influences, such as watershed damming, bay-fill development, aggregate mining, and dredging. The reduction in Bay sediment also appears to be linked to a reduction in sediment supply and recent widespread erosion of adjacent beaches, wetlands, and submarine environments. A unique, multi-faceted provenance study was performed to definitively establish the primary sources, sinks, and transport pathways of beach-sized sand in the region, thereby identifying the activities and processes that directly limit supply to the outer coast. This integrative program is based on comprehensive surficial sediment sampling of the San Francisco Bay Coastal System, including the seabed, Bay floor, area beaches, adjacent rock units, and major drainages. Analyses of sample morphometrics and biological composition (e.g., Foraminifera) were then integrated with a suite of tracers including 87Sr/86Sr and 143Nd/144Nd isotopes, rare earth elements, semi-quantitative X-ray diffraction mineralogy, and heavy minerals, and with process-based numerical modeling, in situ current measurements, and bedform asymmetry to robustly determine the provenance of beach-sized sand in the region.

Morphological and physiological divergences within Quercus ilex support the existence of different ecotypes depending on climatic dryness

PubMed Central

Peguero-Pina, José Javier; Sancho-Knapik, Domingo; Barrón, Eduardo; Camarero, Julio Jesús; Vilagrosa, Alberto; Gil-Pelegrín, Eustaquio

2014-01-01

Background and Aims Several studies show apparently contradictory findings about the functional convergence within the Mediterranean woody flora. In this context, this study evaluates the variability of functional traits within holm oak (Quercus ilex) to elucidate whether provenances corresponding to different morphotypes represent different ecotypes locally adapted to the prevaling stress levels. Methods Several morphological and physiological traits were measured at leaf and shoot levels in 9-year-old seedlings of seven Q. ilex provenances including all recognized morphotypes. Plants were grown in a common garden for 9 years under the same environmental conditions to avoid possible biases due to site-specific characteristics. Key Results Leaf morphometry clearly separates holm oak provenances into ‘ilex’ (more elongated leaves with low vein density) and ‘rotundifolia’ (short and rounded leaves with high vein density) morphotypes. Moreover, these morphotypes represent two consistent and very contrasting functional types in response to dry climates, mainly in terms of leaf area, major vein density, leaf specific conductivity, resistance to drought-induced cavitation and turgor loss point. Conclusions The ‘ilex’ and ‘rotundifolia’ morphotypes correspond to different ecotypes as inferred from their contrasting functional traits. To the best of our knowledge, this is the first time that the combined use of morphological and physiological traits has provided support for the concept of these two holm oak morphotypes being regarded as two different species. PMID:24941998

Reinterpretation of the palynology and age of Laramide syntectonic deposits, southwestern Montana, and revision of the Beaverhead Group

NASA Astrophysics Data System (ADS)

Nichols, D. J.; Perry, W. J., Jr.; Haley Johns, J. C.

1985-02-01

New palynological data from syntectonic deposits in southwestern Montana have major temporal implications for Laramide structural relations in the northern Rocky Mountains. Conglomerate and associated sandstones representing the bulk of material eroded from the thrust-faulted margin of the Blacktail-Snowcrest foreland massif are middle Campanian (Aquilapollenites senonicus Interval Zone; estimated absolute age 78 81 Ma). As a major consequence, the foreland buttress responsible for the shape of the southwestern Montana recess of the Cordilleran thrust belt was uplifted and in place by middle Campanian time. Palynomorph assemblages from the Campanian deposits include reworked spores of Paleozoic age that are evidence of provenance. Other less precisely dated syntectonic units in the area differ in age and provenance as well as lithology. Formerly, all these deposits were assigned to the Beaverhead Formation, which is raised to group status herein. The stratigraphic unit shed from the Blacktail-Snowcrest uplift is raised to formation status as the Lima Conglomerate. The term “Beaverhead Group” is restricted to the Lima Conglomerate and to contemporaneous and younger conglomeratic units that differ in lithology and probably in provenance; older sandstone units are removed from the Beaverhead Group. Deposits at the original type section of the Beaverhead Formation are not precisely dated but are no older than Campanian and probably no younger than early Maestrichtian.

Depositional characteristics of the Indus Group in the India-Asia collision zone, northwest India

NASA Astrophysics Data System (ADS)

Bhattacharya, G.; Robinson, D.; Orme, D. A.; Najman, Y.; Khanolkar, S.

2017-12-01

The Indus Group in northwest India are synorogenic sedimentary rocks deposited within the Indus-Yarlung Suture Zone between 50-6 Ma in an intermontane basin, and record the tectono-depositional history of the Indus basin following the India-Asia plate collision at 60-50 Ma. Controversy surrounds the provenance and timing of deposition of two major Indus Group formations, the Basgo and Temesgam formations. Researchers argue between an Asian or Indian origin and whether these formations are Maastrichtian-Early Eocene or Late Oligocene in age. In the central Ladakh region in northwest India, the Zanskar Gorge bisects the Indus Group. Thus, Zanskar Gorge section is well-studied with measured sections, point counting, illite crystallinity, apatite fission track, Ar-Ar detrital white mica and U-Pb detrital zircon ages. In eastern Ladakh, works on the Indus Group are fewer. The purpose of this study is to document both the Basgo and Temesgam formations in the Indus Group along four sections in eastern Ladakh and, if possible, correlate the results to the Zanskar Gorge section. The four sections are the Domkhar-Skurbuchan, Skinning-Khalsi, Temesgam-Nurla and Likir-Taruche sections. Measured sections, conglomerate clast counts and sandstone point counting analyses assess the facies characteristics and provenance of the Indus Group. The results of these data will be presented. Interpretation of the provenance as it applies to these data will be discussed.

Detrital zircon U-Pb geochronology, Lu-Hf isotopes and REE geochemistry constrains on the provenance and tectonic setting of Indochina Block in the Paleozoic

NASA Astrophysics Data System (ADS)

Wang, Ce; Liang, Xinquan; Foster, David A.; Fu, Jiangang; Jiang, Ying; Dong, Chaoge; Zhou, Yun; Wen, Shunv; Van Quynh, Phan

2016-05-01

In situ U-Pb geochronology, Lu-Hf isotopes and REE geochemical analyses of detrital zircons from Cambrian-Devonian sandstones in the Truong Son Belt, central Vietnam, are used to provide the information of provenance and tectonic evolution of the Indochina Block. The combined detrital zircon age spectra of all of the samples ranges from 3699 Ma to 443 Ma and shows with dominant age peaks at ca. 445 Ma and 964 Ma, along with a number of age populations at 618-532 Ma, 1160-1076 Ma, 1454 Ma, 1728 Ma and 2516 Ma. The zircon age populations are similar to those from time equivalent sedimentary sequences in continental blocks disintegrated from the East Gondwana during the Phanerozoic. The younger zircon grains with age peaks at ca. 445 Ma were apparently derived from middle Ordovician-Silurian igneous and metamorphic rocks in Indochina. Zircons with ages older than about 600 Ma were derived from other Gondwana terrains or recycled from the Precambrian basement of the Indochina Block. Similarities in the detrital zircon U-Pb ages suggest that Paleozoic strata in the Indochina, Yangtze, Cathaysia and Tethyan Himalayas has similar provenance. This is consistent with other geological constrains indicating that the Indochina Block was located close to Tethyan Himalaya, northern margin of the India, and northwestern Australia in Gondwana.

