Statistical Analysis of Atmospheric Forecast Model Accuracy - A Focus on Multiple Atmospheric Variables and Location-Based Analysis

DTIC Science & Technology

2014-04-01

WRF ) model is a numerical weather prediction system designed for operational forecasting and atmospheric research. This report examined WRF model... WRF , weather research and forecasting, atmospheric effects 16. SECURITY CLASSIFICATION OF: 17. LIMITATION OF ABSTRACT SAR 18. NUMBER OF...and Forecasting ( WRF ) model. The authors would also like to thank Ms. Sherry Larson, STS Systems Integration, LLC, ARL Technical Publishing Branch

A new numerical formulation of gas leakage and spread into a residential space in terms of hazard analysis.

PubMed

Nagaosa, Ryuichi S

2014-04-30

This study proposes a new numerical formulation of the spread of a flammable gas leakage. A new numerical approach has been applied to establish fundamental data for a hazard assessment of flammable gas spread in an enclosed residential space. The approach employs an extended version of a two-compartment concept, and determines the leakage concentration of gas using a mass-balance based formulation. The study also introduces a computational fluid dynamics (CFD) technique for calculating three-dimensional details of the gas spread by resolving all the essential scales of fluid motions without a turbulent model. The present numerical technique promises numerical solutions with fewer uncertainties produced by the model equations while maintaining high accuracy. The study examines the effect of gas density on the concentration profiles of flammable gas spread. It also discusses the effect of gas leakage rate on gas concentration profiles. Copyright © 2014 The Authors. Published by Elsevier B.V. All rights reserved.

User's Manual for Downscaler Fusion Software

EPA Science Inventory

Recently, a series of 3 papers has been published in the statistical literature that details the use of downscaling to obtain more accurate and precise predictions of air pollution across the conterminous U.S. This downscaling approach combines CMAQ gridded numerical model output...

Analytical and numerical analyses of an unconfined aquifer test considering unsaturated zone characteristics

USGS Publications Warehouse

Moench, A.F.

2008-01-01

A 7-d, constant rate aquifer test conducted by University of Waterloo researchers at Canadian Forces Base Borden in Ontario, Canada, is useful for advancing understanding of fluid flow processes in response to pumping from an unconfined aquifer. Measured data include not only drawdown in the saturated zone but also volumetric soil moisture measured at various times and distances from the pumped well. Analytical analyses were conducted with the model published in 2001 by Moench and colleagues, which allows for gradual drainage but does not include unsaturated zone characteristics, and the model published in 2006 by Mathias and Butler, which assumes that moisture retention and relative hydraulic conductivity (RHC) in the unsaturated zone are exponential functions of pressure head. Parameters estimated with either model yield good matches between measured and simulated drawdowns in piezometers. Numerical analyses were conducted with two versions of VS2DT: one that uses traditional Brooks and Corey functional relations and one that uses a RHC function introduced in 2001 by Assouline that includes an additional parameter that accounts for soil structure and texture. The analytical model of Mathias and Butler and numerical model of VS2DT with the Assouline model both show that the RHC function must contain a fitting parameter that is different from that used in the moisture retention function. Results show the influence of field-scale heterogeneity and suggest that the RHC at the Borden site declines more rapidly with elevation above the top of the capillary fringe than would be expected if the parameters were to reflect local- or core-scale soil structure and texture.

Extension and Validation of a Hybrid Particle-Finite Element Method for Hypervelocity Impact Simulation. Chapter 2

NASA Technical Reports Server (NTRS)

Fahrenthold, Eric P.; Shivarama, Ravishankar

2004-01-01

The hybrid particle-finite element method of Fahrenthold and Horban, developed for the simulation of hypervelocity impact problems, has been extended to include new formulations of the particle-element kinematics, additional constitutive models, and an improved numerical implementation. The extended formulation has been validated in three dimensional simulations of published impact experiments. The test cases demonstrate good agreement with experiment, good parallel speedup, and numerical convergence of the simulation results.

Discussion: Numerical study on the entrainment of bed material into rapid landslides

USGS Publications Warehouse

Iverson, Richard M.

2013-01-01

A paper recently published in this journal (Pirulli & Pastor, 2012) uses numerical modelling to study the important problem of entrainment of bed material by landslides. Unfortunately, some of the basic equations employed in the study are flawed, because they violate the principle of linear momentum conservation. Similar errors exist in some other studies of entrainment, and the errors appear to stem from confusion about the role of bed-sediment inertia in differing frames of reference.

Adaptive MPC based on MIMO ARX-Laguerre model.

PubMed

Ben Abdelwahed, Imen; Mbarek, Abdelkader; Bouzrara, Kais

2017-03-01

This paper proposes a method for synthesizing an adaptive predictive controller using a reduced complexity model. This latter is given by the projection of the ARX model on Laguerre bases. The resulting model is entitled MIMO ARX-Laguerre and it is characterized by an easy recursive representation. The adaptive predictive control law is computed based on multi-step-ahead finite-element predictors, identified directly from experimental input/output data. The model is tuned in each iteration by an online identification algorithms of both model parameters and Laguerre poles. The proposed approach avoids time consuming numerical optimization algorithms associated with most common linear predictive control strategies, which makes it suitable for real-time implementation. The method is used to synthesize and test in numerical simulations adaptive predictive controllers for the CSTR process benchmark. Copyright © 2016 ISA. Published by Elsevier Ltd. All rights reserved.

Monitoring red tide with satellite imagery and numerical models: a case study in the Arabian Gulf.

PubMed

Zhao, Jun; Ghedira, Hosni

2014-02-15

A red tide event that occurred in August 2008 in the Arabian Gulf was monitored and assessed using satellite observations and numerical models. Satellite observations revealed the bloom extent and evolution from August 2008 to August 2009. Flow patterns of the bloom patch were confirmed by results from a HYCOM model. HYCOM data and satellite-derived sea surface temperature data further suggested that the bloom could have been initiated offshore and advected onshore by bottom Ekman layer. Analysis indicated that nutrient sources supporting the bloom included upwelling, Trichodesmium, and dust deposition while other potential sources of nutrient supply should also be considered. In order to monitor and detect red tide effectively and provide insights into its initiation and maintenance mechanisms, the integration of multiple platforms is required. The case study presented here demonstrated the benefit of combing satellite observations and numerical models for studying red tide outbreaks and dynamics. Copyright © 2014 The Authors. Published by Elsevier Ltd.. All rights reserved.

Yi Guo | NREL

Science.gov Websites

Yi is dedicated to research and development in dynamic modeling, reliability analysis, vibro systems and has published numerous impactful journal publications. Prior to NREL, she pursued her Ph.D . research at Ohio State University with specialization in dynamics, vibration, and acoustics of wind turbine

An efficient soil water balance model based on hybrid numerical and statistical methods

NASA Astrophysics Data System (ADS)

Mao, Wei; Yang, Jinzhong; Zhu, Yan; Ye, Ming; Liu, Zhao; Wu, Jingwei

2018-04-01

Most soil water balance models only consider downward soil water movement driven by gravitational potential, and thus cannot simulate upward soil water movement driven by evapotranspiration especially in agricultural areas. In addition, the models cannot be used for simulating soil water movement in heterogeneous soils, and usually require many empirical parameters. To resolve these problems, this study derives a new one-dimensional water balance model for simulating both downward and upward soil water movement in heterogeneous unsaturated zones. The new model is based on a hybrid of numerical and statistical methods, and only requires four physical parameters. The model uses three governing equations to consider three terms that impact soil water movement, including the advective term driven by gravitational potential, the source/sink term driven by external forces (e.g., evapotranspiration), and the diffusive term driven by matric potential. The three governing equations are solved separately by using the hybrid numerical and statistical methods (e.g., linear regression method) that consider soil heterogeneity. The four soil hydraulic parameters required by the new models are as follows: saturated hydraulic conductivity, saturated water content, field capacity, and residual water content. The strength and weakness of the new model are evaluated by using two published studies, three hypothetical examples and a real-world application. The evaluation is performed by comparing the simulation results of the new model with corresponding results presented in the published studies, obtained using HYDRUS-1D and observation data. The evaluation indicates that the new model is accurate and efficient for simulating upward soil water flow in heterogeneous soils with complex boundary conditions. The new model is used for evaluating different drainage functions, and the square drainage function and the power drainage function are recommended. Computational efficiency of the new model makes it particularly suitable for large-scale simulation of soil water movement, because the new model can be used with coarse discretization in space and time.

Modelling of thermal stresses in bearing steel structure generated by electrical current impulses

NASA Astrophysics Data System (ADS)

Birjukovs, M.; Jakovics, A.; Holweger, W.

2018-05-01

This work is the study of one particular candidate for white etching crack (WEC) initiation mechanism in wind turbine gearbox bearings: discharge current impulses flowing through bearing steel with associated thermal stresses and material fatigue. Using data/results from previously published works, the authors develop a series of models that are utilized to simulate these processes under various conditions/local microstructure configurations, as well as to verify the results of the previous numerical studies. Presented models show that the resulting stresses are several orders of magnitude below the fatigue limit/yield strength for the parameters used herein. Results and analysis of models provided by Scepanskis, M. et al. also indicate that certain effects predicted in their previous work resulted from a physically unfounded assumption about material thermodynamic properties and numerical model implementation issues.

Experimental and Numerical Analysis of Narrowband Coherent Rayleigh-Brillouin Scattering in Atomic and Molecular Species (Pre Print)

DTIC Science & Technology

2012-02-01

use of polar gas species. While current simplified models have adequately predicted CRS and CRBS line shapes for a wide variety of cases, multiple ...published simplified models are presented for argon, molecular nitrogen, and methane at 300 & 500 K and 1 atm. The simplified models require uncertain gas... models are presented for argon, molecular nitrogen, and methane at 300 & 500 K and 1 atm. The simplified models require uncertain gas properties

Open Access, data capitalism and academic publishing.

PubMed

Hagner, Michael

2018-02-16

Open Access (OA) is widely considered a breakthrough in the history of academic publishing, rendering the knowledge produced by the worldwide scientific community accessible to all. In numerous countries, national governments, funding institutions and research organisations have undertaken enormous efforts to establish OA as the new publishing standard. The benefits and new perspectives, however, cause various challenges. This essay addresses several issues, including that OA is deeply embedded in the logic and practices of data capitalism. Given that OA has proven an attractive business model for commercial publishers, the key predictions of OA-advocates, namely that OA would liberate both scientists and tax payers from the chains of global publishing companies, have not become true. In its conclusion, the paper discusses the opportunities and pitfalls of non-commercial publishing.

Numerical Modeling of the Work Piece Region in the Plasma Arc Cutting Process

NASA Astrophysics Data System (ADS)

Osterhouse, David

The plasma arc cutting process is widely used for the cutting of metals. The process, however, is not fully understood and further understanding will lead to further improvements. This work aims to elucidate the fundamental physical phenomena in the region where the plasma interacts with the work piece through the use of numerical modeling techniques. This model follows standard computational fluid dynamic methods that have been suitably modified to include plasma effects, assuming either local thermodynamic equilibrium or a slight non-equilibrium captured by the two-temperature assumption. This is implemented in the general purpose, open source CFD package, OpenFOAM. The model is applied to a plasma flow through a geometry that extends from inside the plasma torch to the bottom of the slot cut in the work piece. The shape of the kerf is taken from experimental measurements. The results of this model include the temperature, velocity, and electrical current distribution throughout the plasma. From this, the heat flux to and drag force on the work piece are calculated. The location of the arc attachment in the cut slot is also noted because it is a matter of interest in the published literature as well as significantly effecting the dynamics of the heat flux and drag force. The results of this model show that the LTE formulation is not sufficient to capture the physics present due to unphysical fluid dynamic instabilities and numerical problems with the arc attachment. The two-temperature formulation, however, captures a large part of the physics present. Of particular note, it is found that an additional inelastic collision factor is necessary to describe the increased energy transfer between electrons and diatomic molecules, which is widely neglected in published literature. It is also found that inclusion of the oxygen molecular ion is necessary to accurately describe the plasma flow, which has been neglected in all published two-temperature oxygen calculations. The heat flux is found to be greatest at the top of the cut slot where the thermal boundary layer is thinnest and the arc attachment increases heat transfer.

An innovative hybrid 3D analytic-numerical model for air breathing parallel channel counter-flow PEM fuel cells.

PubMed

Tavčar, Gregor; Katrašnik, Tomaž

2014-01-01

The parallel straight channel PEM fuel cell model presented in this paper extends the innovative hybrid 3D analytic-numerical (HAN) approach previously published by the authors with capabilities to address ternary diffusion systems and counter-flow configurations. The model's core principle is modelling species transport by obtaining a 2D analytic solution for species concentration distribution in the plane perpendicular to the cannel gas-flow and coupling consecutive 2D solutions by means of a 1D numerical pipe-flow model. Electrochemical and other nonlinear phenomena are coupled to the species transport by a routine that uses derivative approximation with prediction-iteration. The latter is also the core of the counter-flow computation algorithm. A HAN model of a laboratory test fuel cell is presented and evaluated against a professional 3D CFD simulation tool showing very good agreement between results of the presented model and those of the CFD simulation. Furthermore, high accuracy results are achieved at moderate computational times, which is owed to the semi-analytic nature and to the efficient computational coupling of electrochemical kinetics and species transport.

Three-dimensional hydrogeologic framework model of the Rio Grande transboundary region of New Mexico and Texas, USA, and northern Chihuahua, Mexico

USGS Publications Warehouse

Sweetkind, Donald S.

2017-09-08

As part of a U.S. Geological Survey study in cooperation with the Bureau of Reclamation, a digital three-dimensional hydrogeologic framework model was constructed for the Rio Grande transboundary region of New Mexico and Texas, USA, and northern Chihuahua, Mexico. This model was constructed to define the aquifer system geometry and subsurface lithologic characteristics and distribution for use in a regional numerical hydrologic model. The model includes five hydrostratigraphic units: river channel alluvium, three informal subdivisions of Santa Fe Group basin fill, and an undivided pre-Santa Fe Group bedrock unit. Model input data were compiled from published cross sections, well data, structure contour maps, selected geophysical data, and contiguous compilations of surficial geology and structural features in the study area. These data were used to construct faulted surfaces that represent the upper and lower subsurface hydrostratigraphic unit boundaries. The digital three-dimensional hydrogeologic framework model is constructed through combining faults, the elevation of the tops of each hydrostratigraphic unit, and boundary lines depicting the subsurface extent of each hydrostratigraphic unit. The framework also compiles a digital representation of the distribution of sedimentary facies within each hydrostratigraphic unit. The digital three-dimensional hydrogeologic model reproduces with reasonable accuracy the previously published subsurface hydrogeologic conceptualization of the aquifer system and represents the large-scale geometry of the subsurface aquifers. The model is at a scale and resolution appropriate for use as the foundation for a numerical hydrologic model of the study area.

Properties of Syntactic Foam for Simulation of Mechanical Insults.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hubbard, Neal Benson; Haulenbeek, Kimberly K.; Spletzer, Matthew A.

Syntactic foam encapsulation protects sensitive components. The energy mitigated by the foam is calculated with numerical simulations. The properties of a syntactic foam consisting of a mixture of an epoxy-rubber adduct and glass microballoons are obtained from published literature and test results. The conditions and outcomes of the tests are discussed. The method for converting published properties and test results to input for finite element models is described. Simulations of the test conditions are performed to validate the inputs.

On the determination of Toxoplasma gondii virulence in mice

USDA-ARS?s Scientific Manuscript database

Toxoplasma gondii is one of the most successful pathogens on earth, capable of infecting mammals and birds. Numerous papers and reports are published on isolation of T .gondii from various natural sources worldwide. The house mouse (Mus musculus) has been used as the laboratory animal model to deter...

Using Genetic Algorithm and MODFLOW to Characterize Aquifer System of Northwest Florida (Published Proceedings)

EPA Science Inventory

By integrating Genetic Algorithm and MODFLOW2005, an optimizing tool is developed to characterize the aquifer system of Region II, Northwest Florida. The history and the newest available observation data of the aquifer system is fitted automatically by using the numerical model c...

Magnetohydrodynamic (MHD) analyses of various forms of activity and their propagation through helio spheric space

NASA Technical Reports Server (NTRS)

Wu, S. T.

1987-01-01

Theoretical and numerical modeling of solar activity and its effects on the solar atmosphere within the context of magnetohydrodynamics were examined. Specifically, the scientific objectives were concerned with the physical mechanisms for the flare energy build-up and subsequent release. In addition, transport of this energy to the corona and solar wind was also investigated. Well-posed, physically self-consistent, numerical simulation models that are based upon magnetohydrodynamics were sought. A systematic investigation of the basic processes that determine the macroscopic dynamic behavior of solar and heliospheric phenomena was conducted. A total of twenty-three articles were accepted and published in major journals. The major achievements are summarized.

Hard Sphere Simulation by Event-Driven Molecular Dynamics: Breakthrough, Numerical Difficulty, and Overcoming the issues

NASA Astrophysics Data System (ADS)

Isobe, Masaharu

Hard sphere/disk systems are among the simplest models and have been used to address numerous fundamental problems in the field of statistical physics. The pioneering numerical works on the solid-fluid phase transition based on Monte Carlo (MC) and molecular dynamics (MD) methods published in 1957 represent historical milestones, which have had a significant influence on the development of computer algorithms and novel tools to obtain physical insights. This chapter addresses the works of Alder's breakthrough regarding hard sphere/disk simulation: (i) event-driven molecular dynamics, (ii) long-time tail, (iii) molasses tail, and (iv) two-dimensional melting/crystallization. From a numerical viewpoint, there are serious issues that must be overcome for further breakthrough. Here, we present a brief review of recent progress in this area.

A kinetic flux vector splitting scheme for shallow water equations incorporating variable bottom topography and horizontal temperature gradients.

PubMed

Saleem, M Rehan; Ashraf, Waqas; Zia, Saqib; Ali, Ishtiaq; Qamar, Shamsul

2018-01-01

This paper is concerned with the derivation of a well-balanced kinetic scheme to approximate a shallow flow model incorporating non-flat bottom topography and horizontal temperature gradients. The considered model equations, also called as Ripa system, are the non-homogeneous shallow water equations considering temperature gradients and non-uniform bottom topography. Due to the presence of temperature gradient terms, the steady state at rest is of primary interest from the physical point of view. However, capturing of this steady state is a challenging task for the applied numerical methods. The proposed well-balanced kinetic flux vector splitting (KFVS) scheme is non-oscillatory and second order accurate. The second order accuracy of the scheme is obtained by considering a MUSCL-type initial reconstruction and Runge-Kutta time stepping method. The scheme is applied to solve the model equations in one and two space dimensions. Several numerical case studies are carried out to validate the proposed numerical algorithm. The numerical results obtained are compared with those of staggered central NT scheme. The results obtained are also in good agreement with the recently published results in the literature, verifying the potential, efficiency, accuracy and robustness of the suggested numerical scheme.

A kinetic flux vector splitting scheme for shallow water equations incorporating variable bottom topography and horizontal temperature gradients

PubMed Central

2018-01-01

This paper is concerned with the derivation of a well-balanced kinetic scheme to approximate a shallow flow model incorporating non-flat bottom topography and horizontal temperature gradients. The considered model equations, also called as Ripa system, are the non-homogeneous shallow water equations considering temperature gradients and non-uniform bottom topography. Due to the presence of temperature gradient terms, the steady state at rest is of primary interest from the physical point of view. However, capturing of this steady state is a challenging task for the applied numerical methods. The proposed well-balanced kinetic flux vector splitting (KFVS) scheme is non-oscillatory and second order accurate. The second order accuracy of the scheme is obtained by considering a MUSCL-type initial reconstruction and Runge-Kutta time stepping method. The scheme is applied to solve the model equations in one and two space dimensions. Several numerical case studies are carried out to validate the proposed numerical algorithm. The numerical results obtained are compared with those of staggered central NT scheme. The results obtained are also in good agreement with the recently published results in the literature, verifying the potential, efficiency, accuracy and robustness of the suggested numerical scheme. PMID:29851978

Investigation of the mechanical behaviour of the foot skin.

PubMed

Fontanella, C G; Carniel, E L; Forestiero, A; Natali, A N

2014-11-01

The aim of this work was to provide computational tools for the characterization of the actual mechanical behaviour of foot skin, accounting for results from experimental testing and histological investigation. Such results show the typical features of skin mechanics, such as anisotropic configuration, almost incompressible behaviour, material and geometrical non linearity. The anisotropic behaviour is mainly determined by the distribution of collagen fibres along specific directions, usually identified as cleavage lines. To evaluate the biomechanical response of foot skin, a refined numerical model of the foot is developed. The overall mechanical behaviour of the skin is interpreted by a fibre-reinforced hyperelastic constitutive model and the orientation of the cleavage lines is implemented by a specific procedure. Numerical analyses that interpret typical loading conditions of the foot are performed. The influence of fibres orientation and distribution on skin mechanics is outlined also by a comparison with results using an isotropic scheme. A specific constitutive formulation is provided to characterize the mechanical behaviour of foot skin. The formulation is applied within a numerical model of the foot to investigate the skin functionality during typical foot movements. Numerical analyses developed accounting for the actual anisotropic configuration of the skin show lower maximum principal stress fields than results from isotropic analyses. The developed computational models provide reliable tools for the investigation of foot tissues functionality. Furthermore, the comparison between numerical results from anisotropic and isotropic models shows the optimal configuration of foot skin. © 2014 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Monolithic superelastic rods with variable flexural stiffness for spinal fusion: modeling of the processing-properties relationship.

PubMed

Facchinello, Yann; Brailovski, Vladimir; Petit, Yvan; Mac-Thiong, Jean-Marc

2014-11-01

The concept of a monolithic Ti-Ni spinal rod with variable flexural stiffness is proposed to reduce the risks associated with spinal fusion. The variable stiffness is conferred to the rod using the Joule-heating local annealing technique. The annealing temperature and the mechanical properties' distributions resulted from this thermal treatment are numerically modeled and experimentally measured. To illustrate the possible applications of such a modeling approach, two case studies are presented: (a) optimization of the Joule-heating strategy to reduce annealing time, and (b) modulation of the rod's overall flexural stiffness using partial annealing. A numerical model of a human spine coupled with the model of the variable flexural stiffness spinal rod developed in this work can ultimately be used to maximize the stabilization capability of spinal instrumentation, while simultaneously decreasing the risks associated with spinal fusion. Copyright © 2014 IPEM. Published by Elsevier Ltd. All rights reserved.

Well-balanced high-order solver for blood flow in networks of vessels with variable properties.

PubMed

Müller, Lucas O; Toro, Eleuterio F

2013-12-01

We present a well-balanced, high-order non-linear numerical scheme for solving a hyperbolic system that models one-dimensional flow in blood vessels with variable mechanical and geometrical properties along their length. Using a suitable set of test problems with exact solution, we rigorously assess the performance of the scheme. In particular, we assess the well-balanced property and the effective order of accuracy through an empirical convergence rate study. Schemes of up to fifth order of accuracy in both space and time are implemented and assessed. The numerical methodology is then extended to realistic networks of elastic vessels and is validated against published state-of-the-art numerical solutions and experimental measurements. It is envisaged that the present scheme will constitute the building block for a closed, global model for the human circulation system involving arteries, veins, capillaries and cerebrospinal fluid. Copyright © 2013 John Wiley & Sons, Ltd.

Numerical weather prediction model tuning via ensemble prediction system

NASA Astrophysics Data System (ADS)

Jarvinen, H.; Laine, M.; Ollinaho, P.; Solonen, A.; Haario, H.

2011-12-01

This paper discusses a novel approach to tune predictive skill of numerical weather prediction (NWP) models. NWP models contain tunable parameters which appear in parameterizations schemes of sub-grid scale physical processes. Currently, numerical values of these parameters are specified manually. In a recent dual manuscript (QJRMS, revised) we developed a new concept and method for on-line estimation of the NWP model parameters. The EPPES ("Ensemble prediction and parameter estimation system") method requires only minimal changes to the existing operational ensemble prediction infra-structure and it seems very cost-effective because practically no new computations are introduced. The approach provides an algorithmic decision making tool for model parameter optimization in operational NWP. In EPPES, statistical inference about the NWP model tunable parameters is made by (i) generating each member of the ensemble of predictions using different model parameter values, drawn from a proposal distribution, and (ii) feeding-back the relative merits of the parameter values to the proposal distribution, based on evaluation of a suitable likelihood function against verifying observations. In the presentation, the method is first illustrated in low-order numerical tests using a stochastic version of the Lorenz-95 model which effectively emulates the principal features of ensemble prediction systems. The EPPES method correctly detects the unknown and wrongly specified parameters values, and leads to an improved forecast skill. Second, results with an atmospheric general circulation model based ensemble prediction system show that the NWP model tuning capacity of EPPES scales up to realistic models and ensemble prediction systems. Finally, a global top-end NWP model tuning exercise with preliminary results is published.

Computer Modeling of Complete IC Fabrication Process.

DTIC Science & Technology

1984-01-01

Venson Shaw 10. C. S. Chang 11. Elizabeth Batson 12. Richard Pinto 13. Jacques Beauduoin SPEAKERS: 1. Tayo Akinwande 2. Dimitri Antoniadis 3. Walter...Numerical Model of Polysilicon Emitter Contacts in Bipolar Transistors,’ To be published IEEE Trans. Electron Devices. [34] M. R. Pinto , R. W. Dutton...Received PhD, Spring 1082) Balaji Swaminathan (Received PhD, Spring 1983) Len Mei Research Associate Michael Kump Research Assistant Mark Pinto Research

Two-Dimensional Model for Reactive-Sorption Columns of Cylindrical Geometry: Analytical Solutions and Moment Analysis.

PubMed

Khan, Farman U; Qamar, Shamsul

2017-05-01

A set of analytical solutions are presented for a model describing the transport of a solute in a fixed-bed reactor of cylindrical geometry subjected to the first (Dirichlet) and third (Danckwerts) type inlet boundary conditions. Linear sorption kinetic process and first-order decay are considered. Cylindrical geometry allows the use of large columns to investigate dispersion, adsorption/desorption and reaction kinetic mechanisms. The finite Hankel and Laplace transform techniques are adopted to solve the model equations. For further analysis, statistical temporal moments are derived from the Laplace-transformed solutions. The developed analytical solutions are compared with the numerical solutions of high-resolution finite volume scheme. Different case studies are presented and discussed for a series of numerical values corresponding to a wide range of mass transfer and reaction kinetics. A good agreement was observed in the analytical and numerical concentration profiles and moments. The developed solutions are efficient tools for analyzing numerical algorithms, sensitivity analysis and simultaneous determination of the longitudinal and transverse dispersion coefficients from a laboratory-scale radial column experiment. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Observation-Based Dissipation and Input Terms for Spectral Wave Models, with End-User Testing

DTIC Science & Technology

2010-01-01

Testing Alexander V. Babanin Swinburne University of Technology, PO Box 218, Hawthorn, Victoria 3140 Australia phone: +61-3-9214-8033 fax: +61-3...Oceanogr., 40(4), 667-683 [published, refereed] Babanin, A.V., D. Chalikov, I.R. Young, and I. Savelyev , 2010b: Numerical and laboratory

Computational Models of Laryngeal Aerodynamics: Potentials and Numerical Costs.

PubMed

Sadeghi, Hossein; Kniesburges, Stefan; Kaltenbacher, Manfred; Schützenberger, Anne; Döllinger, Michael

2018-02-07

Human phonation is based on the interaction between tracheal airflow and laryngeal dynamics. This fluid-structure interaction is based on the energy exchange between airflow and vocal folds. Major challenges in analyzing the phonatory process in-vivo are the small dimensions and the poor accessibility of the region of interest. For improved analysis of the phonatory process, numerical simulations of the airflow and the vocal fold dynamics have been suggested. Even though most of the models reproduced the phonatory process fairly well, development of comprehensive larynx models is still a subject of research. In the context of clinical application, physiological accuracy and computational model efficiency are of great interest. In this study, a simple numerical larynx model is introduced that incorporates the laryngeal fluid flow. It is based on a synthetic experimental model with silicone vocal folds. The degree of realism was successively increased in separate computational models and each model was simulated for 10 oscillation cycles. Results show that relevant features of the laryngeal flow field, such as glottal jet deflection, develop even when applying rather simple static models with oscillating flow rates. Including further phonatory components such as vocal fold motion, mucosal wave propagation, and ventricular folds, the simulations show phonatory key features like intraglottal flow separation and increased flow rate in presence of ventricular folds. The simulation time on 100 CPU cores ranged between 25 and 290 hours, currently restricting clinical application of these models. Nevertheless, results show high potential of numerical simulations for better understanding of phonatory process. Copyright © 2018 The Voice Foundation. Published by Elsevier Inc. All rights reserved.

Approaches to the structural modelling of insect wings.

PubMed Central

Wootton, R J; Herbert, R C; Young, P G; Evans, K E

2003-01-01

Insect wings lack internal muscles, and the orderly, necessary deformations which they undergo in flight and folding are in part remotely controlled, in part encoded in their structure. This factor is crucial in understanding their complex, extremely varied morphology. Models have proved particularly useful in clarifying the facilitation and control of wing deformation. Their development has followed a logical sequence from conceptual models through physical and simple analytical to numerical models. All have value provided their limitations are realized and constant comparisons made with the properties and mechanical behaviour of real wings. Numerical modelling by the finite element method is by far the most time-consuming approach, but has real potential in analysing the adaptive significance of structural details and interpreting evolutionary trends. Published examples are used to review the strengths and weaknesses of each category of model, and a summary is given of new work using finite element modelling to investigate the vibration properties and response to impact of hawkmoth wings. PMID:14561349

Eulerian-Lagrangian numerical scheme for simulating advection, dispersion, and transient storage in streams and a comparison of numerical methods

USGS Publications Warehouse

Cox, T.J.; Runkel, R.L.

2008-01-01

Past applications of one-dimensional advection, dispersion, and transient storage zone models have almost exclusively relied on a central differencing, Eulerian numerical approximation to the nonconservative form of the fundamental equation. However, there are scenarios where this approach generates unacceptable error. A new numerical scheme for this type of modeling is presented here that is based on tracking Lagrangian control volumes across a fixed (Eulerian) grid. Numerical tests are used to provide a direct comparison of the new scheme versus nonconservative Eulerian numerical methods, in terms of both accuracy and mass conservation. Key characteristics of systems for which the Lagrangian scheme performs better than the Eulerian scheme include: nonuniform flow fields, steep gradient plume fronts, and pulse and steady point source loadings in advection-dominated systems. A new analytical derivation is presented that provides insight into the loss of mass conservation in the nonconservative Eulerian scheme. This derivation shows that loss of mass conservation in the vicinity of spatial flow changes is directly proportional to the lateral inflow rate and the change in stream concentration due to the inflow. While the nonconservative Eulerian scheme has clearly worked well for past published applications, it is important for users to be aware of the scheme's limitations. ?? 2008 ASCE.

US EPA 2012 Air Quality Fused Surface for the Conterminous U.S. Map Service

EPA Pesticide Factsheets

This web service contains a polygon layer that depicts fused air quality predictions for 2012 for census tracts in the conterminous United States. Fused air quality predictions (for ozone and PM2.5) are modeled using a Bayesian space-time downscaling fusion model approach described in a series of three published journal papers: 1) (Berrocal, V., Gelfand, A. E. and Holland, D. M. (2012). Space-time fusion under error in computer model output: an application to modeling air quality. Biometrics 68, 837-848; 2) Berrocal, V., Gelfand, A. E. and Holland, D. M. (2010). A bivariate space-time downscaler under space and time misalignment. The Annals of Applied Statistics 4, 1942-1975; and 3) Berrocal, V., Gelfand, A. E., and Holland, D. M. (2010). A spatio-temporal downscaler for output from numerical models. J. of Agricultural, Biological,and Environmental Statistics 15, 176-197) is used to provide daily, predictive PM2.5 (daily average) and O3 (daily 8-hr maximum) surfaces for 2012. Summer (O3) and annual (PM2.5) means calculated and published. The downscaling fusion model uses both air quality monitoring data from the National Air Monitoring Stations/State and Local Air Monitoring Stations (NAMS/SLAMS) and numerical output from the Models-3/Community Multiscale Air Quality (CMAQ). Currently, predictions at the US census tract centroid locations within the 12 km CMAQ domain are archived. Predictions at the CMAQ grid cell centroids, or any desired set of locations co

Modeling radium and radon transport through soil and vegetation

USGS Publications Warehouse

Kozak, J.A.; Reeves, H.W.; Lewis, B.A.

2003-01-01

A one-dimensional flow and transport model was developed to describe the movement of two fluid phases, gas and water, within a porous medium and the transport of 226Ra and 222Rn within and between these two phases. Included in this model is the vegetative uptake of water and aqueous 226Ra and 222Rn that can be extracted from the soil via the transpiration stream. The mathematical model is formulated through a set of phase balance equations and a set of species balance equations. Mass exchange, sink terms and the dependence of physical properties upon phase composition couple the two sets of equations. Numerical solution of each set, with iteration between the sets, is carried out leading to a set-iterative compositional model. The Petrov-Galerkin finite element approach is used to allow for upstream weighting if required for a given simulation. Mass lumping improves solution convergence and stability behavior. The resulting numerical model was applied to four problems and was found to produce accurate, mass conservative solutions when compared to published experimental and numerical results and theoretical column experiments. Preliminary results suggest that the model can be used as an investigative tool to determine the feasibility of phytoremediating radium and radon-contaminated soil. ?? 2003 Elsevier Science B.V. All rights reserved.

On the suitability of steady RANS CFD for forced mixing ventilation at transitional slot Reynolds numbers.

PubMed

van Hooff, T; Blocken, B; van Heijst, G J F

2013-06-01

Accurate prediction of ventilation flow is of primary importance for designing a healthy, comfortable, and energy-efficient indoor environment. Since the 1970s, the use of computational fluid dynamics (CFD) has increased tremendously, and nowadays, it is one of the primary methods to assess ventilation flow in buildings. The most commonly used numerical approach consists of solving the steady Reynolds-averaged Navier-Stokes (RANS) equations with a turbulence model to provide closure. This article presents a detailed validation study of steady RANS for isothermal forced mixing ventilation of a cubical enclosure driven by a transitional wall jet. The validation is performed using particle image velocimetry (PIV) measurements for slot Reynolds numbers of 1000 and 2500. Results obtained with the renormalization group (RNG) k-ε model, a low-Reynolds k-ε model, the shear stress transport (SST) k-ω model, and a Reynolds stress model (RSM) are compared with detailed experimental data. In general, the RNG k-ε model shows the weakest performance, whereas the low-Re k-ε model shows the best agreement with the measurements. In addition, the influence of the turbulence model on the predicted air exchange efficiency in the cubical enclosure is analyzed, indicating differences up to 44% for this particular case. This article presents a detailed numerical study of isothermal forced mixing ventilation driven by a low-velocity (transitional) wall jet using steady computational fluid dynamics (CFD) simulations. It is shown that the numerically obtained room airflow patterns are highly dependent on the chosen turbulence model and large differences with experimentally obtained velocity fields can be present. The renormalization group (RNG) k-ε model, which is commonly used for room airflow modeling, shows the largest deviations from the measured velocities, indicating the care that must be taken when selecting a turbulence model for room airflow prediction. As a result of the different predictions of the flow pattern in the room, large differences are present between the predicted air exchange efficiency obtained with the four tested turbulence models, which can be as high as 44%. © 2012 John Wiley & Sons A/S. Published by Blackwell Publishing Ltd.

The unified acoustic and aerodynamic prediction theory of advanced propellers in the time domain

NASA Technical Reports Server (NTRS)

Farassat, F.

1984-01-01

This paper presents some numerical results for the noise of an advanced supersonic propeller based on a formulation published last year. This formulation was derived to overcome some of the practical numerical difficulties associated with other acoustic formulations. The approach is based on the Ffowcs Williams-Hawkings equation and time domain analysis is used. To illustrate the method of solution, a model problem in three dimensions and based on the Laplace equation is solved. A brief sketch of derivation of the acoustic formula is then given. Another model problem is used to verify validity of the acoustic formulation. A recent singular integral equation for aerodynamic applications derived from the acoustic formula is also presented here.

A novel approach to calibrate the hemodynamic model using functional Magnetic Resonance Imaging (fMRI) measurements.

PubMed

Khoram, Nafiseh; Zayane, Chadia; Djellouli, Rabia; Laleg-Kirati, Taous-Meriem

2016-03-15

The calibration of the hemodynamic model that describes changes in blood flow and blood oxygenation during brain activation is a crucial step for successfully monitoring and possibly predicting brain activity. This in turn has the potential to provide diagnosis and treatment of brain diseases in early stages. We propose an efficient numerical procedure for calibrating the hemodynamic model using some fMRI measurements. The proposed solution methodology is a regularized iterative method equipped with a Kalman filtering-type procedure. The Newton component of the proposed method addresses the nonlinear aspect of the problem. The regularization feature is used to ensure the stability of the algorithm. The Kalman filter procedure is incorporated here to address the noise in the data. Numerical results obtained with synthetic data as well as with real fMRI measurements are presented to illustrate the accuracy, robustness to the noise, and the cost-effectiveness of the proposed method. We present numerical results that clearly demonstrate that the proposed method outperforms the Cubature Kalman Filter (CKF), one of the most prominent existing numerical methods. We have designed an iterative numerical technique, called the TNM-CKF algorithm, for calibrating the mathematical model that describes the single-event related brain response when fMRI measurements are given. The method appears to be highly accurate and effective in reconstructing the BOLD signal even when the measurements are tainted with high noise level (as high as 30%). Published by Elsevier B.V.

A Short Research Note on Calculating Exact Distribution Functions and Random Sampling for the 3D NFW Profile

NASA Astrophysics Data System (ADS)

Robotham, A. S. G.; Howlett, Cullan

2018-06-01

In this short note we publish the analytic quantile function for the Navarro, Frenk & White (NFW) profile. All known published and coded methods for sampling from the 3D NFW PDF use either accept-reject, or numeric interpolation (sometimes via a lookup table) for projecting random Uniform samples through the quantile distribution function to produce samples of the radius. This is a common requirement in N-body initial condition (IC), halo occupation distribution (HOD), and semi-analytic modelling (SAM) work for correctly assigning particles or galaxies to positions given an assumed concentration for the NFW profile. Using this analytic description allows for much faster and cleaner code to solve a common numeric problem in modern astronomy. We release R and Python versions of simple code that achieves this sampling, which we note is trivial to reproduce in any modern programming language.

BIOB: a mathematical model for the biodegradation of low solubility hydrocarbons.

PubMed

Geng, Xiaolong; Boufadel, Michel C; Personna, Yves R; Lee, Ken; Tsao, David; Demicco, Erik D

2014-06-15

Modeling oil biodegradation is an important step in predicting the long term fate of oil on beaches. Unfortunately, existing models do not account mechanistically for environmental factors, such as pore water nutrient concentration, affecting oil biodegradation, rather in an empirical way. We present herein a numerical model, BIOB, to simulate the biodegradation of insoluble attached hydrocarbon. The model was used to simulate an experimental oil spill on a sand beach. The biodegradation kinetic parameters were estimated by fitting the model to the experimental data of alkanes and aromatics. It was found that parameter values are comparable to their counterparts for the biodegradation of dissolved organic matter. The biodegradation of aromatics was highly affected by the decay of aromatic biomass, probably due to its low growth rate. Numerical simulations revealed that the biodegradation rate increases by 3-4 folds when the nutrient concentration is increased from 0.2 to 2.0 mg N/L. Published by Elsevier Ltd.

Quasi-static image-based immersed boundary-finite element model of left ventricle under diastolic loading

PubMed Central

Gao, Hao; Wang, Huiming; Berry, Colin; Luo, Xiaoyu; Griffith, Boyce E

2014-01-01

Finite stress and strain analyses of the heart provide insight into the biomechanics of myocardial function and dysfunction. Herein, we describe progress toward dynamic patient-specific models of the left ventricle using an immersed boundary (IB) method with a finite element (FE) structural mechanics model. We use a structure-based hyperelastic strain-energy function to describe the passive mechanics of the ventricular myocardium, a realistic anatomical geometry reconstructed from clinical magnetic resonance images of a healthy human heart, and a rule-based fiber architecture. Numerical predictions of this IB/FE model are compared with results obtained by a commercial FE solver. We demonstrate that the IB/FE model yields results that are in good agreement with those of the conventional FE model under diastolic loading conditions, and the predictions of the LV model using either numerical method are shown to be consistent with previous computational and experimental data. These results are among the first to analyze the stress and strain predictions of IB models of ventricular mechanics, and they serve both to verify the IB/FE simulation framework and to validate the IB/FE model. Moreover, this work represents an important step toward using such models for fully dynamic fluid–structure interaction simulations of the heart. © 2014 The Authors. International Journal for Numerical Methods in Engineering published by John Wiley & Sons, Ltd. PMID:24799090

Finite Element Modelling and Analysis of Conventional Pultrusion Processes

NASA Astrophysics Data System (ADS)

Akishin, P.; Barkanov, E.; Bondarchuk, A.

2015-11-01

Pultrusion is one of many composite manufacturing techniques and one of the most efficient methods for producing fiber reinforced polymer composite parts with a constant cross-section. Numerical simulation is helpful for understanding the manufacturing process and developing scientific means for the pultrusion tooling design. Numerical technique based on the finite element method has been developed for the simulation of pultrusion processes. It uses the general purpose finite element software ANSYS Mechanical. It is shown that the developed technique predicts the temperature and cure profiles, which are in good agreement with those published in the open literature.

Dynamics of climate-based malaria transmission model with age-structured human population

NASA Astrophysics Data System (ADS)

Addawe, Joel; Pajimola, Aprimelle Kris

2016-10-01

In this paper, we proposed to study the dynamics of malaria transmission with periodic birth rate of the vector and an age-structure for the human population. The human population is divided into two compartments: pre-school (0-5 years) and the rest of the human population. We showed the existence of a disease-free equilibrium point. Using published epidemiological parameters, we use numerical simulations to show potential effect of climate change in the dynamics of age-structured malaria transmission. Numerical simulations suggest that there exists an asymptotically attractive solution that is positive and periodic.

Numerical investigation of potential stratification caused by a cryogenic helium spill inside a tunnel

NASA Astrophysics Data System (ADS)

Sinclair, Cameron; Malecha, Ziemowit; Jedrusyna, Artur

2018-04-01

The sudden release of cryogenic fluid into an accelerator tunnel can pose a significant health and safety risk. For this reason, it is important to evaluate the consequences of such a spill. Previous publications concentrated on either Oxygen Deficiency Hazard or the evaluation of mathematical models using experimental data. No studies to date have focussed on the influence of cryogen inlet conditions on flow development. In this paper, the stratification behaviour of low-temperature helium released into an air-filled accelerator tunnel is investigated for varying helium inlet diameters. A numerical model was constructed using the OpenFOAM Toolbox of a generalised 3D geometry, with similar hydraulic characteristics to the CERN and SLAC tunnels. This model has been validated against published experimental and numerical data. A dimensionless parameter, based on Bakke number, was then determined for the onset of stratification, taking into account the helium inlet diameter; a dimensionless parameter for the degree of stratification was also employed. The simulated flow behaviour is described in terms of these dimensionless parameters, as well as the temperature and oxygen concentration at various heights throughout the tunnel.

Numerical Flexural Strength Analysis of Thermally Stressed Delaminated Composite Structure under Sinusoidal Loading

NASA Astrophysics Data System (ADS)

Hirwani, C. K.; Biswash, S.; Mehar, K.; Panda, S. K.

2018-03-01

In this article, we investigate the thermomechanical deflection characteristics of the debonded composite plate structure using an isoparametric type of higher-order finite element model. The current formulation is derived using higher-order kinematic theory and the displacement variables described as constant along the thickness direction whereas varying nonlinearly for the in-plane directions. The present mid-plane kinematic model mainly obsoletes the use of shear correction factor as in the other lower-order theories. The separation between the adjacent layers is modeled via the sub-laminate technique and the intermittent continuity conditions imposed to avoid the mathematical ill conditions. The governing equation of equilibrium of the damaged plate structure under the combined state of loading are obtained using the variational principle and solved numerically to compute the deflection values. Further, the convergence test has been performed by refining the numbers of elements and validated through comparing the present results with available published values. The usefulness of the proposed formulation has been discussed by solving the different kind of numerical examples including the size, location and position of delamination.

A numerical study of diurnally varying surface temperature on flow patterns and pollutant dispersion in street canyons

NASA Astrophysics Data System (ADS)

Tan, Zijing; Dong, Jingliang; Xiao, Yimin; Tu, Jiyuan

2015-03-01

The impacts of the diurnal variation of surface temperature on street canyon flow pattern and pollutant dispersion are investigated based on a two-dimensional street canyon model under different thermal stratifications. Uneven distributed street temperature conditions and a user-defined wall function representing the heat transfer between the air and the street canyon are integrated into the current numerical model. The prediction accuracy of this model is successfully validated against a published wind tunnel experiment. Then, a series of numerical simulations representing four time scenarios (Morning, Afternoon, Noon and Night) are performed at different Bulk Richardson number (Rb). The results demonstrate that uneven distributed street temperature conditions significantly alters street canyon flow structure and pollutant dispersion characteristics compared with conventional uniform street temperature assumption, especially for the morning event. Moreover, air flow patterns and pollutant dispersion are greatly influenced by diurnal variation of surface temperature under unstable stratification conditions. Furthermore, the residual pollutant in near-ground-zone decreases as Rb increases in noon, afternoon and night events under all studied stability conditions.

Timber products output and timber harvests in Alaska: an addendum

Treesearch

Allen M. Brackley; Richard W. Haynes

2008-01-01

Updated projections of demand for Alaska timber were published July 2006. Their application in land management planning for the Tongass National Forest has resulted in numerous questions and requests for clarification. This note discusses a broad range of these questions from the context of why we do projections, the model we used, the assumptions that determine the...

Numerical cell model investigating cellular carbon fluxes in Emiliania huxleyi.

PubMed

Holtz, Lena-Maria; Wolf-Gladrow, Dieter; Thoms, Silke

2015-01-07

Coccolithophores play a crucial role in the marine carbon cycle and thus it is interesting to know how they will respond to climate change. After several decades of research the interplay between intracellular processes and the marine carbonate system is still not well understood. On the basis of experimental findings given in literature, a numerical cell model is developed that describes inorganic carbon fluxes between seawater and the intracellular sites of calcite precipitation and photosynthetic carbon fixation. The implemented cell model consists of four compartments, for each of which the carbonate system is resolved individually. The four compartments are connected to each other via H(+), CO2, and HCO3(-) fluxes across the compartment-confining membranes. For CO2 accumulation around RubisCO, an energy-efficient carbon concentrating mechanism is proposed that relies on diffusive CO2 uptake. At low external CO2 concentrations and high light intensities, CO2 diffusion does not suffice to cover the carbon demand of photosynthesis and an additional uptake of external HCO3(-) becomes essential. The model is constrained by data of Emiliania huxleyi, the numerically most abundant coccolithophore species in the present-day ocean. Copyright © 2014 The Authors. Published by Elsevier Ltd.. All rights reserved.

Face-seal lubrication: 1: Proposed and published models

NASA Technical Reports Server (NTRS)

Ludwig, L. P.

1976-01-01

The numerous published theories on the mechanism of hydrodynamic lubrication of face seals were reviewed. These theories employ either an inclined-slider-bearing macrogeometry or an inclined-slider-bearing microgeometry to produce hydrodynamic pressure that separates the surfaces of the primary seal. Secondary seal friction and primary ring inertia effects are not considered. Hypothetical seal operating models were devised to include secondary seal friction and primary ring inertia effects. It was hypothesized that these effects induce relative angular misalinement of the primary seal faces and that this misalinement is, in effect, an inclined slider macrogeometry. Stable running was postulated for some of these hypothetical operating models. In others, periodic loss of hydrodynamic lubrication was postulated to be possible with certain combinations of waviness and angular misalinement. Application of restrictions that apply to seal operation led to a hydrodynamic governing equation for the new model that is a two-dimensional, time-dependent Reynolds equation with the short-bearing approximation.

Computational fluid dynamics modeling of gas dispersion in multi impeller bioreactor.

PubMed

Ahmed, Syed Ubaid; Ranganathan, Panneerselvam; Pandey, Ashok; Sivaraman, Savithri

2010-06-01

In the present study, experiments have been carried out to identify various flow regimes in a dual Rushton turbines stirred bioreactor for different gas flow rates and impeller speeds. The hydrodynamic parameters like fractional gas hold-up, power consumption and mixing time have been measured. A two fluid model along with MUSIG model to handle polydispersed gas flow has been implemented to predict the various flow regimes and hydrodynamic parameters in the dual turbines stirred bioreactor. The computational model has been mapped on commercial solver ANSYS CFX. The flow regimes predicted by numerical simulations are validated with the experimental results. The present model has successfully captured the flow regimes as observed during experiments. The measured gross flow characteristics like fractional gas hold-up, and mixing time have been compared with numerical simulations. Also the effect of gas flow rate and impeller speed on gas hold-up and power consumption have been investigated. (c) 2009 The Society for Biotechnology, Japan. Published by Elsevier B.V. All rights reserved.

A numerical model for density-and-viscosity-dependent flows in two-dimensional variably saturated porous media

NASA Astrophysics Data System (ADS)

Boufadel, Michel C.; Suidan, Makram T.; Venosa, Albert D.

1999-04-01

We present a formulation for water flow and solute transport in two-dimensional variably saturated media that accounts for the effects of the solute on water density and viscosity. The governing equations are cast in a dimensionless form that depends on six dimensionless groups of parameters. These equations are discretized in space using the Galerkin finite element formulation and integrated in time using the backward Euler scheme with mass lumping. The modified Picard method is used to linearize the water flow equation. The resulting numerical model, the MARUN model, is verified by comparison to published numerical results. It is then used to investigate beach hydraulics at seawater concentration (about 30 g l -1) in the context of nutrients delivery for bioremediation of oil spills on beaches. Numerical simulations that we conducted in a rectangular section of a hypothetical beach revealed that buoyancy in the unsaturated zone is significant in soils that are fine textured, with low anisotropy ratio, and/or exhibiting low physical dispersion. In such situations, application of dissolved nutrients to a contaminated beach in a freshwater solution is superior to their application in a seawater solution. Concentration-engendered viscosity effects were negligible with respect to concentration-engendered density effects for the cases that we considered.

Application of an NLME-Stochastic Deconvolution Approach to Level A IVIVC Modeling.

PubMed

Kakhi, Maziar; Suarez-Sharp, Sandra; Shepard, Terry; Chittenden, Jason

2017-07-01

Stochastic deconvolution is a parameter estimation method that calculates drug absorption using a nonlinear mixed-effects model in which the random effects associated with absorption represent a Wiener process. The present work compares (1) stochastic deconvolution and (2) numerical deconvolution, using clinical pharmacokinetic (PK) data generated for an in vitro-in vivo correlation (IVIVC) study of extended release (ER) formulations of a Biopharmaceutics Classification System class III drug substance. The preliminary analysis found that numerical and stochastic deconvolution yielded superimposable fraction absorbed (F abs ) versus time profiles when supplied with exactly the same externally determined unit impulse response parameters. In a separate analysis, a full population-PK/stochastic deconvolution was applied to the clinical PK data. Scenarios were considered in which immediate release (IR) data were either retained or excluded to inform parameter estimation. The resulting F abs profiles were then used to model level A IVIVCs. All the considered stochastic deconvolution scenarios, and numerical deconvolution, yielded on average similar results with respect to the IVIVC validation. These results could be achieved with stochastic deconvolution without recourse to IR data. Unlike numerical deconvolution, this also implies that in crossover studies where certain individuals do not receive an IR treatment, their ER data alone can still be included as part of the IVIVC analysis. Published by Elsevier Inc.

Numerical analysis of the transportation characteristics of a self-running sliding stage based on near-field acoustic levitation.

PubMed

Feng, Kai; Liu, Yuanyuan; Cheng, Miaomiao

2015-12-01

Owing to its distinct non-contact and oil-free characteristics, a self-running sliding stage based on near-field acoustic levitation can be used in an environment, which demands clean rooms and zero noise. This paper presents a numerical analysis on the lifting and transportation capacity of a non-contact transportation system. Two simplified structure models, namely, free vibration and force vibration models, are proposed for the study of the displacement amplitude distribution of two cases using the finite element method. After coupling the stage displacement into the film thickness, the Reynolds equation is solved by the finite difference method to obtain the lifting and thrusting forces. Parametric analyses of the effects of amplitude, frequency, and standing wave ratio (SWR) on the sliding stage dynamic performance are investigated. Numerical results show good agreement with published experimental values. The predictions also reveal that greater transportation capacity of the self-running sliding stage is generally achieved at less SWR and at higher amplitude.

Fate of microplastics and mesoplastics carried by surface currents and wind waves: A numerical model approach in the Sea of Japan.

PubMed

Iwasaki, Shinsuke; Isobe, Atsuhiko; Kako, Shin'ichiro; Uchida, Keiichi; Tokai, Tadashi

2017-08-15

A numerical model was established to reproduce the oceanic transport processes of microplastics and mesoplastics in the Sea of Japan. A particle tracking model, where surface ocean currents were given by a combination of a reanalysis ocean current product and Stokes drift computed separately by a wave model, simulated particle movement. The model results corresponded with the field survey. Modeled results indicated the micro- and mesoplastics are moved northeastward by the Tsushima Current. Subsequently, Stokes drift selectively moves mesoplastics during winter toward the Japanese coast, resulting in increased contributions of mesoplastics south of 39°N. Additionally, Stokes drift also transports micro- and mesoplastics out to the sea area south of the subpolar front where the northeastward Tsushima Current carries them into the open ocean via the Tsugaru and Soya straits. Average transit time of modeled particles in the Sea of Japan is drastically reduced when including Stokes drift in the model. Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

An update of the Death Valley regional groundwater flow system transient model, Nevada and California

USGS Publications Warehouse

Belcher, Wayne R.; Sweetkind, Donald S.; Faunt, Claudia C.; Pavelko, Michael T.; Hill, Mary C.

2017-01-19

Since the original publication of the Death Valley regional groundwater flow system (DVRFS) numerical model in 2004, more information on the regional groundwater flow system in the form of new data and interpretations has been compiled. Cooperators such as the Bureau of Land Management, National Park Service, U.S. Fish and Wildlife Service, the Department of Energy, and Nye County, Nevada, recognized a need to update the existing regional numerical model to maintain its viability as a groundwater management tool for regional stakeholders. The existing DVRFS numerical flow model was converted to MODFLOW-2005, updated with the latest available data, and recalibrated. Five main data sets were revised: (1) recharge from precipitation varying in time and space, (2) pumping data, (3) water-level observations, (4) an updated regional potentiometric map, and (5) a revision to the digital hydrogeologic framework model.The resulting DVRFS version 2.0 (v. 2.0) numerical flow model simulates groundwater flow conditions for the Death Valley region from 1913 to 2003 to correspond to the time frame for the most recently published (2008) water-use data. The DVRFS v 2.0 model was calibrated by using the Tikhonov regularization functionality in the parameter estimation and predictive uncertainty software PEST. In order to assess the accuracy of the numerical flow model in simulating regional flow, the fit of simulated to target values (consisting of hydraulic heads and flows, including evapotranspiration and spring discharge, flow across the model boundary, and interbasin flow; the regional water budget; values of parameter estimates; and sensitivities) was evaluated. This evaluation showed that DVRFS v. 2.0 simulates conditions similar to DVRFS v. 1.0. Comparisons of the target values with simulated values also indicate that they match reasonably well and in some cases (boundary flows and discharge) significantly better than in DVRFS v. 1.0.

Microwave thermal ablation: Effects of tissue properties variations on predictive models for treatment planning.

PubMed

Lopresto, Vanni; Pinto, Rosanna; Farina, Laura; Cavagnaro, Marta

2017-08-01

Microwave thermal ablation (MTA) therapy for cancer treatments relies on the absorption of electromagnetic energy at microwave frequencies to induce a very high and localized temperature increase, which causes an irreversible thermal damage in the target zone. Treatment planning in MTA is based on experimental observations of ablation zones in ex vivo tissue, while predicting the treatment outcomes could be greatly improved by reliable numerical models. In this work, a fully dynamical simulation model is exploited to look at effects of temperature-dependent variations in the dielectric and thermal properties of the targeted tissue on the prediction of the temperature increase and the extension of the thermally coagulated zone. In particular, the influence of measurement uncertainty of tissue parameters on the numerical results is investigated. Numerical data were compared with data from MTA experiments performed on ex vivo bovine liver tissue at 2.45GHz, with a power of 60W applied for 10min. By including in the simulation model an uncertainty budget (CI=95%) of ±25% in the properties of the tissue due to inaccuracy of measurements, numerical results were achieved in the range of experimental data. Obtained results also showed that the specific heat especially influences the extension of the thermally coagulated zone, with an increase of 27% in length and 7% in diameter when a variation of -25% is considered with respect to the value of the reference simulation model. Copyright © 2017 IPEM. Published by Elsevier Ltd. All rights reserved.

Robust synchronization of master-slave chaotic systems using approximate model: An experimental study.

PubMed

Ahmed, Hafiz; Salgado, Ivan; Ríos, Héctor

2018-02-01

Robust synchronization of master slave chaotic systems are considered in this work. First an approximate model of the error system is obtained using the ultra-local model concept. Then a Continuous Singular Terminal Sliding-Mode (CSTSM) Controller is designed for the purpose of synchronization. The proposed approach is output feedback-based and uses fixed-time higher order sliding-mode (HOSM) differentiator for state estimation. Numerical simulation and experimental results are given to show the effectiveness of the proposed technique. Copyright © 2018 ISA. Published by Elsevier Ltd. All rights reserved.

Electrostatic forces in the Poisson-Boltzmann systems

NASA Astrophysics Data System (ADS)

Xiao, Li; Cai, Qin; Ye, Xiang; Wang, Jun; Luo, Ray

2013-09-01

Continuum modeling of electrostatic interactions based upon numerical solutions of the Poisson-Boltzmann equation has been widely used in structural and functional analyses of biomolecules. A limitation of the numerical strategies is that it is conceptually difficult to incorporate these types of models into molecular mechanics simulations, mainly because of the issue in assigning atomic forces. In this theoretical study, we first derived the Maxwell stress tensor for molecular systems obeying the full nonlinear Poisson-Boltzmann equation. We further derived formulations of analytical electrostatic forces given the Maxwell stress tensor and discussed the relations of the formulations with those published in the literature. We showed that the formulations derived from the Maxwell stress tensor require a weaker condition for its validity, applicable to nonlinear Poisson-Boltzmann systems with a finite number of singularities such as atomic point charges and the existence of discontinuous dielectric as in the widely used classical piece-wise constant dielectric models.

Sensitivity of the coastal tsunami simulation to the complexity of the 2011 Tohoku earthquake source model

NASA Astrophysics Data System (ADS)

Monnier, Angélique; Loevenbruck, Anne; Gailler, Audrey; Hébert, Hélène

2016-04-01

The 11 March 2011 Tohoku-Oki event, whether earthquake or tsunami, is exceptionally well documented. A wide range of onshore and offshore data has been recorded from seismic, geodetic, ocean-bottom pressure and sea level sensors. Along with these numerous observations, advance in inversion technique and computing facilities have led to many source studies. Rupture parameters inversion such as slip distribution and rupture history permit to estimate the complex coseismic seafloor deformation. From the numerous published seismic source studies, the most relevant coseismic source models are tested. The comparison of the predicted signals generated using both static and cinematic ruptures to the offshore and coastal measurements help determine which source model should be used to obtain the more consistent coastal tsunami simulations. This work is funded by the TANDEM project, reference ANR-11-RSNR-0023-01 of the French Programme Investissements d'Avenir (PIA 2014-2018).

Numerical comparison of grid pattern diffraction effects through measurement and modeling with OptiScan software

NASA Astrophysics Data System (ADS)

Murray, Ian B.; Densmore, Victor; Bora, Vaibhav; Pieratt, Matthew W.; Hibbard, Douglas L.; Milster, Tom D.

2011-06-01

Coatings of various metalized patterns are used for heating and electromagnetic interference (EMI) shielding applications. Previous work has focused on macro differences between different types of grids, and has shown good correlation between measurements and analyses of grid diffraction. To advance this work, we have utilized the University of Arizona's OptiScan software, which has been optimized for this application by using the Babinet Principle. When operating on an appropriate computer system, this algorithm produces results hundreds of times faster than standard Fourier-based methods, and allows realistic cases to be modeled for the first time. By using previously published derivations by Exotic Electro-Optics, we compare diffraction performance of repeating and randomized grid patterns with equivalent sheet resistance using numerical performance metrics. Grid patterns of each type are printed on optical substrates and measured energy is compared against modeled energy.

Application of geometric approximation to the CPMG experiment: Two- and three-site exchange.

PubMed

Chao, Fa-An; Byrd, R Andrew

2017-04-01

The Carr-Purcell-Meiboom-Gill (CPMG) experiment is one of the most classical and well-known relaxation dispersion experiments in NMR spectroscopy, and it has been successfully applied to characterize biologically relevant conformational dynamics in many cases. Although the data analysis of the CPMG experiment for the 2-site exchange model can be facilitated by analytical solutions, the data analysis in a more complex exchange model generally requires computationally-intensive numerical analysis. Recently, a powerful computational strategy, geometric approximation, has been proposed to provide approximate numerical solutions for the adiabatic relaxation dispersion experiments where analytical solutions are neither available nor feasible. Here, we demonstrate the general potential of geometric approximation by providing a data analysis solution of the CPMG experiment for both the traditional 2-site model and a linear 3-site exchange model. The approximate numerical solution deviates less than 0.5% from the numerical solution on average, and the new approach is computationally 60,000-fold more efficient than the numerical approach. Moreover, we find that accurate dynamic parameters can be determined in most cases, and, for a range of experimental conditions, the relaxation can be assumed to follow mono-exponential decay. The method is general and applicable to any CPMG RD experiment (e.g. N, C', C α , H α , etc.) The approach forms a foundation of building solution surfaces to analyze the CPMG experiment for different models of 3-site exchange. Thus, the geometric approximation is a general strategy to analyze relaxation dispersion data in any system (biological or chemical) if the appropriate library can be built in a physically meaningful domain. Published by Elsevier Inc.

Physics of the atmosphere: Response of the water vapor channel of the Meteosat satellite

NASA Technical Reports Server (NTRS)

Roulleau, M.; Poc, M. M.; Scott, N.; Chedin, A.

1980-01-01

An accurate model of the atmospheric transmission function is used to obtain the relationship between the cloudless radiances measured by the 6-7 microns Meteosat radiometer (water vapor channel) and the numerical parameters associated to each point of an image. This relationship is compared to the temporary calibration curve published by the European Space Agency.

Relativistic Astrophysics in Black Hole and Low-Mass Neutron Star X-ray Binaries

NASA Technical Reports Server (NTRS)

2000-01-01

During the five-year period, our study of "Relativistic Astrophysics in Black Hole and Low-Mass Neutron Star X-ray Binaries" has been focused on the following aspects: observations, data analysis, Monte-Carlo simulations, numerical calculations, and theoretical modeling. Most of the results of our study have been published in refereed journals and conference presentations.

Evanescent Waves in High Numerical Aperture Aplanatic Solid Immersion Microscopy: Effects of Forbidden Light on Subsurface Imaging (Open Access, Publisher’s Version)

DTIC Science & Technology

2014-03-24

of the aSIL microscopy for semiconductor failure analysis and is applicable to imaging in quantum optics [18], biophotonics [19] and metrology [20...is usually of interest, the model can be adapted to applications in fields such as quantum optics and biophotonics for which the non-resonant

Direct numerical simulation of cellular-scale blood flow in microvascular networks

NASA Astrophysics Data System (ADS)

Balogh, Peter; Bagchi, Prosenjit

2017-11-01

A direct numerical simulation method is developed to study cellular-scale blood flow in physiologically realistic microvascular networks that are constructed in silico following published in vivo images and data, and are comprised of bifurcating, merging, and winding vessels. The model resolves large deformation of individual red blood cells (RBC) flowing in such complex networks. The vascular walls and deformable interfaces of the RBCs are modeled using the immersed-boundary methods. Time-averaged hemodynamic quantities obtained from the simulations agree quite well with published in vivo data. Our simulations reveal that in several vessels the flow rates and pressure drops could be negatively correlated. The flow resistance and hematocrit are also found to be negatively correlated in some vessels. These observations suggest a deviation from the classical Poiseuille's law in such vessels. The cells are observed to frequently jam at vascular bifurcations resulting in reductions in hematocrit and flow rate in the daughter and mother vessels. We find that RBC jamming results in several orders of magnitude increase in hemodynamic resistance, and thus provides an additional mechanism of increased in vivo blood viscosity as compared to that determined in vitro. Funded by NSF CBET 1604308.

CE-QUAL-W2: A Numerical Two-Dimensional, Laterally Averaged Model of Hydrodynamics and Water Quality; User’s Manual.

DTIC Science & Technology

1986-08-01

publication by Ms. Jessica S. Ruff, Information Products Division, WES. This manual is published in loose-leaf format for convenience in ." ._ periodic...transfer computations. m. Variety of output options. Background 8. This manual is a product of a program of evaluation and refinement of mathematical water...zooplankton and higher order herbivores. However, these groups are presently not included in the model. Macrophyte production may also have an impact upon

Study of heat and mass transfer of water evaporation in a gypsum board subjected to natural convection

NASA Astrophysics Data System (ADS)

Zannouni, K.; El Abrach, H.; Dhahri, H.; Mhimid, A.

2017-06-01

The present paper reports a numerical study to investigate the drying of rectangular gypsum sample based on a diffusive model. Both vertical and low sides of the porous media are treated as adiabatic and impermeable surfaces plate. The upper face of the plate represents the permeable interface. The energy equation model is based on the local thermal equilibrium assumption between the fluid and the solid phases. The lattice Boltzmann method (LBM) is used for solving the governing differential equations system. The obtained numerical results concerning the moisture content and the temperature within a gypsum sample were discussed. A comprehensive analysis of the influence of the mass transfer coefficient, the convective heat transfer coefficient, the external temperature, the relative humidity and the diffusion coefficient on macroscopic fields are also investigated. They all presented results in this paper and obtained in the stable regime correspond to time superior than 4000 s. Therefore the numerical error is inferior to 2%. The experimental data and the descriptive information of the approach indicate an excellent agreement between the results of our developed numerical code based on the LBM and the published ones.

Disadvantages of interfragmentary shear on fracture healing--mechanical insights through numerical simulation.

PubMed

Steiner, Malte; Claes, Lutz; Ignatius, Anita; Simon, Ulrich; Wehner, Tim

2014-07-01

The outcome of secondary fracture healing processes is strongly influenced by interfragmentary motion. Shear movement is assumed to be more disadvantageous than axial movement, however, experimental results are contradictory. Numerical fracture healing models allow simulation of the fracture healing process with variation of single input parameters and under comparable, normalized mechanical conditions. Thus, a comparison of the influence of different loading directions on the healing process is possible. In this study we simulated fracture healing under several axial compressive, and translational and torsional shear movement scenarios, and compared their respective healing times. Therefore, we used a calibrated numerical model for fracture healing in sheep. Numerous variations of movement amplitudes and musculoskeletal loads were simulated for the three loading directions. Our results show that isolated axial compression was more beneficial for the fracture healing success than both isolated shearing conditions for load and displacement magnitudes which were identical as well as physiological different, and even for strain-based normalized comparable conditions. Additionally, torsional shear movements had less impeding effects than translational shear movements. Therefore, our findings suggest that osteosynthesis implants can be optimized, in particular, to limit translational interfragmentary shear under musculoskeletal loading. © 2014 Orthopaedic Research Society. Published by Wiley Periodicals, Inc.

Performance comparison of the Prophecy (forecasting) Algorithm in FFT form for unseen feature and time-series prediction

NASA Astrophysics Data System (ADS)

Jaenisch, Holger; Handley, James

2013-06-01

We introduce a generalized numerical prediction and forecasting algorithm. We have previously published it for malware byte sequence feature prediction and generalized distribution modeling for disparate test article analysis. We show how non-trivial non-periodic extrapolation of a numerical sequence (forecast and backcast) from the starting data is possible. Our ancestor-progeny prediction can yield new options for evolutionary programming. Our equations enable analytical integrals and derivatives to any order. Interpolation is controllable from smooth continuous to fractal structure estimation. We show how our generalized trigonometric polynomial can be derived using a Fourier transform.

Socio-economic applications of finite state mean field games.

PubMed

Gomes, Diogo; Velho, Roberto M; Wolfram, Marie-Therese

2014-11-13

In this paper, we present different applications of finite state mean field games to socio-economic sciences. Examples include paradigm shifts in the scientific community or consumer choice behaviour in the free market. The corresponding finite state mean field game models are hyperbolic systems of partial differential equations, for which we present and validate different numerical methods. We illustrate the behaviour of solutions with various numerical experiments, which show interesting phenomena such as shock formation. Hence, we conclude with an investigation of the shock structure in the case of two-state problems. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

An Elementary Introduction to Recently Developed Computational Methods for Solving Singularly Perturbed Partial Differential Equations Arising in Science and Engineering

NASA Astrophysics Data System (ADS)

Kumar, Manoj; Srivastava, Akanksha

2013-01-01

This paper presents a survey of innovative approaches of the most effective computational techniques for solving singular perturbed partial differential equations, which are useful because of their numerical and computer realizations. Many applied problems appearing in semiconductors theory, biochemistry, kinetics, theory of electrical chains, economics, solid mechanics, fluid dynamics, quantum mechanics, and many others can be modelled as singularly perturbed systems. Here, we summarize a wide range of research articles published by numerous researchers during the last ten years to get a better view of the present scenario in this area of research.

Antarctic glacial history from numerical models and continental margin sediments

USGS Publications Warehouse

Barker, P.F.; Barrett, P.J.; Cooper, A. K.; Huybrechts, P.

1999-01-01

The climate record of glacially transported sediments in prograded wedges around the Antarctic outer continental shelf, and their derivatives in continental rise drifts, may be combined to produce an Antarctic ice sheet history, using numerical models of ice sheet response to temperature and sea-level change. Examination of published models suggests several preliminary conclusions about ice sheet history. The ice sheet's present high sensitivity to sea-level change at short (orbital) periods was developed gradually as its size increased, replacing a declining sensitivity to temperature. Models suggest that the ice sheet grew abruptly to 40% (or possibly more) of its present size at the Eocene-Oligocene boundary, mainly as a result of its own temperature sensitivity. A large but more gradual middle Miocene change was externally driven, probably by development of the Antarctic Circumpolar Current (ACC) and Polar Front, provided that a few million years' delay can be explained. The Oligocene ice sheet varied considerably in size and areal extent, but the late Miocene ice sheet was more stable, though significantly warmer than today's. This difference probably relates to the confining effect of the Antarctic continental margin. Present-day numerical models of ice sheet development are sufficient to guide current sampling plans, but sea-ice formation, polar wander, basal topography and ice streaming can be identified as factors meriting additional modelling effort in the future.