Frequency of familial Mediterranean fever (MEFV) gene mutations in patients with biopsy-proven primary glomerulonephritis.

PubMed

Huzmeli, Can; Candan, Ferhan; Bagci, Gokhan; Alaygut, Demet; Yilmaz, Ali; Gedikli, Asim; Bagci, Binnur; Timucin, Meryem; Sezgin, Ilhan; Kayatas, Mansur

2017-11-01

Primary glomerulopathies are those disorders that affect glomerular structure, function, or both in the absence of a multisystem disorder. We aimed to evaluate the frequency of MEFV gene mutation to show possible coexistence of FMF in patients diagnosed with biopsy-proven primary glomerulonephritis (GN). A total of 64 patients with biopsy-proven primary GN were included in the study. MEFV gene mutations examined retrospectively. The mean age of patients was 39.6 ± 13.4 (range 18-69), 35 of patients were female and 29 of patients were male. Of the 64 patients, 17 were mesangial proliferative glomerulonephritis (MsPGN), 15 were IgA nephropathy (IgAN), 12 were membranous glomerulonephritis (MGN), 11 were focal segmental glomerulosclerosis (FSGS), three were membranous proliferative glomerulonephritis (MPGN), three were immune complex glomerulonephritis (ICGN), two were minimal change disease (MCD), and one was IgM nephropathy (IgMN). MEFV gene mutation was detected in 35.9% (23) of these patients. The most frequently detected mutations were E148Q and M694V. Twelve cases (18.75% of GN patients) with MEFV gene mutation were diagnosed as FMF phenotype I. The frequency of MEFV gene mutation was detected at a high rate of 35.9%. Further studies with larger populations are needed to clarify the importance of these mutations on clinical progression of glomerulonephritis.

Horsetail

MedlinePlus

... palustre. This plant contains chemicals that can poison cattle, but toxicity in people has not been proven. ... contains thiaminase, a chemical that breaks down thiamine. Cattle that eat a lot of horsetail have developed ...

Health Fraud

MedlinePlus

Health fraud involves selling drugs, devices, foods, or cosmetics that have not been proven effective. Keep in ... you from getting the treatment you really need. Health fraud scams can be found everywhere, promising help ...

75 FR 12507 - Manufacturing Council

Federal Register 2010, 2011, 2012, 2013, 2014

2010-03-16

... in the selection of Council members include candidates' proven experience in developing and marketing... contact information such as mailing address, fax, e-mail, fixed and mobile phone numbers and support staff...

T Cells

MedlinePlus

... cells — have proven successful in treating animals with experimental allergic encephalomyelitis (EAE), an animal model of MS. Pilot clinical trials are in progress. Future experimental therapies may involve antibodies directed against the cytokines ...

Compassionate Friends

MedlinePlus

... Online Communities Family Support Employees / Co-Workers About Leadership & Board Financial Information TCF Foundation Partnerships Media How ... To The Newly Bereaved What We Do Chapter Leadership Time has proven that in caring and sharing ...

Modeling the Provenance of Crater Ejecta

NASA Astrophysics Data System (ADS)

Huang, Ya-Huei; Minton, David A.

2014-11-01

The cratering history of the Moon provides a way to study the violent early history of our early solar system. Nevertheless, we are still limited in our ability to interpret the lunar cratering history because the complex process of generation and subsequent transportation and destruction of impact melt products is relatively poorly understood. Here we describe a preliminary model for the transport of datable impact melt products by craters over Gy timescales on the lunar surface. We use a numerical model based on the Maxwell Z-model to model the exhumation and transport of ejecta material from within the excavation flow of a transient crater. We describe our algorithm for rapidly estimating the provenance of ejecta material for use in a Monte Carlo cratering code capable of simulating lunar cratering over Gy timescales.

The CELSS Antarctic Analog Project: An Advanced Life Support Testbed at the Amundsen-Scott South Pole Station, Antarctica

NASA Technical Reports Server (NTRS)

Straight, Christian L.; Bubenheim, David L.; Bates, Maynard E.; Flynn, Michael T.

1994-01-01

CELSS Antarctic Analog Project (CAAP) represents a logical solution to the multiple objectives of both the NASA and the National Science Foundation (NSF). CAAP will result in direct transfer of proven technologies and systems, proven under the most rigorous of conditions, to the NSF and to society at large. This project goes beyond, as it must, the generally accepted scope of CELSS and life support systems including the issues of power generation, human dynamics, community systems, and training. CAAP provides a vivid and starkly realistic testbed of Controlled Ecological Life Support System (CELSS) and life support systems and methods. CAAP will also be critical in the development and validation of performance parameters for future advanced life support systems.

Is islet transplantation a realistic approach to curing diabetes?

PubMed

Jin, Sang-Man; Kim, Kwang-Won

2017-01-01

Since the report of type 1 diabetes reversal in seven consecutive patients by the Edmonton protocol in 2000, pancreatic islet transplantation has been reappraised based on accumulated clinical evidence. Although initially expected to therapeutically target long-term insulin independence, islet transplantation is now indicated for more specific clinical benefits. With the long-awaited report of the first phase 3 clinical trial in 2016, allogeneic islet transplantation is now transitioning from an experimental to a proven therapy for type 1 diabetes with problematic hypoglycemia. Islet autotransplantation has already been therapeutically proven in chronic pancreatitis with severe abdominal pain refractory to conventional treatments, and it holds promise for preventing diabetes after partial pancreatectomy due to benign pancreatic tumors. Based on current evidence, this review focuses on islet transplantation as a realistic approach to treating diabetes.

Economics of the solid rocket booster for space shuttle

NASA Technical Reports Server (NTRS)

Rice, W. C.

1979-01-01

The paper examines economics of the solid rocket booster for the Space Shuttle. Costs have been held down by adapting existing technology to the 146 in. SRB selected, with NASA reducing the cost of expendables and reusing the expensive nonexpendable hardware. Drop tests of Titan III motor cases and nozzles proved that boosters can survive water impact at vertical velocities of 100 ft/sec so that SRB components can be reused. The cost of expendables was minimized by selecting proven propellants, insulation, and nozzle ablatives of known costs; the propellant has the lowest available cost formulation, and low cost ablatives, such as pitch carbon fibers, will be used when available. Thus, the use of proven technology and low cost expendables will make the SRB an economical booster for the Space Shuttle.

Matrix of moments of the Legendre polynomials and its application to problems of electrostatics

NASA Astrophysics Data System (ADS)

Savchenko, A. O.

2017-01-01

In this work, properties of the matrix of moments of the Legendre polynomials are presented and proven. In particular, the explicit form of the elements of the matrix inverse to the matrix of moments is found and theorems of the linear combination and orthogonality are proven. On the basis of these properties, the total charge and the dipole moment of a conducting ball in a nonuniform electric field, the charge distribution over the surface of the conducting ball, its multipole moments, and the force acting on a conducting ball situated on the axis of a nonuniform axisymmetric electric field are determined. All assertions are formulated in theorems, the proofs of which are based on the properties of the matrix of moments of the Legendre polynomials.

The OceanLink Project

NASA Astrophysics Data System (ADS)

Narock, T.; Arko, R. A.; Carbotte, S. M.; Chandler, C. L.; Cheatham, M.; Finin, T.; Hitzler, P.; Krisnadhi, A.; Raymond, L. M.; Shepherd, A.; Wiebe, P. H.

2014-12-01

A wide spectrum of maturing methods and tools, collectively characterized as the Semantic Web, is helping to vastly improve the dissemination of scientific research. Creating semantic integration requires input from both domain and cyberinfrastructure scientists. OceanLink, an NSF EarthCube Building Block, is demonstrating semantic technologies through the integration of geoscience data repositories, library holdings, conference abstracts, and funded research awards. Meeting project objectives involves applying semantic technologies to support data representation, discovery, sharing and integration. Our semantic cyberinfrastructure components include ontology design patterns, Linked Data collections, semantic provenance, and associated services to enhance data and knowledge discovery, interoperation, and integration. We discuss how these components are integrated, the continued automated and semi-automated creation of semantic metadata, and techniques we have developed to integrate ontologies, link resources, and preserve provenance and attribution.

Lessons from malaria control to help meet the rising challenge of dengue.

PubMed

Anders, Katherine L; Hay, Simon I

2012-12-01

Achievements in malaria control could inform efforts to control the increasing global burden of dengue. Better methods for quantifying dengue endemicity-equivalent to parasite prevalence surveys and endemicity mapping used for malaria-would help target resources, monitor progress, and advocate for investment in dengue prevention. Success in controlling malaria has been attributed to widespread implementation of interventions with proven efficacy. An improved evidence base is needed for large-scale delivery of existing and novel interventions for vector control, alongside continued investment in dengue drug and vaccine development. Control of dengue is unlikely to be achieved without coordinated international financial and technical support for national programmes, which has proven effective in reducing the global burden of malaria. Copyright © 2012 Elsevier Ltd. All rights reserved.

Enhanced Traceability for Bulk Processing of Sentinel-Derived Information Products

NASA Astrophysics Data System (ADS)

Lankester, Thomas; Hubbard, Steven; Knowelden, Richard

2016-08-01

The advent of widely available, systematically acquired and advanced Earth observations from the Sentinel platforms is spurring development of a wide range of derived information products. Whilst welcome, this rapid rate of development inevitably leads to some processing instability as algorithms and production steps are required to evolve accordingly. To mitigate this instability, the provenance of EO-derived information products needs to be traceable and transparent.Airbus Defence and Space (Airbus DS) has developed the Airbus Processing Cloud (APC) as a virtualised processing farm for bulk production of EO-derived data and information products. The production control system of the APC transforms internal configuration control information into an INSPIRE metadata file containing a stepwise set of processing steps and data source elements that provide the complete and transparent provenance of each product generated.

Citicoline – a neuroprotector with proven effects on glaucomatous disease

PubMed Central

Iulia, Chitu; Ruxandra, Tudosescu; Costin, Leasu-Branet; Liliana-Mary, Voinea

2017-01-01

Citicoline is the generic name of cytidine-5’-diphosphocholine (CDP-choline), an endogenous compound that is able to increase the levels of neurotransmitters in the central nervous system by interacting with the synthesis of cellular membranes phospholipids, especially phosphatidylcholine. Exogenous Citicoline, administered by ingestion or injection, is hydrolyzed and dephosphorylated in order to form cytidine and choline, which resynthesize CDP-choline inside brain cells. It has proven neuroprotective effects in Alzheimer disease, stroke, and Parkinson’s disease, as well as in glaucoma and amblyopia. Citicoline acts as a neuroprotector for those patients with progressive glaucomatous disease in spite of well-controlled intraocular pressure. The purpose of this review was to outline the main features of Citicoline and the evidences of its effect in glaucoma. PMID:29450391

Economics and siting of Fischer-Tropsch coal liquefaction

DOE Office of Scientific and Technical Information (OSTI.GOV)

Henry, J.P. Jr.; Ferreira, J.P.; Benefiel, J.

The capital intensity and low conversion efficiency of Fischer-Tropsch synthesis makes it noncompetitive with conventional petroleum in the midterm (e.g., 5 to 10 years) under normal economic conditions. However, if crude oil prices rise to higher levels (e.g., $25 to $30/bbl), coal liquefaction processes may prove to be economical. It appears that several other processes under development may become economically attractive before Fischer-Tropsch, although Fischer-Tropsch is the only proven commercially feasible venture at present. The above statement is subject, however, to the successful demonstration and commercialization of these alternative processes. Fischer-Tropsch, as a commercially proven process, may be called uponmore » as a backup should petroleum shortages ensue, world oil prices continue to increase dramatically, and alternate coal liquefaction processes fail to fully develop.« less

Application of Lightweight Formal Methods to Software Security

NASA Technical Reports Server (NTRS)

Gilliam, David P.; Powell, John D.; Bishop, Matt

2005-01-01

Formal specification and verification of security has proven a challenging task. There is no single method that has proven feasible. Instead, an integrated approach which combines several formal techniques can increase the confidence in the verification of software security properties. Such an approach which species security properties in a library that can be reused by 2 instruments and their methodologies developed for the National Aeronautics and Space Administration (NASA) at the Jet Propulsion Laboratory (JPL) are described herein The Flexible Modeling Framework (FMF) is a model based verijkation instrument that uses Promela and the SPIN model checker. The Property Based Tester (PBT) uses TASPEC and a Text Execution Monitor (TEM). They are used to reduce vulnerabilities and unwanted exposures in software during the development and maintenance life cycles.

Monitor weather conditions for cloud seeding control. [Colorado River Basin

NASA Technical Reports Server (NTRS)

Kahan, A. M. (Principal Investigator)

1973-01-01

The author has identified the following significant results. The near real-time DCS platform data transfer to the time-share compare is a working reality. Six stations are now being automatically monitored and displayed with a system delay of 3 to 8 hours from time of data transmission to time of data accessibility on the computer. The DCS platform system has proven itself a valuable tool for near real-time monitoring of mountain precipitation. Data from Wolf Creek Pass were an important input in making the decision when to suspend seeding operations to avoid exceeding suspension criteria in that area. The DCS platforms, as deployed in this investigation, have proven themselves to be reliable weather resistant systems for winter mountain environments in the southern Colorado mountains.

Evaluation of colonoscopic allergen provocation as a diagnostic tool in dogs with proven food hypersensitivity reactions.