Analytical and numerical studies of photo-injected charge transport in molecularly-doped polymers

NASA Astrophysics Data System (ADS)

Roy Chowdhury, Amrita

The mobility of photo-injected charge carriers in molecularly-doped polymers (MDPs) exhibits a commonly observed, and nearly universal Poole-Frenkel field dependence, mu exp√(beta0E), that has been shown to arise from the correlated Gaussian energy distribution of transport sites encountered by charges undergoing hopping transport through the material. Analytical and numerical studies of photo-injected charge transport in these materials are presented here with an attempt to understand how specific features of the various models developed to describe these systems depend on the microscopic parameters that define them. Specifically, previously published time-of-flight mobility data for the molecularly doped polymer 30% DEH:PC (polycarbonate doped with 30 wt.% aromatic hydrazone DEH) is compared with direct analytical and numerical predictions of five disorder-based models, the Gaussian disorder model (GDM) of Bassler, and four correlated disorder models introduced by Novikov, et al., and by Parris, et al. In these numerical studies, disorder parameters describing each model were varied from reasonable starting conditions, in order to give the best overall fit. The uncorrelated GDM describes the Poole-Frenkel field dependence of the mobility only at very high fields, but fails for fields lower than about 64 V/mum. The correlated disorder models with small amounts of geometrical disorder do a good over-all job of reproducing a robust Poole-Frenkel field dependence, with correlated disorder theories that employ polaron transition rates showing qualitatively better agreement with experiment than those that employ Miller-Abrahams rates. In a separate study, the heuristic treatment of spatial or geometric disorder incorporated in existing theories is critiqued, and a randomly-diluted lattice gas model is developed to describe the spatial disorder of the transport sites in a more realistic way.

Final Report: A Transport Phenomena Based Approach to Probe Evolution of Weld Macro and Microstructures and A Smart Bi-directional Model of Fusion Welding

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dr. Tarasankar DebRoy

In recent years, applications of numerical heat transfer and fluid flow models of fusion welding have resulted in improved understanding of both the welding processes and welded materials. They have been used to accurately calculate thermal cycles and fusion zone geometry in many cases. Here we report the following three major advancements from this project. First, we show how microstructures, grain size distribution and topology of welds of several important engineering alloys can be computed starting from better understanding of the fusion welding process through numerical heat transfer and fluid flow calculations. Second, we provide a conclusive proof that themore » reliability of numerical heat transfer and fluid flow calculations can be significantly improved by optimizing several uncertain model parameters. Third, we demonstrate how the numerical heat transfer and fluid flow models can be combined with a suitable global optimization program such as a genetic algorithm for the tailoring of weld attributes such as attaining a specified weld geometry or a weld thermal cycle. The results of the project have been published in many papers and a listing of these are included together with a list of the graduate thesis that resulted from this project. The work supported by the DOE award has resulted in several important national and international awards. A listing of these awards and the status of the graduate students are also presented in this report.« less

Numerical simulation of jet aerodynamics using the three-dimensional Navier-Stokes code PAB3D

NASA Technical Reports Server (NTRS)

Pao, S. Paul; Abdol-Hamid, Khaled S.

1996-01-01

This report presents a unified method for subsonic and supersonic jet analysis using the three-dimensional Navier-Stokes code PAB3D. The Navier-Stokes code was used to obtain solutions for axisymmetric jets with on-design operating conditions at Mach numbers ranging from 0.6 to 3.0, supersonic jets containing weak shocks and Mach disks, and supersonic jets with nonaxisymmetric nozzle exit geometries. This report discusses computational methods, code implementation, computed results, and comparisons with available experimental data. Very good agreement is shown between the numerical solutions and available experimental data over a wide range of operating conditions. The Navier-Stokes method using the standard Jones-Launder two-equation kappa-epsilon turbulence model can accurately predict jet flow, and such predictions are made without any modification to the published constants for the turbulence model.

A numerical model for boiling heat transfer coefficient of zeotropic mixtures

NASA Astrophysics Data System (ADS)

Barraza Vicencio, Rodrigo; Caviedes Aedo, Eduardo

2017-12-01

Zeotropic mixtures never have the same liquid and vapor composition in the liquid-vapor equilibrium. Also, the bubble and the dew point are separated; this gap is called glide temperature (Tglide). Those characteristics have made these mixtures suitable for cryogenics Joule-Thomson (JT) refrigeration cycles. Zeotropic mixtures as working fluid in JT cycles improve their performance in an order of magnitude. Optimization of JT cycles have earned substantial importance for cryogenics applications (e.g, gas liquefaction, cryosurgery probes, cooling of infrared sensors, cryopreservation, and biomedical samples). Heat exchangers design on those cycles is a critical point; consequently, heat transfer coefficient and pressure drop of two-phase zeotropic mixtures are relevant. In this work, it will be applied a methodology in order to calculate the local convective heat transfer coefficients based on the law of the wall approach for turbulent flows. The flow and heat transfer characteristics of zeotropic mixtures in a heated horizontal tube are investigated numerically. The temperature profile and heat transfer coefficient for zeotropic mixtures of different bulk compositions are analysed. The numerical model has been developed and locally applied in a fully developed, constant temperature wall, and two-phase annular flow in a duct. Numerical results have been obtained using this model taking into account continuity, momentum, and energy equations. Local heat transfer coefficient results are compared with available experimental data published by Barraza et al. (2016), and they have shown good agreement.

Comparison of numerical and experimental results of the flow in the U9 Kaplan turbine model

NASA Astrophysics Data System (ADS)

Petit, O.; Mulu, B.; Nilsson, H.; Cervantes, M.

2010-08-01

The present work compares simulations made using the OpenFOAM CFD code with experimental measurements of the flow in the U9 Kaplan turbine model. Comparisons of the velocity profiles in the spiral casing and in the draft tube are presented. The U9 Kaplan turbine prototype located in Porjus and its model, located in Älvkarleby, Sweden, have curved inlet pipes that lead the flow to the spiral casing. Nowadays, this curved pipe and its effect on the flow in the turbine is not taken into account when numerical simulations are performed at design stage. To study the impact of the inlet pipe curvature on the flow in the turbine, and to get a better overview of the flow of the whole system, measurements were made on the 1:3.1 model of the U9 turbine. Previously published measurements were taken at the inlet of the spiral casing and just before the guide vanes, using the laser Doppler anemometry (LDA) technique. In the draft tube, a number of velocity profiles were measured using the LDA techniques. The present work extends the experimental investigation with a horizontal section at the inlet of the draft tube. The experimental results are used to specify the inlet boundary condition for the numerical simulations in the draft tube, and to validate the computational results in both the spiral casing and the draft tube. The numerical simulations were realized using the standard k-e model and a block-structured hexahedral wall function mesh.

Injury representation against ballistic threats using three novel numerical models.

PubMed

Breeze, Johno; Fryer, R; Pope, D; Clasper, J

2017-06-01

Injury modelling of ballistic threats is a valuable tool for informing policy on personal protective equipment and other injury mitigation methods. Currently, the Ministry of Defence (MoD) and Centre for Protection of National Infrastructure (CPNI) are focusing on the development of three interlinking numerical models, each of a different fidelity, to answer specific questions on current threats. High-fidelity models simulate the physical events most realistically, and will be used in the future to test the medical effectiveness of personal armour systems. They are however generally computationally intensive, slow running and much of the experimental data to base their algorithms on do not yet exist. Medium fidelity models, such as the personnel vulnerability simulation (PVS), generally use algorithms based on physical or engineering estimations of interaction. This enables a reasonable representation of reality and greatly speeds up runtime allowing full assessments of the entire body area to be undertaken. Low-fidelity models such as the human injury predictor (HIP) tool generally use simplistic algorithms to make injury predictions. Individual scenarios can be run very quickly and hence enable statistical casualty assessments of large groups, where significant uncertainty concerning the threat and affected population exist. HIP is used to simulate the blast and penetrative fragmentation effects of a terrorist detonation of an improvised explosive device within crowds of people in metropolitan environments. This paper describes the collaboration between MoD and CPNI using an example of all three fidelities of injury model and to highlight future areas of research that are required. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/.

Mathematical modeling and numerical simulation of the mitotic spindle orientation system.

PubMed

Ibrahim, Bashar

2018-05-21

The mitotic spindle orientation and position is crucial for the fidelity of chromosome segregation during asymmetric cell division to generate daughter cells with different sizes or fates. This mechanism is best understood in the budding yeast Saccharomyces cerevisiae, named the spindle position checkpoint (SPOC). The SPOC inhibits cells from exiting mitosis until the mitotic spindle is properly oriented along the mother-daughter polarity axis. Despite many experimental studies, the mechanisms underlying SPOC regulation remains elusive and unexplored theoretically. Here, a minimal mathematical is developed to describe SPOC activation and silencing having autocatalytic feedback-loop. Numerical simulations of the nonlinear ordinary differential equations (ODEs) model accurately reproduce the phenotype of SPOC mechanism. Bifurcation analysis of the nonlinear ODEs reveals the orientation dependency on spindle pole bodies, and how this dependence is altered by parameter values. These results provide for systems understanding on the molecular organization of spindle orientation system via mathematical modeling. The presented mathematical model is easy to understand and, within the above mentioned context, can be used as a base for further development of quantitative models in asymmetric cell-division. Copyright © 2018. Published by Elsevier Inc.

Finite element models of the human shoulder complex: a review of their clinical implications and modelling techniques.

PubMed

Zheng, Manxu; Zou, Zhenmin; Bartolo, Paulo Jorge Da Silva; Peach, Chris; Ren, Lei

2017-02-01

The human shoulder is a complicated musculoskeletal structure and is a perfect compromise between mobility and stability. The objective of this paper is to provide a thorough review of previous finite element (FE) studies in biomechanics of the human shoulder complex. Those FE studies to investigate shoulder biomechanics have been reviewed according to the physiological and clinical problems addressed: glenohumeral joint stability, rotator cuff tears, joint capsular and labral defects and shoulder arthroplasty. The major findings, limitations, potential clinical applications and modelling techniques of those FE studies are critically discussed. The main challenges faced in order to accurately represent the realistic physiological functions of the shoulder mechanism in FE simulations involve (1) subject-specific representation of the anisotropic nonhomogeneous material properties of the shoulder tissues in both healthy and pathological conditions; (2) definition of boundary and loading conditions based on individualised physiological data; (3) more comprehensive modelling describing the whole shoulder complex including appropriate three-dimensional (3D) representation of all major shoulder hard tissues and soft tissues and their delicate interactions; (4) rigorous in vivo experimental validation of FE simulation results. Fully validated shoulder FE models would greatly enhance our understanding of the aetiology of shoulder disorders, and hence facilitate the development of more efficient clinical diagnoses, non-surgical and surgical treatments, as well as shoulder orthotics and prosthetics. © 2016 The Authors. International Journal for Numerical Methods in Biomedical Engineering published by John Wiley & Sons Ltd. © 2016 The Authors. International Journal for Numerical Methods in Biomedical Engineering published by John Wiley & Sons Ltd.

Development of a radial ventricular assist device using numerical predictions and experimental haemolysis.

PubMed

Carswell, Dave; Hilton, Andy; Chan, Chris; McBride, Diane; Croft, Nick; Slone, Avril; Cross, Mark; Foster, Graham

2013-08-01

The objective of this study was to demonstrate the potential of Computational Fluid Dynamics (CFD) simulations in predicting the levels of haemolysis in ventricular assist devices (VADs). Three different prototypes of a radial flow VAD have been examined experimentally and computationally using CFD modelling to assess device haemolysis. Numerical computations of the flow field were computed using a CFD model developed with the use of the commercial software Ansys CFX 13 and a set of custom haemolysis analysis tools. Experimental values for the Normalised Index of Haemolysis (NIH) have been calculated as 0.020 g/100 L, 0.014 g/100 L and 0.0042 g/100 L for the three designs. Numerical analysis predicts an NIH of 0.021 g/100 L, 0.017 g/100 L and 0.0057 g/100 L, respectively. The actual differences between experimental and numerical results vary between 0.0012 and 0.003 g/100 L, with a variation of 5% for Pump 1 and slightly larger percentage differences for the other pumps. The work detailed herein demonstrates how CFD simulation and, more importantly, the numerical prediction of haemolysis may be used as an effective tool in order to help the designers of VADs manage the flow paths within pumps resulting in a less haemolytic device. Copyright © 2013 IPEM. Published by Elsevier Ltd. All rights reserved.

Development of a Process Signature for Manufacturing Processes with Thermal Loads

NASA Astrophysics Data System (ADS)

Frerichs, Friedhelm; Meyer, Heiner; Strunk, Rebecca; Kolkwitz, Benjamin; Epp, Jeremy

2018-06-01

The newly proposed concept of Process Signatures enables the comparison of seemingly different manufacturing processes via a process-independent approach based on the analysis of the loading condition and resulting material modification. This contribution compares the recently published results, based on numerically achieved data for the development of Process Signatures for sole surface and volume heatings without phase transformations, with the experimental data. The numerical approach applies the moving heat source theory in combination with energetic quantities. The external thermal loadings of both processes were characterized by the resulting temperature development, which correlates with a change in the residual stress state. The numerical investigations show that surface and volume heatings are interchangeable for certain parameter regimes regarding the changes in the residual stress state. Mainly, temperature gradients and thermal diffusion are responsible for the considered modifications. The applied surface- and volume-heating models are used in shallow cut grinding and induction heating, respectively. The comparison of numerical and experimental data reveals similarities, but also some systematic deviations of the residual stresses at the surface. The evaluation and final discussion support the assertion for very fast stress relaxation processes within the subsurface region. A consequence would be that the stress relaxation processes, which are not yet included in the numerical models, must be included in the Process Signatures for sole thermal impacts.

Diffusion approximation-based simulation of stochastic ion channels: which method to use?

PubMed Central

Pezo, Danilo; Soudry, Daniel; Orio, Patricio

2014-01-01

To study the effects of stochastic ion channel fluctuations on neural dynamics, several numerical implementation methods have been proposed. Gillespie's method for Markov Chains (MC) simulation is highly accurate, yet it becomes computationally intensive in the regime of a high number of channels. Many recent works aim to speed simulation time using the Langevin-based Diffusion Approximation (DA). Under this common theoretical approach, each implementation differs in how it handles various numerical difficulties—such as bounding of state variables to [0,1]. Here we review and test a set of the most recently published DA implementations (Goldwyn et al., 2011; Linaro et al., 2011; Dangerfield et al., 2012; Orio and Soudry, 2012; Schmandt and Galán, 2012; Güler, 2013; Huang et al., 2013a), comparing all of them in a set of numerical simulations that assess numerical accuracy and computational efficiency on three different models: (1) the original Hodgkin and Huxley model, (2) a model with faster sodium channels, and (3) a multi-compartmental model inspired in granular cells. We conclude that for a low number of channels (usually below 1000 per simulated compartment) one should use MC—which is the fastest and most accurate method. For a high number of channels, we recommend using the method by Orio and Soudry (2012), possibly combined with the method by Schmandt and Galán (2012) for increased speed and slightly reduced accuracy. Consequently, MC modeling may be the best method for detailed multicompartment neuron models—in which a model neuron with many thousands of channels is segmented into many compartments with a few hundred channels. PMID:25404914

Estimation of Anaerobic Debromination Rate Constants of PBDE Pathways Using an Anaerobic Dehalogenation Model.

PubMed

Karakas, Filiz; Imamoglu, Ipek

2017-04-01

This study aims to estimate anaerobic debromination rate constants (k m ) of PBDE pathways using previously reported laboratory soil data. k m values of pathways are estimated by modifying a previously developed model as Anaerobic Dehalogenation Model. Debromination activities published in the literature in terms of bromine substitutions as well as specific microorganisms and their combinations are used for identification of pathways. The range of estimated k m values is between 0.0003 and 0.0241 d -1 . The median and maximum of k m values are found to be comparable to the few available biologically confirmed rate constants published in the literature. The estimated k m values can be used as input to numerical fate and transport models for a better and more detailed investigation of the fate of individual PBDEs in contaminated sediments. Various remediation scenarios such as monitored natural attenuation or bioremediation with bioaugmentation can be handled in a more quantitative manner with the help of k m estimated in this study.

Modeling of nonequilibrium space plasma flows

NASA Technical Reports Server (NTRS)

Gombosi, Tamas

1995-01-01

Godunov-type numerical solution of the 20 moment plasma transport equations. One of the centerpieces of our proposal was the development of a higher order Godunov-type numerical scheme to solve the gyration dominated 20 moment transport equations. In the first step we explored some fundamental analytic properties of the 20 moment transport equations for a low b plasma, including the eigenvectors and eigenvalues of propagating disturbances. The eigenvalues correspond to wave speeds, while the eigenvectors characterize the transported physical quantities. In this paper we also explored the physically meaningful parameter range of the normalized heat flow components. In the second step a new Godunov scheme type numerical method was developed to solve the coupled set of 20 moment transport equations for a quasineutral single-ion plasma. The numerical method and the first results were presented at several national and international meetings and a paper describing the method has been published in the Journal of Computational Physics. To our knowledge this is the first numerical method which is capable of producing stable time-dependent solutions to the full 20 (or 16) moment set of transport equations, including the full heat flow equation. Previous attempts resulted in unstable (oscillating) solutions of the heat flow equations. Our group invested over two man-years into the development and implementation of the new method. The present model solves the 20 moment transport equations for an ion species and thermal electrons in 8 domain extending from a collision dominated to a collisionless region (200 km to 12,000 km). This model has been applied to study O+ acceleration due to Joule heating in the lower ionosphere.

Leading temperature dependence of the conductance in Kondo-correlated quantum dots.

PubMed

Aligia, A A

2018-04-18

Using renormalized perturbation theory in the Coulomb repulsion, we derive an analytical expression for the leading term in the temperature dependence of the conductance through a quantum dot described by the impurity Anderson model, in terms of the renormalized parameters of the model. Taking these parameters from the literature, we compare the results with published ones calculated using the numerical renormalization group obtaining a very good agreement. The approach is superior to alternative perturbative treatments. We compare in particular to the results of a simple interpolative perturbation approach.

Light deflection in gadolinium molybdate ferroelastic crystals

NASA Astrophysics Data System (ADS)

Staniorowski, Piotr; Bornarel, Jean

2000-02-01

The deflection of a He-Ne light beam by polydomain gadolinium molybdate (GMO) crystals has been studied with respect to incidence angle icons/Journals/Common/alpha" ALT="alpha" ALIGN="TOP"/> i on the sample at room temperature. The A and B deflected beams do not cross each other during the icons/Journals/Common/alpha" ALT="alpha" ALIGN="TOP"/> i variation, in contrast to results and calculations previously published. The model using the Fresnel equation confirms this result. The model presented is more accurate for numerical calculation than that using the Huygens construction.

On the mechanical stability of porous coated press fit titanium implants: a finite element study of a pushout test.

PubMed

Helgason, Benedikt; Viceconti, Marco; Rúnarsson, Tómas P; Brynjólfsson, Sigurour

2008-01-01

Pushout tests can be used to estimate the shear strength of the bone implant interface. Numerous such experimental studies have been published in the literature. Despite this researchers are still some way off with respect to the development of accurate numerical models to simulate implant stability. In the present work a specific experimental pushout study from the literature was simulated using two different bones implant interface models. The implant was a porous coated Ti-6Al-4V retrieved 4 weeks postoperatively from a dog model. The purpose was to find out which of the interface models could replicate the experimental results using physically meaningful input parameters. The results showed that a model based on partial bone ingrowth (ingrowth stability) is superior to an interface model based on friction and prestressing due to press fit (initial stability). Even though the present study is limited to a single experimental setup, the authors suggest that the presented methodology can be used to investigate implant stability from other experimental pushout models. This would eventually enhance the much needed understanding of the mechanical response of the bone implant interface and help to quantify how implant stability evolves with time.

Multi-scale and Multi-physics Numerical Methods for Modeling Transport in Mesoscopic Systems

DTIC Science & Technology

2014-10-13

function and wide band Fast multipole methods for Hankel waves. (2) a new linear scaling discontinuous Galerkin density functional theory, which provide a...inflow boundary condition for Wigner quantum transport equations. Also, a book titled "Computational Methods for Electromagnetic Phenomena...equationsin layered media with FMM for Bessel functions , Science China Mathematics, (12 2013): 2561. doi: TOTAL: 6 Number of Papers published in peer

[On the extinction of populations with several types in a random environment].

PubMed

Bacaër, Nicolas

2018-03-01

This study focuses on the extinction rate of a population that follows a continuous-time multi-type branching process in a random environment. Numerical computations in a particular example inspired by an epidemic model suggest an explicit formula for this extinction rate, but only for certain parameter values. Copyright © 2018 Académie des sciences. Published by Elsevier Masson SAS. All rights reserved.

The number processing and calculation system: evidence from cognitive neuropsychology.

PubMed

Salguero-Alcañiz, M P; Alameda-Bailén, J R

2015-04-01

Cognitive neuropsychology focuses on the concepts of dissociation and double dissociation. The performance of number processing and calculation tasks by patients with acquired brain injury can be used to characterise the way in which the healthy cognitive system manipulates number symbols and quantities. The objective of this study is to determine the components of the numerical processing and calculation system. Participants consisted of 6 patients with acquired brain injuries in different cerebral localisations. We used Batería de evaluación del procesamiento numérico y el cálculo, a battery assessing number processing and calculation. Data was analysed using the difference in proportions test. Quantitative numerical knowledge is independent from number transcoding, qualitative numerical knowledge, and calculation. Recodification is independent from qualitative numerical knowledge and calculation. Quantitative numerical knowledge and calculation are also independent functions. The number processing and calculation system comprises at least 4 components that operate independently: quantitative numerical knowledge, number transcoding, qualitative numerical knowledge, and calculation. Therefore, each one may be damaged selectively without affecting the functioning of another. According to the main models of number processing and calculation, each component has different characteristics and cerebral localisations. Copyright © 2013 Sociedad Española de Neurología. Published by Elsevier Espana. All rights reserved.

A numerical performance assessment of a commercial cardiopulmonary by-pass blood heat exchanger.

PubMed

Consolo, Filippo; Fiore, Gianfranco B; Pelosi, Alessandra; Reggiani, Stefano; Redaelli, Alberto

2015-06-01

We developed a numerical model, based on multi-physics computational fluid dynamics (CFD) simulations, to assist the design process of a plastic hollow-fiber bundle blood heat exchanger (BHE) integrated within the INSPIRE(TM), a blood oxygenator (OXY) for cardiopulmonary by-pass procedures, recently released by Sorin Group Italia. In a comparative study, we analyzed five different geometrical design solutions of the BHE module. Quantitative geometrical-dependent parameters providing a comprehensive evaluation of both the hemo- and thermo-dynamics performance of the device were extracted to identify the best-performing prototypical solution. A convenient design configuration was identified, characterized by (i) a uniform blood flow pattern within the fiber bundle, preventing blood flow shunting and the onset of stagnation/recirculation areas and/or high velocity pathways, (ii) an enhanced blood heating efficiency, and (iii) a reduced blood pressure drop. The selected design configuration was then prototyped and tested to experimentally characterize the device performance. Experimental results confirmed numerical predictions, proving the effectiveness of CFD modeling as a reliable tool for in silico identification of suitable working conditions of blood handling medical devices. Notably, the numerical approach limited the need for extensive prototyping, thus reducing the corresponding machinery costs and time-to-market. Copyright © 2015 IPEM. Published by Elsevier Ltd. All rights reserved.

Finite element modelling for mode-I fracture behaviour of CFRP

NASA Astrophysics Data System (ADS)

Chetan, H. C.; Kattimani, Subhaschandra; Murigendrappa, S. M.

2018-04-01

Debonding is a major failure mechanism in Carbon Fiber Reinforced Polymer (CFRP) due to presence of many adhesion joins, in between many layers. In the current study a finite element simulation is carried out using Virtual Crack Closure Technique (VCCT) and Cohesive Zone Modelling (CZM) using Abaqus as analysis tool. A comparative study is performed in to order analyze convergence of results from CZM and VCCT. It was noted that CZM results matched well with published literature. The results from VCCT were also in good comparison with experimental data of published literature, but were seen to be overestimated. Parametric study is performed to evaluate the variation of input parameters like initial stiffness, element size, peak stress and energy release rate `G'. From the numerical evaluation, it was noted that CZM simulation relies largely on element size and peak stress.

Models for the rise of the dinosaurs.

PubMed

Benton, Michael J; Forth, Jonathan; Langer, Max C

2014-01-20

Dinosaurs arose in the early Triassic in the aftermath of the greatest mass extinction ever and became hugely successful in the Mesozoic. Their initial diversification is a classic example of a large-scale macroevolutionary change. Diversifications at such deep-time scales can now be dissected, modelled and tested. New fossils suggest that dinosaurs originated early in the Middle Triassic, during the recovery of life from the devastating Permo-Triassic mass extinction. Improvements in stratigraphic dating and a new suite of morphometric and comparative evolutionary numerical methods now allow a forensic dissection of one of the greatest turnovers in the history of life. Such studies mark a move from the narrative to the analytical in macroevolutionary research, and they allow us to begin to answer the proposal of George Gaylord Simpson, to explore adaptive radiations using numerical methods. Copyright © 2014 The Authors. Published by Elsevier Inc. All rights reserved.

Revisiting the factors which control the angle of shear bands in geodynamic numerical models of brittle deformation

NASA Astrophysics Data System (ADS)

Thieulot, Cedric

2017-04-01

In this work I present Finite Element numerical simulations of brittle deformation in two-dimensional Cartesian systems subjected to compressional or extensional kinematical boundary conditions with a basal velocity discontinuity. The rheology is visco-plastic and is characterised by a cohesion and an angle of internal friction (Drucker-Prager type). I will explore the influence of the following factors on the recovered shear band angles when the angle of internal friction is varied: a) element type (quadrilateral vs triangle), b) element order, c) continuous vs discontinous pressure, d) visco-plasticity model implementation, e) the nonlinear tolerance value, f) the use of markers, g) Picard vs Newton-Raphson, h) velocity discontinuity nature. I will present these results in the light of already published literature (e.g. Lemiale et al, PEPI 171, 2008; Kaus, Tectonophysics 484, 2010).

Scale Rules for Macrosegregation during Direct-Chill Casting of Aluminum Alloys

NASA Astrophysics Data System (ADS)

Eskin, Dmitry G.; Du, Qiang; Katgerman, Laurens

2008-05-01

An analysis of published experimental and numerical results shows that there is a scaling relationship between the magnitude and direction of centerline segregation in direct-chill (DC) cast billets from aluminum alloys and the process parameters, i.e., billet diameter and casting speed. It seems that there is always a range of these process parameters where the centerline segregation is positive, and there is a threshold when the centerline segregation vanishes. Numerical simulations of macrosegregation during DC casting of a binary Al-Cu alloy were performed at different ratios of casting speed and billet diameter. The macrosegregation model takes into account only two mechanisms of macrosegregation, i.e., thermosolutal convection and shrinkage-induced flow. The results of these computer simulations fit well to the dependence obtained using numerous reference data. The results are discussed in terms of the contribution of different mechanisms of macrosegregation and the shape of the billet sump.

Multi-dimensional rheology-based two-phase model for sediment transport and applications to sheet flow and pipeline scour

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lee, Cheng-Hsien; Department of Water Resources and Environmental Engineering, Tamkang University, New Taipei City 25137, Taiwan; Low, Ying Min, E-mail: ceelowym@nus.edu.sg

2016-05-15

Sediment transport is fundamentally a two-phase phenomenon involving fluid and sediments; however, many existing numerical models are one-phase approaches, which are unable to capture the complex fluid-particle and inter-particle interactions. In the last decade, two-phase models have gained traction; however, there are still many limitations in these models. For example, several existing two-phase models are confined to one-dimensional problems; in addition, the existing two-dimensional models simulate only the region outside the sand bed. This paper develops a new three-dimensional two-phase model for simulating sediment transport in the sheet flow condition, incorporating recently published rheological characteristics of sediments. The enduring-contact, inertial,more » and fluid viscosity effects are considered in determining sediment pressure and stresses, enabling the model to be applicable to a wide range of particle Reynolds number. A k − ε turbulence model is adopted to compute the Reynolds stresses. In addition, a novel numerical scheme is proposed, thus avoiding numerical instability caused by high sediment concentration and allowing the sediment dynamics to be computed both within and outside the sand bed. The present model is applied to two classical problems, namely, sheet flow and scour under a pipeline with favorable results. For sheet flow, the computed velocity is consistent with measured data reported in the literature. For pipeline scour, the computed scour rate beneath the pipeline agrees with previous experimental observations. However, the present model is unable to capture vortex shedding; consequently, the sediment deposition behind the pipeline is overestimated. Sensitivity analyses reveal that model parameters associated with turbulence have strong influence on the computed results.« less

Control of rift asymmetry and segmentation on the thermal architecture of hyperextended rift systems: insights from Pyrenean field observations and numerical modelling

NASA Astrophysics Data System (ADS)

Lescoutre, Rodolphe; Tugend, Julie; Brune, Sascha; Manatschal, Gianreto

2017-04-01

Mid-Cretaceous rift basins are exposed in the Pyrenees providing key information on rifted domain formation that is not available at present-day rift system. Substantial paleotemperature and thermochronological data have been collected and published in numerous recent papers. These data show a strong heterogeneity in the distribution of peak temperatures within the Cretaceous rift basins. Locations that experienced relatively high or low temperatures appear to cluster in specific areas along strike. These areas have been interpreted as either reflecting hot and cold conditions during rifting, or alternatively, a change in the polarity of a strongly asymmetric rift systems. In this study, we test if the observed variability of peak temperatures can be explained by segmentation and a change in polarity of an asymmetrical upper/lower plate rift model. To this aim we restore the observed syn- to early post-rift peak temperatures to their paleo-location within sections across the evolving rift system. In the meantime, we conduct numerical models of rift migration leading to asymmetrical extension that are benchmarked with geological and geophysical observations from the Pyrenees. From the models, we extract thermal information at different stages of rifting that are finally compared to the thermal data from the Pyrenean Cretaceous rift basins. This work employs a novel approach by comparing thermal output from numerical modelling with the distribution of peak temperatures and thermal gradient from field data. As such, these results may have substantial implications to further understand the pre-orogenic thermal evolution of the Pyrenean rift system and the role of segmentation. More generally, the results of this work may unravel the role of rift asymmetry and segmentation on the thermal architecture of hyperextended rift basins and margins.

Numerical modelling of ultrasonic waves in a bubbly Newtonian liquid using a high-order acoustic cavitation model.

PubMed

Lebon, G S Bruno; Tzanakis, I; Djambazov, G; Pericleous, K; Eskin, D G

2017-07-01

To address difficulties in treating large volumes of liquid metal with ultrasound, a fundamental study of acoustic cavitation in liquid aluminium, expressed in an experimentally validated numerical model, is presented in this paper. To improve the understanding of the cavitation process, a non-linear acoustic model is validated against reference water pressure measurements from acoustic waves produced by an immersed horn. A high-order method is used to discretize the wave equation in both space and time. These discretized equations are coupled to the Rayleigh-Plesset equation using two different time scales to couple the bubble and flow scales, resulting in a stable, fast, and reasonably accurate method for the prediction of acoustic pressures in cavitating liquids. This method is then applied to the context of treatment of liquid aluminium, where it predicts that the most intense cavitation activity is localised below the vibrating horn and estimates the acoustic decay below the sonotrode with reasonable qualitative agreement with experimental data. Copyright © 2017 The Author(s). Published by Elsevier B.V. All rights reserved.

Performance testing of coagulants to reduce stormwater runoff turbidity.

DOT National Transportation Integrated Search

2014-05-01

On December 1, 2009, the US Environmental Protection Agency (EPA) published a rule in the Federal : Register establishing non-numeric and, for the first time, numeric effluent limitation guidelines (ELGs). The : numeric ELGs included a turbidity limi...

Analysis and calculation of macrosegregation in a casting ingot. MPS solidification model. Volume 1: Formulation and analysis

NASA Technical Reports Server (NTRS)

Maples, A. L.; Poirier, D. R.

1980-01-01

The physical and numerical formulation of a model for the horizontal solidification of a binary alloy is described. It can be applied in an ingot. The major purpose of the model is to calculate macrosegregation in a casting ingot which results from flow of interdendritic liquid during solidification. The flow, driven by solidification contractions and by gravity acting on density gradients in the interdendritic liquid, was modeled as flow through a porous medium. The symbols used are defined. The physical formulation of the problem leading to a set of equations which can be used to obtain: (1) the pressure field; (2) the velocity field: (3) mass flow and (4) solute flow in the solid plus liquid zone during solidification is presented. With these established, the model calculates macrosegregation after solidification is complete. The numerical techniques used to obtain solution on a computational grid are presented. Results, evaluation of the results, and recommendations for future development of the model are given. The macrosegregation and flow field predictions for tin-lead, aluminum-copper, and tin-bismuth alloys are included as well as comparisons of some of the predictions with published predictions or with empirical data.

Increasing horizontal resolution in numerical weather prediction and climate simulations: illusion or panacea?

PubMed

Wedi, Nils P

2014-06-28

The steady path of doubling the global horizontal resolution approximately every 8 years in numerical weather prediction (NWP) at the European Centre for Medium Range Weather Forecasts may be substantially altered with emerging novel computing architectures. It coincides with the need to appropriately address and determine forecast uncertainty with increasing resolution, in particular, when convective-scale motions start to be resolved. Blunt increases in the model resolution will quickly become unaffordable and may not lead to improved NWP forecasts. Consequently, there is a need to accordingly adjust proven numerical techniques. An informed decision on the modelling strategy for harnessing exascale, massively parallel computing power thus also requires a deeper understanding of the sensitivity to uncertainty--for each part of the model--and ultimately a deeper understanding of multi-scale interactions in the atmosphere and their numerical realization in ultra-high-resolution NWP and climate simulations. This paper explores opportunities for substantial increases in the forecast efficiency by judicious adjustment of the formal accuracy or relative resolution in the spectral and physical space. One path is to reduce the formal accuracy by which the spectral transforms are computed. The other pathway explores the importance of the ratio used for the horizontal resolution in gridpoint space versus wavenumbers in spectral space. This is relevant for both high-resolution simulations as well as ensemble-based uncertainty estimation. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

The effect of a realistic thermal diffusivity on numerical model of a subducting slab

NASA Astrophysics Data System (ADS)

Maierova, P.; Steinle-Neumann, G.; Cadek, O.

2010-12-01

A number of numerical studies of subducting slab assume simplified (constant or only depth-dependent) models of thermal conductivity. The available mineral physics data indicate, however, that thermal diffusivity is strongly temperature- and pressure-dependent and may also vary among different mantle materials. In the present study, we examine the influence of realistic thermal properties of mantle materials on the thermal state of the upper mantle and the dynamics of subducting slabs. On the basis of the data published in mineral physics literature we compile analytical relationships that approximate the pressure and temperature dependence of thermal diffusivity for major mineral phases of the mantle (olivine, wadsleyite, ringwoodite, garnet, clinopyroxenes, stishovite and perovskite). We propose a simplified composition of mineral assemblages predominating in the subducting slab and the surrounding mantle (pyrolite, mid-ocean ridge basalt, harzburgite) and we estimate their thermal diffusivity using the Hashin-Shtrikman bounds. The resulting complex formula for the diffusivity of each aggregate is then approximated by a simpler analytical relationship that is used in our numerical model as an input parameter. For the numerical modeling we use the Elmer software (open source finite element software for multiphysical problems, see http://www.csc.fi/english/pages/elmer). We set up a 2D Cartesian thermo-mechanical steady-state model of a subducting slab. The model is partly kinematic as the flow is driven by a boundary condition on velocity that is prescribed on the top of the subducting lithospheric plate. Reology of the material is non-linear and is coupled with the thermal equation. Using the realistic relationship for thermal diffusivity of mantle materials, we compute the thermal and flow fields for different input velocity and age of the subducting plate and we compare the results against the models assuming a constant thermal diffusivity. The importance of the realistic description of thermal properties in models of subducted slabs is discussed.

The space-dependent model and output characteristics of intra-cavity pumped dual-wavelength lasers

NASA Astrophysics Data System (ADS)

He, Jin-Qi; Dong, Yuan; Zhang, Feng-Dong; Yu, Yong-Ji; Jin, Guang-Yong; Liu, Li-Da

2016-01-01

The intra-cavity pumping scheme which is used to simultaneously generate dual-wavelength lasers was proposed and published by us and the space-independent model of quasi-three-level and four-level intra-cavity pumped dual-wavelength lasers was constructed based on this scheme. In this paper, to make the previous study more rigorous, the space-dependent model is adopted. As an example, the output characteristics of 946 nm and 1064 nm dual-wavelength lasers under the conditions of different output mirror transmittances are numerically simulated by using the derived formula and the results are nearly identical to what was previously reported.

Numeric, Agent-based or System Dynamics Model? Which Modeling Approach is the Best for Vast Population Simulation?

PubMed

Cimler, Richard; Tomaskova, Hana; Kuhnova, Jitka; Dolezal, Ondrej; Pscheidl, Pavel; Kuca, Kamil

2018-01-01

Alzheimer's disease is one of the most common mental illnesses. It is posited that more than 25% of the population is affected by some mental disease during their lifetime. Treatment of each patient draws resources from the economy concerned. Therefore, it is important to quantify the potential economic impact. Agent-based, system dynamics and numerical approaches to dynamic modeling of the population of the European Union and its patients with Alzheimer's disease are presented in this article. Simulations, their characteristics, and the results from different modeling tools are compared. The results of these approaches are compared with EU population growth predictions from the statistical office of the EU by Eurostat. The methodology of a creation of the models is described and all three modeling approaches are compared. The suitability of each modeling approach for the population modeling is discussed. In this case study, all three approaches gave us the results corresponding with the EU population prediction. Moreover, we were able to predict the number of patients with AD and, based on the modeling method, we were also able to monitor different characteristics of the population. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

Standards and Guidelines for Numerical Models for Tsunami Hazard Mitigation

NASA Astrophysics Data System (ADS)

Titov, V.; Gonzalez, F.; Kanoglu, U.; Yalciner, A.; Synolakis, C. E.

2006-12-01

An increased number of nations around the workd need to develop tsunami mitigation plans which invariably involve inundation maps for warning guidance and evacuation planning. There is the risk that inundation maps may be produced with older or untested methodology, as there are currently no standards for modeling tools. In the aftermath of the 2004 megatsunami, some models were used to model inundation for Cascadia events with results much larger than sediment records and existing state-of-the-art studies suggest leading to confusion among emergency management. Incorrectly assessing tsunami impact is hazardous, as recent events in 2006 in Tonga, Kythira, Greece and Central Java have suggested (Synolakis and Bernard, 2006). To calculate tsunami currents, forces and runup on coastal structures, and inundation of coastlines one must calculate the evolution of the tsunami wave from the deep ocean to its target site, numerically. No matter what the numerical model, validation (the process of ensuring that the model solves the parent equations of motion accurately) and verification (the process of ensuring that the model used represents geophysical reality appropriately) both are an essential. Validation ensures that the model performs well in a wide range of circumstances and is accomplished through comparison with analytical solutions. Verification ensures that the computational code performs well over a range of geophysical problems. A few analytic solutions have been validated themselves with laboratory data. Even fewer existing numerical models have been both validated with the analytical solutions and verified with both laboratory measurements and field measurements, thus establishing a gold standard for numerical codes for inundation mapping. While there is in principle no absolute certainty that a numerical code that has performed well in all the benchmark tests will also produce correct inundation predictions with any given source motions, validated codes reduce the level of uncertainty in their results to the uncertainty in the geophysical initial conditions. Further, when coupled with real--time free--field tsunami measurements from tsunameters, validated codes are the only choice for realistic forecasting of inundation; the consequences of failure are too ghastly to take chances with numerical procedures that have not been validated. We discuss a ten step process of benchmark tests for models used for inundation mapping. The associated methodology and algorithmes have to first be validated with analytical solutions, then verified with laboratory measurements and field data. The models need to be published in the scientific literature in peer-review journals indexed by ISI. While this process may appear onerous, it reflects our state of knowledge, and is the only defensible methodology when human lives are at stake. Synolakis, C.E., and Bernard, E.N, Tsunami science before and beyond Boxing Day 2004, Phil. Trans. R. Soc. A 364 1845, 2231--2263, 2005.

Non-collinear Generation of Angularly Isolated Circularly Polarized High Harmonics

DTIC Science & Technology

2015-09-21

collinear HHG using both intuitive physical models as well as advanced numerical calculations. In the photon picture (Fig. 1b), we show that the NCP...Department of Physics , University of Colorado and NIST, Boulder, Colorado 80309, USA. 2Grupo de Investigación en Óptica Extrema, Universidad de... Physics , Colorado School of Mines, Golden, Colorado 80401, USA. *e-mail: danhickstein@gmail.com ARTICLES PUBLISHED ONLINE: 21 SEPTEMBER 2015 | DOI

The Doctor Is In! Diagnostic Analysis.

PubMed

Jupiter, Daniel C

To make meaningful inferences based on our regression models, we must ensure that we have met the necessary assumptions of these tests. In this commentary, we review these assumptions and those for the t-test and analysis of variance, and introduce a variety of methods, formal and informal, numeric and visual, for assessing conformity with the assumptions. Copyright © 2018 The American College of Foot and Ankle Surgeons. Published by Elsevier Inc. All rights reserved.

Cytogenetic landscape of paired neurospheres and traditional monolayer cultures in pediatric malignant brain tumors.

PubMed

Zhao, Xiumei; Zhao, Yi-Jue; Lin, Qi; Yu, Litian; Liu, Zhigang; Lindsay, Holly; Kogiso, Mari; Rao, Pulivarthi; Li, Xiao-Nan; Lu, Xinyan

2015-07-01

New therapeutic targets are needed to eliminate cancer stem cells (CSCs). We hypothesize that direct comparison of paired CSCs and nonstem tumor cells (NSTCs) will facilitate identification of primary "driver" chromosomal aberrations that can serve as diagnostic markers and/or therapeutic targets. We applied spectral karyotyping and G-banding to matched pairs of neurospheres (CSC-enriched cultures) and fetal bovine serum-based monolayer cultures (enriched with NSTCs) from 16 patient-derived orthotopic xenograft mouse models, including 9 medulloblastomas (MBs) and 7 high-grade gliomas (HGGs), followed by direct comparison of their numerical and structural abnormalities. Chromosomal aberrations were detected in neurospheres of all 16 models, and 82.0% numerical and 82.4% structural abnormalities were maintained in their matching monolayer cultures. Among the shared abnormalities, recurrent clonal changes were identified including gain of chromosomes 18 and 7 and loss of chromosome 10/10q (5/16 models), isochromosome 17q in 2 MBs, and a new breakpoint of 13q14 in 3 HGGs. Chromothripsis-like evidence was also observed in 3 HGG pairs. Additionally, we noted 20 numerical and 15 structural aberrations that were lost from the neurospheres and found 26 numerical and 23 structural aberrations that were only present in the NSTCs. Compared with MBs, the neurosphere karyotypes of HGG were more complex, with fewer chromosomal aberrations preserved in their matching NSTCs. Self-renewing CSCs in MBs and pediatric HGGs harbor recurrent numerical and structural aberrations that were maintained in the matching monolayer cultures. These primary chromosomal changes may represent new markers for anti-CSC therapies. © The Author(s) 2014. Published by Oxford University Press on behalf of the Society for Neuro-Oncology. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

An inverse approach to constraining strain and vorticity using rigid clast shape preferred orientation data

NASA Astrophysics Data System (ADS)

Davis, Joshua R.; Giorgis, Scott

2014-11-01

We describe a three-part approach for modeling shape preferred orientation (SPO) data of spheroidal clasts. The first part consists of criteria to determine whether a given SPO and clast shape are compatible. The second part is an algorithm for randomly generating spheroid populations that match a prescribed SPO and clast shape. In the third part, numerical optimization software is used to infer deformation from spheroid populations, by finding the deformation that returns a set of post-deformation spheroids to a minimally anisotropic initial configuration. Two numerical experiments explore the strengths and weaknesses of this approach, while giving information about the sensitivity of the model to noise in data. In monoclinic transpression of oblate rigid spheroids, the model is found to constrain the shortening component but not the simple shear component. This modeling approach is applied to previously published SPO data from the western Idaho shear zone, a monoclinic transpressional zone that deformed a feldspar megacrystic gneiss. Results suggest at most 5 km of shortening, as well as pre-deformation SPO fabric. The shortening estimate is corroborated by a second model that assumes no pre-deformation fabric.

Experimental and numerical study on particle distribution in a two-zone chamber

NASA Astrophysics Data System (ADS)

Lai, Alvin C. K.; Wang, K.; Chen, F. Z.

Better understanding of aerosol dynamics is an important step for improving personal exposure assessments in indoor environments. Although the limitation of the assumptions in a well-mixed model is well known, there has been very little research reported in the published literature on the discrepancy of exposure assessments between numerical models which take account of gravitational effects and the well-mixed model. A new Eulerian-type drift-flux model has been developed to simulate particle dispersion and personal exposure in a two-zone geometry, which accounts for the drift velocity resulting from gravitational settling and diffusion. To validate the numerical model, a small-scale chamber was fabricated. The airflow characteristics and particle concentrations were measured by a phase Doppler Anemometer. Both simulated airflow and concentration profiles agree well with the experimental results. A strong inhomogeneous concentration was observed experimentally for 10 μm aerosols. The computational model was further applied to study a simple hypothetical, yet more realistic scenario. The aim was to explore different levels of exposure predicted by the new model and the well-mixed model. Aerosols are initially uniformly distributed in one zone and subsequently transported and dispersed to an adjacent zone through an opening. Owing to the significant difference in the rates of transport and dispersion between aerosols and gases, inferred from the results, the well-mixed model tends to overpredict the concentration in the source zone, and under-predict the concentration in the exposed zone. The results are very useful to illustrate that the well-mixed assumption must be applied cautiously for exposure assessments as such an ideal condition may not be applied for coarse particles.

Linking internal and external bacterial community control gives mechanistic framework for pelagic virus-to-bacteria ratios.

PubMed

Våge, Selina; Pree, Bernadette; Thingstad, T Frede

2016-11-01

For more than 25 years, virus-to-bacteria ratios (VBR) have been measured and interpreted as indicators of the importance of viruses in aquatic ecosystems, yet a generally accepted theory for understanding mechanisms controlling VBR is still lacking. Assuming that the denominator (total bacterial abundance) is primarily predator controlled, while viral lysis compensates for host growth rates exceeding this grazing loss, the numerator (viral abundance) reflects activity differences between prokaryotic hosts. VBR is then a ratio between mechanisms generating structure within the bacterial community and interactions between different plankton functional types controlling bacterial community size. We here show how these arguments can be formalized by combining a recently published model for co-evolutionary host-virus interactions, with a previously published "minimum" model for the microbial food web. The result is a framework where viral lysis links bacterial diversity to microbial food web structure and function, creating relationships between different levels of organization that are strongly modified by organism-level properties such as cost of resistance. © 2016 The Authors. Environmental Microbiology Reports published by Society for Applied Microbiology and John Wiley & Sons Ltd.

Turbulence model sensitivity and scour gap effect of unsteady flow around pipe: a CFD study.

PubMed

Ali, Abbod; Sharma, R K; Ganesan, P; Akib, Shatirah

2014-01-01

A numerical investigation of incompressible and transient flow around circular pipe has been carried out at different five gap phases. Flow equations such as Navier-Stokes and continuity equations have been solved using finite volume method. Unsteady horizontal velocity and kinetic energy square root profiles are plotted using different turbulence models and their sensitivity is checked against published experimental results. Flow parameters such as horizontal velocity under pipe, pressure coefficient, wall shear stress, drag coefficient, and lift coefficient are studied and presented graphically to investigate the flow behavior around an immovable pipe and scoured bed.

Parameter Estimation and Model Validation of Nonlinear Dynamical Networks

DOE Office of Scientific and Technical Information (OSTI.GOV)

Abarbanel, Henry; Gill, Philip

In the performance period of this work under a DOE contract, the co-PIs, Philip Gill and Henry Abarbanel, developed new methods for statistical data assimilation for problems of DOE interest, including geophysical and biological problems. This included numerical optimization algorithms for variational principles, new parallel processing Monte Carlo routines for performing the path integrals of statistical data assimilation. These results have been summarized in the monograph: “Predicting the Future: Completing Models of Observed Complex Systems” by Henry Abarbanel, published by Spring-Verlag in June 2013. Additional results and details have appeared in the peer reviewed literature.

Comprehensive model of a hermetic reciprocating compressor

NASA Astrophysics Data System (ADS)

Yang, B.; Ziviani, D.; Groll, E. A.

2017-08-01

A comprehensive simulation model is presented to predict the performance of a hermetic reciprocating compressor and to reveal the underlying mechanisms when the compressor is running. The presented model is composed of sub-models simulating the in-cylinder compression process, piston ring/journal bearing frictional power loss, single phase induction motor and the overall compressor energy balance among different compressor components. The valve model, leakage through piston ring model and in-cylinder heat transfer model are also incorporated into the in-cylinder compression process model. A numerical algorithm solving the model is introduced. The predicted results of the compressor mass flow rate and input power consumption are compared to the published compressor map values. Future work will focus on detailed experimental validation of the model and parametric studies investigating the effects of structural parameters, including the stroke-to-bore ratio, on the compressor performance.

Numerical fatigue analysis of premolars restored by CAD/CAM ceramic crowns.

PubMed

Homaei, Ehsan; Jin, Xiao-Zhuang; Pow, Edmond Ho Nang; Matinlinna, Jukka Pekka; Tsoi, James Kit-Hon; Farhangdoost, Khalil

2018-04-10

The purpose of this study was to estimate the fatigue life of premolars restored with two dental ceramics, lithium disilicate (LD) and polymer infiltrated ceramic (PIC) using the numerical method and compare it with the published in vitro data. A premolar restored with full-coverage crown was digitized. The volumetric shape of tooth tissues and crowns were created in Mimics ® . They were transferred to IA-FEMesh for mesh generation and the model was analyzed with Abaqus. By combining the stress distribution results with fatigue stress-life (S-N) approach, the lifetime of restored premolars was predicted. The predicted lifetime was 1,231,318 cycles for LD with fatigue load of 1400N, while the one for PIC was 475,063 cycles with the load of 870N. The peak value of maximum principal stress occurred at the contact area (LD: 172MPa and PIC: 96MPa) and central fossa (LD: 100MPa and PIC: 64MPa) for both ceramics which were the most seen failure areas in the experiment. In the adhesive layer, the maximum shear stress was observed at the shoulder area (LD: 53.6MPa and PIC: 29MPa). The fatigue life and failure modes of all-ceramic crown determined by the numerical method seem to correlate well with the previous experimental study. Copyright © 2018 The Academy of Dental Materials. Published by Elsevier Inc. All rights reserved.

Does surface roughness influence the primary stability of acetabular cups? A numerical and experimental biomechanical evaluation.

PubMed

Le Cann, Sophie; Galland, Alexandre; Rosa, Benoît; Le Corroller, Thomas; Pithioux, Martine; Argenson, Jean-Noël; Chabrand, Patrick; Parratte, Sébastien

2014-09-01

Most acetabular cups implanted today are press-fit impacted cementless. Anchorage begins with the primary stability given by insertion of a slightly oversized cup. This primary stability is key to obtaining bone ingrowth and secondary stability. We tested the hypothesis that primary stability of the cup is related to surface roughness of the implant, using both an experimental and a numerical models to analyze how three levels of surface roughness (micro, macro and combined) affect the primary stability of the cup. We also investigated the effect of differences in diameter between the cup and its substrate, and of insertion force, on the cups' primary stability. The results of our study show that primary stability depends on the surface roughness of the cup. The presence of macro-roughness on the peripheral ring is found to decrease primary stability; there was excessive abrasion of the substrate, damaging it and leading to poor primary stability. Numerical modeling indicates that oversizing the cup compared to its substrate has an impact on primary stability, as has insertion force. Copyright © 2014 IPEM. Published by Elsevier Ltd. All rights reserved.

Nonlinear system identification based on Takagi-Sugeno fuzzy modeling and unscented Kalman filter.

PubMed

Vafamand, Navid; Arefi, Mohammad Mehdi; Khayatian, Alireza

2018-03-01

This paper proposes two novel Kalman-based learning algorithms for an online Takagi-Sugeno (TS) fuzzy model identification. The proposed approaches are designed based on the unscented Kalman filter (UKF) and the concept of dual estimation. Contrary to the extended Kalman filter (EKF) which utilizes derivatives of nonlinear functions, the UKF employs the unscented transformation. Consequently, non-differentiable membership functions can be considered in the structure of the TS models. This makes the proposed algorithms to be applicable for the online parameter calculation of wider classes of TS models compared to the recently published papers concerning the same issue. Furthermore, because of the great capability of the UKF in handling severe nonlinear dynamics, the proposed approaches can effectively approximate the nonlinear systems. Finally, numerical and practical examples are provided to show the advantages of the proposed approaches. Simulation results reveal the effectiveness of the proposed methods and performance improvement based on the root mean square (RMS) of the estimation error compared to the existing results. Copyright © 2018 ISA. Published by Elsevier Ltd. All rights reserved.

Transient well flow in vertically heterogeneous aquifers

NASA Astrophysics Data System (ADS)

Hemker, C. J.

1999-11-01

A solution for the general problem of computing well flow in vertically heterogeneous aquifers is found by an integration of both analytical and numerical techniques. The radial component of flow is treated analytically; the drawdown is a continuous function of the distance to the well. The finite-difference technique is used for the vertical flow component only. The aquifer is discretized in the vertical dimension and the heterogeneous aquifer is considered to be a layered (stratified) formation with a finite number of homogeneous sublayers, where each sublayer may have different properties. The transient part of the differential equation is solved with Stehfest's algorithm, a numerical inversion technique of the Laplace transform. The well is of constant discharge and penetrates one or more of the sublayers. The effect of wellbore storage on early drawdown data is taken into account. In this way drawdowns are found for a finite number of sublayers as a continuous function of radial distance to the well and of time since the pumping started. The model is verified by comparing results with published analytical and numerical solutions for well flow in homogeneous and heterogeneous, confined and unconfined aquifers. Instantaneous and delayed drainage of water from above the water table are considered, combined with the effects of partially penetrating and finite-diameter wells. The model is applied to demonstrate that the transient effects of wellbore storage in unconfined aquifers are less pronounced than previous numerical experiments suggest. Other applications of the presented solution technique are given for partially penetrating wells in heterogeneous formations, including a demonstration of the effect of decreasing specific storage values with depth in an otherwise homogeneous aquifer. The presented solution can be a powerful tool for the analysis of drawdown from pumping tests, because hydraulic properties of layered heterogeneous aquifer systems with partially penetrating wells may be estimated without the need to construct transient numerical models. A computer program based on the hybrid analytical-numerical technique is available from the author.

Plasma and radio waves from Neptune: Source mechanisms and propagation

NASA Astrophysics Data System (ADS)

Wong, H. K.

1994-03-01

This report summarizes results obtained through the support of NASA Grant NAGW-2412. The objective of this project is to conduct a comprehensive investigation of the radio wave emission observed by the planetary radio astronomy (PRA) instrument on board Voyager 2 as if flew by Neptune. This study has included data analysis, theoretical and numerical calculations, ray tracing, and modeling to determine the possible source mechanism(s) and locations of the Neptune radio emissions. We have completed four papers, which are included in the appendix. The paper 'Modeling of Whistler Ray Paths in the Magnetosphere of Neptune' investigated the propagation and dispersion of lighting-generated whistler in the magnetosphere of Neptune by using three dimensional ray tracing. The two papers 'Numerical Simulations of Bursty Radio Emissions from Planetary Magnetospheres' and 'Numerical Simulations of Bursty Planetary Radio Emissions' employed numerical simulations to investigate an alternate source mechanism of bursty radio emissions in addition to the cyclotron maser instability. We have also studied the possible generation of Z and whistler mode waves by the temperature anisotropic beam instability and the result was published in 'Electron Cyclotron Wave Generation by Relativistic Electrons.' Besides the aforementioned studies, we have also collaborated with members of the PRA team to investigate various aspects of the radio wave data. Two papers have been submitted for publication and the abstracts of these papers are also listed in the appendix.

Plasma and radio waves from Neptune: Source mechanisms and propagation

NASA Technical Reports Server (NTRS)

Wong, H. K.

1994-01-01

This report summarizes results obtained through the support of NASA Grant NAGW-2412. The objective of this project is to conduct a comprehensive investigation of the radio wave emission observed by the planetary radio astronomy (PRA) instrument on board Voyager 2 as if flew by Neptune. This study has included data analysis, theoretical and numerical calculations, ray tracing, and modeling to determine the possible source mechanism(s) and locations of the Neptune radio emissions. We have completed four papers, which are included in the appendix. The paper 'Modeling of Whistler Ray Paths in the Magnetosphere of Neptune' investigated the propagation and dispersion of lighting-generated whistler in the magnetosphere of Neptune by using three dimensional ray tracing. The two papers 'Numerical Simulations of Bursty Radio Emissions from Planetary Magnetospheres' and 'Numerical Simulations of Bursty Planetary Radio Emissions' employed numerical simulations to investigate an alternate source mechanism of bursty radio emissions in addition to the cyclotron maser instability. We have also studied the possible generation of Z and whistler mode waves by the temperature anisotropic beam instability and the result was published in 'Electron Cyclotron Wave Generation by Relativistic Electrons.' Besides the aforementioned studies, we have also collaborated with members of the PRA team to investigate various aspects of the radio wave data. Two papers have been submitted for publication and the abstracts of these papers are also listed in the appendix.

Nonlinear system modeling based on bilinear Laguerre orthonormal bases.

PubMed

Garna, Tarek; Bouzrara, Kais; Ragot, José; Messaoud, Hassani

2013-05-01

This paper proposes a new representation of discrete bilinear model by developing its coefficients associated to the input, to the output and to the crossed product on three independent Laguerre orthonormal bases. Compared to classical bilinear model, the resulting model entitled bilinear-Laguerre model ensures a significant parameter number reduction as well as simple recursive representation. However, such reduction still constrained by an optimal choice of Laguerre pole characterizing each basis. To do so, we develop a pole optimization algorithm which constitutes an extension of that proposed by Tanguy et al.. The bilinear-Laguerre model as well as the proposed pole optimization algorithm are illustrated and tested on a numerical simulations and validated on the Continuous Stirred Tank Reactor (CSTR) System. Copyright © 2012 ISA. Published by Elsevier Ltd. All rights reserved.

Joint numerical study of the 2011 Tohoku-Oki tsunami: comparative propagation simulations and high resolution coastal models

NASA Astrophysics Data System (ADS)

Loevenbruck, Anne; Arpaia, Luca; Ata, Riadh; Gailler, Audrey; Hayashi, Yutaka; Hébert, Hélène; Heinrich, Philippe; Le Gal, Marine; Lemoine, Anne; Le Roy, Sylvestre; Marcer, Richard; Pedreros, Rodrigo; Pons, Kevin; Ricchiuto, Mario; Violeau, Damien

2017-04-01

This study is part of the joint actions carried out within TANDEM (Tsunamis in northern AtlaNtic: Definition of Effects by Modeling). This French project, mainly dedicated to the appraisal of coastal effects due to tsunami waves on the French coastlines, was initiated after the catastrophic 2011 Tohoku-Oki tsunami. This event, which tragically struck Japan, drew the attention to the importance of tsunami risk assessment, in particular when nuclear facilities are involved. As a contribution to this challenging task, the TANDEM partners intend to provide guidance for the French Atlantic area based on numerical simulation. One of the identified objectives consists in designing, adapting and validating simulation codes for tsunami hazard assessment. Besides an integral benchmarking workpackage, the outstanding database of the 2011 event offers the TANDEM partners the opportunity to test their numerical tools with a real case. As a prerequisite, among the numerous published seismic source models arisen from the inversion of the various available records, a couple of coseismic slip distributions have been selected to provide common initial input parameters for the tsunami computations. After possible adaptations or specific developments, the different codes are employed to simulate the Tohoku-Oki tsunami from its source to the northeast Japanese coastline. The results are tested against the numerous tsunami measurements and, when relevant, comparisons of the different codes are carried out. First, the results related to the oceanic propagation phase are compared with the offshore records. Then, the modeled coastal impacts are tested against the onshore data. Flooding at a regional scale is considered, but high resolution simulations are also performed with some of the codes. They allow examining in detail the runup amplitudes and timing, as well as the complexity of the tsunami interaction with the coastal structures. The work is supported by the Tandem project in the frame of French PIA grant ANR-11-RSNR-00023.

Unsteady numerical simulations of the stability and dynamics of flames

NASA Technical Reports Server (NTRS)

Kailasanath, K.; Patnaik, G.; Oran, E. S.

1995-01-01

In this report we describe the research performed at the Naval Research Laboratory in support of the NASA Microgravity Science and Applications Program over the past three years (from Feb. 1992) with emphasis on the work performed since the last microgravity combustion workshop. The primary objective of our research is to develop an understanding of the differences in the structure, stability, dynamics and extinction of flames in earth gravity and in microgravity environments. Numerical simulations, in which the various physical and chemical processes can be independently controlled, can significantly advance our understanding of these differences. Therefore, our approach is to use detailed time-dependent, multi-dimensional, multispecies numerical models to perform carefully designed computational experiments. The basic issues we have addressed, a general description of the numerical approach, and a summary of the results are described in this report. More detailed discussions are available in the papers published which are referenced herein. Some of the basic issues we have addressed recently are (1) the relative importance of wall losses and gravity on the extinguishment of downward-propagating flames; (2) the role of hydrodynamic instabilities in the formation of cellular flames; (3) effects of gravity on burner-stabilized flames, and (4) effects of radiative losses and chemical-kinetics on flames near flammability limits. We have also expanded our efforts to include hydrocarbon flames in addition to hydrogen flames and to perform simulations in support of other on-going efforts in the microgravity combustion sciences program. Modeling hydrocarbon flames typically involves a larger number of species and a much larger number of reactions when compared to hydrogen. In addition, more complex radiation models may also be needed. In order to efficiently compute such complex flames recent developments in parallel computing have been utilized to develop a state-of-the-art parallel flame code. This is discussed below in some detail after a brief discussion of the numerical models.

Adjustment for reporting bias in network meta-analysis of antidepressant trials

PubMed Central

2012-01-01

Background Network meta-analysis (NMA), a generalization of conventional MA, allows for assessing the relative effectiveness of multiple interventions. Reporting bias is a major threat to the validity of MA and NMA. Numerous methods are available to assess the robustness of MA results to reporting bias. We aimed to extend such methods to NMA. Methods We introduced 2 adjustment models for Bayesian NMA. First, we extended a meta-regression model that allows the effect size to depend on its standard error. Second, we used a selection model that estimates the propensity of trial results being published and in which trials with lower propensity are weighted up in the NMA model. Both models rely on the assumption that biases are exchangeable across the network. We applied the models to 2 networks of placebo-controlled trials of 12 antidepressants, with 74 trials in the US Food and Drug Administration (FDA) database but only 51 with published results. NMA and adjustment models were used to estimate the effects of the 12 drugs relative to placebo, the 66 effect sizes for all possible pair-wise comparisons between drugs, probabilities of being the best drug and ranking of drugs. We compared the results from the 2 adjustment models applied to published data and NMAs of published data and NMAs of FDA data, considered as representing the totality of the data. Results Both adjustment models showed reduced estimated effects for the 12 drugs relative to the placebo as compared with NMA of published data. Pair-wise effect sizes between drugs, probabilities of being the best drug and ranking of drugs were modified. Estimated drug effects relative to the placebo from both adjustment models were corrected (i.e., similar to those from NMA of FDA data) for some drugs but not others, which resulted in differences in pair-wise effect sizes between drugs and ranking. Conclusions In this case study, adjustment models showed that NMA of published data was not robust to reporting bias and provided estimates closer to that of NMA of FDA data, although not optimal. The validity of such methods depends on the number of trials in the network and the assumption that conventional MAs in the network share a common mean bias mechanism. PMID:23016799

Modelling Detailed-Chemistry Effects on Turbulent Diffusion Flames using a Parallel Solution-Adaptive Scheme

NASA Astrophysics Data System (ADS)

Jha, Pradeep Kumar

Capturing the effects of detailed-chemistry on turbulent combustion processes is a central challenge faced by the numerical combustion community. However, the inherent complexity and non-linear nature of both turbulence and chemistry require that combustion models rely heavily on engineering approximations to remain computationally tractable. This thesis proposes a computationally efficient algorithm for modelling detailed-chemistry effects in turbulent diffusion flames and numerically predicting the associated flame properties. The cornerstone of this combustion modelling tool is the use of parallel Adaptive Mesh Refinement (AMR) scheme with the recently proposed Flame Prolongation of Intrinsic low-dimensional manifold (FPI) tabulated-chemistry approach for modelling complex chemistry. The effect of turbulence on the mean chemistry is incorporated using a Presumed Conditional Moment (PCM) approach based on a beta-probability density function (PDF). The two-equation k-w turbulence model is used for modelling the effects of the unresolved turbulence on the mean flow field. The finite-rate of methane-air combustion is represented here by using the GRI-Mech 3.0 scheme. This detailed mechanism is used to build the FPI tables. A state of the art numerical scheme based on a parallel block-based solution-adaptive algorithm has been developed to solve the Favre-averaged Navier-Stokes (FANS) and other governing partial-differential equations using a second-order accurate, fully-coupled finite-volume formulation on body-fitted, multi-block, quadrilateral/hexahedral mesh for two-dimensional and three-dimensional flow geometries, respectively. A standard fourth-order Runge-Kutta time-marching scheme is used for time-accurate temporal discretizations. Numerical predictions of three different diffusion flames configurations are considered in the present work: a laminar counter-flow flame; a laminar co-flow diffusion flame; and a Sydney bluff-body turbulent reacting flow. Comparisons are made between the predicted results of the present FPI scheme and Steady Laminar Flamelet Model (SLFM) approach for diffusion flames. The effects of grid resolution on the predicted overall flame solutions are also assessed. Other non-reacting flows have also been considered to further validate other aspects of the numerical scheme. The present schemes predict results which are in good agreement with published experimental results and reduces the computational cost involved in modelling turbulent diffusion flames significantly, both in terms of storage and processing time.

Small field detector correction factors kQclin,Qmsr (fclin,fmsr) for silicon-diode and diamond detectors with circular 6 MV fields derived using both empirical and numerical methods.

PubMed

O'Brien, D J; León-Vintró, L; McClean, B

2016-01-01

The use of radiotherapy fields smaller than 3 cm in diameter has resulted in the need for accurate detector correction factors for small field dosimetry. However, published factors do not always agree and errors introduced by biased reference detectors, inaccurate Monte Carlo models, or experimental errors can be difficult to distinguish. The aim of this study was to provide a robust set of detector-correction factors for a range of detectors using numerical, empirical, and semiempirical techniques under the same conditions and to examine the consistency of these factors between techniques. Empirical detector correction factors were derived based on small field output factor measurements for circular field sizes from 3.1 to 0.3 cm in diameter performed with a 6 MV beam. A PTW 60019 microDiamond detector was used as the reference dosimeter. Numerical detector correction factors for the same fields were derived based on calculations from a geant4 Monte Carlo model of the detectors and the Linac treatment head. Semiempirical detector correction factors were derived from the empirical output factors and the numerical dose-to-water calculations. The PTW 60019 microDiamond was found to over-respond at small field sizes resulting in a bias in the empirical detector correction factors. The over-response was similar in magnitude to that of the unshielded diode. Good agreement was generally found between semiempirical and numerical detector correction factors except for the PTW 60016 Diode P, where the numerical values showed a greater over-response than the semiempirical values by a factor of 3.7% for a 1.1 cm diameter field and higher for smaller fields. Detector correction factors based solely on empirical measurement or numerical calculation are subject to potential bias. A semiempirical approach, combining both empirical and numerical data, provided the most reliable results.

The properties of human body phantoms used in calculations of electromagnetic fields exposure by wireless communication handsets or hand-operated industrial devices.

PubMed

Zradziński, Patryk

2013-06-01

According to international guidelines, the assessment of biophysical effects of exposure to electromagnetic fields (EMF) generated by hand-operated sources needs the evaluation of induced electric field (E(in)) or specific energy absorption rate (SAR) caused by EMF inside a worker's body and is usually done by the numerical simulations with different protocols applied to these two exposure cases. The crucial element of these simulations is the numerical phantom of the human body. Procedures of E(in) and SAR evaluation due to compliance analysis with exposure limits have been defined in Institute of Electrical and Electronics Engineers standards and International Commission on Non-Ionizing Radiation Protection guidelines, but a detailed specification of human body phantoms has not been described. An analysis of the properties of over 30 human body numerical phantoms was performed which has been used in recently published investigations related to the assessment of EMF exposure by various sources. The differences in applicability of these phantoms in the evaluation of E(in) and SAR while operating industrial devices and SAR while using mobile communication handsets are discussed. The whole human body numerical phantom dimensions, posture, spatial resolution and electric contact with the ground constitute the key parameters in modeling the exposure related to industrial devices, while modeling the exposure from mobile communication handsets, which needs only to represent the exposed part of the human body nearest to the handset, mainly depends on spatial resolution of the phantom. The specification and standardization of these parameters of numerical human body phantoms are key requirements to achieve comparable and reliable results from numerical simulations carried out for compliance analysis against exposure limits or within the exposure assessment in EMF-related epidemiological studies.

A discrete time-varying internal model-based approach for high precision tracking of a multi-axis servo gantry.

PubMed

Zhang, Zhen; Yan, Peng; Jiang, Huan; Ye, Peiqing

2014-09-01

In this paper, we consider the discrete time-varying internal model-based control design for high precision tracking of complicated reference trajectories generated by time-varying systems. Based on a novel parallel time-varying internal model structure, asymptotic tracking conditions for the design of internal model units are developed, and a low order robust time-varying stabilizer is further synthesized. In a discrete time setting, the high precision tracking control architecture is deployed on a Voice Coil Motor (VCM) actuated servo gantry system, where numerical simulations and real time experimental results are provided, achieving the tracking errors around 3.5‰ for frequency-varying signals. Copyright © 2014 ISA. Published by Elsevier Ltd. All rights reserved.