PubMed

Allenspach, K; Vaden, S L; Harris, T S; Gröne, A; Doherr, M G; Griot-Wenk, M E; Bischoff, S C; Gaschen, F

2006-01-01

To evaluate the colonoscopic allergen provocation (COLAP) test as a new tool for the diagnosis of IgE-mediated food allergy. Oral food challenges as well as COLAP testing were performed in a colony of nine research dogs with proven immediate-type food allergic reactions. In addition, COLAP was performed in five healthy dogs. When compared with the oral challenge test, COLAP accurately determined 18 of 23 (73 per cent) positive oral challenge reactions (73 per cent) in dogs with food allergies and was negative in the healthy dogs. The accuracy of this new test may be higher than that for gastric sensitivity testing. Therefore, COLAP holds promise as a new test to confirm the diagnosis of suspect IgE-mediated food allergy in dogs.

Off-Policy Actor-Critic Structure for Optimal Control of Unknown Systems With Disturbances.

PubMed

Song, Ruizhuo; Lewis, Frank L; Wei, Qinglai; Zhang, Huaguang

2016-05-01

An optimal control method is developed for unknown continuous-time systems with unknown disturbances in this paper. The integral reinforcement learning (IRL) algorithm is presented to obtain the iterative control. Off-policy learning is used to allow the dynamics to be completely unknown. Neural networks are used to construct critic and action networks. It is shown that if there are unknown disturbances, off-policy IRL may not converge or may be biased. For reducing the influence of unknown disturbances, a disturbances compensation controller is added. It is proven that the weight errors are uniformly ultimately bounded based on Lyapunov techniques. Convergence of the Hamiltonian function is also proven. The simulation study demonstrates the effectiveness of the proposed optimal control method for unknown systems with disturbances.

Isotopic Ag–Cu–Pb record of silver circulation through 16th–18th century Spain

PubMed Central

Desaulty, Anne-Marie; Telouk, Philippe; Albalat, Emmanuelle; Albarède, Francis

2011-01-01

Estimating global fluxes of precious metals is key to understanding early monetary systems. This work adds silver (Ag) to the metals (Pb and Cu) used so far to trace the provenance of coinage through variations in isotopic abundances. Silver, copper, and lead isotopes were measured in 91 coins from the East Mediterranean Antiquity and Roman world, medieval western Europe, 16th–18th century Spain, Mexico, and the Andes and show a great potential for provenance studies. Pre-1492 European silver can be distinguished from Mexican and Andean metal. European silver dominated Spanish coinage until Philip III, but had, 80 y later after the reign of Philip V, been flushed from the monetary mass and replaced by Mexican silver. PMID:21606351

[Rehabilitation in rheumatology].

PubMed

Luttosch, F; Baerwald, C

2010-10-01

Rehabilitation in rheumatology focuses on prevention of functional disorders of the musculoskeletal system, maintenance of working ability and prevention of care dependency. Drug treatment alone rarely results in long-term remission, therefore rehabilitative measures must be integrated into rheumatic care. Rehabilitative therapy in rheumatology includes physiotherapy, patient education and occupational therapy. Positive effects of physical therapy methods have been proven by various studies. Patient education and occupational therapy are important tools for stabilizing the course of the disease. To maintain positive rehabilitative results patients have to be involved in the selection of treatment measures and should take an active part in the long-term treatment process. Despite proven efficacy of physical measures there is evidence for a lack of utilization of rehabilitative therapy due to increasing cost pressure in the health care system which will further increase over time.

The Contribution of Diabetes Education in the Treatment of People with Type 2 Diabetes and Risk of Cardiovascular Disease.

PubMed

Cavicchioli, M G S; Guerbali, C C L; Ochiai, C; Silva, R M; Camara, G; Petry, T B Z

2016-07-01

Diabetes has caused 5.1 million deaths, primarily from cardiovascular disease. Large clinical studies have proven the importance of intensive control of diabetes from diagnosis to prevent microvascular and macrovascular complications of the disease in the long term. Diabetes education conducted by an interdisciplinary team of doctors, nurses, nutritionists, psychologists, and others is a necessary tool to ensure effective behavioral change and help overcome the obstacles that may hinder self care. Several studies have been analyzed in this review, in which we find a variety of results. Diabetes education has proven to be essential to patient compliance with their T2DM treatment; the main objective is to prevent acute and chronic complications, especially cardiovascular ones, which are the main causes of mortality.

Character, paleoenvironment, rate of accumulation, and evidence for seismic triggering of Holocene turbidites, Canada Abyssal Plain, Arctic Ocean

USGS Publications Warehouse

Grantz, A.; Phillips, R.L.; Mullen, M.W.; Starratt, S.W.; Jones, Glenn A.; Naidu, A.S.; Finney, B.P.

1996-01-01

Four box cores and one piston core show that Holocene sedimentation on the southern Canada Abyssal Plain for the last 8010??120 yr has consisted of a continuing rain of pelagic organic and ice-rafted elastic sediment with a net accumulation rate during the late Holocene of ???10 mm/1000 yr, and episodically emplaced turbidites 1-5 m thick deposited at intervals of 830 to 3450 yr (average 2000 yr). The average net accumulation rate of the mixed sequence of turbidites and thin pelagite interbeds in the cores is about 1.2 m/1000 yr. Physiography suggests that the turbidites originated on the Mackenzie Delta or its clinoform, and ??13C values of -27 to - 25??? in the turbidites are compatible with a provenance on a delta. Extant displaced neritic and lower slope to basin plain calcareous benthic foraminifers coexist in the turbidite units. Their joint occurence indicates that the turbidites originated on the modern continental shelf and entrained sediment from the slope and rise enroute to their final resting place on the Canada Abyssal Plain. The presence of Middle Pleistocene diatoms in the turbidites suggests, in addition, that the turbidites may have originated in shallow submarine slides beneath the upper slope or outer shelf. Small but consistent differences in organic carbon content and ??13C values between the turbidite units suggest that they did not share an identical provenance, which is at least compatible with an origin in slope failures. The primary provenance of the ice-rafted component of the pelagic beds was the glaciated terrane of northwestern Canada; and the provenance of the turbidite units was Pleistocene and Holocene sedimentary deposits on the outer continental shelf and upper slope of the Mackenzie Delta. Largely local derivation of the sediment of the Canada Abyssal Plain indicates that sediment accumulation rates in the Arctic Ocean are valid only for regions with similar depositional sources and processes, and that these rates cannot be extrapolated regionally. The location of an elliptical zone of active seismicity over the inferred provenance of the turbidites suggests that they were triggered by large earthquakes. Distal turbidite sediment accumulation rates were more than two orders of magnitude greater than pelagic sediment accumulation rates on the Canada Abyssal Plain during the last 8000 years. This disparity reconciles the discrepancy between the high accumulation rates assumed by some for the Arctic Ocean because of the numerous major rivers and large ice sheets that discharge into this small mediterranean basin and the low pelagic sedimentation rates that have been reported from the Arctic Ocean.

The potential of beech seedlings to adapt to low P availability in soil - plant versus microbial effects on P mobilising potential in the rhizosphere

NASA Astrophysics Data System (ADS)

Meller, Sonia; Frey, Beat; Frossard, Emmanuel; Spohn, Marie; Schack-Kirchner, Helmer; Luster, Jörg

2016-04-01

The objective of our work was to investigate to what extent tree seedlings (Fagus sylvatica) are able to adapt the process of P mobilisation in the rhizosphere according to P speciation in the soil. Such mobilisation activity can include root exudation of P mobilising compounds or stimulation of specific P mobilising soil microbes. We hypothesized that Fagus sylvatica seedlings can adapt their own activity based on their P nutritional status and genetic memory of how to react under a given nutritional situation. To test the hypothesis, we set up a cross-growth experiment with beech of different provenances growing in soil from their own provenance site and in soil differing in P availability. Experiments were performed as a greenhouse experiment, with temperature control and natural light, during one vegetation period in rhizoboxes . We used two acidic forest soils, contrasting in P availability, collected at field sites of the German research priority program "Ecosystem Nutrition". Juvenile trees were collected along with the soils at the sites and planted respectively. The occurrence of P mobilising compounds and available P in the rhizosphere and in bulk soil were measured during the active growth season of the plants. In particular, we assessed phosphatase activity, (measured with zymography and plate enzymatic assay at pH 4,6.5, and 11) carboxylates and phosphate (measured by application of ion exchange membranes to specific soil micro zones, and by microdialysis), and pH (mapping with optodes). Plant P nutrition status was assessed by total P, N/P, phosphatase activity, and metabolic (TCA extractable) P in the leaves. The P-nutritional status of the beech provenances differed markedly independent from the P status of the soil where they were actually grown during experiment. In particular, the juvenile trees from the site rich in mineral P were sufficient in P, while those from the P-poor site with mostly organic P, were deficient. Enzymatic activity at the rhizoplane was mostly determined by the soil and was affected only to a small degree by plant provenance. On the other hand, plant provenance appeared to affect the occurrence of oxalate in the rhizosphere. The observed pH gradients near the root reflect the production of nitrate in the soil and the plant nitrate uptake. These results suggest, that the potential to hydrolyse organic P in the rhizosphere is mainly governed by the existing soil microbial community, while the plant itself actively influence the mobilisation of inorganic P by root exudation of carboxylates or possibly by stimulating the carboxylate exudation by specific microorganisms.

Professional Nursing Series by Videoconferencing.

ERIC Educational Resources Information Center

Weber, Jeanne Rodier; Lawlor, Andrew C.

1998-01-01

A university consortium developed a continuing-education series for rural Pennsylvania nurses using videoconferencing. The program was well received by participants and proven a viable method of delivery to isolated areas. (SK)

7 CFR 1709.111 - Limitations on use of grant funds.

Code of Federal Regulations, 2014 CFR

2014-01-01

... with a proven operating history, and for which there is an established industry for the design... utilizing experimental, developmental, or prototype technologies or technology demonstrations are not...

7 CFR 1709.111 - Limitations on use of grant funds.

Code of Federal Regulations, 2011 CFR

2011-01-01

... with a proven operating history, and for which there is an established industry for the design... utilizing experimental, developmental, or prototype technologies or technology demonstrations are not...

7 CFR 1709.111 - Limitations on use of grant funds.

Code of Federal Regulations, 2013 CFR

2013-01-01

... with a proven operating history, and for which there is an established industry for the design... utilizing experimental, developmental, or prototype technologies or technology demonstrations are not...

7 CFR 1709.111 - Limitations on use of grant funds.

Code of Federal Regulations, 2012 CFR

2012-01-01

... with a proven operating history, and for which there is an established industry for the design... utilizing experimental, developmental, or prototype technologies or technology demonstrations are not...

76 FR 52735 - Submission for OMB Review; Comment Request

Federal Register 2010, 2011, 2012, 2013, 2014

2011-08-23

...: 1513-0099. Type of Review: Extension without change of a currently approved collection. Title... not be reopened unless fraud or misrepresentation of material facts is proven. Respondents: Private...

78 FR 35290 - Government-Owned Inventions; Availability for Licensing

Federal Register 2010, 2011, 2012, 2013, 2014

2013-06-12

... tissues. NIH researchers have developed ELISA assays to quantify the amount of midkine and pleiotrophin...-available midkine or pleiotrophin antibodies. Assay relies on proven ELISA detection technology. Development...

The PDS4 Metadata Management System

NASA Astrophysics Data System (ADS)

Raugh, A. C.; Hughes, J. S.

2018-04-01

We present the key features of the Planetary Data System (PDS) PDS4 Information Model as an extendable metadata management system for planetary metadata related to data structure, analysis/interpretation, and provenance.

E-cigarette Use Triples Among Middle and High School Students in Just One Year

MedlinePlus

... achievable through regulation of the manufacturing, distribution, and marketing of tobacco products coupled with proven strategies. These strategies included funding tobacco control programs at ...

Cancer Detection and Diagnosis Methods - Annual Plan

Cancer.gov

Early cancer detection is a proven life-saving strategy. Learn about the research opportunities NCI supports, including liquid biopsies and other less-invasive methods, for detecting early cancers and precancerous growths.

Autonomous Science Operations Technologies for Deep Space Gateway

NASA Astrophysics Data System (ADS)

Barnes, P. K.; Haddock, A. T.; Cruzen, C. A.

2018-02-01

Autonomous Science Operations Technologies for Deep Space Gateway (DSG) is an overview of how the DSG would benefit from autonomous systems utilizing proven technologies performing telemetry monitoring and science operations.

Provenance of sands from the confluence of the Amazon and Madeira rivers based on detrital heavy minerals and luminescence of quartz and feldspar

NASA Astrophysics Data System (ADS)

do Nascimento, Daniel R.; Sawakuchi, André O.; Guedes, Carlos C. F.; Giannini, Paulo C. F.; Grohmann, Carlos H.; Ferreira, Manuela P.

2015-03-01

Source-to-sink systems are poorly known in tropical rivers. For the Amazonian rivers, the majority of the provenance studies remain focused on the suspended load, implying a poor understanding of the processes governing production and distribution of sands. In this study, we perform heavy mineral and optically stimulated luminescence (OSL) analysis to cover the entire spectrum (heavy and light minerals fraction) of 29 sand samples of the Lower Madeira river region (Amazon and Madeira rivers), of which the main goal was to find provenance indicators specific to these rivers. Despite the tropical humid climate, the sands of the Amazon and Lower Madeira rivers are rich in unstable heavy minerals as augite, hypersthene, green hornblende and andalusite. The Madeira river is highlighted by its higher content of andalusite, with source attributed to the Amazon Craton (medium-to-high grade metamorphic rocks), while the Amazon river, upstream of the Madeira river mouth, has a signature of augite and hypersthene, that suggests an Andean provenance (volcanic rocks). Sands from the Madeira river can be tracked in the Amazon river by the increasing concentration in andalusite. OSL analysis of the light minerals fraction was used as an index of feldspar concentration and sedimentary history of quartz grains. Lower feldspar concentration and quartz grains with longer sedimentary history (higher OSL sensitivity) also point to a major contribution of cratonic sources for the sands in the Madeira river. While the sands from the Lower Madeira would be mainly supplied by cratonic rocks, previous work recognised that suspended sediments (silt and clay) are derived from Andean rocks. Therefore, we interpret a decoupling between the sources of sand and mud (silt and clay) under transport in the Madeira river. Andean sands (rich in augite and hypersthene) would be trapped in the foreland zones of the Beni and Mamoré tributaries. In the Amazon river sands, the low OSL sensitivity of the quartz, higher content of feldspar and unstable heavy mineral assemblage dominated by augite and hypersthene suggest both a fast transport from Andean sources with fine sediment bypass over foreland areas.