Study on global performances and mooring-induced damping of a semi-submersible

NASA Astrophysics Data System (ADS)

Xiong, Ling-zhi; Yang, Jian-min; Lv, Hai-ning; Zhao, Wen-hua; Kou, Yu-feng

2016-10-01

The harsh environmental conditions bring strong nonlinearities to the hydrodynamic performances of the offshore floating platforms, which challenge the reliable prediction of the platform coupled with the mooring system. The present study investigates a typical semi-submersible under both the operational and the survival conditions through numerical and experimental methods. The motion responses, the mooring line tensions, and the wave loads on the longitudinal mid-section are investigated by both the fully non-linearly coupled numerical simulation and the physical experiment. Particularly, in the physical model test, the wave loads distributed on the semi-submersible's mid-section were measured by dividing the model into two parts, namely the port and the starboard parts, which were rigidly connected by three six-component force transducers. It is concluded that both the numerical and physical model can have good prediction of the semi-submersible's global responses. In addition, an improved numerical approach is proposed for the estimation of the mooring-induced damping, and is validated by both the experimental and the published results. The characteristics of the mooring-induced damping are further summarized in various sea states, including the operational and the survival environments. In order to obtain the better prediction of the system response in deep water, the mooring-induced damping of the truncated mooring lines applied in the physical experiment are compensated by comparing with those in full length. Furthermore, the upstream taut and the downstream slack mooring lines are classified and investigated to obtain the different mooring line damping performances in the comparative study.

The 3D Printing of the Paralyzed Vocal Fold: Added Value in Injection Laryngoplasty.

PubMed

Hamdan, Abdul-Latif; Haddad, Ghassan; Haydar, Ali; Hamade, Ramsey

2017-08-18

Three-dimensional (3D) printing has had numerous applications in various disciplines, especially otolaryngology. We report the first case of a high-fidelity 3D-printed model of the vocal cords of a patient with unilateral vocal cord paralysis in need of injection laryngoplasty. A case report was carried out. A tailored 3D-printed anatomically precise models for injection laryngoplasty has the potential to enhance preoperative planning, resident teaching, and patient education. A 3D printing model of the paralyzed vocal cord has an added value in the preoperative assessment of patients undergoing injection laryngoplasty. Copyright © 2017 The Voice Foundation. Published by Elsevier Inc. All rights reserved.

A MacCormack-TVD finite difference method to simulate the mass flow in mountainous terrain with variable computational domain

NASA Astrophysics Data System (ADS)

Ouyang, Chaojun; He, Siming; Xu, Qiang; Luo, Yu; Zhang, Wencheng

2013-03-01

A two-dimensional mountainous mass flow dynamic procedure solver (Massflow-2D) using the MacCormack-TVD finite difference scheme is proposed. The solver is implemented in Matlab on structured meshes with variable computational domain. To verify the model, a variety of numerical test scenarios, namely, the classical one-dimensional and two-dimensional dam break, the landslide in Hong Kong in 1993 and the Nora debris flow in the Italian Alps in 2000, are executed, and the model outputs are compared with published results. It is established that the model predictions agree well with both the analytical solution as well as the field observations.

The field representation language.

PubMed

Tsafnat, Guy

2008-02-01

The complexity of quantitative biomedical models, and the rate at which they are published, is increasing to a point where managing the information has become all but impossible without automation. International efforts are underway to standardise representation languages for a number of mathematical entities that represent a wide variety of physiological systems. This paper presents the Field Representation Language (FRL), a portable representation of values that change over space and/or time. FRL is an extensible mark-up language (XML) derivative with support for large numeric data sets in Hierarchical Data Format version 5 (HDF5). Components of FRL can be reused through unified resource identifiers (URI) that point to external resources such as custom basis functions, boundary geometries and numerical data. To demonstrate the use of FRL as an interchange we present three models that study hyperthermia cancer treatment: a fractal model of liver tumour microvasculature; a probabilistic model simulating the deposition of magnetic microspheres throughout it; and a finite element model of hyperthermic treatment. The microsphere distribution field was used to compute the heat generation rate field around the tumour. We used FRL to convey results from the microsphere simulation to the treatment model. FRL facilitated the conversion of the coordinate systems and approximated the integral over regions of the microsphere deposition field.

Development and evaluation of a regression-based model to predict cesium-137 concentration ratios for saltwater fish.

PubMed

Pinder, John E; Rowan, David J; Smith, Jim T

2016-02-01

Data from published studies and World Wide Web sources were combined to develop a regression model to predict (137)Cs concentration ratios for saltwater fish. Predictions were developed from 1) numeric trophic levels computed primarily from random resampling of known food items and 2) K concentrations in the saltwater for 65 samplings from 41 different species from both the Atlantic and Pacific Oceans. A number of different models were initially developed and evaluated for accuracy which was assessed as the ratios of independently measured concentration ratios to those predicted by the model. In contrast to freshwater systems, were K concentrations are highly variable and are an important factor in affecting fish concentration ratios, the less variable K concentrations in saltwater were relatively unimportant in affecting concentration ratios. As a result, the simplest model, which used only trophic level as a predictor, had comparable accuracies to more complex models that also included K concentrations. A test of model accuracy involving comparisons of 56 published concentration ratios from 51 species of marine fish to those predicted by the model indicated that 52 of the predicted concentration ratios were within a factor of 2 of the observed concentration ratios. Copyright © 2015 Elsevier Ltd. All rights reserved.

New methodology for mechanical characterization of human superficial facial tissue anisotropic behaviour in vivo.

PubMed

Then, C; Stassen, B; Depta, K; Silber, G

2017-07-01

Mechanical characterization of human superficial facial tissue has important applications in biomedical science, computer assisted forensics, graphics, and consumer goods development. Specifically, the latter may include facial hair removal devices. Predictive accuracy of numerical models and their ability to elucidate biomechanically relevant questions depends on the acquisition of experimental data and mechanical tissue behavior representation. Anisotropic viscoelastic behavioral characterization of human facial tissue, deformed in vivo with finite strain, however, is sparse. Employing an experimental-numerical approach, a procedure is presented to evaluate multidirectional tensile properties of superficial tissue layers of the face in vivo. Specifically, in addition to stress relaxation, displacement-controlled multi-step ramp-and-hold protocols were performed to separate elastic from inelastic properties. For numerical representation, an anisotropic hyperelastic material model in conjunction with a time domain linear viscoelasticity formulation with Prony series was employed. Model parameters were inversely derived, employing finite element models, using multi-criteria optimization. The methodology provides insight into mechanical superficial facial tissue properties. Experimental data shows pronounced anisotropy, especially with large strain. The stress relaxation rate does not depend on the loading direction, but is strain-dependent. Preconditioning eliminates equilibrium hysteresis effects and leads to stress-strain repeatability. In the preconditioned state tissue stiffness and hysteresis insensitivity to strain rate in the applied range is evident. The employed material model fits the nonlinear anisotropic elastic results and the viscoelasticity model reasonably reproduces time-dependent results. Inversely deduced maximum anisotropic long-term shear modulus of linear elasticity is G ∞,max aniso =2.43kPa and instantaneous initial shear modulus at an applied rate of ramp loading is G 0,max aniso =15.38kPa. Derived mechanical model parameters constitute a basis for complex skin interaction simulation. Copyright © 2017. Published by Elsevier Ltd.

Bubble Dynamics on a Heated Surface

NASA Technical Reports Server (NTRS)

Kassemi, M.; Rashidnia, N.

1999-01-01

In this work, we study steady and oscillatory thermocapillary and natural convective flows generated by a bubble on a heated solid surface. The interaction between gas and vapor bubbles with the surrounding fluid is of interest for both space and ground-based processing. A combined numerical-experimental approach is adopted here. The temperature field is visualized using Mach-Zehnder and/or Wollaston Prism Interferometry and the flow field is observed by a laser sheet flow visualization technique. A finite element numerical model is developed which solves the transient two-dimensional continuity, momentum, and energy equations and includes the effects of temperature-dependent surface tension and bubble surface deformation. Below the critical Marangoni number, the steady state low-g and 1-g temperature and velocity fields predicted by the finite element model are in excellent agreement with both the visualization experiments in our laboratory and recently published experimental results in the literature. Above the critical Marangoni number, the model predicts an oscillatory flow which is also closely confirmed by experiments. It is shown that the dynamics of the oscillatory flow are directly controlled by the thermal and hydrodynamic interactions brought about by combined natural and thermocapillary convection. Therefore, as numerical simulations show, there are considerable differences between the 1-g and low-g temperature and flow fields at both low and high Marangoni numbers. This has serious implications for both materials processing and fluid management in space.

Numerical fatigue 3D-FE modeling of indirect composite-restored posterior teeth.

PubMed

Ausiello, Pietro; Franciosa, Pasquale; Martorelli, Massimo; Watts, David C

2011-05-01

In restored teeth, stresses at the tooth-restoration interface during masticatory processes may fracture the teeth or the restoration and cracks may grow and propagate. The aim was to apply numerical methodologies to simulate the behavior of a restored tooth and to evaluate fatigue lifetimes before crack failure. Using a CAD-FEM procedure and fatigue mechanic laws, the fatigue damage of a restored molar was numerically estimated. Tessellated surfaces of enamel and dentin were extracted by applying segmentation and classification algorithms, to sets of 2D image data. A user-friendly GUI, which enables selection and visualization of 3D tessellated surfaces, was developed in a MatLab(®) environment. The tooth-boundary surfaces of enamel and dentin were then created by sweeping operations through cross-sections. A class II MOD cavity preparation was then added into the 3D model and tetrahedral mesh elements were generated. Fatigue simulation was performed by combining a preliminary static FEA simulation with classical fatigue mechanical laws. Regions with the shortest fatigue-life were located around the fillets of the class II MOD cavity, where the static stress was highest. The described method can be successfully adopted to generate detailed 3D-FE models of molar teeth, with different cavities and restorative materials. This method could be quickly implemented for other dental or biomechanical applications. Copyright © 2010 Academy of Dental Materials. Published by Elsevier Ltd. All rights reserved.

Numerical modelling of methane oxidation efficiency and coupled water-gas-heat reactive transfer in a sloping landfill cover.

PubMed

Feng, S; Ng, C W W; Leung, A K; Liu, H W

2017-10-01

Microbial aerobic methane oxidation in unsaturated landfill cover involves coupled water, gas and heat reactive transfer. The coupled process is complex and its influence on methane oxidation efficiency is not clear, especially in steep covers where spatial variations of water, gas and heat are significant. In this study, two-dimensional finite element numerical simulations were carried out to evaluate the performance of unsaturated sloping cover. The numerical model was calibrated using a set of flume model test data, and was then subsequently used for parametric study. A new method that considers transient changes of methane concentration during the estimation of the methane oxidation efficiency was proposed and compared against existing methods. It was found that a steeper cover had a lower oxidation efficiency due to enhanced downslope water flow, during which desaturation of soil promoted gas transport and hence landfill gas emission. This effect was magnified as the cover angle and landfill gas generation rate at the bottom of the cover increased. Assuming the steady-state methane concentration in a cover would result in a non-conservative overestimation of oxidation efficiency, especially when a steep cover was subjected to rainfall infiltration. By considering the transient methane concentration, the newly-modified method can give a more accurate oxidation efficiency. Copyright © 2017. Published by Elsevier Ltd.

Accuracy and precision of gravitational-wave models of inspiraling neutron star-black hole binaries with spin: Comparison with matter-free numerical relativity in the low-frequency regime

NASA Astrophysics Data System (ADS)

Kumar, Prayush; Barkett, Kevin; Bhagwat, Swetha; Afshari, Nousha; Brown, Duncan A.; Lovelace, Geoffrey; Scheel, Mark A.; Szilágyi, Béla

2015-11-01

Coalescing binaries of neutron stars and black holes are one of the most important sources of gravitational waves for the upcoming network of ground-based detectors. Detection and extraction of astrophysical information from gravitational-wave signals requires accurate waveform models. The effective-one-body and other phenomenological models interpolate between analytic results and numerical relativity simulations, that typically span O (10 ) orbits before coalescence. In this paper we study the faithfulness of these models for neutron star-black hole binaries. We investigate their accuracy using new numerical relativity (NR) simulations that span 36-88 orbits, with mass ratios q and black hole spins χBH of (q ,χBH)=(7 ,±0.4 ),(7 ,±0.6 ) , and (5 ,-0.9 ). These simulations were performed treating the neutron star as a low-mass black hole, ignoring its matter effects. We find that (i) the recently published SEOBNRv1 and SEOBNRv2 models of the effective-one-body family disagree with each other (mismatches of a few percent) for black hole spins χBH≥0.5 or χBH≤-0.3 , with waveform mismatch accumulating during early inspiral; (ii) comparison with numerical waveforms indicates that this disagreement is due to phasing errors of SEOBNRv1, with SEOBNRv2 in good agreement with all of our simulations; (iii) phenomenological waveforms agree with SEOBNRv2 only for comparable-mass low-spin binaries, with overlaps below 0.7 elsewhere in the neutron star-black hole binary parameter space; (iv) comparison with numerical waveforms shows that most of this model's dephasing accumulates near the frequency interval where it switches to a phenomenological phasing prescription; and finally (v) both SEOBNR and post-Newtonian models are effectual for neutron star-black hole systems, but post-Newtonian waveforms will give a significant bias in parameter recovery. Our results suggest that future gravitational-wave detection searches and parameter estimation efforts would benefit from using SEOBNRv2 waveform templates when focused on neutron star-black hole systems with q ≲7 and χBH≈[-0.9 ,+0.6 ] . For larger black hole spins and/or binary mass ratios, we recommend the models be further investigated as NR simulations in that region of the parameter space become available.

MHD effects and heat transfer for the UCM fluid along with Joule heating and thermal radiation using Cattaneo-Christov heat flux model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shah, S., E-mail: sajidshah313@yahoo.com; Hussain, S.; Sagheer, M.

2016-08-15

Present study examines the numerical analysis of MHD flow of Maxwell fluid with thermal radiation and Joule heating by considering the recently developed Cattaneo-Christov heat flux model which explains the time relaxation characteristics for the heat flux. The objective is to analyze the governing parameters such as viscoelastic fluid parameter, Magnetic parameter, Eckert and Prandtl number’s impact on the velocity and temperature profiles through graphs and tables. Suitable similarity transformations have been used to reduce the formulated PDEs into a system of coupled non-linear ODEs. Shooting technique has been invoked for finding the numerical solutions of the dimensionless velocity andmore » temperature profiles. Additionally, the MATLAB built-in routine bvp4c has also been used to verify and strengthen the results obtained by shooting method. From some special cases of the present work, a comparison with the previously published results has been presented.« less

A long time span relativistic precession model of the Earth

NASA Astrophysics Data System (ADS)

Tang, Kai; Soffel, Michael H.; Tao, Jin-He; Han, Wen-Biao; Tang, Zheng-Hong

2015-04-01

A numerical solution to the Earth's precession in a relativistic framework for a long time span is presented here. We obtain the motion of the solar system in the Barycentric Celestial Reference System by numerical integration with a symplectic integrator. Special Newtonian corrections accounting for tidal dissipation are included in the force model. The part representing Earth's rotation is calculated in the Geocentric Celestial Reference System by integrating the post-Newtonian equations of motion published by Klioner et al. All the main relativistic effects are included following Klioner et al. In particular, we consider several relativistic reference systems with corresponding time scales, scaled constants and parameters. Approximate expressions for Earth's precession in the interval ±1 Myr around J2000.0 are provided. In the interval ±2000 years around J2000.0, the difference compared to the P03 precession theory is only several arcseconds and the results are consistent with other long-term precession theories. Supported by the National Natural Science Foundation of China.

Simulation of the spatial distribution of the acoustic pressure in sonochemical reactors with numerical methods: a review.

PubMed

Tudela, Ignacio; Sáez, Verónica; Esclapez, María Deseada; Díez-García, María Isabel; Bonete, Pedro; González-García, José

2014-05-01

Numerical methods for the calculation of the acoustic field inside sonoreactors have rapidly emerged in the last 15 years. This paper summarizes some of the most important works on this topic presented in the past, along with the diverse numerical works that have been published since then, reviewing the state of the art from a qualitative point of view. In this sense, we illustrate and discuss some of the models recently developed by the scientific community to deal with some of the complex events that take place in a sonochemical reactor such as the vibration of the reactor walls and the nonlinear phenomena inherent to the presence of ultrasonic cavitation. In addition, we point out some of the upcoming challenges that must be addressed in order to develop a reliable tool for the proper designing of efficient sonoreactors and the scale-up of sonochemical processes. Copyright © 2013 Elsevier B.V. All rights reserved.

Numerical Modeling of Surface and Volumetric Cooling using Optimal T- and Y-shaped Flow Channels

NASA Astrophysics Data System (ADS)

Kosaraju, Srinivas

2017-11-01

The layout of T- and V-shaped flow channel networks on a surface can be optimized for minimum pressure drop and pumping power. The results of the optimization are in the form of geometric parameters such as length and diameter ratios of the stem and branch sections. While these flow channels are optimized for minimum pressure drop, they can also be used for surface and volumetric cooling applications such as heat exchangers, air conditioning and electronics cooling. In this paper, an effort has been made to study the heat transfer characteristics of multiple T- and Y-shaped flow channel configurations using numerical simulations. All configurations are subjected to same input parameters and heat generation constraints. Comparisons are made with similar results published in literature.

An overview of methods for comparative effectiveness research.

PubMed

Meyer, Anne-Marie; Wheeler, Stephanie B; Weinberger, Morris; Chen, Ronald C; Carpenter, William R

2014-01-01

Comparative effectiveness research (CER) is a broad category of outcomes research encompassing many different methods employed by researchers and clinicians from numerous disciplines. The goal of cancer-focused CER is to generate new knowledge to assist cancer stakeholders in making informed decisions that will improve health care and outcomes of both individuals and populations. There are numerous CER methods that may be used to examine specific questions, including randomized controlled trials, observational studies, systematic literature reviews, and decision sciences modeling. Each has its strengths and weaknesses. To both inform and serve as a reference for readers of this issue of Seminars in Radiation Oncology as well as the broader oncology community, we describe CER and several of the more commonly used approaches and analytical methods. © 2013 Published by Elsevier Inc.

Constraints on the H˜ generalized parton distribution from deep virtual Compton scattering measured at HERMES

NASA Astrophysics Data System (ADS)

Guidal, M.

2010-09-01

We have analyzed the longitudinally polarized proton target asymmetry data of the Deep Virtual Compton process recently published by the HERMES Collaboration in terms of Generalized Parton Distributions. We have fitted these new data in a largely model-independent fashion and the procedure results in numerical constraints on the accent="true">H˜Im Compton Form Factor. We present its t- and ξ-dependencies. We also find improvement on the determination of two other Compton Form Factors, HRe and HIm.

Numerical simulations of compact intracloud discharges as the Relativistic Runaway Electron Avalanche-Extensive Air Shower process

NASA Astrophysics Data System (ADS)

Arabshahi, S.; Dwyer, J. R.; Nag, A.; Rakov, V. A.; Rassoul, H. K.

2014-01-01

Compact intracloud discharges (CIDs) are sources of the powerful, often isolated radio pulses emitted by thunderstorms. The VLF-LF radio pulses are called narrow bipolar pulses (NBPs). It is still not clear how CIDs are produced, but two categories of theoretical models that have previously been considered are the Transmission Line (TL) model and the Relativistic Runaway Electron Avalanche-Extensive Air Showers (RREA-EAS) model. In this paper, we perform numerical calculations of RREA-EASs for various electric field configurations inside thunderstorms. The results of these calculations are compared to results from the other models and to the experimental data. Our analysis shows that different theoretical models predict different fundamental characteristics for CIDs. Therefore, many previously published properties of CIDs are highly model dependent. This is because of the fact that measurements of the radiation field usually provide information about the current moment of the source, and different physical models with different discharge currents could have the same current moment. We have also found that although the RREA-EAS model could explain the current moments of CIDs, the required electric fields in the thundercloud are rather large and may not be realistic. Furthermore, the production of NBPs from RREA-EAS requires very energetic primary cosmic ray particles, not observed in nature. If such ultrahigh-energy particles were responsible for NBPs, then they should be far less frequent than is actually observed.

Revealing the long-term landscape evolution of the South Atlantic passive continental margin, Brazil and Namibia, by thermokinematic numerical modeling using the software code Pecube.

NASA Astrophysics Data System (ADS)

Stippich, Christian; Glasmacher, Ulrich Anton; Hackspacher, Peter

2015-04-01

The aim of the research is to quantify the long-term landscape evolution of the South Atlantic passive continental margin (SAPCM) in SE-Brazil and NW-Namibia. Excellent onshore outcrop conditions and complete rift to post-rift archives between Sao Paulo and Porto Alegre and in the transition from Namibia to Angola (onshore Walvis ridge) allow a high precision quantification of exhumation, and uplift rates, influencing physical parameters, long-term acting forces, and process-response systems. Research will integrate the published and partly published thermochronological data from Brazil and Namibia, and test lately published new concepts on causes of long-term landscape evolution at rifted margins. The climate-continental margin-mantle coupled process-response system is caused by the interaction between endogenous and exogenous forces, which are related to the mantle-process driven rift - drift - passive continental margin evolution of the South Atlantic, and the climate change since the Early/Late Cretaceous climate maximum. Special emphasis will be given to the influence of long-living transform faults such as the Florianopolis Fracture Zone (FFZ) on the long-term topography evolution of the SAPCM's. A long-term landscape evolution model with process rates will be achieved by thermo-kinematic 3-D modeling (software code PECUBE1,2 and FastScape3). Testing model solutions obtained for a multidimensional parameter space against the real thermochronological and geomorphological data set, the most likely combinations of parameter rates, and values can be constrained. The data and models will allow separating the exogenous and endogenous forces and their process rates. References 1. Braun, J., 2003. Pecube: A new finite element code to solve the 3D heat transport equation including the effects of a time-varying, finite amplitude surface topography. Computers and Geosciences, v.29, pp.787-794. 2. Braun, J., van der Beek, P., Valla, P., Robert, X., Herman, F., Goltzbacj, C., Pedersen, V., Perry, C., Simon-Labric, T., Prigent, C. 2012. Quantifying rates of landscape evolution and tectonic processes by thermochronology and numerical modeling of crustal heat transport using PECUBE. Tectonophysics, v.524-525, pp.1-28. 3. Braun, J. and Willett, S.D., 2013. A very efficient, O(n), implicit and parallel method to solve the basic stream power law equation governing fluvial incision and landscape evolution. Geomorphology, v.180-181, 170-179.

Modeling the Fluid Withdraw and Injection Induced Earthquakes

NASA Astrophysics Data System (ADS)

Meng, C.

2016-12-01

We present an open source numerical code, Defmod, that allows one to model the induced seismicity in an efficient and standalone manner. The fluid withdraw and injection induced earthquake has been a great concern to the industries including oil/gas, wastewater disposal and CO2 sequestration. Being able to numerically model the induced seismicity is long desired. To do that, one has to consider at lease two processes, a steady process that describes the inducing and aseismic stages before and in between the seismic events, and an abrupt process that describes the dynamic fault rupture accompanied by seismic energy radiations during the events. The steady process can be adequately modeled by a quasi-static model, while the abrupt process has to be modeled by a dynamic model. In most of the published modeling works, only one of these processes is considered. The geomechanicists and reservoir engineers are focused more on the quasi-static modeling, whereas the geophysicists and seismologists are focused more on the dynamic modeling. The finite element code Defmod combines these two models into a hybrid model that uses the failure criterion and frictional laws to adaptively switch between the (quasi-)static and dynamic states. The code is capable of modeling episodic fault rupture driven by quasi-static loading, e.g. due to reservoir fluid withdraw and/or injection, and by dynamic loading, e.g. due to the foregoing earthquakes. We demonstrate a case study for the 2013 Azle earthquake.

Lessons from making the Structural Classification of Proteins (SCOP) and their implications for protein structure modelling.

PubMed

Andreeva, Antonina

2016-06-15

The Structural Classification of Proteins (SCOP) database has facilitated the development of many tools and algorithms and it has been successfully used in protein structure prediction and large-scale genome annotations. During the development of SCOP, numerous exceptions were found to topological rules, along with complex evolutionary scenarios and peculiarities in proteins including the ability to fold into alternative structures. This article reviews cases of structural variations observed for individual proteins and among groups of homologues, knowledge of which is essential for protein structure modelling. © 2016 The Author(s). published by Portland Press Limited on behalf of the Biochemical Society.

Turbulence Model Sensitivity and Scour Gap Effect of Unsteady Flow around Pipe: A CFD Study

PubMed Central

Ali, Abbod; Sharma, R. K.; Ganesan, P.

2014-01-01

A numerical investigation of incompressible and transient flow around circular pipe has been carried out at different five gap phases. Flow equations such as Navier-Stokes and continuity equations have been solved using finite volume method. Unsteady horizontal velocity and kinetic energy square root profiles are plotted using different turbulence models and their sensitivity is checked against published experimental results. Flow parameters such as horizontal velocity under pipe, pressure coefficient, wall shear stress, drag coefficient, and lift coefficient are studied and presented graphically to investigate the flow behavior around an immovable pipe and scoured bed. PMID:25136666

Multiphase flow modelling of volcanic ash particle settling in water using adaptive unstructured meshes

NASA Astrophysics Data System (ADS)

Jacobs, C. T.; Collins, G. S.; Piggott, M. D.; Kramer, S. C.; Wilson, C. R. G.

2013-02-01

Small-scale experiments of volcanic ash particle settling in water have demonstrated that ash particles can either settle slowly and individually, or rapidly and collectively as a gravitationally unstable ash-laden plume. This has important implications for the emplacement of tephra deposits on the seabed. Numerical modelling has the potential to extend the results of laboratory experiments to larger scales and explore the conditions under which plumes may form and persist, but many existing models are computationally restricted by the fixed mesh approaches that they employ. In contrast, this paper presents a new multiphase flow model that uses an adaptive unstructured mesh approach. As a simulation progresses, the mesh is optimized to focus numerical resolution in areas important to the dynamics and decrease it where it is not needed, thereby potentially reducing computational requirements. Model verification is performed using the method of manufactured solutions, which shows the correct solution convergence rates. Model validation and application considers 2-D simulations of plume formation in a water tank which replicate published laboratory experiments. The numerically predicted settling velocities for both individual particles and plumes, as well as instability behaviour, agree well with experimental data and observations. Plume settling is clearly hindered by the presence of a salinity gradient, and its influence must therefore be taken into account when considering particles in bodies of saline water. Furthermore, individual particles settle in the laminar flow regime while plume settling is shown (by plume Reynolds numbers greater than unity) to be in the turbulent flow regime, which has a significant impact on entrainment and settling rates. Mesh adaptivity maintains solution accuracy while providing a substantial reduction in computational requirements when compared to the same simulation performed using a fixed mesh, highlighting the benefits of an adaptive unstructured mesh approach.

Large scale centrifuge test of a geomembrane-lined landfill subject to waste settlement and seismic loading.

PubMed

Kavazanjian, Edward; Gutierrez, Angel

2017-10-01

A large scale centrifuge test of a geomembrane-lined landfill subject to waste settlement and seismic loading was conducted to help validate a numerical model for performance based design of geomembrane liner systems. The test was conducted using the 240g-ton centrifuge at the University of California at Davis under the U.S. National Science Foundation Network for Earthquake Engineering Simulation Research (NEESR) program. A 0.05mm thin film membrane was used to model the liner. The waste was modeled using a peat-sand mixture. The side slope membrane was underlain by lubricated low density polyethylene to maximize the difference between the interface shear strength on the top and bottom of the geomembrane and the induced tension in it. Instrumentation included thin film strain gages to monitor geomembrane strains and accelerometers to monitor seismic excitation. The model was subjected to an input design motion intended to simulate strong ground motion from the 1994 Hyogo-ken Nanbu earthquake. Results indicate that downdrag waste settlement and seismic loading together, and possibly each phenomenon individually, can induce potentially damaging tensile strains in geomembrane liners. The data collected from this test is publically available and can be used to validate numerical models for the performance of geomembrane liner systems. Published by Elsevier Ltd.

Augmented Articles: The Future of Peer-Reviewed Publications?

NASA Astrophysics Data System (ADS)

Madura, Thomas Ignatius; Clementel, Nicola; Gull, Theodore R.

2015-08-01

The predominance of 2D figures and animations in the literature is clearly driven by the need to display data in a classic paper-journal format. However, there is no real reason that researchers should be limited to 2D graphics when presenting their results in peer-reviewed publications. This is especially true since all major astrophysical journals are now published online. So-called ‘augmented articles’ are possible, in which 3D interactive models, images, sound, and video can be included directly within an Adobe Portable Document Format (PDF) article. The inclusion of 3D interactive models in the astrophysics literature is slowly becoming popular, and several journals now fully support the inclusion of 3D interactive figures and movies. I present examples of recently published augmented articles in astronomy (e.g. Madura et al. 2015, arXiv:1503.00716) and discuss their perceived benefits and limitations. Such articles may become the norm in astronomy as data and numerical simulations increasingly become multidimensional (see http://www.technologyreview.com/view/535796/astronomers-create-3-d-printed-model-of-colliding-stellar-winds/).

Improving the seismic small-scale modelling by comparison with numerical methods

NASA Astrophysics Data System (ADS)

Pageot, Damien; Leparoux, Donatienne; Le Feuvre, Mathieu; Durand, Olivier; Côte, Philippe; Capdeville, Yann

2017-10-01

The potential of experimental seismic modelling at reduced scale provides an intermediate step between numerical tests and geophysical campaigns on field sites. Recent technologies such as laser interferometers offer the opportunity to get data without any coupling effects. This kind of device is used in the Mesures Ultrasonores Sans Contact (MUSC) measurement bench for which an automated support system makes possible to generate multisource and multireceivers seismic data at laboratory scale. Experimental seismic modelling would become a great tool providing a value-added stage in the imaging process validation if (1) the experimental measurement chain is perfectly mastered, and thus if the experimental data are perfectly reproducible with a numerical tool, as well as if (2) the effective source is reproducible along the measurement setup. These aspects for a quantitative validation concerning devices with piezoelectrical sources and a laser interferometer have not been yet quantitatively studied in published studies. Thus, as a new stage for the experimental modelling approach, these two key issues are tackled in the proposed paper in order to precisely define the quality of the experimental small-scale data provided by the bench MUSC, which are available in the scientific community. These two steps of quantitative validation are dealt apart any imaging techniques in order to offer the opportunity to geophysicists who want to use such data (delivered as free data) of precisely knowing their quality before testing any imaging technique. First, in order to overcome the 2-D-3-D correction usually done in seismic processing when comparing 2-D numerical data with 3-D experimental measurement, we quantitatively refined the comparison between numerical and experimental data by generating accurate experimental line sources, avoiding the necessity of geometrical spreading correction for 3-D point-source data. The comparison with 2-D and 3-D numerical modelling is based on the Spectral Element Method. The approach shows the relevance of building a line source by sampling several source points, except the boundaries effects on later arrival times. Indeed, the experimental results highlight the amplitude feature and the delay equal to π/4 provided by a line source in the same manner than numerical data. In opposite, the 2-D corrections applied on 3-D data showed discrepancies which are higher on experimental data than on numerical ones due to the source wavelet shape and interferences between different arrivals. The experimental results from the approach proposed here show that discrepancies are avoided, especially for the reflected echoes. Concerning the second point aiming to assess the experimental reproducibility of the source, correlation coefficients of recording from a repeated source impact on a homogeneous model are calculated. The quality of the results, that is, higher than 0.98, allow to calculate a mean source wavelet by inversion of a mean data set. Results obtained on a more realistic model simulating clays on limestones, confirmed the reproducibility of the source impact.

Development and application of a complex numerical model and software for the computation of dose conversion factors for radon progenies.

PubMed

Farkas, Árpád; Balásházy, Imre

2015-04-01

A more exact determination of dose conversion factors associated with radon progeny inhalation was possible due to the advancements in epidemiological health risk estimates in the last years. The enhancement of computational power and the development of numerical techniques allow computing dose conversion factors with increasing reliability. The objective of this study was to develop an integrated model and software based on a self-developed airway deposition code, an own bronchial dosimetry model and the computational methods accepted by International Commission on Radiological Protection (ICRP) to calculate dose conversion coefficients for different exposure conditions. The model was tested by its application for exposure and breathing conditions characteristic of mines and homes. The dose conversion factors were 8 and 16 mSv WLM(-1) for homes and mines when applying a stochastic deposition model combined with the ICRP dosimetry model (named PM-A model), and 9 and 17 mSv WLM(-1) when applying the same deposition model combined with authors' bronchial dosimetry model and the ICRP bronchiolar and alveolar-interstitial dosimetry model (called PM-B model). User friendly software for the computation of dose conversion factors has also been developed. The software allows one to compute conversion factors for a large range of exposure and breathing parameters and to perform sensitivity analyses. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Fast 2D flood modelling using GPU technology - recent applications and new developments

NASA Astrophysics Data System (ADS)

Crossley, Amanda; Lamb, Rob; Waller, Simon; Dunning, Paul

2010-05-01

In recent years there has been considerable interest amongst scientists and engineers in exploiting the potential of commodity graphics hardware for desktop parallel computing. The Graphics Processing Units (GPUs) that are used in PC graphics cards have now evolved into powerful parallel co-processors that can be used to accelerate the numerical codes used for floodplain inundation modelling. We report in this paper on experience over the past two years in developing and applying two dimensional (2D) flood inundation models using GPUs to achieve significant practical performance benefits. Starting with a solution scheme for the 2D diffusion wave approximation to the 2D Shallow Water Equations (SWEs), we have demonstrated the capability to reduce model run times in ‘real-world' applications using GPU hardware and programming techniques. We then present results from a GPU-based 2D finite volume SWE solver. A series of numerical test cases demonstrate that the model produces outputs that are accurate and consistent with reference results published elsewhere. In comparisons conducted for a real world test case, the GPU-based SWE model was over 100 times faster than the CPU version. We conclude with some discussion of practical experience in using the GPU technology for flood mapping applications, and for research projects investigating use of Monte Carlo simulation methods for the analysis of uncertainty in 2D flood modelling.

Distributed geospatial model sharing based on open interoperability standards

USGS Publications Warehouse

Feng, Min; Liu, Shuguang; Euliss, Ned H.; Fang, Yin

2009-01-01

Numerous geospatial computational models have been developed based on sound principles and published in journals or presented in conferences. However modelers have made few advances in the development of computable modules that facilitate sharing during model development or utilization. Constraints hampering development of model sharing technology includes limitations on computing, storage, and connectivity; traditional stand-alone and closed network systems cannot fully support sharing and integrating geospatial models. To address this need, we have identified methods for sharing geospatial computational models using Service Oriented Architecture (SOA) techniques and open geospatial standards. The service-oriented model sharing service is accessible using any tools or systems compliant with open geospatial standards, making it possible to utilize vast scientific resources available from around the world to solve highly sophisticated application problems. The methods also allow model services to be empowered by diverse computational devices and technologies, such as portable devices and GRID computing infrastructures. Based on the generic and abstract operations and data structures required for Web Processing Service (WPS) standards, we developed an interactive interface for model sharing to help reduce interoperability problems for model use. Geospatial computational models are shared on model services, where the computational processes provided by models can be accessed through tools and systems compliant with WPS. We developed a platform to help modelers publish individual models in a simplified and efficient way. Finally, we illustrate our technique using wetland hydrological models we developed for the prairie pothole region of North America.

Novel formulation of the ℳ model through the Generalized-K distribution for atmospheric optical channels.

PubMed

Garrido-Balsells, José María; Jurado-Navas, Antonio; Paris, José Francisco; Castillo-Vazquez, Miguel; Puerta-Notario, Antonio

2015-03-09

In this paper, a novel and deeper physical interpretation on the recently published Málaga or ℳ statistical distribution is provided. This distribution, which is having a wide acceptance by the scientific community, models the optical irradiance scintillation induced by the atmospheric turbulence. Here, the analytical expressions previously published are modified in order to express them by a mixture of the known Generalized-K and discrete Binomial and Negative Binomial distributions. In particular, the probability density function (pdf) of the ℳ model is now obtained as a linear combination of these Generalized-K pdf, in which the coefficients depend directly on the parameters of the ℳ distribution. In this way, the Málaga model can be physically interpreted as a superposition of different optical sub-channels each of them described by the corresponding Generalized-K fading model and weighted by the ℳ dependent coefficients. The expressions here proposed are simpler than the equations of the original ℳ model and are validated by means of numerical simulations by generating ℳ -distributed random sequences and their associated histogram. This novel interpretation of the Málaga statistical distribution provides a valuable tool for analyzing the performance of atmospheric optical channels for every turbulence condition.

PREFACE: Special section featuring selected papers from the 3rd International Workshop on Numerical Modelling of High Temperature Superconductors Special section featuring selected papers from the 3rd International Workshop on Numerical Modelling of High Temperature Superconductors

NASA Astrophysics Data System (ADS)

Granados, Xavier; Sánchez, Àlvar; López-López, Josep

2012-10-01

The development of superconducting applications and superconducting engineering requires the support of consistent tools which can provide models for obtaining a good understanding of the behaviour of the systems and predict novel features. These models aim to compute the behaviour of the superconducting systems, design superconducting devices and systems, and understand and test the behavior of the superconducting parts. 50 years ago, in 1962, Charles Bean provided the superconducting community with a model efficient enough to allow the computation of the response of a superconductor to external magnetic fields and currents flowing through in an understandable way: the so called critical-state model. Since then, in addition to the pioneering critical-state approach, other tools have been devised for designing operative superconducting systems, allowing integration of the superconducting design in nearly standard electromagnetic computer-aided design systems by modelling the superconducting parts with consideration of time-dependent processes. In April 2012, Barcelona hosted the 3rd International Workshop on Numerical Modelling of High Temperature Superconductors (HTS), the third in a series of workshops started in Lausanne in 2010 and followed by Cambridge in 2011. The workshop reflected the state-of-the-art and the new initiatives of HTS modelling, considering mathematical, physical and technological aspects within a wide and interdisciplinary scope. Superconductor Science and Technology is now publishing a selection of papers from the workshop which have been selected for their high quality. The selection comprises seven papers covering mathematical, physical and technological topics which contribute to an improvement in the development of procedures, understanding of phenomena and development of applications. We hope that they provide a perspective on the relevance and growth that the modelling of HTS superconductors has achieved in the past 25 years.

An optimal modeling of multidimensional wave digital filtering network for free vibration analysis of symmetrically laminated composite FSDT plates

NASA Astrophysics Data System (ADS)

Tseng, Chien-Hsun

2015-02-01

The technique of multidimensional wave digital filtering (MDWDF) that builds on traveling wave formulation of lumped electrical elements, is successfully implemented on the study of dynamic responses of symmetrically laminated composite plate based on the first order shear deformation theory. The philosophy applied for the first time in this laminate mechanics relies on integration of certain principles involving modeling and simulation, circuit theory, and MD digital signal processing to provide a great variety of outstanding features. Especially benefited by the conservation of passivity gives rise to a nonlinear programming problem (NLP) for the issue of numerical stability of a MD discrete system. Adopting the augmented Lagrangian genetic algorithm, an effective optimization technique for rapidly achieving solution spaces of NLP models, numerical stability of the MDWDF network is well received at all time by the satisfaction of the Courant-Friedrichs-Levy stability criterion with the least restriction. In particular, optimum of the NLP has led to the optimality of the network in terms of effectively and accurately predicting the desired fundamental frequency, and thus to give an insight into the robustness of the network by looking at the distribution of system energies. To further explore the application of the optimum network, more numerical examples are engaged in efforts to achieve a qualitative understanding of the behavior of the laminar system. These are carried out by investigating various effects based on different stacking sequences, stiffness and span-to-thickness ratios, mode shapes and boundary conditions. Results are scrupulously validated by cross referencing with early published works, which show that the present method is in excellent agreement with other numerical and analytical methods.

Bromamine Decomposition Revisited: A Holistic Approach for Analyzing Acid and Base Catalysis Kinetics.

PubMed

Wahman, David G; Speitel, Gerald E; Katz, Lynn E

2017-11-21

Chloramine chemistry is complex, with a variety of reactions occurring in series and parallel and many that are acid or base catalyzed, resulting in numerous rate constants. Bromide presence increases system complexity even further with possible bromamine and bromochloramine formation. Therefore, techniques for parameter estimation must address this complexity through thoughtful experimental design and robust data analysis approaches. The current research outlines a rational basis for constrained data fitting using Brønsted theory, application of the microscopic reversibility principle to reversible acid or base catalyzed reactions, and characterization of the relative significance of parallel reactions using fictive product tracking. This holistic approach was used on a comprehensive and well-documented data set for bromamine decomposition, allowing new interpretations of existing data by revealing that a previously published reaction scheme was not robust; it was not able to describe monobromamine or dibromamine decay outside of the conditions for which it was calibrated. The current research's simplified model (3 reactions, 17 constants) represented the experimental data better than the previously published model (4 reactions, 28 constants). A final model evaluation was conducted based on representative drinking water conditions to determine a minimal model (3 reactions, 8 constants) applicable for drinking water conditions.

Assessment of hemoglobin responsiveness to epoetin alfa in patients on hemodialysis using a population pharmacokinetic pharmacodynamic model.

PubMed

Wu, Liviawati; Mould, Diane R; Perez Ruixo, Juan Jose; Doshi, Sameer

2015-10-01

A population pharmacokinetic pharmacodynamic (PK/PD) model describing the effect of epoetin alfa on hemoglobin (Hb) response in hemodialysis patients was developed. Epoetin alfa pharmacokinetics was described using a linear 2-compartment model. PK parameter estimates were similar to previously reported values. A maturation-structured cytokinetic model consisting of 5 compartments linked in a catenary fashion by first-order cell transfer rates following a zero-order input process described the Hb time course. The PD model described 2 subpopulations, one whose Hb response reflected epoetin alfa dosing and a second whose response was unrelated to epoetin alfa dosing. Parameter estimates from the PK/PD model were physiologically reasonable and consistent with published reports. Numerical and visual predictive checks using data from 2 studies were performed. The PK and PD of epoetin alfa were well described by the model. © 2015, The American College of Clinical Pharmacology.

Automation process for morphometric analysis of volumetric CT data from pulmonary vasculature in rats.

PubMed

Shingrani, Rahul; Krenz, Gary; Molthen, Robert

2010-01-01

With advances in medical imaging scanners, it has become commonplace to generate large multidimensional datasets. These datasets require tools for a rapid, thorough analysis. To address this need, we have developed an automated algorithm for morphometric analysis incorporating A Visualization Workshop computational and image processing libraries for three-dimensional segmentation, vascular tree generation and structural hierarchical ordering with a two-stage numeric optimization procedure for estimating vessel diameters. We combine this new technique with our mathematical models of pulmonary vascular morphology to quantify structural and functional attributes of lung arterial trees. Our physiological studies require repeated measurements of vascular structure to determine differences in vessel biomechanical properties between animal models of pulmonary disease. Automation provides many advantages including significantly improved speed and minimized operator interaction and biasing. The results are validated by comparison with previously published rat pulmonary arterial micro-CT data analysis techniques, in which vessels were manually mapped and measured using intense operator intervention. Published by Elsevier Ireland Ltd.

Comprehensive evaluation of non-hybrid genome assembly tools for third-generation PacBio long-read sequence data.

PubMed

Jayakumar, Vasanthan; Sakakibara, Yasubumi

2017-11-03

Long reads obtained from third-generation sequencing platforms can help overcome the long-standing challenge of the de novo assembly of sequences for the genomic analysis of non-model eukaryotic organisms. Numerous long-read-aided de novo assemblies have been published recently, which exhibited superior quality of the assembled genomes in comparison with those achieved using earlier second-generation sequencing technologies. Evaluating assemblies is important in guiding the appropriate choice for specific research needs. In this study, we evaluated 10 long-read assemblers using a variety of metrics on Pacific Biosciences (PacBio) data sets from different taxonomic categories with considerable differences in genome size. The results allowed us to narrow down the list to a few assemblers that can be effectively applied to eukaryotic assembly projects. Moreover, we highlight how best to use limited genomic resources for effectively evaluating the genome assemblies of non-model organisms. © The Author 2017. Published by Oxford University Press.

Indexes of the proceedings for the nine symposia (international) on detonation, 1951--89

DOE Office of Scientific and Technical Information (OSTI.GOV)

Crane, S.L.; Deal, W.E.; Ramsay, J.B.

1993-01-01

The Proceedings of the nine Detonation Symposia have become the major archival source of information of international research in explosive phenomenology, theory, experimental techniques, numerical modeling, and high-rate reaction chemistry. In many cases, they contain the original reference or the only reference to major progress in the field. For some papers, the information is more complete than the complementary article appearing in a formal journal, yet for others, authors elected to publish only an abstract in the Proceedings. For the large majority of papers, the Symposia Proceedings provide the only published reference to a body of work. This report indexesmore » the nine existing Proceedings of the Detonation Symposia by paper titles, topic phrases, authors, and first appearance of acronyms and code names.« less

Indexes of the Proceedings for the Ten International Symposia on Detonation 1951-93

DOE Office of Scientific and Technical Information (OSTI.GOV)

Deal, William E.; Ramsay, John B.; Roach, Alita M.

1998-09-01

The Proceedings of the ten Detonation Symposia have become the major archival source of information of international research in explosive phenomenology, theory, experimental techniques, numerical modeling, and high-rate reaction chemistry. In many cases, they contain the original reference or the only reference to major progress in the field. For some papers, the information is more complete than the complementary article appearing in a formal journal; yet for others, authors elected to publish only an abstract in the Proceedings. For the large majority of papers, the Symposia Proceedings provide the only published reference to a body of work. This report indexesmore » the ten existing Proceedings of the Detonation Symposia by paper titles, topic phrases, authors, and first appearance of acronyms and code names.« less

Developmental framework to validate future designs of ballistic neck protection.

PubMed

Breeze, J; Midwinter, M J; Pope, D; Porter, K; Hepper, A E; Clasper, J

2013-01-01

The number of neck injuries has increased during the war in Afghanistan, and they have become an appreciable source of mortality and long-term morbidity for UK servicemen. A three-dimensional numerical model of the neck is necessary to allow simulation of penetrating injury from explosive fragments so that the design of body armour can be optimal, and a framework is required to validate and describe the individual components of this program. An interdisciplinary consensus group consisting of military maxillofacial surgeons, and biomedical, physical, and material scientists was convened to generate the components of the framework, and as a result it incorporates the following components: analysis of deaths and long-term morbidity, assessment of critical cervical structures for incorporation into the model, characterisation of explosive fragments, evaluation of the material of which the body armour is made, and mapping of the entry sites of fragments. The resulting numerical model will simulate the wound tract produced by fragments of differing masses and velocities, and illustrate the effects of temporary cavities on cervical neurovascular structures. Using this framework, a new shirt to be worn under body armour that incorporates ballistic cervical protection has been developed for use in Afghanistan. New designs of the collar validated by human factors and assessment of coverage are currently being incorporated into early versions of the numerical model. The aim of this paper is to describe this developmental framework and provide an update on the current progress of its individual components. Crown Copyright © 2012. Published by Elsevier Ltd. All rights reserved.

Development of a Higher Order Laminate Theory for Modeling Composites with Induced Strain Actuators

NASA Technical Reports Server (NTRS)

Chattopadhyay, Aditi; Seeley, Charles E.

1996-01-01

A refined higher order plate theory is developed to investigate the actuation mechanism of piezoelectric materials surface bonded or embedded in composite laminates. The current analysis uses a displacement field which accurately accounts for transverse shear stresses. Some higher order terms are identified by using the conditions that shear stresses vanish at all free surfaces. Therefore, all boundary conditions for displacements and stresses are satisfied in the present theory. The analysis is implemented using the finite element method which provides a convenient means to construct a numerical solution due to the discrete nature of the actuators. The higher order theory is computationally less expensive than a full three dimensional analysis. The theory is also shown to agree well with published experimental results. Numerical examples are presented for composite plates with thicknesses ranging from thin to very thick.

A model for the coupling of the Greater Bairam and local environmental factors in promoting Rift-Valley Fever epizootics in Egypt.

PubMed

Gil, H; Qualls, W A; Cosner, C; DeAngelis, D L; Hassan, A; Gad, A M; Ruan, S; Cantrell, S R; Beier, J C

2016-01-01

Rift-Valley Fever (RVF) is a zoonotic mosquito-borne disease in Africa and the Arabian Peninsula. Drivers for this disease vary by region and are not well understood for North African countries such as Egypt. A deeper understanding of RVF risk factors would inform disease management policies. The present study employs mathematical and computational modeling techniques to ascertain the extent to which the severity of RVF epizootics in Egypt differs depending on the interaction between imported ruminant and environmentally-constrained mosquito populations. An ordinary differential system of equations, a numerical model, and an individual-based model (IBM) were constructed to represent RVF disease dynamics between localized mosquitoes and ruminants being imported into Egypt for the Greater Bairam. Four cases, corresponding to the Greater Bairam's occurrence during distinct quarters of the solar year, were set up in both models to assess whether the different season-associated mosquito populations present during the Greater Bairam resulted in RVF epizootics of variable magnitudes. The numerical model and the IBM produced nearly identical results: ruminant and mosquito population plots for both models were similar in shape and magnitude for all four cases. In both models, all four cases differed in the severity of their corresponding simulated RVF epizootics. The four cases, ranked by the severity of the simulated RVF epizootics in descending order, correspond with the occurrence of the Greater Bairam on the following months: July, October, April, and January. The numerical model was assessed for sensitivity with respect to parameter values and exhibited a high degree of robustness. Limiting the importation of infected ruminants beginning one month prior to the Greater Bairam festival (on years in which the festival falls between the months of July and October: 2014-2022) might be a feasible way of mitigating future RVF epizootics in Egypt. Copyright © 2015 The Royal Society for Public Health. Published by Elsevier Ltd. All rights reserved.

Weak Vertical Surface Movement Caused by the Ascent of the Emeishan Mantle Anomaly

NASA Astrophysics Data System (ADS)

Zhu, Jiang; Zhang, Zhaochong; Reichow, Marc K.; Li, Hongbo; Cai, Wenchang; Pan, Ronghao

2018-02-01

Prevailing mantle plume models reveal that the roles of plume-lithosphere interactions in shaping surface topography are complex and controversial, and also difficult to test. The exposed and complete strata in the Emeishan large igneous province (LIP) recorded abundant paleoenvironmental information associated with preeruptions and syneruptions, attracting numerous workers to this province to test these models. Despite intensified research these models are still strongly debated. This study represents an extensive field investigation combining new and previously published data from the Emeishan LIP to further seek information on plume-induced topographic variations. Our results indicate that there are inconspicuous vertical motions of the surface topography during the ascent of mantle plume, and a significant surface subsidence occurred at the early stage of the volcanism that has a significantly positive correlation with the thickness of local lavas, and the topographic uplift emerged in the late stage of the volcanism. Our studies provide key geological and geochemical evidence that the ascent of the Emeishan plume is unable to drive a significant surface uplift, owing to the plume containing numerous entrained bodies of dense recycled oceanic crust (10-20%) that can significantly reduce plume buoyancy. The significant surface subsidence maybe linked to a significant loss of thermal buoyancy due to the release of heat, which, accompanied by rapid loading of numerous dense erupted lava and a strong lithospheric flexure, also lead to a later synchronous and significant surface subsidence in the Emeishan LIP.

Biomechanical and optical behavior of human corneas before and after photorefractive keratectomy.

PubMed

Sánchez, Paolo; Moutsouris, Kyros; Pandolfi, Anna

2014-06-01

To evaluate numerically the biomechanical and optical behavior of human corneas and quantitatively estimate the changes in refractive power and stress caused by photorefractive keratectomy (PRK). Athineum Refractive Center, Athens, Greece, and Politecnico di Milano, Milan, Italy. Retrospective comparative interventional cohort study. Corneal topographies of 10 human eyes were taken with a scanning-slit corneal topographer (Orbscan II) before and after PRK. Ten patient-specific finite element models were created to estimate the strain and stress fields in the cornea in preoperative and postoperative configurations. The biomechanical response in postoperative eyes was computed by directly modeling the postoperative geometry from the topographer and by reproducing the corneal ablation planned for the PRK with a numerical reprofiling procedure. Postoperative corneas were more compliant than preoperative corneas. In the optical zone, corneal thinning decreased the mechanical stiffness, causing local resteepening and making the central refractive power more sensitive to variations in intraocular pressure (IOP). At physiologic IOP, the postoperative corneas had a mean 7% forward increase in apical displacement and a mean 20% increase in the stress components at the center of the anterior surface over the preoperative condition. Patient-specific numerical models of the cornea can provide quantitative information on the changes in refractive power and in the stress field caused by refractive surgery. No author has a financial or proprietary interest in any material or method mentioned. Copyright © 2014 ASCRS and ESCRS. Published by Elsevier Inc. All rights reserved.

Current Density Scaling in Electrochemical Flow Capacitors

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hoyt, NC; Wainright, JS; Savinell, RF

Electrochemical flow capacitors (EFCs) are a recently developed energy storage technology. One of the principal performance metrics of an EFC is the steady-state electrical current density that it can accept or deliver. Numerical models exist to predict this performance for specific cases, but here we present a study of how the current varies with respect to the applied cell voltage, flow rate, cell dimensions, and slurry properties using scaling laws. The scaling relationships are confirmed by numerical simulations and then subsequently by comparison to results from symmetric cell EFC experiments. This modeling approach permits the delimitation of three distinct operationalmore » regimes dependent on the values of two nondimensional combinations of the pertinent variables (specifically, a capacitive Graetz number and a conductivity ratio). Lastly, the models and nondimensional numbers are used to provide design guidance in terms of criteria for proper EFC operation. (C) The Author(s) 2015. Published by ECS. This is an open access article distributed under the terms of the Creative Commons Attribution 4.0 License (CC BY, http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse of the work in any medium, provided the original work is properly cited. All rights reserved.« less

A Simple Geometrical Model for Calculation of the Effective Emissivity in Blackbody Cylindrical Cavities

NASA Astrophysics Data System (ADS)

De Lucas, Javier

2015-03-01

A simple geometrical model for calculating the effective emissivity in blackbody cylindrical cavities has been developed. The back ray tracing technique and the Monte Carlo method have been employed, making use of a suitable set of coordinates and auxiliary planes. In these planes, the trajectories of individual photons in the successive reflections between the cavity points are followed in detail. The theoretical model is implemented by using simple numerical tools, programmed in Microsoft Visual Basic for Application and Excel. The algorithm is applied to isothermal and non-isothermal diffuse cylindrical cavities with a lid; however, the basic geometrical structure can be generalized to a cylindro-conical shape and specular reflection. Additionally, the numerical algorithm and the program source code can be used, with minor changes, for determining the distribution of the cavity points, where photon absorption takes place. This distribution could be applied to the study of the influence of thermal gradients on the effective emissivity profiles, for example. Validation is performed by analyzing the convergence of the Monte Carlo method as a function of the number of trials and by comparison with published results of different authors.

NATIONAL GEODATABASE OF TIDAL STREAM POWER RESOURCE IN USA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Smith, Brennan T; Neary, Vincent S; Stewart, Kevin M

2012-01-01

A geodatabase of tidal constituents is developed to present the regional assessment of tidal stream power resource in the USA. Tidal currents are numerically modeled with the Regional Ocean Modeling System (ROMS) and calibrated with the available measurements of tidal current speeds and water level surfaces. The performance of the numerical model in predicting the tidal currents and water levels is assessed by an independent validation. The geodatabase is published on a public domain via a spatial database engine with interactive tools to select, query and download the data. Regions with the maximum average kinetic power density exceeding 500 W/m2more » (corresponding to a current speed of ~1 m/s), total surface area larger than 0.5 km2 and depth greater than 5 m are defined as hotspots and documented. The regional assessment indicates that the state of Alaska (AK) has the largest number of locations with considerably high kinetic power density, followed by, Maine (ME), Washington (WA), Oregon (OR), California (CA), New Hampshire (NH), Massachusetts (MA), New York (NY), New Jersey (NJ), North and South Carolina (NC, SC), Georgia (GA), and Florida (FL).« less

Coupled electric fields in photorefractive driven liquid crystal hybrid cells - theory and numerical simulation

NASA Astrophysics Data System (ADS)

Moszczyński, P.; Walczak, A.; Marciniak, P.

2016-12-01

In cyclic articles previously published we described and analysed self-organized light fibres inside a liquid crystalline (LC) cell contained photosensitive polymer (PP) layer. Such asymmetric LC cell we call a hybrid LC cell. Light fibre arises along a laser beam path directed in plane of an LC cell. It means that a laser beam is parallel to photosensitive layer. We observed the asymmetric LC cell response on an external driving field polarization. Observation has been done for an AC field first. It is the reason we decided to carry out a detailed research for a DC driving field to obtain an LC cell response step by step. The properly prepared LC cell has been built with an isolating layer and garbage ions deletion. We proved by means of a physical model, as well as a numerical simulation that LC asymmetric response strongly depends on junction barriers between PP and LC layers. New parametric model for a junction barrier on PP/LC boundary has been proposed. Such model is very useful because of lack of proper conductivity and charge carriers of band structure data on LC material.

A virtual observatory for photoionized nebulae: the Mexican Million Models database (3MdB).

NASA Astrophysics Data System (ADS)

Morisset, C.; Delgado-Inglada, G.; Flores-Fajardo, N.

2015-04-01

Photoionization models obtained with numerical codes are widely used to study the physics of the interstellar medium (planetary nebulae, HII regions, etc). Grids of models are performed to understand the effects of the different parameters used to describe the regions on the observables (mainly emission line intensities). Most of the time, only a small part of the computed results of such grids are published, and they are sometimes hard to obtain in a user-friendly format. We present here the Mexican Million Models dataBase (3MdB), an effort to resolve both of these issues in the form of a database of photoionization models, easily accessible through the MySQL protocol, and containing a lot of useful outputs from the models, such as the intensities of 178 emission lines, the ionic fractions of all the ions, etc. Some examples of the use of the 3MdB are also presented.

Modeling variably saturated subsurface solute transport with MODFLOW-UZF and MT3DMS.

PubMed

Morway, Eric D; Niswonger, Richard G; Langevin, Christian D; Bailey, Ryan T; Healy, Richard W

2013-03-01

The MT3DMS groundwater solute transport model was modified to simulate solute transport in the unsaturated zone by incorporating the unsaturated-zone flow (UZF1) package developed for MODFLOW. The modified MT3DMS code uses a volume-averaged approach in which Lagrangian-based UZF1 fluid fluxes and storage changes are mapped onto a fixed grid. Referred to as UZF-MT3DMS, the linked model was tested against published benchmarks solved analytically as well as against other published codes, most frequently the U.S. Geological Survey's Variably-Saturated Two-Dimensional Flow and Transport Model. Results from a suite of test cases demonstrate that the modified code accurately simulates solute advection, dispersion, and reaction in the unsaturated zone. Two- and three-dimensional simulations also were investigated to ensure unsaturated-saturated zone interaction was simulated correctly. Because the UZF1 solution is analytical, large-scale flow and transport investigations can be performed free from the computational and data burdens required by numerical solutions to Richards' equation. Results demonstrate that significant simulation runtime savings can be achieved with UZF-MT3DMS, an important development when hundreds or thousands of model runs are required during parameter estimation and uncertainty analysis. Three-dimensional variably saturated flow and transport simulations revealed UZF-MT3DMS to have runtimes that are less than one tenth of the time required by models that rely on Richards' equation. Given its accuracy and efficiency, and the wide-spread use of both MODFLOW and MT3DMS, the added capability of unsaturated-zone transport in this familiar modeling framework stands to benefit a broad user-ship. Published 2012. This article is a U.S. Government work and is in the public domain in the USA.

Numerical Results from Three Surveys on Book Marketing and Selection. A Publisher/Library Forum.

ERIC Educational Resources Information Center

American Library Association, Chicago, IL. Resources and Technical Services Div.

Publishers, book wholesalers, and librarians were surveyed in early 1974 to provide background data for a program at the American Library Association Annual Conference 1975. Publishers were queried about their relations with libraries, promotional activities (including relations with review media, direct mailings, and advertising), and sales to…

(Re)Storying Obama: An Examination of Recently Published Informational Texts

ERIC Educational Resources Information Center

May, Laura A.; Holbrook, Teri; Meyers, Laura E.

2010-01-01

American publishers have published numerous children's books about Barack Obama over the past several years; most take the form of informational biographies. This article reports on a research project aimed at how these books incorporate sociohistorical narratives, particularly those related to the civil rights movement. Though the features of the…

A numerical analysis of forces exerted by laminar flow on spreading cells in a parallel plate flow chamber assay.

PubMed

Olivier, L A; Truskey, G A

1993-10-01

Exposure of spreading anchorage-dependent cells to laminar flow is a common technique to measure the strength of cell adhesion. Since cells protrude into the flow stream, the force exerted by the fluid on the cells is a function of cell shape. To assess the relationship between cell shape and the hydrodynamic force on adherent cells, we obtained numerical solutions of the velocity and stress fields around bovine aortic endothelial cells during various stages of spreading and calculated the force required to detach the cells. Morphometric parameters were obtained from light and scanning electron microscopy measurements. Cells were assumed to have a constant volume, but the surface area increased during spreading until the membrane was stretched taut. Two-dimensional models of steady flow were generated using the software packages ANSYS (mesh generation) and FIDAP (problem solution). The validity of the numerical results was tested by comparison with published results for a semicircle in contact with the surface. The drag force and torque were greatest for round cells making initial contact with the surface. During spreading, the drag force and torque declined by factors of 2 and 20, respectively. The calculated forces and moments were used in adhesion models to predict the wall shear stress at which the cells detached. Based upon published values for the bond force and receptor number, round cells should detach at shear stresses between 2.5 and 6 dyn/cm(2), whereas substantially higher stresses are needed to detach spreading and fully spread cells. Results from the simulations indicate that (1) the drag force varies little with cell shape whereas the torque is very sensitive to cell shape, and (2) the increase in the strength of adhesion during spreading is due to increased contact area and receptor densities within the contact area. (c) 1993 John Wiley & Sons, Inc.

Numerical modeling of flow focusing: Quantitative characterization of the flow regimes

NASA Astrophysics Data System (ADS)

Mamet, V.; Namy, P.; Dedulle, J.-M.

2017-09-01

Among droplet generation technologies, the flow focusing technique is a major process due to its control, stability, and reproducibility. In this process, one fluid (the continuous phase) interacts with another one (the dispersed phase) to create small droplets. Experimental assays in the literature on gas-liquid flow focusing have shown that different jet regimes can be obtained depending on the operating conditions. However, the underlying physical phenomena remain unclear, especially mechanical interactions between the fluids and the oscillation phenomenon of the liquid. In this paper, based on published studies, a numerical diphasic model has been developed to take into consideration the mechanical interaction between phases, using the Cahn-Hilliard method to monitor the interface. Depending on the liquid/gas inputs and the geometrical parameters, various regimes can be obtained, from a steady state regime to an unsteady one with liquid oscillation. In the dispersed phase, the model enables us to compute the evolution of fluid flow, both in space (size of the recirculation zone) and in time (period of oscillation). The transition between unsteady and stationary regimes is assessed in relation to liquid and gas dimensionless numbers, showing the existence of critical thresholds. This model successfully highlights, qualitatively and quantitatively, the influence of the geometry of the nozzle, in particular, its inner diameter.

Fukushima Daiichi Nuclear Plant accident: Atmospheric and oceanic impacts over the five years.

PubMed

Hirose, Katsumi

2016-06-01

The Fukushima Daiichi Nuclear Plant (FDNPP) accident resulted in huge environmental and socioeconomic impacts to Japan. To document the actual environmental and socioeconomic effects of the FDNPP accident, we describe here atmospheric and marine contamination due to radionuclides released from the FDNPP accident using papers published during past five years, in which temporal and spatial variations of FDNPP-derived radionuclides in air, deposition and seawater and their mapping are recorded by local, regional and global monitoring activities. High radioactivity-contaminated area in land were formed by the dispersion of the radioactive cloud and precipitation, depending on land topography and local meteorological conditions, whereas extremely high concentrations of (131)I and radiocesium in seawater occurred due to direct release of radioactivity-contaminated stagnant water in addition to atmospheric deposition. For both of atmosphere and ocean, numerical model simulations, including local, regional and global-scale modeling, were extensively employed to evaluate source terms of the FDNPP-derived radionuclides from the monitoring data. These models also provided predictions of the dispersion and high deposition areas of the FDNPP-derived radionuclides. However, there are significant differences between the observed and simulated values. Then, the monitoring data would give a good opportunity to improve numerical modeling. Copyright © 2016 Elsevier Ltd. All rights reserved.

Research on strategy marine noise map based on i4ocean platform: Constructing flow and key approach

NASA Astrophysics Data System (ADS)

Huang, Baoxiang; Chen, Ge; Han, Yong

2016-02-01

Noise level in a marine environment has raised extensive concern in the scientific community. The research is carried out on i4Ocean platform following the process of ocean noise model integrating, noise data extracting, processing, visualizing, and interpreting, ocean noise map constructing and publishing. For the convenience of numerical computation, based on the characteristics of ocean noise field, a hybrid model related to spatial locations is suggested in the propagation model. The normal mode method K/I model is used for far field and ray method CANARY model is used for near field. Visualizing marine ambient noise data is critical to understanding and predicting marine noise for relevant decision making. Marine noise map can be constructed on virtual ocean scene. The systematic marine noise visualization framework includes preprocessing, coordinate transformation interpolation, and rendering. The simulation of ocean noise depends on realistic surface. Then the dynamic water simulation gird was improved with GPU fusion to achieve seamless combination with the visualization result of ocean noise. At the same time, the profile and spherical visualization include space, and time dimensionality were also provided for the vertical field characteristics of ocean ambient noise. Finally, marine noise map can be published with grid pre-processing and multistage cache technology to better serve the public.

Digital data set that describe aquifer characteristics of the Antlers aquifer in southeastern Oklahoma

USGS Publications Warehouse

Abbott, Marvin M.; Runkle, D.L.; Rea, Alan

1997-01-01

ARC/INFO export and nonproprietary format file This diskette contains digitized aquifer boundaries and maps of hydraulic conductivity, recharge, and ground-water level elevation contours for the Antlers aquifer in southeastern Oklahoma. The Early Cretaceous-age Antlers Sandstone is an important source of water in an area that underlies about 4,400-square miles of all or part of Atoka, Bryan, Carter, Choctaw, Johnston, Love, Marshall, McCurtain, and Pushmataha Counties. The Antlers aquifer consists of sand, clay, conglomerate, and limestone in the outcrop area. The upper part of the Antlers aquifer consists of beds of sand, poorly cemented sandstone, sandy shale, silt, and clay. The Antlers aquifer is unconfined where it outcrops in about an 1,800-square-mile area. The recharge, hydraulic conductivity, and aquifer boundaries data sets include the outcrop area of the Antlers Sandstone in Oklahoma and areas where the Antlers is overlain by alluvial and terrace deposits and a few small thin outcrops of the Goodland Limestone. Most of the lines in these data sets were extracted from published digital geology data sets. Some of the lines were interpolated in areas where the Antlers aquifer is overlain by alluvial and terrace deposits near streams and rivers. The interpolated lines are very similar to the aquifer boundaries published in a ground-water modeling report for the Antlers aquifer. The maps from which this data set was derived were scanned or digitized from maps published at a scale of 1:250,000. The water-level elevation contours were digitized from a map at a scale of 1:250,000 that was used to prepare the final map published in a ground-water flow model report. Hydraulic conductivity and recharge values also are published in the ground-water model report for the Antlers aquifer. Ground-water flow models are numerical representations that simplify and aggregate natural systems. Models are not unique; different combinations of aquifer characteristics may produce similar results. Therefore, values of hydraulic conductivity and recharge used in the model and presented in this data set are not precise, but are within a reasonable range when compared to independently collected data.

Robust master-slave synchronization for general uncertain delayed dynamical model based on adaptive control scheme.

PubMed

Wang, Tianbo; Zhou, Wuneng; Zhao, Shouwei; Yu, Weiqin

2014-03-01

In this paper, the robust exponential synchronization problem for a class of uncertain delayed master-slave dynamical system is investigated by using the adaptive control method. Different from some existing master-slave models, the considered master-slave system includes bounded unmodeled dynamics. In order to compensate the effect of unmodeled dynamics and effectively achieve synchronization, a novel adaptive controller with simple updated laws is proposed. Moreover, the results are given in terms of LMIs, which can be easily solved by LMI Toolbox in Matlab. A numerical example is given to illustrate the effectiveness of the method. Copyright © 2013 ISA. Published by Elsevier Ltd. All rights reserved.

Critiques of the seismic hypothesis and the vegetation stabilization hypothesis for the formation of Mima mounds along the western coast of the U.S.

NASA Astrophysics Data System (ADS)

Gabet, Emmanuel J.; Burnham, Jennifer L. Horwath; Perron, J. Taylor

2016-09-01

A recent paper published in Geomorphology by Gabet et al. (2014) presents the results of a numerical model supporting the hypothesis that burrowing mammals build Mima mounds - small, densely packed hillocks found primarily in the western United States. The model is based on field observations and produces realistic-looking mounds with spatial distributions similar to real moundfields. Alternative explanations have been proposed for these Mima mounds, including formation by seismic shaking and vegetation-controlled erosion and deposition. In this short communication, we present observations from moundfields in the coastal states of the western U.S. that are incompatible with these alternative theories.

Annual Research Briefs, 1990

NASA Technical Reports Server (NTRS)

1991-01-01

The 1990 annual progress reports of the Research Fellows and students of the Center for Turbulent Research (CTR) are included. It is intended primarily as a contractor report to NASA, Ames Research Center. In addition, numerous CTR Manuscript Reports were published last year. The purpose of the CTR Manuscript Series is to expedite the dissemination of research results by the CTR staff. The CTR is devoted to the fundamental study of turbulent flow; its objectives are to produce advances in physical understanding of turbulence, in turbulence modeling and simulation, and in turbulence control.

Exact solutions for the selection-mutation equilibrium in the Crow-Kimura evolutionary model.

PubMed

Semenov, Yuri S; Novozhilov, Artem S

2015-08-01

We reformulate the eigenvalue problem for the selection-mutation equilibrium distribution in the case of a haploid asexually reproduced population in the form of an equation for an unknown probability generating function of this distribution. The special form of this equation in the infinite sequence limit allows us to obtain analytically the steady state distributions for a number of particular cases of the fitness landscape. The general approach is illustrated by examples; theoretical findings are compared with numerical calculations. Copyright © 2015. Published by Elsevier Inc.

MHD Modeling of the Interaction of the Solar Wind With Venus

NASA Technical Reports Server (NTRS)

Steinolfson, R. S.

1996-01-01

The primary objective of this research program is to improve our understanding of the physical processes occurring in the interaction of the solar wind with Venus. This will be accomplished through the use of numerical solutions of the two- and three-dimensional magnetohydrodynamic (MHD) equations and through comparisons of the computed results with available observations. A large portion of this effort involves the study of processes due to the presence of the magnetic field and the effects of mass loading. Published papers are included in the appendix.