Clay mineralogy indicates the muddy sediment provenance in the estuarine-inner shelf of the East China Sea

NASA Astrophysics Data System (ADS)

Zhao, Yifei; Zou, Xinqing; Liu, Qing; Wang, Chenglong; Ge, Chendong; Xu, Min

2018-02-01

The estuarine-inner shelf mud regions of the East China Sea (ECS) are valuable for studying the source-to-sink processes of fluvial sediments deposited since the Holocene. In this study, we present evidence of the provenance and environmental evolution of two cores (S5-2 and JC07) from the estuarine-inner shelf regions of the ECS over the past 100 years based on 210Pb dating, high-resolution grain size measurements and clay mineral analyses. The results indicate that the clay mineral assemblages of cores S5-2 and JC07 are dominated by illite, followed by kaolinite and chlorite, and present scarce amounts of smectite. A comparison of these clay mineral assemblages with several major sources reveals that the fine sediments on the estuarine-inner shelf of the ECS represent a mixture of provenances associated with the Yangtze and Yellow Rivers, as well as smaller rivers. However, the contribution of each provenance has varied greatly over the past hundred years, as indicated by the down-core variability due to strong sediment reworking and transport on the inner shelf and the reduction of the sediment load from the Yangtze River basin. In the mud region of the Yangtze River estuary, the sediment from 1930 to 1956 was primarily derived from the Yangtze River, although the Yellow River was also an important influence. From 1956 to 2013, the Yellow River contribution decreased, whereas the Yangtze River contribution correspondingly increased. In the Zhe-Min mud region, the Yangtze River contributed more sediment than did other rivers from 1910 to 1950; however, the Yangtze River contribution gradually decreased from 1950 to 2013. Moreover, the other small rivers accounted for minor contributions, and the East Asian winter monsoon (EAWM) played an important role in the sediment transport process in the ECS. Our results indicate that the weakening/strengthening of the EAWM and a decrease in the sediment load of the Yangtze River influenced the transport and fate of sediment on the estuarine-inner shelf of the ECS.

Paleocene Turbidite Deposition in the Central American Seaway (NW Costa Rica): Geochemical Analysis and Provenance of Detrital Spinel and Clinopyroxene

NASA Astrophysics Data System (ADS)

Giblin, A. C.

2015-12-01

The Central American Land Bridge is the crucial connection between North and South America, and the Miocene closure of the Panama seaway led to a change in global oceanic circulation patterns. Modern Costa Rica is part of the island arc that formed over the western Caribbean subduction zone, and the Santa Elena peninsula is on the northwest coast of Costa Rica next to the Sandino forearc basin. This study focuses on the origin and provenance of the Paleocene deep-water Rivas and Descartes turbidites that crop out on the northern part of the Santa Elena peninsula in northwestern Costa Rica. Understanding the sedimentary fill of the Sandino Basin that contributed to the closing of the seaway may lead to a better understanding of the Late Cretaceous-Paleogene arcs. Provenance studies of the Santa Elena Peninsula turbidite sandstone bodies constrain the history of the paleogeography and tectonics of the region. Petrographic analyses of rock thin sections constrain source areas; geochemical analysis of individual detrital heavy minerals from rock samples give indications of sediment sources and tectonic setting during deposition. This study is a provenance analysis based on (i) semi-quantitative energy-dispersive spectrometry analysis of heavy minerals, (ii) quantitative wavelength-dispersive spectrometry for major elements of detrital clinopyroxene and spinel grains, (iii) trace element analysis through laser ablation of single detrital clinopyroxene grains, and (iv) comparative analysis of the different potential source rocks to clearly identify the most likely sediment sources. The detrital spinel and clinopyroxene are possibly sourced from: mantle ophiolites, mid-ocean ridge gabbros, or volcanic arc tholeiitic basalts or calc-alkaline andesites. Spinel and clinopyroxne geochemistry suggests a possible peridotitic source, linked to mantle rocks that are now covered by Tertiary volcanics or have completely eroded. The character of the crustal minerals indicates sources from mid-ocean ridge gabbros, and island arc tholeiites and andesites. This suggests that during the early history of the gateway uplift and seaway closure, sediment sources were dominated first by older ophiolites and gabbroic sources, then by volcanic inputs from the arc.

Resource diversity and provenance underpin spatial patterns in functional diversity across native and exotic species.

PubMed

Méndez, Verónica; Wood, Jamie R; Butler, Simon J

2018-05-01

Functional diversity metrics are increasingly used to augment or replace taxonomic diversity metrics to deliver more mechanistic insights into community structure and function. Metrics used to describe landscape structure and characteristics share many of the same limitations as taxonomy-based metrics, particularly their reliance on anthropogenically defined typologies with little consideration of structure, management, or function. However, the development of alternative metrics to describe landscape characteristics has been limited. Here, we extend the functional diversity framework to characterize landscapes based on the diversity of resources available across habitats present. We then examine the influence of resource diversity and provenance on the functional diversities of native and exotic avian communities in New Zealand. Invasive species are increasingly prevalent and considered a global threat to ecosystem function, but the characteristics of and interactions between sympatric native and exotic communities remain unresolved. Understanding their comparative responses to environmental change and the mechanisms underpinning them is of growing importance in predicting community dynamics and changing ecosystem function. We use (i) matrices of resource use (species) and resource availability (habitats) and (ii) occurrence data for 62 native and 25 exotic species and 19 native and 13 exotic habitats in 2015 10 × 10 km quadrats to examine the relationship between native and exotic avian and landscape functional diversity. The numbers of species in, and functional diversities of, native and exotic communities were positively related. Each community displayed evidence of environmental filtering, but it was significantly stronger for exotic species. Less environmental filtering occurred in landscapes providing a more diverse combination of resources, with resource provenance also an influential factor. Landscape functional diversity explained a greater proportion of variance in native and exotic community characteristics than the number of habitat types present. Resource diversity and provenance should be explicitly accounted for when characterizing landscape structure and change as they offer additional mechanistic understanding of the links between environmental filtering and community structure. Manipulating resource diversity through the design and implementation of management actions could prove a powerful tool for the delivery of conservation objectives, be they to protect native species, control exotic species, or maintain ecosystem service provision.

Linkages between orogenic plateau build-up, fold-thrust shortening, and foreland basin evolution in the Zagros (NW Iran)

NASA Astrophysics Data System (ADS)

Barber, D. E.; Stockli, D. F.