Long-term evolution of the western South Atlantic passive continental margin in a key area of SE Brazil revealed by thermokinematic numerical modeling using the software code Pecube

NASA Astrophysics Data System (ADS)

Stippich, Christian; Krob, Florian; Glasmacher, Ulrich A.; Hackspacher, Peter C.

2016-04-01

The aim of the research is to quantify the long-term evolution of the western South Atlantic passive continental margin (SAPCM) in SE-Brazil. Excellent onshore outcrop conditions and extensive pre-rift to post-rift archives between São Paulo and Laguna allow a high precision quantification of exhumation, and rock uplift rates, influencing physical parameters, long-term acting forces, and process-response systems. Research will integrate published1 and partly published thermochronological data from Brazil, and test lately published new concepts on causes of long-term landscape and lithospheric evolution in southern Brazil. Six distinct lithospheric blocks (Laguna, Florianópolis, Curitiba, Ilha Comprida, Peruibe and Santos), which are separated by fracture zones1 are characterized by individual thermochronological age spectra. Furthermore, the thermal evolution derived by numerical modeling indicates variable post-rift exhumation histories of these blocks. In this context, we will provide information on the causes for the complex exhumation history of the Florianópolis, and adjacent blocks. The climate-continental margin-mantle coupled process-response system is caused by the interaction between endogenous and exogenous forces, which are related to the mantle-process driven rift - drift - passive continental margin evolution of the South Atlantic, and the climate change since the Early/Late Cretaceous climate maximum. Special emphasis will be given to the influence of long-living transform faults such as the Florianopolis Fracture Zone (FFZ) on the long-term topography evolution of the SAPCM's. A long-term landscape evolution model with process rates will be achieved by thermo-kinematic 3-D modeling (software code PECUBE2,3 and FastScape4). Testing model solutions obtained for a multidimensional parameter space against the real thermochronological and geomorphological data set, the most likely combinations of parameter rates, and values can be constrained. The data and models will allow separating the exogenous and endogenous forces and their process rates. References 1. Karl, M., Glasmacher, U.A., Kollenz, S., Franco-Magalhaes, A.O.B., Stockli, D.F., Hackspacher, P., 2013. Evolution of the South Atlantic passive continental margin in southern Brazil derived from zircon and apatite (U-Th-Sm)/He and fission-track data. Tectonophysics, Volume 604, Pages 224-244. 2. Braun, J., 2003. Pecube: A new finite element code to solve the 3D heat transport equation including the effects of a time-varying, finite amplitude surface topography. Computers and Geosciences, v.29, pp.787-794. 3. Braun, J., van der Beek, P., Valla, P., Robert, X., Herman, F., Goltzbacj, C., Pedersen, V., Perry, C., Simon-Labric, T., Prigent, C. 2012. Quantifying rates of landscape evolution and tectonic processes by thermochronology and numerical modeling of crustal heat transport using PECUBE. Tectonophysics, v.524-525, pp.1-28. 4. Braun, J. and Willett, S.D., 2013. A very efficient, O(n), implicit and parallel method to solve the basic stream power law equation governing fluvial incision and landscape evolution. Geomorphology, v.180-181, 170-179.

Overview: Applications of numerical optimization methods to helicopter design problems

NASA Technical Reports Server (NTRS)

Miura, H.

1984-01-01

There are a number of helicopter design problems that are well suited to applications of numerical design optimization techniques. Adequate implementation of this technology will provide high pay-offs. There are a number of numerical optimization programs available, and there are many excellent response/performance analysis programs developed or being developed. But integration of these programs in a form that is usable in the design phase should be recognized as important. It is also necessary to attract the attention of engineers engaged in the development of analysis capabilities and to make them aware that analysis capabilities are much more powerful if integrated into design oriented codes. Frequently, the shortcoming of analysis capabilities are revealed by coupling them with an optimization code. Most of the published work has addressed problems in preliminary system design, rotor system/blade design or airframe design. Very few published results were found in acoustics, aerodynamics and control system design. Currently major efforts are focused on vibration reduction, and aerodynamics/acoustics applications appear to be growing fast. The development of a computer program system to integrate the multiple disciplines required in helicopter design with numerical optimization technique is needed. Activities in Britain, Germany and Poland are identified, but no published results from France, Italy, the USSR or Japan were found.

Cattaneo-Christov heat flux effect on hydromagnetic radiative Oldroyd-B liquid flow across a cone/wedge in the presence of cross-diffusion

NASA Astrophysics Data System (ADS)

Gnaneswara Reddy, M.

2018-01-01

The present article scrutinizes the prominent characteristics of the Cattaneo-Christov heat flux on magnetohydrodynamic Oldroyd-B radiative liquid flow over two different geometries. The effects of cross-diffusion are considered in the modeling of species and energy equations. Similarity transformations are employed to transmute the governing flow, species and energy equations into a set of nonlinear ordinary differential equations (ODEs) with the appropriate boundary conditions. The final system of dimensionless equations is resolved numerically by utilizing the R-K-Fehlberg numerical approach. The behaviors of all physical pertinent flow controlling variables on the three flow distributions are analyzed through plots. The obtained numerical results have been compared with earlier published work and reveal good agreement. The Deborah numbers γ1 and γ2 have quite opposite effects on velocity and energy fields. The increase in thermal relaxation parameter β corresponds to a decrease in the fluid temperature. This study has salient applications in heat and mass transfer manufacturing system processing for energy conversion.

Mechanical stability of propped hydraulic fractures: A numerical study

DOE Office of Scientific and Technical Information (OSTI.GOV)

Asgian, M.I.; Cundall, P.A.; Brady, B.H.

1995-03-01

Proppant is sometimes produced along with hydrocarbons in hydraulically fractured petroleum wells. Sometimes 10% to 20% of the proppant is backproduced, which can lead to damaged equipment and downtime. Furthermore, proppant flowback can lead to a substantial loss of fracture conductivity. A numerical study was conducted to help understand what conditions are likely to lead to proppant flowback. In the simulations, the mechanical interaction of a larger number (several thousand) individual proppant grains was modeled with a distinct-element-type code. The numerical simulations show that hydraulic fractures propped with cohesionless, unbonded proppant fail under closure stress at a critical ratio ofmore » mean grain diameter to fracture width. This is consistent with published laboratory studies. The simulations identify the mechanism (arch failure) that triggers the mechanical instability and also show that the primary way that drawdowns (less than {approx} 75 psi/ft) affect proppant flowback is to transport loose proppant grains in front of the stable arch to the wellbore. Drawdowns > 75 psi/ft are sufficient to destabilize the arch and to cause progressive failure of the propped fractures.« less

Hydromagnetic flow of a Cu-water nanofluid past a moving wedge with viscous dissipation

NASA Astrophysics Data System (ADS)

M. Salem, A.; Galal, Ismail; Rania, Fathy

2014-04-01

A numerical study is performed to investigate the flow and heat transfer at the surface of a permeable wedge immersed in a copper (Cu)-water-based nanofluid in the presence of magnetic field and viscous dissipation using a nanofluid model proposed by Tiwari and Das (Tiwari I K and Das M K 2007 Int. J. Heat Mass Transfer 50 2002). A similarity solution for the transformed governing equation is obtained, and those equations are solved by employing a numerical shooting technique with a fourth-order Runge-Kutta integration scheme. A comparison with previously published work is carried out and shows that they are in good agreement with each other. The effects of velocity ratio parameter λ, solid volume fraction φ, magnetic field M, viscous dissipation Ec, and suction parameter Fw on the fluid flow and heat transfer characteristics are discussed. The unique and dual solutions for self-similar equations of the flow and heat transfer are analyzed numerically. Moreover, the range of the velocity ratio parameter for which the solution exists increases in the presence of magnetic field and suction parameter.

A bibliography on parallel and vector numerical algorithms

NASA Technical Reports Server (NTRS)

Ortega, James M.; Voigt, Robert G.; Romine, Charles H.

1988-01-01

This is a bibliography on numerical methods. It also includes a number of other references on machine architecture, programming language, and other topics of interest to scientific computing. Certain conference proceedings and anthologies which have been published in book form are also listed.

A bibliography on parallel and vector numerical algorithms

NASA Technical Reports Server (NTRS)

Ortega, J. M.; Voigt, R. G.

1987-01-01

This is a bibliography of numerical methods. It also includes a number of other references on machine architecture, programming language, and other topics of interest to scientific computing. Certain conference proceedings and anthologies which have been published in book form are listed also.

A bibliography on parallel and vector numerical algorithms

NASA Technical Reports Server (NTRS)

Ortega, James M.; Voigt, Robert G.; Romine, Charles H.

1990-01-01

This is a bibliography on numerical methods. It also includes a number of other references on machine architecture, programming language, and other topics of interest to scientific computing. Certain conference proceedings and anthologies which have been published in book form are also listed.

Research in applied mathematics, numerical analysis, and computer science

NASA Technical Reports Server (NTRS)

1984-01-01

Research conducted at the Institute for Computer Applications in Science and Engineering (ICASE) in applied mathematics, numerical analysis, and computer science is summarized and abstracts of published reports are presented. The major categories of the ICASE research program are: (1) numerical methods, with particular emphasis on the development and analysis of basic numerical algorithms; (2) control and parameter identification; (3) computational problems in engineering and the physical sciences, particularly fluid dynamics, acoustics, and structural analysis; and (4) computer systems and software, especially vector and parallel computers.

Effective wind speed estimation: Comparison between Kalman Filter and Takagi-Sugeno observer techniques.

PubMed

Gauterin, Eckhard; Kammerer, Philipp; Kühn, Martin; Schulte, Horst

2016-05-01

Advanced model-based control of wind turbines requires knowledge of the states and the wind speed. This paper benchmarks a nonlinear Takagi-Sugeno observer for wind speed estimation with enhanced Kalman Filter techniques: The performance and robustness towards model-structure uncertainties of the Takagi-Sugeno observer, a Linear, Extended and Unscented Kalman Filter are assessed. Hence the Takagi-Sugeno observer and enhanced Kalman Filter techniques are compared based on reduced-order models of a reference wind turbine with different modelling details. The objective is the systematic comparison with different design assumptions and requirements and the numerical evaluation of the reconstruction quality of the wind speed. Exemplified by a feedforward loop employing the reconstructed wind speed, the benefit of wind speed estimation within wind turbine control is illustrated. Copyright © 2015 ISA. Published by Elsevier Ltd. All rights reserved.

Stochastic Dynamical Model of a Growing Citation Network Based on a Self-Exciting Point Process

NASA Astrophysics Data System (ADS)

Golosovsky, Michael; Solomon, Sorin

2012-08-01

We put under experimental scrutiny the preferential attachment model that is commonly accepted as a generating mechanism of the scale-free complex networks. To this end we chose a citation network of physics papers and traced the citation history of 40 195 papers published in one year. Contrary to common belief, we find that the citation dynamics of the individual papers follows the superlinear preferential attachment, with the exponent α=1.25-1.3. Moreover, we show that the citation process cannot be described as a memoryless Markov chain since there is a substantial correlation between the present and recent citation rates of a paper. Based on our findings we construct a stochastic growth model of the citation network, perform numerical simulations based on this model and achieve an excellent agreement with the measured citation distributions.

Intraplate Stress Field in South America Derived from Earthquake Focal Mechanisms

NASA Astrophysics Data System (ADS)

Dias, F. L.; Assumpcao, M.

2017-12-01

We present an updated compilation of earthquake focal mechanisms in Brazil together with the sub-Andean region through more obtained solutions together with published results from the literature and catalogs of international agencies. Stress orientations from breakouts and in-situ measurements were also compiled. The focal mechanisms were classified according to WSM (World Stress Map) criteria.For Brazil, we have 82 earthquakes with the mechanism that has been determined since 1978, begin that three new from this study. Focal mechanisms in Brazil show reverse, strike-slip and normal faulting while all events in the sub-Andean region have reverse (majority) or strike-slip mechanisms. For sub-Andean region have reverse (majority) or strike-slip mechanisms. Normal mechanisms can be found only in high attitudes. The mechanisms were grouped by proximity to be inverted for the stress tensor. We use the bootstrap technique to analyze the stability of the tensor. In SE Brazil and the Chaco-Pantanal basins, S1 tends to be oriented roughly E-W with S2 approximately equal to S3. This stress pattern changes to purely compressional (both SHmax and Shmin larger than Sv) in the São Francisco craton. A rotation of SHmax from E-W to SE-NW is suggested towards the Amazon region. Along the Atlantic margin, the regional stresses are affected by coastal effects. This coastal effect tends to make SHmax parallel to the coastline and Shmin (usually S3) perpendicular to the coastline. Few breakout data and in-situ measurements are available in Brazil and are generally consistent with the pattern derived from the earthquake focal mechanisms. In the sub-Andean region, the intermediate principal stress (S2) is also compressional, a feature that is not always reproduced in numerical models published in the literature. In mid-plate South America stresses seem to vary in nature and orientation. Although numerical models of global lithospheric stresses tend to reproduce the main large-scale features in most mid-plate areas, the S1 rotation from E-W in SE Brazil to SE-NW in the Amazon region are not well explained by the current numerical models. This means that the observed stress pattern in mid-plate South America should provide new insights into upper mantle dynamics, distinct from current global convection models.

Prize of the best thesis 2015: Study of debris discs through state-of-the-art numerical modelling

NASA Astrophysics Data System (ADS)

Kral, Q.; Thébault, P.

2015-12-01

This proceeding summarises the thesis entitled ``Study of debris discs with a new generation numerical model'' by Quentin Kral, for which he obtained the prize of the best thesis in 2015. The thesis brought major contributions to the field of debris disc modelling. The main achievement is to have created, almost ex-nihilo, the first truly self-consistent numerical model able to simultaneously follow the coupled collisional and dynamical evolutions of debris discs. Such a code has been thought as being the ``Holy Grail'' of disc modellers for the past decade, and while several codes with partial dynamics/collisions coupling have been presented, the code developed in this thesis, called ``LIDT-DD'' is the first to achieve a full coupling. The LIDT-DD model, which is the first of a new-generation of fully self-consistent debris disc models is able to handle both planetesimals and dust and create new fragments after each collision. The main idea of LIDT-DD development was to merge into one code two approaches that were so far used separately in disc modelling, that is, an N-body algorithm to investigate the dynamics, and a statistical scheme to explore the collisional evolution. This complex scheme is not straightforward to develop as there are major difficulties to overcome: 1) collisions in debris discs are highly destructive and produce clouds of small fragments after each single impact, 2) the smallest (and most numerous) of these fragments have a strongly size-dependent dynamics because of the radiation pressure, and 3) the dust usually observed in discs is precisely these smallest grains. These extreme constraints had so far prevented all previous attempts at developing self-consistent disc models to succeed. The thesis contains many examples of the use of LIDT-DD that are not yet published but the case of the collision between two asteroid-like bodies is studied in detail. In particular, LIDT-DD is able to predict the different stages that should be observed after such massive collisions that happen mainly in the latest stages of planetary formation. Some giant impact signatures and observability predictions for VLT/SPHERE and JWST/MIRI are given. JWST should be able to detect many of such impacts and would enable to see on-going planetary formation in dozens of planetary systems.

Design of experiments applications in bioprocessing: concepts and approach.

PubMed

Kumar, Vijesh; Bhalla, Akriti; Rathore, Anurag S

2014-01-01

Most biotechnology unit operations are complex in nature with numerous process variables, feed material attributes, and raw material attributes that can have significant impact on the performance of the process. Design of experiments (DOE)-based approach offers a solution to this conundrum and allows for an efficient estimation of the main effects and the interactions with minimal number of experiments. Numerous publications illustrate application of DOE towards development of different bioprocessing unit operations. However, a systematic approach for evaluation of the different DOE designs and for choosing the optimal design for a given application has not been published yet. Through this work we have compared the I-optimal and D-optimal designs to the commonly used central composite and Box-Behnken designs for bioprocess applications. A systematic methodology is proposed for construction of the model and for precise prediction of the responses for the three case studies involving some of the commonly used unit operations in downstream processing. Use of Akaike information criterion for model selection has been examined and found to be suitable for the applications under consideration. © 2013 American Institute of Chemical Engineers.

Modeling of plant in vitro cultures: overview and estimation of biotechnological processes.

PubMed

Maschke, Rüdiger W; Geipel, Katja; Bley, Thomas

2015-01-01

Plant cell and tissue cultivations are of growing interest for the production of structurally complex and expensive plant-derived products, especially in pharmaceutical production. Problems with up-scaling, low yields, and high-priced process conditions result in an increased demand for models to provide comprehension, simulation, and optimization of production processes. In the last 25 years, many models have evolved in plant biotechnology; the majority of them are specialized models for a few selected products or nutritional conditions. In this article we review, delineate, and discuss the concepts and characteristics of the most commonly used models. Therefore, the authors focus on models for plant suspension and submerged hairy root cultures. The article includes a short overview of modeling and mathematics and integrated parameters, as well as the application scope for each model. The review is meant to help researchers better understand and utilize the numerous models published for plant cultures, and to select the most suitable model for their purposes. © 2014 Wiley Periodicals, Inc.

Robust adaptive relative position and attitude control for spacecraft autonomous proximity.

PubMed

Sun, Liang; Huo, Wei; Jiao, Zongxia

2016-07-01

This paper provides new results of the dynamical modeling and controller designing for autonomous close proximity phase during rendezvous and docking in the presence of kinematic couplings and model uncertainties. A globally defined relative motion mechanical model for close proximity operations is introduced firstly. Then, in spite of the kinematic couplings and thrust misalignment between relative rotation and relative translation, robust adaptive relative position and relative attitude controllers are designed successively. Finally, stability of the overall system is proved that the relative position and relative attitude are uniformly ultimately bounded, and the size of the ultimate bound can be regulated small enough by control system parameters. Performance of the controlled overall system is demonstrated via a representative numerical example. Copyright © 2016 ISA. Published by Elsevier Ltd. All rights reserved.

Effect of turbulent eddy viscosity on the unstable surface mode above an acoustic liner

NASA Astrophysics Data System (ADS)

Marx, David; Aurégan, Yves

2013-07-01

Lined ducts are used to reduce noise radiation from ducts in turbofan engines. In certain conditions they may sustain hydrodynamic instabilities. A local linear stability analysis of the flow in a 2D lined channel is performed using a numerical integration of the governing equations. Several model equations are used, one of them taking into account turbulent eddy viscosity, and a realistic turbulent mean flow profile is used that vanishes at the wall. The stability analysis results are compared to published experimental results. Both the model and the experiments show the existence of an unstable mode, and the importance of taking into account eddy viscosity in the model is shown. When this is done, quantities such as the growth rate and the velocity eigenfunctions are shown to agree correctly.

Generalized Effective Medium Theory for Particulate Nanocomposite Materials

PubMed Central

Siddiqui, Muhammad Usama; Arif, Abul Fazal M.

2016-01-01

The thermal conductivity of particulate nanocomposites is strongly dependent on the size, shape, orientation and dispersion uniformity of the inclusions. To correctly estimate the effective thermal conductivity of the nanocomposite, all these factors should be included in the prediction model. In this paper, the formulation of a generalized effective medium theory for the determination of the effective thermal conductivity of particulate nanocomposites with multiple inclusions is presented. The formulated methodology takes into account all the factors mentioned above and can be used to model nanocomposites with multiple inclusions that are randomly oriented or aligned in a particular direction. The effect of inclusion dispersion non-uniformity is modeled using a two-scale approach. The applications of the formulated effective medium theory are demonstrated using previously published experimental and numerical results for several particulate nanocomposites. PMID:28773817

Modeling of milk flow in mammary ducts in lactating human female breast.

PubMed

Mortazavi, S Negin; Geddes, Donna; Hassanipour, Fatemeh

2014-01-01

A transient laminar Newtonian three-dimensional CFD simulation has been studied for milk flow in a phantom model of the 6-generations human lactating breast branching system. Milk is extracted by the cyclic pattern of suction from the alveoli through the duct and to the nipple. The real negative (suction) pressure data are applied as an outlet boundary condition in nipple. In this study, the commercial CFD code (Fluent Inc., 2004) is employed for the numerical solution of the milk flow. The milk intake flow rate from simulation is compared to the real clinical data from published paper. The results are in good agreement. It is believed that the methodology of the lactating human breast branching modeling proposed here can provide potential guidelines for further clinical and research application.

Analytical modeling of drug dynamics induced by eluting stents in the coronary multi-layered curved domain.

PubMed

d'Errico, Michele; Sammarco, Paolo; Vairo, Giuseppe

2015-09-01

Pharmacokinetics induced by drug eluting stents (DES) in coronary walls is modeled by means of a one-dimensional multi-layered model, accounting for vessel curvature and non-homogeneous properties of the arterial tissues. The model includes diffusion mechanisms, advection effects related to plasma filtration through the walls, and bio-chemical drug reactions. A non-classical Sturm-Liouville problem with discontinuous coefficients is derived, whose closed-form analytical solution is obtained via an eigenfunction expansion. Soundness and consistency of the proposed approach are shown by numerical computations based on possible clinical treatments involving both hydrophilic and hydrophobic drugs. The influence of the main model parameters on drug delivery mechanisms is analyzed, highlighting the effects induced by vessel curvature and yielding comparative indications and useful insights into the concurring mechanisms governing the pharmacokinetics. Copyright © 2015. Published by Elsevier Inc.

Constrained off-line synthesis approach of model predictive control for networked control systems with network-induced delays.

PubMed

Tang, Xiaoming; Qu, Hongchun; Wang, Ping; Zhao, Meng

2015-03-01

This paper investigates the off-line synthesis approach of model predictive control (MPC) for a class of networked control systems (NCSs) with network-induced delays. A new augmented model which can be readily applied to time-varying control law, is proposed to describe the NCS where bounded deterministic network-induced delays may occur in both sensor to controller (S-A) and controller to actuator (C-A) links. Based on this augmented model, a sufficient condition of the closed-loop stability is derived by applying the Lyapunov method. The off-line synthesis approach of model predictive control is addressed using the stability results of the system, which explicitly considers the satisfaction of input and state constraints. Numerical example is given to illustrate the effectiveness of the proposed method. Copyright © 2014 ISA. Published by Elsevier Ltd. All rights reserved.

Silkworm: A Promising Model Organism in Life Science.

PubMed

Meng, Xu; Zhu, Feifei; Chen, Keping

2017-09-01

As an important economic insect, silkworm Bombyx mori (L.) (Lepidoptera: Bombycidae) has numerous advantages in life science, such as low breeding cost, large progeny size, short generation time, and clear genetic background. Additionally, there are rich genetic resources associated with silkworms. The completion of the silkworm genome has further accelerated it to be a modern model organism in life science. Genomic studies showed that some silkworm genes are highly homologous to certain genes related to human hereditary disease and, therefore, are a candidate model for studying human disease. In this article, we provided a review of silkworm as an important model in various research areas, including human disease, screening of antimicrobial agents, environmental safety monitoring, and antitumor studies. In addition, the application potentiality of silkworm model in life sciences was discussed. © The Author 2017. Published by Oxford University Press on behalf of Entomological Society of America.

Magnetic biosensors: Modelling and simulation.

PubMed

Nabaei, Vahid; Chandrawati, Rona; Heidari, Hadi

2018-04-30

In the past few years, magnetoelectronics has emerged as a promising new platform technology in various biosensors for detection, identification, localisation and manipulation of a wide spectrum of biological, physical and chemical agents. The methods are based on the exposure of the magnetic field of a magnetically labelled biomolecule interacting with a complementary biomolecule bound to a magnetic field sensor. This Review presents various schemes of magnetic biosensor techniques from both simulation and modelling as well as analytical and numerical analysis points of view, and the performance variations under magnetic fields at steady and nonstationary states. This is followed by magnetic sensors modelling and simulations using advanced Multiphysics modelling software (e.g. Finite Element Method (FEM) etc.) and home-made developed tools. Furthermore, outlook and future directions of modelling and simulations of magnetic biosensors in different technologies and materials are critically discussed. Crown Copyright © 2017. Published by Elsevier B.V. All rights reserved.

CALL FOR PAPERS: Special Issue on `Geometric Numerical Integration of Differential Equations'

NASA Astrophysics Data System (ADS)

Quispel, G. R. W.; McLachlan, R. I.

2005-02-01

This is a call for contributions to a special issue of Journal of Physics A: Mathematical and General entitled `Geometric Numerical Integration of Differential Equations'. This issue should be a repository for high quality original work. We are interested in having the topic interpreted broadly, that is, to include contributions dealing with symplectic or multisymplectic integration; volume-preserving integration; symmetry-preserving integration; integrators that preserve first integrals, Lyapunov functions, or dissipation; exponential integrators; integrators for highly oscillatory systems; Lie-group integrators, etc. Papers on geometric integration of both ODEs and PDEs will be considered, as well as application to molecular-scale integration, celestial mechanics, particle accelerators, fluid flows, population models, epidemiological models and/or any other areas of science. We believe that this issue is timely, and hope that it will stimulate further development of this new and exciting field. The Editorial Board has invited G R W Quispel and R I McLachlan to serve as Guest Editors for the special issue. Their criteria for acceptance of contributions are the following: • The subject of the paper should relate to geometric numerical integration in the sense described above. • Contributions will be refereed and processed according to the usual procedure of the journal. • Papers should be original; reviews of a work published elsewhere will not be accepted. The guidelines for the preparation of contributions are as follows: • The DEADLINE for submission of contributions is 1 September 2005. This deadline will allow the special issue to appear in late 2005 or early 2006. • There is a strict page limit of 16 printed pages (approximately 9600 words) per contribution. For papers exceeding this limit, the Guest Editors reserve the right to request a reduction in length. Further advice on publishing your work in Journal of Physics A: Mathematical and General may be found at www.iop.org/Journals/jphysa. • Contributions to the special issue should if possible be submitted electronically by web upload at {www.iop.org/Journals/jphysa or by e-mail to jphysa@iop.org, quoting `JPhysA Special Issue—Geometric Integration'. Submissions should ideally be in standard LaTeX form; we are, however, able to accept most formats including Microsoft Word. Please see the web site for further information on electronic submissions. • Authors unable to submit electronically may send hard copy contributions to: Publishing Administrators, Journal of Physics A, Institute of Physics Publishing, Dirac House, Temple Back, Bristol BS1 6BE, UK, enclosing the electronic code on floppy disk if available and quoting `JPhysA Special Issue—Geometric Integration'. • All contributions should be accompanied by a read-me file or covering letter giving the postal and e-mail addresses for correspondence. The Publishing Office should be notified of any subsequent change of address. This special issue will be published in the paper and online version of the journal. The corresponding author of each contribution will receive a complimentary copy of the issue. G R W Quispel and R I McLachlan Guest Editors

Numerical Modelling of Rayleigh Wave Propagation in Course of Rapid Impulse Compaction

NASA Astrophysics Data System (ADS)

Herbut, Aneta; Rybak, Jarosław

2017-10-01

As the soil improvement technologies are the area of a rapid development, they require designing and implementing novel methods of control and calibration in order to ensure the safety of geotechnical works. At Wroclaw University of Science and Technology (Poland), these new methods are continually developed with the aim to provide the appropriate tools for the preliminary design of work process, as well as for the further ongoing on-site control of geotechnical works (steel sheet piling, pile driving or soil improvement technologies). The studies include preliminary numerical simulations and field tests concerning measurements and continuous histogram recording of shocks and vibrations and its ground-born dynamic impact on engineering structures. The impact of vibrations on reinforced concrete and masonry structures in the close proximity of the construction site may be destroying in both architectural and structural meaning. Those limits are juxtaposed in codes of practice, but always need an individual judgment. The results and observations make it possible to delineate specific modifications to the parameters of technology applied (e.g. hammer drop height). On the basis of numerous case studies of practical applications, already summarized and published, we were able to formulate the guidelines for work on the aforementioned sites. This work presents specific aspects of the active design (calibration of building site numerical model) by means of technology calibration, using the investigation of the impact of vibrations that occur during the Impulse Compaction on adjacent structures. A case study entails the impact of construction works on Rayleigh wave propagation in the zone of 100 m (radius) around the Compactor.

Observational and numerical studies of extreme frontal scale contraction

NASA Technical Reports Server (NTRS)

Koch, Steven E.

1995-01-01

The general objective of this effort is to increase understanding of how frontal scale contraction processes may create and sustain intense mesoscale precipitation along intensifying cold fronts. The five-part project (an expansion of the originally proposed two-part project) employed conventional meteorological data, special mesoscale data, remote sensing measurements, and various numerical models. First an idealized hydrostatic modeling study of the scale contraction effects of differential cloud cover on low-level frontal structure and dynamics was completed and published in a peer-reviewed journal. The second objective was to complete and publish the results from a three dimensional numerical model simulation of a cold front in which differential sensible heating related to cloud coverage patterns was apparently crucial in the formation of a severe frontal squall line. The third objective was to use a nonhydrostatic model to examine the nonlinear interactions between the transverse circulation arising from inhomogeneous cloud cover, the adiabatic frontal circulation related to semi-geostrophic forcing, and diabatic effects related to precipitation processes, in the development of a density current-like microstructure at the leading edge of cold fronts. Although the development of a frontal model that could be used to initialize such a primitive equation model was begun, we decided to focus our efforts instead on a project that could be successfully completed in this short time, due to the lack of prospects for continued NASA funding beyond this first year (our proposal was not accepted for future funding). Thus, a fourth task was added, which was to use the nonhydrostatic model to test tentative hypotheses developed from the most detailed observations ever obtained on a density current (primarily sodar and wind profiler data). These simulations were successfully completed, the findings were reported at a scientific conference, and the results have recently been submitted to a peer-reviewed journal. The fifth objective was to complete the analysis of data collected during the Cooperative Oklahoma Profiler Studies (COPS-91) field project, which was supported by NASA. The analysis of the mesoscale surface and sounding data, Doppler radar imagery, and other remote sensing data from multi frequency wind profiler, microwave radiometer, and the Radio Acoustic Sounding System has been completed. This study is a unique investigation of processes that caused the contraction of a cold front to a microscale zone exhibiting an undular bore-like structure. Results were reported at a scientific conference and are being prepared for publication. In summary, considerable progress has been achieved under NASA funding in furthering our understanding of frontal scale contraction and density current - gravity wave interaction processes, and in utilizing models and remotely sensed data in such studies.

Predicting Earth orientation changes from global forecasts of atmosphere-hydrosphere dynamics

NASA Astrophysics Data System (ADS)

Dobslaw, Henryk; Dill, Robert

2018-02-01

Effective Angular Momentum (EAM) functions obtained from global numerical simulations of atmosphere, ocean, and land surface dynamics are routinely processed by the Earth System Modelling group at Deutsches GeoForschungsZentrum. EAM functions are available since January 1976 with up to 3 h temporal resolution. Additionally, 6 days-long EAM forecasts are routinely published every day. Based on hindcast experiments with 305 individual predictions distributed over 15 months, we demonstrate that EAM forecasts improve the prediction accuracy of the Earth Orientation Parameters at all forecast horizons between 1 and 6 days. At day 6, prediction accuracy improves down to 1.76 mas for the terrestrial pole offset, and 2.6 mas for Δ UT1, which correspond to an accuracy increase of about 41% over predictions published in Bulletin A by the International Earth Rotation and Reference System Service.

Comparative Study on the Prediction of Aerodynamic Characteristics of Aircraft with Turbulence Models

NASA Astrophysics Data System (ADS)

Jang, Yujin; Huh, Jinbum; Lee, Namhun; Lee, Seungsoo; Park, Youngmin

2018-04-01

The RANS equations are widely used to analyze complex flows over aircraft. The equations require a turbulence model for turbulent flow analyses. A suitable turbulence must be selected for accurate predictions of aircraft aerodynamic characteristics. In this study, numerical analyses of three-dimensional aircraft are performed to compare the results of various turbulence models for the prediction of aircraft aerodynamic characteristics. A 3-D RANS solver, MSAPv, is used for the aerodynamic analysis. The four turbulence models compared are the Sparlart-Allmaras (SA) model, Coakley's q-ω model, Huang and Coakley's k-ɛ model, and Menter's k-ω SST model. Four aircrafts are considered: an ARA-M100, DLR-F6 wing-body, DLR-F6 wing-body-nacelle-pylon from the second drag prediction workshop, and a high wing aircraft with nacelles. The CFD results are compared with experimental data and other published computational results. The details of separation patterns, shock positions, and Cp distributions are discussed to find the characteristics of the turbulence models.

Surgical clothing systems in laminar airflow operating room: a numerical assessment.

PubMed

Sadrizadeh, Sasan; Holmberg, Sture

2014-01-01

This study compared two different laminar airflow distribution strategies - horizontal and vertical - and investigated the effectiveness of both ventilation systems in terms of reducing the sedimentation and distribution of bacteria-carrying particles. Three different staff clothing systems, which resulted in source strengths of 1.5, 4 and 5 CFU/s per person, were considered. The exploration was conducted numerically using a computational fluid dynamics technique. Active and passive air sampling methods were simulated in addition to recovery tests, and the results were compared. Model validation was performed through comparisons with measurement data from the published literature. The recovery test yielded a value of 8.1 min for the horizontal ventilation scenario and 11.9 min for the vertical ventilation system. Fewer particles were captured by the slit sampler and in sedimentation areas with the horizontal ventilation system. The simulated results revealed that under identical conditions in the examined operating room, the horizontal laminar ventilation system performed better than the vertical option. The internal constellation of lamps, the surgical team and objects could have a serious effect on the movement of infectious particles and therefore on postoperative surgical site infections. Copyright © 2014 King Saud Bin Abdulaziz University for Health Sciences. Published by Elsevier Ltd. All rights reserved.

Developmental Changes in the Profiles of Dyscalculia: An Explanation Based on a Double Exact-and-Approximate Number Representation Model

PubMed Central

Noël, Marie-Pascale; Rousselle, Laurence

2011-01-01

Studies on developmental dyscalculia (DD) have tried to identify a basic numerical deficit that could account for this specific learning disability. The first proposition was that the number magnitude representation of these children was impaired. However, Rousselle and Noël (2007) brought data showing that this was not the case but rather that these children were impaired when processing the magnitude of symbolic numbers only. Since then, incongruent results have been published. In this paper, we will propose a developmental perspective on this issue. We will argue that the first deficit shown in DD regards the building of an exact representation of numerical value, thanks to the learning of symbolic numbers, and that the reduced acuity of the approximate number magnitude system appears only later and is secondary to the first deficit. PMID:22203797

Developmental Changes in the Profiles of Dyscalculia: An Explanation Based on a Double Exact-and-Approximate Number Representation Model.

PubMed

Noël, Marie-Pascale; Rousselle, Laurence

2011-01-01

Studies on developmental dyscalculia (DD) have tried to identify a basic numerical deficit that could account for this specific learning disability. The first proposition was that the number magnitude representation of these children was impaired. However, Rousselle and Noël (2007) brought data showing that this was not the case but rather that these children were impaired when processing the magnitude of symbolic numbers only. Since then, incongruent results have been published. In this paper, we will propose a developmental perspective on this issue. We will argue that the first deficit shown in DD regards the building of an exact representation of numerical value, thanks to the learning of symbolic numbers, and that the reduced acuity of the approximate number magnitude system appears only later and is secondary to the first deficit.

Heat generation/absorption and nonlinear radiation effects on stagnation point flow of nanofluid along a moving surface

NASA Astrophysics Data System (ADS)

Soomro, Feroz Ahmed; Haq, Rizwan Ul; Al-Mdallal, Qasem M.; Zhang, Qiang

2018-03-01

In this study, heat generation/absorption effects are studied in the presence of nonlinear thermal radiation along a moving slip surface. Uniform magnetic field and convective condition along the stretching surface are adjusted to deal the slip mechanisms in term of Brownian motion and thermophoresis for nanofluid. The mathematical model is constructed in the form of coupled partial differential equations. By introducing the suitable similarity transformation, system of coupled nonlinear ordinary differential equations are obtained. Finite difference approach is implemented to obtain the unknown functions of velocity, temperature, nanoparticle concentration. To deduct the effects at the surface, physical quantities of interest are computed under the effects of controlled physical parameters. Present numerical solutions are validated via numerical comparison with existing published work for limiting cases. Present study indicates that due to increase in both Brownian motion and thermophoresis, the Nusselt number decreases while Sherwood number shows the gradual increase.

Statistical Models for the Analysis of Zero-Inflated Pain Intensity Numeric Rating Scale Data.

PubMed

Goulet, Joseph L; Buta, Eugenia; Bathulapalli, Harini; Gueorguieva, Ralitza; Brandt, Cynthia A

2017-03-01

Pain intensity is often measured in clinical and research settings using the 0 to 10 numeric rating scale (NRS). NRS scores are recorded as discrete values, and in some samples they may display a high proportion of zeroes and a right-skewed distribution. Despite this, statistical methods for normally distributed data are frequently used in the analysis of NRS data. We present results from an observational cross-sectional study examining the association of NRS scores with patient characteristics using data collected from a large cohort of 18,935 veterans in Department of Veterans Affairs care diagnosed with a potentially painful musculoskeletal disorder. The mean (variance) NRS pain was 3.0 (7.5), and 34% of patients reported no pain (NRS = 0). We compared the following statistical models for analyzing NRS scores: linear regression, generalized linear models (Poisson and negative binomial), zero-inflated and hurdle models for data with an excess of zeroes, and a cumulative logit model for ordinal data. We examined model fit, interpretability of results, and whether conclusions about the predictor effects changed across models. In this study, models that accommodate zero inflation provided a better fit than the other models. These models should be considered for the analysis of NRS data with a large proportion of zeroes. We examined and analyzed pain data from a large cohort of veterans with musculoskeletal disorders. We found that many reported no current pain on the NRS on the diagnosis date. We present several alternative statistical methods for the analysis of pain intensity data with a large proportion of zeroes. Published by Elsevier Inc.

Nonlinear coupled mode approach for modeling counterpropagating solitons in the presence of disorder-induced multiple scattering in photonic crystal waveguides

NASA Astrophysics Data System (ADS)

Mann, Nishan; Hughes, Stephen

2018-02-01

We present the analytical and numerical details behind our recently published article [Phys. Rev. Lett. 118, 253901 (2017), 10.1103/PhysRevLett.118.253901], describing the impact of disorder-induced multiple scattering on counterpropagating solitons in photonic crystal waveguides. Unlike current nonlinear approaches using the coupled mode formalism, we account for the effects of intraunit cell multiple scattering. To solve the resulting system of coupled semilinear partial differential equations, we introduce a modified Crank-Nicolson-type norm-preserving implicit finite difference scheme inspired by the transfer matrix method. We provide estimates of the numerical dispersion characteristics of our scheme so that optimal step sizes can be chosen to either minimize numerical dispersion or to mimic the exact dispersion. We then show numerical results of a fundamental soliton propagating in the presence of multiple scattering to demonstrate that choosing a subunit cell spatial step size is critical in accurately capturing the effects of multiple scattering, and illustrate the stochastic nature of disorder by simulating soliton propagation in various instances of disordered photonic crystal waveguides. Our approach is easily extended to include a wide range of optical nonlinearities and is applicable to various photonic nanostructures where power propagation is bidirectional, either by choice, or as a result of multiple scattering.

Validity of urinary monoamine assay sales under the “spot baseline urinary neurotransmitter testing marketing model”

PubMed Central

Hinz, Marty; Stein, Alvin; Uncini, Thomas

2011-01-01

Spot baseline urinary monoamine assays have been used in medicine for over 50 years as a screening test for monoamine-secreting tumors, such as pheochromocytoma and carcinoid syndrome. In these disease states, when the result of a spot baseline monoamine assay is above the specific value set by the laboratory, it is an indication to obtain a 24-hour urine sample to make a definitive diagnosis. There are no defined applications where spot baseline urinary monoamine assays can be used to diagnose disease or other states directly. No peer-reviewed published original research exists which demonstrates that these assays are valid in the treatment of individual patients in the clinical setting. Since 2001, urinary monoamine assay sales have been promoted for numerous applications under the “spot baseline urinary neurotransmitter testing marketing model”. There is no published peer-reviewed original research that defines the scientific foundation upon which the claims for these assays are made. On the contrary, several articles have been published that discredit various aspects of the model. To fill the void, this manuscript is a comprehensive review of the scientific foundation and claims put forth by laboratories selling urinary monoamine assays under the spot baseline urinary neurotransmitter testing marketing model. PMID:21912487

Monte Carlo uncertainty analysis of dose estimates in radiochromic film dosimetry with single-channel and multichannel algorithms.

PubMed

Vera-Sánchez, Juan Antonio; Ruiz-Morales, Carmen; González-López, Antonio

2018-03-01

To provide a multi-stage model to calculate uncertainty in radiochromic film dosimetry with Monte-Carlo techniques. This new approach is applied to single-channel and multichannel algorithms. Two lots of Gafchromic EBT3 are exposed in two different Varian linacs. They are read with an EPSON V800 flatbed scanner. The Monte-Carlo techniques in uncertainty analysis provide a numerical representation of the probability density functions of the output magnitudes. From this numerical representation, traditional parameters of uncertainty analysis as the standard deviations and bias are calculated. Moreover, these numerical representations are used to investigate the shape of the probability density functions of the output magnitudes. Also, another calibration film is read in four EPSON scanners (two V800 and two 10000XL) and the uncertainty analysis is carried out with the four images. The dose estimates of single-channel and multichannel algorithms show a Gaussian behavior and low bias. The multichannel algorithms lead to less uncertainty in the final dose estimates when the EPSON V800 is employed as reading device. In the case of the EPSON 10000XL, the single-channel algorithms provide less uncertainty in the dose estimates for doses higher than four Gy. A multi-stage model has been presented. With the aid of this model and the use of the Monte-Carlo techniques, the uncertainty of dose estimates for single-channel and multichannel algorithms are estimated. The application of the model together with Monte-Carlo techniques leads to a complete characterization of the uncertainties in radiochromic film dosimetry. Copyright © 2018 Associazione Italiana di Fisica Medica. Published by Elsevier Ltd. All rights reserved.

Concordance measure and discriminatory accuracy in transformation cure models.

PubMed

Zhang, Yilong; Shao, Yongzhao

2018-01-01

Many populations of early-stage cancer patients have non-negligible latent cure fractions that can be modeled using transformation cure models. However, there is a lack of statistical metrics to evaluate prognostic utility of biomarkers in this context due to the challenges associated with unknown cure status and heavy censorship. In this article, we develop general concordance measures as evaluation metrics for the discriminatory accuracy of transformation cure models including the so-called promotion time cure models and mixture cure models. We introduce explicit formulas for the consistent estimates of the concordance measures, and show that their asymptotically normal distributions do not depend on the unknown censoring distribution. The estimates work for both parametric and semiparametric transformation models as well as transformation cure models. Numerical feasibility of the estimates and their robustness to the censoring distributions are illustrated via simulation studies and demonstrated using a melanoma data set. © The Author 2017. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Tetrahedral node for Transmission-Line Modeling (TLM) applied to Bio-heat Transfer.

PubMed

Milan, Hugo F M; Gebremedhin, Kifle G

2016-12-01

Transmission-Line Modeling (TLM) is a numerical method used to solve complex and time-domain bio-heat transfer problems. In TLM, parallelepipeds are used to discretize three-dimensional problems. The drawback in using parallelepiped shapes is that instead of refining only the domain of interest, a large additional domain would also have to be refined, which results in increased computational time and memory space. In this paper, we developed a tetrahedral node for TLM applied to bio-heat transfer that does not have the drawback associated with the parallelepiped node. The model includes heat source, blood perfusion, boundary conditions and initial conditions. The boundary conditions could be adiabatic, temperature, heat flux, or convection. The predicted temperature and heat flux were compared against results from an analytical solution and the results agreed within 2% for a mesh size of 69,941 nodes and a time step of 5ms. The method was further validated against published results of maximum skin-surface temperature difference in a breast with and without tumor and the results agreed within 6%. The published results were obtained from a model that used parallelepiped TLM node. An open source software, TLMBHT, was written using the theory developed herein and is available for download free-of-charge. Copyright © 2016 Elsevier Ltd. All rights reserved.

Real longitudinal data analysis for real people: building a good enough mixed model.

PubMed

Cheng, Jing; Edwards, Lloyd J; Maldonado-Molina, Mildred M; Komro, Kelli A; Muller, Keith E

2010-02-20

Mixed effects models have become very popular, especially for the analysis of longitudinal data. One challenge is how to build a good enough mixed effects model. In this paper, we suggest a systematic strategy for addressing this challenge and introduce easily implemented practical advice to build mixed effects models. A general discussion of the scientific strategies motivates the recommended five-step procedure for model fitting. The need to model both the mean structure (the fixed effects) and the covariance structure (the random effects and residual error) creates the fundamental flexibility and complexity. Some very practical recommendations help to conquer the complexity. Centering, scaling, and full-rank coding of all the predictor variables radically improve the chances of convergence, computing speed, and numerical accuracy. Applying computational and assumption diagnostics from univariate linear models to mixed model data greatly helps to detect and solve the related computational problems. Applying computational and assumption diagnostics from the univariate linear models to the mixed model data can radically improve the chances of convergence, computing speed, and numerical accuracy. The approach helps to fit more general covariance models, a crucial step in selecting a credible covariance model needed for defensible inference. A detailed demonstration of the recommended strategy is based on data from a published study of a randomized trial of a multicomponent intervention to prevent young adolescents' alcohol use. The discussion highlights a need for additional covariance and inference tools for mixed models. The discussion also highlights the need for improving how scientists and statisticians teach and review the process of finding a good enough mixed model. (c) 2009 John Wiley & Sons, Ltd.

Assessing Scientific Performance.

ERIC Educational Resources Information Center

Weiner, John M.; And Others

1984-01-01

A method for assessing scientific performance based on relationships displayed numerically in published documents is proposed and illustrated using published documents in pediatric oncology for the period 1979-1982. Contributions of a major clinical investigations group, the Childrens Cancer Study Group, are analyzed. Twenty-nine references are…

The Morphological Characteristics and Mechanical Formation of Giant Radial Dike Swarms on Venus: An Overview Emphasizing Recent Numerical Modeling Insights

NASA Astrophysics Data System (ADS)

McGovern, P. J., Jr.; Grosfils, E. B.; Le Corvec, N.; Ernst, R. E.; Galgana, G. A.

2017-12-01

Over 200 giant radial dike swarms have been identified on Venus using Magellan data, yielding insight into morphological characteristics long since erased by erosion and other processes on Earth. Since such radial dike systems are typically associated with magma reservoirs, large volcanoes and/or larger-scale plume activity—and because dike geometry reflects stress conditions at the time of intrusion—assessing giant radial dike formation in the context of swarm morphology can place important constraints upon this fundamental volcanotectonic process. Recent numerical models reveal that, contrary to what is reported in much of the published literature, it is not easy, mechanically, to produce either large or small radial dike systems. After extensive numerical examination of reservoir inflation, however, under conditions ranging from a simple halfspace to complex flexural loading, we have thus far identified four scenarios that produce radial dike systems. Two of these scenarios yield dike systems akin to those often associated with shield and stratocone volcanoes on Earth, while the other two, our focus here, are more consistent with the giant radial dike system geometries catalogued on Venus. In this presentation we will (a) review key morphological characteristics of the giant radial systems identified on Venus, (b) briefly illustrate why it is not easy, mechanically, to produce a radial dike system, (c) present the two volcanological circumstances we have identified that do allow a giant radial dike system to form, and (d) discuss current model limitations and potentially fruitful directions for future research.

DOE Office of Scientific and Technical Information (OSTI.GOV)

M. A. Wasiolek

The purpose of this report is to document the biosphere model, the Environmental Radiation Model for Yucca Mountain, Nevada (ERMYN), which describes radionuclide transport processes in the biosphere and associated human exposure that may arise as the result of radionuclide release from the geologic repository at Yucca Mountain. The biosphere model is one of the process models that support the Yucca Mountain Project (YMP) Total System Performance Assessment (TSPA) for the license application (LA), the TSPA-LA. The ERMYN model provides the capability of performing human radiation dose assessments. This report documents the biosphere model, which includes: (1) Describing the referencemore » biosphere, human receptor, exposure scenarios, and primary radionuclides for each exposure scenario (Section 6.1); (2) Developing a biosphere conceptual model using site-specific features, events, and processes (FEPs), the reference biosphere, the human receptor, and assumptions (Section 6.2 and Section 6.3); (3) Building a mathematical model using the biosphere conceptual model and published biosphere models (Sections 6.4 and 6.5); (4) Summarizing input parameters for the mathematical model, including the uncertainty associated with input values (Section 6.6); (5) Identifying improvements in the ERMYN model compared with the model used in previous biosphere modeling (Section 6.7); (6) Constructing an ERMYN implementation tool (model) based on the biosphere mathematical model using GoldSim stochastic simulation software (Sections 6.8 and 6.9); (7) Verifying the ERMYN model by comparing output from the software with hand calculations to ensure that the GoldSim implementation is correct (Section 6.10); and (8) Validating the ERMYN model by corroborating it with published biosphere models; comparing conceptual models, mathematical models, and numerical results (Section 7).« less

Numerical human models for accident research and safety - potentials and limitations.

PubMed

Praxl, Norbert; Adamec, Jiri; Muggenthaler, Holger; von Merten, Katja

2008-01-01

The method of numerical simulation is frequently used in the area of automotive safety. Recently, numerical models of the human body have been developed for the numerical simulation of occupants. Different approaches in modelling the human body have been used: the finite-element and the multibody technique. Numerical human models representing the two modelling approaches are introduced and the potentials and limitations of these models are discussed.

Multivariate spatio-temporal modelling for assessing Antarctica's present-day contribution to sea-level rise

PubMed Central

Zammit-Mangion, Andrew; Rougier, Jonathan; Schön, Nana; Lindgren, Finn; Bamber, Jonathan

2015-01-01

Antarctica is the world's largest fresh-water reservoir, with the potential to raise sea levels by about 60 m. An ice sheet contributes to sea-level rise (SLR) when its rate of ice discharge and/or surface melting exceeds accumulation through snowfall. Constraining the contribution of the ice sheets to present-day SLR is vital both for coastal development and planning, and climate projections. Information on various ice sheet processes is available from several remote sensing data sets, as well as in situ data such as global positioning system data. These data have differing coverage, spatial support, temporal sampling and sensing characteristics, and thus, it is advantageous to combine them all in a single framework for estimation of the SLR contribution and the assessment of processes controlling mass exchange with the ocean. In this paper, we predict the rate of height change due to salient geophysical processes in Antarctica and use these to provide estimates of SLR contribution with associated uncertainties. We employ a multivariate spatio-temporal model, approximated as a Gaussian Markov random field, to take advantage of differing spatio-temporal properties of the processes to separate the causes of the observed change. The process parameters are estimated from geophysical models, while the remaining parameters are estimated using a Markov chain Monte Carlo scheme, designed to operate in a high-performance computing environment across multiple nodes. We validate our methods against a separate data set and compare the results to those from studies that invariably employ numerical model outputs directly. We conclude that it is possible, and insightful, to assess Antarctica's contribution without explicit use of numerical models. Further, the results obtained here can be used to test the geophysical numerical models for which in situ data are hard to obtain. © 2015 The Authors. Environmetrics published by John Wiley & Sons Ltd. PMID:25937792

Predicting floodplain boundary changes following the Cerro Grande wildfire

NASA Astrophysics Data System (ADS)

McLin, Stephen G.; Springer, Everett P.; Lane, Leonard J.

2001-10-01

A combined ArcView GIS-HEC modelling application for floodplain analysis of pre- and post-burned watersheds is described. The burned study area is located on Pajarito Plateau near Los Alamos National Laboratory (the Laboratory), where the Cerro Grande Wildfire burned 42 878 acres (17 352 ha) in May 2000. This area is dominated by rugged mountains that are dissected by numerous steep canyons having both ephemeral and perennial channel reaches. Vegetation consists of pinon-juniper woodlands located between 6000 and 7000 ft (1829-2134 m) above mean sea level (MSL), and Ponderosa pine stands between 7000 and 10000 ft MSL (2134-3048 m). Approximately 17% of the burned area is located within the Laboratory, and the remainder is located in upstream or adjacent watersheds. Pre-burn floodplains were previously mapped in 1990-91 using early HEC models as part of the hazardous waste site permitting process. Precipitation and stream gauge data provide essential information characterizing rainfall-runoff relationships before and after the fire. They also provide a means of monitoring spatial and temporal changes as forest recovery progresses. The 2000 summer monsoon began in late June and provided several significant runoff events for model calibration. HEC-HMS modelled responses were sequentially refined so that observed and predicted hydrograph peaks were matched at numerous channel locations. The 100 year, 6 h design storm was eventually used to predict peak hydrographs at critical sites. These results were compared with pre-fire simulations so that new flood-prone areas could be systematically identified. Stream channel cross-sectional geometries were extracted from a gridded 1 ft (0·3 m) digital elevation model (DEM) using ArcView GIS. Then floodpool topwidths, depths, and flow velocities were remapped using the HEC-RAS model. Finally, numerous surveyed channel sections were selectively made at crucial sites for DEM verification. These evaluations provided timely guidance that influenced the decision to construct several flood detention structures that were completed in September 2000. Published in 2001 John Wiley & Sons, Ltd.

How can we reduce phosphorus export from lowland polders? Implications from a sensitivity analysis of a coupled model.

PubMed

Huang, Jiacong; Gao, Junfeng; Yan, Renhua

2016-08-15

Phosphorus (P) export from lowland polders has caused severe water pollution. Numerical models are an important resource that help water managers control P export. This study coupled three models, i.e., Phosphorus Dynamic model for Polders (PDP), Integrated Catchments model of Phosphorus dynamics (INCA-P) and Universal Soil Loss Equation (USLE), to describe the P dynamics in polders. Based on the coupled models and a dataset collected from Polder Jian in China, sensitivity analysis were carried out to analyze the cause-effect relationships between environmental factors and P export from Polder Jian. The sensitivity analysis results showed that P export from Polder Jian were strongly affected by air temperature, precipitation and fertilization. Proper fertilization management should be a strategic priority for reducing P export from Polder Jian. This study demonstrated the success of model coupling, and its application in investigating potential strategies to support pollution control in polder systems. Copyright © 2016. Published by Elsevier B.V.

On the dynamics of a generalized predator-prey system with Z-type control.

PubMed

Lacitignola, Deborah; Diele, Fasma; Marangi, Carmela; Provenzale, Antonello

2016-10-01

We apply the Z-control approach to a generalized predator-prey system and consider the specific case of indirect control of the prey population. We derive the associated Z-controlled model and investigate its properties from the point of view of the dynamical systems theory. The key role of the design parameter λ for the successful application of the method is stressed and related to specific dynamical properties of the Z-controlled model. Critical values of the design parameter are also found, delimiting the λ-range for the effectiveness of the Z-method. Analytical results are then numerically validated by the means of two ecological models: the classical Lotka-Volterra model and a model related to a case study of the wolf-wild boar dynamics in the Alta Murgia National Park. Investigations on these models also highlight how the Z-control method acts in respect to different dynamical regimes of the uncontrolled model. Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.

Rate-equation modelling and ensemble approach to extraction of parameters for viral infection-induced cell apoptosis and necrosis

NASA Astrophysics Data System (ADS)

Domanskyi, Sergii; Schilling, Joshua E.; Gorshkov, Vyacheslav; Libert, Sergiy; Privman, Vladimir

2016-09-01

We develop a theoretical approach that uses physiochemical kinetics modelling to describe cell population dynamics upon progression of viral infection in cell culture, which results in cell apoptosis (programmed cell death) and necrosis (direct cell death). Several model parameters necessary for computer simulation were determined by reviewing and analyzing available published experimental data. By comparing experimental data to computer modelling results, we identify the parameters that are the most sensitive to the measured system properties and allow for the best data fitting. Our model allows extraction of parameters from experimental data and also has predictive power. Using the model we describe interesting time-dependent quantities that were not directly measured in the experiment and identify correlations among the fitted parameter values. Numerical simulation of viral infection progression is done by a rate-equation approach resulting in a system of "stiff" equations, which are solved by using a novel variant of the stochastic ensemble modelling approach. The latter was originally developed for coupled chemical reactions.

Rate-equation modelling and ensemble approach to extraction of parameters for viral infection-induced cell apoptosis and necrosis

NASA Astrophysics Data System (ADS)

Domanskyi, Sergii; Schilling, Joshua; Gorshkov, Vyacheslav; Libert, Sergiy; Privman, Vladimir

We develop a theoretical approach that uses physiochemical kinetics modelling to describe cell population dynamics upon progression of viral infection in cell culture, which results in cell apoptosis (programmed cell death) and necrosis (direct cell death). Several model parameters necessary for computer simulation were determined by reviewing and analyzing available published experimental data. By comparing experimental data to computer modelling results, we identify the parameters that are the most sensitive to the measured system properties and allow for the best data fitting. Our model allows extraction of parameters from experimental data and also has predictive power. Using the model we describe interesting time-dependent quantities that were not directly measured in the experiment and identify correlations among the fitted parameter values. Numerical simulation of viral infection progression is done by a rate-equation approach resulting in a system of ``stiff'' equations, which are solved by using a novel variant of the stochastic ensemble modelling approach. The latter was originally developed for coupled chemical reactions.

Linking internal and external bacterial community control gives mechanistic framework for pelagic virus‐to‐bacteria ratios

PubMed Central

Pree, Bernadette; Thingstad, T. Frede

2016-01-01

Summary For more than 25 years, virus‐to‐bacteria ratios (VBR) have been measured and interpreted as indicators of the importance of viruses in aquatic ecosystems, yet a generally accepted theory for understanding mechanisms controlling VBR is still lacking. Assuming that the denominator (total bacterial abundance) is primarily predator controlled, while viral lysis compensates for host growth rates exceeding this grazing loss, the numerator (viral abundance) reflects activity differences between prokaryotic hosts. VBR is then a ratio between mechanisms generating structure within the bacterial community and interactions between different plankton functional types controlling bacterial community size. We here show how these arguments can be formalized by combining a recently published model for co‐evolutionary host‐virus interactions, with a previously published “minimum” model for the microbial food web. The result is a framework where viral lysis links bacterial diversity to microbial food web structure and function, creating relationships between different levels of organization that are strongly modified by organism‐level properties such as cost of resistance. PMID:27231817

Nonlinear robust control of hypersonic aircrafts with interactions between flight dynamics and propulsion systems.

PubMed

Li, Zhaoying; Zhou, Wenjie; Liu, Hao

2016-09-01

This paper addresses the nonlinear robust tracking controller design problem for hypersonic vehicles. This problem is challenging due to strong coupling between the aerodynamics and the propulsion system, and the uncertainties involved in the vehicle dynamics including parametric uncertainties, unmodeled model uncertainties, and external disturbances. By utilizing the feedback linearization technique, a linear tracking error system is established with prescribed references. For the linear model, a robust controller is proposed based on the signal compensation theory to guarantee that the tracking error dynamics is robustly stable. Numerical simulation results are given to show the advantages of the proposed nonlinear robust control method, compared to the robust loop-shaping control approach. Copyright © 2016 ISA. Published by Elsevier Ltd. All rights reserved.

Automatic identification of bullet signatures based on consecutive matching striae (CMS) criteria.

PubMed

Chu, Wei; Thompson, Robert M; Song, John; Vorburger, Theodore V

2013-09-10

The consecutive matching striae (CMS) numeric criteria for firearm and toolmark identifications have been widely accepted by forensic examiners, although there have been questions concerning its observer subjectivity and limited statistical support. In this paper, based on signal processing and extraction, a model for the automatic and objective counting of CMS is proposed. The position and shape information of the striae on the bullet land is represented by a feature profile, which is used for determining the CMS number automatically. Rapid counting of CMS number provides a basis for ballistics correlations with large databases and further statistical and probability analysis. Experimental results in this report using bullets fired from ten consecutively manufactured barrels support this developed model. Published by Elsevier Ireland Ltd.

Numerical modeling and preliminary validation of drag-based vertical axis wind turbine

NASA Astrophysics Data System (ADS)

Krysiński, Tomasz; Buliński, Zbigniew; Nowak, Andrzej J.

2015-03-01

The main purpose of this article is to verify and validate the mathematical description of the airflow around a wind turbine with vertical axis of rotation, which could be considered as representative for this type of devices. Mathematical modeling of the airflow around wind turbines in particular those with the vertical axis is a problematic matter due to the complex nature of this highly swirled flow. Moreover, it is turbulent flow accompanied by a rotation of the rotor and the dynamic boundary layer separation. In such conditions, the key aspects of the mathematical model are accurate turbulence description, definition of circular motion as well as accompanying effects like centrifugal force or the Coriolis force and parameters of spatial and temporal discretization. The paper presents the impact of the different simulation parameters on the obtained results of the wind turbine simulation. Analysed models have been validated against experimental data published in the literature.

Virtual-optical information security system based on public key infrastructure

NASA Astrophysics Data System (ADS)

Peng, Xiang; Zhang, Peng; Cai, Lilong; Niu, Hanben

2005-01-01

A virtual-optical based encryption model with the aid of public key infrastructure (PKI) is presented in this paper. The proposed model employs a hybrid architecture in which our previously published encryption method based on virtual-optics scheme (VOS) can be used to encipher and decipher data while an asymmetric algorithm, for example RSA, is applied for enciphering and deciphering the session key(s). The whole information security model is run under the framework of international standard ITU-T X.509 PKI, which is on basis of public-key cryptography and digital signatures. This PKI-based VOS security approach has additional features like confidentiality, authentication, and integrity for the purpose of data encryption under the environment of network. Numerical experiments prove the effectiveness of the method. The security of proposed model is briefly analyzed by examining some possible attacks from the viewpoint of a cryptanalysis.

Model predictive control of non-linear systems over networks with data quantization and packet loss.

PubMed

Yu, Jimin; Nan, Liangsheng; Tang, Xiaoming; Wang, Ping

2015-11-01

This paper studies the approach of model predictive control (MPC) for the non-linear systems under networked environment where both data quantization and packet loss may occur. The non-linear controlled plant in the networked control system (NCS) is represented by a Tagaki-Sugeno (T-S) model. The sensed data and control signal are quantized in both links and described as sector bound uncertainties by applying sector bound approach. Then, the quantized data are transmitted in the communication networks and may suffer from the effect of packet losses, which are modeled as Bernoulli process. A fuzzy predictive controller which guarantees the stability of the closed-loop system is obtained by solving a set of linear matrix inequalities (LMIs). A numerical example is given to illustrate the effectiveness of the proposed method. Copyright © 2015 ISA. Published by Elsevier Ltd. All rights reserved.

Synthesis, Microstructure and Properties of Nickel Aluminide Foams

NASA Technical Reports Server (NTRS)

Dunand, David C.

2003-01-01

Two Ph.D. students were involved in the project: Mr. Christopher Schuh (part-time, graduated in Spring 2001) and Ms. Andrea Hodge (full-time, graduated Summer 2002). One post-doctoral fellow, Dr. Heeman Choe, worked full-time on the project from July to December 2002. A new process to aluminize and chromize nickel foams was created. A kinetic aluminization model was developed. Creep testing was conducted on the foams. A finite-element model and a simplified analytical model for foam creep were produced. Four articles were written: one is published, two are accepted for publication, and one is in preparation. Ms. Hodge spent four months at NASA Glenn Research Center (9-12/2001 and 2-3/2002) under the supervision of Dr. Nathal. She conducted research on NiAl foam fabrication, mechanical testing and numerical modeling. She gave a talk at the ASM annual conference in November 2001 and presented her results at NASA in December 2001.

Digital data sets that describe aquifer characteristics of the alluvial and terrace deposits along the Cimarron River from Freedom to Guthrie in northwestern Oklahoma

USGS Publications Warehouse

Adams, G.P.; Runkle, Donna; Rea, Alan; Cederstrand, J.R.

1997-01-01

ARC/INFO export and nonproprietary format files This diskette contains digitized aquifer boundaries, maps of hydraulic conductivity, recharge, and ground-water level elevation contours for the alluvial and terrace deposits along the Cimarron River from Freedom to Guthrie in northwestern Oklahoma. Ground water in 1,305 square miles of Quaternary-age alluvial and terrace deposits along the the Cimarron River from Freedom to Guthrie is an important source of water for irrigation, industrial, municipal, stock, and domestic supplies. Alluvial and terrace deposits are composed of interfingering lenses of clay, sandy clay, and cross-bedded poorly sorted sand and gravel. The aquifer is composed of hydraulically connected alluvial and terrace deposits that unconformably overlie the Permian-age Formations. The aquifer boundaries are from a ground-water modeling report on the alluvial and terrace aquifer along the Cimarron River from Freedom to Guthrie in northwestern Oklahoma and published digital surficial geology data sets. The aquifer boundary data set was created from digital geologic data sets from maps published at a scale of 1:250,000. The hydraulic conductivity values, recharge rates, and ground-water level elevation contours are from the ground-water modeling report. Water-level elevation contours were digitized from a map at a scale of 1:250,000. The maps were published at a scale of 1:900,000. Ground-water flow models are numerical representations that simplify and aggregate natural systems. Models are not unique; different combinations of aquifer characteristics may produce similar results. Therefore, values of hydraulic conductivity and recharge used in the model and presented in this data set are not precise, but are within a reasonable range when compared to independently collected data.

Sedimentary Geothermal Feasibility Study: October 2016

DOE Office of Scientific and Technical Information (OSTI.GOV)

Augustine, Chad; Zerpa, Luis

The objective of this project is to analyze the feasibility of commercial geothermal projects using numerical reservoir simulation, considering a sedimentary reservoir with low permeability that requires productivity enhancement. A commercial thermal reservoir simulator (STARS, from Computer Modeling Group, CMG) is used in this work for numerical modeling. In the first stage of this project (FY14), a hypothetical numerical reservoir model was developed, and validated against an analytical solution. The following model parameters were considered to obtain an acceptable match between the numerical and analytical solutions: grid block size, time step and reservoir areal dimensions; the latter related to boundarymore » effects on the numerical solution. Systematic model runs showed that insufficient grid sizing generates numerical dispersion that causes the numerical model to underestimate the thermal breakthrough time compared to the analytic model. As grid sizing is decreased, the model results converge on a solution. Likewise, insufficient reservoir model area introduces boundary effects in the numerical solution that cause the model results to differ from the analytical solution.« less

Reducing Modeling Error of Graphical Methods for Estimating Volume of Distribution Measurements in PIB-PET study

PubMed Central

Guo, Hongbin; Renaut, Rosemary A; Chen, Kewei; Reiman, Eric M

2010-01-01

Graphical analysis methods are widely used in positron emission tomography quantification because of their simplicity and model independence. But they may, particularly for reversible kinetics, lead to bias in the estimated parameters. The source of the bias is commonly attributed to noise in the data. Assuming a two-tissue compartmental model, we investigate the bias that originates from modeling error. This bias is an intrinsic property of the simplified linear models used for limited scan durations, and it is exaggerated by random noise and numerical quadrature error. Conditions are derived under which Logan's graphical method either over- or under-estimates the distribution volume in the noise-free case. The bias caused by modeling error is quantified analytically. The presented analysis shows that the bias of graphical methods is inversely proportional to the dissociation rate. Furthermore, visual examination of the linearity of the Logan plot is not sufficient for guaranteeing that equilibrium has been reached. A new model which retains the elegant properties of graphical analysis methods is presented, along with a numerical algorithm for its solution. We perform simulations with the fibrillar amyloid β radioligand [11C] benzothiazole-aniline using published data from the University of Pittsburgh and Rotterdam groups. The results show that the proposed method significantly reduces the bias due to modeling error. Moreover, the results for data acquired over a 70 minutes scan duration are at least as good as those obtained using existing methods for data acquired over a 90 minutes scan duration. PMID:20493196

A steady-state stomatal model of balanced leaf gas exchange, hydraulics and maximal source-sink flux.

PubMed

Hölttä, Teemu; Lintunen, Anna; Chan, Tommy; Mäkelä, Annikki; Nikinmaa, Eero

2017-07-01

Trees must simultaneously balance their CO2 uptake rate via stomata, photosynthesis, the transport rate of sugars and rate of sugar utilization in sinks while maintaining a favourable water and carbon balance. We demonstrate using a numerical model that it is possible to understand stomatal functioning from the viewpoint of maximizing the simultaneous photosynthetic production, phloem transport and sink sugar utilization rate under the limitation that the transpiration-driven hydrostatic pressure gradient sets for those processes. A key feature in our model is that non-stomatal limitations to photosynthesis increase with decreasing leaf water potential and/or increasing leaf sugar concentration and are thus coupled to stomatal conductance. Maximizing the photosynthetic production rate using a numerical steady-state model leads to stomatal behaviour that is able to reproduce the well-known trends of stomatal behaviour in response to, e.g., light, vapour concentration difference, ambient CO2 concentration, soil water status, sink strength and xylem and phloem hydraulic conductance. We show that our results for stomatal behaviour are very similar to the solutions given by the earlier models of stomatal conductance derived solely from gas exchange considerations. Our modelling results also demonstrate how the 'marginal cost of water' in the unified stomatal conductance model and the optimal stomatal model could be related to plant structural and physiological traits, most importantly, the soil-to-leaf hydraulic conductance and soil moisture. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Parametric electrical impedance tomography for measuring bone mineral density in the pelvis using a computational model.

PubMed

Kimel-Naor, Shani; Abboud, Shimon; Arad, Marina

2016-08-01

Osteoporosis is defined as bone microstructure deterioration resulting a decrease of bone's strength. Measured bone mineral density (BMD) constitutes the main tool for Osteoporosis diagnosis, management, and defines patient's fracture risk. In the present study, parametric electrical impedance tomography (pEIT) method was examined for monitoring BMD, using a computerized simulation model and preliminary real measurements. A numerical solver was developed to simulate surface potentials measured over a 3D computerized pelvis model. Varying cortical and cancellous BMD were simulated by changing bone conductivity and permittivity. Up to 35% and 16% change was found in the real and imaginary modules of the calculated potential, respectively, while BMD changes from 100% (normal) to 60% (Osteoporosis). Negligible BMD relative error was obtained with SNR>60 [dB]. Position changes errors indicate that for long term monitoring, measurement should be taken at the same geometrical configuration with great accuracy. The numerical simulations were compared to actual measurements that were acquired from a healthy male subject using a five electrodes belt bioimpedance device. The results suggest that pEIT may provide an inexpensive easy to use tool for frequent monitoring BMD in small clinics during pharmacological treatment, as a complementary method to DEXA test. Copyright © 2016. Published by Elsevier Ltd.

Implementing Subduction Models in the New Mantle Convection Code Aspect

NASA Astrophysics Data System (ADS)

Arredondo, Katrina; Billen, Magali

2014-05-01

The geodynamic community has utilized various numerical modeling codes as scientific questions arise and computer processing power increases. Citcom, a widely used mantle convection code, has limitations and vulnerabilities such as temperature overshoots of hundreds or thousands degrees Kelvin (i.e., Kommu et al., 2013). Recently Aspect intended as a more powerful cousin, is in active development with additions such as Adaptable Mesh Refinement (AMR) and improved solvers (Kronbichler et al., 2012). The validity and ease of use of Aspect is important to its survival and role as a possible upgrade and replacement to Citcom. Development of publishable models illustrates the capacity of Aspect. We present work on the addition of non-linear solvers and stress-dependent rheology to Aspect. With a solid foundational knowledge of C++, these additions were easily added into Aspect and tested against CitcomS. Time-dependent subduction models akin to those in Billen and Hirth (2007) are built and compared in CitcomS and Aspect. Comparison with CitcomS assists in Aspect development and showcases its flexibility, usability and capabilities. References: Billen, M. I., and G. Hirth, 2007. Rheologic controls on slab dynamics. Geochemistry, Geophysics, Geosystems. Kommu, R., E. Heien, L. H. Kellogg, W. Bangerth, T. Heister, E. Studley, 2013. The Overshoot Phenomenon in Geodynamics Codes. American Geophysical Union Fall Meeting. M. Kronbichler, T. Heister, W. Bangerth, 2012, High Accuracy Mantle Convection Simulation through Modern Numerical Methods, Geophys. J. Int.

Assessment of reduced-order unscented Kalman filter for parameter identification in 1-dimensional blood flow models using experimental data.

PubMed

Caiazzo, A; Caforio, Federica; Montecinos, Gino; Muller, Lucas O; Blanco, Pablo J; Toro, Eluterio F

2016-10-25

This work presents a detailed investigation of a parameter estimation approach on the basis of the reduced-order unscented Kalman filter (ROUKF) in the context of 1-dimensional blood flow models. In particular, the main aims of this study are (1) to investigate the effects of using real measurements versus synthetic data for the estimation procedure (i.e., numerical results of the same in silico model, perturbed with noise) and (2) to identify potential difficulties and limitations of the approach in clinically realistic applications to assess the applicability of the filter to such setups. For these purposes, the present numerical study is based on a recently published in vitro model of the arterial network, for which experimental flow and pressure measurements are available at few selected locations. To mimic clinically relevant situations, we focus on the estimation of terminal resistances and arterial wall parameters related to vessel mechanics (Young's modulus and wall thickness) using few experimental observations (at most a single pressure or flow measurement per vessel). In all cases, we first perform a theoretical identifiability analysis on the basis of the generalized sensitivity function, comparing then the results owith the ROUKF, using either synthetic or experimental data, to results obtained using reference parameters and to available measurements. Copyright © 2016 John Wiley & Sons, Ltd.

An asymptotic theory for cross-correlation between auto-correlated sequences and its application on neuroimaging data.

PubMed

Zhou, Yunyi; Tao, Chenyang; Lu, Wenlian; Feng, Jianfeng

2018-04-20

Functional connectivity is among the most important tools to study brain. The correlation coefficient, between time series of different brain areas, is the most popular method to quantify functional connectivity. Correlation coefficient in practical use assumes the data to be temporally independent. However, the time series data of brain can manifest significant temporal auto-correlation. A widely applicable method is proposed for correcting temporal auto-correlation. We considered two types of time series models: (1) auto-regressive-moving-average model, (2) nonlinear dynamical system model with noisy fluctuations, and derived their respective asymptotic distributions of correlation coefficient. These two types of models are most commonly used in neuroscience studies. We show the respective asymptotic distributions share a unified expression. We have verified the validity of our method, and shown our method exhibited sufficient statistical power for detecting true correlation on numerical experiments. Employing our method on real dataset yields more robust functional network and higher classification accuracy than conventional methods. Our method robustly controls the type I error while maintaining sufficient statistical power for detecting true correlation in numerical experiments, where existing methods measuring association (linear and nonlinear) fail. In this work, we proposed a widely applicable approach for correcting the effect of temporal auto-correlation on functional connectivity. Empirical results favor the use of our method in functional network analysis. Copyright © 2018. Published by Elsevier B.V.

Large-scale 3D geoelectromagnetic modeling using parallel adaptive high-order finite element method

DOE PAGES

Grayver, Alexander V.; Kolev, Tzanio V.

2015-11-01

Here, we have investigated the use of the adaptive high-order finite-element method (FEM) for geoelectromagnetic modeling. Because high-order FEM is challenging from the numerical and computational points of view, most published finite-element studies in geoelectromagnetics use the lowest order formulation. Solution of the resulting large system of linear equations poses the main practical challenge. We have developed a fully parallel and distributed robust and scalable linear solver based on the optimal block-diagonal and auxiliary space preconditioners. The solver was found to be efficient for high finite element orders, unstructured and nonconforming locally refined meshes, a wide range of frequencies, largemore » conductivity contrasts, and number of degrees of freedom (DoFs). Furthermore, the presented linear solver is in essence algebraic; i.e., it acts on the matrix-vector level and thus requires no information about the discretization, boundary conditions, or physical source used, making it readily efficient for a wide range of electromagnetic modeling problems. To get accurate solutions at reduced computational cost, we have also implemented goal-oriented adaptive mesh refinement. The numerical tests indicated that if highly accurate modeling results were required, the high-order FEM in combination with the goal-oriented local mesh refinement required less computational time and DoFs than the lowest order adaptive FEM.« less

Large-scale 3D geoelectromagnetic modeling using parallel adaptive high-order finite element method

DOE Office of Scientific and Technical Information (OSTI.GOV)

Grayver, Alexander V.; Kolev, Tzanio V.

Here, we have investigated the use of the adaptive high-order finite-element method (FEM) for geoelectromagnetic modeling. Because high-order FEM is challenging from the numerical and computational points of view, most published finite-element studies in geoelectromagnetics use the lowest order formulation. Solution of the resulting large system of linear equations poses the main practical challenge. We have developed a fully parallel and distributed robust and scalable linear solver based on the optimal block-diagonal and auxiliary space preconditioners. The solver was found to be efficient for high finite element orders, unstructured and nonconforming locally refined meshes, a wide range of frequencies, largemore » conductivity contrasts, and number of degrees of freedom (DoFs). Furthermore, the presented linear solver is in essence algebraic; i.e., it acts on the matrix-vector level and thus requires no information about the discretization, boundary conditions, or physical source used, making it readily efficient for a wide range of electromagnetic modeling problems. To get accurate solutions at reduced computational cost, we have also implemented goal-oriented adaptive mesh refinement. The numerical tests indicated that if highly accurate modeling results were required, the high-order FEM in combination with the goal-oriented local mesh refinement required less computational time and DoFs than the lowest order adaptive FEM.« less

Evaluation of the groundwater-flow model for the Ohio River alluvial aquifer near Carrollton, Kentucky, updated to conditions in September 2010

USGS Publications Warehouse

Unthank, Michael D.

2013-01-01

The Ohio River alluvial aquifer near Carrollton, Ky., is an important water resource for the cities of Carrollton and Ghent, as well as for several industries in the area. The groundwater of the aquifer is the primary source of drinking water in the region and a highly valued natural resource that attracts various water-dependent industries because of its quantity and quality. This report evaluates the performance of a numerical model of the groundwater-flow system in the Ohio River alluvial aquifer near Carrollton, Ky., published by the U.S. Geological Survey in 1999. The original model simulated conditions in November 1995 and was updated to simulate groundwater conditions estimated for September 2010. The files from the calibrated steady-state model of November 1995 conditions were imported into MODFLOW-2005 to update the model to conditions in September 2010. The model input files modified as part of this update were the well and recharge files. The design of the updated model and other input files are the same as the original model. The ability of the updated model to match hydrologic conditions for September 2010 was evaluated by comparing water levels measured in wells to those computed by the model. Water-level measurements were available for 48 wells in September 2010. Overall, the updated model underestimated the water levels at 36 of the 48 measured wells. The average difference between measured water levels and model-computed water levels was 3.4 feet and the maximum difference was 10.9 feet. The root-mean-square error of the simulation was 4.45 for all 48 measured water levels. The updated steady-state model could be improved by introducing more accurate and site-specific estimates of selected field parameters, refined model geometry, and additional numerical methods. Collection of field data to better estimate hydraulic parameters, together with continued review of available data and information from area well operators, could provide the model with revised estimates of conductance values for the riverbed and valley wall, hydraulic conductivities for the model layer, and target water levels for future simulations. Additional model layers, a redesigned model grid, and revised boundary conditions could provide a better framework for more accurate simulations. Additional numerical methods would identify possible parameter estimates and determine parameter sensitivities.

Numerical Modeling in Geodynamics: Success, Failure and Perspective

NASA Astrophysics Data System (ADS)

Ismail-Zadeh, A.

2005-12-01

A real success in numerical modeling of dynamics of the Earth can be achieved only by multidisciplinary research teams of experts in geodynamics, applied and pure mathematics, and computer science. The success in numerical modeling is based on the following basic, but simple, rules. (i) People need simplicity most, but they understand intricacies best (B. Pasternak, writer). Start from a simple numerical model, which describes basic physical laws by a set of mathematical equations, and move then to a complex model. Never start from a complex model, because you cannot understand the contribution of each term of the equations to the modeled geophysical phenomenon. (ii) Study the numerical methods behind your computer code. Otherwise it becomes difficult to distinguish true and erroneous solutions to the geodynamic problem, especially when your problem is complex enough. (iii) Test your model versus analytical and asymptotic solutions, simple 2D and 3D model examples. Develop benchmark analysis of different numerical codes and compare numerical results with laboratory experiments. Remember that the numerical tool you employ is not perfect, and there are small bugs in every computer code. Therefore the testing is the most important part of your numerical modeling. (iv) Prove (if possible) or learn relevant statements concerning the existence, uniqueness and stability of the solution to the mathematical and discrete problems. Otherwise you can solve an improperly-posed problem, and the results of the modeling will be far from the true solution of your model problem. (v) Try to analyze numerical models of a geological phenomenon using as less as possible tuning model variables. Already two tuning variables give enough possibilities to constrain your model well enough with respect to observations. The data fitting sometimes is quite attractive and can take you far from a principal aim of your numerical modeling: to understand geophysical phenomena. (vi) If the number of tuning model variables are greater than two, test carefully the effect of each of the variables on the modeled phenomenon. Remember: With four exponents I can fit an elephant (E. Fermi, physicist). (vii) Make your numerical model as accurate as possible, but never put the aim to reach a great accuracy: Undue precision of computations is the first symptom of mathematical illiteracy (N. Krylov, mathematician). How complex should be a numerical model? A model which images any detail of the reality is as useful as a map of scale 1:1 (J. Robinson, economist). This message is quite important for geoscientists, who study numerical models of complex geodynamical processes. I believe that geoscientists will never create a model of the real Earth dynamics, but we should try to model the dynamics such a way to simulate basic geophysical processes and phenomena. Does a particular model have a predictive power? Each numerical model has a predictive power, otherwise the model is useless. The predictability of the model varies with its complexity. Remember that a solution to the numerical model is an approximate solution to the equations, which have been chosen in believe that they describe dynamic processes of the Earth. Hence a numerical model predicts dynamics of the Earth as well as the mathematical equations describe this dynamics. What methodological advances are still needed for testable geodynamic modeling? Inverse (time-reverse) numerical modeling and data assimilation are new methodologies in geodynamics. The inverse modeling can allow to test geodynamic models forward in time using restored (from present-day observations) initial conditions instead of unknown conditions.

Water planning in a mixed land use Mediterranean area: point-source abstraction and pollution scenarios by a numerical model of varying stream-aquifer regime.

PubMed

Du, Mingxuan; Fouché, Olivier; Zavattero, Elodie; Ma, Qiang; Delestre, Olivier; Gourbesville, Philippe

2018-02-22

Integrated hydrodynamic modelling is an efficient approach for making semi-quantitative scenarios reliable enough for groundwater management, provided that the numerical simulations are from a validated model. The model set-up, however, involves many inputs due to the complexity of both the hydrological system and the land use. The case study of a Mediterranean alluvial unconfined aquifer in the lower Var valley (Southern France) is useful to test a method to estimate lacking data on water abstraction by small farms in urban context. With this estimation of the undocumented pumping volumes, and after calibration of the exchange parameters of the stream-aquifer system with the help of a river model, the groundwater flow model shows a high goodness of fit with the measured potentiometric levels. The consistency between simulated results and real behaviour of the system, with regard to the observed effects of lowering weirs and previously published hydrochemistry data, confirms reliability of the groundwater flow model. On the other hand, accuracy of the transport model output may be influenced by many parameters, many of which are not derived from field measurements. In this case study, for which river-aquifer feeding is the main control, the partition coefficient between direct recharge and runoff does not show a significant effect on the transport model output, and therefore, uncertainty of the hydrological terms such as evapotranspiration and runoff is not a first-rank issue to the pollution propagation. The simulation of pollution scenarios with the model returns expected pessimistic outputs, with regard to hazard management. The model is now ready to be used in a decision support system by the local water supply managers.

Analytical and numerical modeling of the hearing system: Advances towards the assessment of hearing damage.

PubMed

De Paolis, Annalisa; Bikson, Marom; Nelson, Jeremy T; de Ru, J Alexander; Packer, Mark; Cardoso, Luis

2017-06-01

Hearing is an extremely complex phenomenon, involving a large number of interrelated variables that are difficult to measure in vivo. In order to investigate such process under simplified and well-controlled conditions, models of sound transmission have been developed through many decades of research. The value of modeling the hearing system is not only to explain the normal function of the hearing system and account for experimental and clinical observations, but to simulate a variety of pathological conditions that lead to hearing damage and hearing loss, as well as for development of auditory implants, effective ear protections and auditory hazard countermeasures. In this paper, we provide a review of the strategies used to model the auditory function of the external, middle, inner ear, and the micromechanics of the organ of Corti, along with some of the key results obtained from such modeling efforts. Recent analytical and numerical approaches have incorporated the nonlinear behavior of some parameters and structures into their models. Few models of the integrated hearing system exist; in particular, we describe the evolution of the Auditory Hazard Assessment Algorithm for Human (AHAAH) model, used for prediction of hearing damage due to high intensity sound pressure. Unlike the AHAAH model, 3D finite element models of the entire hearing system are not able yet to predict auditory risk and threshold shifts. It is expected that both AHAAH and FE models will evolve towards a more accurate assessment of threshold shifts and hearing loss under a variety of stimuli conditions and pathologies. Copyright © 2017 The Authors. Published by Elsevier B.V. All rights reserved.

Numerical modeling of the radionuclide water pathway with HYDRUS and comparison with the IAEA model of SR 44.

PubMed

Merk, Rainer

2012-02-01

This study depicts a theoretical experiment in which the radionuclide transport through the porous material of a landfill consisting of concrete rubble (e.g., from the decommissioning of nuclear power plants) and the subsequent migration through the vadose zone and aquifer to a model well is calculated by means of the software HYDRUS-1D (Simunek et al., 2008). The radionuclides originally contained within the rubble become dissolved due to leaching caused by infiltrated rainwater. The resulting well-water contamination (in Bq/L) is calculated numerically as a function of time and location and compared with the outcome of a simplified analytic model for the groundwater pathway published by the IAEA (2005). Identical model parameters are considered. The main objective of the present work is to evaluate the predictive capacity of the more simple IAEA model using HYDRUS-1D as a reference. For most of the radionuclides considered (e.g., ¹²⁹I, and ²³⁹Pu), results from applying the IAEA model were found to be comparable to results from the more elaborate HYDRUS modeling, provided the underlying parameter values are comparable. However, the IAEA model appears to underestimate the effects resulting from, for example, high nuclide mobility, short half-life, or short-term variations in the water infiltration. The present results indicate that the IAEA model is suited for screening calculations and general recommendation purposes. However, the analysis of a specific site should be accompanied by detailed HYDRUS computer simulations. In all models considered, the calculation outcome largely depends on the choice of the sorption parameter K(d). Copyright © 2011 Elsevier Ltd. All rights reserved.

The bactericidal effect of shock waves

NASA Astrophysics Data System (ADS)

Leighs, J. A.; Appleby-Thomas, G. J.; Wood, D. C.; Goff, M. J.; Hameed, A.; Hazell, P. J.

2014-05-01

There are a variety of theories relating to the origins of life on our home planet, some of which discuss the possibility that life may have been spread via inter-planetary bodies. There have been a number of investigations into the ability of life to withstand the likely conditions generated by asteroid impact (both contained in the impactor and buried beneath the planet surface). Previously published data regarding the ability of bacteria to survive such applied shockwaves has produced conflicting conclusions. The work presented here used an established and published technique in combination with a single stage gas gun, to shock and subsequently recover Escherichia coli populations suspended in a phosphate buffered saline solution. Peak pressure across the sample region was calculated via numerical modelling. Survival data against peak sample pressure for recovered samples is presented alongside control tests. SEM micrographs of shocked samples are presented alongside control sets to highlight key differences between cells in each case.

Physical oceanography and tracer chemistry of the southern ocean

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

This report considers technical and scientific developments and research questions in studies of the Southern Ocean since its predecessor, /open quotes/Southern Ocean Dynamics--A Strategy for Scientific Exploration 1973-1983/close quotes/ was published. The summary lists key research questions in Southern Ocean oceanography. Chapter 1 describes how Southern Ocean research has evolved to provide the basis for timely research toward more directed objectives. Chapter 2 recommends four research programs, encompassing many of the specific recommendations that follow. Appendix A provides the scientific background and Reference/Bibliography list for this report for: on air-sea-ice interaction; the Antarctic Circumpolar Current; water mass conversion; chemical tracermore » oceanography; and numerical modeling of the Southern Ocean. Appendix B describes the satellite-based observation systems expected to be active during the next decade. Appendix C is a list of relevant reports published during 1981-1987. 146 refs.« less

Modeling variably saturated multispecies reactive groundwater solute transport with MODFLOW-UZF and RT3D

USGS Publications Warehouse

Bailey, Ryan T.; Morway, Eric D.; Niswonger, Richard G.; Gates, Timothy K.

2013-01-01

A numerical model was developed that is capable of simulating multispecies reactive solute transport in variably saturated porous media. This model consists of a modified version of the reactive transport model RT3D (Reactive Transport in 3 Dimensions) that is linked to the Unsaturated-Zone Flow (UZF1) package and MODFLOW. Referred to as UZF-RT3D, the model is tested against published analytical benchmarks as well as other published contaminant transport models, including HYDRUS-1D, VS2DT, and SUTRA, and the coupled flow and transport modeling system of CATHY and TRAN3D. Comparisons in one-dimensional, two-dimensional, and three-dimensional variably saturated systems are explored. While several test cases are included to verify the correct implementation of variably saturated transport in UZF-RT3D, other cases are included to demonstrate the usefulness of the code in terms of model run-time and handling the reaction kinetics of multiple interacting species in variably saturated subsurface systems. As UZF1 relies on a kinematic-wave approximation for unsaturated flow that neglects the diffusive terms in Richards equation, UZF-RT3D can be used for large-scale aquifer systems for which the UZF1 formulation is reasonable, that is, capillary-pressure gradients can be neglected and soil parameters can be treated as homogeneous. Decreased model run-time and the ability to include site-specific chemical species and chemical reactions make UZF-RT3D an attractive model for efficient simulation of multispecies reactive transport in variably saturated large-scale subsurface systems.

The role of population inertia in predicting the outcome of stage-structured biological invasions.

PubMed

Guiver, Chris; Dreiwi, Hanan; Filannino, Donna-Maria; Hodgson, Dave; Lloyd, Stephanie; Townley, Stuart

2015-07-01

Deterministic dynamic models for coupled resident and invader populations are considered with the purpose of finding quantities that are effective at predicting when the invasive population will become established asymptotically. A key feature of the models considered is the stage-structure, meaning that the populations are described by vectors of discrete developmental stage- or age-classes. The vector structure permits exotic transient behaviour-phenomena not encountered in scalar models. Analysis using a linear Lyapunov function demonstrates that for the class of population models considered, a large so-called population inertia is indicative of successful invasion. Population inertia is an indicator of transient growth or decline. Furthermore, for the class of models considered, we find that the so-called invasion exponent, an existing index used in models for invasion, is not always a reliable comparative indicator of successful invasion. We highlight these findings through numerical examples and a biological interpretation of why this might be the case is discussed. Copyright © 2015. Published by Elsevier Inc.

The acquired preparedness risk model applied to smoking in 5th grade children.

PubMed

Combs, Jessica L; Spillane, Nichea S; Caudill, Leann; Stark, Brittany; Smith, Gregory T

2012-03-01

The very early onset of smoking predicts numerous health problems. The authors conducted the first test of one risk model for elementary school age smoking, known as the acquired preparedness (AP) model of risk, in a cross-sectional sample of 309 5th grade children. The model posits that (a) impulsivity-related personality traits contribute to risk for a variety of risky, maladaptive behaviors; (b) smoking expectancies confer risk only for smoking; and (c) the personality traits contribute to the formation of high risk expectancies for reinforcement from smoking, which in turn increases the likelihood of early onset smoking. The model was supported: the high-risk personality traits distinguished children engaging in any risky, maladaptive behavior from other children, and the smoking expectancies differentiated smokers from all other children. The relationship between personality tendencies to act rashly when experiencing intense positive or negative emotions and smoker status was partially mediated by expectancies for reinforcement from smoking. This model should be investigated longitudinally. Copyright © 2011. Published by Elsevier Ltd.

Modelling of peak temperature during friction stir processing of magnesium alloy AZ91

NASA Astrophysics Data System (ADS)

Vaira Vignesh, R.; Padmanaban, R.

2018-02-01

Friction stir processing (FSP) is a solid state processing technique with potential to modify the properties of the material through microstructural modification. The study of heat transfer in FSP aids in the identification of defects like flash, inadequate heat input, poor material flow and mixing etc. In this paper, transient temperature distribution during FSP of magnesium alloy AZ91 was simulated using finite element modelling. The numerical model results were validated using the experimental results from the published literature. The model was used to predict the peak temperature obtained during FSP for various process parameter combinations. The simulated peak temperature results were used to develop a statistical model. The effect of process parameters namely tool rotation speed, tool traverse speed and shoulder diameter of the tool on the peak temperature was investigated using the developed statistical model. It was found that peak temperature was directly proportional to tool rotation speed and shoulder diameter and inversely proportional to tool traverse speed.

Analysis of the criteria used by the International Commission on Radiological Protection to justify the setting of numerical protection level values.

PubMed

2006-01-01

This report compiles the various numerical protection level values published by the International Commission on Radiological Protection (ICRP) since its 1990 Recommendations (Publication 60). Several terms are used to denominate the protection levels: individual dose limit, 'maximum' individual dose, dose constraint, exemption level, exclusion level, action level, or intervention level. The reasons provided by the Commission for selecting the associated numerical values is quoted as far as available. In some cases the rationale is not totally explicit in the original ICRP report concerned; in such cases the Task Group that prepared the present report have proposed their own interpretation. Originally, this report was prepared by a Task Group at CEPN, a French research and development center, in behalf of IRSN, a French public expert body engaged in radiological protection and nuclear safety. It is published here with kind permission by CEPN and IRSN.

SPH modelling of depth-limited turbulent open channel flows over rough boundaries.

PubMed

Kazemi, Ehsan; Nichols, Andrew; Tait, Simon; Shao, Songdong

2017-01-10

A numerical model based on the smoothed particle hydrodynamics method is developed to simulate depth-limited turbulent open channel flows over hydraulically rough beds. The 2D Lagrangian form of the Navier-Stokes equations is solved, in which a drag-based formulation is used based on an effective roughness zone near the bed to account for the roughness effect of bed spheres and an improved sub-particle-scale model is applied to account for the effect of turbulence. The sub-particle-scale model is constructed based on the mixing-length assumption rather than the standard Smagorinsky approach to compute the eddy-viscosity. A robust in/out-flow boundary technique is also proposed to achieve stable uniform flow conditions at the inlet and outlet boundaries where the flow characteristics are unknown. The model is applied to simulate uniform open channel flows over a rough bed composed of regular spheres and validated by experimental velocity data. To investigate the influence of the bed roughness on different flow conditions, data from 12 experimental tests with different bed slopes and uniform water depths are simulated, and a good agreement has been observed between the model and experimental results of the streamwise velocity and turbulent shear stress. This shows that both the roughness effect and flow turbulence should be addressed in order to simulate the correct mechanisms of turbulent flow over a rough bed boundary and that the presented smoothed particle hydrodynamics model accomplishes this successfully. © 2016 The Authors International Journal for Numerical Methods in Fluids Published by John Wiley & Sons Ltd.

Rotational degree-of-freedom synthesis: An optimised finite difference method for non-exact data

NASA Astrophysics Data System (ADS)

Gibbons, T. J.; Öztürk, E.; Sims, N. D.

2018-01-01

Measuring the rotational dynamic behaviour of a structure is important for many areas of dynamics such as passive vibration control, acoustics, and model updating. Specialist and dedicated equipment is often needed, unless the rotational degree-of-freedom is synthesised based upon translational data. However, this involves numerically differentiating the translational mode shapes to approximate the rotational modes, for example using a finite difference algorithm. A key challenge with this approach is choosing the measurement spacing between the data points, an issue which has often been overlooked in the published literature. The present contribution will for the first time prove that the use of a finite difference approach can be unstable when using non-exact measured data and a small measurement spacing, for beam-like structures. Then, a generalised analytical error analysis is used to propose an optimised measurement spacing, which balances the numerical error of the finite difference equation with the propagation error from the perturbed data. The approach is demonstrated using both numerical and experimental investigations. It is shown that by obtaining a small number of test measurements it is possible to optimise the measurement accuracy, without any further assumptions on the boundary conditions of the structure.

Numerical simulation of fluid flow and heat transfer in enhanced copper tube

NASA Astrophysics Data System (ADS)

Rahman, M. M.; Zhen, T.; Kadir, A. K.

2013-06-01

Inner grooved tube is enhanced with grooves by increasing the inner surface area. Due to its high efficiency of heat transfer, it is used widely in power generation, air conditioning and many other applications. Heat exchanger is one of the example that uses inner grooved tube to enhance rate heat transfer. Precision in production of inner grooved copper tube is very important because it affects the tube's performance due to various tube parameters. Therefore, it is necessary to carry out analysis in optimizing tube performance prior to production in order to avoid unnecessary loss. The analysis can be carried out either through experimentation or numerical simulation. However, experimental study is too costly and takes longer time in gathering necessary information. Therefore, numerical simulation is conducted instead of experimental research. Firstly, the model of inner grooved tube was generated using SOLIDWORKS. Then it was imported into GAMBIT for healing, followed by meshing, boundary types and zones settings. Next, simulation was done in FLUENT where all the boundary conditions are set. The simulation results were observed and compared with published experimental results. It showed that heat transfer enhancement in range of 649.66% to 917.22% of inner grooved tube compared to plain tube.

Programming biological models in Python using PySB.

PubMed

Lopez, Carlos F; Muhlich, Jeremy L; Bachman, John A; Sorger, Peter K

2013-01-01

Mathematical equations are fundamental to modeling biological networks, but as networks get large and revisions frequent, it becomes difficult to manage equations directly or to combine previously developed models. Multiple simultaneous efforts to create graphical standards, rule-based languages, and integrated software workbenches aim to simplify biological modeling but none fully meets the need for transparent, extensible, and reusable models. In this paper we describe PySB, an approach in which models are not only created using programs, they are programs. PySB draws on programmatic modeling concepts from little b and ProMot, the rule-based languages BioNetGen and Kappa and the growing library of Python numerical tools. Central to PySB is a library of macros encoding familiar biochemical actions such as binding, catalysis, and polymerization, making it possible to use a high-level, action-oriented vocabulary to construct detailed models. As Python programs, PySB models leverage tools and practices from the open-source software community, substantially advancing our ability to distribute and manage the work of testing biochemical hypotheses. We illustrate these ideas using new and previously published models of apoptosis.

Programming biological models in Python using PySB

PubMed Central

Lopez, Carlos F; Muhlich, Jeremy L; Bachman, John A; Sorger, Peter K

2013-01-01

Mathematical equations are fundamental to modeling biological networks, but as networks get large and revisions frequent, it becomes difficult to manage equations directly or to combine previously developed models. Multiple simultaneous efforts to create graphical standards, rule-based languages, and integrated software workbenches aim to simplify biological modeling but none fully meets the need for transparent, extensible, and reusable models. In this paper we describe PySB, an approach in which models are not only created using programs, they are programs. PySB draws on programmatic modeling concepts from little b and ProMot, the rule-based languages BioNetGen and Kappa and the growing library of Python numerical tools. Central to PySB is a library of macros encoding familiar biochemical actions such as binding, catalysis, and polymerization, making it possible to use a high-level, action-oriented vocabulary to construct detailed models. As Python programs, PySB models leverage tools and practices from the open-source software community, substantially advancing our ability to distribute and manage the work of testing biochemical hypotheses. We illustrate these ideas using new and previously published models of apoptosis. PMID:23423320

Predicting permeability of regular tissue engineering scaffolds: scaling analysis of pore architecture, scaffold length, and fluid flow rate effects.

PubMed

Rahbari, A; Montazerian, H; Davoodi, E; Homayoonfar, S

2017-02-01

The main aim of this research is to numerically obtain the permeability coefficient in the cylindrical scaffolds. For this purpose, a mathematical analysis was performed to derive an equation for desired porosity in terms of morphological parameters. Then, the considered cylindrical geometries were modeled and the permeability coefficient was calculated according to the velocity and pressure drop values based on the Darcy's law. In order to validate the accuracy of the present numerical solution, the obtained permeability coefficient was compared with the published experimental data. It was observed that this model can predict permeability with the utmost accuracy. Then, the effect of geometrical parameters including porosity, scaffold pore structure, unit cell size, and length of the scaffolds as well as entrance mass flow rate on the permeability of porous structures was studied. Furthermore, a parametric study with scaling laws analysis of sample length and mass flow rate effects on the permeability showed good fit to the obtained data. It can be concluded that the sensitivity of permeability is more noticeable at higher porosities. The present approach can be used to characterize and optimize the scaffold microstructure due to the necessity of cell growth and transferring considerations.

GTA weld penetration and the effects of deviations in machine variables

DOE Office of Scientific and Technical Information (OSTI.GOV)

Giedt, W.H.

1987-07-01

Analytical models for predicting the temperature distribution during GTA welding are reviewed with the purpose of developing a procedure for investigating the effects of deviations in machine parameters. The objective was to determine the accuracy required in machine settings to obtain reproducible results. This review revealed a wide range of published values (21 to 90%) for the arc heating efficiency. Low values (21 to 65%) were associated with evaluation of efficiency using constant property conduction models. Values from 75 to 90% were determined from calorimetric type measurements and are applicable for more accurate numerical solution procedures. Although numerical solutions canmore » yield better overall weld zone predictions, calculations are lengthy and complex. In view of this and the indication that acceptable agreement with experimental measurements can be achieved with the moving-point-source solution, it was utilized to investigate the effects of deviations or errors in voltage, current, and travel speed on GTA weld penetration. Variations resulting from welding within current goals for voltage (+-0.1 V), current (+-3.0 A), and travel speed (+-2.0%) were found to be +-2 to 4%, with voltage and current being more influential than travel speed.« less

Numerical prediction of fiber orientation in injection-molded short-fiber/thermoplastic composite parts with experimental validation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thi, Thanh Binh Nguyen; Morioka, Mizuki; Yokoyama, Atsushi

Numerical prediction of the fiber orientation in the short-glass fiber (GF) reinforced polyamide 6 (PA6) composites with the fiber weight concentration of 30%, 50%, and 70% manufactured by the injection molding process is presented. And the fiber orientation was also directly observed and measured through X-ray computed tomography. During the injection molding process of the short-fiber/thermoplastic composite, the fiber orientation is produced by the flow states and the fiber-fiber interaction. Folgar and Tucker equation is the well known for modeling the fiber orientation in a concentrated suspension. They included into Jeffrey’s equation a diffusive type of term by introducing amore » phenomenological coefficient to account for the fiber-fiber interaction. Our developed model for the fiber-fiber interaction was proposed by modifying the rotary diffusion term of the Folgar-Tucker equation. This model was presented in a conference paper of the 29{sup th} International Conference of the Polymer Processing Society published by AIP conference proceeding. For modeling fiber interaction, the fiber dynamic simulation was introduced in order to obtain a global fiber interaction coefficient, which is sum function of the fiber concentration, aspect ratio, and angular velocity. The fiber orientation is predicted by using the proposed fiber interaction model incorporated into a computer aided engineering simulation package C-Mold. An experimental program has been carried out in which the fiber orientation distribution has been measured in 100 x 100 x 2 mm injection-molded plate and 100 x 80 x 2 mm injection-molded weld by analyzed with a high resolution 3D X-ray computed tomography system XVA-160α, and calculated by X-ray computed tomography imaging. The numerical prediction shows a good agreement with experimental validation. And the complex fiber orientation in the injection-molded weld was investigated.« less

Numerical prediction of fiber orientation in injection-molded short-fiber/thermoplastic composite parts with experimental validation

NASA Astrophysics Data System (ADS)

Thi, Thanh Binh Nguyen; Morioka, Mizuki; Yokoyama, Atsushi; Hamanaka, Senji; Yamashita, Katsuhisa; Nonomura, Chisato

2015-05-01

Numerical prediction of the fiber orientation in the short-glass fiber (GF) reinforced polyamide 6 (PA6) composites with the fiber weight concentration of 30%, 50%, and 70% manufactured by the injection molding process is presented. And the fiber orientation was also directly observed and measured through X-ray computed tomography. During the injection molding process of the short-fiber/thermoplastic composite, the fiber orientation is produced by the flow states and the fiber-fiber interaction. Folgar and Tucker equation is the well known for modeling the fiber orientation in a concentrated suspension. They included into Jeffrey's equation a diffusive type of term by introducing a phenomenological coefficient to account for the fiber-fiber interaction. Our developed model for the fiber-fiber interaction was proposed by modifying the rotary diffusion term of the Folgar-Tucker equation. This model was presented in a conference paper of the 29th International Conference of the Polymer Processing Society published by AIP conference proceeding. For modeling fiber interaction, the fiber dynamic simulation was introduced in order to obtain a global fiber interaction coefficient, which is sum function of the fiber concentration, aspect ratio, and angular velocity. The fiber orientation is predicted by using the proposed fiber interaction model incorporated into a computer aided engineering simulation package C-Mold. An experimental program has been carried out in which the fiber orientation distribution has been measured in 100 x 100 x 2 mm injection-molded plate and 100 x 80 x 2 mm injection-molded weld by analyzed with a high resolution 3D X-ray computed tomography system XVA-160α, and calculated by X-ray computed tomography imaging. The numerical prediction shows a good agreement with experimental validation. And the complex fiber orientation in the injection-molded weld was investigated.

Modeling radiation belt dynamics using a 3-D layer method code

NASA Astrophysics Data System (ADS)

Wang, C.; Ma, Q.; Tao, X.; Zhang, Y.; Teng, S.; Albert, J. M.; Chan, A. A.; Li, W.; Ni, B.; Lu, Q.; Wang, S.

2017-08-01

A new 3-D diffusion code using a recently published layer method has been developed to analyze radiation belt electron dynamics. The code guarantees the positivity of the solution even when mixed diffusion terms are included. Unlike most of the previous codes, our 3-D code is developed directly in equatorial pitch angle (α0), momentum (p), and L shell coordinates; this eliminates the need to transform back and forth between (α0,p) coordinates and adiabatic invariant coordinates. Using (α0,p,L) is also convenient for direct comparison with satellite data. The new code has been validated by various numerical tests, and we apply the 3-D code to model the rapid electron flux enhancement following the geomagnetic storm on 17 March 2013, which is one of the Geospace Environment Modeling Focus Group challenge events. An event-specific global chorus wave model, an AL-dependent statistical plasmaspheric hiss wave model, and a recently published radial diffusion coefficient formula from Time History of Events and Macroscale Interactions during Substorms (THEMIS) statistics are used. The simulation results show good agreement with satellite observations, in general, supporting the scenario that the rapid enhancement of radiation belt electron flux for this event results from an increased level of the seed population by radial diffusion, with subsequent acceleration by chorus waves. Our results prove that the layer method can be readily used to model global radiation belt dynamics in three dimensions.

Local box-counting dimensions of discrete quantum eigenvalue spectra: Analytical connection to quantum spectral statistics

NASA Astrophysics Data System (ADS)

Sakhr, Jamal; Nieminen, John M.

2018-03-01

Two decades ago, Wang and Ong, [Phys. Rev. A 55, 1522 (1997)], 10.1103/PhysRevA.55.1522 hypothesized that the local box-counting dimension of a discrete quantum spectrum should depend exclusively on the nearest-neighbor spacing distribution (NNSD) of the spectrum. In this Rapid Communication, we validate their hypothesis by deriving an explicit formula for the local box-counting dimension of a countably-infinite discrete quantum spectrum. This formula expresses the local box-counting dimension of a spectrum in terms of single and double integrals of the NNSD of the spectrum. As applications, we derive an analytical formula for Poisson spectra and closed-form approximations to the local box-counting dimension for spectra having Gaussian orthogonal ensemble (GOE), Gaussian unitary ensemble (GUE), and Gaussian symplectic ensemble (GSE) spacing statistics. In the Poisson and GOE cases, we compare our theoretical formulas with the published numerical data of Wang and Ong and observe excellent agreement between their data and our theory. We also study numerically the local box-counting dimensions of the Riemann zeta function zeros and the alternate levels of GOE spectra, which are often used as numerical models of spectra possessing GUE and GSE spacing statistics, respectively. In each case, the corresponding theoretical formula is found to accurately describe the numerically computed local box-counting dimension.

Optimal control design of turbo spin‐echo sequences with applications to parallel‐transmit systems

PubMed Central

Hoogduin, Hans; Hajnal, Joseph V.; van den Berg, Cornelis A. T.; Luijten, Peter R.; Malik, Shaihan J.

2016-01-01

Purpose The design of turbo spin‐echo sequences is modeled as a dynamic optimization problem which includes the case of inhomogeneous transmit radiofrequency fields. This problem is efficiently solved by optimal control techniques making it possible to design patient‐specific sequences online. Theory and Methods The extended phase graph formalism is employed to model the signal evolution. The design problem is cast as an optimal control problem and an efficient numerical procedure for its solution is given. The numerical and experimental tests address standard multiecho sequences and pTx configurations. Results Standard, analytically derived flip angle trains are recovered by the numerical optimal control approach. New sequences are designed where constraints on radiofrequency total and peak power are included. In the case of parallel transmit application, the method is able to calculate the optimal echo train for two‐dimensional and three‐dimensional turbo spin echo sequences in the order of 10 s with a single central processing unit (CPU) implementation. The image contrast is maintained through the whole field of view despite inhomogeneities of the radiofrequency fields. Conclusion The optimal control design sheds new light on the sequence design process and makes it possible to design sequences in an online, patient‐specific fashion. Magn Reson Med 77:361–373, 2017. © 2016 The Authors Magnetic Resonance in Medicine published by Wiley Periodicals, Inc. on behalf of International Society for Magnetic Resonance in Medicine PMID:26800383

State of the field: An informatics-based systematic review of the SOD1-G93A amyotrophic lateral sclerosis transgenic mouse model

PubMed Central

Kim, Renaid B.; Irvin, Cameron W.; Tilva, Keval R.; Mitchell, Cassie S.

2016-01-01

Numerous sub-cellular through system-level disturbances have been identified in over 1300 articles examining the superoxide dismutase-1 guanine 93 to alanine (SOD1-G93A) transgenic mouse amyotrophic lateral sclerosis (ALS) pathophysiology. Manual assessment of such a broad literature base is daunting. We performed a comprehensive informatics-based systematic review or ‘field analysis’ to agnostically compute and map the current state of the field. Text mining of recaptured articles was used to quantify published data topic breadth and frequency. We constructed a nine-category pathophysiological function-based ontology to systematically organize and quantify the field's primary data. Results demonstrated that the distribution of primary research belonging to each category is: systemic measures an motor function, 59%; inflammation, 46%; cellular energetics, 37%; proteomics, 31%; neural excitability, 22%; apoptosis, 20%; oxidative stress, 18%; aberrant cellular chemistry, 14%; axonal transport, 10%. We constructed a SOD1-G93A field map that visually illustrates and categorizes the 85% most frequently assessed sub-topics. Finally, we present the literature-cited significance of frequently published terms and uncover thinly investigated areas. In conclusion, most articles individually examine at least two categories, which is indicative of the numerous underlying pathophysiological interrelationships. An essential future path is examination of cross-category pathophysiological interrelationships and their co-correspondence to homeostatic regulation and disease progression. PMID:25998063

The orbit of asteroid (99942) Apophis as determined from optical and radar observations

NASA Astrophysics Data System (ADS)

Vinogradova, T. A.; Kochetova, O. M.; Chernetenko, Yu. A.; Shor, V. A.; Yagudina, E. I.

2008-08-01

The results of improving the orbit accuracy for the asteroid Apophis and the circumstances of its approach to Earth in 2029 are described. Gravitational perturbations from all of the major planets and Pluto, Ceres, Pallas, and Vesta are taken into account in the equations of motion of the asteroid. Relativistic perturbations from the Sun and perturbations due to the oblateness of the Sun and Earth and due to the light pressure are also included in the model. Perturbations from the Earth and Moon are considered separately. The coordinates of the perturbing bodies are calculated using DE405. The phase correction and the gravitational deflection of light are taken into account. The numerical integration of the equations of motion and equations in variations is performed by the 15th-order Everhart method. The error of the numerical integration over the 2005 2029 interval, estimated using forward and backward computations, is not more than 3 × 10-11 AU. Improved coordinates and velocities at epoch JD2454200.5 (April 10, 2007) were obtained applying the weighted leastsquares fit. For the period from March 15, 2004, to August 16, 2006, 989 optical and 7 radar observations were used. The resulting system represents the optical observations with an error of 0.37 (66 conditional equations were rejected). The residuals of the radar observations are an order, or more, smaller than their errors. The system of Apophis’ elements and the estimates of their precision obtained in this study are in perfect agreement with the results published by other authors. The minimum Apophis-Earth distance is about 38 200 km on April 13, 2029. This estimate agrees to within 20 km with those calculated based on other published systems of elements. The effect of some model components on the minimum distance is estimated.

Development of a Two-fluid Drag Law for Clustered Particles using Direct Numerical Simulation and Validation through Experiments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gokaltun, Seckin; Munroe, Norman; Subramaniam, Shankar

2014-12-31

This study presents a new drag model, based on the cohesive inter-particle forces, implemented in the MFIX code. This new drag model combines an existing standard model in MFIX with a particle-based drag model based on a switching principle. Switches between the models in the computational domain occur where strong particle-to-particle cohesion potential is detected. Three versions of the new model were obtained by using one standard drag model in each version. Later, performance of each version was compared against available experimental data for a fluidized bed, published in the literature and used extensively by other researchers for validation purposes.more » In our analysis of the results, we first observed that standard models used in this research were incapable of producing closely matching results. Then, we showed for a simple case that a threshold is needed to be set on the solid volume fraction. This modification was applied to avoid non-physical results for the clustering predictions, when governing equation of the solid granular temperate was solved. Later, we used our hybrid technique and observed the capability of our approach in improving the numerical results significantly; however, improvement of the results depended on the threshold of the cohesive index, which was used in the switching procedure. Our results showed that small values of the threshold for the cohesive index could result in significant reduction of the computational error for all the versions of the proposed drag model. In addition, we redesigned an existing circulating fluidized bed (CFB) test facility in order to create validation cases for clustering regime of Geldart A type particles.« less

Process Simulation of Cold Pressing and Sintering of Armstrong CP-Ti Powders

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gorti, Sarma B; Sabau, Adrian S; Peter, William H

A computational methodology is presented for the process simulation of cold pressing and sintering of Armstrong CP-Ti powders. Since the powder consolidation is governed by specific pressure-dependent constitutive equations, solution algorithms were developed for the ABAQUS user material subroutine, UMAT, for computing the plastic strain increments based on an implicit integration of the nonlinear yield function, flow rule, and hardening equations. Sintering was simulated using a model based on diffusional creep using the user subroutine CREEP. The initial mesh, stress, and density for the simulation of sintering were obtained from the results of the cold pressing simulation, minimizing the errorsmore » from decoupling the cold pressing and sintering simulations. Numerical simulation results are presented for the cold compaction followed by a sintering step of the Ti powders. The numerical simulation results for the relative density were compared to those measured from experiments before and after sintering, showing that the relative density can be accurately predicted. Notice: This manuscript has been authored by UT-Battelle, LLC, under Contract No. DE-AC05-00OR22725 with the U.S. Department of Energy. The United States Government retains and the publisher, by accepting the article for publication, acknowledges that the United States Government retains a non-exclusive, paid-up, irrevocable, world-wide license to publish or reproduce the published form of this manuscript, or allow others to do so, for United States Government purposes. ACKNOWLEDGEMENTS This research was sponsored by the U.S. DOE, and carried out at ORNL, under Contract DE-AC05-00OR22725 with UT-Battelle, LLC. This research was sponsored by the U.S. DOE, EERE Industrial Technology Program Office under CPS Agreement # 17881.« less

Evaluation of possible head injuries ensuing a cricket ball impact.

PubMed

Mohotti, Damith; Fernando, P L N; Zaghloul, Amir

2018-05-01

The aim of this research is to study the behaviour of a human head during the event of an impact of a cricket ball. While many recent incidents were reported in relation to head injuries caused by the impact of cricket balls, there is no clear information available in the published literature about the possible threat levels and the protection level of the current protective equipment. This research investigates the effects of an impact of a cricket ball on a human head and the level of protection offered by the existing standard cricket helmet. An experimental program was carried out to measure the localised pressure caused by the impact of standard cricket balls. The balls were directed at a speed of 110 km/h on a 3D printed head model, with and without a standard cricket helmet. Numerical simulations were carried out using advanced finite element package LS-DYNA to validate the experimental results. The experimental and numerical results showed approximately a 60% reduction in the pressure on the head model when the helmet was used. Both frontal and side impact resulted in head acceleration values in the range of 225-250 g at a ball speed of 110 km/h. There was a 36% reduction observed in the peak acceleration of the brain when wearing a helmet. Furthermore, numerical simulations showed a 67% reduction in the force on the skull and a 95% reduction in the skull internal energy when introducing the helmet. (1) Upon impact, high localised pressure could cause concussion for a player without helmet. (2) When a helmet was used, the acceleration of the brain observed in the numerical results was at non-critical levels according to existing standards. (3) A significant increase in the threat levels was observed for a player without helmet, based on force, pressure, acceleration and energy criteria, which resulted in recommending the compulsory use of the cricket helmet. (4) Numerical results showed a good correlation with experimental results and hence, the numerical technique used in this study can be recommended for future applications. Copyright © 2018 Elsevier B.V. All rights reserved.

The challenges in developing a finite element injury model of the neck to predict the penetration of explosively propelled projectiles.

PubMed

Breeze, Johno; Newbery, T; Pope, D; Midwinter, M J

2014-09-01

Neck injuries sustained by UK service personnel serving on current operations from explosively propelled fragments result in significant mortality and long-term morbidity. Many of these injuries could potentially have been prevented had the soldiers been wearing their issued neck collars at the time of injury. The aim of this research is to develop an accurate method of predicting the resultant damage to cervical neurovascular structures from explosively propelled fragments. A finite element numerical model has been developed based on an anatomically accurate, anthropometrically representative 3D mathematical mesh of cervical neurovascular structures. Currently, the model simulates the passage of a fragment simulating projectile through all anatomical components of the neck using material models based upon 20% ballistic gelatin on the simplification that all tissue types act like homogenous muscle. The material models used to define the properties of each element within the model will be sequentially replaced by ones specific to each individual tissue within an anatomical structure. However, the cumulative effect of so many additional variables will necessitate experimental validation against both animal models and post-mortem human subjects to improve the credibility of any predictions made by the model. We believe this approach will in the future have the potential to enable objective comparisons between the mitigative effects of different body armour systems to be made with resultant time and financial savings. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions.

Clinical Prediction Models for Cardiovascular Disease: Tufts Predictive Analytics and Comparative Effectiveness Clinical Prediction Model Database.

PubMed

Wessler, Benjamin S; Lai Yh, Lana; Kramer, Whitney; Cangelosi, Michael; Raman, Gowri; Lutz, Jennifer S; Kent, David M

2015-07-01

Clinical prediction models (CPMs) estimate the probability of clinical outcomes and hold the potential to improve decision making and individualize care. For patients with cardiovascular disease, there are numerous CPMs available although the extent of this literature is not well described. We conducted a systematic review for articles containing CPMs for cardiovascular disease published between January 1990 and May 2012. Cardiovascular disease includes coronary heart disease, heart failure, arrhythmias, stroke, venous thromboembolism, and peripheral vascular disease. We created a novel database and characterized CPMs based on the stage of development, population under study, performance, covariates, and predicted outcomes. There are 796 models included in this database. The number of CPMs published each year is increasing steadily over time. Seven hundred seventeen (90%) are de novo CPMs, 21 (3%) are CPM recalibrations, and 58 (7%) are CPM adaptations. This database contains CPMs for 31 index conditions, including 215 CPMs for patients with coronary artery disease, 168 CPMs for population samples, and 79 models for patients with heart failure. There are 77 distinct index/outcome pairings. Of the de novo models in this database, 450 (63%) report a c-statistic and 259 (36%) report some information on calibration. There is an abundance of CPMs available for a wide assortment of cardiovascular disease conditions, with substantial redundancy in the literature. The comparative performance of these models, the consistency of effects and risk estimates across models and the actual and potential clinical impact of this body of literature is poorly understood. © 2015 American Heart Association, Inc.

Temperature modelling and prediction for activated sludge systems.

PubMed

Lippi, S; Rosso, D; Lubello, C; Canziani, R; Stenstrom, M K

2009-01-01

Temperature is an important factor affecting biomass activity, which is critical to maintain efficient biological wastewater treatment, and also physiochemical properties of mixed liquor as dissolved oxygen saturation and settling velocity. Controlling temperature is not normally possible for treatment systems but incorporating factors impacting temperature in the design process, such as aeration system, surface to volume ratio, and tank geometry can reduce the range of temperature extremes and improve the overall process performance. Determining how much these design or up-grade options affect the tank temperature requires a temperature model that can be used with existing design methodologies. This paper presents a new steady state temperature model developed by incorporating the best aspects of previously published models, introducing new functions for selected heat exchange paths and improving the method for predicting the effects of covering aeration tanks. Numerical improvements with embedded reference data provide simpler formulation, faster execution, easier sensitivity analyses, using an ordinary spreadsheet. The paper presents several cases to validate the model.

Simultaneous and Comparable Numerical Indicators of International, National and Local Collaboration Practices in English-Medium Astrophysics Research Papers

ERIC Educational Resources Information Center

Méndez, David I.; Alcaraz, M. Ángeles

2016-01-01

Introduction: We report an investigation on collaboration practices in research papers published in the most prestigious English-medium astrophysics journals. Method: We propose an evaluation method based on three numerical indicators to study and compare, in absolute terms, three different types of collaboration (international, national and…

The Statistical and Methodological Acuity of Scholarship Appearing in the "International Journal of Listening" (1987-2011)

ERIC Educational Resources Information Center

Keaton, Shaughan A.; Bodie, Graham D.

2013-01-01

This article investigates the quality of social scientific listening research that reports numerical data to substantiate claims appearing in the "International Journal of Listening" between 1987 and 2011. Of the 225 published articles, 100 included one or more studies reporting numerical data. We frame our results in terms of eight…

A Novel Method to Verify Multilevel Computational Models of Biological Systems Using Multiscale Spatio-Temporal Meta Model Checking

PubMed Central

Gilbert, David

2016-01-01

Insights gained from multilevel computational models of biological systems can be translated into real-life applications only if the model correctness has been verified first. One of the most frequently employed in silico techniques for computational model verification is model checking. Traditional model checking approaches only consider the evolution of numeric values, such as concentrations, over time and are appropriate for computational models of small scale systems (e.g. intracellular networks). However for gaining a systems level understanding of how biological organisms function it is essential to consider more complex large scale biological systems (e.g. organs). Verifying computational models of such systems requires capturing both how numeric values and properties of (emergent) spatial structures (e.g. area of multicellular population) change over time and across multiple levels of organization, which are not considered by existing model checking approaches. To address this limitation we have developed a novel approximate probabilistic multiscale spatio-temporal meta model checking methodology for verifying multilevel computational models relative to specifications describing the desired/expected system behaviour. The methodology is generic and supports computational models encoded using various high-level modelling formalisms because it is defined relative to time series data and not the models used to generate it. In addition, the methodology can be automatically adapted to case study specific types of spatial structures and properties using the spatio-temporal meta model checking concept. To automate the computational model verification process we have implemented the model checking approach in the software tool Mule (http://mule.modelchecking.org). Its applicability is illustrated against four systems biology computational models previously published in the literature encoding the rat cardiovascular system dynamics, the uterine contractions of labour, the Xenopus laevis cell cycle and the acute inflammation of the gut and lung. Our methodology and software will enable computational biologists to efficiently develop reliable multilevel computational models of biological systems. PMID:27187178

System monitoring and diagnosis with qualitative models

NASA Technical Reports Server (NTRS)

Kuipers, Benjamin

1991-01-01

A substantial foundation of tools for model-based reasoning with incomplete knowledge was developed: QSIM (a qualitative simulation program) and its extensions for qualitative simulation; Q2, Q3 and their successors for quantitative reasoning on a qualitative framework; and the CC (component-connection) and QPC (Qualitative Process Theory) model compilers for building QSIM QDE (qualitative differential equation) models starting from different ontological assumptions. Other model-compilers for QDE's, e.g., using bond graphs or compartmental models, have been developed elsewhere. These model-building tools will support automatic construction of qualitative models from physical specifications, and further research into selection of appropriate modeling viewpoints. For monitoring and diagnosis, plausible hypotheses are unified against observations to strengthen or refute the predicted behaviors. In MIMIC (Model Integration via Mesh Interpolation Coefficients), multiple hypothesized models of the system are tracked in parallel in order to reduce the 'missing model' problem. Each model begins as a qualitative model, and is unified with a priori quantitative knowledge and with the stream of incoming observational data. When the model/data unification yields a contradiction, the model is refuted. When there is no contradiction, the predictions of the model are progressively strengthened, for use in procedure planning and differential diagnosis. Only under a qualitative level of description can a finite set of models guarantee the complete coverage necessary for this performance. The results of this research are presented in several publications. Abstracts of these published papers are presented along with abtracts of papers representing work that was synergistic with the NASA grant but funded otherwise. These 28 papers include but are not limited to: 'Combined qualitative and numerical simulation with Q3'; 'Comparative analysis and qualitative integral representations'; 'Model-based monitoring of dynamic systems'; 'Numerical behavior envelopes for qualitative models'; 'Higher-order derivative constraints in qualitative simulation'; and 'Non-intersection of trajectories in qualitative phase space: a global constraint for qualitative simulation.'

A Novel Method to Verify Multilevel Computational Models of Biological Systems Using Multiscale Spatio-Temporal Meta Model Checking.

PubMed

Pârvu, Ovidiu; Gilbert, David

2016-01-01

Insights gained from multilevel computational models of biological systems can be translated into real-life applications only if the model correctness has been verified first. One of the most frequently employed in silico techniques for computational model verification is model checking. Traditional model checking approaches only consider the evolution of numeric values, such as concentrations, over time and are appropriate for computational models of small scale systems (e.g. intracellular networks). However for gaining a systems level understanding of how biological organisms function it is essential to consider more complex large scale biological systems (e.g. organs). Verifying computational models of such systems requires capturing both how numeric values and properties of (emergent) spatial structures (e.g. area of multicellular population) change over time and across multiple levels of organization, which are not considered by existing model checking approaches. To address this limitation we have developed a novel approximate probabilistic multiscale spatio-temporal meta model checking methodology for verifying multilevel computational models relative to specifications describing the desired/expected system behaviour. The methodology is generic and supports computational models encoded using various high-level modelling formalisms because it is defined relative to time series data and not the models used to generate it. In addition, the methodology can be automatically adapted to case study specific types of spatial structures and properties using the spatio-temporal meta model checking concept. To automate the computational model verification process we have implemented the model checking approach in the software tool Mule (http://mule.modelchecking.org). Its applicability is illustrated against four systems biology computational models previously published in the literature encoding the rat cardiovascular system dynamics, the uterine contractions of labour, the Xenopus laevis cell cycle and the acute inflammation of the gut and lung. Our methodology and software will enable computational biologists to efficiently develop reliable multilevel computational models of biological systems.

Leachate breakthrough mechanism and key pollutant indicator of municipal solid waste landfill barrier systems: Centrifuge and numerical modeling approach.

PubMed

Shu, Shi; Zhu, Wei; Wang, Shengwei; Ng, Charles Wang Wai; Chen, Yunmin; Chiu, Abraham Chung Fai

2018-01-15

Groundwater pollution by leachate leakage is one of the most common environmental hazards associated with municipal solid waste (MSW) landfill sites. However, landfill leachate contains a large variety of pollutants with widely different concentrations and biotoxicity. Thus, selecting leachate pollutant indicators and levels for identifying breakthrough of barrier systems are key factors in assessing their breakthrough times. This study investigated the transport behavior of leachate pollutants through landfill barrier systems using centrifuge tests and numerical modeling. The overall objective of this study is to investigate breakthrough mechanism to facilitate the establishment of a consistent pollutant threshold concentration for use as a groundwater pollution alert. The specific objective of the study is to identify which pollutant and breakthrough threshold concentration should be used as an indicator in the transport of multiple pollutants through a landfill barrier system. The threshold concentration from the Chinese groundwater quality standards was used in the analysis of the properties of leachates from many landfill sites in China. The time for the chemical oxygen demand (COD) to reach the breakthrough threshold concentration at the bottom of a 2m compacted clay liner was 1.51years according to centrifuge tests, and 1.81years according to numerical modeling. The COD breakthrough times for single and double composite liners were within the range of 16 and 36.58years. Of all the pollutants, COD was found to consistently reach the breakthrough threshold first. Therefore, COD can be selected as the key indicator for pollution alerts and used to assess the environmental risk posed by MSW landfill sites. Copyright © 2017. Published by Elsevier B.V.

Estimating turbidity current conditions from channel morphology: A Froude number approach

NASA Astrophysics Data System (ADS)

Sequeiros, Octavio E.

2012-04-01

There is a growing need across different disciplines to develop better predictive tools for flow conditions of density and turbidity currents. Apart from resorting to complex numerical modeling or expensive field measurements, little is known about how to estimate gravity flow parameters from scarce available data and how they relate to each other. This study presents a new method to estimate normal flow conditions of gravity flows from channel morphology based on an extensive data set of laboratory and field measurements. The compilation consists of 78 published works containing 1092 combined measurements of velocity and concentration of gravity flows dating as far back as the early 1950s. Because the available data do not span all ranges of the critical parameters, such as bottom slope, a validated Reynolds-averaged Navier-Stokes (RANS)κ-ɛnumerical model is used to cover the gaps. It is shown that gravity flows fall within a range of Froude numbers spanning 1 order of magnitude centered on unity, as opposed to rivers and open-channel flows which extend to a much wider range. It is also observed that the transition from subcritical to supercritical flow regime occurs around a slope of 1%, with a spread caused by parameters other than the bed slope, like friction and suspended sediment settling velocity. The method is based on a set of equations relating Froude number to bed slope, combined friction, suspended material, and other flow parameters. The applications range from quick estimations of gravity flow conditions to improved numerical modeling and back calculation of missing parameters. A real case scenario of turbidity current estimation from a submarine canyon off the Nigerian coast is provided as an example.

Predicting chemical degradation during storage from two successive concentration ratios: Theoretical investigation.

PubMed

Peleg, Micha; Normand, Mark D

2015-09-01

When a vitamin's, pigment's or other food component's chemical degradation follows a known fixed order kinetics, and its rate constant's temperature-dependence follows a two parameter model, then, at least theoretically, it is possible to extract these two parameters from two successive experimental concentration ratios determined during the food's non-isothermal storage. This requires numerical solution of two simultaneous equations, themselves the numerical solutions of two differential rate equations, with a program especially developed for the purpose. Once calculated, these parameters can be used to reconstruct the entire degradation curve for the particular temperature history and predict the degradation curves for other temperature histories. The concept and computation method were tested with simulated degradation under rising and/or falling oscillating temperature conditions, employing the exponential model to characterize the rate constant's temperature-dependence. In computer simulations, the method's predictions were robust against minor errors in the two concentration ratios. The program to do the calculations was posted as freeware on the Internet. The temperature profile can be entered as an algebraic expression that can include 'If' statements, or as an imported digitized time-temperature data file, to be converted into an Interpolating Function by the program. The numerical solution of the two simultaneous equations requires close initial guesses of the exponential model's parameters. Programs were devised to obtain these initial values by matching the two experimental concentration ratios with a generated degradation curve whose parameters can be varied manually with sliders on the screen. These programs too were made available as freeware on the Internet and were tested with published data on vitamin A. Copyright © 2015 Elsevier Ltd. All rights reserved.

Dynamic optimization of distributed biological systems using robust and efficient numerical techniques.

PubMed

Vilas, Carlos; Balsa-Canto, Eva; García, Maria-Sonia G; Banga, Julio R; Alonso, Antonio A

2012-07-02

Systems biology allows the analysis of biological systems behavior under different conditions through in silico experimentation. The possibility of perturbing biological systems in different manners calls for the design of perturbations to achieve particular goals. Examples would include, the design of a chemical stimulation to maximize the amplitude of a given cellular signal or to achieve a desired pattern in pattern formation systems, etc. Such design problems can be mathematically formulated as dynamic optimization problems which are particularly challenging when the system is described by partial differential equations.This work addresses the numerical solution of such dynamic optimization problems for spatially distributed biological systems. The usual nonlinear and large scale nature of the mathematical models related to this class of systems and the presence of constraints on the optimization problems, impose a number of difficulties, such as the presence of suboptimal solutions, which call for robust and efficient numerical techniques. Here, the use of a control vector parameterization approach combined with efficient and robust hybrid global optimization methods and a reduced order model methodology is proposed. The capabilities of this strategy are illustrated considering the solution of a two challenging problems: bacterial chemotaxis and the FitzHugh-Nagumo model. In the process of chemotaxis the objective was to efficiently compute the time-varying optimal concentration of chemotractant in one of the spatial boundaries in order to achieve predefined cell distribution profiles. Results are in agreement with those previously published in the literature. The FitzHugh-Nagumo problem is also efficiently solved and it illustrates very well how dynamic optimization may be used to force a system to evolve from an undesired to a desired pattern with a reduced number of actuators. The presented methodology can be used for the efficient dynamic optimization of generic distributed biological systems.

Community-deliverable exercise and anxiety in adults with arthritis and other rheumatic diseases: a protocol for a systematic review and meta-analysis of randomised controlled trials.

PubMed

Kelley, George A; Kelley, Kristi S; Callahan, Leigh F

2017-03-06

While anxiety is a major public health problem in adults with arthritis and other rheumatic diseases (AORD), the effects of exercise on anxiety in adults are not well established despite numerous studies on this topic. The purpose of this study is to conduct a systematic review with an aggregate data meta-analysis to determine the effects of community-deliverable exercise interventions (aerobic, strength training or both) on anxiety in adults with AORD. Randomised controlled exercise intervention trials ≥4 weeks and published in any language up to 31 December 2016 will be included. Studies will be retrieved by searching 8 electronic databases, cross-referencing and expert review. Dual selection and abstraction of data will occur. The primary outcome will be changes in anxiety. Risk of bias will be assessed using the Cochrane risk of bias assessment instrument while confidence in the cumulative evidence will be assessed using the Grading of Recommendations Assessment, Development and Evaluation (GRADE) instrument. Standardised effect sizes for anxiety will be calculated from each study and then pooled using the inverse variance heterogeneity (IVhet) model. Meta-regression based on the IVhet model will be used to examine the relationship between changes in anxiety and selected covariates. The results of this study will be presented at a professional conference and published in a peer-reviewed journal. CRD42016048728. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/.

An efficient assisted history matching and uncertainty quantification workflow using Gaussian processes proxy models and variogram based sensitivity analysis: GP-VARS

NASA Astrophysics Data System (ADS)

Rana, Sachin; Ertekin, Turgay; King, Gregory R.

2018-05-01

Reservoir history matching is frequently viewed as an optimization problem which involves minimizing misfit between simulated and observed data. Many gradient and evolutionary strategy based optimization algorithms have been proposed to solve this problem which typically require a large number of numerical simulations to find feasible solutions. Therefore, a new methodology referred to as GP-VARS is proposed in this study which uses forward and inverse Gaussian processes (GP) based proxy models combined with a novel application of variogram analysis of response surface (VARS) based sensitivity analysis to efficiently solve high dimensional history matching problems. Empirical Bayes approach is proposed to optimally train GP proxy models for any given data. The history matching solutions are found via Bayesian optimization (BO) on forward GP models and via predictions of inverse GP model in an iterative manner. An uncertainty quantification method using MCMC sampling in conjunction with GP model is also presented to obtain a probabilistic estimate of reservoir properties and estimated ultimate recovery (EUR). An application of the proposed GP-VARS methodology on PUNQ-S3 reservoir is presented in which it is shown that GP-VARS provides history match solutions in approximately four times less numerical simulations as compared to the differential evolution (DE) algorithm. Furthermore, a comparison of uncertainty quantification results obtained by GP-VARS, EnKF and other previously published methods shows that the P50 estimate of oil EUR obtained by GP-VARS is in close agreement to the true values for the PUNQ-S3 reservoir.

Repeated applications of a transdermal patch: analytical solution and optimal control of the delivery rate.

PubMed

Simon, L

2007-10-01

The integral transform technique was implemented to solve a mathematical model developed for percutaneous drug absorption. The model included repeated application and removal of a patch from the skin. Fick's second law of diffusion was used to study the transport of a medicinal agent through the vehicle and subsequent penetration into the stratum corneum. Eigenmodes and eigenvalues were computed and introduced into an inversion formula to estimate the delivery rate and the amount of drug in the vehicle and the skin. A dynamic programming algorithm calculated the optimal doses necessary to achieve a desired transdermal flux. The analytical method predicted profiles that were in close agreement with published numerical solutions and provided an automated strategy to perform therapeutic drug monitoring and control.

Printing Technologies for Medical Applications.

PubMed

Shafiee, Ashkan; Atala, Anthony

2016-03-01

Over the past 15 years, printers have been increasingly utilized for biomedical applications in various areas of medicine and tissue engineering. This review discusses the current and future applications of 3D bioprinting. Several 3D printing tools with broad applications from surgical planning to 3D models are being created, such as liver replicas and intermediate splints. Numerous researchers are exploring this technique to pattern cells or fabricate several different tissues and organs, such as blood vessels or cardiac patches. Current investigations in bioprinting applications are yielding further advances. As one of the fastest areas of industry expansion, 3D additive manufacturing will change techniques across biomedical applications, from research and testing models to surgical planning, device manufacturing, and tissue or organ replacement. Copyright © 2016. Published by Elsevier Ltd.

Standard deviation analysis of the mastoid fossa temperature differential reading: a potential model for objective chiropractic assessment.

PubMed

Hart, John

2011-03-01

This study describes a model for statistically analyzing follow-up numeric-based chiropractic spinal assessments for an individual patient based on his or her own baseline. Ten mastoid fossa temperature differential readings (MFTD) obtained from a chiropractic patient were used in the study. The first eight readings served as baseline and were compared to post-adjustment readings. One of the two post-adjustment MFTD readings fell outside two standard deviations of the baseline mean and therefore theoretically represents improvement according to pattern analysis theory. This study showed how standard deviation analysis may be used to identify future outliers for an individual patient based on his or her own baseline data. Copyright © 2011 National University of Health Sciences. Published by Elsevier Inc. All rights reserved.

Research in Theoretical Particle Physics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ralston, John P.

This document is the final report on activity of the University of Kansas theory group supported under DOE Grant Number DE-FG02-04ER14308, ending April 30, 3013. The report covers the most recent three year period period May 1, 2010-April 30, 2013. Faculty supported by the grant during the period were Danny Marfatia (co-I), Douglas McKay (emeritus) and John Ralston (PI). The group's research topics and accomplishments covered numerous different topics subsumed under the {\\it the Energy Frontier, the Intensity Frontier}, and {\\it the Cosmic Frontier}. Many theoretical and experimental results related to the Standard Model and models of new physics weremore » published during the reporting period. The group's research emphasis has been on challenging and confronting {\\it Anything that is Observable} about the physical Universe.« less

Improved Gaussian Beam-Scattering Algorithm

NASA Technical Reports Server (NTRS)

Lock, James A.

1995-01-01

The localized model of the beam-shape coefficients for Gaussian beam-scattering theory by a spherical particle provides a great simplification in the numerical implementation of the theory. We derive an alternative form for the localized coefficients that is more convenient for computer computations and that provides physical insight into the details of the scattering process. We construct a FORTRAN program for Gaussian beam scattering with the localized model and compare its computer run time on a personal computer with that of a traditional Mie scattering program and with three other published methods for computing Gaussian beam scattering. We show that the analytical form of the beam-shape coefficients makes evident the fact that the excitation rate of morphology-dependent resonances is greatly enhanced for far off-axis incidence of the Gaussian beam.

Estimating non-isothermal bacterial growth in foods from isothermal experimental data.

PubMed

Corradini, M G; Peleg, M

2005-01-01

To develop a mathematical method to estimate non-isothermal microbial growth curves in foods from experiments performed under isothermal conditions and demonstrate the method's applicability with published growth data. Published isothermal growth curves of Pseudomonas spp. in refrigerated fish at 0-8 degrees C and Escherichia coli 1952 in a nutritional broth at 27.6-36 degrees C were fitted with two different three-parameter 'primary models' and the temperature dependence of their parameters was fitted by ad hoc empirical 'secondary models'. These were used to generate non-isothermal growth curves by solving, numerically, a differential equation derived on the premise that the momentary non-isothermal growth rate is the isothermal rate at the momentary temperature, at a time that corresponds to the momentary growth level of the population. The predicted non-isothermal growth curves were in agreement with the reported experimental ones and, as expected, the quality of the predictions did not depend on the 'primary model' chosen for the calculation. A common type of sigmoid growth curve can be adequately described by three-parameter 'primary models'. At least in the two systems examined, these could be used to predict growth patterns under a variety of continuous and discontinuous non-isothermal temperature profiles. The described mathematical method whenever validated experimentally will enable the simulation of the microbial quality of stored and transported foods under a large variety of existing or contemplated commercial temperature histories.

Digital data sets that describe aquifer characteristics of the alluvial and terrace deposits along the North Canadian River from Oklahoma City to Eufaula Lake in east-central Oklahoma

USGS Publications Warehouse

Adams, G.P.; Runkle, Donna; Rea, Alan; Becker, C.J.