2017-12-01

The Iranian Plateau (IP) is a thickened, low-relief morphotectonic province of diffuse deformation that formed due to Arabia-Eurasia collision and may serve as a younger analogue for the Tibetan Plateau. Despite detailed geophysical characterization of the IP, its deformation history and relationship to the Zagros fold-thrust belt and its foreland basin evolution remains unresolved. Low-temperature thermochronometry and provenance data from a transect across the internal and external Zagros track growth of the IP and delineate multiphase interaction between upper- and lower-plate processes during closure of the Neotethys and Arabia-Eurasia suturing. Inversion of zircon (U-Th)/He and fission-track data from plutonic and metamorphic basement rocks in the Sanandaj-Sirjan Zone (SSZ) of the IP reveals an initial stage of low-rate exhumation from 36-25 Ma, simultaneous with the onset of tectonic subsidence and marine incursion in the Zagros foreland basin. Overlapping apatite fission-track and (U-Th)/He ages indicate sharp acceleration in SSZ exhumation rates between 20-15 Ma, coincident with rejuvenation of foreland basin subsidence and an influx of Eurasian-derived sediments into the Zagros foreland deposited above an Oligocene unconformity. The mid-Miocene marks a transition in focused exhumation from the SSZ to Arabian lower-plate. Apatite (U-Th)/He ages suggest in-sequence fold-thrust propagation from the High Zagros to simply folded belt from 10 Ma to recent, which is reflected in the foreland by a shift in provenance to dominantly recycled Arabian-derived detritus and clastic facies progradation. Integrated thermochronometric and provenance data document a two-phase outward expansion of the Iranian Plateau and Zagros fold-thrust belt, tightly coupled to distinct phases of basin evolution and provenance shifts in the Zagros foreland. We associate multiple deformation and basin episodes with protracted collisional processes, from subduction of attenuated Arabian transitional crust beneath Eurasia causing low-rate upper-plate exhumation in the late Eocene, to accelerated Miocene unroofing and basin flexure linked to increased plate coupling and eventual to suturing as buoyant Arabian continental lithosphere entered the subduction interface.

Epidemic microclusters of blood-culture proven sepsis in very-low-birth weight infants: experience of the German Neonatal Network.

PubMed

Härtel, Christoph; Faust, Kirstin; Avenarius, Stefan; Bohnhorst, Bettina; Emeis, Michael; Gebauer, Corinna; Groneck, Peter; Heitmann, Friedhelm; Hoehn, Thomas; Hubert, Mechthild; Kribs, Angela; Küster, Helmut; Laux, Reinhard; Mögel, Michael; Müller, Dirk; Olbertz, Dirk; Roll, Claudia; Siegel, Jens; Stein, Anja; Vochem, Matthias; Weller, Ursula; von der Wense, Axel; Wieg, Christian; Wintgens, Jürgen; Hemmelmann, Claudia; Simon, Arne; Herting, Egbert; Göpel, Wolfgang

2012-01-01

We evaluated blood culture-proven sepsis episodes occurring in microclusters in very-low-birth-weight infants born in the German Neonatal Network (GNN) during 2009-2010. Thirty-seven centers participated in GNN; 23 centers enrolled ≥50 VLBW infants in the study period. Data quality was approved by on-site monitoring. Microclusters of sepsis were defined as occurrence of at least two blood-culture proven sepsis events in different patients of one center within 3 months with the same bacterial species. For microcluster analysis, we selected sepsis episodes with typically cross-transmitted bacteria of high clinical significance including gram-negative rods and Enterococcus spp. In our cohort, 12/2110 (0.6%) infants were documented with an early-onset sepsis and 235 late-onset sepsis episodes (≥72 h of age) occurred in 203/2110 (9.6%) VLBW infants. In 182/235 (77.4%) late-onset sepsis episodes gram-positive bacteria were documented, while coagulase negative staphylococci were found to be the most predominant pathogens (48.5%, 95%CI: 42.01-55.01). Candida spp. and gram-negative bacilli caused 10/235 (4.3%, 95%CI: 1.68% -6.83%) and 43/235 (18.5%) late-onset sepsis episodes, respectively. Eleven microclusters of blood-culture proven sepsis were detected in 7 hospitals involving a total 26 infants. 16/26 cluster patients suffered from Klebsiella spp. sepsis. The median time interval between the first patient's Klebsiella spp. sepsis and cluster cases was 14.1 days (interquartile range: 1-27 days). First patients in the cluster, their linked cases and sporadic sepsis events did not show significant differences in short term outcome parameters. Microclusters of infection are an important phenomenon for late-onset sepsis. Most gram-negative cluster infections occur within 30 days after the first patient was diagnosed and Klebsiella spp. play a major role. It is essential to monitor epidemic microclusters of sepsis in surveillance networks to adapt clinical practice, inform policy and further improve quality of care.

Discriminating Sediment Supply versus Accommodation Controls on Late Cretaceous Foreland Basin Stratigraphic Architecture in the Book Cliffs, Utah using Detrital Zircon Double Dating

NASA Astrophysics Data System (ADS)

Bartschi, N.; Saylor, J. E.

2016-12-01

Middle to late Campanian strata of the Book Cliffs, Utah record the Late Cretaceous deposition of three clastic wedges in the North American Cordilleran foreland basin east of the Sevier thrust-belt. Variations in wedge geometries provide an opportunity to evaluate the effects of sediment supply versus accommodation on foreland basin stratal architecture. There is a significant increase in eastward progradation rate from the Lower to the Upper Castlegate Sandstone. However, the progradation rate decreases in the overlying Bluecastle and Price River formations, as well as the laterally equivalent Farrer and Tuscher formations. Rapid progradation during Upper Castlegate deposition may be caused by increased sediment supply from either rapid exhumation of the Sevier thrust-belt or introduction of a new sediment source. Alternatively, reduced accommodation within the proximal foreland basin from uplifts associated with Laramide deformation, or a transition from flexural to dynamic subsidence, could produce the observed rapid wedge progradation. Changes in sediment provenance and source-area exhumation rate can be identified using a combination of detrital zircon U-Pb geochronology and (U-Th)/He thermochronology. Quantitative comparisons between collected samples and published provenance data indicates an upsection increase in a new sediment source, revealing a significant overall shift in provenance between wedge boundaries. This change in provenance is coupled by an upsection decrease in lag time between the Lower and Upper Castlegate, consistent with an increase in exhumation rate. Conversely, there is no change in lag time between the Upper Castlegate and overlying Price River Formation, suggesting a relatively constant exhumation rate. Near-zero lag times during the Upper Castlegate is consistent with rapid exhumation associated with increased thrusting of the Sevier thrust-belt. Therefore, progradation of the Upper Castlegate can be attributed to an increase in sediment supply due to both rapid exhumation of the Sevier thrust-belt and introduction of a new sediment source. However, the data do not rule out the potential influence of reduced accommodation associated with early Laramide deformation during Upper Castlegate deposition.

Educational and Scientific Applications of Climate Model Diagnostic Analyzer

NASA Astrophysics Data System (ADS)

Lee, S.; Pan, L.; Zhai, C.; Tang, B.; Kubar, T. L.; Zhang, J.; Bao, Q.