1997-01-01

ARC/INFO export and nonproprietary format files This diskette contains digitized aquifer boundaries and maps of of hydraulic conductivity, recharge, and ground-water level elevation contours for the alluvial and terrace deposits along the North Canadian River from Oklahoma City to Eufaula Lake in east-central Oklahoma. Ground water in 710 square miles of Quaternary-age alluvial and terrace deposits along the North Canadian River is an important source of water for irrigation, industrial, municipal, stock, and domestic supplies. The aquifer, composed of alluvial and terrace deposits, consists of sand, silt, clay, and gravel. The aquifer is underlain and in hydraulic connection with the upper zone of the Permian-age Garber-Wellington aquifer and the Pennsylvanian-age Ada-Vamoosa aquifer. Most of the lines in the four digital data sets were digitized from a published ground-water modeling report but portions of the aquifer boundary data set was extracted from published digital geologic data sets. Ground-water flow models are numerical representations that simplify and aggregate natural systems. Models are not unique; different combinations of aquifer characteristics may produce similar results. Therefore, values of hydraulic conductivity and recharge used in the model and presented in this data set are not precise, but are within a reasonable range when compared to independently collected data.

Novel applications of multitask learning and multiple output regression to multiple genetic trait prediction.

PubMed

He, Dan; Kuhn, David; Parida, Laxmi

2016-06-15

Given a set of biallelic molecular markers, such as SNPs, with genotype values encoded numerically on a collection of plant, animal or human samples, the goal of genetic trait prediction is to predict the quantitative trait values by simultaneously modeling all marker effects. Genetic trait prediction is usually represented as linear regression models. In many cases, for the same set of samples and markers, multiple traits are observed. Some of these traits might be correlated with each other. Therefore, modeling all the multiple traits together may improve the prediction accuracy. In this work, we view the multitrait prediction problem from a machine learning angle: as either a multitask learning problem or a multiple output regression problem, depending on whether different traits share the same genotype matrix or not. We then adapted multitask learning algorithms and multiple output regression algorithms to solve the multitrait prediction problem. We proposed a few strategies to improve the least square error of the prediction from these algorithms. Our experiments show that modeling multiple traits together could improve the prediction accuracy for correlated traits. The programs we used are either public or directly from the referred authors, such as MALSAR (http://www.public.asu.edu/~jye02/Software/MALSAR/) package. The Avocado data set has not been published yet and is available upon request. dhe@us.ibm.com. © The Author 2016. Published by Oxford University Press.

Mutual coupling effects in antenna arrays, volume 1

NASA Technical Reports Server (NTRS)

Collin, R. E.

1986-01-01

Mutual coupling between rectangular apertures in a finite antenna array, in an infinite ground plane, is analyzed using the vector potential approach. The method of moments is used to solve the equations that result from setting the tangential magnetic fields across each aperture equal. The approximation uses a set of vector potential model functions to solve for equivalent magnetic currents. A computer program was written to carry out this analysis and the resulting currents were used to determine the co- and cross-polarized far zone radiation patterns. Numerical results for various arrays using several modes in the approximation are presented. Results for one and two aperture arrays are compared against published data to check on the agreement of this model with previous work. Computer derived results are also compared against experimental results to test the accuracy of the model. These tests of the accuracy of the program showed that it yields valid data.

PMICALC: an R code-based software for estimating post-mortem interval (PMI) compatible with Windows, Mac and Linux operating systems.

PubMed

Muñoz-Barús, José I; Rodríguez-Calvo, María Sol; Suárez-Peñaranda, José M; Vieira, Duarte N; Cadarso-Suárez, Carmen; Febrero-Bande, Manuel

2010-01-30

In legal medicine the correct determination of the time of death is of utmost importance. Recent advances in estimating post-mortem interval (PMI) have made use of vitreous humour chemistry in conjunction with Linear Regression, but the results are questionable. In this paper we present PMICALC, an R code-based freeware package which estimates PMI in cadavers of recent death by measuring the concentrations of potassium ([K+]), hypoxanthine ([Hx]) and urea ([U]) in the vitreous humor using two different regression models: Additive Models (AM) and Support Vector Machine (SVM), which offer more flexibility than the previously used Linear Regression. The results from both models are better than those published to date and can give numerical expression of PMI with confidence intervals and graphic support within 20 min. The program also takes into account the cause of death. 2009 Elsevier Ireland Ltd. All rights reserved.

Stabilization strategies of a general nonlinear car-following model with varying reaction-time delay of the drivers.

PubMed

Li, Shukai; Yang, Lixing; Gao, Ziyou; Li, Keping

2014-11-01

In this paper, the stabilization strategies of a general nonlinear car-following model with reaction-time delay of the drivers are investigated. The reaction-time delay of the driver is time varying and bounded. By using the Lyapunov stability theory, the sufficient condition for the existence of the state feedback control strategy for the stability of the car-following model is given in the form of linear matrix inequality, under which the traffic jam can be well suppressed with respect to the varying reaction-time delay. Moreover, by considering the external disturbance for the running cars, the robust state feedback control strategy is designed, which ensures robust stability and a smaller prescribed H∞ disturbance attenuation level for the traffic flow. Numerical examples are given to illustrate the effectiveness of the proposed methods. Copyright © 2014 ISA. Published by Elsevier Ltd. All rights reserved.

The construction of life prediction models for the design of Stirling engine heater components

NASA Technical Reports Server (NTRS)

Petrovich, A.; Bright, A.; Cronin, M.; Arnold, S.

1983-01-01

The service life of Stirling-engine heater structures of Fe-based high-temperature alloys is predicted using a numerical model based on a linear-damage approach and published test data (engine test data for a Co-based alloy and tensile-test results for both the Co-based and the Fe-based alloys). The operating principle of the automotive Stirling engine is reviewed; the economic and technical factors affecting the choice of heater material are surveyed; the test results are summarized in tables and graphs; the engine environment and automotive duty cycle are characterized; and the modeling procedure is explained. It is found that the statistical scatter of the fatigue properties of the heater components needs to be reduced (by decreasing the porosity of the cast material or employing wrought material in fatigue-prone locations) before the accuracy of life predictions can be improved.

Multiphysics Simulation of Welding-Arc and Nozzle-Arc System: Mathematical-Model, Solution-Methodology and Validation

NASA Astrophysics Data System (ADS)

Pawar, Sumedh; Sharma, Atul

2018-01-01

This work presents mathematical model and solution methodology for a multiphysics engineering problem on arc formation during welding and inside a nozzle. A general-purpose commercial CFD solver ANSYS FLUENT 13.0.0 is used in this work. Arc formation involves strongly coupled gas dynamics and electro-dynamics, simulated by solution of coupled Navier-Stoke equations, Maxwell's equations and radiation heat-transfer equation. Validation of the present numerical methodology is demonstrated with an excellent agreement with the published results. The developed mathematical model and the user defined functions (UDFs) are independent of the geometry and are applicable to any system that involves arc-formation, in 2D axisymmetric coordinates system. The high-pressure flow of SF6 gas in the nozzle-arc system resembles arc chamber of SF6 gas circuit breaker; thus, this methodology can be extended to simulate arcing phenomenon during current interruption.

Computational fluid dynamics modelling in cardiovascular medicine.

PubMed

Morris, Paul D; Narracott, Andrew; von Tengg-Kobligk, Hendrik; Silva Soto, Daniel Alejandro; Hsiao, Sarah; Lungu, Angela; Evans, Paul; Bressloff, Neil W; Lawford, Patricia V; Hose, D Rodney; Gunn, Julian P

2016-01-01

This paper reviews the methods, benefits and challenges associated with the adoption and translation of computational fluid dynamics (CFD) modelling within cardiovascular medicine. CFD, a specialist area of mathematics and a branch of fluid mechanics, is used routinely in a diverse range of safety-critical engineering systems, which increasingly is being applied to the cardiovascular system. By facilitating rapid, economical, low-risk prototyping, CFD modelling has already revolutionised research and development of devices such as stents, valve prostheses, and ventricular assist devices. Combined with cardiovascular imaging, CFD simulation enables detailed characterisation of complex physiological pressure and flow fields and the computation of metrics which cannot be directly measured, for example, wall shear stress. CFD models are now being translated into clinical tools for physicians to use across the spectrum of coronary, valvular, congenital, myocardial and peripheral vascular diseases. CFD modelling is apposite for minimally-invasive patient assessment. Patient-specific (incorporating data unique to the individual) and multi-scale (combining models of different length- and time-scales) modelling enables individualised risk prediction and virtual treatment planning. This represents a significant departure from traditional dependence upon registry-based, population-averaged data. Model integration is progressively moving towards 'digital patient' or 'virtual physiological human' representations. When combined with population-scale numerical models, these models have the potential to reduce the cost, time and risk associated with clinical trials. The adoption of CFD modelling signals a new era in cardiovascular medicine. While potentially highly beneficial, a number of academic and commercial groups are addressing the associated methodological, regulatory, education- and service-related challenges. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/

Modeling of chromosome intermingling by partially overlapping uniform random polygons.

PubMed

Blackstone, T; Scharein, R; Borgo, B; Varela, R; Diao, Y; Arsuaga, J

2011-03-01

During the early phase of the cell cycle the eukaryotic genome is organized into chromosome territories. The geometry of the interface between any two chromosomes remains a matter of debate and may have important functional consequences. The Interchromosomal Network model (introduced by Branco and Pombo) proposes that territories intermingle along their periphery. In order to partially quantify this concept we here investigate the probability that two chromosomes form an unsplittable link. We use the uniform random polygon as a crude model for chromosome territories and we model the interchromosomal network as the common spatial region of two overlapping uniform random polygons. This simple model allows us to derive some rigorous mathematical results as well as to perform computer simulations easily. We find that the probability that one uniform random polygon of length n that partially overlaps a fixed polygon is bounded below by 1 − O(1/√n). We use numerical simulations to estimate the dependence of the linking probability of two uniform random polygons (of lengths n and m, respectively) on the amount of overlapping. The degree of overlapping is parametrized by a parameter [Formula: see text] such that [Formula: see text] indicates no overlapping and [Formula: see text] indicates total overlapping. We propose that this dependence relation may be modeled as f (ε, m, n) = [Formula: see text]. Numerical evidence shows that this model works well when [Formula: see text] is relatively large (ε ≥ 0.5). We then use these results to model the data published by Branco and Pombo and observe that for the amount of overlapping observed experimentally the URPs have a non-zero probability of forming an unsplittable link.

Customization of Curriculum Materials in Science: Motives, Challenges, and Opportunities

ERIC Educational Resources Information Center

Romine, William L.; Banerjee, Tanvi

2012-01-01

Exemplary science instructors use inquiry to tailor content to student's learning needs; traditional textbooks treat science as a set of facts and a rigid curriculum. Publishers now allow instructors to compile pieces of published and/or self-authored text to make custom textbooks. This brings numerous advantages, including the ability to produce…

A delta-rule model of numerical and non-numerical order processing.

PubMed

Verguts, Tom; Van Opstal, Filip

2014-06-01

Numerical and non-numerical order processing share empirical characteristics (distance effect and semantic congruity), but there are also important differences (in size effect and end effect). At the same time, models and theories of numerical and non-numerical order processing developed largely separately. Currently, we combine insights from 2 earlier models to integrate them in a common framework. We argue that the same learning principle underlies numerical and non-numerical orders, but that environmental features determine the empirical differences. Implications for current theories on order processing are pointed out. PsycINFO Database Record (c) 2014 APA, all rights reserved.

FASOR - A second generation shell of revolution code

NASA Technical Reports Server (NTRS)

Cohen, G. A.

1978-01-01

An integrated computer program entitled Field Analysis of Shells of Revolution (FASOR) currently under development for NASA is described. When completed, this code will treat prebuckling, buckling, initial postbuckling and vibrations under axisymmetric static loads as well as linear response and bifurcation under asymmetric static loads. Although these modes of response are treated by existing programs, FASOR extends the class of problems treated to include general anisotropy and transverse shear deformations of stiffened laminated shells. At the same time, a primary goal is to develop a program which is free of the usual problems of modeling, numerical convergence and ill-conditioning, laborious problem setup, limitations on problem size and interpretation of output. The field method is briefly described, the shell differential equations are cast in a suitable form for solution by this method and essential aspects of the input format are presented. Numerical results are given for both unstiffened and stiffened anisotropic cylindrical shells and compared with previously published analytical solutions.

Spatial Linear Instability of Confluent Wake/Boundary Layers

NASA Technical Reports Server (NTRS)

Liou, William W.; Liu, Feng-Jun; Rumsey, C. L. (Technical Monitor)

2001-01-01

The spatial linear instability of incompressible confluent wake/boundary layers is analyzed. The flow model adopted is a superposition of the Blasius boundary layer and a wake located above the boundary layer. The Orr-Sommerfeld equation is solved using a global numerical method for the resulting eigenvalue problem. The numerical procedure is validated by comparing the present solutions for the instability of the Blasius boundary layer and for the instability of a wake with published results. For the confluent wake/boundary layers, modes associated with the boundary layer and the wake, respectively, are identified. The boundary layer mode is found amplified as the wake approaches the wall. On the other hand, the modes associated with the wake, including a symmetric mode and an antisymmetric mode, are stabilized by the reduced distance between the wall and the wake. An unstable mode switching at low frequency is observed where the antisymmetric mode becomes more unstable than the symmetric mode when the wake velocity defect is high.

Simulation of wind turbine wakes using the actuator line technique.

PubMed

Sørensen, Jens N; Mikkelsen, Robert F; Henningson, Dan S; Ivanell, Stefan; Sarmast, Sasan; Andersen, Søren J

2015-02-28

The actuator line technique was introduced as a numerical tool to be employed in combination with large eddy simulations to enable the study of wakes and wake interaction in wind farms. The technique is today largely used for studying basic features of wakes as well as for making performance predictions of wind farms. In this paper, we give a short introduction to the wake problem and the actuator line methodology and present a study in which the technique is employed to determine the near-wake properties of wind turbines. The presented results include a comparison of experimental results of the wake characteristics of the flow around a three-bladed model wind turbine, the development of a simple analytical formula for determining the near-wake length behind a wind turbine and a detailed investigation of wake structures based on proper orthogonal decomposition analysis of numerically generated snapshots of the wake. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

Discontinuous finite element method for vector radiative transfer

NASA Astrophysics Data System (ADS)

Wang, Cun-Hai; Yi, Hong-Liang; Tan, He-Ping

2017-03-01

The discontinuous finite element method (DFEM) is applied to solve the vector radiative transfer in participating media. The derivation in a discrete form of the vector radiation governing equations is presented, in which the angular space is discretized by the discrete-ordinates approach with a local refined modification, and the spatial domain is discretized into finite non-overlapped discontinuous elements. The elements in the whole solution domain are connected by modelling the boundary numerical flux between adjacent elements, which makes the DFEM numerically stable for solving radiative transfer equations. Several various problems of vector radiative transfer are tested to verify the performance of the developed DFEM, including vector radiative transfer in a one-dimensional parallel slab containing a Mie/Rayleigh/strong forward scattering medium and a two-dimensional square medium. The fact that DFEM results agree very well with the benchmark solutions in published references shows that the developed DFEM in this paper is accurate and effective for solving vector radiative transfer problems.

Transient well flow in leaky multiple-aquifer systems

NASA Astrophysics Data System (ADS)

Hemker, C. J.

1985-10-01

A previously developed eigenvalue analysis approach to groundwater flow in leaky multiple aquifers is used to derive exact solutions for transient well flow problems in leaky and confined systems comprising any number of aquifers. Equations are presented for the drawdown distribution in systems of infinite extent, caused by wells penetrating one or more of the aquifers completely and discharging each layer at a constant rate. Since the solution obtained may be regarded as a combined analytical-numerical technique, a type of one-dimensional modelling can be applied to find approximate solutions for several complicating conditions. Numerical evaluations are presented as time-drawdown curves and include effects of storage in the aquitard, unconfined conditions, partially penetrating wells and stratified aquifers. The outcome of calculations for relatively simple systems compares very well with published corresponding results. The proposed multilayer solution can be a valuable tool in aquifer test evaluation, as it provides the analytical expression required to enable the application of existing computer methods to the determination of aquifer characteristics.

Meta‐analysis using individual participant data: one‐stage and two‐stage approaches, and why they may differ

PubMed Central

Ensor, Joie; Riley, Richard D.

2016-01-01

Meta‐analysis using individual participant data (IPD) obtains and synthesises the raw, participant‐level data from a set of relevant studies. The IPD approach is becoming an increasingly popular tool as an alternative to traditional aggregate data meta‐analysis, especially as it avoids reliance on published results and provides an opportunity to investigate individual‐level interactions, such as treatment‐effect modifiers. There are two statistical approaches for conducting an IPD meta‐analysis: one‐stage and two‐stage. The one‐stage approach analyses the IPD from all studies simultaneously, for example, in a hierarchical regression model with random effects. The two‐stage approach derives aggregate data (such as effect estimates) in each study separately and then combines these in a traditional meta‐analysis model. There have been numerous comparisons of the one‐stage and two‐stage approaches via theoretical consideration, simulation and empirical examples, yet there remains confusion regarding when each approach should be adopted, and indeed why they may differ. In this tutorial paper, we outline the key statistical methods for one‐stage and two‐stage IPD meta‐analyses, and provide 10 key reasons why they may produce different summary results. We explain that most differences arise because of different modelling assumptions, rather than the choice of one‐stage or two‐stage itself. We illustrate the concepts with recently published IPD meta‐analyses, summarise key statistical software and provide recommendations for future IPD meta‐analyses. © 2016 The Authors. Statistics in Medicine published by John Wiley & Sons Ltd. PMID:27747915

Salt movements and faulting of the overburden - can numerical modeling predict the fault patterns above salt structures?

NASA Astrophysics Data System (ADS)

Clausen, O. R.; Egholm, D. L.; Wesenberg, R.

2012-04-01

Salt deformation has been the topic of numerous studies through the 20th century and up until present because of the close relation between commercial hydrocarbons and salt structure provinces of the world (Hudec & Jackson, 2007). The fault distribution in sediments above salt structures influences among other things the productivity due to the segmentation of the reservoir (Stewart 2006). 3D seismic data above salt structures can map such fault patterns in great detail and studies have shown that a variety of fault patterns exists. Yet, most patterns fall between two end members: concentric and radiating fault patterns. Here we use a modified version of the numerical spring-slider model introduced by Malthe-Sørenssen et al.(1998a) for simulating the emergence of small scale faults and fractures above a rising salt structure. The three-dimensional spring-slider model enables us to control the rheology of the deforming overburden, the mechanical coupling between the overburden and the underlying salt, as well as the kinematics of the moving salt structure. In this presentation, we demonstrate how the horizontal component on the salt motion influences the fracture patterns within the overburden. The modeling shows that purely vertical movement of the salt introduces a mesh of concentric normal faults in the overburden, and that the frequency of radiating faults increases with the amount of lateral movements across the salt-overburden interface. The two end-member fault patterns (concentric vs. radiating) can thus be linked to two different styles of salt movement: i) the vertical rising of a salt indenter and ii) the inflation of a 'salt-balloon' beneath the deformed strata. The results are in accordance with published analogue and theoretical models, as well as natural systems, and the model may - when used appropriately - provide new insight into how the internal dynamics of the salt in a structure controls the generation of fault patterns above the structure. The model is thus an important contribution to the understanding of small-scale faults, which may be unresolved by seismic data when the hydrocarbon production from reservoirs located above salt structures is optimized.

Building an Open-source Simulation Platform of Acoustic Radiation Force-based Breast Elastography

PubMed Central

Wang, Yu; Peng, Bo; Jiang, Jingfeng

2017-01-01

Ultrasound-based elastography including strain elastography (SE), acoustic radiation force Impulse (ARFI) imaging, point shear wave elastography (pSWE) and supersonic shear imaging (SSI) have been used to differentiate breast tumors among other clinical applications. The objective of this study is to extend a previously published virtual simulation platform built for ultrasound quasi-static breast elastography toward acoustic radiation force-based breast elastography. Consequently, the extended virtual breast elastography simulation platform can be used to validate image pixels with known underlying soft tissue properties (i.e. “ground truth”) in complex, heterogeneous media, enhancing confidence in elastographic image interpretations. The proposed virtual breast elastography system inherited four key components from the previously published virtual simulation platform: an ultrasound simulator (Field II), a mesh generator (Tetgen), a finite element solver (FEBio) and a visualization and data processing package (VTK). Using a simple message passing mechanism, functionalities have now been extended to acoustic radiation force-based elastography simulations. Examples involving three different numerical breast models with increasing complexity – one uniform model, one simple inclusion model and one virtual complex breast model derived from magnetic resonance imaging data, were used to demonstrate capabilities of this extended virtual platform. Overall, simulation results were compared with the published results. In the uniform model, the estimated shear wave speed (SWS) values were within 4% compared to the predetermined SWS values. In the simple inclusion and the complex breast models, SWS values of all hard inclusions in soft backgrounds were slightly underestimated, similar to what has been reported. The elastic contrast values and visual observation show that ARFI images have higher spatial resolution, while SSI images can provide higher inclusion-to-background contrast. In summary, our initial results were consistent with our expectations and what have been reported in the literature. The proposed (open-source) simulation platform can serve as a single gateway to perform many elastographic simulations in a transparent manner, thereby promoting collaborative developments. PMID:28075330

Building an open-source simulation platform of acoustic radiation force-based breast elastography

NASA Astrophysics Data System (ADS)

Wang, Yu; Peng, Bo; Jiang, Jingfeng

2017-03-01

Ultrasound-based elastography including strain elastography, acoustic radiation force impulse (ARFI) imaging, point shear wave elastography and supersonic shear imaging (SSI) have been used to differentiate breast tumors among other clinical applications. The objective of this study is to extend a previously published virtual simulation platform built for ultrasound quasi-static breast elastography toward acoustic radiation force-based breast elastography. Consequently, the extended virtual breast elastography simulation platform can be used to validate image pixels with known underlying soft tissue properties (i.e. ‘ground truth’) in complex, heterogeneous media, enhancing confidence in elastographic image interpretations. The proposed virtual breast elastography system inherited four key components from the previously published virtual simulation platform: an ultrasound simulator (Field II), a mesh generator (Tetgen), a finite element solver (FEBio) and a visualization and data processing package (VTK). Using a simple message passing mechanism, functionalities have now been extended to acoustic radiation force-based elastography simulations. Examples involving three different numerical breast models with increasing complexity—one uniform model, one simple inclusion model and one virtual complex breast model derived from magnetic resonance imaging data, were used to demonstrate capabilities of this extended virtual platform. Overall, simulation results were compared with the published results. In the uniform model, the estimated shear wave speed (SWS) values were within 4% compared to the predetermined SWS values. In the simple inclusion and the complex breast models, SWS values of all hard inclusions in soft backgrounds were slightly underestimated, similar to what has been reported. The elastic contrast values and visual observation show that ARFI images have higher spatial resolution, while SSI images can provide higher inclusion-to-background contrast. In summary, our initial results were consistent with our expectations and what have been reported in the literature. The proposed (open-source) simulation platform can serve as a single gateway to perform many elastographic simulations in a transparent manner, thereby promoting collaborative developments.

Zdeněk Kopal: Numerical Analyst

NASA Astrophysics Data System (ADS)

Křížek, M.

2015-07-01

We give a brief overview of Zdeněk Kopal's life, his activities in the Czech Astronomical Society, his collaboration with Vladimír Vand, and his studies at Charles University, Cambridge, Harvard, and MIT. Then we survey Kopal's professional life. He published 26 monographs and 20 conference proceedings. We will concentrate on Kopal's extensive monograph Numerical Analysis (1955, 1961) that is widely accepted to be the first comprehensive textbook on numerical methods. It describes, for instance, methods for polynomial interpolation, numerical differentiation and integration, numerical solution of ordinary differential equations with initial or boundary conditions, and numerical solution of integral and integro-differential equations. Special emphasis will be laid on error analysis. Kopal himself applied numerical methods to celestial mechanics, in particular to the N-body problem. He also used Fourier analysis to investigate light curves of close binaries to discover their properties. This is, in fact, a problem from mathematical analysis.

Relations of different types of numerical magnitude representations to each other and to mathematics achievement.

PubMed

Fazio, Lisa K; Bailey, Drew H; Thompson, Clarissa A; Siegler, Robert S

2014-07-01

We examined relations between symbolic and non-symbolic numerical magnitude representations, between whole number and fraction representations, and between these representations and overall mathematics achievement in fifth graders. Fraction and whole number symbolic and non-symbolic numerical magnitude understandings were measured using both magnitude comparison and number line estimation tasks. After controlling for non-mathematical cognitive proficiency, both symbolic and non-symbolic numerical magnitude understandings were uniquely related to mathematics achievement, but the relation was much stronger for symbolic numbers. A meta-analysis of 19 published studies indicated that relations between non-symbolic numerical magnitude knowledge and mathematics achievement are present but tend to be weak, especially beyond 6 years of age. Copyright © 2014 Elsevier Inc. All rights reserved.

Francis Perrin's 1939 Analysis of Uranium Criticality

NASA Astrophysics Data System (ADS)

Reed, Cameron

2012-03-01

In May 1939, French physicist Francis Perrin published the first numerical estimate of the fast-neutron critical mass of a uranium compound. While his estimate of about 40 metric tons (12 tons if tamped) pertained to uranium oxide of natural isotopic composition as opposed to the enriched uranium that would be required for a nuclear weapon, it is interesting to examine Perrin's physics and to explore the subsequent impact of his paper. In this presentation I will discuss Perrin's model, the likely provenance of his parameter values, and how his work compared to the approach taken by Robert Serber in his 1943 Los Alamos Primer.

Stratospheric chlorine injection by volcanic eruptions - HCl scavenging and implications for ozone

NASA Technical Reports Server (NTRS)

Tabazadeh, A.; Turco, R. P.

1993-01-01

Because the output of volatile chlorine during a major volcanic event can greatly exceed the annual anthropogenic emissions of chlorine to the atmosphere, the fate of volcanic chlorine must be known. Although numerous observations have shown that volcanoes do not significantly contribute to the stratospheric chlorine burden, no quantitative explanation has been published. Hydrogen chloride (HCl) scavenging processes during the early phases of a volcanic eruption are discussed. A plume dynamics and thermodynamics model is used to show that HCl removal in condensed supercooled water can reduce HCl vapor concentrations by up to four orders of magnitude, preventing substantial stratospheric chlorine injection.

Corrigendum to "Onset of η-nuclear binding in a pionless EFT approach" [Phys. Lett. B 771 (2017) 297-302

NASA Astrophysics Data System (ADS)

Barnea, N.; Bazak, B.; Friedman, E.; Gal, A.

2017-12-01

A three-body force acting between the η-meson and two nucleons was overlooked inadvertently in the model description and discussion in the published version of our paper "Onset of η-nuclear binding in a pionless EFT approach" [Phys. Lett. B 771 (2017) 297-302] while present in the actual numerical calculations. The stated conclusion that a stabilizing ηNN contact term was not needed is therefore incorrect. Such a three-body force, associated with a new low energy constant dηNNΛ, must be introduced at leading order to stabilize η-nucleus systems.

Glyconanoparticles: types, synthesis and applications in glycoscience, biomedicine and material science.

PubMed

de la Fuente, Jesús M; Penadés, Soledad

2006-04-01

Nanoparticles are the subject of numerous papers and reports and are full of promises for electronic, optical, magnetic and biomedical applications. Although metallic nanoparticles have been functionalized with peptides, proteins and DNA during the last 20 years, carbohydrates have not been used with this purpose until 2001. Since the first synthesis of gold nanoparticles functionalized with carbohydrates (glyconanoparticles) was reported, the number of published articles has considerably increased. This article reviews progress in the development of nanoparticles functionalized with biological relevant oligosaccharides. The glyconanoparticles constitute a good bio-mimetic model of carbohydrate presentation at the cell surface, and maybe, excellent tools for Glycobiology, Biomedicine and Material Science investigations.

1DTempPro: analyzing temperature profiles for groundwater/surface-water exchange.

PubMed

Voytek, Emily B; Drenkelfuss, Anja; Day-Lewis, Frederick D; Healy, Richard; Lane, John W; Werkema, Dale

2014-01-01

A new computer program, 1DTempPro, is presented for the analysis of vertical one-dimensional (1D) temperature profiles under saturated flow conditions. 1DTempPro is a graphical user interface to the U.S. Geological Survey code Variably Saturated 2-Dimensional Heat Transport (VS2DH), which numerically solves the flow and heat-transport equations. Pre- and postprocessor features allow the user to calibrate VS2DH models to estimate vertical groundwater/surface-water exchange and also hydraulic conductivity for cases where hydraulic head is known. Published 2013. This article is a U.S. Government work and is in the public domain in the USA.

Iontophoretic transdermal drug delivery: a multi-layered approach.

PubMed

Pontrelli, Giuseppe; Lauricella, Marco; Ferreira, José A; Pena, Gonçalo

2017-12-11

We present a multi-layer mathematical model to describe the transdermal drug release from an iontophoretic system. The Nernst-Planck equation describes the basic convection-diffusion process, with the electric potential obtained by solving the Laplace's equation. These equations are complemented with suitable interface and boundary conditions in a multi-domain. The stability of the mathematical problem is discussed in different scenarios and a finite-difference method is used to solve the coupled system. Numerical experiments are included to illustrate the drug dynamics under different conditions. © The authors 2016. Published by Oxford University Press on behalf of the Institute of Mathematics and its Applications. All rights reserved.

Distributed-observer-based cooperative control for synchronization of linear discrete-time multi-agent systems.

PubMed

Liang, Hongjing; Zhang, Huaguang; Wang, Zhanshan

2015-11-01

This paper considers output synchronization of discrete-time multi-agent systems with directed communication topologies. The directed communication graph contains a spanning tree and the exosystem as its root. Distributed observer-based consensus protocols are proposed, based on the relative outputs of neighboring agents. A multi-step algorithm is presented to construct the observer-based protocols. In light of the discrete-time algebraic Riccati equation and internal model principle, synchronization problem is completed. At last, numerical simulation is provided to verify the effectiveness of the theoretical results. Copyright © 2015 ISA. Published by Elsevier Ltd. All rights reserved.

Global adaptive control for uncertain nonaffine nonlinear hysteretic systems.

PubMed

Liu, Yong-Hua; Huang, Liangpei; Xiao, Dongming; Guo, Yong

2015-09-01

In this paper, the global output tracking is investigated for a class of uncertain nonlinear hysteretic systems with nonaffine structures. By combining the solution properties of the hysteresis model with the novel backstepping approach, a robust adaptive control algorithm is developed without constructing a hysteresis inverse. The proposed control scheme is further modified to tackle the bounded disturbances by adaptively estimating their bounds. It is rigorously proven that the designed adaptive controllers can guarantee global stability of the closed-loop system. Two numerical examples are provided to show the effectiveness of the proposed control schemes. Copyright © 2015 ISA. Published by Elsevier Ltd. All rights reserved.

Numerical modeling of coupled nitrification-denitrification in sediment perfusion cores from the hyporheic zone of the Shingobee River, MN

USGS Publications Warehouse

Sheibley, R.W.; Jackman, A.P.; Duff, J.H.; Triska, F.J.

2003-01-01

Nitrification and denitrification kinetics in sediment perfusion cores were numerically modeled and compared to experiments on cores from the Shingobee River MN, USA. The experimental design incorporated mixing groundwater discharge with stream water penetration into the cores, which provided a well-defined, one-dimensional simulation of in situ hydrologic conditions. Ammonium (NH+4) and nitrate (NO-3) concentration gradients suggested the upper region of the cores supported coupled nitrification-denitrification, where groundwater-derived NH+4 was first oxidized to NO-3 then subsequently reduced via denitrification to N2. Nitrification and denitrification were modeled using a Crank-Nicolson finite difference approximation to a one-dimensional advection-dispersion equation. Both processes were modeled using first-order reaction kinetics because substrate concentrations (NH+4 and NO-3) were much smaller than published Michaelis constants. Rate coefficients for nitrification and denitrification ranged from 0.2 to 15.8 h-1 and 0.02 to 8.0 h-1, respectively. The rate constants followed an Arrhenius relationship between 7.5 and 22 ??C. Activation energies for nitrification and denitrification were 162 and 97.3 kJ/mol, respectively. Seasonal NH+4 concentration patterns in the Shingobee River were accurately simulated from the relationship between perfusion core temperature and NH+4 flux to the overlying water. The simulations suggest that NH+4 in groundwater discharge is controlled by sediment nitrification that, consistent with its activation energy, is strongly temperature dependent. ?? 2003 Elsevier Ltd. All rights reserved.

Documentation for the MODFLOW 6 framework

USGS Publications Warehouse

Hughes, Joseph D.; Langevin, Christian D.; Banta, Edward R.

2017-08-10

MODFLOW is a popular open-source groundwater flow model distributed by the U.S. Geological Survey. Growing interest in surface and groundwater interactions, local refinement with nested and unstructured grids, karst groundwater flow, solute transport, and saltwater intrusion, has led to the development of numerous MODFLOW versions. Often times, there are incompatibilities between these different MODFLOW versions. The report describes a new MODFLOW framework called MODFLOW 6 that is designed to support multiple models and multiple types of models. The framework is written in Fortran using a modular object-oriented design. The primary framework components include the simulation (or main program), Timing Module, Solutions, Models, Exchanges, and Utilities. The first version of the framework focuses on numerical solutions, numerical models, and numerical exchanges. This focus on numerical models allows multiple numerical models to be tightly coupled at the matrix level.

Combining IRIS/Hinode Observations and Modeling: a Pathfinder for Coronal Heating

NASA Astrophysics Data System (ADS)

Antolin, P.; Okamoto, J.; De Pontieu, B.

2015-12-01

The combination of imaging and spectroscopic instruments with multiple temperature diagnostics at high spatial, temporal and spectral resolution can allow to recover the 3D plasma flow and thermodynamic evolution associated with specific coronal heating mechanisms. Although very hard considering the complexity of the solar atmosphere, this approach is becoming possible now through combination of instruments such as IRIS and Hinode, and with proper guiding from advanced numerical simulations and forward modeling. In this talk I will review recent examples of this approach, focusing on a particular, recently published, case study, that serves as a pathfinder in the search for the dominant coronal heating mechanism. In this case, resonant absorption, a long hypothesised wave-related energy conversion mechanism is spotted in action for the first time, and is characterised by a peculiar 3D motion of the plasma. With the help of 3D MHD numerical simulations and forward modeling the observational signatures of resonant absorption are characterised, matching very well the observational results. The process through which this mechanism can lead to observed significant heating in the solar corona is further identified: the resonant flow becomes turbulent following dynamic instabilities and heats the plasma. I will show how this resonance + instability process is expected in different scenarios of the solar atmosphere (the corona, prominences and spicules) and can potentially explain several observed features that remain so far unexplained.

Tocopherol And Tocotrienol: Therapeutic Potential In Animal Models of Stress.

PubMed

Azlina, Mohd Fahami Nur; Kamisah, Yusof; Qodriyah, Mohd Saad

2017-11-22

Scientific reports had shown that stress is related to numerous pathological changes in the body. These pathological changes can bring about numerous diseases and can significantly cause negative effects in an individual. These include gastric ulcer, liver pathology and neurobehavioral changes. A common pathogenesis in many diseases related to stress involves oxidative damage. Therefore, the administration of antioxidants such as vitamin E is a reasonable therapeutic approach. However, there is conflicting evidence about antioxidant supplementation. The aim of this work was to summarize documented reports on the effects of tocopherol and tocotrienol on various pathological changes induced by stress. This review will reveal the scientific evidence of enteral supplementation of vitamin E in the forms of tocotrienol and tocopherol in animal models of stress. These models mimic the stress endured by critically ill patients in a clinical setting and psychological stress in individuals. Positive outcomes from enteral feeding of vitamin E in reducing the occurrence of stress-induced pathological changes are discussed in this review. These positive findings include their ability to reduced stress-induced gastric ulcers, elevated liver enzymes and improved locomotors activity. Evidences showing tocotrienol and tocopherol effects are not just related to its ability to reduce oxidative stress but also acting on other mechanism are discussed. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

Bose-Einstein condensation in atomic alkali gases

NASA Astrophysics Data System (ADS)

Dodd, Robert J.

1998-05-01

I present a review of the time-independent Gross-Pitaevskii (GP), Bogoliubov, and finite-temperature Hartree-Fock-Bogoliubov (HFB) mean-field theories used to study trapped, Bose-Einstein condensed alkali gases. Numerical solutions of the (zero-temperature) GP equation are presented for attractive (negative scattering length) and repulsive (positive scattering length) interactions. Comparison is made with the Thomas-Fermi and (variational) trial wavefunction appr oximations that are used in the literature to study condensed gases. Numerical calculations of the (zero-temperature) Bogoliubov quasi-particle excitation frequencies are found to be in excellent agreement with the experimental results. The finite-temperature properties of condensed gases are examined using the Popov approximation (of the HFB theory) and a simple two-gas model. Specific, quantitative comparisons are made with experimental results for finite-temperature excitation frequencies. Qualitative comparisons are made between the results of the Popov approximation, two-gas model, and other published models for condensate fraction and thermal density distribution. The time-independent mean-field theories are found to be in excellent agreement with experimental results at relatively low temperatures (high condensate fractions). However, at higher temperatures (and condensate fractions of less than 50%) there are significant discrepancies between experimental data and theoretical calculations. This work was undertaken at the University of Maryland at College Park and was supported in part by the National Science Foundation (PHY-9601261) and the U.S. Office of Naval Research.

Prediction of the characteristics of two types of pressure waves in the cochlea: Theoretical considerations

NASA Astrophysics Data System (ADS)

Andoh, Masayoshi; Wada, Hiroshi

2004-07-01

The aim of this study was to predict the characteristics of two types of cochlear pressure waves, so-called fast and slow waves. A two-dimensional finite-element model of the organ of Corti (OC), including fluid-structure interaction with the surrounding lymph fluid, was constructed. The geometry of the OC at the basal turn was determined from morphological measurements of others in the gerbil hemicochlea. As far as mechanical properties of the materials within the OC are concerned, previously determined mechanical properties of portions within the OC were adopted, and unknown mechanical features were determined from the published measurements of static stiffness. Time advance of the fluid-structure scheme was achieved by a staggered approach. Using the model, the magnitude and phase of the fast and slow waves were predicted so as to fit the numerically obtained pressure distribution in the scala tympani with what is known about intracochlear pressure measurement. When the predicted pressure waves were applied to the model, the numerical result of the velocity of the basilar membrane showed good agreement with the experimentally obtained velocity of the basilar membrane documented by others. Thus, the predicted pressure waves appeared to be reliable. Moreover, it was found that the fluid-structure interaction considerably influences the dynamic behavior of the OC at frequencies near the characteristic frequency.

Rate-equation modelling and ensemble approach to extraction of parameters for viral infection-induced cell apoptosis and necrosis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Domanskyi, Sergii; Schilling, Joshua E.; Privman, Vladimir, E-mail: privman@clarkson.edu

We develop a theoretical approach that uses physiochemical kinetics modelling to describe cell population dynamics upon progression of viral infection in cell culture, which results in cell apoptosis (programmed cell death) and necrosis (direct cell death). Several model parameters necessary for computer simulation were determined by reviewing and analyzing available published experimental data. By comparing experimental data to computer modelling results, we identify the parameters that are the most sensitive to the measured system properties and allow for the best data fitting. Our model allows extraction of parameters from experimental data and also has predictive power. Using the model wemore » describe interesting time-dependent quantities that were not directly measured in the experiment and identify correlations among the fitted parameter values. Numerical simulation of viral infection progression is done by a rate-equation approach resulting in a system of “stiff” equations, which are solved by using a novel variant of the stochastic ensemble modelling approach. The latter was originally developed for coupled chemical reactions.« less

There is more than one way to model an elephant. Experiment-driven modeling of the actin cytoskeleton.

PubMed

Ditlev, Jonathon A; Mayer, Bruce J; Loew, Leslie M

2013-02-05

Mathematical modeling has established its value for investigating the interplay of biochemical and mechanical mechanisms underlying actin-based motility. Because of the complex nature of actin dynamics and its regulation, many of these models are phenomenological or conceptual, providing a general understanding of the physics at play. But the wealth of carefully measured kinetic data on the interactions of many of the players in actin biochemistry cries out for the creation of more detailed and accurate models that could permit investigators to dissect interdependent roles of individual molecular components. Moreover, no human mind can assimilate all of the mechanisms underlying complex protein networks; so an additional benefit of a detailed kinetic model is that the numerous binding proteins, signaling mechanisms, and biochemical reactions can be computationally organized in a fully explicit, accessible, visualizable, and reusable structure. In this review, we will focus on how comprehensive and adaptable modeling allows investigators to explain experimental observations and develop testable hypotheses on the intracellular dynamics of the actin cytoskeleton. Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Numerical model updating technique for structures using firefly algorithm

NASA Astrophysics Data System (ADS)

Sai Kubair, K.; Mohan, S. C.

2018-03-01

Numerical model updating is a technique used for updating the existing experimental models for any structures related to civil, mechanical, automobiles, marine, aerospace engineering, etc. The basic concept behind this technique is updating the numerical models to closely match with experimental data obtained from real or prototype test structures. The present work involves the development of numerical model using MATLAB as a computational tool and with mathematical equations that define the experimental model. Firefly algorithm is used as an optimization tool in this study. In this updating process a response parameter of the structure has to be chosen, which helps to correlate the numerical model developed with the experimental results obtained. The variables for the updating can be either material or geometrical properties of the model or both. In this study, to verify the proposed technique, a cantilever beam is analyzed for its tip deflection and a space frame has been analyzed for its natural frequencies. Both the models are updated with their respective response values obtained from experimental results. The numerical results after updating show that there is a close relationship that can be brought between the experimental and the numerical models.

Author! Author! Making Kids Laugh: Jon Scieszka

ERIC Educational Resources Information Center

Brodie, Carolyn S.

2004-01-01

This article presents a brief biography of author Jon Scieszka, best known for his first published title, "The True Story of the Three Little Pigs!" which has become a modern classic. The publication of this creative and inventive title led to the numerous fractured fairy tales published since its release in 1989. His books have received numerous…

New Zealand Journal of Educational Studies: Cumulative Index of Volumes 1-17, 1966-1982.

ERIC Educational Resources Information Center

Marland, E. J., Comp.

This cumulative index lists all articles and book reviews published in the "New Zealand Journal of Educational Studies" from 1966 to 1982. The index consists of three sections. In the main entry section, citations are grouped in numerical order beginning with the first article published. The author and institution index provides access…

Temporal variation in phenotypic gender and expected functional gender within and among individuals in an annual plant.

PubMed

Austen, Emily J; Weis, Arthur E

2014-07-01

Adaptive explanations for variation in sex allocation centre on variation in resource status and variation in the mating environment. The latter can occur when dichogamy causes siring opportunity to vary across the flowering season. In this study, it is hypothesized that the widespread tendency towards declining fruit-set from first to last flowers on plants can similarly lead to a varying mating environment by causing a temporal shift in the quality (not quantity) of siring opportunities. A numerical model was developed to examine the effects of declining fruit-set on the expected male versus female reproductive success (functional gender) of first and last flowers on plants, and of early- and late-flowering plants. Within- and among-plant temporal variation in pollen production, ovule production and fruit-set in 70 Brassica rapa plants was then characterized to determine if trends in male and female investment mirror expected trends in functional gender. Under a wide range of model conditions, functional femaleness decreased sharply in the last flowers on plants, and increased from early- to late-flowering plants in the population. In B. rapa, pollen production decreased more rapidly than ovule production from first to last flowers, leading to a within-plant increase in phenotypic femaleness. Among plants, ovule production decreased from early- to late-flowering plants, causing a temporal decrease in phenotypic femaleness. The numerical model confirmed that declining fruit-set can drive temporal variation in functional gender, especially among plants. The discrepancy between observed trends in phenotypic gender in B. rapa and expected functional gender predicted by the numerical model does not rule out the possibility that male reproductive success decreases with later flowering onset. If so, plants may experience selection for early flowering through male fitness. © The Author 2014. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Program Code Generator for Cardiac Electrophysiology Simulation with Automatic PDE Boundary Condition Handling

PubMed Central

Punzalan, Florencio Rusty; Kunieda, Yoshitoshi; Amano, Akira

2015-01-01

Clinical and experimental studies involving human hearts can have certain limitations. Methods such as computer simulations can be an important alternative or supplemental tool. Physiological simulation at the tissue or organ level typically involves the handling of partial differential equations (PDEs). Boundary conditions and distributed parameters, such as those used in pharmacokinetics simulation, add to the complexity of the PDE solution. These factors can tailor PDE solutions and their corresponding program code to specific problems. Boundary condition and parameter changes in the customized code are usually prone to errors and time-consuming. We propose a general approach for handling PDEs and boundary conditions in computational models using a replacement scheme for discretization. This study is an extension of a program generator that we introduced in a previous publication. The program generator can generate code for multi-cell simulations of cardiac electrophysiology. Improvements to the system allow it to handle simultaneous equations in the biological function model as well as implicit PDE numerical schemes. The replacement scheme involves substituting all partial differential terms with numerical solution equations. Once the model and boundary equations are discretized with the numerical solution scheme, instances of the equations are generated to undergo dependency analysis. The result of the dependency analysis is then used to generate the program code. The resulting program code are in Java or C programming language. To validate the automatic handling of boundary conditions in the program code generator, we generated simulation code using the FHN, Luo-Rudy 1, and Hund-Rudy cell models and run cell-to-cell coupling and action potential propagation simulations. One of the simulations is based on a published experiment and simulation results are compared with the experimental data. We conclude that the proposed program code generator can be used to generate code for physiological simulations and provides a tool for studying cardiac electrophysiology. PMID:26356082

Computational modeling of fully-ionized, magnetized plasmas using the fluid approximation

NASA Astrophysics Data System (ADS)

Schnack, Dalton

2005-10-01

Strongly magnetized plasmas are rich in spatial and temporal scales, making a computational approach useful for studying these systems. The most accurate model of a magnetized plasma is based on a kinetic equation that describes the evolution of the distribution function for each species in six-dimensional phase space. However, the high dimensionality renders this approach impractical for computations for long time scales in relevant geometry. Fluid models, derived by taking velocity moments of the kinetic equation [1] and truncating (closing) the hierarchy at some level, are an approximation to the kinetic model. The reduced dimensionality allows a wider range of spatial and/or temporal scales to be explored. Several approximations have been used [2-5]. Successful computational modeling requires understanding the ordering and closure approximations, the fundamental waves supported by the equations, and the numerical properties of the discretization scheme. We review and discuss several ordering schemes, their normal modes, and several algorithms that can be applied to obtain a numerical solution. The implementation of kinetic parallel closures is also discussed [6].[1] S. Chapman and T.G. Cowling, ``The Mathematical Theory of Non-Uniform Gases'', Cambridge University Press, Cambridge, UK (1939).[2] R.D. Hazeltine and J.D. Meiss, ``Plasma Confinement'', Addison-Wesley Publishing Company, Redwood City, CA (1992).[3] L.E. Sugiyama and W. Park, Physics of Plasmas 7, 4644 (2000).[4] J.J. Ramos, Physics of Plasmas, 10, 3601 (2003).[5] P.J. Catto and A.N. Simakov, Physics of Plasmas, 11, 90 (2004).[6] E.D. Held et al., Phys. Plasmas 11, 2419 (2004)

New developments in the theoretical treatment of low dimensional strongly correlated systems.

PubMed

James, Andrew J A; Konik, Robert M; Lecheminant, Philippe; Robinson, Neil; Tsvelik, Alexei M

2017-10-09

We review two important non-perturbative approaches for extracting the physics of low- dimensional strongly correlated quantum systems. Firstly, we start by providing a comprehensive review of non-Abelian bosonization. This includes an introduction to the basic elements of confor- mal field theory as applied to systems with a current algebra, and we orient the reader by presenting a number of applications of non-Abelian bosonization to models with large symmetries. We then tie this technique into recent advances in the ability of cold atomic systems to realize complex symme- tries. Secondly, we discuss truncated spectrum methods for the numerical study of systems in one and two dimensions. For one-dimensional systems we provide the reader with considerable insight into the methodology by reviewing canonical applications of the technique to the Ising model (and its variants) and the sine-Gordon model. Following this we review recent work on the development of renormalization groups, both numerical and analytical, that alleviate the effects of truncating the spectrum. Using these technologies, we consider a number of applications to one-dimensional systems: properties of carbon nanotubes, quenches in the Lieb-Liniger model, 1+1D quantum chro- modynamics, as well as Landau-Ginzburg theories. In the final part we move our attention to consider truncated spectrum methods applied to two-dimensional systems. This involves combining truncated spectrum methods with matrix product state algorithms. We describe applications of this method to two-dimensional systems of free fermions and the quantum Ising model, including their non-equilibrium dynamics. © 2017 IOP Publishing Ltd.

Universal model of slow pyrolysis technology producing biochar and heat from standard biomass needed for the techno-economic assessment.

PubMed

Klinar, Dušan

2016-04-01

Biochar as a soil amendment and carbon sink becomes in last period one of the vast, interesting product of slow pyrolysis. Simplest and most used industrial process arrangement is a production of biochar and heat at the same time. Proposed mass and heat balance model consist of heat consumers (heat demand side) and heat generation-supply side. Direct burning of all generated uncondensed volatiles from biomass provides heat. Calculation of the mass and heat balance of both sides reveals the internal distribution of masses and energy inside process streams and units. Thermodynamic calculations verified not only the concept but also numerical range of the results. The comparisons with recent published scientific and vendors data prove its general applicability and reliability. The model opens the possibility for process efficiency innovations. Finally, the model was adapted to give more investors favorable results and support techno-economic assessments entirely. Copyright © 2016 Elsevier Ltd. All rights reserved.

Improvements to Wire Bundle Thermal Modeling for Ampacity Determination

NASA Technical Reports Server (NTRS)

Rickman, Steve L.; Iannello, Christopher J.; Shariff, Khadijah

2017-01-01

Determining current carrying capacity (ampacity) of wire bundles in aerospace vehicles is critical not only to safety but also to efficient design. Published standards provide guidance on determining wire bundle ampacity but offer little flexibility for configurations where wire bundles of mixed gauges and currents are employed with varying external insulation jacket surface properties. Thermal modeling has been employed in an attempt to develop techniques to assist in ampacity determination for these complex configurations. Previous developments allowed analysis of wire bundle configurations but was constrained to configurations comprised of less than 50 elements. Additionally, for vacuum analyses, configurations with very low emittance external jackets suffered from numerical instability in the solution. A new thermal modeler is presented allowing for larger configurations and is not constrained for low bundle infrared emissivity calculations. Formulation of key internal radiation and interface conductance parameters is discussed including the effects of temperature and air pressure on wire to wire thermal conductance. Test cases comparing model-predicted ampacity and that calculated from standards documents are presented.

Non-minimally coupled quintessence dark energy model with a cubic galileon term: a dynamical system analysis

NASA Astrophysics Data System (ADS)

Bhattacharya, Somnath; Mukherjee, Pradip; Roy, Amit Singha; Saha, Anirban

2018-03-01

We consider a scalar field which is generally non-minimally coupled to gravity and has a characteristic cubic Galilean-like term and a generic self-interaction, as a candidate of a Dark Energy model. The system is dynamically analyzed and novel fixed points with perturbative stability are demonstrated. Evolution of the system is numerically studied near a novel fixed point which owes its existence to the Galileon character of the model. It turns out that demanding the stability of this novel fixed point puts a strong restriction on the allowed non-minimal coupling and the choice of the self-interaction. The evolution of the equation of state parameter is studied, which shows that our model predicts an accelerated universe throughout and the phantom limit is only approached closely but never crossed. Our result thus extends the findings of Coley, Dynamical systems and cosmology. Kluwer Academic Publishers, Boston (2013) for more general NMC than linear and quadratic couplings.

Experimental and numerical studies of burning velocities and kinetic modeling for practical and surrogate fuels

NASA Astrophysics Data System (ADS)

Zhao, Zhenwei

To help understand the fuel oxidation process in practical combustion environments, laminar flame speeds and high temperature chemical kinetic models were studied for several practical fuels and "surrogate" fuels, such as propane, dimethyl ether (DME), and primary reference fuel (PRF) mixtures, gasoline and n-decane. The PIV system developed for the present work is described. The general principles for PIV measurements are outlined and the specific considerations are also reported. Laminar flame speeds were determined for propane/air over a range of equivalence ratios at initial temperature of 298 K, 500 K and 650 K and atmospheric pressure. Several data sets for propane/air laminar flame speeds with N 2 dilution are also reported. These results are compared to the literature data collected at the same conditions. The propane flame speed is also numerically calculated with a detailed kinetic model and multi component diffusion, including Soret effects. This thesis also presents experimentally determined laminar flame speeds for primary reference fuel (PRF) mixtures of n-heptane/iso-octane and real gasoline fuel at different initial temperature and at atmospheric pressure. Nitrogen dilution effects on the laminar flame speed are also studied for selected equivalence ratios at the same conditions. A minimization of detailed kinetic model for PRF mixtures on laminar flame speed conditions was performed and the measured flame speeds were compared with numerical predictions using this model. The measured laminar flame speeds of n-decane/air mixtures at 500 K and at atmospheric pressure with and without dilution were determined. The measured flame speeds are significantly different that those predicted using existing published kinetic models, including a model validated previously against high temperature data from flow reactor, jet-stirred reactor, shock tube ignition delay, and burner stabilized flame experiments. A significant update of this model is described which continues to predict the earlier validation experiments as well as the newly acquired laminar flame speed data and other recently published shock tube ignition delay measurements. A high temperature decomposition and oxidation model based on a hierarchical nature of reacting systems to reflect the new development in the small molecule and radical kinetics and thermochemistry and to evaluate recent measurements of DME laminar flame speeds is developed. The, thermal decomposition of DME was studied theoretically by using the RRKM/master equation approach and the high temperature model was then compared with the literature experimental data. The new model predicts well high temperature flow reactor data, high temperature shock tube ignition delays, and the species profiles from the burner-stabilized flames. Predictions of laminar flame speed and jet-stirred reactor data also reasonably agree with the available experimental data. The remaining uncertainties that need to be addressed for further model improvement will also be discussed. This thesis also presents a novel temperature-dependent feature sensitivity analysis methodology for combustion modeling. The obtained information is demonstrated to be of critical relevance in optimizing complex reaction schemes against multiple experimental targets. Applications of the presented approach are not limited to sensitivities with respect to reaction rate coefficients; the method can also be used to investigate any temperature-dependent property of interest (such as binary diffusion coefficients). This application is also demonstrated in this thesis.

a Numerical Model for Flue Gas Desulfurization System.

NASA Astrophysics Data System (ADS)

Kim, Sung Joon

The purpose of this work is to develop a reliable numerical model for spray dryer desulfurization systems. The shape of the spray dryer requires that a body fitted orthogonal coordinate system be used for the numerical model. The governing equations are developed in the general orthogonal coordinates and discretized to yield a system of algebraic equations. A turbulence model is also included in the numerical program. A new second order numerical scheme is developed and included in the numerical model. The trajectory approach is used to simulate the flow of the dispersed phase. Two-way coupling phenomena is modeled by this scheme. The absorption of sulfur dioxide into lime slurry droplets is simulated by a model based on gas -phase mass transfer. The program is applied to a typical spray dryer desulfurization system. The results show the capability of the program to predict the sensitivity of system performance to changes in operational parameters.

Evaluation of wave runup predictions from numerical and parametric models

USGS Publications Warehouse

Stockdon, Hilary F.; Thompson, David M.; Plant, Nathaniel G.; Long, Joseph W.

2014-01-01

Wave runup during storms is a primary driver of coastal evolution, including shoreline and dune erosion and barrier island overwash. Runup and its components, setup and swash, can be predicted from a parameterized model that was developed by comparing runup observations to offshore wave height, wave period, and local beach slope. Because observations during extreme storms are often unavailable, a numerical model is used to simulate the storm-driven runup to compare to the parameterized model and then develop an approach to improve the accuracy of the parameterization. Numerically simulated and parameterized runup were compared to observations to evaluate model accuracies. The analysis demonstrated that setup was accurately predicted by both the parameterized model and numerical simulations. Infragravity swash heights were most accurately predicted by the parameterized model. The numerical model suffered from bias and gain errors that depended on whether a one-dimensional or two-dimensional spatial domain was used. Nonetheless, all of the predictions were significantly correlated to the observations, implying that the systematic errors can be corrected. The numerical simulations did not resolve the incident-band swash motions, as expected, and the parameterized model performed best at predicting incident-band swash heights. An assimilated prediction using a weighted average of the parameterized model and the numerical simulations resulted in a reduction in prediction error variance. Finally, the numerical simulations were extended to include storm conditions that have not been previously observed. These results indicated that the parameterized predictions of setup may need modification for extreme conditions; numerical simulations can be used to extend the validity of the parameterized predictions of infragravity swash; and numerical simulations systematically underpredict incident swash, which is relatively unimportant under extreme conditions.

Objective biofidelity rating of a numerical human occupant model in frontal to lateral impact.

PubMed

de Lange, Ronald; van Rooij, Lex; Mooi, Herman; Wismans, Jac

2005-11-01

Both hardware crash dummies and mathematical human models have been developed largely using the same biomechanical data. For both, biofidelity is a main requirement. Since numerical modeling is not bound to hardware crash dummy design constraints, it allows more detailed modeling of the human and offering biofidelity for multiple directions. In this study the multi-directional biofidelity of the MADYMO human occupant model is assessed, to potentially protect occupants under various impact conditions. To evaluate the model's biofidelity, generally accepted requirements were used for frontal and lateral impact: tests proposed by EEVC and NHTSA and tests specified by ISO TR9790, respectively. A subset of the specified experiments was simulated with the human model. For lateral impact, the results were objectively rated according to the ISO protocol. Since no rating protocol was available for frontal impact, the ISO rating scheme for lateral was used for frontal, as far as possible. As a result, two scores show the overall model biofidelity for frontal and lateral impact, while individual ratings provide insight in the quality on body segment level. The results were compared with the results published for the THOR and WorldSID dummies, showing that the mathematical model exhibits a high level of multi-directional biofidelity. In addition, the performance of the human model in the NBDL 11G oblique test indicates a valid behavior of the model in intermediate directions as well. A new aspect of this study is the objective assessment of the multi-directional biofidelity of the mathematical human model according to accepted requirements. Although hardware dummies may always be used in regulations, it is expected that virtual testing with human models will serve in extrapolating outside the hardware test environment. This study was a first step towards simulating a wider range of impact conditions, such as angled impact and rollover.

The shallow water equations as a hybrid flow model for the numerical and experimental analysis of hydro power stations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ostermann, Lars; Seidel, Christian

2015-03-10

The numerical analysis of hydro power stations is an important method of the hydraulic design and is used for the development and optimisation of hydro power stations in addition to the experiments with the physical submodel of a full model in the hydraulic laboratory. For the numerical analysis, 2D and 3D models are appropriate and commonly used.The 2D models refer mainly to the shallow water equations (SWE), since for this flow model a large experience on a wide field of applications for the flow analysis of numerous problems in hydraulic engineering already exists. Often, the flow model is verified bymore » in situ measurements. In order to consider 3D flow phenomena close to singularities like weirs, hydro power stations etc. the development of a hybrid fluid model is advantageous to improve the quality and significance of the global model. Here, an extended hybrid flow model based on the principle of the SWE is presented. The hybrid flow model directly links the numerical model with the experimental data, which may originate from physical full models, physical submodels and in-situ measurements. Hence a wide field of application of the hybrid model emerges including the improvement of numerical models and the strong coupling of numerical and experimental analysis.« less

Sensitivity analysis of a variability in rock thermal conductivity concerning implications on the thermal evolution of the Brazilian South Atlantic passive continental margin

NASA Astrophysics Data System (ADS)

Stippich, Christian; Krob, Florian; Glasmacher, Ulrich Anton; Hackspacher, Peter Christian

2017-04-01

The aim of the research is to quantify the long-term evolution of the western South Atlantic passive continental margin (SAPCM) in SE-Brazil. Excellent onshore outcrop conditions and extensive pre-rift to post-rift archives between São Paulo and Laguna allow a high precision quantification of exhumation, and rock uplift rates, influencing physical parameters, long-term acting forces, and process-response systems. The research integrates published (Karl et al., 2013) and partly published thermochronological data from Brazil, and test lately published new concepts on causes of long-term landscape and lithospheric evolution in southern Brazil. Six distinct lithospheric blocks (Laguna, Florianópolis, Curitiba, Ilha Comprida, Peruibe and Santos), which are separated by fracture zones (Karl et al., 2013) are characterized by individual thermochronological age spectra. Furthermore, the thermal evolution derived by numerical modeling indicates variable post-rift exhumation histories of these blocks. In this context, we will provide information on the causes for the complex exhumation history of the Florianópolis, and adjacent blocks. Following up on our latest publication (Braun et al., 2016) regarding the effect of variability in rock thermal conductivity on exhumation rate estimates we performed a sensitivity analysis to quantify the effect of a differentiated lithospheric crust on the thermal evolution of the Florianópolis block versus exhumation rates estimated from modelling a lithospheric uniform crustal block. The long-term landscape evolution models with process rates were computed with the software code PECUBE (Braun, 2003; Braun et al., 2012). Testing model solutions obtained for a multidimensional parameter space against the real thermochronological and geomorphological data set, the most likely combinations of parameters, values, and rates can be constrained. References Braun, J., 2003. Pecube: A new finite element code to solve the 3D heat transport equation including the effects of a time-varying, finite amplitude surface topography. Computers and Geosciences, v.29, pp.787-794. Braun, J., Stippich, C., Glasmacher, U. A., 2016. The effect of variability in rock thermal conductivity on exhumation rate estimates from thermochronological data. Tectonophysics, v.690, pp.288-297 Braun, J., van der Beek, P., Valla, P., Robert, X., Herman, F., Goltzbacj, C., Pedersen, V., Perry, C., Simon-Labric, T., Prigent, C., 2012. Quantifying rates of landscape evolution and tectonic processes by thermochronology and numerical modeling of crustal heat transport using PECUBE. Tectonophysics, v.524-525, pp.1-28. Karl, M., Glasmacher, U.A., Kollenz, S., Franco-Magalhaes, A.O.B., Stockli, D.F., Hackspacher, P., 2013. Evolution of the South Atlantic passive continental margin in southern Brazil derived from zircon and apatite (U-Th-Sm)/He and fission-track data. Tectonophysics, Volume 604, Pages 224-244.

Modelling spatially regulated beta-catenin dynamics and invasion in intestinal crypts.

PubMed

Murray, Philip J; Kang, Jun-Won; Mirams, Gary R; Shin, Sung-Young; Byrne, Helen M; Maini, Philip K; Cho, Kwang-Hyun

2010-08-04

Experimental data (e.g., genetic lineage and cell population studies) on intestinal crypts reveal that regulatory features of crypt behavior, such as control via morphogen gradients, are remarkably well conserved among numerous organisms (e.g., from mouse and rat to human) and throughout the different regions of the small and large intestines. In this article, we construct a partial differential equation model of a single colonic crypt that describes the spatial distribution of Wnt pathway proteins along the crypt axis. The novelty of our continuum model is that it is based upon assumptions that can be directly related to processes at the cellular and subcellular scales. We use the model to predict how the distributions of Wnt pathway proteins are affected by mutations. The model is then extended to investigate how mutant cell populations can invade neighboring crypts. The model simulations suggest that cell crowding caused by increased proliferation and decreased cell loss may be sufficient for a mutant cell population to colonize a neighboring healthy crypt. 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Intelligent Exit-Selection Behaviors during a Room Evacuation

NASA Astrophysics Data System (ADS)

Zarita, Zainuddin; Lim Eng, Aik

2012-01-01

A modified version of the existing cellular automata (CA) model is proposed to simulate an evacuation procedure in a classroom with and without obstacles. Based on the numerous literature on the implementation of CA in modeling evacuation motions, it is notable that most of the published studies do not take into account the pedestrian's ability to select the exit route in their models. To resolve these issues, we develop a CA model incorporating a probabilistic neural network for determining the decision-making ability of the pedestrians, and simulate an exit-selection phenomenon in the simulation. Intelligent exit-selection behavior is observed in our model. From the simulation results, it is observed that occupants tend to select the exit closest to them when the density is low, but if the density is high they will go to an alternative exit so as to avoid a long wait. This reflects the fact that occupants may not fully utilize multiple exits during evacuation. The improvement in our proposed model is valuable for further study and for upgrading the safety aspects of building designs.

Numerical investigation into blood clotting at the bone-dental implant interface in the presence of an electrical stimulus.

PubMed

Vanegas-Acosta, J C; Garzón-Alvarado, D A; Lancellotti, V

2013-12-01

The insertion of a dental implant activates a sequence of wound healing events ending with bone formation and implant osseointegration. This sequence starts with the blood coagulation process and the formation of a fibrin network that detains spilt blood. Fibrin formation can be simplified as the kinetic reaction between thrombin and fibrinogen preceding the conversion of fibrinogen into fibrin. Based on experimental observations of the electrical properties of these molecules, we present a hypothesis for the mechanism of a static electrical stimulus in controlling the formation of the blood clot. Specifically, the electrical stimulus increases the fibrin network formation in such a way that a preferential region of higher fibrin density is obtained. This hypothesis is validated by means of a numerical model for the blood clot formation at the bone-dental implant interface. Numerical results compare favorably to experimental observations for blood clotting with and without the static electrical stimulus. It is concluded that the density of the fibrin network depends on the strength of the static electrical stimulus, and that the blood clot formation has a preferential direction of formation in the presence of the electrical signal. © 2013 Published by Elsevier Ltd. All rights reserved.

Numerical Homogenization of Jointed Rock Masses Using Wave Propagation Simulation

NASA Astrophysics Data System (ADS)

Gasmi, Hatem; Hamdi, Essaïeb; Bouden Romdhane, Nejla

2014-07-01

Homogenization in fractured rock analyses is essentially based on the calculation of equivalent elastic parameters. In this paper, a new numerical homogenization method that was programmed by means of a MATLAB code, called HLA-Dissim, is presented. The developed approach simulates a discontinuity network of real rock masses based on the International Society of Rock Mechanics (ISRM) scanline field mapping methodology. Then, it evaluates a series of classic joint parameters to characterize density (RQD, specific length of discontinuities). A pulse wave, characterized by its amplitude, central frequency, and duration, is propagated from a source point to a receiver point of the simulated jointed rock mass using a complex recursive method for evaluating the transmission and reflection coefficient for each simulated discontinuity. The seismic parameters, such as delay, velocity, and attenuation, are then calculated. Finally, the equivalent medium model parameters of the rock mass are computed numerically while taking into account the natural discontinuity distribution. This methodology was applied to 17 bench fronts from six aggregate quarries located in Tunisia, Spain, Austria, and Sweden. It allowed characterizing the rock mass discontinuity network, the resulting seismic performance, and the equivalent medium stiffness. The relationship between the equivalent Young's modulus and rock discontinuity parameters was also analyzed. For these different bench fronts, the proposed numerical approach was also compared to several empirical formulas, based on RQD and fracture density values, published in previous research studies, showing its usefulness and efficiency in estimating rapidly the Young's modulus of equivalent medium for wave propagation analysis.

Efficient modeling of interconnects and capacitive discontinuities in high-speed digital circuits. Thesis

NASA Technical Reports Server (NTRS)

Oh, K. S.; Schutt-Aine, J.

1995-01-01

Modeling of interconnects and associated discontinuities with the recent advances high-speed digital circuits has gained a considerable interest over the last decade although the theoretical bases for analyzing these structures were well-established as early as the 1960s. Ongoing research at the present time is focused on devising methods which can be applied to more general geometries than the ones considered in earlier days and, at the same time, improving the computational efficiency and accuracy of these methods. In this thesis, numerically efficient methods to compute the transmission line parameters of a multiconductor system and the equivalent capacitances of various strip discontinuities are presented based on the quasi-static approximation. The presented techniques are applicable to conductors embedded in an arbitrary number of dielectric layers with two possible locations of ground planes at the top and bottom of the dielectric layers. The cross-sections of conductors can be arbitrary as long as they can be described with polygons. An integral equation approach in conjunction with the collocation method is used in the presented methods. A closed-form Green's function is derived based on weighted real images thus avoiding nested infinite summations in the exact Green's function; therefore, this closed-form Green's function is numerically more efficient than the exact Green's function. All elements associated with the moment matrix are computed using the closed-form formulas. Various numerical examples are considered to verify the presented methods, and a comparison of the computed results with other published results showed good agreement.

Toward Overcoming the Local Minimum Trap in MFBD

DTIC Science & Technology

2015-07-14

the first two years of this grant: • A. Cornelio, E. Loli -Piccolomini, and J. G. Nagy. Constrained Variable Projection Method for Blind Deconvolution...Cornelio, E. Loli -Piccolomini, and J. G. Nagy. Constrained Numerical Optimization Meth- ods for Blind Deconvolution, Numerical Algorithms, volume 65, issue 1...Publications (published) during reporting period: A. Cornelio, E. Loli Piccolomini, and J. G. Nagy. Constrained Variable Projection Method for Blind

Tracing the source of numerical climate model uncertainties in precipitation simulations using a feature-oriented statistical model

NASA Astrophysics Data System (ADS)

Xu, Y.; Jones, A. D.; Rhoades, A.

2017-12-01

Precipitation is a key component in hydrologic cycles, and changing precipitation regimes contribute to more intense and frequent drought and flood events around the world. Numerical climate modeling is a powerful tool to study climatology and to predict future changes. Despite the continuous improvement in numerical models, long-term precipitation prediction remains a challenge especially at regional scales. To improve numerical simulations of precipitation, it is important to find out where the uncertainty in precipitation simulations comes from. There are two types of uncertainty in numerical model predictions. One is related to uncertainty in the input data, such as model's boundary and initial conditions. These uncertainties would propagate to the final model outcomes even if the numerical model has exactly replicated the true world. But a numerical model cannot exactly replicate the true world. Therefore, the other type of model uncertainty is related the errors in the model physics, such as the parameterization of sub-grid scale processes, i.e., given precise input conditions, how much error could be generated by the in-precise model. Here, we build two statistical models based on a neural network algorithm to predict long-term variation of precipitation over California: one uses "true world" information derived from observations, and the other uses "modeled world" information using model inputs and outputs from the North America Coordinated Regional Downscaling Project (NA CORDEX). We derive multiple climate feature metrics as the predictors for the statistical model to represent the impact of global climate on local hydrology, and include topography as a predictor to represent the local control. We first compare the predictors between the true world and the modeled world to determine the errors contained in the input data. By perturbing the predictors in the statistical model, we estimate how much uncertainty in the model's final outcomes is accounted for by each predictor. By comparing the statistical model derived from true world information and modeled world information, we assess the errors lying in the physics of the numerical models. This work provides a unique insight to assess the performance of numerical climate models, and can be used to guide improvement of precipitation prediction.