2016-12-01

Climate Model Diagnostic Analyzer (CMDA) is a web-based information system designed for the climate modeling and model analysis community to analyze climate data from models and observations. CMDA provides tools to diagnostically analyze climate data for model validation and improvement, and to systematically manage analysis provenance for sharing results with other investigators. CMDA utilizes cloud computing resources, multi-threading computing, machine-learning algorithms, web service technologies, and provenance-supporting technologies to address technical challenges that the Earth science modeling and model analysis community faces in evaluating and diagnosing climate models. As CMDA infrastructure and technology have matured, we have developed the educational and scientific applications of CMDA. Educationally, CMDA supported the summer school of the JPL Center for Climate Sciences for three years since 2014. In the summer school, the students work on group research projects where CMDA provide datasets and analysis tools. Each student is assigned to a virtual machine with CMDA installed in Amazon Web Services. A provenance management system for CMDA is developed to keep track of students' usages of CMDA, and to recommend datasets and analysis tools for their research topic. The provenance system also allows students to revisit their analysis results and share them with their group. Scientifically, we have developed several science use cases of CMDA covering various topics, datasets, and analysis types. Each use case developed is described and listed in terms of a scientific goal, datasets used, the analysis tools used, scientific results discovered from the use case, an analysis result such as output plots and data files, and a link to the exact analysis service call with all the input arguments filled. For example, one science use case is the evaluation of NCAR CAM5 model with MODIS total cloud fraction. The analysis service used is Difference Plot Service of Two Variables, and the datasets used are NCAR CAM total cloud fraction and MODIS total cloud fraction. The scientific highlight of the use case is that the CAM5 model overall does a fairly decent job at simulating total cloud cover, though simulates too few clouds especially near and offshore of the eastern ocean basins where low clouds are dominant.

Can cathodoluminescence of feldspar be used as provenance indicator?

NASA Astrophysics Data System (ADS)

Scholonek, Christiane; Augustsson, Carita

2016-05-01

We have studied feldspar from crystalline rocks for its textural and spectral cathodoluminescence (CL) characteristics with the aim to reveal their provenance potential. We analyzed ca. 60 rock samples of plutonic, volcanic, metamorphic, and pegmatitic origin from different continents and of 16 Ma to 2 Ga age for their feldspar CL textures and ca. 1200 feldspar crystals from these rocks for their CL color spectra. Among the analyzed rocks, igneous feldspar is most commonly zoned, whereby oscillatory zoning can be confirmed to be typical for volcanic plagioclase. The volcanic plagioclase also less commonly contains twin lamellae that are visible in CL light than crystals from other rock types. Alkali feldspar, particularly from igneous and pegmatitic rocks, was noted to be most affected by alteration features, visible as dark spots, lines and irregular areas. The size of all textural features of up to ca. 150 μm, in combination with possible alteration in both the source area and the sedimentary system, makes the CL textures of feldspar possible to use for qualitative provenance research only. We observed alkali feldspar mostly to luminesce in a bluish color and sometimes in red, and plagioclase in green to yellow. The corresponding CL spectra are dominated by three apparent intensity peaks at 440-520 nm (mainly blue), 540-620 nm (mainly green) and 680-740 nm (red to infrared). A dominance of the peak in the green wavelength interval over the blue one for plagioclase makes CL particularly useful for the differentiation of plagioclase from alkali feldspar. An apparent peak position in red to infrared at < 710 nm for plagioclase mainly is present in mafic rocks. Present-day coastal sand from Peru containing feldspar with the red to infrared peak position mainly exceeding 725 nm for northern Peruvian sand and a larger variety for sand from southern Peru illustrates a discriminative effect of different source areas. We conclude that the provenance application particularly can reveal first-cycle input from mafic rocks and source variations for detritus from arid areas that has been affected by little feldspar alteration.

Detrital thermochronology of Rhine, Elbe and Meuse river sediment (Central Europe): implications for provenance, erosion and mineral fertility

NASA Astrophysics Data System (ADS)

Glotzbach, C.; Busschers, F. S.; Winsemann, J.

2018-03-01

Here we present detrital apatite fission track (AFT), zircon fission track (ZFT) and a few apatite (U-Th)/He (AHe) data of Middle Pleistocene to modern Rhine, Meuse and Elbe river sediments in order to resolve processes that control detrital age distributions (provenance, erosion and mineral fertility). We used a modelling approach to compare observed with theoretically predicted age distributions from an interpolated in situ AFT and ZFT age map. In situ cooling ages do show large differences in the Rhine drainage basin, facilitating the differentiation between different source regions. Inconsistencies between observed and theoretical age distributions of the Meuse and Elbe samples can be explained by mixing and reworking of sediments with different provenances (Meuse Middle Pleistocene terrace sediment) and a yet unexplored source region with old AFT ages (Elbe samples). Overall, the results show that detrital thermochronology is capable of identifying the provenance of Middle Pleistocene to modern sediments. The AFT age distributions of Rhine sediments are dominated ( 70%) by AFT ages representing the Alps. A possible explanation is higher erosion rates in the Alps as compared to areas outside the Alps. A Late Pleistocene sample from the Upper Rhine Graben contains apatite grains from the Molasse and Hegau volcanics, which we explain with a shift of the headwaters of the Rhine to the north as a result of intense Middle Pleistocene Riss glaciation. Contrary to the observed dominance of Alpine-derived AFT ages in Rhine sediments, the relative contribution of zircon ages with sources in the Alps is lower and significantly decreases downstream, suggesting a major source of zircons outside the Alps. This can be explained by increased zircon fertility of sediments derived from the Rhenish massif. Therefore, we conclude that erosion and mineral fertility are the main processes controlling detrital AFT and ZFT age distributions of the sampled river sediment. In case of the Rhine samples, AFT age distributions are mainly controlled by differences in erosion rates, whereas this impact is completely balanced by differences in mineral fertility for the ZFT data.

Carcinosarcoma of the Urinary Bladder: A Case Report

PubMed Central

Gupta, Limci; Elder, Jacqueline

2005-01-01

Carcinosarcomas are rare tumours containing both malignant mesenchymal and epithelial elements. This reports presents a 70-year-old man with carcinosarcoma of the urinary bladder, which is proven histologically. PMID:15962192

Mumps

MedlinePlus

... been raised about a connection between the MMR vaccine and autism, extensive reports from the American Academy of Pediatrics, ... there's no scientifically proven link between the MMR vaccine and autism. By Mayo Clinic Staff . Mayo Clinic Footer Legal ...

How to Spot Health Fraud

MedlinePlus

... Time-Tested or New-Found Treatment "This revolutionary innovation is formulated by using proven principles of natural ... and a decades-old remedy. Claims of an "innovation," "miracle cure," "exclusive product," or "new discovery" or " ...

Intravenous azithromycin as salvage therapy in a patient with Legionnaire's disease

PubMed Central

Dorrell, L; Fulton, B; Ong, E L C

1994-01-01

A patient with proven Legionnaire's disease is described whose clinical condition improved with intravenous azithromycin after failure to respond to treatment with erythromycin and rifampicin. Images PMID:8016806