Open by default: a proposed copyright license and waiver agreement for open access research and data in peer-reviewed journals

PubMed Central

2012-01-01

Copyright and licensing of scientific data, internationally, are complex and present legal barriers to data sharing, integration and reuse, and therefore restrict the most efficient transfer and discovery of scientific knowledge. Much data are included within scientific journal articles, their published tables, additional files (supplementary material) and reference lists. However, these data are usually published under licenses which are not appropriate for data. Creative Commons CC0 is an appropriate and increasingly accepted method for dedicating data to the public domain, to enable data reuse with the minimum of restrictions. BioMed Central is committed to working towards implementation of open data-compliant licensing in its publications. Here we detail a protocol for implementing a combined Creative Commons Attribution license (for copyrightable material) and Creative Commons CC0 waiver (for data) agreement for content published in peer-reviewed open access journals. We explain the differences between legal requirements for attribution in copyright, and cultural requirements in scholarship for giving individuals credit for their work through citation. We argue that publishing data in scientific journals under CC0 will have numerous benefits for individuals and society, and yet will have minimal implications for authors and minimal impact on current publishing and research workflows. We provide practical examples and definitions of data types, such as XML and tabular data, and specific secondary use cases for published data, including text mining, reproducible research, and open bibliography. We believe this proposed change to the current copyright and licensing structure in science publishing will help clarify what users – people and machines – of the published literature can do, legally, with journal articles and make research using the published literature more efficient. We further believe this model could be adopted across multiple publishers, and invite comment on this article from all stakeholders in scientific research. PMID:22958225

Modularized Smad-regulated TGFβ signaling pathway.

PubMed

Li, Yongfeng; Wang, Minli; Carra, Claudio; Cucinotta, Francis A

2012-12-01

The transforming Growth Factor β (TGFβ) signaling pathway is a prominent regulatory signaling pathway controlling various important cellular processes. TGFβ signaling can be induced by several factors including ionizing radiation. The pathway is regulated in a negative feedback loop through promoting the nuclear import of the regulatory Smads and a subsequent expression of inhibitory Smad7, that forms ubiquitin ligase with Smurf2, targeting active TGFβ receptors for degradation. In this work, we proposed a mathematical model to study the Smad-regulated TGFβ signaling pathway. By modularization, we are able to analyze mathematically each component subsystem and recover the nonlinear dynamics of the entire network system. Meanwhile the excitability, a common feature observed in the biological systems, in the TGFβ signaling pathway is discussed and supported as well by numerical simulation, indicating the robustness of the model. Published by Elsevier Inc.

Mg and Mg alloys: how comparable are in vitro and in vivo corrosion rates? A review.

PubMed

Martinez Sanchez, Adela Helvia; Luthringer, Bérengère J C; Feyerabend, Frank; Willumeit, Regine

2015-02-01

Due to their biodegradability, magnesium and magnesium-based alloys could represent the third generation of biomaterials. However, their mechanical properties and time of degradation have to match the needs of applications. Several approaches, such as choice of alloying elements or tailored microstructure, are employed to tailor corrosion behaviour. Due to the high electrochemical activity of Mg, numerous environmental factors (e.g. temperature and surrounding ion composition) influence its corrosion behaviour, making it unpredictable. Nevertheless, the need of reliable in vitro model(s) to predict in vivo implant degradation is increasing. In an attempt to find a correlation between in vitro and vivo corrosion rates, this review presents a systematic literature survey, as well as an attempt to correlate the different results. Copyright © 2014 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.

Intraplate deformation, stress in the lithosphere and the driving mechanism for plate motions

NASA Technical Reports Server (NTRS)

Hager, Bradford H.

1988-01-01

During this period work was carried out on three fronts relevant to the understanding of intraplate deformation, stress in the lithosphere, and the driving mechanisms for plate motions: (1) observational constraints, using GPS geodesy on the deformation in the region of the boundry between the Pacific and North American plates in central and southern California; (2) numerical modeling of the effects of temperature dependent lithospheric viscosity on the stress and strain history of extensional regimes; and (3) improvement of estimates of mantle viscosity variation, the long-wave-length density variations in the mantle, and the topography of the core-mantel boundary from modeling of geoid anomalies, nutation, and changes in length of day. These projects are described in more detail, followed by a discussion of meetings attended and a list of abstracts and papers submitted and/or published.

Empirical study on dyad act-degree distribution in some collaboration networks

NASA Astrophysics Data System (ADS)

Chang, Hui; Zhang, Pei-Pei; He, Yue; He, Da-Ren

2006-03-01

We (and cooperators) suggest studying the evolution of the extended collaboration networks by a dyad-act organizing model. The analytic and numeric studies of the model lead to a conclusion that most of the collaboration networks should show a dyad act-degree distribution (how many acts a dyad belongs to) between a power law and an exponential function, which can be described by a shifted power law. We have done an empirical study on dyad act-degree distribution in some collaboration networks. They are: the train networks in China, the bus network of Beijing, and traditional Chinese medical prescription formulation network. The results show good agreement with this conclusion. We also discuss what dyad act-degree implies in these networks and what are the possible applications of the study. The details will be published elsewhere.

A Quantitative Comparison of the Behavior of Human Ventricular Cardiac Electrophysiology Models in Tissue

PubMed Central

Elshrif, Mohamed M.; Cherry, Elizabeth M.

2014-01-01

Numerical integration of mathematical models of heart cell electrophysiology provides an important computational tool for studying cardiac arrhythmias, but the abundance of available models complicates selecting an appropriate model. We study the behavior of two recently published models of human ventricular action potentials, the Grandi-Pasqualini-Bers (GPB) and the O'Hara-Virág-Varró-Rudy (OVVR) models, and compare the results with four previously published models and with available experimental and clinical data. We find the shapes and durations of action potentials and calcium transients differ between the GPB and OVVR models, as do the magnitudes and rate-dependent properties of transmembrane currents and the calcium transient. Differences also occur in the steady-state and S1–S2 action potential duration and conduction velocity restitution curves, including a maximum conduction velocity for the OVVR model roughly half that of the GPB model and well below clinical values. Between single cells and tissue, both models exhibit differences in properties, including maximum upstroke velocity, action potential amplitude, and minimum diastolic interval. Compared to experimental data, action potential durations for the GPB and OVVR models agree fairly well (although OVVR epicardial action potentials are shorter), but maximum slopes of steady-state restitution curves are smaller. Although studies show alternans in normal hearts, it occurs only in the OVVR model, and only for a narrow range of cycle lengths. We find initiated spiral waves do not progress to sustained breakup for either model. The dominant spiral wave period of the GPB model falls within clinically relevant values for ventricular tachycardia (VT), but for the OVVR model, the dominant period is longer than periods associated with VT. Our results should facilitate choosing a model to match properties of interest in human cardiac tissue and to replicate arrhythmia behavior more closely. Furthermore, by indicating areas where existing models disagree, our findings suggest avenues for further experimental work. PMID:24416228

Parameterizing sorption isotherms using a hybrid global-local fitting procedure.

PubMed

Matott, L Shawn; Singh, Anshuman; Rabideau, Alan J

2017-05-01

Predictive modeling of the transport and remediation of groundwater contaminants requires an accurate description of the sorption process, which is usually provided by fitting an isotherm model to site-specific laboratory data. Commonly used calibration procedures, listed in order of increasing sophistication, include: trial-and-error, linearization, non-linear regression, global search, and hybrid global-local search. Given the considerable variability in fitting procedures applied in published isotherm studies, we investigated the importance of algorithm selection through a series of numerical experiments involving 13 previously published sorption datasets. These datasets, considered representative of state-of-the-art for isotherm experiments, had been previously analyzed using trial-and-error, linearization, or non-linear regression methods. The isotherm expressions were re-fit using a 3-stage hybrid global-local search procedure (i.e. global search using particle swarm optimization followed by Powell's derivative free local search method and Gauss-Marquardt-Levenberg non-linear regression). The re-fitted expressions were then compared to previously published fits in terms of the optimized weighted sum of squared residuals (WSSR) fitness function, the final estimated parameters, and the influence on contaminant transport predictions - where easily computed concentration-dependent contaminant retardation factors served as a surrogate measure of likely transport behavior. Results suggest that many of the previously published calibrated isotherm parameter sets were local minima. In some cases, the updated hybrid global-local search yielded order-of-magnitude reductions in the fitness function. In particular, of the candidate isotherms, the Polanyi-type models were most likely to benefit from the use of the hybrid fitting procedure. In some cases, improvements in fitness function were associated with slight (<10%) changes in parameter values, but in other cases significant (>50%) changes in parameter values were noted. Despite these differences, the influence of isotherm misspecification on contaminant transport predictions was quite variable and difficult to predict from inspection of the isotherms. Copyright © 2017 Elsevier B.V. All rights reserved.

Customization of Curriculum Materials in Science: Motives, Challenges, and Opportunities

NASA Astrophysics Data System (ADS)

Romine, William L.; Banerjee, Tanvi

2012-02-01

Exemplary science instructors use inquiry to tailor content to student's learning needs; traditional textbooks treat science as a set of facts and a rigid curriculum. Publishers now allow instructors to compile pieces of published and/or self-authored text to make custom textbooks. This brings numerous advantages, including the ability to produce smaller, cheaper text and added flexibility on the teaching models used. Moreover, the internet allows instructors to decentralize textbooks through easy access to educational objects such as audiovisual simulations, individual textbook chapters, and scholarly research articles. However, these new opportunities bring with them new problems. With educational materials easy to access, manipulate and duplicate, it is necessary to define intellectual property boundaries, and the need to secure documents against unlawful copying and use is paramount. Engineers are developing and enhancing information embedding technologies, including steganography, cryptography, watermarking, and fingerprinting, to label and protect intellectual property. While these are showing their utility in securing information, hackers continue to find loop holes in these protection schemes, forcing engineers to constantly assess the algorithms to make them as secure as possible. As newer technologies rise, people still question whether custom publishing is desirable. Many instructors see the process as complex, costly, and substandard in comparison to using traditional text. Publishing companies are working to improve attitudes through advertising. What lacks is peer reviewed evidence showing that custom publishing improves learning. Studies exploring the effect of custom course materials on student attitude and learning outcomes are a necessary next step.

Numerical approaches to combustion modeling. Progress in Astronautics and Aeronautics. Vol. 135

DOE Office of Scientific and Technical Information (OSTI.GOV)

Oran, E.S.; Boris, J.P.

1991-01-01

Various papers on numerical approaches to combustion modeling are presented. The topics addressed include; ab initio quantum chemistry for combustion; rate coefficient calculations for combustion modeling; numerical modeling of combustion of complex hydrocarbons; combustion kinetics and sensitivity analysis computations; reduction of chemical reaction models; length scales in laminar and turbulent flames; numerical modeling of laminar diffusion flames; laminar flames in premixed gases; spectral simulations of turbulent reacting flows; vortex simulation of reacting shear flow; combustion modeling using PDF methods. Also considered are: supersonic reacting internal flow fields; studies of detonation initiation, propagation, and quenching; numerical modeling of heterogeneous detonations, deflagration-to-detonationmore » transition to reactive granular materials; toward a microscopic theory of detonations in energetic crystals; overview of spray modeling; liquid drop behavior in dense and dilute clusters; spray combustion in idealized configurations: parallel drop streams; comparisons of deterministic and stochastic computations of drop collisions in dense sprays; ignition and flame spread across solid fuels; numerical study of pulse combustor dynamics; mathematical modeling of enclosure fires; nuclear systems.« less

Numerical simulation of freshwater/seawater interaction in a dual-permeability karst system with conduits: the development of discrete-continuum VDFST-CFP model

NASA Astrophysics Data System (ADS)

Xu, Zexuan; Hu, Bill

2016-04-01

Dual-permeability karst aquifers of porous media and conduit networks with significant different hydrological characteristics are widely distributed in the world. Discrete-continuum numerical models, such as MODFLOW-CFP and CFPv2, have been verified as appropriate approaches to simulate groundwater flow and solute transport in numerical modeling of karst hydrogeology. On the other hand, seawater intrusion associated with fresh groundwater resources contamination has been observed and investigated in numbers of coastal aquifers, especially under conditions of sea level rise. Density-dependent numerical models including SEAWAT are able to quantitatively evaluate the seawater/freshwater interaction processes. A numerical model of variable-density flow and solute transport - conduit flow process (VDFST-CFP) is developed to provide a better description of seawater intrusion and submarine groundwater discharge in a coastal karst aquifer with conduits. The coupling discrete-continuum VDFST-CFP model applies Darcy-Weisbach equation to simulate non-laminar groundwater flow in the conduit system in which is conceptualized and discretized as pipes, while Darcy equation is still used in continuum porous media. Density-dependent groundwater flow and solute transport equations with appropriate density terms in both conduit and porous media systems are derived and numerically solved using standard finite difference method with an implicit iteration procedure. Synthetic horizontal and vertical benchmarks are created to validate the newly developed VDFST-CFP model by comparing with other numerical models such as variable density SEAWAT, couplings of constant density groundwater flow and solute transport MODFLOW/MT3DMS and discrete-continuum CFPv2/UMT3D models. VDFST-CFP model improves the simulation of density dependent seawater/freshwater mixing processes and exchanges between conduit and matrix. Continuum numerical models greatly overestimated the flow rate under turbulent flow condition but discrete-continuum models provide more accurate results. Parameters sensitivities analysis indicates that conduit diameter and friction factor, matrix hydraulic conductivity and porosity are important parameters that significantly affect variable-density flow and solute transport simulation. The pros and cons of model assumptions, conceptual simplifications and numerical techniques in VDFST-CFP are discussed. In general, the development of VDFST-CFP model is an innovation in numerical modeling methodology and could be applied to quantitatively evaluate the seawater/freshwater interaction in coastal karst aquifers. Keywords: Discrete-continuum numerical model; Variable density flow and transport; Coastal karst aquifer; Non-laminar flow

Missing data reconstruction using Gaussian mixture models for fingerprint images

NASA Astrophysics Data System (ADS)

Agaian, Sos S.; Yeole, Rushikesh D.; Rao, Shishir P.; Mulawka, Marzena; Troy, Mike; Reinecke, Gary

2016-05-01

Publisher's Note: This paper, originally published on 25 May 2016, was replaced with a revised version on 16 June 2016. If you downloaded the original PDF, but are unable to access the revision, please contact SPIE Digital Library Customer Service for assistance. One of the most important areas in biometrics is matching partial fingerprints in fingerprint databases. Recently, significant progress has been made in designing fingerprint identification systems for missing fingerprint information. However, a dependable reconstruction of fingerprint images still remains challenging due to the complexity and the ill-posed nature of the problem. In this article, both binary and gray-level images are reconstructed. This paper also presents a new similarity score to evaluate the performance of the reconstructed binary image. The offered fingerprint image identification system can be automated and extended to numerous other security applications such as postmortem fingerprints, forensic science, investigations, artificial intelligence, robotics, all-access control, and financial security, as well as for the verification of firearm purchasers, driver license applicants, etc.

Towards improving the efficiency of blowing through a permeable wall and prospects of its use for a flow control

NASA Astrophysics Data System (ADS)

Kornilov, V. I.; Boiko, A. V.

2016-10-01

Modern achievements, status, and prospects of studies on reducing the turbulent friction and aerodynamic drag with the help of the blowing through a permeable wall are discussed. The main focus is placed upon a physical modeling of the process of boundary layer blowing in the framework of the dimensional theory, a critical analysis of experimental and numerical results for different conditions of air blowing through a high-tech finely perforated wall including the case of external-pressure-flow air supply in wind tunnel, and elicitation of the physical mechanisms responsible for the reduction of turbulent friction at flow-exposed surfaces. It is shown that the use of air supply through the micro-perforated wall with low effective roughness, which is manufactured in compliance with the highest necessary requirements to quality and geometry of orifices, is quite a justified means for easy, affordable, and reliable control of near-wall turbulent flows in laboratory experiment and numerical simulation. This approach can provide a sustained reduction of local skin friction coefficient along flat plate, which in some cases reaches 90%. At the request of all authors of the paper and with the agreement of the Proceedings Editor, an updated version of this article was published on 26 October 2016. The original version supplied to AIP Publishing contained a misrepresentation in Figure 1. This has been corrected in the updated and republished article.

Isotherm ranking and selection using thirteen literature datasets involving hydrophobic organic compounds.

PubMed

Matott, L Shawn; Jiang, Zhengzheng; Rabideau, Alan J; Allen-King, Richelle M

2015-01-01

Numerous isotherm expressions have been developed for describing sorption of hydrophobic organic compounds (HOCs), including "dual-mode" approaches that combine nonlinear behavior with a linear partitioning component. Choosing among these alternative expressions for describing a given dataset is an important task that can significantly influence subsequent transport modeling and/or mechanistic interpretation. In this study, a series of numerical experiments were undertaken to identify "best-in-class" isotherms by refitting 10 alternative models to a suite of 13 previously published literature datasets. The corrected Akaike Information Criterion (AICc) was used for ranking these alternative fits and distinguishing between plausible and implausible isotherms for each dataset. The occurrence of multiple plausible isotherms was inversely correlated with dataset "richness", such that datasets with fewer observations and/or a narrow range of aqueous concentrations resulted in a greater number of plausible isotherms. Overall, only the Polanyi-partition dual-mode isotherm was classified as "plausible" across all 13 of the considered datasets, indicating substantial statistical support consistent with current advances in sorption theory. However, these findings are predicated on the use of the AICc measure as an unbiased ranking metric and the adoption of a subjective, but defensible, threshold for separating plausible and implausible isotherms. Copyright © 2015 Elsevier B.V. All rights reserved.

Dimensionality of the Knee Numeric-Entity Evaluation Score (KNEES-ACL): a condition-specific questionnaire.

PubMed

Comins, J D; Krogsgaard, M R; Kreiner, S; Brodersen, J

2013-10-01

The benefit of anterior cruciate ligament (ACL) reconstruction has been questioned based on patient-reported outcome measures (PROMs). Valid interpretation of such results requires confirmation of the psychometric properties of the PROM. Rasch analysis is the gold standard for validation of PROMs, yet PROMs used for ACL reconstruction have not been validated using Rasch analysis. We used Rasch analysis to investigate the psychometric properties of the Knee Numeric-Entity Evaluation Score (KNEES-ACL), a newly developed PROM for patients treated for ACL deficiency. Two-hundred forty-two patients pre- and post-ACL reconstruction completed the pilot PROM. Rasch models were used to assess the psychometric properties (e.g., unidimensionality, local response dependency, and differential item functioning). Forty-one items distributed across seven unidimensional constructs measuring impairment, functional limitations, and psychosocial consequences were confirmed to fit Rasch models. Fourteen items were removed because of statistical lack of fit and inadequate face validity. Local response dependency and differential item functioning were identified and adjusted. The KNEES-ACL is the first Rasch-validated condition-specific PROM constructed for patients with ACL deficiency and patients with ACL reconstruction. Thus, this instrument can be used for within- and between-group comparisons. © 2013 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Simulations and phantom evaluations of magnetic resonance electrical impedance tomography (MREIT) for breast cancer detection

NASA Astrophysics Data System (ADS)

Sadleir, Rosalind J.; Sajib, Saurav Z. K.; Kim, Hyung Joong; Kwon, Oh In; Woo, Eung Je

2013-05-01

MREIT is a new imaging modality that can be used to reconstruct high-resolution conductivity images of the human body. Since conductivity values of cancerous tissues in the breast are significantly higher than those of surrounding normal tissues, breast imaging using MREIT may provide a new noninvasive way of detecting early stage of cancer. In this paper, we present results of experimental and numerical simulation studies of breast MREIT. We built a realistic three-dimensional model of the human breast connected to a simplified model of the chest including the heart and evaluated the ability of MREIT to detect cancerous anomalies in a background material with similar electrical properties to breast tissue. We performed numerical simulations of various scenarios in breast MREIT including assessment of the effects of fat inclusions and effects related to noise levels, such as changing the amplitude of injected currents, effect of added noise and number of averages. Phantom results showed straightforward detection of cancerous anomalies in a background was possible with low currents and few averages. The simulation results showed it should be possible to detect a cancerous anomaly in the breast, while restricting the maximal current density in the heart below published levels for nerve excitation.

Decisions reduce sensitivity to subsequent information.

PubMed

Bronfman, Zohar Z; Brezis, Noam; Moran, Rani; Tsetsos, Konstantinos; Donner, Tobias; Usher, Marius

2015-07-07

Behavioural studies over half a century indicate that making categorical choices alters beliefs about the state of the world. People seem biased to confirm previous choices, and to suppress contradicting information. These choice-dependent biases imply a fundamental bound of human rationality. However, it remains unclear whether these effects extend to lower level decisions, and only little is known about the computational mechanisms underlying them. Building on the framework of sequential-sampling models of decision-making, we developed novel psychophysical protocols that enable us to dissect quantitatively how choices affect the way decision-makers accumulate additional noisy evidence. We find robust choice-induced biases in the accumulation of abstract numerical (experiment 1) and low-level perceptual (experiment 2) evidence. These biases deteriorate estimations of the mean value of the numerical sequence (experiment 1) and reduce the likelihood to revise decisions (experiment 2). Computational modelling reveals that choices trigger a reduction of sensitivity to subsequent evidence via multiplicative gain modulation, rather than shifting the decision variable towards the chosen alternative in an additive fashion. Our results thus show that categorical choices alter the evidence accumulation mechanism itself, rather than just its outcome, rendering the decision-maker less sensitive to new information. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

Thermal gravitational separation of ternary mixture n-dodecane/isobutylbenzene/tetralin components in a porous medium

NASA Astrophysics Data System (ADS)

Larabi, Mohamed Aziz; Mutschler, Dimitri; Mojtabi, Abdelkader

2016-06-01

Our present work focuses on the coupling between thermal diffusion and convection in order to improve the thermal gravitational separation of mixture components. The separation phenomenon was studied in a porous medium contained in vertical columns. We performed analytical and numerical simulations to corroborate the experimental measurements of the thermal diffusion coefficients of ternary mixture n-dodecane, isobutylbenzene, and tetralin obtained in microgravity in the international space station. Our approach corroborates the existing data published in the literature. The authors show that it is possible to quantify and to optimize the species separation for ternary mixtures. The authors checked, for ternary mixtures, the validity of the "forgotten effect hypothesis" established for binary mixtures by Furry, Jones, and Onsager. Two complete and different analytical resolution methods were used in order to describe the separation in terms of Lewis numbers, the separation ratios, the cross-diffusion coefficients, and the Rayleigh number. The analytical model is based on the parallel flow approximation. In order to validate this model, a numerical simulation was performed using the finite element method. From our new approach to vertical separation columns, new relations for mass fraction gradients and the optimal Rayleigh number for each component of the ternary mixture were obtained.

Three-dimensional numerical study of laminar confined slot jet impingement cooling using slurry of nano-encapsulated phase change material

NASA Astrophysics Data System (ADS)

Mohib Ur Rehman, M.; Qu, Z. G.; Fu, R. P.

2016-10-01

This Article presents a three dimensional numerical model investigating thermal performance and hydrodynamics features of the confined slot jet impingement using slurry of Nano Encapsulated Phase Change Material (NEPCM) as a coolant. The slurry is composed of water as a base fluid and n-octadecane NEPCM particles with mean diameter of 100nm suspended in it. A single phase fluid approach is employed to model the NEPCM slurry.The thermo physical properties of the NEPCM slurry are computed using modern approaches being proposed recently and governing equations are solved with a commercial Finite Volume based code. The effects of jet Reynolds number varying from 100 to 600 and particle volume fraction ranging from 0% to 28% are considered. The computed results are validated by comparing Nusselt number values at stagnation point with the previously published results with water as working fluid. It was found that adding NEPCM to the base fluid results with considerable amount of heat transfer enhancement.The highest values of heat transfer coefficients are observed at H/W=4 and Cm=0.28. However, due to the higher viscosity of slurry compared with the base fluid, the slurry can produce drastic increase in pressure drop of the system that increases with NEPCM particle loading and jet Reynolds number.

On the performance of a high head Francis turbine at design and off-design conditions

NASA Astrophysics Data System (ADS)

Aakti, B.; Amstutz, O.; Casartelli, E.; Romanelli, G.; Mangani, L.

2015-01-01

In the present paper, fully 360 degrees transient and steady-state simulations of a Francis turbine were performed at three operating conditions, namely at part load (PL), best efficiency point (BEP), and high load (HL), using different numerical approaches for the pressure-velocity coupling. The simulation domain includes the spiral casing with stay and guide vanes, the runner and the draft tube. The main target of the investigations is the numerical prediction of the overall performance of the high head Francis turbine model as well as local and integral quantities of the complete machine in different operating conditions. All results were compared with experimental data published by the workshop organization. All CFD simulations were performed at model scale with a new in-house, 3D, unstructured, object-oriented finite volume code within the framework of the open source OpenFOAM library. The novel fully coupled pressure-based solver is designed to solve the incompressible RANS- Equations and is capable of handling multiple references of frame (MRF). The obtained results show that the overall performance is well captured by the simulations. Regarding the local flow distributions within the inlet section of the draft-tube, the axial velocity is better estimated than the circumferential component.

Simplified method for numerical modeling of fiber lasers.

PubMed

Shtyrina, O V; Yarutkina, I A; Fedoruk, M P

2014-12-29

A simplified numerical approach to modeling of dissipative dispersion-managed fiber lasers is examined. We present a new numerical iteration algorithm for finding the periodic solutions of the system of nonlinear ordinary differential equations describing the intra-cavity dynamics of the dissipative soliton characteristics in dispersion-managed fiber lasers. We demonstrate that results obtained using simplified model are in good agreement with full numerical modeling based on the corresponding partial differential equations.

Physical and numerical studies of a fracture system model

NASA Astrophysics Data System (ADS)

Piggott, Andrew R.; Elsworth, Derek

1989-03-01

Physical and numerical studies of transient flow in a model of discretely fractured rock are presented. The physical model is a thermal analogue to fractured media flow consisting of idealized disc-shaped fractures. The numerical model is used to predict the behavior of the physical model. The use of different insulating materials to encase the physical model allows the effects of differing leakage magnitudes to be examined. A procedure for determining appropriate leakage parameters is documented. These parameters are used in forward analysis to predict the thermal response of the physical model. Knowledge of the leakage parameters and of the temporal variation of boundary conditions are shown to be essential to an accurate prediction. Favorable agreement is illustrated between numerical and physical results. The physical model provides a data source for the benchmarking of alternative numerical algorithms.

On the Various Aspects of Publishing Journal Articles and Academic Books

ERIC Educational Resources Information Center

Thompson, Bruce

2016-01-01

A list of important precepts to guide academic publishing is presented based on the author's experience as the author of numerous journal articles, the editor of 4 journals, and the author or editor of 11 books. These precepts cover the full array of the publication, from first conceptualizing a research project through promoting one's own work.…

A Step-by-Step Guide to Publishing Journal Articles and Strategies for Securing Impactful Publications

ERIC Educational Resources Information Center

Onwuegbuzie, Anthony J.

2016-01-01

In the last few years, I have been presenting workshops on publishing (among other topics) in many countries across 6 continents. And presenting these workshops in various countries has allowed me to learn the policies and practices of editors of journals representing numerous countries, thereby helping me to broaden the framework for writing…

Nondestructive testing for assessing wood members in structures : a review

Treesearch

R. J. Ross; R. F. Pellerin

1994-01-01

Numerous organizations have conducted research to develop nondestructive testing (NDT) techniques for assessing the condition of wood members in structures. A review of this research was published in 1991. This is an update of the 1991 report. It presents a comprehensive review of published research on the development and use of NDT tools for in-place assessment of...

Recent Trends in Japanese Mathematics Textbooks for Elementary Grades: Supporting Teachers to Teach Mathematics through Problem Solving

ERIC Educational Resources Information Center

Takahashi, Akihiko

2016-01-01

Problem solving has been a major theme in Japanese mathematics curricula for nearly 50 years. Numerous teacher reference books and lesson plans using problem solving have been published since the 1960s. Government-authorized mathematics textbooks for elementary grades, published by six private companies, have had more and more problem solving over…

Cloud Statistics for NASA Climate Change Studies

NASA Technical Reports Server (NTRS)

Wylie, Donald P.

1999-01-01

The Principal Investigator participated in two field experiments and developed a global data set on cirrus cloud frequency and optical depth to aid the development of numerical models of climate. Four papers were published under this grant. The accomplishments are summarized: (1) In SUCCESS (SUbsonic aircraft: Contrail & Cloud Effects Special Study) the Principal Investigator aided weather forecasters in the start of the field program. A paper also was published on the clouds studied in SUCCESS and the use of the satellite stereographic technique to distinguish cloud forms and heights of clouds. (2) In SHEBA (Surface Heat Budget in the Arctic) FIRE/ACE (Arctic Cloud Experiment) the Principal Investigator provided daily weather and cloud forecasts for four research aircraft crews, NASA's ER-2, UCAR's C-130, University of Washington's Convert 580, and the Canadian Atmospheric Environment Service's Convert 580. Approximately 105 forecasts were written. The Principal Investigator also made daily weather summaries with calculations of air trajectories for 54 flight days in the experiment. The trajectories show where the air sampled during the flights came from and will be used in future publications to discuss the origin and history of the air and clouds sampled by the aircraft. A paper discussing how well the FIRE/ACE data represent normal climatic conditions in the arctic is being prepared. (3) The Principal Investigator's web page became the source of information for weather forecasting by the scientists on the SHEBA ship. (4) Global Cirrus frequency and optical depth is a continuing analysis of global cloud cover and frequency distribution are being made from the NOAA polar orbiting weather satellites. This analysis is sensitive to cirrus clouds because of the radiative channels used. During this grant three papers were published which describe cloud frequencies, their optical properties and compare the Wisconsin FM Cloud Analysis to other global cloud data such as the International Satellite Cloud Climatology Program (ISCCP) and the Stratospheric Aerosol and Gas Experiment (SAGE). A summary of eight years of HIRS data will be published in late 1998. Important information from this study are: 1) cirrus clouds cover most of the earth, 2) they are found about 40% of the time globally, 3) in the tropics cirrus cloud frequencies are even higher, from 80-100%, 4) there is slight evidence that cirnis cloud cover is increasing in the northern hemisphere at about 0.5% per year, and 5) cirrus clouds have an average infrared transmittance of about 40% of the terrestrial radiation. (5) Global Cloud Frequency Statistics published on the Principal Investigator's web page have been used in the planning of the future CRYSTAL experiment and have been used for refinements of a global numerical model operated at the Colorado State University.

Efficient Numerical Simulation of Aerothermoelastic Hypersonic Vehicles

NASA Astrophysics Data System (ADS)

Klock, Ryan J.

Hypersonic vehicles operate in a high-energy flight environment characterized by high dynamic pressures, high thermal loads, and non-equilibrium flow dynamics. This environment induces strong fluid, thermal, and structural dynamics interactions that are unique to this flight regime. If these vehicles are to be effectively designed and controlled, then a robust and intuitive understanding of each of these disciplines must be developed not only in isolation, but also when coupled. Limitations on scaling and the availability of adequate test facilities mean that physical investigation is infeasible. Ever growing computational power offers the ability to perform elaborate numerical simulations, but also has its own limitations. The state of the art in numerical simulation is either to create ever more high-fidelity physics models that do not couple well and require too much processing power to consider more than a few seconds of flight, or to use low-fidelity analytical models that can be tightly coupled and processed quickly, but do not represent realistic systems due to their simplifying assumptions. Reduced-order models offer a middle ground by distilling the dominant trends of high-fidelity training solutions into a form that can be quickly processed and more tightly coupled. This thesis presents a variably coupled, variable-fidelity, aerothermoelastic framework for the simulation and analysis of high-speed vehicle systems using analytical, reduced-order, and surrogate modeling techniques. Full launch-to-landing flights of complete vehicles are considered and used to define flight envelopes with aeroelastic, aerothermal, and thermoelastic limits, tune in-the-loop flight controllers, and inform future design considerations. A partitioned approach to vehicle simulation is considered in which regions dominated by particular combinations of processes are made separate from the overall solution and simulated by a specialized set of models to improve overall processing speed and overall solution fidelity. A number of enhancements to this framework are made through 1. the implementation of a publish-subscribe code architecture for rapid prototyping of physics and process models. 2. the implementation of a selection of linearization and model identification methods including high-order pseudo-time forward difference, complex-step, and direct identification from ordinary differential equation inspection. 3. improvements to the aeroheating and thermal models with non-equilibrium gas dynamics and generalized temperature dependent material thermal properties. A variety of model reduction and surrogate model techniques are applied to a representative hypersonic vehicle on a terminal trajectory to enable complete aerothermoelastic flight simulations. Multiple terminal trajectories of various starting altitudes and Mach numbers are optimized to maximize final kinetic energy of the vehicle upon reaching the surface. Surrogate models are compared to represent the variation of material thermal properties with temperature. A new method is developed and shown to be both accurate and computationally efficient. While the numerically efficient simulation of high-speed vehicles is developed within the presented framework, the goal of real time simulation is hampered by the necessity of multiple nested convergence loops. An alternative all-in-one surrogate model method is developed based on singular-value decomposition and regression that is near real time. Finally, the aeroelastic stability of pressurized cylindrical shells is investigated in the context of a maneuvering axisymmetric high-speed vehicle. Moderate internal pressurization is numerically shown to decrease stability, as showed experimentally in the literature, yet not well reproduced analytically. Insights are drawn from time simulation results and used to inform approaches for future vehicle model development.

Pore-scale and continuum simulations of solute transport micromodel benchmark experiments

DOE PAGES

Oostrom, M.; Mehmani, Y.; Romero-Gomez, P.; ...

2014-06-18

Four sets of nonreactive solute transport experiments were conducted with micromodels. Three experiments with one variable, i.e., flow velocity, grain diameter, pore-aspect ratio, and flow-focusing heterogeneity were in each set. The data sets were offered to pore-scale modeling groups to test their numerical simulators. Each set consisted of two learning experiments, for which our results were made available, and one challenge experiment, for which only the experimental description and base input parameters were provided. The experimental results showed a nonlinear dependence of the transverse dispersion coefficient on the Peclet number, a negligible effect of the pore-aspect ratio on transverse mixing,more » and considerably enhanced mixing due to flow focusing. Five pore-scale models and one continuum-scale model were used to simulate the experiments. Of the pore-scale models, two used a pore-network (PN) method, two others are based on a lattice Boltzmann (LB) approach, and one used a computational fluid dynamics (CFD) technique. Furthermore, we used the learning experiments, by the PN models, to modify the standard perfect mixing approach in pore bodies into approaches to simulate the observed incomplete mixing. The LB and CFD models used the learning experiments to appropriately discretize the spatial grid representations. For the continuum modeling, the required dispersivity input values were estimated based on published nonlinear relations between transverse dispersion coefficients and Peclet number. Comparisons between experimental and numerical results for the four challenge experiments show that all pore-scale models were all able to satisfactorily simulate the experiments. The continuum model underestimated the required dispersivity values, resulting in reduced dispersion. The PN models were able to complete the simulations in a few minutes, whereas the direct models, which account for the micromodel geometry and underlying flow and transport physics, needed up to several days on supercomputers to resolve the more complex problems.« less

Role of sediment transport model to improve the tsunami numerical simulation

NASA Astrophysics Data System (ADS)

Sugawara, D.; Yamashita, K.; Takahashi, T.; Imamura, F.

2015-12-01

Are we overlooking an important factor for improved numerical prediction of tsunamis in shallow sea to onshore? In this presentation, several case studies on numerical modeling of tsunami-induced sediment transport are reviewed, and the role of sediment transport models for tsunami inundation simulation is discussed. Large-scale sediment transport and resulting geomorphological change occurred in the coastal areas of Tohoku, Japan, due to the 2011 Tohoku Earthquake Tsunami. Datasets obtained after the tsunami, including geomorphological and sedimentological data as well as hydrodynamic records, allows us to validate the numerical model in detail. The numerical modeling of the sediment transport by the 2011 tsunami depicted the severest erosion of sandy beach, as well as characteristic spatial patterns of erosion and deposition on the seafloor, which have taken place in Hirota Bay, Sanriku Coast. Quantitative comparisons of observation and simulation of the geomorphological changes in Sanriku Coast and Sendai Bay showed that the numerical model can predict the volumes of erosion and deposition with a right order. In addition, comparison of the simulation with aerial video footages demonstrated the numerical model is capable of tracking the overall processes of tsunami sediment transport. Although tsunami-induced sediment erosion and deposition sometimes cause significant geomorphological change, and may enhance tsunami hydrodynamic impact to the coastal zones, most tsunami simulations do not include sediment transport modeling. A coupled modeling of tsunami hydrodynamics and sediment transport draws a different picture of tsunami hazard, comparing with simple hydrodynamic modeling of tsunami inundation. Since tsunami-induced erosion, deposition and geomorphological change sometimes extend more than several kilometers across the coastline, two-dimensional horizontal model are typically used for the computation of tsunami hydrodynamics and sediment transport. Limitations of the conventional model and future challenges are discussed regarding further improvement of numerical modeling of tsunami and sediment transport. Improved numerical modeling may provide useful information for assessing sediment-related damages and planning post-disaster recovery.

A nonequilibrium model for reactive contaminant transport through fractured porous media: Model development and semianalytical solution

NASA Astrophysics Data System (ADS)

Joshi, Nitin; Ojha, C. S. P.; Sharma, P. K.

2012-10-01

In this study a conceptual model that accounts for the effects of nonequilibrium contaminant transport in a fractured porous media is developed. Present model accounts for both physical and sorption nonequilibrium. Analytical solution was developed using the Laplace transform technique, which was then numerically inverted to obtain solute concentration in the fracture matrix system. The semianalytical solution developed here can incorporate both semi-infinite and finite fracture matrix extent. In addition, the model can account for flexible boundary conditions and nonzero initial condition in the fracture matrix system. The present semianalytical solution was validated against the existing analytical solutions for the fracture matrix system. In order to differentiate between various sorption/transport mechanism different cases of sorption and mass transfer were analyzed by comparing the breakthrough curves and temporal moments. It was found that significant differences in the signature of sorption and mass transfer exists. Applicability of the developed model was evaluated by simulating the published experimental data of Calcium and Strontium transport in a single fracture. The present model simulated the experimental data reasonably well in comparison to the model based on equilibrium sorption assumption in fracture matrix system, and multi rate mass transfer model.

Lebedev acceleration and comparison of different photometric models in the inversion of lightcurves for asteroids

NASA Astrophysics Data System (ADS)

Lu, Xiao-Ping; Huang, Xiang-Jie; Ip, Wing-Huen; Hsia, Chi-Hao

2018-04-01

In the lightcurve inversion process where asteroid's physical parameters such as rotational period, pole orientation and overall shape are searched, the numerical calculations of the synthetic photometric brightness based on different shape models are frequently implemented. Lebedev quadrature is an efficient method to numerically calculate the surface integral on the unit sphere. By transforming the surface integral on the Cellinoid shape model to that on the unit sphere, the lightcurve inversion process based on the Cellinoid shape model can be remarkably accelerated. Furthermore, Matlab codes of the lightcurve inversion process based on the Cellinoid shape model are available on Github for free downloading. The photometric models, i.e., the scattering laws, also play an important role in the lightcurve inversion process, although the shape variations of asteroids dominate the morphologies of the lightcurves. Derived from the radiative transfer theory, the Hapke model can describe the light reflectance behaviors from the viewpoint of physics, while there are also many empirical models in numerical applications. Numerical simulations are implemented for the comparison of the Hapke model with the other three numerical models, including the Lommel-Seeliger, Minnaert, and Kaasalainen models. The results show that the numerical models with simple function expressions can fit well with the synthetic lightcurves generated based on the Hapke model; this good fit implies that they can be adopted in the lightcurve inversion process for asteroids to improve the numerical efficiency and derive similar results to those of the Hapke model.

The G3 Experience with Electronic Publishing: An Editor's Perspective

NASA Astrophysics Data System (ADS)

White, W. M.

2003-12-01

G3 (Geochemistry, Geophysics, Geosystems) is an all-electronic journal published jointly by the AGU, the Geochemical Society, and the European Association of Geochemistry. G3 publishes original scientific contributions pertaining to understanding the Earth as a system, including relevant observational, experimental, and theoretical investigations of the solid Earth, hydrosphere, atmosphere, and biosphere. The journal was initiated as a result of a grass roots effort with the following goals in mind: a copyright policy designed to enhance, rather than inhibit, the dissemination of scientific information (for example, allowing authors to post electronic reprints on their web sites), provide a means of publishing, in immediately useable formats, large data sets, provide a means for ready dissemination of computer modeling and analysis tools, and provide a forum where authors could use novel ways of illustrating both data and models (e.g., formats such as movies, virtual reality images, sound, mathematical models, etc.), and finally to reduce costs and speed publication. In most respects, G3 has been enormously successful and has met most of its goals. G3 began publishing in December of 1999; in the subsequent 3 1/2 years 625 papers have been submitted to it and 325 have been published. It currently has over 600 institutional and personal subscribers. Papers are submitted through the web (a variety of formats are accepted, however, Microsoft Word is most common) and are converted to Adobe pdf format for peer review. Except that it is fully electronic using the web and e-mail, the peer review process is traditional, which insures the quality of the papers published. Accepted papers are copyedited and converted to SGML for archival purposes. HTML and Acrobat pdf versions are then generated from the SGML and published as they are ready on the G3 web site (www.g-cubed.org). Large data sets are routinely published in digital formats that can be readily downloaded by readers and immediately imported into programs such as Excel. Numerous animations and movies have been published in animated GIF, Apple Quicktime, Macromedia Flash, and Wolfram Research Mathreader formats. Computer models and tools have been published as Excel Macros and MATLAB Scripts. Full color, high resolution images allow superior publication of detailed maps and photographs. While G3 is a success by most measures, the process of pioneering electronic publication has at times been painful and frustrating. Early on, there were problems and delays in converting files, particularly graphics, to pdf format for both review and final publication. Costs have been higher than anticipated - primarily due to the cost of file conversion and formatting. The time from acceptance to publication (currently 10 weeks), although improving, it still longer than the goal, again because of the time required for copy-editing and formatting. Automation of this process in the future is the primary opportunity to both reduce cost and further speed publication. Authors have been slow to take advantage of the new illustration formats, with most relying on tradition figures instead. This will likely change slowly in the future, as these new formats, and the software tools to create them, become more familiar.

A physically-based continuum damage mechanics model for numerical prediction of damage growth in laminated composite plates

NASA Astrophysics Data System (ADS)

Williams, Kevin Vaughan

Rapid growth in use of composite materials in structural applications drives the need for a more detailed understanding of damage tolerant and damage resistant design. Current analytical techniques provide sufficient understanding and predictive capabilities for application in preliminary design, but current numerical models applicable to composites are few and far between and their development into well tested, rigorous material models is currently one of the most challenging fields in composite materials. The present work focuses on the development, implementation, and verification of a plane-stress continuum damage mechanics based model for composite materials. A physical treatment of damage growth based on the extensive body of experimental literature on the subject is combined with the mathematical rigour of a continuum damage mechanics description to form the foundation of the model. The model has been implemented in the LS-DYNA3D commercial finite element hydrocode and the results of the application of the model are shown to be physically meaningful and accurate. Furthermore it is demonstrated that the material characterization parameters can be extracted from the results of standard test methodologies for which a large body of published data already exists for many materials. Two case studies are undertaken to verify the model by comparison with measured experimental data. The first series of analyses demonstrate the ability of the model to predict the extent and growth of damage in T800/3900-2 carbon fibre reinforced polymer (CFRP) plates subjected to normal impacts over a range of impact energy levels. The predicted force-time and force-displacement response of the panels compare well with experimental measurements. The damage growth and stiffness reduction properties of the T800/3900-2 CFRP are derived using published data from a variety of sources without the need for parametric studies. To further demonstrate the physical nature of the model, a IM6/937 CFRP with a more brittle matrix system than 3900-2 is also analysed. Results of analyses performed under the same impact conditions do not compare as well quantitatively with measurements but the results are still promising and qualitative differences between the T800/3900-2 and IM6/937 are accurately captured. Finally, to further demonstrate the capability of the model, the response of a notched CFRP plate under quasi-static tensile loading is simulated and compared to experimental measurements. Of particular significance is the fact that the experimental test modelled in this case is uniquely suited to the characterization of the strain softening phenomenon observed in FRP laminates. Results of this virtual experiment compare very favourably with the measured damage growth and force-displacement curves.

Ancient numerical daemons of conceptual hydrological modeling: 2. Impact of time stepping schemes on model analysis and prediction

NASA Astrophysics Data System (ADS)

Kavetski, Dmitri; Clark, Martyn P.

2010-10-01

Despite the widespread use of conceptual hydrological models in environmental research and operations, they remain frequently implemented using numerically unreliable methods. This paper considers the impact of the time stepping scheme on model analysis (sensitivity analysis, parameter optimization, and Markov chain Monte Carlo-based uncertainty estimation) and prediction. It builds on the companion paper (Clark and Kavetski, 2010), which focused on numerical accuracy, fidelity, and computational efficiency. Empirical and theoretical analysis of eight distinct time stepping schemes for six different hydrological models in 13 diverse basins demonstrates several critical conclusions. (1) Unreliable time stepping schemes, in particular, fixed-step explicit methods, suffer from troublesome numerical artifacts that severely deform the objective function of the model. These deformations are not rare isolated instances but can arise in any model structure, in any catchment, and under common hydroclimatic conditions. (2) Sensitivity analysis can be severely contaminated by numerical errors, often to the extent that it becomes dominated by the sensitivity of truncation errors rather than the model equations. (3) Robust time stepping schemes generally produce "better behaved" objective functions, free of spurious local optima, and with sufficient numerical continuity to permit parameter optimization using efficient quasi Newton methods. When implemented within a multistart framework, modern Newton-type optimizers are robust even when started far from the optima and provide valuable diagnostic insights not directly available from evolutionary global optimizers. (4) Unreliable time stepping schemes lead to inconsistent and biased inferences of the model parameters and internal states. (5) Even when interactions between hydrological parameters and numerical errors provide "the right result for the wrong reason" and the calibrated model performance appears adequate, unreliable time stepping schemes make the model unnecessarily fragile in predictive mode, undermining validation assessments and operational use. Erroneous or misleading conclusions of model analysis and prediction arising from numerical artifacts in hydrological models are intolerable, especially given that robust numerics are accepted as mainstream in other areas of science and engineering. We hope that the vivid empirical findings will encourage the conceptual hydrological community to close its Pandora's box of numerical problems, paving the way for more meaningful model application and interpretation.

Simplex-based optimization of numerical and categorical inputs in early bioprocess development: Case studies in HT chromatography.

PubMed

Konstantinidis, Spyridon; Titchener-Hooker, Nigel; Velayudhan, Ajoy

2017-08-01

Bioprocess development studies often involve the investigation of numerical and categorical inputs via the adoption of Design of Experiments (DoE) techniques. An attractive alternative is the deployment of a grid compatible Simplex variant which has been shown to yield optima rapidly and consistently. In this work, the method is combined with dummy variables and it is deployed in three case studies wherein spaces are comprised of both categorical and numerical inputs, a situation intractable by traditional Simplex methods. The first study employs in silico data and lays out the dummy variable methodology. The latter two employ experimental data from chromatography based studies performed with the filter-plate and miniature column High Throughput (HT) techniques. The solute of interest in the former case study was a monoclonal antibody whereas the latter dealt with the separation of a binary system of model proteins. The implemented approach prevented the stranding of the Simplex method at local optima, due to the arbitrary handling of the categorical inputs, and allowed for the concurrent optimization of numerical and categorical, multilevel and/or dichotomous, inputs. The deployment of the Simplex method, combined with dummy variables, was therefore entirely successful in identifying and characterizing global optima in all three case studies. The Simplex-based method was further shown to be of equivalent efficiency to a DoE-based approach, represented here by D-Optimal designs. Such an approach failed, however, to both capture trends and identify optima, and led to poor operating conditions. It is suggested that the Simplex-variant is suited to development activities involving numerical and categorical inputs in early bioprocess development. © 2017 The Authors. Biotechnology Journal published by WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Numerical bifurcation analysis of immunological models with time delays

NASA Astrophysics Data System (ADS)

Luzyanina, Tatyana; Roose, Dirk; Bocharov, Gennady

2005-12-01

In recent years, a large number of mathematical models that are described by delay differential equations (DDEs) have appeared in the life sciences. To analyze the models' dynamics, numerical methods are necessary, since analytical studies can only give limited results. In turn, the availability of efficient numerical methods and software packages encourages the use of time delays in mathematical modelling, which may lead to more realistic models. We outline recently developed numerical methods for bifurcation analysis of DDEs and illustrate the use of these methods in the analysis of a mathematical model of human hepatitis B virus infection.

Modeling variably saturated subsurface solute transport with MODFLOW-UZF and MT3DMS

USGS Publications Warehouse

Morway, Eric D.; Niswonger, Richard G.; Langevin, Christian D.; Bailey, Ryan T.; Healy, Richard W.

2013-01-01

The MT3DMS groundwater solute transport model was modified to simulate solute transport in the unsaturated zone by incorporating the unsaturated-zone flow (UZF1) package developed for MODFLOW. The modified MT3DMS code uses a volume-averaged approach in which Lagrangian-based UZF1 fluid fluxes and storage changes are mapped onto a fixed grid. Referred to as UZF-MT3DMS, the linked model was tested against published benchmarks solved analytically as well as against other published codes, most frequently the U.S. Geological Survey's Variably-Saturated Two-Dimensional Flow and Transport Model. Results from a suite of test cases demonstrate that the modified code accurately simulates solute advection, dispersion, and reaction in the unsaturated zone. Two- and three-dimensional simulations also were investigated to ensure unsaturated-saturated zone interaction was simulated correctly. Because the UZF1 solution is analytical, large-scale flow and transport investigations can be performed free from the computational and data burdens required by numerical solutions to Richards' equation. Results demonstrate that significant simulation runtime savings can be achieved with UZF-MT3DMS, an important development when hundreds or thousands of model runs are required during parameter estimation and uncertainty analysis. Three-dimensional variably saturated flow and transport simulations revealed UZF-MT3DMS to have runtimes that are less than one tenth of the time required by models that rely on Richards' equation. Given its accuracy and efficiency, and the wide-spread use of both MODFLOW and MT3DMS, the added capability of unsaturated-zone transport in this familiar modeling framework stands to benefit a broad user-ship.

Numerical Approach to Modeling and Characterization of Refractive Index Changes for a Long-Period Fiber Grating Fabricated by Femtosecond Laser

PubMed Central

Saad, Akram; Cho, Yonghyun; Ahmed, Farid; Jun, Martin Byung-Guk

2016-01-01

A 3D finite element model constructed to predict the intensity-dependent refractive index profile induced by femtosecond laser radiation is presented. A fiber core irradiated by a pulsed laser is modeled as a cylinder subject to predefined boundary conditions using COMSOL5.2 Multiphysics commercial package. The numerically obtained refractive index change is used to numerically design and experimentally fabricate long-period fiber grating (LPFG) in pure silica core single-mode fiber employing identical laser conditions. To reduce the high computational requirements, the beam envelope method approach is utilized in the aforementioned numerical models. The number of periods, grating length, and grating period considered in this work are numerically quantified. The numerically obtained spectral growth of the modeled LPFG seems to be consistent with the transmission of the experimentally fabricated LPFG single mode fiber. The sensing capabilities of the modeled LPFG are tested by varying the refractive index of the surrounding medium. The numerically obtained spectrum corresponding to the varied refractive index shows good agreement with the experimental findings. PMID:28774060

Numerical Approach to Modeling and Characterization of Refractive Index Changes for a Long-Period Fiber Grating Fabricated by Femtosecond Laser.

PubMed

Saad, Akram; Cho, Yonghyun; Ahmed, Farid; Jun, Martin Byung-Guk

2016-11-21

A 3D finite element model constructed to predict the intensity-dependent refractive index profile induced by femtosecond laser radiation is presented. A fiber core irradiated by a pulsed laser is modeled as a cylinder subject to predefined boundary conditions using COMSOL5.2 Multiphysics commercial package. The numerically obtained refractive index change is used to numerically design and experimentally fabricate long-period fiber grating (LPFG) in pure silica core single-mode fiber employing identical laser conditions. To reduce the high computational requirements, the beam envelope method approach is utilized in the aforementioned numerical models. The number of periods, grating length, and grating period considered in this work are numerically quantified. The numerically obtained spectral growth of the modeled LPFG seems to be consistent with the transmission of the experimentally fabricated LPFG single mode fiber. The sensing capabilities of the modeled LPFG are tested by varying the refractive index of the surrounding medium. The numerically obtained spectrum corresponding to the varied refractive index shows good agreement with the experimental findings.

Validation of numerical model for cook stove using Reynolds averaged Navier-Stokes based solver

NASA Astrophysics Data System (ADS)

Islam, Md. Moinul; Hasan, Md. Abdullah Al; Rahman, Md. Mominur; Rahaman, Md. Mashiur

2017-12-01

Biomass fired cook stoves, for many years, have been the main cooking appliance for the rural people of developing countries. Several researches have been carried out to the find efficient stoves. In the present study, numerical model of an improved household cook stove is developed to analyze the heat transfer and flow behavior of gas during operation. The numerical model is validated with the experimental results. Computation of the numerical model is executed the using non-premixed combustion model. Reynold's averaged Navier-Stokes (RaNS) equation along with the κ - ɛ model governed the turbulent flow associated within the computed domain. The computational results are in well agreement with the experiment. Developed numerical model can be used to predict the effect of different biomasses on the efficiency of the cook stove.

Comment on “A similarity solution for laminar thermal boundary layer over a flat plate with a convective surface boundary condition” by A. Aziz, Comm. Nonlinear Sci. Numer. Simul. 2009;14:1064-8

NASA Astrophysics Data System (ADS)

Magyari, Eugen

2011-01-01

In a recent paper published in this Journal the title problem has been investigated numerically. In the present paper the exact solution for the temperature boundary layer is given in terms of the solution of the flow problem (the Blasius problem) in a compact integral form.

Reduction of lithologic-log data to numbers for use in the digital computer

USGS Publications Warehouse

Morgan, C.O.; McNellis, J.M.

1971-01-01

The development of a standardized system for conveniently coding lithologic-log data for use in the digital computer has long been needed. The technique suggested involves a reduction of the original written alphanumeric log to a numeric log by use of computer programs. This numeric log can then be retrieved as a written log, interrogated for pertinent information, or analyzed statistically. ?? 1971 Plenum Publishing Corporation.

Immersed boundary lattice Boltzmann model based on multiple relaxation times

NASA Astrophysics Data System (ADS)

Lu, Jianhua; Han, Haifeng; Shi, Baochang; Guo, Zhaoli

2012-01-01

As an alterative version of the lattice Boltzmann models, the multiple relaxation time (MRT) lattice Boltzmann model introduces much less numerical boundary slip than the single relaxation time (SRT) lattice Boltzmann model if some special relationship between the relaxation time parameters is chosen. On the other hand, most current versions of the immersed boundary lattice Boltzmann method, which was first introduced by Feng and improved by many other authors, suffer from numerical boundary slip as has been investigated by Le and Zhang. To reduce such a numerical boundary slip, an immerse boundary lattice Boltzmann model based on multiple relaxation times is proposed in this paper. A special formula is given between two relaxation time parameters in the model. A rigorous analysis and the numerical experiments carried out show that the numerical boundary slip reduces dramatically by using the present model compared to the single-relaxation-time-based model.

Comparison of software tools for kinetic evaluation of chemical degradation data.

PubMed

Ranke, Johannes; Wöltjen, Janina; Meinecke, Stefan

2018-01-01

For evaluating the fate of xenobiotics in the environment, a variety of degradation or environmental metabolism experiments are routinely conducted. The data generated in such experiments are evaluated by optimizing the parameters of kinetic models in a way that the model simulation fits the data. No comparison of the main software tools currently in use has been published to date. This article shows a comparison of numerical results as well as an overall, somewhat subjective comparison based on a scoring system using a set of criteria. The scoring was separately performed for two types of uses. Uses of type I are routine evaluations involving standard kinetic models and up to three metabolites in a single compartment. Evaluations involving non-standard model components, more than three metabolites or more than a single compartment belong to use type II. For use type I, usability is most important, while the flexibility of the model definition is most important for use type II. Test datasets were assembled that can be used to compare the numerical results for different software tools. These datasets can also be used to ensure that no unintended or erroneous behaviour is introduced in newer versions. In the comparison of numerical results, good agreement between the parameter estimates was observed for datasets with up to three metabolites. For the now unmaintained reference software DegKinManager/ModelMaker, and for OpenModel which is still under development, user options were identified that should be taken care of in order to obtain results that are as reliable as possible. Based on the scoring system mentioned above, the software tools gmkin, KinGUII and CAKE received the best scores for use type I. Out of the 15 software packages compared with respect to use type II, again gmkin and KinGUII were the first two, followed by the script based tool mkin, which is the technical basis for gmkin, and by OpenModel. Based on the evaluation using the system of criteria mentioned above and the comparison of numerical results for the suite of test datasets, the software tools gmkin, KinGUII and CAKE are recommended for use type I, and gmkin and KinGUII for use type II. For users that prefer to work with scripts instead of graphical user interfaces, mkin is recommended. For future software evaluations, it is recommended to include a measure for the total time that a typical user needs for a kinetic evaluation into the scoring scheme. It is the hope of the authors that the publication of test data, source code and overall rankings foster the evolution of useful and reliable software in the field.

Modelling and simulation of biased agonism dynamics at a G protein-coupled receptor.

PubMed

Bridge, L J; Mead, J; Frattini, E; Winfield, I; Ladds, G

2018-04-07

Theoretical models of G protein-coupled receptor (GPCR) concentration-response relationships often assume an agonist producing a single functional response via a single active state of the receptor. These models have largely been analysed assuming steady-state conditions. There is now much experimental evidence to suggest that many GPCRs can exist in multiple receptor conformations and elicit numerous functional responses, with ligands having the potential to activate different signalling pathways to varying extents-a concept referred to as biased agonism, functional selectivity or pluri-dimensional efficacy. Moreover, recent experimental results indicate a clear possibility for time-dependent bias, whereby an agonist's bias with respect to different pathways may vary dynamically. Efforts towards understanding the implications of temporal bias by characterising and quantifying ligand effects on multiple pathways will clearly be aided by extending current equilibrium binding and biased activation models to include G protein activation dynamics. Here, we present a new model of time-dependent biased agonism, based on ordinary differential equations for multiple cubic ternary complex activation models with G protein cycle dynamics. This model allows simulation and analysis of multi-pathway activation bias dynamics at a single receptor for the first time, at the level of active G protein (α GTP ), towards the analysis of dynamic functional responses. The model is generally applicable to systems with N G G proteins and N* active receptor states. Numerical simulations for N G =N * =2 reveal new insights into the effects of system parameters (including cooperativities, and ligand and receptor concentrations) on bias dynamics, highlighting new phenomena including the dynamic inter-conversion of bias direction. Further, we fit this model to 'wet' experimental data for two competing G proteins (G i and G s ) that become activated upon stimulation of the adenosine A 1 receptor with adenosine derivative compounds. Finally, we show that our model can qualitatively describe the temporal dynamics of this competing G protein activation. Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.

The Role of Simulation in Microsurgical Training.

PubMed

Evgeniou, Evgenios; Walker, Harriet; Gujral, Sameer

Simulation has been established as an integral part of microsurgical training. The aim of this study was to assess and categorize the various simulation models in relation to the complexity of the microsurgical skill being taught and analyze the assessment methods commonly employed in microsurgical simulation training. Numerous courses have been established using simulation models. These models can be categorized, according to the level of complexity of the skill being taught, into basic, intermediate, and advanced. Microsurgical simulation training should be assessed using validated assessment methods. Assessment methods vary significantly from subjective expert opinions to self-assessment questionnaires and validated global rating scales. The appropriate assessment method should carefully be chosen based on the simulation modality. Simulation models should be validated, and a model with appropriate fidelity should be chosen according to the microsurgical skill being taught. Assessment should move from traditional simple subjective evaluations of trainee performance to validated tools. Future studies should assess the transferability of skills gained during simulation training to the real-life setting. Copyright © 2018 Association of Program Directors in Surgery. Published by Elsevier Inc. All rights reserved.

ORILAM, a three-moment lognormal aerosol scheme for mesoscale atmospheric model: Online coupling into the Meso-NH-C model and validation on the Escompte campaign

NASA Astrophysics Data System (ADS)

Tulet, Pierre; Crassier, Vincent; Cousin, Frederic; Suhre, Karsten; Rosset, Robert

2005-09-01

Classical aerosol schemes use either a sectional (bin) or lognormal approach. Both approaches have particular capabilities and interests: the sectional approach is able to describe every kind of distribution, whereas the lognormal one makes assumption of the distribution form with a fewer number of explicit variables. For this last reason we developed a three-moment lognormal aerosol scheme named ORILAM to be coupled in three-dimensional mesoscale or CTM models. This paper presents the concept and hypothesis of a range of aerosol processes such as nucleation, coagulation, condensation, sedimentation, and dry deposition. One particular interest of ORILAM is to keep explicit the aerosol composition and distribution (mass of each constituent, mean radius, and standard deviation of the distribution are explicit) using the prediction of three-moment (m0, m3, and m6). The new model was evaluated by comparing simulations to measurements from the Escompte campaign and to a previously published aerosol model. The numerical cost of the lognormal mode is lower than two bins of the sectional one.

Field investigation into unsaturated flow and transport in a fault: Model analyses

USGS Publications Warehouse

Liu, H.-H.; Salve, R.; Wang, J.-S.; Bodvarsson, G.S.; Hudson, D.

2004-01-01

Results of a fault test performed in the unsaturated zone of Yucca Mountain, Nevada, were analyzed using a three-dimensional numerical model. The fault was explicitly represented as a discrete feature and the surrounding rock was treated as a dual-continuum (fracture-matrix) system. Model calibration against seepage and water-travel-velocity data suggests that lithophysal cavities connected to fractures can considerably enhance the effective fracture porosity and therefore retard water flow in fractures. Comparisons between simulation results and tracer concentration data also indicate that matrix diffusion is an important mechanism for solute transport in unsaturated fractured rock. We found that an increased fault-matrix and fracture-matrix interface areas were needed to match the observed tracer data, which is consistent with previous studies. The study results suggest that the current site-scale model for the unsaturated zone of Yucca Mountain may underestimate radionuclide transport time within the unsaturated zone, because an increased fracture-matrix interface area and the increased effective fracture porosity arising from lithophysal cavities are not considered in the current site-scale model. ?? 2004 Published by Elsevier B.V.

Development and application of a hillslope hydrologic model

USGS Publications Warehouse

Blain, C.A.; Milly, P.C.D.

1991-01-01

A vertically integrated two-dimensional lateral flow model of soil moisture has been developed. Derivation of the governing equation is based on a physical interpretation of hillslope processes. The lateral subsurface-flow model permits variability of precipitation and evapotranspiration, and allows arbitrary specification of soil-moisture retention properties. Variable slope, soil thickness, and saturation are all accommodated. The numerical solution method, a Crank-Nicolson, finite-difference, upstream-weighted scheme, is simple and robust. A small catchment in northeastern Kansas is the subject of an application of the lateral subsurface-flow model. Calibration of the model using observed discharge provides estimates of the active porosity (0.1 cm3/cm3) and of the saturated horizontal hydraulic conductivity (40 cm/hr). The latter figure is at least an order of magnitude greater than the vertical hydraulic conductivity associated with the silty clay loam soil matrix. The large value of hydraulic conductivity derived from the calibration is suggestive of macropore-dominated hillslope drainage. The corresponding value of active porosity agrees well with a published average value of the difference between total porosity and field capacity for a silty clay loam. ?? 1991.

Influence of wall couple stress in MHD flow of a micropolar fluid in a porous medium with energy and concentration transfer

NASA Astrophysics Data System (ADS)

Khalid, Asma; Khan, Ilyas; Khan, Arshad; Shafie, Sharidan

2018-06-01

The intention here is to investigate the effects of wall couple stress with energy and concentration transfer in magnetohydrodynamic (MHD) flow of a micropolar fluid embedded in a porous medium. The mathematical model contains the set of linear conservation forms of partial differential equations. Laplace transforms and convolution technique are used for computation of exact solutions of velocity, microrotations, temperature and concentration equations. Numerical values of skin friction, couple wall stress, Nusselt and Sherwood numbers are also computed. Characteristics for the significant variables on the physical quantities are graphically discussed. Comparison with previously published work in limiting sense shows an excellent agreement.

Increasing seismicity in the U. S. midcontinent: Implications for earthquake hazard

USGS Publications Warehouse

Ellsworth, William L.; Llenos, Andrea L.; McGarr, Arthur F.; Michael, Andrew J.; Rubinstein, Justin L.; Mueller, Charles S.; Petersen, Mark D.; Calais, Eric

2015-01-01

Earthquake activity in parts of the central United States has increased dramatically in recent years. The space-time distribution of the increased seismicity, as well as numerous published case studies, indicates that the increase is of anthropogenic origin, principally driven by injection of wastewater coproduced with oil and gas from tight formations. Enhanced oil recovery and long-term production also contribute to seismicity at a few locations. Preliminary hazard models indicate that areas experiencing the highest rate of earthquakes in 2014 have a short-term (one-year) hazard comparable to or higher than the hazard in the source region of tectonic earthquakes in the New Madrid and Charleston seismic zones.

Impulsive synchronization of stochastic reaction-diffusion neural networks with mixed time delays.

PubMed

Sheng, Yin; Zeng, Zhigang

2018-07-01

This paper discusses impulsive synchronization of stochastic reaction-diffusion neural networks with Dirichlet boundary conditions and hybrid time delays. By virtue of inequality techniques, theories of stochastic analysis, linear matrix inequalities, and the contradiction method, sufficient criteria are proposed to ensure exponential synchronization of the addressed stochastic reaction-diffusion neural networks with mixed time delays via a designed impulsive controller. Compared with some recent studies, the neural network models herein are more general, some restrictions are relaxed, and the obtained conditions enhance and generalize some published ones. Finally, two numerical simulations are performed to substantiate the validity and merits of the developed theoretical analysis. Copyright © 2018 Elsevier Ltd. All rights reserved.

Algebraic expressions for the polarisation response of spin-VCSELs

NASA Astrophysics Data System (ADS)

Adams, Mike; Li, Nianqiang; Cemlyn, Ben; Susanto, Hadi; Henning, Ian

2018-06-01

Closed-form expressions are derived for the relationship between the polarisation of the output and that of the pump for spin-polarised vertical-cavity surface-emitting lasers. These expressions are based on the spin-flip model (SFM) combined with the condition that the carrier recombination time is much greater than both the spin relaxation time and the photon lifetime. Allowance is also included for misalignment between the principal axes of birefringence and dichroism. These expressions yield results that are in excellent agreement both with previously published numerical calculations and with further tests for a wide range of parameters. Trends with key parameters of the SFM are easily deduced from these expressions.

Study of grid independence of finite element method on MHD free convective casson fluid flow with slip effect

NASA Astrophysics Data System (ADS)

Raju, R. Srinivasa; Ramesh, K.

2018-05-01

The purpose of this work is to study the grid independence of finite element method on MHD Casson fluid flow past a vertically inclined plate filled in a porous medium in presence of chemical reaction, heat absorption, an external magnetic field and slip effect has been investigated. For this study of grid independence, a mathematical model is developed and analyzed by using appropriate mathematical technique, called finite element method. Grid study discussed with the help of numerical values of velocity, temperature and concentration profiles in tabular form. avourable comparisons with previously published work on various special cases of the problem are obtained.

Split-field FDTD method for oblique incidence study of periodic dispersive metallic structures.

PubMed

Baida, F I; Belkhir, A

2009-08-15

The study of periodic structures illuminated by a normally incident plane wave is a simple task that can be numerically simulated by the finite-difference time-domain (FDTD) method. On the contrary, for off-normal incidence, a widely modified algorithm must be developed in order to bypass the frequency dependence appearing in the periodic boundary conditions. After recently implementing this FDTD algorithm for pure dielectric materials, we here extend it to the study of metallic structures where dispersion can be described by analytical models. The accuracy of our code is demonstrated through comparisons with already-published results in the case of 1D and 3D structures.

Toward Scientific Numerical Modeling

NASA Technical Reports Server (NTRS)

Kleb, Bil

2007-01-01

Ultimately, scientific numerical models need quantified output uncertainties so that modeling can evolve to better match reality. Documenting model input uncertainties and verifying that numerical models are translated into code correctly, however, are necessary first steps toward that goal. Without known input parameter uncertainties, model sensitivities are all one can determine, and without code verification, output uncertainties are simply not reliable. To address these two shortcomings, two proposals are offered: (1) an unobtrusive mechanism to document input parameter uncertainties in situ and (2) an adaptation of the Scientific Method to numerical model development and deployment. Because these two steps require changes in the computational simulation community to bear fruit, they are presented in terms of the Beckhard-Harris-Gleicher change model.

Validation of a numerical method for interface-resolving simulation of multicomponent gas-liquid mass transfer and evaluation of multicomponent diffusion models

NASA Astrophysics Data System (ADS)

Woo, Mino; Wörner, Martin; Tischer, Steffen; Deutschmann, Olaf

2018-03-01

The multicomponent model and the effective diffusivity model are well established diffusion models for numerical simulation of single-phase flows consisting of several components but are seldom used for two-phase flows so far. In this paper, a specific numerical model for interfacial mass transfer by means of a continuous single-field concentration formulation is combined with the multicomponent model and effective diffusivity model and is validated for multicomponent mass transfer. For this purpose, several test cases for one-dimensional physical or reactive mass transfer of ternary mixtures are considered. The numerical results are compared with analytical or numerical solutions of the Maxell-Stefan equations and/or experimental data. The composition-dependent elements of the diffusivity matrix of the multicomponent and effective diffusivity model are found to substantially differ for non-dilute conditions. The species mole fraction or concentration profiles computed with both diffusion models are, however, for all test cases very similar and in good agreement with the analytical/numerical solutions or measurements. For practical computations, the effective diffusivity model is recommended due to its simplicity and lower computational costs.

Interoperability of Neuroscience Modeling Software

PubMed Central

Cannon, Robert C.; Gewaltig, Marc-Oliver; Gleeson, Padraig; Bhalla, Upinder S.; Cornelis, Hugo; Hines, Michael L.; Howell, Fredrick W.; Muller, Eilif; Stiles, Joel R.; Wils, Stefan; De Schutter, Erik

2009-01-01

Neuroscience increasingly uses computational models to assist in the exploration and interpretation of complex phenomena. As a result, considerable effort is invested in the development of software tools and technologies for numerical simulations and for the creation and publication of models. The diversity of related tools leads to the duplication of effort and hinders model reuse. Development practices and technologies that support interoperability between software systems therefore play an important role in making the modeling process more efficient and in ensuring that published models can be reliably and easily reused. Various forms of interoperability are possible including the development of portable model description standards, the adoption of common simulation languages or the use of standardized middleware. Each of these approaches finds applications within the broad range of current modeling activity. However more effort is required in many areas to enable new scientific questions to be addressed. Here we present the conclusions of the “Neuro-IT Interoperability of Simulators” workshop, held at the 11th computational neuroscience meeting in Edinburgh (July 19-20 2006; http://www.cnsorg.org). We assess the current state of interoperability of neural simulation software and explore the future directions that will enable the field to advance. PMID:17873374

Neuronvisio: A Graphical User Interface with 3D Capabilities for NEURON.

PubMed

Mattioni, Michele; Cohen, Uri; Le Novère, Nicolas

2012-01-01

The NEURON simulation environment is a commonly used tool to perform electrical simulation of neurons and neuronal networks. The NEURON User Interface, based on the now discontinued InterViews library, provides some limited facilities to explore models and to plot their simulation results. Other limitations include the inability to generate a three-dimensional visualization, no standard mean to save the results of simulations, or to store the model geometry within the results. Neuronvisio (http://neuronvisio.org) aims to address these deficiencies through a set of well designed python APIs and provides an improved UI, allowing users to explore and interact with the model. Neuronvisio also facilitates access to previously published models, allowing users to browse, download, and locally run NEURON models stored in ModelDB. Neuronvisio uses the matplotlib library to plot simulation results and uses the HDF standard format to store simulation results. Neuronvisio can be viewed as an extension of NEURON, facilitating typical user workflows such as model browsing, selection, download, compilation, and simulation. The 3D viewer simplifies the exploration of complex model structure, while matplotlib permits the plotting of high-quality graphs. The newly introduced ability of saving numerical results allows users to perform additional analysis on their previous simulations.

An in-depth analysis of temperature effect on DIBL in UTBB FD SOI MOSFETs based on experimental data, numerical simulations and analytical models

NASA Astrophysics Data System (ADS)

Pereira, A. S. N.; de Streel, G.; Planes, N.; Haond, M.; Giacomini, R.; Flandre, D.; Kilchytska, V.

2017-02-01

The Drain Induced Barrier Lowering (DIBL) behavior in Ultra-Thin Body and Buried oxide (UTBB) transistors is investigated in details in the temperature range up to 150 °C, for the first time to the best of our knowledge. The analysis is based on experimental data, physical device simulation, compact model (SPICE) simulation and previously published models. Contrary to MASTAR prediction, experiments reveal DIBL increase with temperature. Physical device simulations of different thin-film fully-depleted (FD) devices outline the generality of such behavior. SPICE simulations, with UTSOI DK2.4 model, only partially adhere to experimental trends. Several analytic models available in the literature are assessed for DIBL vs. temperature prediction. Although being the closest to experiments, Fasarakis' model overestimates DIBL(T) dependence for shortest devices and underestimates it for upsized gate lengths frequently used in ultra-low-voltage (ULV) applications. This model is improved in our work, by introducing a temperature-dependent inversion charge at threshold. The improved model shows very good agreement with experimental data, with high gain in precision for the gate lengths under test.

Numerical simulation of CTE mismatch and thermal-structural stresses in the design of interconnects

NASA Astrophysics Data System (ADS)

Peter, Geoffrey John M.

With the ever-increasing chip complexity, interconnects have to be designed to meet the new challenges. Advances in optical lithography have made chip feature sizes available today at 70 nm dimensions. With advances in Extreme Ultraviolet Lithography, X-ray Lithography, and Ion Projection Lithography it is expected that the line width will further decrease to 20 nm or less. With the decrease in feature size, the number of active devices on the chip increases. With higher levels of circuit integration, the challenge is to dissipate the increased heat flux from the chip surface area. Thermal management considerations include coefficient of thermal expansion (CTE) matching to prevent failure between the chip and the board. This in turn calls for improved system performance and reliability of the electronic structural systems. Experience has shown that in most electronic systems, failures are mostly due to CTE mismatch between the chip, board, and the solder joint (solder interconnect). The resulting high thermal-structural stress and strain due to CTE mismatch produces cracks in the solder joints with eventual failure of the electronic component. In order to reduce the thermal stress between the chip, board, and the solder joint, this dissertation examines the effect of inserting wire bundle (wire interconnect) between the chip and the board. The flexibility of the wires or fibers would reduce the stress at the rigid joints. Numerical simulations of two, and three-dimensional models of the solder and wire interconnects are examined. The numerical simulation is linear in nature and is based on linear isotropic material properties. The effect of different wire material properties is examined. The effect of varying the wire diameter is studied by changing the wire diameter. A major cause of electronic equipment failure is due to fatigue failure caused by thermal cycling, and vibrations. A two-dimensional modal and harmonic analysis was simulated for the wire interconnect and the solder interconnect. The numerical model simulated using ANSYS program was validated with the numerical/experimental results of other published researchers. In addition the results were cross-checked by IDEAS program. A prototype non-working wire interconnect is proposed to emphasize practical application. The numerical analysis, in this dissertation is based on a U.S. Patent granted to G. Peter(42).

Modeling and Measuring the Effects of Radiation Damage Annealing on Helium Diffusion Kinetics in Apatite

NASA Astrophysics Data System (ADS)

Willett, C. D.; Fox, M.; Shuster, D. L.

2016-12-01

Understanding helium diffusion kinetics in apatite is critical for the accurate interpretation of (U-Th)/He thermochronometric data. This problem is complicated by the observation that helium diffusivity is not a simple function of temperature, but may evolve as a function of damage to the apatite crystal lattice resulting from alpha recoil. This `radiation damage' increases as a function of the amount of radiometric parent products, or effective uranium concentration, and time, but decreases due to thermal annealing of damage, necessitating a detailed understanding of radiation damage production and annealing in cases of burial heating over geologic timescales. Published observations [1,2] suggest that annealing rates of damage caused by alpha recoil and fission tracks in apatite differ. Existing models, however, assume the diffusion kinetics resulting from the two sources of damage are identical [3], demonstrating the need for further investigation of these damage sources. We present modeling and experimental work designed to interrogate the effects of radiation damage and its annealing on helium diffusion kinetics in apatite. Using previously published results [4] that investigated the effects of annealing temperature and duration on measured helium diffusivity, we fit a set of functions that are then integrated into a numerical model that tracks the evolution of radiation damage and apparent (U-Th)/He age. We compare the results of this model calibration to existing models [3]. In addition, we present data from two suites of diffusion experiments. The first suite, intended to test the published methodology and results, uses Durango apatite, while the second uses Sierran (CA) granite as a first test to determine if apatite of varying chemistry and age responds differently to the thermal annealing of radiation damage. Ultimately, the updated model and experimental results will benefit the interpretation of the effects of radiation damage accumulation and annealing in apatite and expand the range of geologic settings that can be studied using low-temperature thermochronology. References: [1] Fox, M., Shuster, D. (2014), EPSL 397, 174-183; [2] Gautheron, C. et al. (2013), Chem. Geol. 351, 257-267; [3] Flowers, R. et al. (2009), GCA 73, 2347-2365; [4] Shuster, D., Farley, K. (2009), GCA 73, 6183-6196.

Vertical Distribution of Radiation Stress for Non-linear Shoaling Waves

NASA Astrophysics Data System (ADS)

Webb, B. M.; Slinn, D. N.

2004-12-01

The flux of momentum directed shoreward by an incident wave field, commonly referred to as the radiation stress, plays a significant role in nearshore circulation and, therefore, has a profound impact on the transport of pollutants, biota, and sediment in nearshore systems. Having received much attention since the seminal work of Longuet-Higgins and Stewart in the early 1960's, use of the radiation stress concept continues to be refined and evidence of its utility is widespread in literature pertaining to coastal and ocean science. A number of investigations, both numerical and analytical in nature, have used the concept of the radiation stress to derive appropriate forcing mechanisms that initiate cross-shore and longshore circulation, but typically in a depth-averaged sense due to a lack of information concerning the vertical distribution of the wave stresses. While depth-averaged nearshore circulation models are still widely used today, advancements in technology have permitted the adaptation of three-dimensional (3D) modeling techniques to study flow properties of complex nearshore circulation systems. It has been shown that the resulting circulation in these 3D models is very sensitive to the vertical distribution of the nearshore forcing, which have often been implemented as either depth-uniform or depth-linear distributions. Recently, analytical expressions describing the vertical structure of radiation stress components have appeared in the literature (see Mellor, 2003; Xia et al., 2004) but do not fully describe the magnitude and structure in the region bound by the trough and crest of non-linear, propagating waves. Utilizing a three-dimensional, non-linear, numerical model that resolves the time-dependent free surface, we present mean flow properties resulting from a simulation of Visser's (1984, 1991) laboratory experiment on uniform longshore currents. More specifically, we provide information regarding the vertical distribution of radiation stress components (Sxx and Sxy) resulting from obliquely incident, non-linear shoaling waves. Vertical profiles of the radiation stress components predicted by the numerical model are compared with published analytical solutions, expressions given by linear theory, and observations from an investigation employing second-order cnoidal wave theory.

How different is the time-averaged field from that of a geocentric axial dipole ? Making the best of paleomagnetic directional data using the statistical Giant Gaussian Process approach.

NASA Astrophysics Data System (ADS)

Hulot, G.; Khokhlov, A.; Johnson, C. L.

2012-12-01

It is well known that the geometry of the recent time-averaged paleomagnetic field (TAF) is very close to that of a geocentric axial dipole (GAD). Yet, numerous numerical dynamo simulations show that some departures from such a simple geometry is to be expected, not least because of the heterogeneous thermal core-mantle boundary conditions that the convecting mantle imposes on the geodynamo. Indeed, many TAF models recovered from averaging lava flow paleomagnetic directional data (the most numerous and reliable of all data) would suggest this is the case. However, assessing the significance of such minor departures from the GAD is particularly challenging, because non-linear directional data are sensitive not only to the time-averaged component of the field, but also to its time fluctuating component, known as the paleosecular variation (PSV). This means that in addition to data errors, PSV also must be taken into account when assessing any lava flow directional data based claims of departures of the TAF from the GAD. Furthermore, because of limited age information for these data , it is necessary to assess departures from the GAD by resorting to a statistical approach. We report recent progress using an approach we have suggested and further developed (Khokhlov et al., Geophysical Journal International, 2001, 2006) to test the compatibility of combined time-averaged (TAF) and paleosecular variation (PSV) field models, against any lava flow paleomagnetic database, asssuming that these TAF and PSV models are defined within the Giant Gaussian Process statistical framework. In particular we will show how sensitive statistical measures of the compatibility of a combined set of TAF and PSV models with a given directional database can be defined. These measures can be used to test published TAF and PSV models with updated 0-5 Ma lava flow paleomagnetic data sets. They also lay the groundwork for designing inverse methods better suited to seek the minimum required departure of the TAF from the GAD.

Nonspinning numerical relativity waveform surrogates: assessing the model

NASA Astrophysics Data System (ADS)

Field, Scott; Blackman, Jonathan; Galley, Chad; Scheel, Mark; Szilagyi, Bela; Tiglio, Manuel

2015-04-01

Recently, multi-modal gravitational waveform surrogate models have been built directly from data numerically generated by the Spectral Einstein Code (SpEC). I will describe ways in which the surrogate model error can be quantified. This task, in turn, requires (i) characterizing differences between waveforms computed by SpEC with those predicted by the surrogate model and (ii) estimating errors associated with the SpEC waveforms from which the surrogate is built. Both pieces can have numerous sources of numerical and systematic errors. We make an attempt to study the most dominant error sources and, ultimately, the surrogate model's fidelity. These investigations yield information about the surrogate model's uncertainty as a function of time (or frequency) and parameter, and could be useful in parameter estimation studies which seek to incorporate model error. Finally, I will conclude by comparing the numerical relativity surrogate model to other inspiral-merger-ringdown models. A companion talk will cover the building of multi-modal surrogate models.

Ancient numerical daemons of conceptual hydrological modeling: 1. Fidelity and efficiency of time stepping schemes

NASA Astrophysics Data System (ADS)

Clark, Martyn P.; Kavetski, Dmitri

2010-10-01

A major neglected weakness of many current hydrological models is the numerical method used to solve the governing model equations. This paper thoroughly evaluates several classes of time stepping schemes in terms of numerical reliability and computational efficiency in the context of conceptual hydrological modeling. Numerical experiments are carried out using 8 distinct time stepping algorithms and 6 different conceptual rainfall-runoff models, applied in a densely gauged experimental catchment, as well as in 12 basins with diverse physical and hydroclimatic characteristics. Results show that, over vast regions of the parameter space, the numerical errors of fixed-step explicit schemes commonly used in hydrology routinely dwarf the structural errors of the model conceptualization. This substantially degrades model predictions, but also, disturbingly, generates fortuitously adequate performance for parameter sets where numerical errors compensate for model structural errors. Simply running fixed-step explicit schemes with shorter time steps provides a poor balance between accuracy and efficiency: in some cases daily-step adaptive explicit schemes with moderate error tolerances achieved comparable or higher accuracy than 15 min fixed-step explicit approximations but were nearly 10 times more efficient. From the range of simple time stepping schemes investigated in this work, the fixed-step implicit Euler method and the adaptive explicit Heun method emerge as good practical choices for the majority of simulation scenarios. In combination with the companion paper, where impacts on model analysis, interpretation, and prediction are assessed, this two-part study vividly highlights the impact of numerical errors on critical performance aspects of conceptual hydrological models and provides practical guidelines for robust numerical implementation.

The design and pre-clinical evaluation of knee replacements for osteoarthritis.

PubMed

Walker, Peter S

2015-03-18

One of the concepts that Rik Huiskes promoted was that implants such as knee and hip replacements could be analyzed and optimized using numerical models such as finite element analysis, or by experimental testing, an area he called pre-clinical testing. The design itself could be formulated or improved by defining a specific goal or asking a key question. These propositions are examined in the light of almost five decades of experience with knee implants. Achieving the required laxity and stability, was achieved by attempting to reproduce anatomical values by suitable radii of curvature and selective ligament retention. Obtaining durable fixation was based on testing many configurations to obtain the most uniform stress distribution at the implant-bone interface. Achieving the best overall kinematics has yet to be fully solved due to the variations in activities and patients. These and many other factors have usually been addressed individually rather than as a composite, although as time has gone on, successful features have gradually been assimilated into most designs. But even a systematic approach has been flawed because some unrecognized response was not accounted for in the pre-clinical model, a limitation of models in general. In terms of the design process, so far no method has emerged for systematically reaching an optimal solution from all aspects, although this is possible in principle. Overall however, predictive numerical or physical models should be an essential element in the design of new or improved knee replacements, a part of the design process itself. Copyright © 2015. Published by Elsevier Ltd.

Design of robust reliable control for T-S fuzzy Markovian jumping delayed neutral type neural networks with probabilistic actuator faults and leakage delays: An event-triggered communication scheme.

PubMed

Syed Ali, M; Vadivel, R; Saravanakumar, R

2018-06-01

This study examines the problem of robust reliable control for Takagi-Sugeno (T-S) fuzzy Markovian jumping delayed neural networks with probabilistic actuator faults and leakage terms. An event-triggered communication scheme. First, the randomly occurring actuator faults and their failures rates are governed by two sets of unrelated random variables satisfying certain probabilistic failures of every actuator, new type of distribution based event triggered fault model is proposed, which utilize the effect of transmission delay. Second, Takagi-Sugeno (T-S) fuzzy model is adopted for the neural networks and the randomness of actuators failures is modeled in a Markov jump model framework. Third, to guarantee the considered closed-loop system is exponential mean square stable with a prescribed reliable control performance, a Markov jump event-triggered scheme is designed in this paper, which is the main purpose of our study. Fourth, by constructing appropriate Lyapunov-Krasovskii functional, employing Newton-Leibniz formulation and integral inequalities, several delay-dependent criteria for the solvability of the addressed problem are derived. The obtained stability criteria are stated in terms of linear matrix inequalities (LMIs), which can be checked numerically using the effective LMI toolbox in MATLAB. Finally, numerical examples are given to illustrate the effectiveness and reduced conservatism of the proposed results over the existing ones, among them one example was supported by real-life application of the benchmark problem. Copyright © 2018 ISA. Published by Elsevier Ltd. All rights reserved.

An overview of available crop growth and yield models for studies and assessments in agriculture.

PubMed

Di Paola, Arianna; Valentini, Riccardo; Santini, Monia

2016-02-01

The scientific community offers numerous crop models with different levels of sophistication. In such a wide range of crop models, users should have the possibility to choose the most suitable, in terms of detail, scale and representativeness, to their objectives. However, even when an appropriate choice is made, model limitations should be clarified such that modelling studies are put in the proper perspective and robust applications are achieved. This work is an overview of available models to simulate crop growth and yield. A summary matrix with more than 70 crop models is provided, storing the main model characteristics that can help users to choose the proper tool according to their purposes. Overall, we found that two main aspects of models, despite their importance, are not always clear from the published references, i.e. the versatility of the models, in terms of reliable transferability to different conditions, and the degree of complexity. Hence, the developers of models should be encouraged to pay more attention to clarifying the model limitations and limits of applicability, and users should make an effort in proper model selection, to save time often devoted to iteration of tuning steps to force an inappropriate model to be adapted to their own purpose. © 2015 Society of Chemical Industry.

Numeric simulation model for long-term orthodontic tooth movement with contact boundary conditions using the finite element method.

PubMed

Hamanaka, Ryo; Yamaoka, Satoshi; Anh, Tuan Nguyen; Tominaga, Jun-Ya; Koga, Yoshiyuki; Yoshida, Noriaki

2017-11-01

Although many attempts have been made to simulate orthodontic tooth movement using the finite element method, most were limited to analyses of the initial displacement in the periodontal ligament and were insufficient to evaluate the effect of orthodontic appliances on long-term tooth movement. Numeric simulation of long-term tooth movement was performed in some studies; however, neither the play between the brackets and archwire nor the interproximal contact forces were considered. The objectives of this study were to simulate long-term orthodontic tooth movement with the edgewise appliance by incorporating those contact conditions into the finite element model and to determine the force system when the space is closed with sliding mechanics. We constructed a 3-dimensional model of maxillary dentition with 0.022-in brackets and 0.019 × 0.025-in archwire. Forces of 100 cN simulating sliding mechanics were applied. The simulation was accomplished on the assumption that bone remodeling correlates with the initial tooth displacement. This method could successfully represent the changes in the moment-to-force ratio: the tooth movement pattern during space closure. We developed a novel method that could simulate the long-term orthodontic tooth movement and accurately determine the force system in the course of time by incorporating contact boundary conditions into finite element analysis. It was also suggested that friction is progressively increased during space closure in sliding mechanics. Copyright © 2017. Published by Elsevier Inc.

Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family.

PubMed

Dash, Sudhansu; Campbell, Jacqueline D; Cannon, Ethalinda K S; Cleary, Alan M; Huang, Wei; Kalberer, Scott R; Karingula, Vijay; Rice, Alex G; Singh, Jugpreet; Umale, Pooja E; Weeks, Nathan T; Wilkey, Andrew P; Farmer, Andrew D; Cannon, Steven B

2016-01-04

Legume Information System (LIS), at http://legumeinfo.org, is a genomic data portal (GDP) for the legume family. LIS provides access to genetic and genomic information for major crop and model legumes. With more than two-dozen domesticated legume species, there are numerous specialists working on particular species, and also numerous GDPs for these species. LIS has been redesigned in the last three years both to better integrate data sets across the crop and model legumes, and to better accommodate specialized GDPs that serve particular legume species. To integrate data sets, LIS provides genome and map viewers, holds synteny mappings among all sequenced legume species and provides a set of gene families to allow traversal among orthologous and paralogous sequences across the legumes. To better accommodate other specialized GDPs, LIS uses open-source GMOD components where possible, and advocates use of common data templates, formats, schemas and interfaces so that data collected by one legume research community are accessible across all legume GDPs, through similar interfaces and using common APIs. This federated model for the legumes is managed as part of the 'Legume Federation' project (accessible via http://legumefederation.org), which can be thought of as an umbrella project encompassing LIS and other legume GDPs. Published by Oxford University Press on behalf of Nucleic Acids Research 2015. This work is written by (a) US Government employee(s) and is in the public domain in the US.

On vertical advection truncation errors in terrain-following numerical models: Comparison to a laboratory model for upwelling over submarine canyons

NASA Astrophysics Data System (ADS)

Allen, S. E.; Dinniman, M. S.; Klinck, J. M.; Gorby, D. D.; Hewett, A. J.; Hickey, B. M.

2003-01-01

Submarine canyons which indent the continental shelf are frequently regions of steep (up to 45°), three-dimensional topography. Recent observations have delineated the flow over several submarine canyons during 2-4 day long upwelling episodes. Thus upwelling episodes over submarine canyons provide an excellent flow regime for evaluating numerical and physical models. Here we compare a physical and numerical model simulation of an upwelling event over a simplified submarine canyon. The numerical model being evaluated is a version of the S-Coordinate Rutgers University Model (SCRUM). Careful matching between the models is necessary for a stringent comparison. Results show a poor comparison for the homogeneous case due to nonhydrostatic effects in the laboratory model. Results for the stratified case are better but show a systematic difference between the numerical results and laboratory results. This difference is shown not to be due to nonhydrostatic effects. Rather, the difference is due to truncation errors in the calculation of the vertical advection of density in the numerical model. The calculation is inaccurate due to the terrain-following coordinates combined with a strong vertical gradient in density, vertical shear in the horizontal velocity and topography with strong curvature.

Practical limitations on the use of diurnal temperature signals to quantify groundwater upwelling

USGS Publications Warehouse

Briggs, Martin A.; Lautz, Laura K.; Buckley, Sean F.; Lane, John W.

2014-01-01

Groundwater upwelling to streams creates unique habitat by influencing stream water quality and temperature; upwelling zones also serve as vectors for contamination when groundwater is degraded. Temperature time series data acquired along vertical profiles in the streambed have been applied to simple analytical models to determine rates of vertical fluid flux. These models are based on the downward propagation characteristics (amplitude attenuation and phase-lag) of the surface diurnal signal. Despite the popularity of these models, there are few published characterizations of moderate-to-strong upwelling. We attribute this limitation to the thermodynamics of upwelling, under which the downward conductive signal transport from the streambed interface occurs opposite the upward advective fluid flux. Governing equations describing the advection–diffusion of heat within the streambed predict that under upwelling conditions, signal amplitude attenuation will increase, but, counterintuitively, phase-lag will decrease. Therefore the extinction (measurable) depth of the diurnal signal is very shallow, but phase lag is also short, yielding low signal to noise ratio and poor model sensitivity. Conversely, amplitude attenuation over similar sensor spacing is strong, yielding greater potential model sensitivity. Here we present streambed thermal time series over a range of moderate to strong upwelling sites in the Quashnet River, Cape Cod, Massachusetts. The predicted inverse relationship between phase-lag and rate of upwelling was observed in the field data over a range of conditions, but the observed phase-lags were consistently shorter than predicted. Analytical solutions for fluid flux based on signal amplitude attenuation return results consistent with numerical models and physical seepage meters, but the phase-lag analytical model results are generally unreasonable. Through numerical modeling we explore reasons why phase-lag may have been over-predicted by the analytical models, and develop guiding relations of diurnal temperature signal extinction depth based on stream diurnal signal amplitude, upwelling magnitude, and streambed thermal properties that will be useful in designing future experiments.

Cross-disciplinary links in environmental systems science: Current state and claimed needs identified in a meta-review of process models.

PubMed

Ayllón, Daniel; Grimm, Volker; Attinger, Sabine; Hauhs, Michael; Simmer, Clemens; Vereecken, Harry; Lischeid, Gunnar

2018-05-01

Terrestrial environmental systems are characterised by numerous feedback links between their different compartments. However, scientific research is organized into disciplines that focus on processes within the respective compartments rather than on interdisciplinary links. Major feedback mechanisms between compartments might therefore have been systematically overlooked so far. Without identifying these gaps, initiatives on future comprehensive environmental monitoring schemes and experimental platforms might fail. We performed a comprehensive overview of feedbacks between compartments currently represented in environmental sciences and explores to what degree missing links have already been acknowledged in the literature. We focused on process models as they can be regarded as repositories of scientific knowledge that compile findings of numerous single studies. In total, 118 simulation models from 23 model types were analysed. Missing processes linking different environmental compartments were identified based on a meta-review of 346 published reviews, model intercomparison studies, and model descriptions. Eight disciplines of environmental sciences were considered and 396 linking processes were identified and ascribed to the physical, chemical or biological domain. There were significant differences between model types and scientific disciplines regarding implemented interdisciplinary links. The most wide-spread interdisciplinary links were between physical processes in meteorology, hydrology and soil science that drive or set the boundary conditions for other processes (e.g., ecological processes). In contrast, most chemical and biological processes were restricted to links within the same compartment. Integration of multiple environmental compartments and interdisciplinary knowledge was scarce in most model types. There was a strong bias of suggested future research foci and model extensions towards reinforcing existing interdisciplinary knowledge rather than to open up new interdisciplinary pathways. No clear pattern across disciplines exists with respect to suggested future research efforts. There is no evidence that environmental research would clearly converge towards more integrated approaches or towards an overarching environmental systems theory. Copyright © 2017 Elsevier B.V. All rights reserved.

Validation of Model Forecasts of the Ambient Solar Wind

NASA Technical Reports Server (NTRS)

Macneice, P. J.; Hesse, M.; Kuznetsova, M. M.; Rastaetter, L.; Taktakishvili, A.

2009-01-01

Independent and automated validation is a vital step in the progression of models from the research community into operational forecasting use. In this paper we describe a program in development at the CCMC to provide just such a comprehensive validation for models of the ambient solar wind in the inner heliosphere. We have built upon previous efforts published in the community, sharpened their definitions, and completed a baseline study. We also provide first results from this program of the comparative performance of the MHD models available at the CCMC against that of the Wang-Sheeley-Arge (WSA) model. An important goal of this effort is to provide a consistent validation to all available models. Clearly exposing the relative strengths and weaknesses of the different models will enable forecasters to craft more reliable ensemble forecasting strategies. Models of the ambient solar wind are developing rapidly as a result of improvements in data supply, numerical techniques, and computing resources. It is anticipated that in the next five to ten years, the MHD based models will supplant semi-empirical potential based models such as the WSA model, as the best available forecast models. We anticipate that this validation effort will track this evolution and so assist policy makers in gauging the value of past and future investment in modeling support.

Parabolized Navier-Stokes Code for Computing Magneto-Hydrodynamic Flowfields

NASA Technical Reports Server (NTRS)

Mehta, Unmeel B. (Technical Monitor); Tannehill, J. C.

2003-01-01

This report consists of two published papers, 'Computation of Magnetohydrodynamic Flows Using an Iterative PNS Algorithm' and 'Numerical Simulation of Turbulent MHD Flows Using an Iterative PNS Algorithm'.

A constitutive model and numerical simulation of sintering processes at macroscopic level

NASA Astrophysics Data System (ADS)

Wawrzyk, Krzysztof; Kowalczyk, Piotr; Nosewicz, Szymon; Rojek, Jerzy

2018-01-01

This paper presents modelling of both single and double-phase powder sintering processes at the macroscopic level. In particular, its constitutive formulation, numerical implementation and numerical tests are described. The macroscopic constitutive model is based on the assumption that the sintered material is a continuous medium. The parameters of the constitutive model for material under sintering are determined by simulation of sintering at the microscopic level using a micro-scale model. Numerical tests were carried out for a cylindrical specimen under hydrostatic and uniaxial pressure. Results of macroscopic analysis are compared against the microscopic model results. Moreover, numerical simulations are validated by comparison with experimental results. The simulations and preparation of the model are carried out by Abaqus FEA - a software for finite element analysis and computer-aided engineering. A mechanical model is defined by the user procedure "Vumat" which is developed by the first author in Fortran programming language. Modelling presented in the paper can be used to optimize and to better understand the process.

Stomatal Opening: The Role of Cell-Wall Mechanical Anisotropy and Its Analytical Relations to the Bio-composite Characteristics

PubMed Central

Marom, Ziv; Shtein, Ilana; Bar-On, Benny

2017-01-01

Stomata are pores on the leaf surface, which are formed by a pair of curved, tubular guard cells; an increase in turgor pressure deforms the guard cells, resulting in the opening of the stomata. Recent studies employed numerical simulations, based on experimental data, to analyze the effects of various structural, chemical, and mechanical features of the guard cells on the stomatal opening characteristics; these studies all support the well-known qualitative observation that the mechanical anisotropy of the guard cells plays a critical role in stomatal opening. Here, we propose a computationally based analytical model that quantitatively establishes the relations between the degree of anisotropy of the guard cell, the bio-composite constituents of the cell wall, and the aperture and area of stomatal opening. The model introduces two non-dimensional key parameters that dominate the guard cell deformations—the inflation driving force and the anisotropy ratio—and it serves as a generic framework that is not limited to specific plant species. The modeling predictions are in line with a wide range of previous experimental studies, and its analytical formulation sheds new light on the relations between the structure, mechanics, and function of stomata. Moreover, the model provides an analytical tool to back-calculate the elastic characteristics of the matrix that composes the guard cell walls, which, to the best of our knowledge, cannot be probed by direct nano-mechanical experiments; indeed, the estimations of our model are in good agreement with recently published results of independent numerical optimization schemes. The emerging insights from the stomatal structure-mechanics “design guidelines” may promote the development of miniature, yet complex, multiscale composite actuation mechanisms for future engineering platforms. PMID:29312365

Modeling quasi-static poroelastic propagation using an asymptotic approach

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vasco, D.W.

2007-11-01

Since the formulation of poroelasticity (Biot(1941)) and its reformulation (Rice & Cleary(1976)), there have been many efforts to solve the coupled system of equations. Perhaps because of the complexity of the governing equations, most of the work has been directed towards finding numerical solutions. For example, Lewis and co-workers published early papers (Lewis & Schrefler(1978); Lewis et al.(1991)Lewis, Schrefler, & Simoni) concerned with finite-element methods for computing consolidation, subsidence, and examining the importance of coupling. Other early work dealt with flow in a deformable fractured medium (Narasimhan & Witherspoon 1976); Noorishad et al.(1984)Noorishad, Tsang, & Witherspoon. This effort eventually evolvedmore » into a general numerical approach for modeling fluid flow and deformation (Rutqvist et al.(2002)Rutqvist, Wu, Tsang, & Bodvarsson). As a result of this and other work, numerous coupled, computer-based algorithms have emerged, typically falling into one of three categories: one-way coupling, loose coupling, and full coupling (Minkoff et al.(2003)Minkoff, Stone, Bryant, Peszynska, & Wheeler). In one-way coupling the fluid flow is modeled using a conventional numerical simulator and the resulting change in fluid pressures simply drives the deformation. In loosely coupled modeling distinct geomechanical and fluid flow simulators are run for a sequence of time steps and at the conclusion of each step information is passed between the simulators. In full coupling, the fluid flow and geomechanics equations are solved simultaneously at each time step (Lewis & Sukirman(1993); Lewis & Ghafouri(1997); Gutierrez & Lewis(2002)). One disadvantage of a purely numerical approach to solving the governing equations of poroelasticity is that it is not clear how the various parameters interact and influence the solution. Analytic solutions have an advantage in that respect; the relationship between the medium and fluid properties is clear from the form of the solution. Unfortunately, analytic solutions are only available for highly idealized conditions, such as a uniform (Rudnicki(1986)) or one-dimensional (Simon et al.(1984)Simon, Zienkiewicz, & Paul; Gajo & Mongiovi(1995); Wang & Kumpel(2003)) medium. In this paper I derive an asymptotic, semi-analytic solution for coupled deformation and flow. The approach is similar to trajectory- or ray-based methods used to model elastic and electromagnetic wave propagation (Aki & Richards(1980); Kline & Kay(1979); Kravtsov & Orlov(1990); Keller & Lewis(1995)) and, more recently, diffusive propagation (Virieux et al.(1994)Virieux, Flores-Luna, & Gibert; Vasco et al.(2000)Vasco, Karasaki, & Keers; Shapiro et al.(2002)Shapiro, Rothert, Rath, & Rindschwentner; Vasco(2007)). The asymptotic solution is valid in the presence of smoothly-varying, heterogeneous flow properties. The situation I am modeling is that of a formation with heterogeneous flow properties and uniform mechanical properties. The boundaries of the layer may vary arbitrary and can define discontinuities in both flow and mechanical properties. Thus, using the techniques presented here, it is possible to model a stack of irregular layers with differing mechanical properties. Within each layer the hydraulic conductivity and porosity can vary smoothly but with an arbitrarily large magnitude. The advantages of this approach are that it produces explicit, semi-analytic expressions for the arrival time and amplitude of the Biot slow and fast waves, expressions which are valid in a medium with heterogeneous properties. As shown here, the semi-analytic expressions provide insight into the nature of pressure and deformation signals recorded at an observation point. Finally, the technique requires considerably fewer computer resources than does a fully numerical treatment.« less

Summary of Research Report

NASA Technical Reports Server (NTRS)

Elishakoff, Isaac

1998-01-01

Ten papers, published in various publications, on buckling, and the effects of imperfections on various structures are presented. These papers are: (1) Buckling mode localization in elastic plates due to misplacement in the stiffner location; (2) On vibrational imperfection sensitivity on Augusti's model structure in the vicinity of a non-linear static state; (3) Imperfection sensitivity due to elastic moduli in the Roorda Koiter frame; (4) Buckling mode localization in a multi-span periodic structure with a disorder in a single span; (5) Prediction of natural frequency and buckling load variability due to uncertainty in material properties by convex modeling; (6) Derivation of multi-dimensional ellipsoidal convex model for experimental data; (7) Passive control of buckling deformation via Anderson localization phenomenon; (8)Effect of the thickness and initial im perfection on buckling on composite cylindrical shells: asymptotic analysis and numerical results by BOSOR4 and PANDA2; (9) Worst case estimation of homology design by convex analysis; (10) Buckling of structures with uncertain imperfections - Personal perspective.

Simulation of 100-300 GHz solid-state harmonic sources

NASA Technical Reports Server (NTRS)

Zybura, Michael F.; Jones, J. Robert; Jones, Stephen H.; Tait, Gregory B.

1995-01-01

Accurate and efficient simulations of the large-signal time-dependent characteristics of second-harmonic Transferred Electron Oscillators (TEO's) and Heterostructure Barrier Varactor (HBV) frequency triplers have been obtained. This is accomplished by using a novel and efficient harmonic-balance circuit analysis technique which facilitates the integration of physics-based hydrodynamic device simulators. The integrated hydrodynamic device/harmonic-balance circuit simulators allow TEO and HBV circuits to be co-designed from both a device and a circuit point of view. Comparisons have been made with published experimental data for both TEO's and HBV's. For TEO's, excellent correlation has been obtained at 140 GHz and 188 GHz in second-harmonic operation. Excellent correlation has also been obtained for HBV frequency triplers operating near 200 GHz. For HBV's, both a lumped quasi-static equivalent circuit model and the hydrodynamic device simulator have been linked to the harmonic-balance circuit simulator. This comparison illustrates the importance of representing active devices with physics-based numerical device models rather than analytical device models.

Formation of banded vegetation patterns resulted from interactions between sediment deposition and vegetation growth.

PubMed

Huang, Tousheng; Zhang, Huayong; Dai, Liming; Cong, Xuebing; Ma, Shengnan

2018-03-01

This research investigates the formation of banded vegetation patterns on hillslopes affected by interactions between sediment deposition and vegetation growth. The following two perspectives in the formation of these patterns are taken into consideration: (a) increased sediment deposition from plant interception, and (b) reduced plant biomass caused by sediment accumulation. A spatial model is proposed to describe how the interactions between sediment deposition and vegetation growth promote self-organization of banded vegetation patterns. Based on theoretical and numerical analyses of the proposed spatial model, vegetation bands can result from a Turing instability mechanism. The banded vegetation patterns obtained in this research resemble patterns reported in the literature. Moreover, measured by sediment dynamics, the variation of hillslope landform can be described. The model predicts how treads on hillslopes evolve with the banded patterns. Thus, we provide a quantitative interpretation for coevolution of vegetation patterns and landforms under effects of sediment redistribution. Copyright © 2018. Published by Elsevier Masson SAS.

K-ras Mutations as the Earliest Driving Force in a Subset of Colorectal Carcinomas

PubMed Central

MARGETIS, NIKOLAOS; KOULOUKOUSSA, MYRSINI; PAVLOU, KYRIAKI; VRAKAS, SPYRIDON; MARIOLIS-SAPSAKOS, THEODOROS

2017-01-01

K-ras oncogene is a key factor in colorectal cancer. Based on published and our data we propose that K-ras could be the oncogene responsible for the inactivation of the tumor-suppressor gene APC, currently considered as the initial step in colorectal tumorigenesis. K-ras fulfills the criteria of the oncogene-induced DNA damage model, as it can provoke well- established causes for inactivating tumor-suppressors, i.e. DNA double-strand breaks (causing allele deletion) and ROS production (responsible for point mutation). The model we propose is a variation of the currently existing model and hypothesizes that, in a subgroup of colorectal carcinomas, K-ras mutation may precede APC inactivation, representing the earliest driving force and, probably, an early biomarker of colorectal carcinogenesis. This observation is clinically useful, since it may modify the preventive colorectal cancer strategy, restricting numerically patients undergoing colonoscopies to those bearing K-ras mutation in their colorectum, either in benign polyps or the normal accompanying mucosa. PMID:28652417

Stability of equidimensional pseudo-single-domain magnetite over billion-year timescales.

PubMed

Nagy, Lesleis; Williams, Wyn; Muxworthy, Adrian R; Fabian, Karl; Almeida, Trevor P; Conbhuí, Pádraig Ó; Shcherbakov, Valera P

2017-09-26

Interpretations of paleomagnetic observations assume that naturally occurring magnetic particles can retain their primary magnetic recording over billions of years. The ability to retain a magnetic recording is inferred from laboratory measurements, where heating causes demagnetization on the order of seconds. The theoretical basis for this inference comes from previous models that assume only the existence of small, uniformly magnetized particles, whereas the carriers of paleomagnetic signals in rocks are usually larger, nonuniformly magnetized particles, for which there is no empirically complete, thermally activated model. This study has developed a thermally activated numerical micromagnetic model that can quantitatively determine the energy barriers between stable states in nonuniform magnetic particles on geological timescales. We examine in detail the thermal stability characteristics of equidimensional cuboctahedral magnetite and find that, contrary to previously published theories, such nonuniformly magnetized particles provide greater magnetic stability than their uniformly magnetized counterparts. Hence, nonuniformly magnetized grains, which are commonly the main remanence carrier in meteorites and rocks, can record and retain high-fidelity magnetic recordings over billions of years.

Evaluation of a combination of continuum and truss finite elements in a model of passive and active muscle tissue.

PubMed

Hedenstierna, S; Halldin, P; Brolin, K

2008-12-01

The numerical method of finite elements (FE) is a powerful tool for analysing stresses and strains in the human body. One area of increasing interest is the skeletal musculature. This study evaluated modelling of skeletal muscle tissue using a combination of passive non-linear, viscoelastic solid elements and active Hill-type truss elements, the super-positioned muscle finite element (SMFE). The performance of the combined materials and elements was evaluated for eccentric motions by simulating a tensile experiment from a published study on a stimulated rabbit muscle including three different strain rates. It was also evaluated for isometric and concentric contractions. The resulting stress-strain curves had the same overall pattern as the experiments, with the main limitation being sensitivity to the active force-length relation. It was concluded that the SMFE could model active and passive muscle tissue at constant rate elongations for strains below failure, as well as isometric and concentric contractions.

Permeability study of cancellous bone and its idealised structures.

PubMed

Syahrom, Ardiyansyah; Abdul Kadir, Mohammed Rafiq; Harun, Muhamad Nor; Öchsner, Andreas

2015-01-01

Artificial bone is a suitable alternative to autografts and allografts, however their use is still limited. Though there were numerous reports on their structural properties, permeability studies of artificial bones were comparably scarce. This study focused on the development of idealised, structured models of artificial cancellous bone and compared their permeability values with bone surface area and porosity. Cancellous bones from fresh bovine femur were extracted and cleaned following an established protocol. The samples were scanned using micro-computed tomography (μCT) and three-dimensional models of the cancellous bones were reconstructed for morphology study. Seven idealised and structured cancellous bone models were then developed and fabricated via rapid prototyping technique. A test-rig was developed and permeability tests were performed on the artificial and real cancellous bones. The results showed a linear correlation between the permeability and the porosity as well as the bone surface area. The plate-like idealised structure showed a similar value of permeability to the real cancellous bones. Copyright © 2014 IPEM. Published by Elsevier Ltd. All rights reserved.

Dynamics of a plant-herbivore-predator system with plant-toxicity.

PubMed

Feng, Zhilan; Qiu, Zhipeng; Liu, Rongsong; DeAngelis, Donald L

2011-02-01

A system of ordinary differential equations is considered that models the interactions of two plant species populations, an herbivore population, and a predator population. We use a toxin-determined functional response to describe the interactions between plant species and herbivores and use a Holling Type II functional response to model the interactions between herbivores and predators. In order to study how the predators impact the succession of vegetation, we derive invasion conditions under which a plant species can invade into an environment in which another plant species is co-existing with a herbivore population with or without a predator population. These conditions provide threshold quantities for several parameters that may play a key role in the dynamics of the system. Numerical simulations are conducted to reinforce the analytical results. This model can be applied to a boreal ecosystem trophic chain to examine the possible cascading effects of predator-control actions when plant species differ in their levels of toxic defense. Published by Elsevier Inc.

A note on stress-driven anisotropic diffusion and its role in active deformable media.

PubMed

Cherubini, Christian; Filippi, Simonetta; Gizzi, Alessio; Ruiz-Baier, Ricardo

2017-10-07

We introduce a new model to describe diffusion processes within active deformable media. Our general theoretical framework is based on physical and mathematical considerations, and it suggests to employ diffusion tensors directly influenced by the coupling with mechanical stress. The proposed generalised reaction-diffusion-mechanics model reveals that initially isotropic and homogeneous diffusion tensors turn into inhomogeneous and anisotropic quantities due to the intrinsic structure of the nonlinear coupling. We study the physical properties leading to these effects, and investigate mathematical conditions for its occurrence. Together, the mathematical model and the numerical results obtained using a mixed-primal finite element method, clearly support relevant consequences of stress-driven diffusion into anisotropy patterns, drifting, and conduction velocity of the resulting excitation waves. Our findings also indicate the applicability of this novel approach in the description of mechano-electric feedback in actively deforming bio-materials such as the cardiac tissue. Copyright © 2017. Published by Elsevier Ltd.

Development of a statistical oil spill model for risk assessment.

PubMed

Guo, Weijun

2017-11-01

To gain a better understanding of the impacts from potential risk sources, we developed an oil spill model using probabilistic method, which simulates numerous oil spill trajectories under varying environmental conditions. The statistical results were quantified from hypothetical oil spills under multiple scenarios, including area affected probability, mean oil slick thickness, and duration of water surface exposed to floating oil. The three sub-indices together with marine area vulnerability are merged to compute the composite index, characterizing the spatial distribution of risk degree. Integral of the index can be used to identify the overall risk from an emission source. The developed model has been successfully applied in comparison to and selection of an appropriate oil port construction location adjacent to a marine protected area for Phoca largha in China. The results highlight the importance of selection of candidates before project construction, since that risk estimation from two adjacent potential sources may turn out to be significantly different regarding hydrodynamic conditions and eco-environmental sensitivity. Copyright © 2017. Published by Elsevier Ltd.

Advantages and pitfalls in the application of mixed-model association methods.

PubMed

Yang, Jian; Zaitlen, Noah A; Goddard, Michael E; Visscher, Peter M; Price, Alkes L

2014-02-01

Mixed linear models are emerging as a method of choice for conducting genetic association studies in humans and other organisms. The advantages of the mixed-linear-model association (MLMA) method include the prevention of false positive associations due to population or relatedness structure and an increase in power obtained through the application of a correction that is specific to this structure. An underappreciated point is that MLMA can also increase power in studies without sample structure by implicitly conditioning on associated loci other than the candidate locus. Numerous variations on the standard MLMA approach have recently been published, with a focus on reducing computational cost. These advances provide researchers applying MLMA methods with many options to choose from, but we caution that MLMA methods are still subject to potential pitfalls. Here we describe and quantify the advantages and pitfalls of MLMA methods as a function of study design and provide recommendations for the application of these methods in practical settings.

Wave of chaos in a spatial eco-epidemiological system: Generating realistic patterns of patchiness in rabbit-lynx dynamics.

PubMed

Upadhyay, Ranjit Kumar; Roy, Parimita; Venkataraman, C; Madzvamuse, A

2016-11-01

In the present paper, we propose and analyze an eco-epidemiological model with diffusion to study the dynamics of rabbit populations which are consumed by lynx populations. Existence, boundedness, stability and bifurcation analyses of solutions for the proposed rabbit-lynx model are performed. Results show that in the presence of diffusion the model has the potential of exhibiting Turing instability. Numerical results (finite difference and finite element methods) reveal the existence of the wave of chaos and this appears to be a dominant mode of disease dispersal. We also show the mechanism of spatiotemporal pattern formation resulting from the Hopf bifurcation analysis, which can be a potential candidate for understanding the complex spatiotemporal dynamics of eco-epidemiological systems. Implications of the asymptotic transmission rate on disease eradication among rabbit population which in turn enhances the survival of Iberian lynx are discussed. Crown Copyright © 2016. Published by Elsevier Inc. All rights reserved.

Magnetohydrodynamics Nanofluid Flow Containing Gyrotactic Microorganisms Propagating Over a Stretching Surface by Successive Taylor Series Linearization Method

NASA Astrophysics Data System (ADS)

Shahid, A.; Zhou, Z.; Bhatti, M. M.; Tripathi, D.

2018-03-01

Nanofluid dynamics with magnetohydrodynamics has tremendously contributed in industrial applications recently since presence of nanoparticle in base fluids enhances the specific chemical and physical properties. Owing to the relevance of nanofluid dynamics, we analyze the nanofluid flow in the presence of gyrotactic microorganism and magnetohydrodynamics through a stretching/shrinking plate. The impacts of chemical reaction and thermal radiation on flow characteristics are also studied. To simplify the governing equations of microorganisms, velocity, concentration and temperature, the similarity transformations are employed. The couple governing equations are numerically solved using Successive Taylor Series Linearization Method (STSLM). The velocity profile, motile microorganism density profile, concentration profile, temperature profile as well as Nusselt number, skin friction coefficient, Sherwood number and density number of motile microorganisms are discussed using tables and graphs against all the sundry parameters. A numerical comparison is also given for Nusselt number, Sherwood number, skin friction, and density number of motile microorganisms with previously published results to validate the present model. The results show that Nusselt number, Sherwood number and density number diminish with increasing the magnetic field effects.

Stability of nonuniform rotor blades in hover using a mixed formulation

NASA Technical Reports Server (NTRS)

Stephens, W. B.; Hodges, D. H.; Avila, J. H.; Kung, R. M.

1980-01-01

A mixed formulation for calculating static equilibrium and stability eigenvalues of nonuniform rotor blades in hover is presented. The static equilibrium equations are nonlinear and are solved by an accurate and efficient collocation method. The linearized perturbation equations are solved by a one step, second order integration scheme. The numerical results correlate very well with published results from a nearly identical stability analysis based on a displacement formulation. Slight differences in the results are traced to terms in the equations that relate moments to derivatives of rotations. With the present ordering scheme, in which terms of the order of squares of rotations are neglected with respect to unity, it is not possible to achieve completely equivalent models based on mixed and displacement formulations. The one step methods reveal that a second order Taylor expansion is necessary to achieve good convergence for nonuniform rotating blades. Numerical results for a hypothetical nonuniform blade, including the nonlinear static equilibrium solution, were obtained with no more effort or computer time than that required for a uniform blade.

On stagnation point flow of a micro polar nanofluid past a circular cylinder with velocity and thermal slip

NASA Astrophysics Data System (ADS)

Abbas, Nadeem; Saleem, S.; Nadeem, S.; Alderremy, A. A.; Khan, A. U.

2018-06-01

The concerned problem is dedicated to study stagnation point flow of MHD micropolar nanomaterial fluid over a circular cylinder having sinusoidal radius variation. Velocity jump slip phenomenon with porous medium is also taken into account. To be more specific, the physical situation of micropolar fluid in the presence of both weak and strong concentration is mathematically modeled in terms of differential equations. Here, three nanoparticles namely Titania (TiO2) , Copper (Cu) and Alumina (Al2O3) compared with water as base fluids are incorporated for analysis. The resulting non-linear system has been solved by Runge-Kutta-Fehlberg scheme. Numerical solutions for velocities and temperature profiles are settled for alumina-water nanofluid and deliberated through graphs and numerical tables. It is seen that the skin friction coefficients and the rate of heat transfer are maximum for copper-water nanofluid related to the alumina-water and titania-water nanofluids. Also, the precision of the present findings is certified by equating them with the previously published work.

Oscar Buneman, a personal remembrance

NASA Astrophysics Data System (ADS)

Nishikawa, Ken-Ichi

Oscar Buneman, professor emeritus of electrical engineering at Stanford University and significant contributor to the fields of numerical analysis, plasma electrodynamics, and fundamental electromagnetic theory, died in his sleep on January 24, 1993. Numerous tributes to his memory have been published; however, I would like to concentrate on my own marvelous experiences with him. I knew Oscar Buneman through his interesting lectures at the International School for Space Simulation (ISSS) II, held in Kauai, Hawaii, in 1985. Later during ISSS III, held in France in 1987, Oscar was my instructor for the practical courses. I enjoyed his experienced guidance on the 1-D electrostatic code and developed a close relationship with him. After this course, I presented a poster on a 3-D magnetostatic simulation of whistler waves driven by an electron beam a a symposium in Beaulieu-sur-Mer, France. A friend told me that Oscar Buneman had attended my poster session and had said that he had also done a similar model. After the 1987 Fall AGU Meeting in San Francisco, I met Oscar Buneman at Stanford University. He was interested in my 3-D magnetostatic simulation of Whistler waves.

MoMaS reactive transport benchmark using PFLOTRAN

NASA Astrophysics Data System (ADS)

Park, H.

2017-12-01

MoMaS benchmark was developed to enhance numerical simulation capability for reactive transport modeling in porous media. The benchmark was published in late September of 2009; it is not taken from a real chemical system, but realistic and numerically challenging tests. PFLOTRAN is a state-of-art massively parallel subsurface flow and reactive transport code that is being used in multiple nuclear waste repository projects at Sandia National Laboratories including Waste Isolation Pilot Plant and Used Fuel Disposition. MoMaS benchmark has three independent tests with easy, medium, and hard chemical complexity. This paper demonstrates how PFLOTRAN is applied to this benchmark exercise and shows results of the easy benchmark test case which includes mixing of aqueous components and surface complexation. Surface complexations consist of monodentate and bidentate reactions which introduces difficulty in defining selectivity coefficient if the reaction applies to a bulk reference volume. The selectivity coefficient becomes porosity dependent for bidentate reaction in heterogeneous porous media. The benchmark is solved by PFLOTRAN with minimal modification to address the issue and unit conversions were made properly to suit PFLOTRAN.

Numerical study of nonlinear full wave acoustic propagation

NASA Astrophysics Data System (ADS)

Velasco-Segura, Roberto; Rendon, Pablo L.

2013-11-01

With the aim of describing nonlinear acoustic phenomena, a form of the conservation equations for fluid dynamics is presented, deduced using slightly less restrictive hypothesis than those necessary to obtain the well known Westervelt equation. This formulation accounts for full wave diffraction, nonlinearity, and thermoviscous dissipative effects. A CLAWPACK based, 2D finite-volume method using Roe's linearization has been implemented to obtain numerically the solution of the proposed equations. In order to validate the code, two different tests have been performed: one against a special Taylor shock-like analytic solution, the other against published results on a HIFU system, both with satisfactory results. The code is written for parallel execution on a GPU and improves performance by a factor of over 50 when compared to the standard CLAWPACK Fortran code. This code can be used to describe moderate nonlinear phenomena, at low Mach numbers, in domains as large as 100 wave lengths. Applications range from modest models of diagnostic and therapeutic HIFU, parametric acoustic arrays, to acoustic wave guides. A couple of examples will be presented showing shock formation and oblique interaction. DGAPA PAPIIT IN110411, PAEP UNAM 2013.

THE EMERGENCE OF NUMERICAL AIR QUALITY FORECASTING MODELS AND THEIR APPLICATION

EPA Science Inventory

In recent years the U.S. and other nations have begun programs for short-term local through regional air quality forecasting based upon numerical three-dimensional air quality grid models. These numerical air quality forecast (NAQF) models and systems have been developed and test...

THE EMERGENCE OF NUMERICAL AIR QUALITY FORCASTING MODELS AND THEIR APPLICATIONS

EPA Science Inventory

In recent years the U.S. and other nations have begun programs for short-term local through regional air quality forecasting based upon numerical three-dimensional air quality grid models. These numerical air quality forecast (NAQF) models and systems have been developed and test...

Numerical considerations for Lagrangian stochastic dispersion models: Eliminating rogue trajectories, and the importance of numerical accuracy

USDA-ARS?s Scientific Manuscript database

When Lagrangian stochastic models for turbulent dispersion are applied to complex flows, some type of ad hoc intervention is almost always necessary to eliminate unphysical behavior in the numerical solution. This paper discusses numerical considerations when solving the Langevin-based particle velo...

Heat transfer models for predicting Salmonella enteritidis in shell eggs through supply chain distribution.

PubMed

Almonacid, S; Simpson, R; Teixeira, A

2007-11-01

Egg and egg preparations are important vehicles for Salmonella enteritidis infections. The influence of time-temperature becomes important when the presence of this organism is found in commercial shell eggs. A computer-aided mathematical model was validated to estimate surface and interior temperature of shell eggs under variable ambient and refrigerated storage temperature. A risk assessment of S. enteritidis based on the use of this model, coupled with S. enteritidis kinetics, has already been reported in a companion paper published earlier in JFS. The model considered the actual geometry and composition of shell eggs and was solved by numerical techniques (finite differences and finite elements). Parameters of interest such as local (h) and global (U) heat transfer coefficient, thermal conductivity, and apparent volumetric specific heat were estimated by an inverse procedure from experimental temperature measurement. In order to assess the error in predicting microbial population growth, theoretical and experimental temperatures were applied to a S. enteritidis growth model taken from the literature. Errors between values of microbial population growth calculated from model predicted compared with experimentally measured temperatures were satisfactorily low: 1.1% and 0.8% for the finite difference and finite element model, respectively.

A reduced-order, single-bubble cavitation model with applications to therapeutic ultrasound

PubMed Central

Kreider, Wayne; Crum, Lawrence A.; Bailey, Michael R.; Sapozhnikov, Oleg A.

2011-01-01

Cavitation often occurs in therapeutic applications of medical ultrasound such as shock-wave lithotripsy (SWL) and high-intensity focused ultrasound (HIFU). Because cavitation bubbles can affect an intended treatment, it is important to understand the dynamics of bubbles in this context. The relevant context includes very high acoustic pressures and frequencies as well as elevated temperatures. Relative to much of the prior research on cavitation and bubble dynamics, such conditions are unique. To address the relevant physics, a reduced-order model of a single, spherical bubble is proposed that incorporates phase change at the liquid-gas interface as well as heat and mass transport in both phases. Based on the energy lost during the inertial collapse and rebound of a millimeter-sized bubble, experimental observations were used to tune and test model predictions. In addition, benchmarks from the published literature were used to assess various aspects of model performance. Benchmark comparisons demonstrate that the model captures the basic physics of phase change and diffusive transport, while it is quantitatively sensitive to specific model assumptions and implementation details. Given its performance and numerical stability, the model can be used to explore bubble behaviors across a broad parameter space relevant to therapeutic ultrasound. PMID:22088026

Age- and bite-structured models for vector-borne diseases.

PubMed

Rock, K S; Wood, D A; Keeling, M J

2015-09-01

The biology and behaviour of biting insects is a vitally important aspect in the spread of vector-borne diseases. This paper aims to determine, through the use of mathematical models, what effect incorporating vector senescence and realistic feeding patterns has on disease. A novel model is developed to enable the effects of age- and bite-structure to be examined in detail. This original PDE framework extends previous age-structured models into a further dimension to give a new insight into the role of vector biting and its interaction with vector mortality and spread of disease. Through the PDE model, the roles of the vector death and bite rates are examined in a way which is impossible under the traditional ODE formulation. It is demonstrated that incorporating more realistic functions for vector biting and mortality in a model may give rise to different dynamics than those seen under a more simple ODE formulation. The numerical results indicate that the efficacy of control methods that increase vector mortality may not be as great as predicted under a standard host-vector model, whereas other controls including treatment of humans may be more effective than previously thought. Copyright © 2015 The Authors. Published by Elsevier B.V. All rights reserved.

Carbon accounting and economic model uncertainty of emissions from biofuels-induced land use change.

PubMed

Plevin, Richard J; Beckman, Jayson; Golub, Alla A; Witcover, Julie; O'Hare, Michael

2015-03-03

Few of the numerous published studies of the emissions from biofuels-induced "indirect" land use change (ILUC) attempt to propagate and quantify uncertainty, and those that have done so have restricted their analysis to a portion of the modeling systems used. In this study, we pair a global, computable general equilibrium model with a model of greenhouse gas emissions from land-use change to quantify the parametric uncertainty in the paired modeling system's estimates of greenhouse gas emissions from ILUC induced by expanded production of three biofuels. We find that for the three fuel systems examined--US corn ethanol, Brazilian sugar cane ethanol, and US soybean biodiesel--95% of the results occurred within ±20 g CO2e MJ(-1) of the mean (coefficient of variation of 20-45%), with economic model parameters related to crop yield and the productivity of newly converted cropland (from forestry and pasture) contributing most of the variance in estimated ILUC emissions intensity. Although the experiments performed here allow us to characterize parametric uncertainty, changes to the model structure have the potential to shift the mean by tens of grams of CO2e per megajoule and further broaden distributions for ILUC emission intensities.

A reduced-order, single-bubble cavitation model with applications to therapeutic ultrasound.

PubMed

Kreider, Wayne; Crum, Lawrence A; Bailey, Michael R; Sapozhnikov, Oleg A

2011-11-01

Cavitation often occurs in therapeutic applications of medical ultrasound such as shock-wave lithotripsy (SWL) and high-intensity focused ultrasound (HIFU). Because cavitation bubbles can affect an intended treatment, it is important to understand the dynamics of bubbles in this context. The relevant context includes very high acoustic pressures and frequencies as well as elevated temperatures. Relative to much of the prior research on cavitation and bubble dynamics, such conditions are unique. To address the relevant physics, a reduced-order model of a single, spherical bubble is proposed that incorporates phase change at the liquid-gas interface as well as heat and mass transport in both phases. Based on the energy lost during the inertial collapse and rebound of a millimeter-sized bubble, experimental observations were used to tune and test model predictions. In addition, benchmarks from the published literature were used to assess various aspects of model performance. Benchmark comparisons demonstrate that the model captures the basic physics of phase change and diffusive transport, while it is quantitatively sensitive to specific model assumptions and implementation details. Given its performance and numerical stability, the model can be used to explore bubble behaviors across a broad parameter space relevant to therapeutic ultrasound.

Re-evaluation of model-based light-scattering spectroscopy for tissue spectroscopy

PubMed Central

Lau, Condon; Šćepanović, Obrad; Mirkovic, Jelena; McGee, Sasha; Yu, Chung-Chieh; Fulghum, Stephen; Wallace, Michael; Tunnell, James; Bechtel, Kate; Feld, Michael

2009-01-01

Model-based light scattering spectroscopy (LSS) seemed a promising technique for in-vivo diagnosis of dysplasia in multiple organs. In the studies, the residual spectrum, the difference between the observed and modeled diffuse reflectance spectra, was attributed to single elastic light scattering from epithelial nuclei, and diagnostic information due to nuclear changes was extracted from it. We show that this picture is incorrect. The actual single scattering signal arising from epithelial nuclei is much smaller than the previously computed residual spectrum, and does not have the wavelength dependence characteristic of Mie scattering. Rather, the residual spectrum largely arises from assuming a uniform hemoglobin distribution. In fact, hemoglobin is packaged in blood vessels, which alters the reflectance. When we include vessel packaging, which accounts for an inhomogeneous hemoglobin distribution, in the diffuse reflectance model, the reflectance is modeled more accurately, greatly reducing the amplitude of the residual spectrum. These findings are verified via numerical estimates based on light propagation and Mie theory, tissue phantom experiments, and analysis of published data measured from Barrett’s esophagus. In future studies, vessel packaging should be included in the model of diffuse reflectance and use of model-based LSS should be discontinued. PMID:19405760

A mega Ultra Low Velocity Zone at the Base of the Iceland Plume: a Target for Tomographic Telescope Implementation

NASA Astrophysics Data System (ADS)

Romanowicz, Barbara; Yuan, Kaiqing; Masson, Yder; Adourian, Sevan

2017-04-01

We have recently constructed the first global whole mantle radially anisotropic shear wave velocity model based on time domain full waveform inversion and numerical wavefield computations using the Spectral Element Method (French et al., 2013; French and Romanowicz, 2014). This model's most salient features are broad chimney-like low velocity conduits, rooted within the large-low-shear-velocity provinces (LLSVPs) at the base of the mantle, and extending from the core-mantle boundary up through most of the lower mantle, projecting to the earth's surface in the vicinity of major hotspots. The robustness of these features is confirmed through several non-linear synthetic tests, which we present here, including several iterations of inversion using a different starting model than that which served for the published model. The roots of these not-so-classical "plumes" are regions of more pronounced low shear velocity. While the detailed structure is not yet resolvable tomographically, at least two of them contain large (>800 km diameter) ultra-low-velocity zones (ULVZs), one under Hawaii (Cottaar and Romanowicz, 2012) and the other one under Samoa (Thorne et al., 2013). Through 3D numerical forward modelling of Sdiff phases down to 10s period, using data from broadband arrays illuminating the base of the Iceland plume from different directions, we show that such a large ULVZ also exists at the root of this plume, embedded within a taller region of moderately reduced low shear velocity, such as proposed by He et al. (2015). We also show that such a wide, but localized ULVZ is unique in a broad region around the base of the Iceland Plume. Because of the intense computational effort required for forward modelling of trial structures, to first order this ULVZ is represented by a cylindrical structure of diameter 900 km, height 20 km and velocity reduction 20%. To further refine the model, we have developed a technique which we call "tomographic telescope", in which we are able to compute the teleseismic wavefield down to periods of 10s only once, while subsequent iterations require numerical wavefield computations only within the target region, in this case, around the base of the Iceland plume. We describe the method and preliminary results of its implementation.

Understanding Cultivar-Specificity and Soil Determinants of the Cannabis Microbiome

DOE PAGES

Winston, Max E.; Hampton-Marcell, Jarrad; Zarraonaindia, Iratxe; ...

2014-06-16

Understanding microbial partnerships with the medicinally and economically important crop Cannabis has the potential to affect agricultural practice by improving plant fitness and production yield. Furthermore, Cannabis presents an interesting model to explore plant-microbiome interactions as it produces numerous secondary metabolic compounds. Here we present the first description of the endorhiza-, rhizosphere-, and bulk soil-associated microbiome of five distinct Cannabis cultivars. Bacterial communities of the endorhiza showed significant cultivar-specificity. When controlling cultivar and soil type the microbial community structure was significantly different between plant cultivars, soil types, and between the endorhiza, rhizosphere and soil. In conclusion, the influence of soilmore » type, plant cultivar and sample type differentiation on the microbial community structure provides support for a previously published two-tier selection model, whereby community composition across sample types is determined mainly by soil type, while community structure within endorhiza samples is determined mainly by host cultivar.« less

Understanding Cultivar-Specificity and Soil Determinants of the Cannabis Microbiome

DOE Office of Scientific and Technical Information (OSTI.GOV)

Winston, Max E.; Hampton-Marcell, Jarrad; Zarraonaindia, Iratxe

Understanding microbial partnerships with the medicinally and economically important crop Cannabis has the potential to affect agricultural practice by improving plant fitness and production yield. Furthermore, Cannabis presents an interesting model to explore plant-microbiome interactions as it produces numerous secondary metabolic compounds. Here we present the first description of the endorhiza-, rhizosphere-, and bulk soil-associated microbiome of five distinct Cannabis cultivars. Bacterial communities of the endorhiza showed significant cultivar-specificity. When controlling cultivar and soil type the microbial community structure was significantly different between plant cultivars, soil types, and between the endorhiza, rhizosphere and soil. In conclusion, the influence of soilmore » type, plant cultivar and sample type differentiation on the microbial community structure provides support for a previously published two-tier selection model, whereby community composition across sample types is determined mainly by soil type, while community structure within endorhiza samples is determined mainly by host cultivar.« less

Finite-volume method with lattice Boltzmann flux scheme for incompressible porous media flow at the representative-elementary-volume scale.

PubMed

Hu, Yang; Li, Decai; Shu, Shi; Niu, Xiaodong

2016-02-01

Based on the Darcy-Brinkman-Forchheimer equation, a finite-volume computational model with lattice Boltzmann flux scheme is proposed for incompressible porous media flow in this paper. The fluxes across the cell interface are calculated by reconstructing the local solution of the generalized lattice Boltzmann equation for porous media flow. The time-scaled midpoint integration rule is adopted to discretize the governing equation, which makes the time step become limited by the Courant-Friedricks-Lewy condition. The force term which evaluates the effect of the porous medium is added to the discretized governing equation directly. The numerical simulations of the steady Poiseuille flow, the unsteady Womersley flow, the circular Couette flow, and the lid-driven flow are carried out to verify the present computational model. The obtained results show good agreement with the analytical, finite-difference, and/or previously published solutions.

Novel prescribed performance neural control of a flexible air-breathing hypersonic vehicle with unknown initial errors.

PubMed

Bu, Xiangwei; Wu, Xiaoyan; Zhu, Fujing; Huang, Jiaqi; Ma, Zhen; Zhang, Rui

2015-11-01

A novel prescribed performance neural controller with unknown initial errors is addressed for the longitudinal dynamic model of a flexible air-breathing hypersonic vehicle (FAHV) subject to parametric uncertainties. Different from traditional prescribed performance control (PPC) requiring that the initial errors have to be known accurately, this paper investigates the tracking control without accurate initial errors via exploiting a new performance function. A combined neural back-stepping and minimal learning parameter (MLP) technology is employed for exploring a prescribed performance controller that provides robust tracking of velocity and altitude reference trajectories. The highlight is that the transient performance of velocity and altitude tracking errors is satisfactory and the computational load of neural approximation is low. Finally, numerical simulation results from a nonlinear FAHV model demonstrate the efficacy of the proposed strategy. Copyright © 2015 ISA. Published by Elsevier Ltd. All rights reserved.

Global epidemic invasion thresholds in directed cattle subpopulation networks having source, sink, and transit nodes.

PubMed

Schumm, Phillip; Scoglio, Caterina; Zhang, Qian; Balcan, Duygu

2015-02-21

Through the characterization of a metapopulation cattle disease model on a directed network having source, transit, and sink nodes, we derive two global epidemic invasion thresholds. The first threshold defines the conditions necessary for an epidemic to successfully spread at the global scale. The second threshold defines the criteria that permit an epidemic to move out of the giant strongly connected component and to invade the populations of the sink nodes. As each sink node represents a final waypoint for cattle before slaughter, the existence of an epidemic among the sink nodes is a serious threat to food security. We find that the relationship between these two thresholds depends on the relative proportions of transit and sink nodes in the system and the distributions of the in-degrees of both node types. These analytic results are verified through numerical realizations of the metapopulation cattle model. Published by Elsevier Ltd.

Perturbed cooperative-state feedback strategy for model predictive networked control of interconnected systems.

PubMed

Tran, Tri; Ha, Q P

2018-01-01

A perturbed cooperative-state feedback (PSF) strategy is presented for the control of interconnected systems in this paper. The subsystems of an interconnected system can exchange data via the communication network that has multiple connection topologies. The PSF strategy can resolve both issues, the sensor data losses and the communication network breaks, thanks to the two components of the control including a cooperative-state feedback and a perturbation variable, e.g., u i =K ij x j +w i . The PSF is implemented in a decentralized model predictive control scheme with a stability constraint and a non-monotonic storage function (ΔV(x(k))≥0), derived from the dissipative systems theory. Numerical simulation for the automatic generation control problem in power systems is studied to illustrate the effectiveness of the presented PSF strategy. Copyright © 2017 ISA. Published by Elsevier Ltd. All rights reserved.

The generation and use of numerical shape models for irregular Solar System objects

NASA Technical Reports Server (NTRS)

Simonelli, Damon P.; Thomas, Peter C.; Carcich, Brian T.; Veverka, Joseph

1993-01-01

We describe a procedure that allows the efficient generation of numerical shape models for irregular Solar System objects, where a numerical model is simply a table of evenly spaced body-centered latitudes and longitudes and their associated radii. This modeling technique uses a combination of data from limbs, terminators, and control points, and produces shape models that have some important advantages over analytical shape models. Accurate numerical shape models make it feasible to study irregular objects with a wide range of standard scientific analysis techniques. These applications include the determination of moments of inertia and surface gravity, the mapping of surface locations and structural orientations, photometric measurement and analysis, the reprojection and mosaicking of digital images, and the generation of albedo maps. The capabilities of our modeling procedure are illustrated through the development of an accurate numerical shape model for Phobos and the production of a global, high-resolution, high-pass-filtered digital image mosaic of this Martian moon. Other irregular objects that have been modeled, or are being modeled, include the asteroid Gaspra and the satellites Deimos, Amalthea, Epimetheus, Janus, Hyperion, and Proteus.

Computational fluid dynamics study of viscous fingering in supercritical fluid chromatography.

PubMed

Subraveti, Sai Gokul; Nikrityuk, Petr; Rajendran, Arvind

2018-01-26

Axi-symmetric numerical simulations are carried out to study the dynamics of a plug introduced through a mixed-stream injection in supercritical fluid chromatographic columns. The computational fluid dynamics model developed in this work takes into account both the hydrodynamics and adsorption equilibria to describe the phenomena of viscous fingering and plug effect that contribute to peak distortions in mixed-stream injections. The model was implemented into commercial computational fluid dynamics software using user-defined functions. The simulations describe the propagation of both the solute and modifier highlighting the interplay between the hydrodynamics and plug effect. The simulated peaks showed good agreement with experimental data published in the literature involving different injection volumes (5 μL, 50 μL, 1 mL and 2 mL) of flurbiprofen on Chiralpak AD-H column using a mobile phase of CO 2 and methanol. The study demonstrates that while viscous fingering is the main source of peak distortions for large-volume injections (1 mL and 2 mL) it has negligible impact on small-volume injections (5 μL and 50 μL). Band broadening in small-volume injections arise mainly due to the plug effect. Crown Copyright © 2017. Published by Elsevier B.V. All rights reserved.